Query 041923
Match_columns 529
No_of_seqs 445 out of 2885
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 20:57:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.2E-50 4.2E-55 363.4 12.7 171 19-189 29-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 5.8E-49 2E-53 347.6 12.7 171 19-191 2-174 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-37 4.7E-42 332.3 19.7 281 212-505 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-35 6.6E-40 345.9 21.7 284 208-504 123-452 (1249)
5 1z6t_A APAF-1, apoptotic prote 100.0 3.9E-34 1.3E-38 309.4 20.8 307 208-528 123-495 (591)
6 1vt4_I APAF-1 related killer D 100.0 8.9E-33 3E-37 300.7 19.3 287 209-525 128-459 (1221)
7 3h16_A TIR protein; bacteria T 100.0 2E-31 6.7E-36 235.2 3.5 118 20-138 15-133 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 4.7E-26 1.6E-30 197.5 3.4 105 20-126 5-112 (146)
9 2js7_A Myeloid differentiation 99.9 1.2E-22 4.3E-27 179.0 6.1 101 21-123 12-117 (160)
10 1fyx_A TOLL-like receptor 2; b 99.8 5.8E-23 2E-27 179.3 0.5 100 22-123 2-107 (149)
11 2j67_A TOLL like receptor 10; 99.8 2.7E-22 9.3E-27 179.6 2.8 101 20-122 30-135 (178)
12 1t3g_A X-linked interleukin-1 99.8 1.5E-21 5.1E-26 171.9 6.2 100 24-123 1-114 (159)
13 2qen_A Walker-type ATPase; unk 99.8 2.2E-17 7.6E-22 165.8 20.9 274 208-498 11-349 (350)
14 2fna_A Conserved hypothetical 99.7 3.4E-17 1.2E-21 164.9 17.3 269 208-497 12-356 (357)
15 1w5s_A Origin recognition comp 99.6 9.2E-15 3.1E-19 150.2 17.5 263 208-483 21-371 (412)
16 3j0a_A TOLL-like receptor 5; m 99.5 2.6E-15 9E-20 168.5 5.9 102 21-124 666-775 (844)
17 2qby_B CDC6 homolog 3, cell di 99.5 8.7E-12 3E-16 126.7 25.8 260 208-483 19-339 (384)
18 2v1u_A Cell division control p 99.4 4.7E-11 1.6E-15 121.2 28.7 264 208-483 18-351 (387)
19 2qby_A CDC6 homolog 1, cell di 99.4 3.5E-12 1.2E-16 129.4 19.7 264 208-483 19-348 (386)
20 1fnn_A CDC6P, cell division co 99.4 1.8E-11 6.2E-16 124.4 21.5 285 208-504 16-387 (389)
21 1njg_A DNA polymerase III subu 99.3 7.9E-11 2.7E-15 111.0 15.3 174 208-399 22-231 (250)
22 2chg_A Replication factor C sm 99.2 3.3E-10 1.1E-14 105.2 15.0 172 208-395 16-203 (226)
23 1hqc_A RUVB; extended AAA-ATPa 99.0 3.1E-08 1E-12 97.9 21.9 250 208-496 11-311 (324)
24 1sxj_B Activator 1 37 kDa subu 99.0 2.2E-09 7.5E-14 106.0 13.0 171 208-395 20-209 (323)
25 1iqp_A RFCS; clamp loader, ext 98.9 7E-09 2.4E-13 102.5 12.6 174 208-398 24-214 (327)
26 1jr3_A DNA polymerase III subu 98.8 2.9E-08 9.8E-13 100.1 13.0 178 208-397 15-222 (373)
27 2chq_A Replication factor C sm 98.8 5.1E-08 1.8E-12 95.9 13.1 170 208-395 16-203 (319)
28 1jbk_A CLPB protein; beta barr 98.7 4.8E-08 1.6E-12 88.1 10.2 47 208-254 21-69 (195)
29 3pfi_A Holliday junction ATP-d 98.7 4.8E-07 1.6E-11 89.9 16.6 241 208-487 28-318 (338)
30 3te6_A Regulatory protein SIR3 98.6 1.3E-06 4.4E-11 85.2 18.0 113 209-325 20-154 (318)
31 1sxj_D Activator 1 41 kDa subu 98.6 1.4E-06 4.6E-11 87.0 18.0 181 208-395 36-234 (353)
32 2p65_A Hypothetical protein PF 98.6 3E-07 1E-11 82.4 10.6 47 208-254 21-69 (187)
33 3d8b_A Fidgetin-like protein 1 98.5 1.3E-06 4.5E-11 87.4 15.7 66 172-253 63-142 (357)
34 1d2n_A N-ethylmaleimide-sensit 98.5 4.6E-06 1.6E-10 80.0 17.3 46 208-253 32-89 (272)
35 3h4m_A Proteasome-activating n 98.4 2.1E-06 7.1E-11 83.0 13.5 47 208-254 16-77 (285)
36 3bos_A Putative DNA replicatio 98.4 3.8E-07 1.3E-11 85.6 7.7 55 208-262 27-86 (242)
37 1sxj_A Activator 1 95 kDa subu 98.4 7.5E-06 2.6E-10 86.1 18.1 45 208-252 38-101 (516)
38 2qz4_A Paraplegin; AAA+, SPG7, 98.4 1.3E-05 4.3E-10 76.3 17.3 47 208-254 5-65 (262)
39 1sxj_E Activator 1 40 kDa subu 98.3 3.5E-06 1.2E-10 84.1 13.3 45 208-252 13-60 (354)
40 3n70_A Transport activator; si 98.3 1.8E-06 6.2E-11 74.4 9.2 108 210-343 2-115 (145)
41 2z4s_A Chromosomal replication 98.3 7E-06 2.4E-10 84.4 14.6 121 208-343 104-236 (440)
42 3b9p_A CG5977-PA, isoform A; A 98.3 7.8E-06 2.7E-10 79.4 13.9 46 208-253 20-79 (297)
43 3eie_A Vacuolar protein sortin 98.3 1.6E-05 5.6E-10 78.2 15.6 47 208-254 17-77 (322)
44 1xwi_A SKD1 protein; VPS4B, AA 98.3 3E-05 1E-09 76.2 17.3 45 208-252 11-69 (322)
45 3uk6_A RUVB-like 2; hexameric 98.3 1.3E-05 4.4E-10 80.4 15.0 48 208-255 43-97 (368)
46 3vfd_A Spastin; ATPase, microt 98.2 9E-06 3.1E-10 82.3 13.2 46 208-253 114-173 (389)
47 2qp9_X Vacuolar protein sortin 98.2 2.5E-05 8.6E-10 77.9 16.1 46 208-253 50-109 (355)
48 3ec2_A DNA replication protein 98.2 7.1E-06 2.4E-10 73.3 10.9 117 208-343 9-142 (180)
49 3pvs_A Replication-associated 98.2 7.9E-06 2.7E-10 84.0 12.5 164 208-396 25-215 (447)
50 3u61_B DNA polymerase accessor 98.2 5.5E-06 1.9E-10 81.6 10.1 116 208-344 25-146 (324)
51 1qvr_A CLPB protein; coiled co 98.1 1.7E-05 5.8E-10 88.6 14.4 47 208-254 169-217 (854)
52 3syl_A Protein CBBX; photosynt 98.1 1.5E-05 5.2E-10 77.8 11.9 115 210-343 32-178 (309)
53 2w58_A DNAI, primosome compone 98.1 1.2E-05 4.2E-10 73.2 10.2 55 208-262 24-88 (202)
54 1sxj_C Activator 1 40 kDa subu 98.1 2.2E-05 7.6E-10 77.8 12.8 167 208-391 24-207 (340)
55 2zan_A Vacuolar protein sortin 98.1 2.7E-05 9.3E-10 80.1 13.8 45 208-252 133-191 (444)
56 1a5t_A Delta prime, HOLB; zinc 98.0 0.00012 4E-09 72.4 16.5 164 215-394 8-203 (334)
57 4b4t_J 26S protease regulatory 98.0 0.00013 4.5E-09 72.9 16.0 88 209-316 148-251 (405)
58 1in4_A RUVB, holliday junction 98.0 0.00022 7.4E-09 70.5 17.3 47 208-254 24-77 (334)
59 1l8q_A Chromosomal replication 98.0 0.00011 3.8E-09 72.1 14.9 119 208-343 10-140 (324)
60 1r6b_X CLPA protein; AAA+, N-t 97.9 0.00012 4.2E-09 80.6 16.4 47 208-254 185-233 (758)
61 3co5_A Putative two-component 97.9 7.4E-06 2.5E-10 70.3 4.4 44 209-252 4-51 (143)
62 3pxg_A Negative regulator of g 97.9 2.6E-05 8.9E-10 80.8 8.5 47 208-254 179-227 (468)
63 4b4t_K 26S protease regulatory 97.8 0.00037 1.3E-08 70.6 16.3 88 209-316 172-275 (428)
64 3cf0_A Transitional endoplasmi 97.8 7.6E-05 2.6E-09 72.6 10.9 46 208-253 14-74 (301)
65 4b4t_H 26S protease regulatory 97.8 0.00043 1.5E-08 70.2 16.4 88 209-316 209-312 (467)
66 4b4t_I 26S protease regulatory 97.8 0.00061 2.1E-08 68.5 17.1 89 208-316 181-285 (437)
67 1lv7_A FTSH; alpha/beta domain 97.8 7.5E-05 2.6E-09 70.8 10.3 46 208-253 11-70 (257)
68 4b4t_M 26S protease regulatory 97.7 0.00042 1.4E-08 70.3 14.9 89 208-316 180-284 (434)
69 4fcw_A Chaperone protein CLPB; 97.7 5.2E-05 1.8E-09 74.0 7.7 48 208-255 16-74 (311)
70 2bjv_A PSP operon transcriptio 97.7 8.8E-05 3E-09 70.6 8.3 46 208-253 5-54 (265)
71 2kjq_A DNAA-related protein; s 97.7 4.7E-05 1.6E-09 65.8 5.7 28 227-254 35-62 (149)
72 3hu3_A Transitional endoplasmi 97.7 0.00017 5.9E-09 74.8 11.0 44 209-252 204-262 (489)
73 3pxi_A Negative regulator of g 97.6 9.6E-05 3.3E-09 81.5 8.5 47 208-254 179-227 (758)
74 1ojl_A Transcriptional regulat 97.6 8E-05 2.7E-09 72.5 7.0 44 209-252 2-49 (304)
75 2ce7_A Cell division protein F 97.6 0.00047 1.6E-08 71.0 12.9 46 208-253 15-74 (476)
76 1ixz_A ATP-dependent metallopr 97.6 0.0014 4.8E-08 61.7 14.9 46 208-253 15-74 (254)
77 4b4t_L 26S protease subunit RP 97.6 0.00032 1.1E-08 71.2 10.8 89 208-316 180-284 (437)
78 1eiw_A Hypothetical protein MT 97.5 0.00014 4.9E-09 58.6 6.1 71 24-117 3-73 (111)
79 2dhr_A FTSH; AAA+ protein, hex 97.4 0.0022 7.4E-08 66.5 14.6 46 208-253 30-89 (499)
80 3t15_A Ribulose bisphosphate c 97.4 0.00062 2.1E-08 65.8 9.6 28 227-254 35-62 (293)
81 2c9o_A RUVB-like 1; hexameric 97.3 0.00041 1.4E-08 71.6 8.5 48 208-255 36-90 (456)
82 2gno_A DNA polymerase III, gam 97.3 0.00056 1.9E-08 66.4 8.6 133 213-365 1-141 (305)
83 3cf2_A TER ATPase, transitiona 97.2 0.00056 1.9E-08 74.6 8.3 89 208-316 203-307 (806)
84 3pxi_A Negative regulator of g 97.1 0.00087 3E-08 73.8 8.9 46 209-254 491-547 (758)
85 1ypw_A Transitional endoplasmi 97.1 0.0017 5.8E-08 71.7 10.6 46 208-253 203-263 (806)
86 2x8a_A Nuclear valosin-contain 97.0 0.0016 5.6E-08 62.1 8.9 45 209-253 10-69 (274)
87 2qgz_A Helicase loader, putati 97.0 0.0019 6.4E-08 62.8 9.0 54 209-262 124-187 (308)
88 1iy2_A ATP-dependent metallopr 97.0 0.0019 6.6E-08 61.7 9.0 46 208-253 39-98 (278)
89 2cvh_A DNA repair and recombin 97.0 0.0021 7.1E-08 58.8 8.4 24 227-250 19-42 (220)
90 1g5t_A COB(I)alamin adenosyltr 96.9 0.0088 3E-07 53.5 11.7 113 227-344 27-163 (196)
91 2orw_A Thymidine kinase; TMTK, 96.9 0.00089 3.1E-08 59.8 5.1 108 228-343 3-112 (184)
92 3jvv_A Twitching mobility prot 96.8 0.0019 6.4E-08 64.1 7.5 111 227-346 122-233 (356)
93 2r44_A Uncharacterized protein 96.8 0.00087 3E-08 65.9 4.4 47 208-254 26-72 (331)
94 1qvr_A CLPB protein; coiled co 96.7 0.0021 7.3E-08 71.6 7.6 46 209-254 558-614 (854)
95 3m6a_A ATP-dependent protease 96.7 0.0031 1.1E-07 66.4 8.1 47 209-255 81-135 (543)
96 1ofh_A ATP-dependent HSL prote 96.7 0.0012 4.2E-08 63.9 4.6 46 208-253 14-75 (310)
97 2r62_A Cell division protease 96.6 0.0011 3.7E-08 63.0 3.8 48 208-255 10-71 (268)
98 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0029 1E-07 61.1 6.6 25 227-251 122-146 (331)
99 1r6b_X CLPA protein; AAA+, N-t 96.5 0.008 2.7E-07 66.1 10.6 45 208-252 457-512 (758)
100 2eyu_A Twitching motility prot 96.5 0.003 1E-07 59.8 6.0 113 225-345 22-134 (261)
101 1vma_A Cell division protein F 96.5 0.033 1.1E-06 53.8 13.3 36 227-263 103-138 (306)
102 1qhx_A CPT, protein (chloramph 96.4 0.0017 5.7E-08 57.4 3.4 26 228-253 3-28 (178)
103 4gp7_A Metallophosphoesterase; 96.4 0.003 1E-07 55.6 4.7 22 227-248 8-29 (171)
104 3dm5_A SRP54, signal recogniti 96.4 0.036 1.2E-06 56.1 13.2 28 228-255 100-127 (443)
105 3ice_A Transcription terminati 96.3 0.0029 9.9E-08 62.5 4.8 31 227-257 173-203 (422)
106 1rz3_A Hypothetical protein rb 96.3 0.0041 1.4E-07 56.3 5.4 41 214-254 3-48 (201)
107 2px0_A Flagellar biosynthesis 96.3 0.12 4.1E-06 49.6 16.0 28 227-254 104-131 (296)
108 2b8t_A Thymidine kinase; deoxy 96.3 0.0059 2E-07 56.1 6.3 106 227-343 11-125 (223)
109 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0072 2.5E-07 61.5 7.5 54 227-283 150-203 (473)
110 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.0025 8.5E-08 66.1 3.4 45 208-252 21-65 (500)
111 3kb2_A SPBC2 prophage-derived 96.1 0.0032 1.1E-07 55.1 3.6 25 229-253 2-26 (173)
112 2ck3_D ATP synthase subunit be 96.1 0.034 1.2E-06 56.5 11.3 56 227-285 152-207 (482)
113 3trf_A Shikimate kinase, SK; a 96.0 0.0041 1.4E-07 55.2 3.7 25 228-252 5-29 (185)
114 3vaa_A Shikimate kinase, SK; s 96.0 0.0044 1.5E-07 55.9 3.9 26 227-252 24-49 (199)
115 3hws_A ATP-dependent CLP prote 96.0 0.0049 1.7E-07 61.3 4.5 43 210-252 16-75 (363)
116 3kl4_A SRP54, signal recogniti 95.9 0.048 1.7E-06 55.2 11.6 28 228-255 97-124 (433)
117 2yvu_A Probable adenylyl-sulfa 95.9 0.007 2.4E-07 53.8 4.8 29 227-255 12-40 (186)
118 1fx0_B ATP synthase beta chain 95.9 0.032 1.1E-06 57.0 10.0 56 227-285 164-219 (498)
119 1tue_A Replication protein E1; 95.9 0.0073 2.5E-07 54.3 4.7 37 218-254 45-84 (212)
120 1jr3_D DNA polymerase III, del 95.9 0.44 1.5E-05 46.5 18.3 146 227-394 17-183 (343)
121 2ewv_A Twitching motility prot 95.8 0.016 5.6E-07 57.7 7.6 111 227-345 135-245 (372)
122 1ex7_A Guanylate kinase; subst 95.8 0.0037 1.3E-07 55.7 2.6 28 229-256 2-29 (186)
123 3lw7_A Adenylate kinase relate 95.8 0.0046 1.6E-07 54.0 3.1 22 229-251 2-23 (179)
124 3iij_A Coilin-interacting nucl 95.8 0.0048 1.7E-07 54.5 3.3 25 228-252 11-35 (180)
125 3io5_A Recombination and repai 95.8 0.0039 1.3E-07 60.0 2.7 26 230-255 30-55 (333)
126 3bh0_A DNAB-like replicative h 95.8 0.054 1.8E-06 52.6 11.0 61 218-285 58-118 (315)
127 1nks_A Adenylate kinase; therm 95.7 0.0089 3.1E-07 53.2 4.9 26 229-254 2-27 (194)
128 2c95_A Adenylate kinase 1; tra 95.7 0.0081 2.8E-07 53.7 4.5 26 227-252 8-33 (196)
129 1kht_A Adenylate kinase; phosp 95.7 0.0069 2.4E-07 53.9 3.9 27 228-254 3-29 (192)
130 1ly1_A Polynucleotide kinase; 95.7 0.0053 1.8E-07 54.1 3.0 22 229-250 3-24 (181)
131 3sr0_A Adenylate kinase; phosp 95.7 0.011 3.8E-07 53.6 5.2 86 230-325 2-94 (206)
132 2rhm_A Putative kinase; P-loop 95.7 0.0063 2.2E-07 54.3 3.5 25 228-252 5-29 (193)
133 1kag_A SKI, shikimate kinase I 95.7 0.0055 1.9E-07 53.7 3.0 26 228-253 4-29 (173)
134 3hyn_A Putative signal transdu 95.6 0.044 1.5E-06 47.5 8.4 95 39-136 31-135 (189)
135 1zuh_A Shikimate kinase; alpha 95.6 0.0071 2.4E-07 52.7 3.7 26 228-253 7-32 (168)
136 1nn5_A Similar to deoxythymidy 95.6 0.011 3.9E-07 53.6 5.2 30 227-256 8-37 (215)
137 3t61_A Gluconokinase; PSI-biol 95.6 0.0061 2.1E-07 55.0 3.3 25 228-252 18-42 (202)
138 1kgd_A CASK, peripheral plasma 95.6 0.0063 2.2E-07 53.9 3.3 26 228-253 5-30 (180)
139 3uie_A Adenylyl-sulfate kinase 95.6 0.01 3.5E-07 53.4 4.8 27 227-253 24-50 (200)
140 3l0o_A Transcription terminati 95.6 0.0043 1.5E-07 61.2 2.2 31 227-257 174-204 (427)
141 2iyv_A Shikimate kinase, SK; t 95.6 0.0065 2.2E-07 53.9 3.3 25 229-253 3-27 (184)
142 1via_A Shikimate kinase; struc 95.5 0.0065 2.2E-07 53.4 3.1 25 229-253 5-29 (175)
143 2j9r_A Thymidine kinase; TK1, 95.5 0.021 7.2E-07 51.7 6.4 109 227-343 27-137 (214)
144 2r2a_A Uncharacterized protein 95.5 0.023 7.8E-07 51.2 6.7 24 229-252 6-29 (199)
145 2dr3_A UPF0273 protein PH0284; 95.5 0.015 5E-07 54.1 5.6 37 227-263 22-58 (247)
146 1g8p_A Magnesium-chelatase 38 95.5 0.0063 2.2E-07 60.0 3.2 46 208-253 23-70 (350)
147 3upu_A ATP-dependent DNA helic 95.5 0.094 3.2E-06 53.8 12.1 36 227-262 44-79 (459)
148 4eun_A Thermoresistant glucoki 95.5 0.0092 3.1E-07 53.8 3.9 26 227-252 28-53 (200)
149 1zp6_A Hypothetical protein AT 95.5 0.0068 2.3E-07 54.0 3.0 25 227-251 8-32 (191)
150 2qor_A Guanylate kinase; phosp 95.5 0.0071 2.4E-07 54.8 3.1 27 227-253 11-37 (204)
151 2vli_A Antibiotic resistance p 95.4 0.0058 2E-07 54.0 2.4 26 228-253 5-30 (183)
152 2bwj_A Adenylate kinase 5; pho 95.4 0.0096 3.3E-07 53.4 3.9 27 227-253 11-37 (199)
153 2wwf_A Thymidilate kinase, put 95.4 0.016 5.3E-07 52.5 5.4 29 227-255 9-37 (212)
154 3c8u_A Fructokinase; YP_612366 95.4 0.0097 3.3E-07 54.0 3.9 28 227-254 21-48 (208)
155 1um8_A ATP-dependent CLP prote 95.4 0.011 3.8E-07 59.0 4.7 45 209-253 21-97 (376)
156 3a00_A Guanylate kinase, GMP k 95.4 0.0093 3.2E-07 53.1 3.7 31 228-258 1-31 (186)
157 2plr_A DTMP kinase, probable t 95.4 0.014 4.8E-07 52.8 4.9 29 228-256 4-32 (213)
158 1tev_A UMP-CMP kinase; ploop, 95.4 0.0084 2.9E-07 53.5 3.3 25 228-252 3-27 (196)
159 1y63_A LMAJ004144AAA protein; 95.4 0.01 3.4E-07 52.8 3.8 24 228-251 10-33 (184)
160 3cf2_A TER ATPase, transitiona 95.4 0.013 4.4E-07 64.0 5.2 46 209-254 477-537 (806)
161 1e6c_A Shikimate kinase; phosp 95.4 0.0082 2.8E-07 52.5 3.1 25 229-253 3-27 (173)
162 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.043 1.5E-06 53.7 8.5 105 227-343 170-274 (330)
163 2zts_A Putative uncharacterize 95.3 0.017 5.7E-07 53.8 5.3 36 227-262 29-65 (251)
164 2jaq_A Deoxyguanosine kinase; 95.3 0.0092 3.1E-07 53.7 3.4 24 230-253 2-25 (205)
165 3tlx_A Adenylate kinase 2; str 95.3 0.012 4.1E-07 54.9 4.3 37 216-252 13-53 (243)
166 2q6t_A DNAB replication FORK h 95.3 0.063 2.1E-06 54.9 10.0 55 225-286 197-252 (444)
167 2xxa_A Signal recognition part 95.3 0.077 2.6E-06 53.9 10.4 38 228-265 100-137 (433)
168 1knq_A Gluconate kinase; ALFA/ 95.2 0.01 3.5E-07 52.1 3.4 25 228-252 8-32 (175)
169 2cdn_A Adenylate kinase; phosp 95.2 0.013 4.3E-07 52.8 4.0 25 228-252 20-44 (201)
170 2wsm_A Hydrogenase expression/ 95.2 0.02 6.7E-07 52.3 5.3 41 215-255 15-57 (221)
171 1xjc_A MOBB protein homolog; s 95.2 0.022 7.5E-07 49.7 5.2 33 228-260 4-37 (169)
172 3tau_A Guanylate kinase, GMP k 95.2 0.012 4E-07 53.5 3.6 27 227-253 7-33 (208)
173 2ze6_A Isopentenyl transferase 95.2 0.011 3.6E-07 55.7 3.4 25 229-253 2-26 (253)
174 4a1f_A DNAB helicase, replicat 95.1 0.065 2.2E-06 52.4 9.0 60 218-284 36-95 (338)
175 3cm0_A Adenylate kinase; ATP-b 95.1 0.012 4.1E-07 52.1 3.5 24 229-252 5-28 (186)
176 2ga8_A Hypothetical 39.9 kDa p 95.1 0.012 4.1E-07 57.7 3.7 29 228-256 24-52 (359)
177 3ney_A 55 kDa erythrocyte memb 95.1 0.012 4E-07 52.9 3.3 27 227-253 18-44 (197)
178 2pt5_A Shikimate kinase, SK; a 95.1 0.012 4.2E-07 51.1 3.5 24 230-253 2-25 (168)
179 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.023 7.9E-07 52.1 5.5 36 227-262 22-57 (235)
180 1q57_A DNA primase/helicase; d 95.1 0.14 4.7E-06 53.3 11.9 54 226-286 240-294 (503)
181 2hf9_A Probable hydrogenase ni 95.1 0.027 9.2E-07 51.5 5.9 39 217-255 25-65 (226)
182 1qf9_A UMP/CMP kinase, protein 95.1 0.013 4.3E-07 52.2 3.4 24 229-252 7-30 (194)
183 3tr0_A Guanylate kinase, GMP k 95.0 0.013 4.6E-07 52.7 3.6 26 227-252 6-31 (205)
184 1gvn_B Zeta; postsegregational 95.0 0.014 4.7E-07 56.0 3.9 25 228-252 33-57 (287)
185 2j41_A Guanylate kinase; GMP, 95.0 0.014 4.7E-07 52.7 3.6 26 227-252 5-30 (207)
186 3e1s_A Exodeoxyribonuclease V, 95.0 0.096 3.3E-06 55.3 10.6 102 226-343 202-315 (574)
187 2pbr_A DTMP kinase, thymidylat 95.0 0.014 4.9E-07 51.9 3.7 25 230-254 2-26 (195)
188 1aky_A Adenylate kinase; ATP:A 95.0 0.014 4.8E-07 53.4 3.7 26 228-253 4-29 (220)
189 1ukz_A Uridylate kinase; trans 95.0 0.012 4.1E-07 53.1 3.1 25 228-252 15-39 (203)
190 3k1j_A LON protease, ATP-depen 95.0 0.018 6.1E-07 61.5 4.8 48 208-255 40-87 (604)
191 1cke_A CK, MSSA, protein (cyti 94.9 0.016 5.4E-07 53.2 3.8 25 228-252 5-29 (227)
192 1xx6_A Thymidine kinase; NESG, 94.9 0.011 3.8E-07 52.9 2.6 107 228-344 8-118 (191)
193 1zd8_A GTP:AMP phosphotransfer 94.9 0.015 5.1E-07 53.5 3.6 26 227-252 6-31 (227)
194 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.013 4.6E-07 55.2 3.3 26 228-253 4-29 (260)
195 1gtv_A TMK, thymidylate kinase 94.9 0.015 5E-07 52.9 3.4 26 229-254 1-26 (214)
196 3dzd_A Transcriptional regulat 94.8 0.68 2.3E-05 45.8 15.8 44 209-252 129-176 (368)
197 2bbw_A Adenylate kinase 4, AK4 94.8 0.018 6.2E-07 53.7 4.0 27 227-253 26-52 (246)
198 3fb4_A Adenylate kinase; psych 94.8 0.016 5.6E-07 52.7 3.6 23 230-252 2-24 (216)
199 2if2_A Dephospho-COA kinase; a 94.8 0.016 5.5E-07 52.2 3.5 22 229-250 2-23 (204)
200 1zak_A Adenylate kinase; ATP:A 94.8 0.015 5.2E-07 53.3 3.3 26 228-253 5-30 (222)
201 1g41_A Heat shock protein HSLU 94.8 0.024 8.2E-07 57.5 4.9 47 208-254 14-76 (444)
202 1n0w_A DNA repair protein RAD5 94.8 0.038 1.3E-06 51.1 6.0 26 227-252 23-48 (243)
203 2p5t_B PEZT; postsegregational 94.7 0.019 6.3E-07 54.0 3.8 27 227-253 31-57 (253)
204 2z0h_A DTMP kinase, thymidylat 94.7 0.018 6.2E-07 51.4 3.6 25 230-254 2-26 (197)
205 1odf_A YGR205W, hypothetical 3 94.7 0.025 8.5E-07 54.2 4.6 28 227-254 30-57 (290)
206 3umf_A Adenylate kinase; rossm 94.7 0.018 6.2E-07 52.6 3.4 26 227-252 28-53 (217)
207 2v54_A DTMP kinase, thymidylat 94.6 0.02 6.8E-07 51.5 3.6 25 228-252 4-28 (204)
208 2bdt_A BH3686; alpha-beta prot 94.6 0.018 6.1E-07 51.2 3.3 22 229-250 3-24 (189)
209 3asz_A Uridine kinase; cytidin 94.6 0.02 7E-07 51.8 3.7 26 228-253 6-31 (211)
210 3dl0_A Adenylate kinase; phosp 94.6 0.017 6E-07 52.5 3.2 23 230-252 2-24 (216)
211 2grj_A Dephospho-COA kinase; T 94.6 0.02 7E-07 51.2 3.4 25 228-252 12-36 (192)
212 1ye8_A Protein THEP1, hypothet 94.5 0.023 7.9E-07 50.2 3.7 24 230-253 2-25 (178)
213 2zr9_A Protein RECA, recombina 94.5 0.035 1.2E-06 54.7 5.3 37 227-263 60-96 (349)
214 1lvg_A Guanylate kinase, GMP k 94.5 0.02 6.8E-07 51.5 3.3 26 228-253 4-29 (198)
215 1xp8_A RECA protein, recombina 94.5 0.11 3.6E-06 51.6 8.8 37 227-263 73-109 (366)
216 3nwj_A ATSK2; P loop, shikimat 94.5 0.024 8.2E-07 53.1 3.9 26 228-253 48-73 (250)
217 1u94_A RECA protein, recombina 94.5 0.035 1.2E-06 54.8 5.2 37 227-263 62-98 (356)
218 1uf9_A TT1252 protein; P-loop, 94.5 0.02 6.7E-07 51.4 3.2 25 227-251 7-31 (203)
219 2qt1_A Nicotinamide riboside k 94.5 0.019 6.5E-07 51.9 3.1 25 227-251 20-44 (207)
220 2pez_A Bifunctional 3'-phospho 94.4 0.023 7.7E-07 50.1 3.4 27 228-254 5-31 (179)
221 2r6a_A DNAB helicase, replicat 94.4 0.1 3.6E-06 53.4 8.9 45 218-262 193-238 (454)
222 1uj2_A Uridine-cytidine kinase 94.4 0.02 6.9E-07 53.6 3.2 28 227-254 21-48 (252)
223 3be4_A Adenylate kinase; malar 94.4 0.027 9.3E-07 51.4 4.0 25 228-252 5-29 (217)
224 1m7g_A Adenylylsulfate kinase; 94.4 0.023 7.8E-07 51.6 3.5 27 227-253 24-50 (211)
225 2ehv_A Hypothetical protein PH 94.4 0.037 1.3E-06 51.4 5.0 25 227-251 29-53 (251)
226 3fwy_A Light-independent proto 94.4 0.034 1.2E-06 53.9 4.8 36 227-262 47-82 (314)
227 3hr8_A Protein RECA; alpha and 94.4 0.034 1.2E-06 54.8 4.9 37 227-263 60-96 (356)
228 3tqc_A Pantothenate kinase; bi 94.4 0.029 9.9E-07 54.5 4.3 44 211-254 69-118 (321)
229 2r8r_A Sensor protein; KDPD, P 94.4 0.039 1.3E-06 50.4 4.9 26 230-255 8-33 (228)
230 2yhs_A FTSY, cell division pro 94.4 0.054 1.9E-06 55.5 6.5 36 227-263 292-327 (503)
231 1cr0_A DNA primase/helicase; R 94.4 0.053 1.8E-06 52.0 6.2 38 218-255 25-62 (296)
232 1jjv_A Dephospho-COA kinase; P 94.3 0.021 7.3E-07 51.5 3.0 22 229-250 3-24 (206)
233 1ak2_A Adenylate kinase isoenz 94.3 0.027 9.4E-07 52.0 3.8 26 228-253 16-41 (233)
234 4e22_A Cytidylate kinase; P-lo 94.3 0.025 8.5E-07 53.1 3.5 27 227-253 26-52 (252)
235 3bgw_A DNAB-like replicative h 94.3 0.086 2.9E-06 53.8 7.8 38 225-262 194-231 (444)
236 4a74_A DNA repair and recombin 94.3 0.026 9E-07 51.7 3.6 27 227-253 24-50 (231)
237 3ake_A Cytidylate kinase; CMP 94.2 0.028 9.5E-07 50.6 3.7 25 229-253 3-27 (208)
238 1e4v_A Adenylate kinase; trans 94.2 0.028 9.7E-07 51.1 3.7 23 230-252 2-24 (214)
239 2jeo_A Uridine-cytidine kinase 94.2 0.026 8.8E-07 52.6 3.4 26 227-252 24-49 (245)
240 3hjn_A DTMP kinase, thymidylat 94.1 0.1 3.5E-06 46.8 7.1 34 230-263 2-35 (197)
241 1rj9_A FTSY, signal recognitio 94.1 0.047 1.6E-06 52.7 5.2 35 227-262 101-135 (304)
242 2xb4_A Adenylate kinase; ATP-b 94.1 0.029 9.9E-07 51.5 3.5 23 230-252 2-24 (223)
243 1znw_A Guanylate kinase, GMP k 94.1 0.029 1E-06 50.8 3.5 26 227-252 19-44 (207)
244 1np6_A Molybdopterin-guanine d 94.1 0.06 2E-06 47.3 5.4 28 228-255 6-33 (174)
245 4edh_A DTMP kinase, thymidylat 94.1 0.17 5.7E-06 46.0 8.6 28 228-255 6-33 (213)
246 2ck3_A ATP synthase subunit al 94.1 0.077 2.6E-06 54.3 6.8 87 227-316 161-272 (510)
247 1s96_A Guanylate kinase, GMP k 94.0 0.03 1E-06 51.3 3.4 114 227-347 15-143 (219)
248 1z6g_A Guanylate kinase; struc 94.0 0.028 9.6E-07 51.4 3.2 26 227-252 22-47 (218)
249 2z43_A DNA repair and recombin 94.0 0.059 2E-06 52.5 5.7 27 227-253 106-132 (324)
250 3r20_A Cytidylate kinase; stru 94.0 0.034 1.2E-06 51.4 3.7 26 228-253 9-34 (233)
251 3end_A Light-independent proto 93.9 0.047 1.6E-06 52.7 4.8 38 227-265 40-77 (307)
252 3p32_A Probable GTPase RV1496/ 93.9 0.072 2.4E-06 52.7 6.2 29 227-255 78-106 (355)
253 1w36_D RECD, exodeoxyribonucle 93.9 0.26 8.8E-06 52.5 10.9 27 227-253 163-189 (608)
254 2qe7_A ATP synthase subunit al 93.9 0.12 4.3E-06 52.7 8.0 85 227-316 161-264 (502)
255 2r9v_A ATP synthase subunit al 93.8 0.12 4.3E-06 52.7 7.8 85 227-316 174-277 (515)
256 1yrb_A ATP(GTP)binding protein 93.8 0.055 1.9E-06 50.7 4.9 27 227-253 13-39 (262)
257 1nlf_A Regulatory protein REPA 93.8 0.066 2.3E-06 50.9 5.5 30 225-254 27-56 (279)
258 1vht_A Dephospho-COA kinase; s 93.7 0.033 1.1E-06 50.8 3.1 23 228-250 4-26 (218)
259 3lv8_A DTMP kinase, thymidylat 93.7 0.24 8.3E-06 45.7 9.0 29 227-255 26-54 (236)
260 3d3q_A TRNA delta(2)-isopenten 93.7 0.036 1.2E-06 54.1 3.3 25 229-253 8-32 (340)
261 2f1r_A Molybdopterin-guanine d 93.7 0.04 1.4E-06 48.3 3.4 27 229-255 3-29 (171)
262 3lnc_A Guanylate kinase, GMP k 93.6 0.027 9.2E-07 51.9 2.4 26 227-252 26-52 (231)
263 1zu4_A FTSY; GTPase, signal re 93.6 0.058 2E-06 52.5 4.8 36 227-263 104-139 (320)
264 2c61_A A-type ATP synthase non 93.6 0.089 3E-06 53.4 6.2 86 227-315 151-258 (469)
265 3crm_A TRNA delta(2)-isopenten 93.6 0.033 1.1E-06 54.0 2.9 24 229-252 6-29 (323)
266 1htw_A HI0065; nucleotide-bind 93.6 0.039 1.3E-06 47.6 3.1 26 227-252 32-57 (158)
267 3b9q_A Chloroplast SRP recepto 93.6 0.056 1.9E-06 52.1 4.6 35 227-262 99-133 (302)
268 1a7j_A Phosphoribulokinase; tr 93.6 0.024 8.1E-07 54.4 1.9 26 228-253 5-30 (290)
269 2f6r_A COA synthase, bifunctio 93.6 0.034 1.2E-06 53.0 3.0 23 228-250 75-97 (281)
270 3aez_A Pantothenate kinase; tr 93.6 0.039 1.4E-06 53.4 3.5 28 227-254 89-116 (312)
271 2i3b_A HCR-ntpase, human cance 93.5 0.044 1.5E-06 48.9 3.4 25 229-253 2-26 (189)
272 3a8t_A Adenylate isopentenyltr 93.5 0.024 8.3E-07 55.2 1.8 25 228-252 40-64 (339)
273 3exa_A TRNA delta(2)-isopenten 93.4 0.034 1.2E-06 53.5 2.7 25 228-252 3-27 (322)
274 1cp2_A CP2, nitrogenase iron p 93.4 0.067 2.3E-06 50.4 4.8 34 229-262 2-35 (269)
275 2qmh_A HPR kinase/phosphorylas 93.4 0.029 9.9E-07 50.1 2.0 26 227-252 33-58 (205)
276 3v9p_A DTMP kinase, thymidylat 93.4 0.12 4.1E-06 47.5 6.2 29 227-255 24-52 (227)
277 1ltq_A Polynucleotide kinase; 93.3 0.042 1.4E-06 52.8 3.2 23 229-251 3-25 (301)
278 3foz_A TRNA delta(2)-isopenten 93.3 0.04 1.4E-06 52.9 2.9 25 228-252 10-34 (316)
279 4eaq_A DTMP kinase, thymidylat 93.2 0.074 2.5E-06 49.0 4.6 28 227-254 25-52 (229)
280 3e70_C DPA, signal recognition 93.2 0.067 2.3E-06 52.1 4.5 29 227-255 128-156 (328)
281 2oze_A ORF delta'; para, walke 93.2 0.099 3.4E-06 50.1 5.7 39 217-255 22-64 (298)
282 3vr4_D V-type sodium ATPase su 93.2 0.13 4.5E-06 51.9 6.6 87 227-316 150-258 (465)
283 2afh_E Nitrogenase iron protei 93.1 0.081 2.8E-06 50.5 4.9 27 229-255 3-29 (289)
284 4tmk_A Protein (thymidylate ki 93.1 0.22 7.4E-06 45.2 7.5 28 228-255 3-30 (213)
285 1v5w_A DMC1, meiotic recombina 93.1 0.088 3E-06 51.7 5.2 27 227-253 121-147 (343)
286 3ld9_A DTMP kinase, thymidylat 93.1 0.16 5.4E-06 46.5 6.5 28 227-254 20-47 (223)
287 1q3t_A Cytidylate kinase; nucl 93.1 0.065 2.2E-06 49.5 4.0 26 227-252 15-40 (236)
288 1sq5_A Pantothenate kinase; P- 93.1 0.087 3E-06 50.9 5.1 40 227-266 79-119 (308)
289 2ocp_A DGK, deoxyguanosine kin 93.0 0.051 1.8E-06 50.4 3.1 26 228-253 2-27 (241)
290 2og2_A Putative signal recogni 92.9 0.077 2.6E-06 52.3 4.5 29 227-255 156-184 (359)
291 1ls1_A Signal recognition part 92.9 0.089 3E-06 50.5 4.9 36 228-264 98-133 (295)
292 3zvl_A Bifunctional polynucleo 92.9 0.041 1.4E-06 55.7 2.5 26 227-252 257-282 (416)
293 1pzn_A RAD51, DNA repair and r 92.8 0.069 2.4E-06 52.6 4.0 26 227-252 130-155 (349)
294 2ged_A SR-beta, signal recogni 92.8 0.093 3.2E-06 46.3 4.5 25 227-251 47-71 (193)
295 2pcj_A ABC transporter, lipopr 92.8 0.054 1.8E-06 49.7 3.0 24 227-250 29-52 (224)
296 3kjh_A CO dehydrogenase/acetyl 92.8 0.093 3.2E-06 48.6 4.7 34 231-265 3-36 (254)
297 3bk7_A ABC transporter ATP-bin 92.8 0.49 1.7E-05 50.2 10.7 26 227-252 381-406 (607)
298 2fz4_A DNA repair protein RAD2 92.7 0.45 1.5E-05 43.8 9.3 41 211-252 92-132 (237)
299 2v3c_C SRP54, signal recogniti 92.7 0.054 1.8E-06 55.0 3.1 28 228-255 99-126 (432)
300 1u0j_A DNA replication protein 92.7 0.1 3.5E-06 49.0 4.8 35 218-252 90-128 (267)
301 3eph_A TRNA isopentenyltransfe 92.7 0.065 2.2E-06 53.4 3.6 26 228-253 2-27 (409)
302 3tif_A Uncharacterized ABC tra 92.7 0.056 1.9E-06 50.0 2.9 24 227-250 30-53 (235)
303 1g8f_A Sulfate adenylyltransfe 92.6 0.085 2.9E-06 54.6 4.5 45 210-254 373-421 (511)
304 3gqb_B V-type ATP synthase bet 92.6 0.17 5.8E-06 51.1 6.4 87 227-316 146-261 (464)
305 3mfy_A V-type ATP synthase alp 92.6 0.29 9.8E-06 50.5 8.2 50 227-282 226-275 (588)
306 1ny5_A Transcriptional regulat 92.6 0.51 1.7E-05 47.1 10.1 42 210-251 138-183 (387)
307 3io3_A DEHA2D07832P; chaperone 92.6 0.13 4.3E-06 50.6 5.5 38 227-265 17-56 (348)
308 1ypw_A Transitional endoplasmi 92.5 0.06 2.1E-06 59.3 3.5 48 208-255 476-538 (806)
309 2axn_A 6-phosphofructo-2-kinas 92.5 0.096 3.3E-06 54.6 4.8 30 227-256 34-63 (520)
310 3b85_A Phosphate starvation-in 92.5 0.08 2.7E-06 47.9 3.7 26 226-251 20-45 (208)
311 3cr8_A Sulfate adenylyltranfer 92.5 0.11 3.6E-06 54.5 5.1 44 212-255 349-396 (552)
312 3f9v_A Minichromosome maintena 92.5 0.035 1.2E-06 59.0 1.4 45 208-252 294-351 (595)
313 3oaa_A ATP synthase subunit al 92.5 0.28 9.5E-06 50.0 7.9 85 227-316 161-264 (513)
314 1oix_A RAS-related protein RAB 92.5 0.072 2.5E-06 47.3 3.3 23 229-251 30-52 (191)
315 3lda_A DNA repair protein RAD5 92.5 0.083 2.8E-06 53.0 4.1 35 218-252 164-202 (400)
316 1svm_A Large T antigen; AAA+ f 92.5 0.098 3.3E-06 52.0 4.5 26 227-252 168-193 (377)
317 4hlc_A DTMP kinase, thymidylat 92.4 0.1 3.4E-06 47.2 4.2 29 229-257 3-31 (205)
318 3fdi_A Uncharacterized protein 92.4 0.085 2.9E-06 47.5 3.7 26 228-253 6-31 (201)
319 2cbz_A Multidrug resistance-as 92.4 0.063 2.2E-06 49.7 2.9 26 227-252 30-55 (237)
320 3e2i_A Thymidine kinase; Zn-bi 92.4 0.16 5.5E-06 45.9 5.4 121 208-341 11-135 (219)
321 3tqf_A HPR(Ser) kinase; transf 92.4 0.07 2.4E-06 46.4 2.9 25 227-251 15-39 (181)
322 3iqw_A Tail-anchored protein t 92.3 0.14 4.8E-06 50.0 5.4 36 227-262 15-50 (334)
323 1fx0_A ATP synthase alpha chai 92.3 0.13 4.6E-06 52.5 5.3 85 227-316 162-265 (507)
324 2d2e_A SUFC protein; ABC-ATPas 92.3 0.079 2.7E-06 49.5 3.4 25 227-251 28-52 (250)
325 1j8m_F SRP54, signal recogniti 92.3 0.089 3E-06 50.5 3.9 28 228-255 98-125 (297)
326 2onk_A Molybdate/tungstate ABC 92.2 0.077 2.6E-06 49.3 3.3 24 227-251 24-47 (240)
327 2v9p_A Replication protein E1; 92.2 0.11 3.7E-06 50.0 4.4 26 227-252 125-150 (305)
328 2i1q_A DNA repair and recombin 92.2 0.13 4.3E-06 50.1 4.9 26 227-252 97-122 (322)
329 1b0u_A Histidine permease; ABC 92.2 0.069 2.4E-06 50.3 2.9 25 227-251 31-55 (262)
330 2p67_A LAO/AO transport system 92.2 0.12 4.2E-06 50.6 4.8 28 227-254 55-82 (341)
331 1sgw_A Putative ABC transporte 92.1 0.063 2.2E-06 48.9 2.5 25 227-251 34-58 (214)
332 1ji0_A ABC transporter; ATP bi 92.1 0.071 2.4E-06 49.5 2.9 24 227-250 31-54 (240)
333 1puj_A YLQF, conserved hypothe 92.1 1.2 4E-05 42.2 11.5 23 228-250 120-142 (282)
334 2pze_A Cystic fibrosis transme 92.1 0.072 2.5E-06 49.1 2.9 26 227-252 33-58 (229)
335 2f9l_A RAB11B, member RAS onco 92.1 0.075 2.6E-06 47.4 3.0 22 230-251 7-28 (199)
336 2zu0_C Probable ATP-dependent 92.1 0.085 2.9E-06 49.8 3.4 25 227-251 45-69 (267)
337 4g1u_C Hemin import ATP-bindin 92.1 0.072 2.5E-06 50.3 2.9 24 227-250 36-59 (266)
338 2wji_A Ferrous iron transport 92.0 0.082 2.8E-06 45.5 3.1 22 229-250 4-25 (165)
339 2dyk_A GTP-binding protein; GT 92.0 0.081 2.8E-06 45.0 3.0 23 229-251 2-24 (161)
340 3gfo_A Cobalt import ATP-bindi 92.0 0.072 2.5E-06 50.5 2.9 24 227-250 33-56 (275)
341 1g6h_A High-affinity branched- 92.0 0.074 2.5E-06 49.9 2.9 24 227-250 32-55 (257)
342 2olj_A Amino acid ABC transpor 92.0 0.075 2.6E-06 50.1 2.9 25 227-251 49-73 (263)
343 2h92_A Cytidylate kinase; ross 92.0 0.08 2.7E-06 48.1 3.1 25 228-252 3-27 (219)
344 2ce2_X GTPase HRAS; signaling 92.0 0.087 3E-06 44.8 3.1 22 230-251 5-26 (166)
345 2ff7_A Alpha-hemolysin translo 91.9 0.077 2.6E-06 49.5 2.9 25 227-251 34-58 (247)
346 2zej_A Dardarin, leucine-rich 91.9 0.066 2.3E-06 47.1 2.3 21 230-250 4-24 (184)
347 3ea0_A ATPase, para family; al 91.8 0.17 5.9E-06 46.6 5.2 38 228-265 4-42 (245)
348 4gzl_A RAS-related C3 botulinu 91.8 0.089 3.1E-06 47.2 3.1 38 214-251 14-53 (204)
349 1vpl_A ABC transporter, ATP-bi 91.8 0.082 2.8E-06 49.6 2.9 25 227-251 40-64 (256)
350 2ghi_A Transport protein; mult 91.8 0.082 2.8E-06 49.7 2.9 25 227-251 45-69 (260)
351 1z2a_A RAS-related protein RAB 91.8 0.091 3.1E-06 45.0 3.0 22 230-251 7-28 (168)
352 3gmt_A Adenylate kinase; ssgci 91.7 0.098 3.3E-06 48.0 3.3 24 229-252 9-32 (230)
353 2qi9_C Vitamin B12 import ATP- 91.7 0.085 2.9E-06 49.3 2.9 26 227-252 25-50 (249)
354 3zq6_A Putative arsenical pump 91.7 0.13 4.3E-06 50.1 4.3 35 228-262 14-48 (324)
355 4dkx_A RAS-related protein RAB 91.7 0.25 8.6E-06 44.9 6.0 21 230-250 15-35 (216)
356 3cio_A ETK, tyrosine-protein k 91.7 0.27 9.2E-06 47.2 6.5 36 227-262 103-139 (299)
357 3bfv_A CAPA1, CAPB2, membrane 91.6 0.27 9.3E-06 46.4 6.4 46 217-262 65-117 (271)
358 2j37_W Signal recognition part 91.6 0.14 4.9E-06 52.8 4.7 28 228-255 101-128 (504)
359 2qm8_A GTPase/ATPase; G protei 91.6 0.13 4.5E-06 50.3 4.3 28 227-254 54-81 (337)
360 2ixe_A Antigen peptide transpo 91.6 0.087 3E-06 49.9 2.9 25 227-251 44-68 (271)
361 2nq2_C Hypothetical ABC transp 91.6 0.09 3.1E-06 49.2 2.9 25 227-251 30-54 (253)
362 1bif_A 6-phosphofructo-2-kinas 91.6 0.15 5.2E-06 52.4 4.9 30 227-256 38-67 (469)
363 1p9r_A General secretion pathw 91.5 0.21 7.2E-06 50.4 5.8 95 220-323 158-253 (418)
364 4f4c_A Multidrug resistance pr 91.5 0.31 1.1E-05 56.7 8.0 25 227-251 443-467 (1321)
365 2yz2_A Putative ABC transporte 91.5 0.091 3.1E-06 49.6 2.9 24 227-250 32-55 (266)
366 4dzz_A Plasmid partitioning pr 91.5 0.14 4.8E-06 45.8 4.1 34 229-262 2-36 (206)
367 1mv5_A LMRA, multidrug resista 91.5 0.079 2.7E-06 49.3 2.4 24 227-250 27-50 (243)
368 2ihy_A ABC transporter, ATP-bi 91.4 0.094 3.2E-06 49.9 2.9 25 227-251 46-70 (279)
369 2ffh_A Protein (FFH); SRP54, s 91.4 0.17 5.8E-06 51.1 4.9 28 228-255 98-125 (425)
370 3con_A GTPase NRAS; structural 91.4 0.1 3.5E-06 46.0 3.0 22 230-251 23-44 (190)
371 2wjg_A FEOB, ferrous iron tran 91.3 0.099 3.4E-06 45.9 2.8 23 229-251 8-30 (188)
372 1u8z_A RAS-related protein RAL 91.3 0.11 3.7E-06 44.4 3.0 22 230-251 6-27 (168)
373 2nzj_A GTP-binding protein REM 91.3 0.1 3.5E-06 45.1 2.8 21 230-250 6-26 (175)
374 1kao_A RAP2A; GTP-binding prot 91.3 0.11 3.7E-06 44.3 3.0 22 230-251 5-26 (167)
375 2gks_A Bifunctional SAT/APS ki 91.3 0.25 8.6E-06 51.7 6.2 45 210-254 350-398 (546)
376 1m7b_A RND3/RHOE small GTP-bin 91.3 0.11 3.8E-06 45.5 3.1 22 230-251 9-30 (184)
377 2www_A Methylmalonic aciduria 91.3 0.16 5.6E-06 49.9 4.6 27 228-254 74-100 (349)
378 3tmk_A Thymidylate kinase; pho 91.3 0.15 5.2E-06 46.3 4.0 28 227-254 4-31 (216)
379 2orv_A Thymidine kinase; TP4A 91.2 0.23 8E-06 45.4 5.2 107 228-343 19-125 (234)
380 2iut_A DNA translocase FTSK; n 91.2 1.4 4.9E-05 45.8 11.8 40 227-266 213-255 (574)
381 1c1y_A RAS-related protein RAP 91.2 0.11 3.8E-06 44.3 3.0 22 230-251 5-26 (167)
382 1r8s_A ADP-ribosylation factor 91.2 0.12 4.1E-06 44.1 3.2 22 230-251 2-23 (164)
383 1z08_A RAS-related protein RAB 91.2 0.11 3.8E-06 44.5 3.0 22 230-251 8-29 (170)
384 3ug7_A Arsenical pump-driving 91.1 0.18 6.2E-06 49.6 4.8 36 227-263 25-60 (349)
385 1ek0_A Protein (GTP-binding pr 91.1 0.12 4E-06 44.3 3.0 22 230-251 5-26 (170)
386 2iwr_A Centaurin gamma 1; ANK 91.0 0.11 3.8E-06 45.1 2.8 22 230-251 9-30 (178)
387 1nrj_B SR-beta, signal recogni 91.0 0.14 4.8E-06 46.2 3.7 25 227-251 11-35 (218)
388 2gj8_A MNME, tRNA modification 91.0 0.12 4E-06 45.0 2.9 23 229-251 5-27 (172)
389 3q85_A GTP-binding protein REM 91.0 0.11 3.9E-06 44.5 2.8 21 230-250 4-24 (169)
390 1z0j_A RAB-22, RAS-related pro 91.0 0.12 4.1E-06 44.3 3.0 22 230-251 8-29 (170)
391 1g16_A RAS-related protein SEC 91.0 0.12 4.3E-06 44.2 3.1 21 230-250 5-25 (170)
392 2lkc_A Translation initiation 91.0 0.14 4.9E-06 44.3 3.5 24 227-250 7-30 (178)
393 3q72_A GTP-binding protein RAD 91.0 0.11 3.8E-06 44.4 2.8 21 230-250 4-24 (166)
394 3kta_A Chromosome segregation 90.9 0.14 4.8E-06 44.9 3.5 26 227-252 25-50 (182)
395 3ihw_A Centg3; RAS, centaurin, 90.9 0.12 4.1E-06 45.5 3.0 22 230-251 22-43 (184)
396 3la6_A Tyrosine-protein kinase 90.9 0.39 1.3E-05 45.7 6.7 47 216-262 74-127 (286)
397 2fn4_A P23, RAS-related protei 90.9 0.13 4.4E-06 44.6 3.1 23 229-251 10-32 (181)
398 1ky3_A GTP-binding protein YPT 90.8 0.13 4.3E-06 44.7 3.0 23 229-251 9-31 (182)
399 1wms_A RAB-9, RAB9, RAS-relate 90.8 0.13 4.3E-06 44.6 3.0 22 230-251 9-30 (177)
400 4b3f_X DNA-binding protein smu 90.8 0.27 9.2E-06 52.8 6.1 47 216-263 193-239 (646)
401 1svi_A GTP-binding protein YSX 90.8 0.15 5.2E-06 44.9 3.6 24 227-250 22-45 (195)
402 1tq4_A IIGP1, interferon-induc 90.8 0.17 5.7E-06 50.9 4.2 24 227-250 68-91 (413)
403 3c5c_A RAS-like protein 12; GD 90.8 0.13 4.4E-06 45.4 3.0 22 230-251 23-44 (187)
404 1m8p_A Sulfate adenylyltransfe 90.8 0.18 6.1E-06 53.1 4.6 28 227-254 395-422 (573)
405 2erx_A GTP-binding protein DI- 90.7 0.12 4.2E-06 44.2 2.8 21 230-250 5-25 (172)
406 3nh6_A ATP-binding cassette SU 90.7 0.11 3.8E-06 50.0 2.7 24 227-250 79-102 (306)
407 1r2q_A RAS-related protein RAB 90.7 0.13 4.5E-06 43.9 3.0 22 230-251 8-29 (170)
408 1x6v_B Bifunctional 3'-phospho 90.7 0.13 4.5E-06 54.5 3.5 28 227-254 51-78 (630)
409 1m2o_B GTP-binding protein SAR 90.6 0.14 4.7E-06 45.3 3.1 25 227-251 22-46 (190)
410 1zj6_A ADP-ribosylation factor 90.6 0.21 7.3E-06 43.7 4.4 31 220-250 7-38 (187)
411 1p5z_B DCK, deoxycytidine kina 90.6 0.052 1.8E-06 51.1 0.2 26 227-252 23-48 (263)
412 3sop_A Neuronal-specific septi 90.6 0.14 5E-06 48.3 3.4 23 230-252 4-26 (270)
413 2bbs_A Cystic fibrosis transme 90.6 0.13 4.4E-06 49.2 3.0 25 227-251 63-87 (290)
414 1z0f_A RAB14, member RAS oncog 90.5 0.14 4.8E-06 44.3 3.0 23 229-251 16-38 (179)
415 2vp4_A Deoxynucleoside kinase; 90.5 0.081 2.8E-06 48.7 1.5 25 227-251 19-43 (230)
416 2cjw_A GTP-binding protein GEM 90.5 0.14 4.8E-06 45.4 3.0 21 230-250 8-28 (192)
417 1upt_A ARL1, ADP-ribosylation 90.5 0.14 4.9E-06 43.9 3.0 24 228-251 7-30 (171)
418 2cxx_A Probable GTP-binding pr 90.4 0.14 4.8E-06 44.9 2.9 22 230-251 3-24 (190)
419 3hdt_A Putative kinase; struct 90.4 0.17 5.7E-06 46.4 3.5 26 228-253 14-39 (223)
420 3fvq_A Fe(3+) IONS import ATP- 90.4 0.16 5.4E-06 50.0 3.5 24 227-250 29-52 (359)
421 2bme_A RAB4A, RAS-related prot 90.4 0.15 5.2E-06 44.5 3.1 23 229-251 11-33 (186)
422 3kkq_A RAS-related protein M-R 90.3 0.15 5E-06 44.5 3.0 23 229-251 19-41 (183)
423 2y8e_A RAB-protein 6, GH09086P 90.3 0.15 5.3E-06 44.0 3.1 22 230-251 16-37 (179)
424 3bc1_A RAS-related protein RAB 90.3 0.15 5.1E-06 44.8 3.0 23 229-251 12-34 (195)
425 2woj_A ATPase GET3; tail-ancho 90.3 0.31 1.1E-05 48.0 5.6 36 227-262 17-54 (354)
426 3thx_A DNA mismatch repair pro 90.3 0.42 1.5E-05 53.1 7.2 24 227-250 661-684 (934)
427 3dz8_A RAS-related protein RAB 90.3 0.16 5.6E-06 44.7 3.3 23 229-251 24-46 (191)
428 3t5g_A GTP-binding protein RHE 90.3 0.16 5.4E-06 44.2 3.1 22 229-250 7-28 (181)
429 1f6b_A SAR1; gtpases, N-termin 90.2 0.17 5.7E-06 45.2 3.3 24 227-250 24-47 (198)
430 1mh1_A RAC1; GTP-binding, GTPa 90.2 0.15 5.2E-06 44.4 3.0 22 230-251 7-28 (186)
431 2oil_A CATX-8, RAS-related pro 90.2 0.15 5.1E-06 45.0 3.0 23 229-251 26-48 (193)
432 2hxs_A RAB-26, RAS-related pro 90.2 0.13 4.6E-06 44.5 2.6 21 230-250 8-28 (178)
433 3pqc_A Probable GTP-binding pr 90.2 0.18 6.3E-06 44.3 3.5 24 228-251 23-46 (195)
434 2pjz_A Hypothetical protein ST 90.2 0.14 4.6E-06 48.3 2.7 25 228-252 30-54 (263)
435 4dsu_A GTPase KRAS, isoform 2B 90.2 0.15 5.3E-06 44.5 3.0 22 230-251 6-27 (189)
436 3vr4_A V-type sodium ATPase ca 90.2 0.95 3.3E-05 46.9 9.1 26 227-252 231-256 (600)
437 3bwd_D RAC-like GTP-binding pr 90.1 0.16 5.4E-06 44.2 3.0 23 229-251 9-31 (182)
438 2woo_A ATPase GET3; tail-ancho 90.1 0.33 1.1E-05 47.3 5.5 36 227-262 18-53 (329)
439 1tf7_A KAIC; homohexamer, hexa 90.1 0.39 1.3E-05 50.1 6.5 43 220-262 269-315 (525)
440 1c9k_A COBU, adenosylcobinamid 90.1 0.15 5.1E-06 44.8 2.7 30 230-263 1-30 (180)
441 2a9k_A RAS-related protein RAL 90.0 0.16 5.5E-06 44.2 3.0 23 229-251 19-41 (187)
442 3tui_C Methionine import ATP-b 90.0 0.17 5.9E-06 49.8 3.4 24 227-250 53-76 (366)
443 2atv_A RERG, RAS-like estrogen 90.0 0.16 5.5E-06 45.0 3.0 24 228-251 28-51 (196)
444 3fkq_A NTRC-like two-domain pr 90.0 0.24 8.2E-06 49.2 4.6 36 227-262 142-178 (373)
445 2efe_B Small GTP-binding prote 90.0 0.16 5.5E-06 44.1 3.0 22 230-251 14-35 (181)
446 1gwn_A RHO-related GTP-binding 90.0 0.17 5.7E-06 45.5 3.1 24 228-251 28-51 (205)
447 1fzq_A ADP-ribosylation factor 90.0 0.15 5.2E-06 44.6 2.8 24 228-251 16-39 (181)
448 2ew1_A RAS-related protein RAB 90.0 0.17 5.7E-06 45.4 3.1 23 229-251 27-49 (201)
449 2gza_A Type IV secretion syste 90.0 0.18 6.3E-06 49.8 3.7 93 227-324 174-270 (361)
450 3t1o_A Gliding protein MGLA; G 90.0 0.14 4.7E-06 45.2 2.5 24 229-252 15-38 (198)
451 1z47_A CYSA, putative ABC-tran 90.0 0.18 6E-06 49.7 3.4 24 227-250 40-63 (355)
452 1wcv_1 SOJ, segregation protei 89.9 0.27 9.3E-06 45.9 4.7 38 227-265 5-43 (257)
453 3cbq_A GTP-binding protein REM 89.9 0.12 4.2E-06 45.9 2.2 21 229-249 24-44 (195)
454 1byi_A Dethiobiotin synthase; 89.9 0.27 9.3E-06 44.6 4.6 34 229-262 2-36 (224)
455 2g6b_A RAS-related protein RAB 89.9 0.17 5.8E-06 43.9 3.0 22 230-251 12-33 (180)
456 3oes_A GTPase rhebl1; small GT 89.9 0.17 5.9E-06 45.0 3.1 24 228-251 24-47 (201)
457 2yv5_A YJEQ protein; hydrolase 89.9 0.22 7.6E-06 47.9 4.0 31 218-249 156-186 (302)
458 2fg5_A RAB-22B, RAS-related pr 89.9 0.18 6E-06 44.6 3.1 23 229-251 24-46 (192)
459 3clv_A RAB5 protein, putative; 89.8 0.17 5.9E-06 44.7 3.0 22 230-251 9-30 (208)
460 3d31_A Sulfate/molybdate ABC t 89.8 0.17 6E-06 49.6 3.2 24 227-250 25-48 (348)
461 1zd9_A ADP-ribosylation factor 89.8 0.18 6E-06 44.4 3.0 23 229-251 23-45 (188)
462 2bov_A RAla, RAS-related prote 89.7 0.17 5.9E-06 45.0 3.0 23 229-251 15-37 (206)
463 2yyz_A Sugar ABC transporter, 89.7 0.19 6.4E-06 49.6 3.4 24 227-250 28-51 (359)
464 3tw8_B RAS-related protein RAB 89.7 0.16 5.4E-06 44.1 2.6 22 229-250 10-31 (181)
465 1vg8_A RAS-related protein RAB 89.7 0.17 6E-06 45.0 3.0 23 229-251 9-31 (207)
466 1oxx_K GLCV, glucose, ABC tran 89.7 0.16 5.6E-06 49.9 3.0 24 227-250 30-53 (353)
467 2obl_A ESCN; ATPase, hydrolase 89.6 0.3 1E-05 48.0 4.8 35 220-254 61-97 (347)
468 3reg_A RHO-like small GTPase; 89.6 0.18 6.2E-06 44.5 3.0 23 229-251 24-46 (194)
469 1ihu_A Arsenical pump-driving 89.6 0.31 1E-05 51.7 5.3 35 227-261 7-41 (589)
470 2it1_A 362AA long hypothetical 89.6 0.19 6.6E-06 49.5 3.4 24 227-250 28-51 (362)
471 3rlf_A Maltose/maltodextrin im 89.6 0.19 6.7E-06 49.8 3.4 24 227-250 28-51 (381)
472 2gf9_A RAS-related protein RAB 89.5 0.19 6.4E-06 44.2 3.0 23 229-251 23-45 (189)
473 2fh5_B SR-beta, signal recogni 89.5 0.18 6.2E-06 45.3 3.0 24 228-251 7-30 (214)
474 1nij_A Hypothetical protein YJ 89.5 0.14 4.7E-06 49.7 2.3 25 228-252 4-28 (318)
475 2gf0_A GTP-binding protein DI- 89.5 0.19 6.5E-06 44.4 3.1 22 229-250 9-30 (199)
476 1g29_1 MALK, maltose transport 89.5 0.2 6.8E-06 49.7 3.4 24 227-250 28-51 (372)
477 2g3y_A GTP-binding protein GEM 89.5 0.18 6E-06 45.8 2.8 21 230-250 39-59 (211)
478 2a5j_A RAS-related protein RAB 89.4 0.19 6.4E-06 44.3 3.0 22 230-251 23-44 (191)
479 1z06_A RAS-related protein RAB 89.4 0.19 6.5E-06 44.2 3.0 23 229-251 21-43 (189)
480 1v43_A Sugar-binding transport 89.4 0.2 7E-06 49.6 3.4 24 227-250 36-59 (372)
481 3cwq_A Para family chromosome 89.4 0.37 1.3E-05 43.4 5.0 34 230-265 2-36 (209)
482 3tkl_A RAS-related protein RAB 89.3 0.2 6.7E-06 44.2 3.0 23 229-251 17-39 (196)
483 3ch4_B Pmkase, phosphomevalona 89.3 0.25 8.7E-06 44.2 3.7 25 228-252 11-35 (202)
484 2xau_A PRE-mRNA-splicing facto 89.3 2 7E-05 46.9 11.6 35 217-251 98-132 (773)
485 1ko7_A HPR kinase/phosphatase; 89.2 0.22 7.7E-06 47.9 3.5 25 227-251 143-167 (314)
486 2p5s_A RAS and EF-hand domain 89.2 0.2 6.8E-06 44.5 3.0 23 228-250 28-50 (199)
487 1x3s_A RAS-related protein RAB 89.2 0.2 7E-06 44.0 3.0 23 229-251 16-38 (195)
488 3ez2_A Plasmid partition prote 89.1 0.42 1.4E-05 47.8 5.6 28 227-254 107-135 (398)
489 1lw7_A Transcriptional regulat 89.1 0.2 6.8E-06 49.6 3.1 26 228-253 170-195 (365)
490 2bcg_Y Protein YP2, GTP-bindin 89.0 0.22 7.4E-06 44.5 3.1 22 230-251 10-31 (206)
491 1zbd_A Rabphilin-3A; G protein 89.0 0.2 6.8E-06 44.6 2.8 22 230-251 10-31 (203)
492 1pui_A ENGB, probable GTP-bind 89.0 0.12 4.2E-06 46.3 1.4 24 227-250 25-48 (210)
493 2atx_A Small GTP binding prote 88.9 0.22 7.7E-06 43.9 3.1 23 229-251 19-41 (194)
494 2fv8_A H6, RHO-related GTP-bin 88.9 0.22 7.6E-06 44.6 3.1 22 229-250 26-47 (207)
495 2j0v_A RAC-like GTP-binding pr 88.9 0.23 7.7E-06 44.6 3.1 22 230-251 11-32 (212)
496 2h17_A ADP-ribosylation factor 88.9 0.2 7E-06 43.6 2.8 23 229-251 22-44 (181)
497 2o52_A RAS-related protein RAB 88.9 0.21 7.3E-06 44.4 2.9 22 229-250 26-47 (200)
498 1moz_A ARL1, ADP-ribosylation 88.8 0.16 5.5E-06 44.2 2.1 24 227-250 17-40 (183)
499 2hup_A RAS-related protein RAB 88.8 0.23 7.9E-06 44.3 3.1 22 229-250 30-51 (201)
500 2gco_A H9, RHO-related GTP-bin 88.8 0.23 7.9E-06 44.2 3.1 23 229-251 26-48 (201)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.2e-50 Score=363.43 Aligned_cols=171 Identities=33% Similarity=0.585 Sum_probs=159.0
Q ss_pred CCCCCCcccEEeccCccccccchHHHHHHHHhhCCCcEEeeC-CCCCCCCCCcchHHHHhhcceEEEEeccccccchhhH
Q 041923 19 MNPQNNKYDVFLSFSRAETRDSFTSHLRSALCQKSIETFIDD-QLIRGDDISESLPDTIAASSISIIIFSERYASSGRCL 97 (529)
Q Consensus 19 ~~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~ 97 (529)
++.+.++|||||||+|+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||+.|.||+
T Consensus 29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl 108 (204)
T 3ozi_A 29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL 108 (204)
T ss_dssp -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence 446789999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCeeEeEEeeecCcchhhcccchhHHHHHHHhhChH-HHHHHHHHHHhhccCCCCCCCCCchhhHH
Q 041923 98 NELLKILECKHN-YGQIVIPVFYRVDPLHVRKQIGIFGDSFLELEERFPE-KMERWRSALTEAANLPGFDSHVFRNESEL 175 (529)
Q Consensus 98 ~El~~~~~~~~~-~~~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~~-~~~~w~~al~~~~~~~g~~~~~~~~e~~~ 175 (529)
+||++|++|.+. .+++||||||+|+|++||+|+|.||++|.+|+.++.+ ++++||.||+++++++||++.++.+|+++
T Consensus 109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~ 188 (204)
T 3ozi_A 109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAI 188 (204)
T ss_dssp HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCHHHH
Confidence 999999999875 5789999999999999999999999999999998754 59999999999999999999998879999
Q ss_pred hhhHHHHHhhcCCc
Q 041923 176 IKKVVNDILEKLPK 189 (529)
Q Consensus 176 i~~i~~~v~~~l~~ 189 (529)
|++|+++|.++|+.
T Consensus 189 i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 189 ADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999864
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=5.8e-49 Score=347.64 Aligned_cols=171 Identities=39% Similarity=0.635 Sum_probs=142.9
Q ss_pred CCCCCCcccEEeccCccccccchHHHHHHHHhhCCCcEEeeC-CCCCCCCCCcchHHHHhhcceEEEEeccccccchhhH
Q 041923 19 MNPQNNKYDVFLSFSRAETRDSFTSHLRSALCQKSIETFIDD-QLIRGDDISESLPDTIAASSISIIIFSERYASSGRCL 97 (529)
Q Consensus 19 ~~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~ 97 (529)
+++..++|||||||+|+|+|++|++||+.+|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|.||+
T Consensus 2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl 81 (176)
T 3jrn_A 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL 81 (176)
T ss_dssp -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence 345678999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeeEeEEeeecCcchhhcccchhHHHHHHHhhC-hHHHHHHHHHHHhhccCCCCCCCCCchhhHHh
Q 041923 98 NELLKILECKHNYGQIVIPVFYRVDPLHVRKQIGIFGDSFLELEERF-PEKMERWRSALTEAANLPGFDSHVFRNESELI 176 (529)
Q Consensus 98 ~El~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~-~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i 176 (529)
+||++|++|.+..+++|+||||+|+|++||+|+|+||++|.+|+.+. .+++++||.||+++++++|+++. .+|+++|
T Consensus 82 ~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i 159 (176)
T 3jrn_A 82 DELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLV 159 (176)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHH
T ss_pred HHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHH
Confidence 99999999999899999999999999999999999999999999874 45599999999999999999994 3499999
Q ss_pred hhHHHHHhhcCCccc
Q 041923 177 KKVVNDILEKLPKEL 191 (529)
Q Consensus 177 ~~i~~~v~~~l~~~~ 191 (529)
++|+++|+++|+.++
T Consensus 160 ~~Iv~~v~~~l~~~~ 174 (176)
T 3jrn_A 160 DKIANEISNKKTIYA 174 (176)
T ss_dssp HHHHHHHHTTCC---
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999998765
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-37 Score=332.34 Aligned_cols=281 Identities=17% Similarity=0.197 Sum_probs=205.8
Q ss_pred cccchhHHhHHHHhc-----cCCEEEEEecCcchHHHHHHHHHH----HHhccCcceEEEEecccccCCCCcHHHHHHHH
Q 041923 212 VGVESKVGEIESLLA-----AAPLVGIWGMGGIGKTTIARAVFN----KISRNFEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 212 vGR~~~l~~l~~~L~-----~~~~v~I~G~gGiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
|||+.++++|.++|. ..++|+|+||||+||||||+++|+ ++..+|+..+|+ ++.+... .+...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv-~vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL-KDSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE-ECCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE-EECCCCC--CCHHHHHHHH
Confidence 499999999999996 368999999999999999999997 678889877777 4443221 4688899999
Q ss_pred HHHHhcCCC-----CCCC------HHHHHHHhCCC-cEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcchhhhhc
Q 041923 283 LSEVLRDEN-----VIPD------IEFNFTRLSRR-KALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQKVLKNG 350 (529)
Q Consensus 283 l~~~~~~~~-----~~~~------~~~l~~~l~~~-~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~ 350 (529)
+..+..... .... ...+++.|.++ |+||||||||+.+++ .+... +||+||||||+..++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~~-----~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQE-----LRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHHH-----TTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccccc-----CCCEEEEEcCCHHHHHHc
Confidence 988876522 1111 57788899996 999999999998877 33322 799999999999988776
Q ss_pred CCCccceEeccCCCc-----------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHH-Hhhcc
Q 041923 351 GVKEKDIYEMKALEC-----------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEVWENAINE-LKRIL 418 (529)
Q Consensus 351 ~~~~~~~~~l~~L~~-----------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~~~~l~~-l~~~~ 418 (529)
+.. ...++|++|+. ...+......+.+.+|+++|+|+||||+.+|+.++.+.. +|...+.. +....
T Consensus 282 ~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQT-CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG 359 (549)
T ss_dssp CSC-EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC
T ss_pred CCC-CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc
Confidence 422 26799999987 111212567788999999999999999999999987753 33333322 22212
Q ss_pred chhHHHHHHHhHhCC-----------CHHhHHHHHhhccccCCCCHHHHHHHHHHc--CCch-----------hhHHHHH
Q 041923 419 NMEIQKVLKISFDGL-----------DDEQKNIFLDIACFFKGEDKEFVIKFLDAC--GFAA-----------QIGISDL 474 (529)
Q Consensus 419 ~~~i~~~l~~s~~~L-----------~~~~~~~l~~la~f~~~~~~~~l~~l~~~~--~~~~-----------~~~l~~L 474 (529)
...+..++..||+.| +++++.+|.+||+||++++.. +.+|.++ |+.. ...+++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 333444444455554 555555555999999887655 6677776 4432 2369999
Q ss_pred hhCCcEEEe----CCeEEcCHHHHHHHHHHHhhcC
Q 041923 475 VDKSLIIIH----GNSITMHDLLQEMGREIVRQES 505 (529)
Q Consensus 475 ~~~sLl~~~----~~~~~mH~lvr~~a~~~~~~e~ 505 (529)
+++||++.. ..+|.|||+||+||++++.+++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999999876 2469999999999998776654
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-35 Score=345.94 Aligned_cols=284 Identities=22% Similarity=0.314 Sum_probs=223.5
Q ss_pred CCcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHH---HhccCcceEEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNK---ISRNFEGSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
+..||||++++++|.++|. +.++|+|+||||+||||||++++++ ....|+..+||..+..... ......+.
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~ 200 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SGLLMKLQ 200 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc--hHHHHHHH
Confidence 5679999999999999994 7889999999999999999999986 3566888888877755322 23444455
Q ss_pred HHHHHHhcCCCC----CCC----HHHHHHHhCCC--cEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcchhhhh-
Q 041923 281 KLLSEVLRDENV----IPD----IEFNFTRLSRR--KALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQKVLKN- 349 (529)
Q Consensus 281 ~ll~~~~~~~~~----~~~----~~~l~~~l~~~--~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~- 349 (529)
.++..+...... ... ...++..+.++ |+||||||||+.++++.+ ++|++||||||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 566655543321 122 44555666655 999999999998776553 589999999999988744
Q ss_pred cCCCccceEeccC-CCc----------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHHHhhcc
Q 041923 350 GGVKEKDIYEMKA-LEC----------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEVWENAINELKRIL 418 (529)
Q Consensus 350 ~~~~~~~~~~l~~-L~~----------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~~~~l~~l~~~~ 418 (529)
.+.. ..+++.+ |+. ...+. ....+.+++|+++|+|+||||+++|++|+.++ ..|...++.+....
T Consensus 274 ~~~~--~~~~~~~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 274 MGPK--HVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CSCB--CCEECCSSCCHHHHHHHHHHHHTSCS-TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred cCCc--eEEEecCCCCHHHHHHHHHHhhCCCh-hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence 2333 6788885 776 11122 34456789999999999999999999998766 46888888886533
Q ss_pred -----------chhHHHHHHHhHhCCCHHhHHHHHhhccccCCC--CHHHHHHHHHHcCCchhhHHHHHhhCCcEEEe-C
Q 041923 419 -----------NMEIQKVLKISFDGLDDEQKNIFLDIACFFKGE--DKEFVIKFLDACGFAAQIGISDLVDKSLIIIH-G 484 (529)
Q Consensus 419 -----------~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~--~~~~l~~l~~~~~~~~~~~l~~L~~~sLl~~~-~ 484 (529)
...+..+|..||+.|++++|.||++||+||++. +.+.+..+|..++......+++|+++|||+.. +
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~ 429 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRN 429 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEES
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecC
Confidence 146899999999999999999999999999874 78899999987777788899999999999987 4
Q ss_pred C---eEEcCHHHHHHHHHHHhhc
Q 041923 485 N---SITMHDLLQEMGREIVRQE 504 (529)
Q Consensus 485 ~---~~~mH~lvr~~a~~~~~~e 504 (529)
+ +|+||+++|+|+++++.++
T Consensus 430 ~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 430 GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCceEEEecHHHHHHHHhhhhHH
Confidence 4 4999999999999986654
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=309.38 Aligned_cols=307 Identities=22% Similarity=0.295 Sum_probs=224.6
Q ss_pred CCcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH---hccCcceEEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI---SRNFEGSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
+..||||+.++++|.++|. +.++|+|+|+||+||||||.+++++. ...|+..++|.++..... ..+...+.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~--~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK--SGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH--HHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch--HHHHHHHH
Confidence 5679999999999999996 57899999999999999999999854 677977777766654311 12222222
Q ss_pred HHHHHHhcCCC----CCCC----HHHHHHHhCC--CcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcchhhhhc
Q 041923 281 KLLSEVLRDEN----VIPD----IEFNFTRLSR--RKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQKVLKNG 350 (529)
Q Consensus 281 ~ll~~~~~~~~----~~~~----~~~l~~~l~~--~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~ 350 (529)
.+...+..... .... ...+...+.+ +++||||||+|+..+++.+ ++|++||||||+..+....
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 33333332111 1122 3445555554 7899999999998766542 5799999999999877654
Q ss_pred CCCccceEecc---CCCc----------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Q 041923 351 GVKEKDIYEMK---ALEC----------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEVWENAINELKRI 417 (529)
Q Consensus 351 ~~~~~~~~~l~---~L~~----------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~~~~l~~l~~~ 417 (529)
+ . ..+++. +|+. ...+. ....+.+.+|+++|+|+||||+++|++++... ..|...++.+...
T Consensus 274 ~-~--~~~~v~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 274 M-G--PKYVVPVESSLGKEKGLEILSLFVNMKK-ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNK 348 (591)
T ss_dssp C-S--CEEEEECCSSCCHHHHHHHHHHHHTSCG-GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSC
T ss_pred C-C--CceEeecCCCCCHHHHHHHHHHHhCCCc-ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHh
Confidence 3 2 455554 5665 11111 23346789999999999999999999998764 3688888877643
Q ss_pred c-----------chhHHHHHHHhHhCCCHHhHHHHHhhccccCC--CCHHHHHHHHHHcCCchhhHHHHHhhCCcEEEe-
Q 041923 418 L-----------NMEIQKVLKISFDGLDDEQKNIFLDIACFFKG--EDKEFVIKFLDACGFAAQIGISDLVDKSLIIIH- 483 (529)
Q Consensus 418 ~-----------~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~l~~~~~~~~~~~l~~L~~~sLl~~~- 483 (529)
. ...+..++..||+.|+++++.+|+++||||.+ ++.+.+..+|..++......++.|+++|||...
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDR 428 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEec
Confidence 2 24789999999999999999999999999875 477888888876655677789999999999876
Q ss_pred -C--CeEEcCHHHHHHHHHHHhhc-------------------CCCCCCCcccccChhhHHHHhhcC
Q 041923 484 -G--NSITMHDLLQEMGREIVRQE-------------------SVNNPGERSRLWHHEDIIEVLTSN 528 (529)
Q Consensus 484 -~--~~~~mH~lvr~~a~~~~~~e-------------------~~~~~~~~~rl~~~~d~~~~l~~~ 528 (529)
+ .+|+||+++|+|+++....+ -...++.+.++|+.+.+++++.-+
T Consensus 429 ~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~ 495 (591)
T 1z6t_A 429 NGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAK 495 (591)
T ss_dssp ETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred CCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcC
Confidence 2 26999999999999872210 022345667788888888887643
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8.9e-33 Score=300.68 Aligned_cols=287 Identities=16% Similarity=0.123 Sum_probs=207.0
Q ss_pred CcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHH--HHhccCcceEEEEecccccCCCCcHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFN--KISRNFEGSCFLQNVRKESQSPGGLARLQQKLL 283 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 283 (529)
...|||+.++++|.++|. +.++|+|+||||+||||||+++++ +++.+|+..++|.++... .....+...+.
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~----~d~~~IL~~Ll 203 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC----NSPETVLEMLQ 203 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS----SSHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC----CCHHHHHHHHH
Confidence 345999999999999997 579999999999999999999997 468889987777777553 23444444444
Q ss_pred HH---HhcCCC-CCC---C--------HHHHHHHh---CCCcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcch
Q 041923 284 SE---VLRDEN-VIP---D--------IEFNFTRL---SRRKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQK 345 (529)
Q Consensus 284 ~~---~~~~~~-~~~---~--------~~~l~~~l---~~~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~ 345 (529)
.. +..... ... . ...+.+.| .++|+||||||||+.++|+.+. +||+||||||++.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChH
Confidence 43 221111 100 1 33455544 6799999999999998888752 7899999999998
Q ss_pred hhhhcCCCccceEecc------CCCcC--------CCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCC--CHHHHHH
Q 041923 346 VLKNGGVKEKDIYEMK------ALECE--------NLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGK--GKEVWEN 409 (529)
Q Consensus 346 ~~~~~~~~~~~~~~l~------~L~~~--------~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~--~~~~~~~ 409 (529)
++..+... ..+.++ +|+.. .... ...++.. +.|+|+||||+++|+.|+.+ +...|..
T Consensus 277 Va~~l~g~--~vy~LeL~d~dL~LS~eEA~eLF~~~~g~--~~eeL~~---eICgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 277 VTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLPR---EVLTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHHHH--SSCEEEECSSSSCCCHHHHHHHHHHHHCC--CTTTHHH---HHCCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred HHHhcCCC--eEEEecCccccCCcCHHHHHHHHHHHcCC--CHHHHHH---HHhCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 87533222 345555 56540 0000 0112223 34999999999999999886 6777865
Q ss_pred HHHHHhhccchhHHHHHHHhHhCCCHHh-HHHHHhhccccCCC--CHHHHHHHHHHcCC-chhhHHHHHhhCCcEEEe--
Q 041923 410 AINELKRILNMEIQKVLKISFDGLDDEQ-KNIFLDIACFFKGE--DKEFVIKFLDACGF-AAQIGISDLVDKSLIIIH-- 483 (529)
Q Consensus 410 ~l~~l~~~~~~~i~~~l~~s~~~L~~~~-~~~l~~la~f~~~~--~~~~l~~l~~~~~~-~~~~~l~~L~~~sLl~~~-- 483 (529)
. ....+..+|..||+.|++++ |.||++||+||.+. +.+.+..+|..++. .+...+++|+++||++..
T Consensus 350 ~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~ 422 (1221)
T 1vt4_I 350 V-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422 (1221)
T ss_dssp C-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSS
T ss_pred C-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCC
Confidence 3 35689999999999999999 99999999999865 67888999987643 466789999999999986
Q ss_pred CCeEEcCHHHHHHHHHHHhhcCCCCCCCcccccChhhHHHHh
Q 041923 484 GNSITMHDLLQEMGREIVRQESVNNPGERSRLWHHEDIIEVL 525 (529)
Q Consensus 484 ~~~~~mH~lvr~~a~~~~~~e~~~~~~~~~rl~~~~d~~~~l 525 (529)
.++|+||+|+++++ ....+.+....|+.++-++.+++
T Consensus 423 ~~rYrMHDLllELr-----~~~~e~~alHrRLvd~Y~~~~vf 459 (1221)
T 1vt4_I 423 ESTISIPSIYLELK-----VKLENEYALHRSIVDHYNIPKTF 459 (1221)
T ss_dssp SSEEBCCCHHHHHH-----HHHSCCTTHHHHHHHHHHHHHHC
T ss_pred CCEEEehHHHHHHh-----cCCCcHHHHHHHHHHHHHhhCcC
Confidence 56899999998843 11113455556666655555443
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=2e-31 Score=235.17 Aligned_cols=118 Identities=19% Similarity=0.313 Sum_probs=109.6
Q ss_pred CCCCCcccEEeccCccccccchHHHHHHHHhhCCCcEEeeC-CCCCCCCCCcchHHHHhhcceEEEEeccccccchhhHH
Q 041923 20 NPQNNKYDVFLSFSRAETRDSFTSHLRSALCQKSIETFIDD-QLIRGDDISESLPDTIAASSISIIIFSERYASSGRCLN 98 (529)
Q Consensus 20 ~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~ 98 (529)
..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.|.++|.++|++|+++|+|+|++|+.|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 35679999999999999 55799999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeeEeEEeeecCcchhhcccchhHHHH
Q 041923 99 ELLKILECKHNYGQIVIPVFYRVDPLHVRKQIGIFGDSFL 138 (529)
Q Consensus 99 El~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~~~~~~~~~ 138 (529)
||..++++...+++.|+||||+|+|++||+|.|.|+++|.
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~ 133 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLA 133 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCC
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHh
Confidence 9999999887788899999999999999999999998754
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.91 E-value=4.7e-26 Score=197.55 Aligned_cols=105 Identities=17% Similarity=0.260 Sum_probs=80.2
Q ss_pred CCCCCcccEEeccCccccccchHHHHHHHHhh--CCCcEEeeC-CCCCCCCCCcchHHHHhhcceEEEEeccccccchhh
Q 041923 20 NPQNNKYDVFLSFSRAETRDSFTSHLRSALCQ--KSIETFIDD-QLIRGDDISESLPDTIAASSISIIIFSERYASSGRC 96 (529)
Q Consensus 20 ~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c 96 (529)
....+.|||||||+++|+ .|+.+|+.+|++ .|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|+||+.|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 356789999999999995 479999999998 599999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeeEeEEeeecCcch
Q 041923 97 LNELLKILECKHNYGQIVIPVFYRVDPLHV 126 (529)
Q Consensus 97 ~~El~~~~~~~~~~~~~v~pvf~~v~p~~v 126 (529)
..|+..|+.+.......||||||+|+++++
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~l 112 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGS
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhC
Confidence 999999999874344478899999986664
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.86 E-value=1.2e-22 Score=179.02 Aligned_cols=101 Identities=16% Similarity=0.301 Sum_probs=91.3
Q ss_pred CCCCcccEEeccCccccccchHHHHHHHHhhC--CCcEEeeC-CCCCCCCCCcchHHHHh-hcceEEEEeccccccchhh
Q 041923 21 PQNNKYDVFLSFSRAETRDSFTSHLRSALCQK--SIETFIDD-QLIRGDDISESLPDTIA-ASSISIIIFSERYASSGRC 96 (529)
Q Consensus 21 ~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~-~s~~~i~v~S~~y~~s~~c 96 (529)
...+.|||||||+++| ..|+.+|..+|+++ |+++|+|+ ++.+|+.+.++|.++|+ +|+++|+|+|++|+.|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 4568999999999999 67999999999985 69999999 99999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHHH-HhCCCeeEeEEeeecC
Q 041923 97 LNELLKILECK-HNYGQIVIPVFYRVDP 123 (529)
Q Consensus 97 ~~El~~~~~~~-~~~~~~v~pvf~~v~p 123 (529)
..|+..|+.+. +..++.||||||+..+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999875 3445679999998654
No 10
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.85 E-value=5.8e-23 Score=179.33 Aligned_cols=100 Identities=19% Similarity=0.296 Sum_probs=90.3
Q ss_pred CCCcccEEeccCccccccchHHH-HHHHHhhC--CCcEEeeC-CCCCCCCCCcchHHHHhhcceEEEEeccccccchhhH
Q 041923 22 QNNKYDVFLSFSRAETRDSFTSH-LRSALCQK--SIETFIDD-QLIRGDDISESLPDTIAASSISIIIFSERYASSGRCL 97 (529)
Q Consensus 22 ~~~~~dvFis~~~~d~~~~~~~~-l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~ 97 (529)
..+.|||||||+++|+ .|+.+ |..+|+++ |+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|++|+.|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4578999999999994 69997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HhCCCeeEeEEee-ecC
Q 041923 98 NELLKILECK-HNYGQIVIPVFYR-VDP 123 (529)
Q Consensus 98 ~El~~~~~~~-~~~~~~v~pvf~~-v~p 123 (529)
.|+..|+.+. +.++..||||||+ +++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 9999988543 5567789999997 444
No 11
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.84 E-value=2.7e-22 Score=179.60 Aligned_cols=101 Identities=21% Similarity=0.290 Sum_probs=87.2
Q ss_pred CCCCCcccEEeccCccccccchHHH-HHHHHhh--CCCcEEeeC-CCCCCCCCCcchHHHHhhcceEEEEeccccccchh
Q 041923 20 NPQNNKYDVFLSFSRAETRDSFTSH-LRSALCQ--KSIETFIDD-QLIRGDDISESLPDTIAASSISIIIFSERYASSGR 95 (529)
Q Consensus 20 ~~~~~~~dvFis~~~~d~~~~~~~~-l~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~ 95 (529)
....+.|||||||+++| ..|+.+ |..+|++ +|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|+||+.|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 35678999999999999 579986 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH-HhCCCeeEeEEeeec
Q 041923 96 CLNELLKILECK-HNYGQIVIPVFYRVD 122 (529)
Q Consensus 96 c~~El~~~~~~~-~~~~~~v~pvf~~v~ 122 (529)
|..|+..|+.+. +.+++.||||||+-.
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i 135 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPI 135 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 999999999654 556678999999843
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=171.90 Aligned_cols=100 Identities=22% Similarity=0.295 Sum_probs=89.2
Q ss_pred CcccEEeccCcccc---------ccchHHHHHH-HHh-hCCCcEEeeC-CCCCCCCCCcchHHHHhhcceEEEEeccccc
Q 041923 24 NKYDVFLSFSRAET---------RDSFTSHLRS-ALC-QKSIETFIDD-QLIRGDDISESLPDTIAASSISIIIFSERYA 91 (529)
Q Consensus 24 ~~~dvFis~~~~d~---------~~~~~~~l~~-~L~-~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~ 91 (529)
+.|||||||+++|+ ++.|+.+|.. .|+ +.|+++|+|+ |+.+|+.+.++|.++|++|+++|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 3568888665 699 7999999999 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHHH-HhCCCeeEeEEeeecC
Q 041923 92 -SSGRCLNELLKILECK-HNYGQIVIPVFYRVDP 123 (529)
Q Consensus 92 -~s~~c~~El~~~~~~~-~~~~~~v~pvf~~v~p 123 (529)
.|.||..|+..++.+. +.++..|||||+.-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999987 6667899999987544
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.76 E-value=2.2e-17 Score=165.79 Aligned_cols=274 Identities=14% Similarity=0.183 Sum_probs=165.2
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEeccccc--CCCCcHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKES--QSPGGLARLQQKLLSE 285 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~l~~~ll~~ 285 (529)
+..|+||+.++++|.+++...+++.|+|++|+|||+|+++++++. . .+|+ ++.... ........+...+...
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 84 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER----P-GILI-DCRELYAERGHITREELIKELQST 84 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS----S-EEEE-EHHHHHHTTTCBCHHHHHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc----C-cEEE-EeecccccccCCCHHHHHHHHHHH
Confidence 567999999999999999855899999999999999999999875 1 3343 333221 0011333444444333
Q ss_pred Hhc----------------CCC--CCCCHHHHHHHh----CC-CcEEEEEcCCCCH---------HHHHHHHhccCCCCC
Q 041923 286 VLR----------------DEN--VIPDIEFNFTRL----SR-RKALIVLDDVTCF---------RQIKFLIRSLDWFMP 333 (529)
Q Consensus 286 ~~~----------------~~~--~~~~~~~l~~~l----~~-~~~LLVlDdv~~~---------~~l~~l~~~~~~~~~ 333 (529)
+.. ... .......+.+.+ .. ++++|||||++.. +.+..+...... .+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~ 163 (350)
T 2qen_A 85 ISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LP 163 (350)
T ss_dssp SCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CT
T ss_pred HHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cC
Confidence 211 000 012233333333 22 4899999999652 223333222111 25
Q ss_pred CcEEEEEeCcchhhhhc----C----C--CccceEeccCCCcC-----------CCCCcccHHHHHHHHHHHhCCChHHH
Q 041923 334 ESRIIITTRDQKVLKNG----G----V--KEKDIYEMKALECE-----------NLPNEVGYQELSEKIINYAQGVPLAL 392 (529)
Q Consensus 334 gs~IliTtR~~~~~~~~----~----~--~~~~~~~l~~L~~~-----------~~~~~~~~~~~~~~i~~~~~G~PLal 392 (529)
+.++|+|++........ . . .....+.+.||+.. .... ....+.+.++++.++|+|+++
T Consensus 164 ~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~~~~~~~i~~~tgG~P~~l 242 (350)
T 2qen_A 164 NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVPENEIEEAVELLDGIPGWL 242 (350)
T ss_dssp TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTTCHHHH
T ss_pred CeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHH
Confidence 78899998875432210 0 1 11247889999871 1111 112457789999999999999
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHhhccchhHHHHHHHhHhCC---CHHhHHHHHhhccccCCCCHHHHHHHHHHc--CCc
Q 041923 393 EILGCFLYG-KGKEVWENAINELKRILNMEIQKVLKISFDGL---DDEQKNIFLDIACFFKGEDKEFVIKFLDAC--GFA 466 (529)
Q Consensus 393 ~~~a~~L~~-~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L---~~~~~~~l~~la~f~~~~~~~~l~~l~~~~--~~~ 466 (529)
..++..+.. .+...+ ...+. ..+...+...+..+ ++..+.++..+|+ ...+...+...+... +..
T Consensus 243 ~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~ 313 (350)
T 2qen_A 243 VVFGVEYLRNGDFGRA---MKRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIP 313 (350)
T ss_dssp HHHHHHHHHHCCHHHH---HHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHhccccHhHH---HHHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCC
Confidence 999876432 222221 11111 11222222223333 7889999999998 345666776665322 222
Q ss_pred ---hhhHHHHHhhCCcEEEeCCeEEc-CHHHHHHHH
Q 041923 467 ---AQIGISDLVDKSLIIIHGNSITM-HDLLQEMGR 498 (529)
Q Consensus 467 ---~~~~l~~L~~~sLl~~~~~~~~m-H~lvr~~a~ 498 (529)
....++.|.+.+||...++.|.+ |+++++|.+
T Consensus 314 ~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 314 EPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 34579999999999988888887 899998864
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.74 E-value=3.4e-17 Score=164.86 Aligned_cols=269 Identities=16% Similarity=0.209 Sum_probs=160.6
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEeccccc-CCCCcHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKES-QSPGGLARLQQKLLSEV 286 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l~~~ll~~~ 286 (529)
+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+ ++.... ........+...+...+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~l~~~l 85 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINELNLP---YIYL-DLRKFEERNYISYKDFLLELQKEI 85 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEE-EGGGGTTCSCCCHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEE-EchhhccccCCCHHHHHHHHHHHH
Confidence 5679999999999999 877 799999999999999999999886532 3444 443320 00011222222222211
Q ss_pred h-------------cC-------C---C------CCCCHHHHHHHhCC---CcEEEEEcCCCCHH-----H----HHHHH
Q 041923 287 L-------------RD-------E---N------VIPDIEFNFTRLSR---RKALIVLDDVTCFR-----Q----IKFLI 325 (529)
Q Consensus 287 ~-------------~~-------~---~------~~~~~~~l~~~l~~---~~~LLVlDdv~~~~-----~----l~~l~ 325 (529)
. .. . . .......+.+.+.. ++++|||||++... . +..+.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~ 165 (357)
T 2fna_A 86 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAY 165 (357)
T ss_dssp HHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHH
T ss_pred HHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHH
Confidence 0 00 0 0 01234444444432 49999999996422 1 22222
Q ss_pred hccCCCCCCcEEEEEeCcchhhhhc--------CC--CccceEeccCCCcC-------------CCCCcccHHHHHHHHH
Q 041923 326 RSLDWFMPESRIIITTRDQKVLKNG--------GV--KEKDIYEMKALECE-------------NLPNEVGYQELSEKII 382 (529)
Q Consensus 326 ~~~~~~~~gs~IliTtR~~~~~~~~--------~~--~~~~~~~l~~L~~~-------------~~~~~~~~~~~~~~i~ 382 (529)
.. .++.++|+|++........ .. .....+.+.||+.. .... .. ...++
T Consensus 166 ~~----~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~----~~~i~ 236 (357)
T 2fna_A 166 DN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD----YEVVY 236 (357)
T ss_dssp HH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC----HHHHH
T ss_pred Hc----CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc----HHHHH
Confidence 22 2477899999976432211 01 11257889999871 1122 11 17899
Q ss_pred HHhCCChHHHHHHHHHhcC-CCHHHHHHHHHHHhhccchhHHHHHHHhH---hCCCHHhHHHHHhhccccCCCCHHHHHH
Q 041923 383 NYAQGVPLALEILGCFLYG-KGKEVWENAINELKRILNMEIQKVLKISF---DGLDDEQKNIFLDIACFFKGEDKEFVIK 458 (529)
Q Consensus 383 ~~~~G~PLal~~~a~~L~~-~~~~~~~~~l~~l~~~~~~~i~~~l~~s~---~~L~~~~~~~l~~la~f~~~~~~~~l~~ 458 (529)
+.++|+|+++..++..+.. .+...|.. .+.......+..-+...+ ..|++..+.++..+|+ . . +...+..
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~ 310 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVKR 310 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHH---HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHHH
Confidence 9999999999999877642 23332321 111111111222222111 1688899999999998 3 3 6666665
Q ss_pred HHH-HcC--C---chhhHHHHHhhCCcEEEeCCeEEc-CHHHHHHH
Q 041923 459 FLD-ACG--F---AAQIGISDLVDKSLIIIHGNSITM-HDLLQEMG 497 (529)
Q Consensus 459 l~~-~~~--~---~~~~~l~~L~~~sLl~~~~~~~~m-H~lvr~~a 497 (529)
.+. ..+ . .....++.|.+.+||...++.|++ |++++++.
T Consensus 311 ~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 311 ALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 432 223 2 245679999999999988778886 89999875
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=9.2e-15 Score=150.22 Aligned_cols=263 Identities=14% Similarity=0.097 Sum_probs=156.0
Q ss_pred CCcccccchhHHhHHHHh-c--------cCCEEEE--EecCcchHHHHHHHHHHHHhcc-----CcceEEEEecccccCC
Q 041923 208 KNHLVGVESKVGEIESLL-A--------AAPLVGI--WGMGGIGKTTIARAVFNKISRN-----FEGSCFLQNVRKESQS 271 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L-~--------~~~~v~I--~G~gGiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~ 271 (529)
+..|+||+.++++|.++| . ..+.+.| +|++|+|||+|++.+++..... +...+.+.++..
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 96 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN---- 96 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG----
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC----
Confidence 467999999999999998 3 3457888 9999999999999999987653 233333333322
Q ss_pred CCcHHHHHHHHHHHHhcCCCC-CCC----HHHHHHHhC--CCcEEEEEcCCCCH--------HHHHHHHhccCCC---C-
Q 041923 272 PGGLARLQQKLLSEVLRDENV-IPD----IEFNFTRLS--RRKALIVLDDVTCF--------RQIKFLIRSLDWF---M- 332 (529)
Q Consensus 272 ~~~~~~l~~~ll~~~~~~~~~-~~~----~~~l~~~l~--~~~~LLVlDdv~~~--------~~l~~l~~~~~~~---~- 332 (529)
......+...++..+...... ... ...+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 245667777777776543221 111 334444553 67999999999643 4444443332211 2
Q ss_pred -CCcEEEEEeCcchhhhh---------cCCCccceEeccCCCcCC------------CCCcccHHHHHHHHHHHhC----
Q 041923 333 -PESRIIITTRDQKVLKN---------GGVKEKDIYEMKALECEN------------LPNEVGYQELSEKIINYAQ---- 386 (529)
Q Consensus 333 -~gs~IliTtR~~~~~~~---------~~~~~~~~~~l~~L~~~~------------~~~~~~~~~~~~~i~~~~~---- 386 (529)
.+..+|+||+...+... .... ..+.+.|++... ........+.+..+++.++
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~--~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIG--FKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCS--EEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcC--CeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 34558888876543211 1122 338889988710 0000122466788999999
Q ss_pred --CChHHHHHHHHHhc------C---CCHHHHHHHHHHHhhccchhH-HHHHHHhHhCCCHHhHHHHHhhcccc----CC
Q 041923 387 --GVPLALEILGCFLY------G---KGKEVWENAINELKRILNMEI-QKVLKISFDGLDDEQKNIFLDIACFF----KG 450 (529)
Q Consensus 387 --G~PLal~~~a~~L~------~---~~~~~~~~~l~~l~~~~~~~i-~~~l~~s~~~L~~~~~~~l~~la~f~----~~ 450 (529)
|+|..+..++.... . -+...+...+... . ...+..++..|++..+.+|..++++. ..
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~-------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN-------EAASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 99976655543321 1 1222222222211 1 23455567889999999999998764 22
Q ss_pred CCHHHHHH----HH-HHcCCc------hhhHHHHHhhCCcEEEe
Q 041923 451 EDKEFVIK----FL-DACGFA------AQIGISDLVDKSLIIIH 483 (529)
Q Consensus 451 ~~~~~l~~----l~-~~~~~~------~~~~l~~L~~~sLl~~~ 483 (529)
++...+.. +. ...+.. ....++.|.+.|||...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 34444332 22 222321 34568999999999876
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.54 E-value=2.6e-15 Score=168.50 Aligned_cols=102 Identities=19% Similarity=0.308 Sum_probs=91.4
Q ss_pred CCCCcccEEeccCccccccchH-HHHHHHHhh-----CCCcEEeeC-CCCCCCCCCcchHHHHhhcceEEEEeccccccc
Q 041923 21 PQNNKYDVFLSFSRAETRDSFT-SHLRSALCQ-----KSIETFIDD-QLIRGDDISESLPDTIAASSISIIIFSERYASS 93 (529)
Q Consensus 21 ~~~~~~dvFis~~~~d~~~~~~-~~l~~~L~~-----~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s 93 (529)
...+.|||||||+++| ..|| .+|...|+. .|+++|+++ |+.+|+.+.++|.++|++||++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 4578999999999999 4677 679999985 589999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHH-HhCCCeeEeEEeeecCc
Q 041923 94 GRCLNELLKILECK-HNYGQIVIPVFYRVDPL 124 (529)
Q Consensus 94 ~~c~~El~~~~~~~-~~~~~~v~pvf~~v~p~ 124 (529)
.||..|+..++.+. ++++++||||||+..|.
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99999999988766 56678899999985543
No 17
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=8.7e-12 Score=126.67 Aligned_cols=260 Identities=18% Similarity=0.103 Sum_probs=158.2
Q ss_pred CCcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhcc------C-cceEEEEecccccCCCCc
Q 041923 208 KNHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRN------F-EGSCFLQNVRKESQSPGG 274 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~------f-~~~~~~~~~~~~~~~~~~ 274 (529)
+..|+||+.++++|.+++. ..+.+.|+|++|+|||+||+.+++.+... + ...+++.++.... ..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~ 95 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG---GT 95 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC---SC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC---CC
Confidence 3679999999999998886 36789999999999999999999987443 2 3333443433221 14
Q ss_pred HHHHHHHHHHHHhcCCCC---CCC---HHHHHHHhCCCcEEEEEcCCCCHH------H-HHHHHhccCCCCCCcEEEEEe
Q 041923 275 LARLQQKLLSEVLRDENV---IPD---IEFNFTRLSRRKALIVLDDVTCFR------Q-IKFLIRSLDWFMPESRIIITT 341 (529)
Q Consensus 275 ~~~l~~~ll~~~~~~~~~---~~~---~~~l~~~l~~~~~LLVlDdv~~~~------~-l~~l~~~~~~~~~gs~IliTt 341 (529)
...+...++..+.+.... ... ...+.+.+..++.+|||||++... . +..+.... .+..+|+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEE
Confidence 556666666666332221 111 455666777766699999996433 2 33444332 677889998
Q ss_pred Ccchhhhh------cCCCccceEeccCCCc-----------C-CCCCcccHHHHHHHHHHHhC---CChH-HHHHHHHHh
Q 041923 342 RDQKVLKN------GGVKEKDIYEMKALEC-----------E-NLPNEVGYQELSEKIINYAQ---GVPL-ALEILGCFL 399 (529)
Q Consensus 342 R~~~~~~~------~~~~~~~~~~l~~L~~-----------~-~~~~~~~~~~~~~~i~~~~~---G~PL-al~~~a~~L 399 (529)
+....... .... ..+.++|++. . ......-..+..+.+++.++ |+|. ++..+-...
T Consensus 172 ~~~~~~~~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp SSTTTTTTSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 87532111 1122 4788888876 1 11111122355677888888 9887 333332221
Q ss_pred --c----CCCHHHHHHHHHHHhhccchhHHHHHHHhHhCCCHHhHHHHHhhccccC-CCCHHHHHHHHHHcCC------c
Q 041923 400 --Y----GKGKEVWENAINELKRILNMEIQKVLKISFDGLDDEQKNIFLDIACFFK-GEDKEFVIKFLDACGF------A 466 (529)
Q Consensus 400 --~----~~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~-~~~~~~l~~l~~~~~~------~ 466 (529)
. .-+.+.+..++.... ...+..+++.|++.++.++..++.... +...+....+....|. .
T Consensus 250 ~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 250 QLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp HHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHH
Confidence 1 235566666555432 245667788999999999888887111 1111223333333221 1
Q ss_pred hhhHHHHHhhCCcEEEe
Q 041923 467 AQIGISDLVDKSLIIIH 483 (529)
Q Consensus 467 ~~~~l~~L~~~sLl~~~ 483 (529)
....+..|.+.|||+..
T Consensus 323 ~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 323 FSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 24568899999999875
No 18
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=4.7e-11 Score=121.19 Aligned_cols=264 Identities=17% Similarity=0.108 Sum_probs=153.0
Q ss_pred CCcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhccC-----cceEEEEecccccCCCCcHH
Q 041923 208 KNHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRNF-----EGSCFLQNVRKESQSPGGLA 276 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~ 276 (529)
+..|+||+.++++|..++. ..+.+.|+|++|+|||+||+.+++.....+ ...+.+.+... .....
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH----RETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT----SCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc----CCCHH
Confidence 4679999999999999884 567899999999999999999999875432 33333333322 33455
Q ss_pred HHHHHHHHHHhcCCCCCC-C----HHHHHHHhC--CCcEEEEEcCCCCHH-------HHHHHHhccCCC--CCCcEEEEE
Q 041923 277 RLQQKLLSEVLRDENVIP-D----IEFNFTRLS--RRKALIVLDDVTCFR-------QIKFLIRSLDWF--MPESRIIIT 340 (529)
Q Consensus 277 ~l~~~ll~~~~~~~~~~~-~----~~~l~~~l~--~~~~LLVlDdv~~~~-------~l~~l~~~~~~~--~~gs~IliT 340 (529)
.+...++..+........ . ...+.+.+. +++++||||+++... .+..+....... ..+..+|+|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 666677766644322111 1 344445553 468999999997543 233334332211 345677888
Q ss_pred eCcchhhhh------cCCCccceEeccCCCc------------CCCCCcccHHHHHHHHHHHhC---CChHHHHHHHHHh
Q 041923 341 TRDQKVLKN------GGVKEKDIYEMKALEC------------ENLPNEVGYQELSEKIINYAQ---GVPLALEILGCFL 399 (529)
Q Consensus 341 tR~~~~~~~------~~~~~~~~~~l~~L~~------------~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~a~~L 399 (529)
|+....... .... ...+.+++++. ..........+..+.+++.++ |+|..+..+....
T Consensus 174 t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 876532110 0111 13677777776 000000112345667888888 9994333222211
Q ss_pred ----c--C---CCHHHHHHHHHHHhhccchhHHHHHHHhHhCCCHHhHHHHHhhccccCCC---CHHHHHHH----HHHc
Q 041923 400 ----Y--G---KGKEVWENAINELKRILNMEIQKVLKISFDGLDDEQKNIFLDIACFFKGE---DKEFVIKF----LDAC 463 (529)
Q Consensus 400 ----~--~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~---~~~~l~~l----~~~~ 463 (529)
. + -+.+.+..++.... ...+..++..|++.++.++..++.+..+. ....+.+. ....
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 1 1 24555555544432 23466778999999999988888543332 33322222 2222
Q ss_pred CC------chhhHHHHHhhCCcEEEe
Q 041923 464 GF------AAQIGISDLVDKSLIIIH 483 (529)
Q Consensus 464 ~~------~~~~~l~~L~~~sLl~~~ 483 (529)
+. .....++.|...|+++..
T Consensus 326 ~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 326 GLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 21 234568899999999874
No 19
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=3.5e-12 Score=129.39 Aligned_cols=264 Identities=17% Similarity=0.109 Sum_probs=152.2
Q ss_pred CCcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhccC--cceEEEEecccccCCCCcHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRNF--EGSCFLQNVRKESQSPGGLARLQ 279 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~ 279 (529)
+..|+||+.+++.|.+++. ..+.+.|+|++|+|||||++.+++.+...+ ...+.+.+.... .....+.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI----DTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH----CSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC----CCHHHHH
Confidence 4679999999999999887 367899999999999999999999876654 233333333221 2344455
Q ss_pred HHHHHHHhcCCCCC-CC----HHHHHHHhC--CCcEEEEEcCCCC------HHHHHHHHhccCC-CCCCcEEEEEeCcch
Q 041923 280 QKLLSEVLRDENVI-PD----IEFNFTRLS--RRKALIVLDDVTC------FRQIKFLIRSLDW-FMPESRIIITTRDQK 345 (529)
Q Consensus 280 ~~ll~~~~~~~~~~-~~----~~~l~~~l~--~~~~LLVlDdv~~------~~~l~~l~~~~~~-~~~gs~IliTtR~~~ 345 (529)
..++..+....... .. ...+.+.+. +++.+||||+++. .+.+..+...... ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 55544443221111 11 333444443 4589999999954 3344455443321 134567788887654
Q ss_pred hhhhc------CCCccceEeccCCCcC------------CCCCcccHHHHHHHHHHHhC---CChHHHHHHHHHhc----
Q 041923 346 VLKNG------GVKEKDIYEMKALECE------------NLPNEVGYQELSEKIINYAQ---GVPLALEILGCFLY---- 400 (529)
Q Consensus 346 ~~~~~------~~~~~~~~~l~~L~~~------------~~~~~~~~~~~~~~i~~~~~---G~PLal~~~a~~L~---- 400 (529)
..... ... ...+.+++++.. .........+..+.+++.++ |+|..+..+.....
T Consensus 175 ~~~~~~~~~~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 175 FVDLLDPRVKSSLS-EEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGCTTHHHHTTT-TEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCC-CeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 32211 111 147888888861 11111122455667777777 99984443322221
Q ss_pred --C---CCHHHHHHHHHHHhhccchhHHHHHHHhHhCCCHHhHHHHHhhccccC-C---CCHHHH----HHHHHHcCC--
Q 041923 401 --G---KGKEVWENAINELKRILNMEIQKVLKISFDGLDDEQKNIFLDIACFFK-G---EDKEFV----IKFLDACGF-- 465 (529)
Q Consensus 401 --~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~-~---~~~~~l----~~l~~~~~~-- 465 (529)
+ -+.+.+..++... ....+...+..+++..+.++..++.+.. + +....+ ..+....|.
T Consensus 254 ~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~ 326 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEI-------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEA 326 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCCccCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCC
Confidence 1 2344444444332 1345677788999999999988886432 2 223222 222222221
Q ss_pred ----chhhHHHHHhhCCcEEEe
Q 041923 466 ----AAQIGISDLVDKSLIIIH 483 (529)
Q Consensus 466 ----~~~~~l~~L~~~sLl~~~ 483 (529)
.....++.|.+.|+|+..
T Consensus 327 ~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 327 VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 134568999999999865
No 20
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=1.8e-11 Score=124.44 Aligned_cols=285 Identities=15% Similarity=0.087 Sum_probs=166.5
Q ss_pred CCcccccchhHHhHHHHhc------cCC--EEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA------AAP--LVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQ 279 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~------~~~--~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 279 (529)
++.++||+.++++|..++. ... .+.|+|++|+|||+|++.+++.........+...++.. ......+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~----~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI----YRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT----CCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc----CCCHHHHH
Confidence 4679999999999999886 224 89999999999999999999987654322333333322 23455666
Q ss_pred HHHHHHHhcCCCCCC-C----HHHHHHHh--CCCcEEEEEcCCCC--HHHHHHHHhccCCCC----CCcEEEEEeCcchh
Q 041923 280 QKLLSEVLRDENVIP-D----IEFNFTRL--SRRKALIVLDDVTC--FRQIKFLIRSLDWFM----PESRIIITTRDQKV 346 (529)
Q Consensus 280 ~~ll~~~~~~~~~~~-~----~~~l~~~l--~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~----~gs~IliTtR~~~~ 346 (529)
..++..+........ . ...+...+ .+++.+||||+++. ...+..|...+.... .+..+|++|+....
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 666666543322111 1 22333333 25689999999974 556666666554322 36678888876543
Q ss_pred hhhcC------CCccceEeccCCCc------------CCCCCcccHHHHHHHHHHHh---------CCChHHHHHHHHHh
Q 041923 347 LKNGG------VKEKDIYEMKALEC------------ENLPNEVGYQELSEKIINYA---------QGVPLALEILGCFL 399 (529)
Q Consensus 347 ~~~~~------~~~~~~~~l~~L~~------------~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~~a~~L 399 (529)
..... .. ...+.++|++. .......-..+..+.+++.+ +|+|..+..+....
T Consensus 172 ~~~l~~~~~~r~~-~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 172 LNNLDPSTRGIMG-KYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHTSCHHHHHHHT-TCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCC-CceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 22210 01 13688888876 10000012246677888888 78886555443322
Q ss_pred c------C---CCHHHHHHHHHHHhhccchhHHHHHHHhHhCCCHHhHHHHHhhcccc---C--CCCHHHHHHHHHH---
Q 041923 400 Y------G---KGKEVWENAINELKRILNMEIQKVLKISFDGLDDEQKNIFLDIACFF---K--GEDKEFVIKFLDA--- 462 (529)
Q Consensus 400 ~------~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~---~--~~~~~~l~~l~~~--- 462 (529)
. + -+.+....+..... . ..+...+..|++..+.++..++.+. . ..+...+......
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~---~----~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL---F----GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS---C----CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh---h----hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 1 12233333222221 1 1223446778888898888888654 2 3444554443322
Q ss_pred -cCC------chhhHHHHHhhCCcEEEe-C-------Ce---EE----cCHHHHHHHHHHHhhc
Q 041923 463 -CGF------AAQIGISDLVDKSLIIIH-G-------NS---IT----MHDLLQEMGREIVRQE 504 (529)
Q Consensus 463 -~~~------~~~~~l~~L~~~sLl~~~-~-------~~---~~----mH~lvr~~a~~~~~~e 504 (529)
.+. .....+..|.+.|||... . ++ ++ .|++++.+..+++.+|
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 221 233568999999999985 2 22 22 2677777777776654
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.26 E-value=7.9e-11 Score=111.03 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=105.7
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcce--------------------EEEEe
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGS--------------------CFLQN 264 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~--------------------~~~~~ 264 (529)
...|+||+.+++.|..++. ..+.+.|+|++|+|||+||+.+++.+...+... .+...
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 101 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEE
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEec
Confidence 4579999999999999998 235899999999999999999998775433110 01000
Q ss_pred cccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeC
Q 041923 265 VRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTR 342 (529)
Q Consensus 265 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR 342 (529)
.. ..........++..+... ...+++.+|||||++ +...++.+...+.....+..+|+||+
T Consensus 102 ~~-----~~~~~~~~~~~~~~~~~~------------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 102 AA-----SRTKVEDTRDLLDNVQYA------------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp TT-----CGGGHHHHHHHHHSCCCS------------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred Cc-----ccccHHHHHHHHHHhhhc------------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 00 000111111111111000 013468999999996 45666677666554456788888887
Q ss_pred cchhhhhcCCCccceEeccCCCcC-----------CCCCcccHHHHHHHHHHHhCCChHHHHHHHHHh
Q 041923 343 DQKVLKNGGVKEKDIYEMKALECE-----------NLPNEVGYQELSEKIINYAQGVPLALEILGCFL 399 (529)
Q Consensus 343 ~~~~~~~~~~~~~~~~~l~~L~~~-----------~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L 399 (529)
........-......+.+++++.. .... .-..+..+.|++.++|+|..+..+...+
T Consensus 165 ~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 165 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 643221100111267888888861 0111 1123567789999999999888776543
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.18 E-value=3.3e-10 Score=105.20 Aligned_cols=172 Identities=16% Similarity=0.162 Sum_probs=98.7
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...++||+..++.|.+++. ..+.+.|+|.+|+|||+||+.+++.+... +...+...+... ......+...+ .
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~ 90 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD----ERGIDVVRHKI-K 90 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC----TTCHHHHHHHH-H
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc----ccChHHHHHHH-H
Confidence 4679999999999999998 34459999999999999999999986443 333333332221 12222222222 1
Q ss_pred HHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCcchhhhhcCCCccceEeccC
Q 041923 285 EVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRDQKVLKNGGVKEKDIYEMKA 362 (529)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~l~~ 362 (529)
....... ....++.+|||||++. ....+.+...+.....++.+|+||+........-......+.+.+
T Consensus 91 ~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~ 160 (226)
T 2chg_A 91 EFARTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKP 160 (226)
T ss_dssp HHHTSCC----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred HHhcccC----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCC
Confidence 1111100 1135789999999974 344555555444445678888888764321110001114677777
Q ss_pred CCcCC-----------CCCcccHHHHHHHHHHHhCCChHHHHHH
Q 041923 363 LECEN-----------LPNEVGYQELSEKIINYAQGVPLALEIL 395 (529)
Q Consensus 363 L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLal~~~ 395 (529)
++... ... .-..+..+.+++.++|+|..+..+
T Consensus 161 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 77500 000 011244556667777777654433
No 23
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.02 E-value=3.1e-08 Score=97.89 Aligned_cols=250 Identities=14% Similarity=0.090 Sum_probs=138.6
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
...|+|++..++.+..++. ....+.|+|++|+|||+||+.+++..... +...+.... .....+..
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~----~~~~~~~~~----~~~~~l~~ 82 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN----LRVTSGPAI----EKPGDLAA 82 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC----EEEECTTTC----CSHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC----EEEEecccc----CChHHHHH
Confidence 4679999999999988875 34789999999999999999999876432 222222111 11111111
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCH--HHHHHHHhccCCC------------------CCCcEEEEE
Q 041923 281 KLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCF--RQIKFLIRSLDWF------------------MPESRIIIT 340 (529)
Q Consensus 281 ~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~--~~l~~l~~~~~~~------------------~~gs~IliT 340 (529)
. +.. ...++.+|+||+++.. .....+...+... .++..+|.|
T Consensus 83 ~----l~~--------------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 83 I----LAN--------------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp H----HTT--------------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred H----HHH--------------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 1 100 0135679999999743 3333333322111 023566666
Q ss_pred eCcchhhhhcCCCcc-ceEeccCCCc-----------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCC------
Q 041923 341 TRDQKVLKNGGVKEK-DIYEMKALEC-----------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGK------ 402 (529)
Q Consensus 341 tR~~~~~~~~~~~~~-~~~~l~~L~~-----------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~------ 402 (529)
|.........-.... ..+.+.+++. ..... .-..+..+.++++++|+|..+..+...+...
T Consensus 145 t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~ 223 (324)
T 1hqc_A 145 TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGE 223 (324)
T ss_dssp ESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSC
T ss_pred CCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcC
Confidence 664322111101111 4677777765 11111 1224567788888999998887776554321
Q ss_pred ---CHHHHHHHHHHHhhccchhHHHHHHHhHhCCCHHhHHHHHhhcccc--CCCCHHHHHHHHHHcCCchhhHHHH-Hhh
Q 041923 403 ---GKEVWENAINELKRILNMEIQKVLKISFDGLDDEQKNIFLDIACFF--KGEDKEFVIKFLDACGFAAQIGISD-LVD 476 (529)
Q Consensus 403 ---~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~--~~~~~~~l~~l~~~~~~~~~~~l~~-L~~ 476 (529)
+.+.....+.. +......+++.++..+..+.... ++.....++..+..........++. +++
T Consensus 224 ~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~ 291 (324)
T 1hqc_A 224 EVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIR 291 (324)
T ss_dssp SCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHH
Confidence 12222222211 12234567777777777665442 3345666666653322222333444 888
Q ss_pred CCcEEEeCCeEEcCHHHHHH
Q 041923 477 KSLIIIHGNSITMHDLLQEM 496 (529)
Q Consensus 477 ~sLl~~~~~~~~mH~lvr~~ 496 (529)
.++|........+-+...++
T Consensus 292 ~~li~~~~~g~~~~~~~~~~ 311 (324)
T 1hqc_A 292 QGLLKRTPRGRVPTELAYRH 311 (324)
T ss_dssp TTSEEEETTEEEECHHHHHH
T ss_pred hcchhcCCccceecHHHHHH
Confidence 99998875555555555444
No 24
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=2.2e-09 Score=106.01 Aligned_cols=171 Identities=17% Similarity=0.241 Sum_probs=100.0
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...++|++..++.|.+++. ..+.+.|+|++|+|||++|+.+++.+... +...+...+... ..+... .+.++.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~----~~~~~~-i~~~~~ 94 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD----DRGIDV-VRNQIK 94 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS----CCSHHH-HHTHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc----ccChHH-HHHHHH
Confidence 4679999999999999987 33449999999999999999999986432 222233222211 112222 222222
Q ss_pred HHhcCCCCCCCHHHHHHHh-CCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCcchh-hhhcCCCccceEec
Q 041923 285 EVLRDENVIPDIEFNFTRL-SRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRDQKV-LKNGGVKEKDIYEM 360 (529)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~l-~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~~~~-~~~~~~~~~~~~~l 360 (529)
.+..... .+ .+++.++|+||++. ....+.|...+.....++.+|+||....- .... ......+++
T Consensus 95 ~~~~~~~----------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l-~sr~~~i~~ 163 (323)
T 1sxj_B 95 HFAQKKL----------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL-QSQCAILRY 163 (323)
T ss_dssp HHHHBCC----------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH-HTTSEEEEC
T ss_pred HHHhccc----------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH-HhhceEEee
Confidence 2211000 11 34588999999974 34444454444334467788888876432 1111 011157888
Q ss_pred cCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHH-HHHH
Q 041923 361 KALECEN-----------LPNEVGYQELSEKIINYAQGVPLA-LEIL 395 (529)
Q Consensus 361 ~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLa-l~~~ 395 (529)
.+++... ... .-..+.+..+++.++|+|.. +..+
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQIIKLEDV-KYTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8887610 000 11235667888999999954 4444
No 25
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=7e-09 Score=102.54 Aligned_cols=174 Identities=20% Similarity=0.181 Sum_probs=101.1
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccC-cceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNF-EGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...++|++..++.|.+++. ..+.+.|+|++|+|||++|+.+++.+.... ...+...+.... .+... ....+.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~ 98 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE----RGINV-IREKVK 98 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH----HHHHT-THHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc----CchHH-HHHHHH
Confidence 4679999999999999987 445699999999999999999999864332 212222221110 01111 111111
Q ss_pred HHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCcchhh-hhcCCCccceEecc
Q 041923 285 EVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRDQKVL-KNGGVKEKDIYEMK 361 (529)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~~~~~-~~~~~~~~~~~~l~ 361 (529)
....... ...+++.++|+|+++. .+..+.|...+.....++++|+||....-. ... ......+.+.
T Consensus 99 ~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l-~sr~~~~~~~ 167 (327)
T 1iqp_A 99 EFARTKP----------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI-QSRCAIFRFR 167 (327)
T ss_dssp HHHHSCC----------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH-HHTEEEEECC
T ss_pred HHHhhCC----------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHH-HhhCcEEEec
Confidence 1110000 1125678999999973 455566665554445678888888764321 110 0011467777
Q ss_pred CCCcC-----------CCCCcccHHHHHHHHHHHhCCChHHHHHHHHH
Q 041923 362 ALECE-----------NLPNEVGYQELSEKIINYAQGVPLALEILGCF 398 (529)
Q Consensus 362 ~L~~~-----------~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~ 398 (529)
+++.. .... .-..+..+.+++.++|+|..+..+...
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 77751 1111 122456677888899999866554433
No 26
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.80 E-value=2.9e-08 Score=100.09 Aligned_cols=178 Identities=16% Similarity=0.142 Sum_probs=102.1
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...++|++..++.|.+.+. ....+.|+|++|+|||++|+.+++.+........ . ......-...+..
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~--~--------~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--T--------PCGVCDNCREIEQ 84 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS--S--------CCSSSHHHHHHHT
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC--C--------CCcccHHHHHHhc
Confidence 4569999999999999987 2457899999999999999999987753321100 0 0000000001100
Q ss_pred HH-------hcC-CCCCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcchh-hh
Q 041923 285 EV-------LRD-ENVIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQKV-LK 348 (529)
Q Consensus 285 ~~-------~~~-~~~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~~~-~~ 348 (529)
.. ... .........+.+.+. +++.++|+||++ +....+.|...+.....+..+|++|.+..- ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 00 000 011222344444433 457899999996 445566666665544567777777765322 11
Q ss_pred hcCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHHHHHHHH
Q 041923 349 NGGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPLALEILGC 397 (529)
Q Consensus 349 ~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 397 (529)
.. ......+++.+++... ... ....+.+..+++.++|+|..+..+..
T Consensus 165 ~l-~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 165 TI-LSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HH-HTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HH-HhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 1112577888877610 000 11235567788889999987765543
No 27
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.77 E-value=5.1e-08 Score=95.87 Aligned_cols=170 Identities=15% Similarity=0.157 Sum_probs=98.4
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc-cCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR-NFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...++|++..++.|.+++. ..+.+.|+|++|+|||++|+.+++.+.. .+...+...+...... ...+......+..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 94 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-IDVVRHKIKEFAR 94 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC-TTTSSHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC-hHHHHHHHHHHHh
Confidence 4579999999999999987 3345999999999999999999998632 2222222222221111 1111111111110
Q ss_pred HHhcCCCCCCCHHHHHHHh-CCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCcch-hhhhcCCCccceEec
Q 041923 285 EVLRDENVIPDIEFNFTRL-SRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRDQK-VLKNGGVKEKDIYEM 360 (529)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~l-~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~l 360 (529)
. . .+ .+++.++|+|+++. .+..+.|...+.....++.+|+||.... +..... .....+++
T Consensus 95 ~----~-----------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~-sr~~~i~~ 158 (319)
T 2chq_A 95 T----A-----------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ-SRCAVFRF 158 (319)
T ss_dssp S----C-----------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH-TTCEEEEC
T ss_pred c----C-----------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH-hhCeEEEe
Confidence 0 0 01 25678999999973 4556667777765566778888876543 111110 11146777
Q ss_pred cCCCc-----------CCCCCcccHHHHHHHHHHHhCCChHHHHHH
Q 041923 361 KALEC-----------ENLPNEVGYQELSEKIINYAQGVPLALEIL 395 (529)
Q Consensus 361 ~~L~~-----------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 395 (529)
.+++. ..... .-..+....+++.++|++..+...
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 159 KPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CCCCHHHHHHHHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 77765 01111 112345566777778877755433
No 28
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.71 E-value=4.8e-08 Score=88.13 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=42.0
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...|+||+.+++++.+.+. ..+.+.|+|.+|+|||+||+.+++.+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999987 5678999999999999999999998644
No 29
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.66 E-value=4.8e-07 Score=89.86 Aligned_cols=241 Identities=14% Similarity=0.117 Sum_probs=126.7
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
...|+|++..++.+..++. ..+.|.|+|++|+|||+||+.+++.....| ...+.... .....+..
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~----~~~~~~~~----~~~~~~~~ 99 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI----KTTAAPMI----EKSGDLAA 99 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE----EEEEGGGC----CSHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEecchhc----cchhHHHH
Confidence 4679999999999999886 235799999999999999999988764332 22222111 11111111
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccCCCC------------------CCcEEEEE
Q 041923 281 KLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLDWFM------------------PESRIIIT 340 (529)
Q Consensus 281 ~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~------------------~gs~IliT 340 (529)
.+. . ..++.+|+||+++. ......|...+.... ++..+|.|
T Consensus 100 -~~~-----------------~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 160 (338)
T 3pfi_A 100 -ILT-----------------N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGA 160 (338)
T ss_dssp -HHH-----------------T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEE
T ss_pred -HHH-----------------h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEe
Confidence 110 0 24567999999973 344444443322111 12456666
Q ss_pred eCcchhhh-h--cCCCccceEeccCCCcC-----------CCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHH
Q 041923 341 TRDQKVLK-N--GGVKEKDIYEMKALECE-----------NLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEV 406 (529)
Q Consensus 341 tR~~~~~~-~--~~~~~~~~~~l~~L~~~-----------~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~ 406 (529)
|....... . ...+ ..+.+.+++.. .... ....+..+.+++.+.|+|..+..+...+..
T Consensus 161 tn~~~~l~~~L~~R~~--~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~----- 232 (338)
T 3pfi_A 161 TTRAGMLSNPLRDRFG--MQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRD----- 232 (338)
T ss_dssp ESCGGGSCHHHHTTCS--EEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHH-----
T ss_pred CCCccccCHHHHhhcC--EEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHH-----
Confidence 55432211 1 1122 56778777651 0111 112344556666777777555444332200
Q ss_pred HHHHHHHHhh---ccchhHHHH---HHHhHhCCCHHhHHHHHhhccccC-CCCHHHHHHHHHHcCCchhhHHH-HHhhCC
Q 041923 407 WENAINELKR---ILNMEIQKV---LKISFDGLDDEQKNIFLDIACFFK-GEDKEFVIKFLDACGFAAQIGIS-DLVDKS 478 (529)
Q Consensus 407 ~~~~l~~l~~---~~~~~i~~~---l~~s~~~L~~~~~~~l~~la~f~~-~~~~~~l~~l~~~~~~~~~~~l~-~L~~~s 478 (529)
| ..... .....+... +......++..++.++..++-... ..+...+...+..........++ .|++.+
T Consensus 233 ~----a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~g 308 (338)
T 3pfi_A 233 F----ADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANG 308 (338)
T ss_dssp H----HHHTTCSEECHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTT
T ss_pred H----HHhhcCCccCHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcC
Confidence 0 00000 011122222 222334566665667766665522 23566666665433223333455 789999
Q ss_pred cEEEe-CCeE
Q 041923 479 LIIIH-GNSI 487 (529)
Q Consensus 479 Ll~~~-~~~~ 487 (529)
+|... .|+.
T Consensus 309 li~~~~~g~~ 318 (338)
T 3pfi_A 309 YIERTAKGRI 318 (338)
T ss_dssp SEEEETTEEE
T ss_pred ceecCCCccc
Confidence 99887 4443
No 30
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.3e-06 Score=85.24 Aligned_cols=113 Identities=13% Similarity=0.134 Sum_probs=72.4
Q ss_pred CcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhccCc------ceEEEEecccccCCCCcHH
Q 041923 209 NHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRNFE------GSCFLQNVRKESQSPGGLA 276 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~~~ 276 (529)
..+.||++|+++|...|. ..+.+.|+|++|+|||++++.+++++..... ..+...+... .....
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~----~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE----LAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC----CC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc----cCCHH
Confidence 348999999999998886 6788999999999999999999998864321 1222223222 23445
Q ss_pred HHHHHHHHHHhcCCCC-CCCHHHHH---HHh---CCCcEEEEEcCCCCH---HHHHHHH
Q 041923 277 RLQQKLLSEVLRDENV-IPDIEFNF---TRL---SRRKALIVLDDVTCF---RQIKFLI 325 (529)
Q Consensus 277 ~l~~~ll~~~~~~~~~-~~~~~~l~---~~l---~~~~~LLVlDdv~~~---~~l~~l~ 325 (529)
.+...+..++.+.... ......+. ..+ .+++++++||+++.. +.+..+.
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~ 154 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFE 154 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHH
Confidence 5666677666544321 12233333 332 356899999999753 4444444
No 31
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=1.4e-06 Score=86.99 Aligned_cols=181 Identities=15% Similarity=0.160 Sum_probs=97.2
Q ss_pred CCcccccchhHHhHHHHhcc--CCEEEEEecCcchHHHHHHHHHHHHhcc--CcceEEEEecccccCCCCcHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAA--APLVGIWGMGGIGKTTIARAVFNKISRN--FEGSCFLQNVRKESQSPGGLARLQQKLL 283 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~--~~~v~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll 283 (529)
...++|++..++.|..++.. .+.+.|+|++|+|||+||+.+++.+... +...+...+... ..+...+. ...
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~ 110 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD----ERGISIVR-EKV 110 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS----CCCHHHHT-THH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc----ccchHHHH-HHH
Confidence 46799999999999999982 2459999999999999999999976421 222232222211 12222222 212
Q ss_pred HHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCcch-hhhhcCCCccceEec
Q 041923 284 SEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRDQK-VLKNGGVKEKDIYEM 360 (529)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~l 360 (529)
...................-..++-+|++|+++. ......|...+.......++|++|.... +.... ......+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l-~sR~~~i~~ 189 (353)
T 1sxj_D 111 KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL-ASQCSKFRF 189 (353)
T ss_dssp HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH-HHHSEEEEC
T ss_pred HHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchh-hccCceEEe
Confidence 1111111100000001111124567999999963 3444555544433345667777775432 11110 001145667
Q ss_pred cCCCc-----------CCCCCcccHHHHHHHHHHHhCCChHHHHHH
Q 041923 361 KALEC-----------ENLPNEVGYQELSEKIINYAQGVPLALEIL 395 (529)
Q Consensus 361 ~~L~~-----------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 395 (529)
.+++. ..... .-..+..+.|++.++|+|..+..+
T Consensus 190 ~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 190 KALDASNAIDRLRFISEQENV-KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 77665 01111 122456677888888888765443
No 32
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.55 E-value=3e-07 Score=82.43 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=42.0
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...++||+.+++.+.+.+. ..+.+.|+|.+|+|||+||+.+++.+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999987 5778999999999999999999998754
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.54 E-value=1.3e-06 Score=87.40 Aligned_cols=66 Identities=23% Similarity=0.404 Sum_probs=51.1
Q ss_pred hhHHhhhHHHHHhhcCCccccCCCCCCCccccccCCCCcccccchhHHhHHHHhc--------------cCCEEEEEecC
Q 041923 172 ESELIKKVVNDILEKLPKELSCNNNIHLPEVLSCNNKNHLVGVESKVGEIESLLA--------------AAPLVGIWGMG 237 (529)
Q Consensus 172 e~~~i~~i~~~v~~~l~~~~~~~~~~~~p~~~~~~~~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~g 237 (529)
+...++.+...+..+.++.. -..++|.+..++.|.+.+. ..+.+.|+|++
T Consensus 63 ~~~~~~~i~~~i~~~~~~~~----------------~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gpp 126 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGPPVN----------------WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPP 126 (357)
T ss_dssp CHHHHHHHHHHTBCCSCCCC----------------GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESST
T ss_pred ChHHHHHHHhhcccCCCCCC----------------HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCC
Confidence 56667777766655543322 4579999999999988763 36789999999
Q ss_pred cchHHHHHHHHHHHHh
Q 041923 238 GIGKTTIARAVFNKIS 253 (529)
Q Consensus 238 GiGKTtLa~~~~~~~~ 253 (529)
|+|||+||+.+++...
T Consensus 127 GtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 127 GTGKTLIGKCIASQSG 142 (357)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcC
Confidence 9999999999998763
No 34
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.48 E-value=4.6e-06 Score=80.03 Aligned_cols=46 Identities=17% Similarity=0.084 Sum_probs=35.9
Q ss_pred CCcccccchhHHhHHHH-------hc-----cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESL-------LA-----AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~-------L~-----~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++|....++++... +. ..+.+.|+|++|+|||+||+.+++...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 35688888877766663 21 456799999999999999999998753
No 35
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.43 E-value=2.1e-06 Score=82.98 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=40.4
Q ss_pred CCcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...++|.+..+++|.+.+. ..+.+.|+|++|+|||+||+.+++....
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4679999999999998773 4578999999999999999999987643
No 36
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.42 E-value=3.8e-07 Score=85.58 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=39.6
Q ss_pred CCcccccc---hhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 208 KNHLVGVE---SKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 208 ~~~fvGR~---~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
.+.|+|++ ..++.+..+.. ..+.+.|+|++|+|||+||+.+++..........++
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46788743 45556666555 578999999999999999999999876553334444
No 37
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=7.5e-06 Score=86.08 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=40.2
Q ss_pred CCcccccchhHHhHHHHhcc-------------------CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAA-------------------APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~-------------------~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...++|++..+++|.+++.. .+.+.|+|++|+|||+||+.+++.+
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46799999999999999862 3799999999999999999999887
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.37 E-value=1.3e-05 Score=76.27 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=38.6
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
-..++|.+...+.|.+++. ..+.+.|+|++|+|||+||+.+++....
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4679999998888877653 3457899999999999999999987643
No 39
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=3.5e-06 Score=84.10 Aligned_cols=45 Identities=29% Similarity=0.338 Sum_probs=38.9
Q ss_pred CCcccccchhHHhHHHHh-c--cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLL-A--AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L-~--~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...++|.+..++.|.+++ . ..+.+.|+|++|+|||||++.++..+
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999998 5 33339999999999999999999865
No 40
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.32 E-value=1.8e-06 Score=74.39 Aligned_cols=108 Identities=17% Similarity=0.083 Sum_probs=64.3
Q ss_pred cccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHH
Q 041923 210 HLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSE 285 (529)
Q Consensus 210 ~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 285 (529)
.++|+...++++.+.+. ....|.|+|.+|+|||+||+.+++.....-...+ .+...... ......
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v--~~~~~~~~-~~~~~~-------- 70 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV--YRELTPDN-APQLND-------- 70 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE--EEECCTTT-SSCHHH--------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE--EECCCCCc-chhhhc--------
Confidence 58999999999998875 5667899999999999999999875433222222 23322222 111111
Q ss_pred HhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 286 VLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 286 ~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
.+... ..-+|+||+++ ..+....++..+.......++|+||..
T Consensus 71 ------------~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 71 ------------FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ------------HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ------------HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 11111 23478999997 334444454444333445678777764
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.30 E-value=7e-06 Score=84.42 Aligned_cols=121 Identities=14% Similarity=0.203 Sum_probs=67.7
Q ss_pred CCccc-ccchhH--HhHHHHhc--c-CCEEEEEecCcchHHHHHHHHHHHHhccCcce-EEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLV-GVESKV--GEIESLLA--A-APLVGIWGMGGIGKTTIARAVFNKISRNFEGS-CFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fv-GR~~~l--~~l~~~L~--~-~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~ 280 (529)
.+.|+ |....+ ..+..... + ...+.|+|.+|+||||||+.+++.+...++.. +...+. ..+..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~----------~~~~~ 173 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLN 173 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH----------HHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHH
Confidence 35566 655443 22222222 2 56899999999999999999999886665332 222221 12223
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCH----HHHHHHHhccCC-CCCCcEEEEEeCc
Q 041923 281 KLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCF----RQIKFLIRSLDW-FMPESRIIITTRD 343 (529)
Q Consensus 281 ~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~----~~l~~l~~~~~~-~~~gs~IliTtR~ 343 (529)
.+...+... ....+...+..++.+|+|||++.. ...+.+...+.. ...|..||+||.+
T Consensus 174 ~~~~~~~~~-----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 174 DLVDSMKEG-----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHHTT-----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHHHcc-----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 333333211 233444555546789999999522 222333332211 1356788888876
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.29 E-value=7.8e-06 Score=79.42 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=39.9
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
-..++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.+++...
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4679999999999998763 357899999999999999999998764
No 43
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.26 E-value=1.6e-05 Score=78.19 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=40.1
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
-..++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.+++....
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 3679999999999998872 3467999999999999999999988643
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.25 E-value=3e-05 Score=76.20 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=38.3
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
-..++|.+...+.|.+.+. ..+.+.|+|++|+|||+||+.+++..
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3678999998888887662 34789999999999999999999876
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.25 E-value=1.3e-05 Score=80.40 Aligned_cols=48 Identities=27% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.+.|+|++...+.+..++. ..+.+.|+|++|+|||+||+.+++.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4679999998777555443 23589999999999999999999988643
No 46
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.22 E-value=9e-06 Score=82.32 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=39.9
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
-..++|.+..++.|..++. ..+.+.|+|.+|+|||+||+.++++..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 4679999999999999873 357899999999999999999988753
No 47
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.22 E-value=2.5e-05 Score=77.91 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=39.2
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
-..++|.+..++.|.+.+. ..+.|.|+|++|+|||+||+.+++...
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4579999999999998773 245699999999999999999999874
No 48
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.22 E-value=7.1e-06 Score=73.34 Aligned_cols=117 Identities=20% Similarity=0.180 Sum_probs=63.9
Q ss_pred CCccccc----chhHHhHHHHhc-----cCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHH
Q 041923 208 KNHLVGV----ESKVGEIESLLA-----AAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLAR 277 (529)
Q Consensus 208 ~~~fvGR----~~~l~~l~~~L~-----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~ 277 (529)
-+.|++. ...++.+.+++. ....++|+|++|+|||||++.++..+..... ..+++. ...
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-----------~~~ 77 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-----------TKD 77 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-----------HHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-----------HHH
Confidence 3456653 344444444443 5789999999999999999999998753222 233332 223
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC----HHH---HHHHHhccCCCCCCcEEEEEeCc
Q 041923 278 LQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC----FRQ---IKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 278 l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~----~~~---l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
+...+.......... .+.+.+. ++-+||||+++. ... +..++.... ..|..+|+||..
T Consensus 78 ~~~~~~~~~~~~~~~-----~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~--~~~~~ii~tsn~ 142 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDT-----KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRY--NNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHHTCCS-----HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHH--HTTCEEEEECCC
T ss_pred HHHHHHHHhcCchHH-----HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH--HcCCCEEEEcCC
Confidence 333333222221111 2222222 456899999962 222 222222211 256788888874
No 49
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.21 E-value=7.9e-06 Score=83.98 Aligned_cols=164 Identities=17% Similarity=0.232 Sum_probs=91.0
Q ss_pred CCcccccchhH---HhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHH
Q 041923 208 KNHLVGVESKV---GEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 208 ~~~fvGR~~~l---~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
...++|.+..+ ..|...+. ..+.+.|+|++|+||||||+.+++.....|. ..+.. ..+...+.. +
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~----~l~a~-----~~~~~~ir~-~ 94 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVE----RISAV-----TSGVKEIRE-A 94 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE----EEETT-----TCCHHHHHH-H
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE----EEEec-----cCCHHHHHH-H
Confidence 46799999888 77777777 4567999999999999999999988654322 11111 122222221 1
Q ss_pred HHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCH--HHHHHHHhccCCCCCCcEEEE-EeCcchh--hhhcCCCccce
Q 041923 283 LSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCF--RQIKFLIRSLDWFMPESRIII-TTRDQKV--LKNGGVKEKDI 357 (529)
Q Consensus 283 l~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~--~~l~~l~~~~~~~~~gs~Ili-TtR~~~~--~~~~~~~~~~~ 357 (529)
+... ......+++.+|+||+++.. .+.+.|+..+.. ....+|. ||.+... .... ......
T Consensus 95 ~~~a------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL-~sR~~v 159 (447)
T 3pvs_A 95 IERA------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL-LSRARV 159 (447)
T ss_dssp HHHH------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH-HTTEEE
T ss_pred HHHH------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH-hCceeE
Confidence 1111 01112457889999999743 334444444431 2234443 5554321 1111 111256
Q ss_pred EeccCCCc-----------CC----C--CCcccHHHHHHHHHHHhCCChHHHHHHH
Q 041923 358 YEMKALEC-----------EN----L--PNEVGYQELSEKIINYAQGVPLALEILG 396 (529)
Q Consensus 358 ~~l~~L~~-----------~~----~--~~~~~~~~~~~~i~~~~~G~PLal~~~a 396 (529)
+.+.+++. .. . ....-..+..+.|++.++|++..+..+.
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 77887776 11 0 1112234566778888888887655443
No 50
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.17 E-value=5.5e-06 Score=81.60 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=72.7
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
.+.++|.+..++.|.+++. ...++.++|++|+|||++|+.+++.+.. .++..+.. ..+...+ +..+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~----~~~~i~~~-----~~~~~~i-~~~~~ 94 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA----DMMFVNGS-----DCKIDFV-RGPLT 94 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE----EEEEEETT-----TCCHHHH-HTHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC----CEEEEccc-----ccCHHHH-HHHHH
Confidence 4679999999999999998 3467888899999999999999987732 22222221 1222222 22222
Q ss_pred HHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCH---HHHHHHHhccCCCCCCcEEEEEeCcc
Q 041923 285 EVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCF---RQIKFLIRSLDWFMPESRIIITTRDQ 344 (529)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~---~~l~~l~~~~~~~~~gs~IliTtR~~ 344 (529)
....... ..+++.+|+||+++.. +..+.|...+.....++.+|+||...
T Consensus 95 ~~~~~~~-----------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~ 146 (324)
T 3u61_B 95 NFASAAS-----------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNI 146 (324)
T ss_dssp HHHHBCC-----------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSG
T ss_pred HHHhhcc-----------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 2111100 1246789999999854 34455554443333567788887654
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.15 E-value=1.7e-05 Score=88.64 Aligned_cols=47 Identities=19% Similarity=0.375 Sum_probs=41.6
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
.+.++||+.++..+.+.|. ..+.+.|+|.+|+|||+||+.+++.+..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4679999999999999987 4567899999999999999999998744
No 52
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.12 E-value=1.5e-05 Score=77.76 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=67.8
Q ss_pred cccccchhHHhHHHHhc-----------------cCCEEEEEecCcchHHHHHHHHHHHHhccCc---ceEEEEeccccc
Q 041923 210 HLVGVESKVGEIESLLA-----------------AAPLVGIWGMGGIGKTTIARAVFNKISRNFE---GSCFLQNVRKES 269 (529)
Q Consensus 210 ~fvGR~~~l~~l~~~L~-----------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~ 269 (529)
.++|.+...+.|.+.+. ....+.|+|++|+|||+||+.+++.+..... ..+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 58899988888886653 2346999999999999999999987654321 122222222111
Q ss_pred CCC-CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC-----------CHHHHHHHHhccCCCCCCcEE
Q 041923 270 QSP-GGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT-----------CFRQIKFLIRSLDWFMPESRI 337 (529)
Q Consensus 270 ~~~-~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~-----------~~~~l~~l~~~~~~~~~gs~I 337 (529)
... .........+ +.. . ++.+|+||+++ +.+.+..|+..+.....+..+
T Consensus 112 ~~~~g~~~~~~~~~----------------~~~-~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 112 GQYIGHTAPKTKEV----------------LKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp CSSTTCHHHHHHHH----------------HHH-H--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred hhcccccHHHHHHH----------------HHh-c--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 100 0111111111 111 1 34599999997 445556666555444456778
Q ss_pred EEEeCc
Q 041923 338 IITTRD 343 (529)
Q Consensus 338 liTtR~ 343 (529)
|+||..
T Consensus 173 i~~~~~ 178 (309)
T 3syl_A 173 ILAGYA 178 (309)
T ss_dssp EEEECH
T ss_pred EEeCCh
Confidence 888754
No 53
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.10 E-value=1.2e-05 Score=73.23 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCcccccch----hHHhHHHHhccC------CEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 208 KNHLVGVES----KVGEIESLLAAA------PLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 208 ~~~fvGR~~----~l~~l~~~L~~~------~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
.+.|++... .++.+.+++... +.+.|+|.+|+|||+||+.+++.........+++
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 456777653 334444454421 7899999999999999999999876654444444
No 54
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=2.2e-05 Score=77.83 Aligned_cols=167 Identities=14% Similarity=0.194 Sum_probs=89.3
Q ss_pred CCcccccchhHHhHHHHhccCCE--EEEEecCcchHHHHHHHHHHHHhcc-CcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAAAPL--VGIWGMGGIGKTTIARAVFNKISRN-FEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~--v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
-..++|.+..++.|...+...++ +.++|++|+||||+|+.+++.+... +...+.-.+... ..+...+. ....
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~----~~~~~~ir-~~i~ 98 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD----DRGIDVVR-NQIK 98 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS----CCSHHHHH-THHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc----cccHHHHH-HHHH
Confidence 35688999999999888874433 9999999999999999999976432 222222222211 12222222 1221
Q ss_pred HHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcch-hhhhcCCCccceEecc
Q 041923 285 EVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQK-VLKNGGVKEKDIYEMK 361 (529)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~l~ 361 (529)
....... .+.+.+-++|+|+++ ..+..+.|...+......+.+|++|.... +..... .....+.+.
T Consensus 99 ~~~~~~~----------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~-sR~~~~~~~ 167 (340)
T 1sxj_C 99 DFASTRQ----------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL-SQCTRFRFQ 167 (340)
T ss_dssp HHHHBCC----------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-TTSEEEECC
T ss_pred HHHhhcc----------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH-hhceeEecc
Confidence 1111000 012346789999996 33444555554443345667777765432 111110 011456666
Q ss_pred CCCcC-----------CCCCcccHHHHHHHHHHHhCCChHH
Q 041923 362 ALECE-----------NLPNEVGYQELSEKIINYAQGVPLA 391 (529)
Q Consensus 362 ~L~~~-----------~~~~~~~~~~~~~~i~~~~~G~PLa 391 (529)
+++.. .... .-..+..+.+++.++|.+.-
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~-~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKL-KLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTC-CBCHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 66640 0000 11134455666777777654
No 55
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.10 E-value=2.7e-05 Score=80.13 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=38.8
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
-..++|.+...+.|.+.+. ..+.+.|+|++|+|||+||+.+++..
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999988762 35789999999999999999999876
No 56
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.03 E-value=0.00012 Score=72.38 Aligned_cols=164 Identities=11% Similarity=0.067 Sum_probs=88.5
Q ss_pred chhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCc---------------------ceEEEEecccccC
Q 041923 215 ESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFE---------------------GSCFLQNVRKESQ 270 (529)
Q Consensus 215 ~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~~~~~~~ 270 (529)
+...+.|.+.+. -...+.++|++|+|||++|+.+++.+..... ...++ ...+...
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~-~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL-APEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEE-CCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-eccccCC
Confidence 344566666665 2456999999999999999999998653321 11111 1100000
Q ss_pred CCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcch-hh
Q 041923 271 SPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQK-VL 347 (529)
Q Consensus 271 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~~-~~ 347 (529)
..+... .+.+...+... -..+++-++|+|+++ +.+..+.|+..+....+++.+|++|.+.. +.
T Consensus 87 -~~~i~~-ir~l~~~~~~~------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 87 -TLGVDA-VREVTEKLNEH------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLL 152 (334)
T ss_dssp -SBCHHH-HHHHHHHTTSC------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC
T ss_pred -CCCHHH-HHHHHHHHhhc------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc
Confidence 111111 11121111100 012457899999997 45566777777765556777777776643 22
Q ss_pred hhcCCCccceEeccCCCcCCCCC-----cccHHHHHHHHHHHhCCChHHHHH
Q 041923 348 KNGGVKEKDIYEMKALECENLPN-----EVGYQELSEKIINYAQGVPLALEI 394 (529)
Q Consensus 348 ~~~~~~~~~~~~l~~L~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~ 394 (529)
.... .....+++.+++...... ..-..+.+..+++.++|.|..+..
T Consensus 153 ~ti~-SRc~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 153 ATLR-SRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHHH-TTSEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHh-hcceeeeCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHH
Confidence 2211 111567787777510000 001124456778888888865543
No 57
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00013 Score=72.93 Aligned_cols=88 Identities=23% Similarity=0.336 Sum_probs=58.7
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccC-CC
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQ-SP 272 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 272 (529)
+.+.|.+...++|.+.+. .++-|.++|+||.|||.||++++++....| +......... ..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcccc
Confidence 568899999999988664 467899999999999999999999875443 2222222211 11
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC
Q 041923 273 GGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT 316 (529)
Q Consensus 273 ~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~ 316 (529)
..-....+.++.. .-...+++|+||+++
T Consensus 224 Gese~~vr~lF~~----------------Ar~~aP~IIFiDEiD 251 (405)
T 4b4t_J 224 GEGSRMVRELFVM----------------AREHAPSIIFMDEID 251 (405)
T ss_dssp THHHHHHHHHHHH----------------HHHTCSEEEEEESSS
T ss_pred chHHHHHHHHHHH----------------HHHhCCceEeeecch
Confidence 2223333333322 224578999999995
No 58
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.98 E-value=0.00022 Score=70.48 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=38.8
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
-..++|.+..++.+...+. ....++|+|++|+||||||+.++..+..
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4578999888888877765 2267999999999999999999998743
No 59
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.97 E-value=0.00011 Score=72.15 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=62.0
Q ss_pred CCccc-ccchh--HHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLV-GVESK--VGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fv-GR~~~--l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
.+.|+ |.... ...+..... ....+.|+|++|+|||+||+.+++.....-...+++ +.. .+..
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i-~~~----------~~~~ 78 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS-SAD----------DFAQ 78 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE-EHH----------HHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE-EHH----------HHHH
Confidence 45676 54433 233444433 236899999999999999999999875542222333 221 1222
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCH----HHHHHHHhccCC-CCCCcEEEEEeCc
Q 041923 281 KLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCF----RQIKFLIRSLDW-FMPESRIIITTRD 343 (529)
Q Consensus 281 ~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~----~~l~~l~~~~~~-~~~gs~IliTtR~ 343 (529)
.+...+.. .....+...+. ++.+|+||+++.. ...+.+...+.. ...+..||+||.+
T Consensus 79 ~~~~~~~~-----~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 79 AMVEHLKK-----GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHHHHHHH-----TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHc-----CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 22222221 11222333332 3679999999532 222222222111 1245678888764
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.95 E-value=0.00012 Score=80.64 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=42.0
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
.+.++||+.+++++.+.|. ....+.|+|.+|+|||+||+.+++.+..
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999987 6778899999999999999999998643
No 61
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.90 E-value=7.4e-06 Score=70.32 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=34.9
Q ss_pred CcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
-.++|++..++++.+.+. ....|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 468999999999998876 56678999999999999999987653
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.86 E-value=2.6e-05 Score=80.83 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=41.8
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
.+.+|||+.+++.+...|. ....+.|+|.+|+|||+||+.+++.+..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999996 5667899999999999999999998754
No 63
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00037 Score=70.58 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=58.0
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEeccccc-CCC
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKES-QSP 272 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~ 272 (529)
..+.|.+...++|.+.+. .++-|.++|++|+|||.||+++++..... ++..+..... ...
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~----~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA----FIRVNGSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE----EEEEEGGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----eEEEecchhhcccc
Confidence 567899999888888654 46789999999999999999999987543 2333332221 111
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC
Q 041923 273 GGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT 316 (529)
Q Consensus 273 ~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~ 316 (529)
..-...++.++.. .-...+++|++|+++
T Consensus 248 Ge~e~~ir~lF~~----------------A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 248 GEGPRMVRDVFRL----------------ARENAPSIIFIDEVD 275 (428)
T ss_dssp SHHHHHHHHHHHH----------------HHHTCSEEEEEECTH
T ss_pred chhHHHHHHHHHH----------------HHHcCCCeeechhhh
Confidence 2223333333322 224578999999993
No 64
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.84 E-value=7.6e-05 Score=72.62 Aligned_cols=46 Identities=28% Similarity=0.393 Sum_probs=38.8
Q ss_pred CCcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
-..++|.+..+++|.+++. ..+.+.|+|++|+|||+||+.+++...
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3569999998888887653 357899999999999999999998764
No 65
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00043 Score=70.24 Aligned_cols=88 Identities=22% Similarity=0.360 Sum_probs=58.5
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCC-C
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQS-P 272 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 272 (529)
..+.|.+...++|.+.+. ..+-|.++|++|.|||.||+.++++....| +.......... .
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 568899999998887653 578999999999999999999999875432 22222222111 1
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC
Q 041923 273 GGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT 316 (529)
Q Consensus 273 ~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~ 316 (529)
..-....+.++. ..-...+++|++|+++
T Consensus 285 Gesek~ir~lF~----------------~Ar~~aP~IIfiDEiD 312 (467)
T 4b4t_H 285 GEGARMVRELFE----------------MARTKKACIIFFDEID 312 (467)
T ss_dssp SHHHHHHHHHHH----------------HHHHTCSEEEEEECCT
T ss_pred CHHHHHHHHHHH----------------HHHhcCCceEeecccc
Confidence 222333333322 2224678999999995
No 66
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00061 Score=68.46 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=58.7
Q ss_pred CCcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEeccccc-CC
Q 041923 208 KNHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKES-QS 271 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~ 271 (529)
-..+.|.+...++|.+.+. ..+-|.++|++|.|||.||++++++....| +..+..+.. ..
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhcc
Confidence 3567889998888888653 468899999999999999999999875432 222222221 11
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC
Q 041923 272 PGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT 316 (529)
Q Consensus 272 ~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~ 316 (529)
...-....+.++.. .-...+++|++|+++
T Consensus 257 vGesek~ir~lF~~----------------Ar~~aP~IIfiDEiD 285 (437)
T 4b4t_I 257 LGDGPRLCRQIFKV----------------AGENAPSIVFIDEID 285 (437)
T ss_dssp SSHHHHHHHHHHHH----------------HHHTCSEEEEEEEES
T ss_pred CchHHHHHHHHHHH----------------HHhcCCcEEEEehhh
Confidence 22233333333322 224578999999985
No 67
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.82 E-value=7.5e-05 Score=70.78 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=37.6
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
-..++|.+...++|.+.+. ..+-+.|+|++|+|||+||+.+++...
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4679999988887776543 256799999999999999999998764
No 68
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00042 Score=70.26 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=58.8
Q ss_pred CCcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCC-
Q 041923 208 KNHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQS- 271 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~- 271 (529)
-..+.|-+...++|.+.+. .++-|.++|+||.|||.||++++++.... ++..+.......
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQMY 255 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCSSC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhhcc
Confidence 3678899999999887643 46889999999999999999999986543 333333222211
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC
Q 041923 272 PGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT 316 (529)
Q Consensus 272 ~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~ 316 (529)
...-....+.++.. .-...+++|++|+++
T Consensus 256 vGese~~ir~lF~~----------------A~~~aP~IifiDEiD 284 (434)
T 4b4t_M 256 IGEGAKLVRDAFAL----------------AKEKAPTIIFIDELD 284 (434)
T ss_dssp SSHHHHHHHHHHHH----------------HHHHCSEEEEEECTH
T ss_pred cchHHHHHHHHHHH----------------HHhcCCeEEeecchh
Confidence 12223333333322 223468999999994
No 69
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.72 E-value=5.2e-05 Score=73.97 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=39.7
Q ss_pred CCcccccchhHHhHHHHhcc-----------CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLAA-----------APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...++|.+..++.|...+.. ...+.|+|.+|+|||+||+.+++.....
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 34688999999998888761 2479999999999999999999976543
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.68 E-value=8.8e-05 Score=70.62 Aligned_cols=46 Identities=28% Similarity=0.278 Sum_probs=35.4
Q ss_pred CCcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+.++|.+..+.++.+.+. ....|.|+|.+|+|||+||+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3568999999998887665 567889999999999999999998654
No 71
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.67 E-value=4.7e-05 Score=65.76 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=25.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
....++|+|.+|+|||||++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999997754
No 72
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.67 E-value=0.00017 Score=74.76 Aligned_cols=44 Identities=30% Similarity=0.487 Sum_probs=38.3
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..++|.+..+++|.+++. ..+.|.|+|.+|+|||+||+.+++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 568999999999988764 34679999999999999999998875
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.61 E-value=9.6e-05 Score=81.48 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=41.7
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
.+.+|||+.+++++...|. ....+.|+|.+|+|||++|+.+++.+..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 4579999999999999996 5667999999999999999999998743
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.61 E-value=8e-05 Score=72.54 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=37.9
Q ss_pred CcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+.++|+...+.++.+.+. ....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999988876 56778999999999999999998864
No 75
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.60 E-value=0.00047 Score=70.98 Aligned_cols=46 Identities=26% Similarity=0.352 Sum_probs=37.7
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++|.+..+++|.+... ..+-|.|+|++|+|||+||+.++.+..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3568999988888777653 245799999999999999999998764
No 76
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.56 E-value=0.0014 Score=61.71 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=35.9
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+.++|.+....++.+... -.+-++|+|++|+|||||++.++....
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578898877777766543 134599999999999999999998764
No 77
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00032 Score=71.21 Aligned_cols=89 Identities=21% Similarity=0.349 Sum_probs=58.7
Q ss_pred CCcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCC-
Q 041923 208 KNHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQS- 271 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~- 271 (529)
-..+.|.+...++|.+.+. .++-|.++|++|.|||.||+++++..... ++..........
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~----~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN----FIFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehhhhcccc
Confidence 3567899999888888664 46899999999999999999999987543 233333222111
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC
Q 041923 272 PGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT 316 (529)
Q Consensus 272 ~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~ 316 (529)
...-....+.++. ..-...+++|++|+++
T Consensus 256 ~Gese~~ir~~F~----------------~A~~~~P~IifiDEiD 284 (437)
T 4b4t_L 256 IGESARIIREMFA----------------YAKEHEPCIIFMDEVD 284 (437)
T ss_dssp SSHHHHHHHHHHH----------------HHHHSCSEEEEEECCC
T ss_pred chHHHHHHHHHHH----------------HHHhcCCceeeeeccc
Confidence 1122233333322 2224678999999995
No 78
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.52 E-value=0.00014 Score=58.61 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=51.8
Q ss_pred CcccEEeccCccccccchHHHHHHHHhhCCCcEEeeCCCCCCCCCCcchHHHHhhcceEEEEeccccccchhhHHHHHHH
Q 041923 24 NKYDVFLSFSRAETRDSFTSHLRSALCQKSIETFIDDQLIRGDDISESLPDTIAASSISIIIFSERYASSGRCLNELLKI 103 (529)
Q Consensus 24 ~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~ 103 (529)
.+|.+||||..+|. ...|...|...|+.. .| +.|+.|.++||+.++....|.||..|+..+
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 46899999999982 444555554445533 33 568899999999999999999999999776
Q ss_pred HHHHHhCCCeeEeE
Q 041923 104 LECKHNYGQIVIPV 117 (529)
Q Consensus 104 ~~~~~~~~~~v~pv 117 (529)
.+ .+.+|+-|
T Consensus 64 ~~----~gkpIigV 73 (111)
T 1eiw_A 64 RK----SSKPIITV 73 (111)
T ss_dssp TT----TTCCEEEE
T ss_pred HH----cCCCEEEE
Confidence 54 34445444
No 79
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.38 E-value=0.0022 Score=66.47 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=37.3
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++|.+....++.+... -.+-+.|+|++|+|||+||+.++....
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4679999988877777643 134699999999999999999998764
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.36 E-value=0.00062 Score=65.80 Aligned_cols=28 Identities=36% Similarity=0.661 Sum_probs=24.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
.++.+.|+|++|+|||+||+.+++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999998743
No 81
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.33 E-value=0.00041 Score=71.56 Aligned_cols=48 Identities=27% Similarity=0.328 Sum_probs=39.8
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...++|.+...+.+..++. ..+.+.++|++|+|||+||+.+++.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 4679999998887766554 34689999999999999999999987544
No 82
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.31 E-value=0.00056 Score=66.43 Aligned_cols=133 Identities=8% Similarity=0.070 Sum_probs=75.4
Q ss_pred ccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHh---ccCcceEEEEecccccCCCCcHHHHHHHHHHHHh
Q 041923 213 GVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKIS---RNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVL 287 (529)
Q Consensus 213 GR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 287 (529)
|-+..++.|.+.+. ..+...++|++|+|||++|..+++... ..++....+. ..+ . ..+...+ +.+.....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~~--~-~~~id~i-r~li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PEG--E-NIGIDDI-RTIKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CSS--S-CBCHHHH-HHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CCc--C-CCCHHHH-HHHHHHHh
Confidence 34556677777776 445889999999999999999998532 1123333332 111 0 1222222 22333222
Q ss_pred cCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcc-hhhhhcCCCccceEeccCCC
Q 041923 288 RDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQ-KVLKNGGVKEKDIYEMKALE 364 (529)
Q Consensus 288 ~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~~~~~l~~L~ 364 (529)
... ..+++-++|+|+++ +....+.|+..+....+.+.+|++|.++ .+.....-. .+++.+++
T Consensus 76 ~~p------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~ 140 (305)
T 2gno_A 76 YSP------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNV 140 (305)
T ss_dssp SCC------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SEEEECCC
T ss_pred hcc------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eEeCCCCC
Confidence 111 12456789999997 4556677777766556777877777553 333322111 66676665
Q ss_pred c
Q 041923 365 C 365 (529)
Q Consensus 365 ~ 365 (529)
.
T Consensus 141 ~ 141 (305)
T 2gno_A 141 P 141 (305)
T ss_dssp C
T ss_pred H
Confidence 4
No 83
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.21 E-value=0.00056 Score=74.63 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=57.8
Q ss_pred CCcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEeccccc-CC
Q 041923 208 KNHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKES-QS 271 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~ 271 (529)
-+.+.|.+..+++|.+.+. .++-|.++|++|+|||+||+.++++... .++..+..+.. ..
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~----~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC----EEEEEEHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC----eEEEEEhHHhhccc
Confidence 3567899999998888753 4678999999999999999999976543 33333322211 11
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC
Q 041923 272 PGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT 316 (529)
Q Consensus 272 ~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~ 316 (529)
...-...++.+ +.......+++|+||+++
T Consensus 279 ~gese~~lr~l----------------F~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 279 AGESESNLRKA----------------FEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp TTHHHHHHHHH----------------HHHHTTSCSEEEEEESGG
T ss_pred chHHHHHHHHH----------------HHHHHHcCCeEEEEehhc
Confidence 11122222222 223345679999999995
No 84
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.13 E-value=0.00087 Score=73.83 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=38.2
Q ss_pred CcccccchhHHhHHHHhc----c-----C--CEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 209 NHLVGVESKVGEIESLLA----A-----A--PLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~-----~--~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
..++|.+..++.+...+. + . ..+.++|++|+|||+||+.+++....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~ 547 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG 547 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 568999999988888776 1 1 16999999999999999999998744
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.08 E-value=0.0017 Score=71.72 Aligned_cols=46 Identities=28% Similarity=0.447 Sum_probs=39.4
Q ss_pred CCcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
-..++|.+..+++|.+++. ....|.|+|.+|+||||||+.++....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3679999999999988764 356899999999999999999988654
No 86
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.05 E-value=0.0016 Score=62.10 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=34.2
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+.|.+...++|.+.+. -.+-++|+|++|+|||||++.++....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 567788887777776532 234499999999999999999998754
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.01 E-value=0.0019 Score=62.85 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=37.1
Q ss_pred Ccccccc----hhHHhHHHHhcc-----CCEEEEEecCcchHHHHHHHHHHHHh-ccCcceEEE
Q 041923 209 NHLVGVE----SKVGEIESLLAA-----APLVGIWGMGGIGKTTIARAVFNKIS-RNFEGSCFL 262 (529)
Q Consensus 209 ~~fvGR~----~~l~~l~~~L~~-----~~~v~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~ 262 (529)
+.|++.. ..+..+.+++.. ...+.|+|.+|+|||+||..+++... .....++++
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 4566533 334444455542 68999999999999999999999876 543334444
No 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.00 E-value=0.0019 Score=61.73 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=36.5
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+.++|.+....++.+... -.+-++|+|++|+|||||++.++....
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 4678999888777776543 134599999999999999999998764
No 89
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.95 E-value=0.0021 Score=58.85 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=22.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|.+|+|||||+..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999998
No 90
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.91 E-value=0.0088 Score=53.46 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=63.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhc--CCC--CCC--------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLR--DEN--VIP-------- 294 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~--~~~--~~~-------- 294 (529)
....|.|++-.|.||||+|...+-+...+-..+.++...... . ..+...++..+.-.+.. ... ...
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~-~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-W-PNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-S-CCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-C-CccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 345677777778999999999999876665555565433321 1 33444444444100000 000 000
Q ss_pred ---CHHHHHHHhCCCc-EEEEEcCCC--------CHHHHHHHHhccCCCCCCcEEEEEeCcc
Q 041923 295 ---DIEFNFTRLSRRK-ALIVLDDVT--------CFRQIKFLIRSLDWFMPESRIIITTRDQ 344 (529)
Q Consensus 295 ---~~~~l~~~l~~~~-~LLVlDdv~--------~~~~l~~l~~~~~~~~~gs~IliTtR~~ 344 (529)
....+++.+.+.+ =|||||++. +.+.+-.++... .....||+|+|+.
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCC
Confidence 0344555555444 599999982 334443333332 3677899999984
No 91
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.89 E-value=0.00089 Score=59.83 Aligned_cols=108 Identities=14% Similarity=-0.000 Sum_probs=54.6
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
..++.|+|..|+||||++.+.+++....-..++++....+...... .+...+. .............+.+.+.++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~---~i~s~~g--~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHST---MIVSHSG--NGVEAHVIERPEEMRKYIEEDT 77 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCC---EECC------CEECEEESSGGGGGGGCCTTE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcc---cEEecCC--CceeeEEECCHHHHHHHhcCCC
Confidence 4688999999999999998888876543222333322111000000 0000000 0000001112333444444456
Q ss_pred EEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 308 ALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 308 ~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
-+|++|.+.. .+.++.+..... .+..|++|.++
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~ 112 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLD---RGIDVFCAGLD 112 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEEES
T ss_pred CEEEEECcccCCHHHHHHHHHHHH---CCCCEEEEeec
Confidence 7999999853 344444443332 37789988774
No 92
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.85 E-value=0.0019 Score=64.07 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=65.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE-ecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ-NVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSR 305 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 305 (529)
...+++|.|+.|+|||||.+.+...+.......++.. +..+... ... . ....+.........-...+...|..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~-~~~-~----~~v~q~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH-ESK-K----CLVNQREVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-CCS-S----SEEEEEEBTTTBSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh-hcc-c----cceeeeeeccccCCHHHHHHHHhhh
Confidence 5569999999999999999999887655433333322 1111100 000 0 0000000000011115578888899
Q ss_pred CcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcchh
Q 041923 306 RKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQKV 346 (529)
Q Consensus 306 ~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~~ 346 (529)
.+=+|++|...+.+.++.+..... .|..||+|+.....
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~~---~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAAE---TGHLVFGTLHTTSA 233 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHH---TTCEEEEEESCSSH
T ss_pred CcCEEecCCCCCHHHHHHHHHHHh---cCCEEEEEEccChH
Confidence 999999999998887776555432 46668888876443
No 93
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.77 E-value=0.00087 Score=65.89 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=41.0
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...++|++..++.+...+.....+.|+|.+|+|||+||+.+++.+..
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred ccceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45799999999988888876678999999999999999999987643
No 94
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.72 E-value=0.0021 Score=71.62 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=38.0
Q ss_pred CcccccchhHHhHHHHhc----c-------CCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 209 NHLVGVESKVGEIESLLA----A-------APLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~-------~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
..++|.+..++.+...+. + ...+.|+|.+|+|||+||+.+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357999999988888775 1 147999999999999999999997744
No 95
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.67 E-value=0.0031 Score=66.40 Aligned_cols=47 Identities=28% Similarity=0.487 Sum_probs=37.1
Q ss_pred CcccccchhHHhHHHHhc--------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 209 NHLVGVESKVGEIESLLA--------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~--------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...+|.+...+.+.+.+. ....++|+|++|+||||||+.++......
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 457888877777765443 46789999999999999999999887443
No 96
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.66 E-value=0.0012 Score=63.91 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=38.7
Q ss_pred CCcccccchhHHhHHHHhc----------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA----------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++|++..++.|...+. ....+.|+|.+|+|||+||+.+++.+.
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568999999988887664 256799999999999999999998773
No 97
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.63 E-value=0.0011 Score=63.01 Aligned_cols=48 Identities=25% Similarity=0.264 Sum_probs=39.4
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.+++.....
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4679999999888888664 14568899999999999999999986543
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.59 E-value=0.0029 Score=61.10 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..+++.|+|++|+|||+||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5667899999999999999999987
No 99
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.54 E-value=0.008 Score=66.12 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=37.4
Q ss_pred CCcccccchhHHhHHHHhc----c-------CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA----A-------APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----~-------~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...++|.+..++.+...+. + ...+.++|++|+|||+||+.+++.+
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3568899999988888775 1 1269999999999999999999877
No 100
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.51 E-value=0.003 Score=59.81 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=63.3
Q ss_pred hccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhC
Q 041923 225 LAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLS 304 (529)
Q Consensus 225 L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~ 304 (529)
+....+++|+|+.|+|||||++.++..+...+...+++....-... ...... +..+..-......-...+...+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~-~~~~~~----~v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-FKHKKS----IVNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-CCCSSS----EEEEEEBTTTBSCHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee-cCCcce----eeeHHHhCCCHHHHHHHHHHHHh
Confidence 3477899999999999999999998866544344554432110000 000000 00000000000111345566666
Q ss_pred CCcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcch
Q 041923 305 RRKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQK 345 (529)
Q Consensus 305 ~~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~ 345 (529)
..+=+|++|...|.+....++... ..|..|++||.+..
T Consensus 97 ~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 97 EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred hCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 677789999998777665554432 24667888887644
No 101
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.48 E-value=0.033 Score=53.78 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=28.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...+++|+|.+|+||||++..++..+... ...+.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35689999999999999999999887654 3344443
No 102
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.41 E-value=0.0017 Score=57.38 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|.|+|++|+||||+++.+++++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998764
No 103
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.37 E-value=0.003 Score=55.59 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.5
Q ss_pred cCCEEEEEecCcchHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAV 248 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~ 248 (529)
...+++|.|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4668999999999999999963
No 104
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.36 E-value=0.036 Score=56.12 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=25.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+.+|.++|.+|+||||++..++..+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 5799999999999999999999877665
No 105
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.33 E-value=0.0029 Score=62.50 Aligned_cols=31 Identities=19% Similarity=0.092 Sum_probs=27.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFE 257 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 257 (529)
....++|+|.+|+|||||+..+++.+..+++
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~ 203 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 203 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCT
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCC
Confidence 7889999999999999999999987765543
No 106
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.31 E-value=0.0041 Score=56.26 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=31.7
Q ss_pred cchhHHhHHHHhc-----cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 214 VESKVGEIESLLA-----AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 214 R~~~l~~l~~~L~-----~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
|++.++.|.+.+. ...+|+|.|.+|+|||||++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4455666666554 4578999999999999999999887643
No 107
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.28 E-value=0.12 Score=49.57 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=25.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...+++|.|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999988764
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.28 E-value=0.0059 Score=56.13 Aligned_cols=106 Identities=12% Similarity=-0.036 Sum_probs=58.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC--CCCCHHHHHHHhC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN--VIPDIEFNFTRLS 304 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~--~~~~~~~l~~~l~ 304 (529)
...++.|+|..|+||||++..++++...+-..++++....+... . .++.+.++.... .......+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~-~-------~~i~srlG~~~~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRS-I-------RNIQSRTGTSLPSVEVESAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGG-C-------SSCCCCCCCSSCCEEESSTHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchH-H-------HHHHHhcCCCccccccCCHHHHHHHHH
Confidence 56789999999999999999999988765444444432211100 0 011111111100 1111223333332
Q ss_pred ----C-CcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 305 ----R-RKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 305 ----~-~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
+ +.-+||+|.+. +.++++.+..... .|..||+|.++
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~ 125 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLD 125 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCS
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecc
Confidence 2 34599999985 3345554433222 37789999984
No 109
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.28 E-value=0.0072 Score=61.53 Aligned_cols=54 Identities=19% Similarity=0.389 Sum_probs=36.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLL 283 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 283 (529)
....++|+|.+|+|||||+..++.....++...+.+...++. ......+...+.
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGer---ttev~el~~~l~ 203 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGER---TREGNDLYHEMK 203 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSC---HHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccC---chHHHHHHHHhh
Confidence 566799999999999999999998876655555544433332 233445554443
No 110
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.14 E-value=0.0025 Score=66.11 Aligned_cols=45 Identities=20% Similarity=0.098 Sum_probs=39.8
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...++|++..++.+...+.....|.|+|++|+|||+||+.+++..
T Consensus 21 ~~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 21 EKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HhhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 346899999999888888877899999999999999999998765
No 111
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.12 E-value=0.0032 Score=55.07 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHh
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+|+|.|++|+||||+++.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 112
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.08 E-value=0.034 Score=56.47 Aligned_cols=56 Identities=18% Similarity=0.398 Sum_probs=39.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSE 285 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 285 (529)
....++|.|.+|+|||+|+.++++.+.......+.+..+.+. ......+.+.+...
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER---~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER---TREGNDLYHEMIES 207 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCC---HHHHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCc---chHHHHHHHHhhhc
Confidence 788999999999999999999999875544344444444332 34556666666554
No 113
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.99 E-value=0.0041 Score=55.20 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.+.|.|+|++|+||||+|+.++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999876
No 114
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.98 E-value=0.0044 Score=55.91 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=24.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
....|+|.|++|+||||+++.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999876
No 115
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.95 E-value=0.0049 Score=61.34 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=36.8
Q ss_pred cccccchhHHhHHHHhc-----------------cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 210 HLVGVESKVGEIESLLA-----------------AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 210 ~fvGR~~~l~~l~~~L~-----------------~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.++|.+..++.|...+. ..+.+.|+|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 47899988888888772 34679999999999999999999876
No 116
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.92 E-value=0.048 Score=55.17 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
..+|+++|.+|+||||++..++..+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999877654
No 117
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.89 E-value=0.007 Score=53.83 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=25.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...+|+|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45689999999999999999999987643
No 118
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.87 E-value=0.032 Score=56.96 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=40.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSE 285 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 285 (529)
....++|.|.+|+|||+|+.++++.+.......+.+..+++. ......+.+.+...
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER---~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGER---TREGNDLYMEMKES 219 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCC---SHHHHHHHHHHHHT
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccC---cHHHHHHHHhhhcc
Confidence 778899999999999999999999875544444444444432 44566777776654
No 119
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.86 E-value=0.0073 Score=54.29 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 218 VGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 218 l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
+..|..++.+ ...+.|+|++|+|||++|..+++.+..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5556666653 347999999999999999999988743
No 120
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.86 E-value=0.44 Score=46.54 Aligned_cols=146 Identities=11% Similarity=-0.010 Sum_probs=84.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh-ccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS-RNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSR 305 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 305 (529)
-.++..++|..|.||++.+..+.+.+. ..|.....+ .... ..++..+...+... -+-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------------plf~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTF-SIDP----NTDWNAIFSLCQAM----------------SLFA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEE-ECCT----TCCHHHHHHHHHHH----------------HHCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEE-EecC----CCCHHHHHHHhcCc----------------CCcc
Confidence 567899999999999999999998764 334322111 1211 24455544443211 1234
Q ss_pred CcEEEEEcCCCC---HHHHHHHHhccCCCCCCcEEEEEeCc-------chhhhhcCCCccceEeccCCCcCCCCC-----
Q 041923 306 RKALIVLDDVTC---FRQIKFLIRSLDWFMPESRIIITTRD-------QKVLKNGGVKEKDIYEMKALECENLPN----- 370 (529)
Q Consensus 306 ~~~LLVlDdv~~---~~~l~~l~~~~~~~~~gs~IliTtR~-------~~~~~~~~~~~~~~~~l~~L~~~~~~~----- 370 (529)
.+-++|+|+++. .+..+.|...+....+++.+|+++.+ ..+.....- ....++..+++......
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s-r~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN-RSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT-TCEEEEECCCCTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh-CceEEEeeCCCHHHHHHHHHHH
Confidence 566888899864 35566677766655677777776643 233333211 11577777776521110
Q ss_pred -----cccHHHHHHHHHHHhCCChHHHHH
Q 041923 371 -----EVGYQELSEKIINYAQGVPLALEI 394 (529)
Q Consensus 371 -----~~~~~~~~~~i~~~~~G~PLal~~ 394 (529)
-.-..+.+..+++.++|....+..
T Consensus 155 ~~~~g~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNLELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTCEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHhchHHHHHHH
Confidence 011235566677777777776654
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.83 E-value=0.016 Score=57.70 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=63.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
...+++|+|..|+|||||+..++..+.......+.+....-........ . +..+.........-...+...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~-~----~v~Q~~~g~~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK-S----IVNQREVGEDTKSFADALRAALRED 209 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS-S----EEEEEEBTTTBSCSHHHHHHHTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc-e----EEEeeecCCCHHHHHHHHHHHhhhC
Confidence 6779999999999999999999987654433444332110000000000 0 0000000001112255677778778
Q ss_pred cEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcch
Q 041923 307 KALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQK 345 (529)
Q Consensus 307 ~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~ 345 (529)
+=+|++|.+.+.+.+...+... ..|..|+.|+....
T Consensus 210 pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 210 PDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp CSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred cCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 8899999998877766555443 24556777776543
No 122
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.82 E-value=0.0037 Score=55.73 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=23.7
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
|.|+|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 6789999999999999999987754444
No 123
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.79 E-value=0.0046 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.8
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 44
No 124
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.79 E-value=0.0048 Score=54.53 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.+.|.|+|++|+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999999876
No 125
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.77 E-value=0.0039 Score=60.02 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=23.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
++.|+|.+|+|||||+.+++......
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~ 55 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ 55 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 78999999999999999999887665
No 126
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.77 E-value=0.054 Score=52.59 Aligned_cols=61 Identities=16% Similarity=0.094 Sum_probs=40.0
Q ss_pred HHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHH
Q 041923 218 VGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSE 285 (529)
Q Consensus 218 l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 285 (529)
++.+..-|....++.|.|.+|+||||||.+++.....+-..++|+. . ......+...++..
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s-l------E~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS-L------EMGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE-S------SSCHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE-C------CCCHHHHHHHHHHH
Confidence 3434333347889999999999999999999987655434455553 2 23445555555443
No 127
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.75 E-value=0.0089 Score=53.19 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.3
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
..|+|.|++|+||||+++.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999998764
No 128
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.71 E-value=0.0081 Score=53.71 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+|+|.|++|+||||+++.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999875
No 129
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.68 E-value=0.0069 Score=53.88 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=23.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...|+|.|++|+||||+++.++.++..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999999987753
No 130
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.67 E-value=0.0053 Score=54.07 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.5
Q ss_pred CEEEEEecCcchHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 131
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.66 E-value=0.011 Score=53.62 Aligned_cols=86 Identities=19% Similarity=0.298 Sum_probs=46.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhccCcceEEEEe---cccccCCCCcHHHHHHHHHHHHhcCCCCCCC---HHHHHHHh
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQN---VRKESQSPGGLARLQQKLLSEVLRDENVIPD---IEFNFTRL 303 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---~~~l~~~l 303 (529)
+|.|.|+||+||||.|+.+++++. ...+.. +++.......+....+ .........++ ...+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~----~~~~~G~lvpd~iv~~lv~~~l 72 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAK----EYMERGELVPDDLIIALIEEVF 72 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHH----HHHHHTCCCCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHH----HHHhcCCcCCHHHHHHHHHHhh
Confidence 578999999999999999998652 222220 0000000111111111 11222222333 56677777
Q ss_pred CCCcEEEEEcCCC-CHHHHHHHH
Q 041923 304 SRRKALIVLDDVT-CFRQIKFLI 325 (529)
Q Consensus 304 ~~~~~LLVlDdv~-~~~~l~~l~ 325 (529)
..... +|||.+- +..|.+.|.
T Consensus 73 ~~~~~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 73 PKHGN-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp CSSSC-EEEESCCCSHHHHHHHH
T ss_pred ccCCc-eEecCCchhHHHHHHHH
Confidence 76554 6889994 556655553
No 132
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.66 E-value=0.0063 Score=54.27 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+|.|.|++|+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999876
No 133
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.65 E-value=0.0055 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|+|+|++|+|||||++.++..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988753
No 134
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.64 E-value=0.044 Score=47.50 Aligned_cols=95 Identities=19% Similarity=0.151 Sum_probs=63.6
Q ss_pred cchHHHHHHHHhhCCCcEEeeC-CCC----CCC----CCCcchHHHHhhcceEEEEeccccccchhhHHHHHHHHHHHHh
Q 041923 39 DSFTSHLRSALCQKSIETFIDD-QLI----RGD----DISESLPDTIAASSISIIIFSERYASSGRCLNELLKILECKHN 109 (529)
Q Consensus 39 ~~~~~~l~~~L~~~g~~~~~d~-~~~----~g~----~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~~~~~~ 109 (529)
....+.|...-....+..|.|- +.. .+. .|...+.+.|..|+.+|+++|++...|.|..+|++.++. .
T Consensus 31 i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~ 107 (189)
T 3hyn_A 31 FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---T 107 (189)
T ss_dssp HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---T
T ss_pred HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---h
Confidence 4457777777777677677775 442 222 356677889999999999999999999999999988872 2
Q ss_pred CCCeeEeEEeeec-CcchhhcccchhHH
Q 041923 110 YGQIVIPVFYRVD-PLHVRKQIGIFGDS 136 (529)
Q Consensus 110 ~~~~v~pvf~~v~-p~~vr~~~~~~~~~ 136 (529)
.+.+||-|..+-+ .+++....|+|...
T Consensus 108 ~~~PII~Vy~~~~~~~~i~~~~g~~~~~ 135 (189)
T 3hyn_A 108 KGLPVIVIYPDYDKKSDIVDSNGNFKKQ 135 (189)
T ss_dssp TCCCEEEEETTCCSGGGTBCTTSCBCHH
T ss_pred cCCcEEEEECCccccchhhhccccchhh
Confidence 3345666554322 22444444554433
No 135
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.62 E-value=0.0071 Score=52.75 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...|+|.|++|+||||+++.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 136
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.62 E-value=0.011 Score=53.58 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
...+|+|.|++|+||||+++.+++.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 356899999999999999999999876543
No 137
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.62 E-value=0.0061 Score=55.05 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=22.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+|+|.|++|+||||||+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 138
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.62 E-value=0.0063 Score=53.90 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=23.2
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.++++|.|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56899999999999999999988654
No 139
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.61 E-value=0.01 Score=53.45 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=25.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...+|+|.|++|+|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999998875
No 140
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.58 E-value=0.0043 Score=61.20 Aligned_cols=31 Identities=29% Similarity=0.210 Sum_probs=26.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFE 257 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 257 (529)
....++|.|.+|+|||+|+.++++.+..+++
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~ 204 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAENHP 204 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHHHCT
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhhcCC
Confidence 7889999999999999999999998765443
No 141
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.58 E-value=0.0065 Score=53.86 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHh
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
++|+|.|++|+||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5699999999999999999998753
No 142
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.54 E-value=0.0065 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.2
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHh
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
+.|+|.|++|+||||+|+.++.++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998763
No 143
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.53 E-value=0.021 Score=51.75 Aligned_cols=109 Identities=11% Similarity=0.020 Sum_probs=57.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
...+..++|.-|.||||.+...+++...+-..++++...... ..+...+...+.... ..........+.+.+.++
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~---R~ge~~i~s~~g~~~--~a~~~~~~~~~~~~~~~~ 101 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDN---RYSEEDVVSHNGLKV--KAVPVSASKDIFKHITEE 101 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--------------------C--CEEECSSGGGGGGGCCSS
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCC---cchHHHHHhhcCCee--EEeecCCHHHHHHHHhcC
Confidence 456889999999999999999999876655545555422111 112222222221111 000122223333444433
Q ss_pred cEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 307 KALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 307 ~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
--+|++|.+. +.++++.+....+ .|..||+|.++
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLD 137 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECS
T ss_pred CCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecc
Confidence 3499999984 3455544433222 47789999995
No 144
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.52 E-value=0.023 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.208 Sum_probs=19.9
Q ss_pred CEEEEEecCcchHHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
-++.|+|.+|.|||++|.......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367899999999999998876543
No 145
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.52 E-value=0.015 Score=54.07 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=29.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 6789999999999999999999887654433455543
No 146
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.51 E-value=0.0063 Score=59.98 Aligned_cols=46 Identities=24% Similarity=0.210 Sum_probs=35.0
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++|.+...+.+...+. ....+.|+|.+|+|||+||+.+++...
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3569999886555444332 345599999999999999999998764
No 147
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.48 E-value=0.094 Score=53.82 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=27.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
+.+.+.|.|.+|+|||+++..++..+.......+.+
T Consensus 44 ~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~ 79 (459)
T 3upu_A 44 KKHHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79 (459)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 345999999999999999999998876554433333
No 148
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.47 E-value=0.0092 Score=53.80 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=23.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998876
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.46 E-value=0.0068 Score=54.02 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999864
No 150
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.45 E-value=0.0071 Score=54.75 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=24.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..++|+|.|++|+|||||++.+...+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 567899999999999999999988763
No 151
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.44 E-value=0.0058 Score=54.02 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=18.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999987653
No 152
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.43 E-value=0.0096 Score=53.36 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=24.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...+|+|.|++|+||||+|+.++.++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998763
No 153
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.43 E-value=0.016 Score=52.55 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=25.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...+|+|.|++|+||||+++.+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999887544
No 154
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.42 E-value=0.0097 Score=54.03 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...+|+|.|.+|+|||||++.++..+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5679999999999999999999887653
No 155
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.41 E-value=0.011 Score=59.01 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=36.3
Q ss_pred CcccccchhHHhHHHHhc--------------------------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 209 NHLVGVESKVGEIESLLA--------------------------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~--------------------------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..++|.+...+.|...+. ....+.|+|++|+|||+||+.+++.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 457888888887777661 245799999999999999999998763
No 156
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.41 E-value=0.0093 Score=53.11 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=25.5
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEG 258 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~ 258 (529)
.++++|.|+.|+|||||++.+...+...|..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 3679999999999999999999876544443
No 157
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.39 E-value=0.014 Score=52.82 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
...|+|.|++|+||||+++.++..+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 35799999999999999999999876543
No 158
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.39 E-value=0.0084 Score=53.46 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.37 E-value=0.01 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=22.0
Q ss_pred CCEEEEEecCcchHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...|+|+|++|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999876
No 160
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.37 E-value=0.013 Score=64.03 Aligned_cols=46 Identities=28% Similarity=0.414 Sum_probs=36.2
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
....|.+...++|.+.+. ..+-+.++|++|.|||.||+.++++...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 456777777777776653 3467899999999999999999987643
No 161
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.35 E-value=0.0082 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHh
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998763
No 162
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.34 E-value=0.043 Score=53.67 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=60.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
....++|.|..|.|||||++.++..+.. ....+.+.+..+... .. ... . . .+... ........+...|..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~-~~-~~~---~-i-~~~~g-gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVF-KH-HKN---Y-T-QLFFG-GNITSADCLKSCLRMR 240 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCC-SS-CSS---E-E-EEECB-TTBCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccc-cc-chh---E-E-EEEeC-CChhHHHHHHHHhhhC
Confidence 7789999999999999999998875433 234555543322111 00 000 0 0 00000 1222356677788888
Q ss_pred cEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 307 KALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 307 ~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
+=+|++|.+.+.+.++.+. .+. ..+..+|+||..
T Consensus 241 p~ilildE~~~~e~~~~l~-~~~--~g~~tvi~t~H~ 274 (330)
T 2pt7_A 241 PDRIILGELRSSEAYDFYN-VLC--SGHKGTLTTLHA 274 (330)
T ss_dssp CSEEEECCCCSTHHHHHHH-HHH--TTCCCEEEEEEC
T ss_pred CCEEEEcCCChHHHHHHHH-HHh--cCCCEEEEEEcc
Confidence 8899999998765555443 322 112235666654
No 163
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.33 E-value=0.017 Score=53.77 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=27.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC-cceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF-EGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~ 262 (529)
...++.|.|.+|+|||+||.+++.....+. ..++++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 678999999999999999999887643332 334444
No 164
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.32 E-value=0.0092 Score=53.68 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=22.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHHh
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 165
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.32 E-value=0.012 Score=54.91 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=27.9
Q ss_pred hhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 216 SKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 216 ~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+.++...+. ....|+|.|++|+||||+|+.+++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444433 55689999999999999999998765
No 166
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.31 E-value=0.063 Score=54.87 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=38.1
Q ss_pred hccCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHH
Q 041923 225 LAAAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEV 286 (529)
Q Consensus 225 L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 286 (529)
|....++.|.|.+|+|||+||.+++........ .++|+. . ......+...++...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-l------E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-L------EMPAAQLTLRMMCSE 252 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-S------SSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-C------CCCHHHHHHHHHHHH
Confidence 337789999999999999999999998765333 344443 2 234556666665443
No 167
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.27 E-value=0.077 Score=53.85 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=29.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEec
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNV 265 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~ 265 (529)
.++|.|+|.+|+||||++..++..+.......+.+.+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 56899999999999999999999887652334444333
No 168
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.24 E-value=0.01 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+++|.|++|+|||||++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998765
No 169
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.21 E-value=0.013 Score=52.84 Aligned_cols=25 Identities=32% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...|+|.|++|+||||+|+.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 170
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.21 E-value=0.02 Score=52.25 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=31.9
Q ss_pred chhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 215 ESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 215 ~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+.....+.+.+. ..+.|+|.|.+|+|||||+..++......
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344555555554 67899999999999999999999876544
No 171
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.19 E-value=0.022 Score=49.75 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=26.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc-CcceE
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN-FEGSC 260 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~ 260 (529)
.++++|.|..|+|||||+..++..+..+ +...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ 37 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 37 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeE
Confidence 4689999999999999999999987654 34333
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.18 E-value=0.012 Score=53.53 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...+++|.|++|+|||||++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999987654
No 173
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.17 E-value=0.011 Score=55.67 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.2
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHh
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+++|.|++|+||||||+.++.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998753
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.15 E-value=0.065 Score=52.40 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=39.1
Q ss_pred HHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 218 VGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 218 l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
++.+..-|....++.|.|.+|+||||||..++......-..++|+. . ......+...++.
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-l------Ems~~ql~~Rlls 95 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-L------EMSAEQLALRALS 95 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-S------SSCHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-C------CCCHHHHHHHHHH
Confidence 3333333347889999999999999999999987665323344443 2 3344555555544
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.14 E-value=0.012 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.9
Q ss_pred CEEEEEecCcchHHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..|+|.|++|+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998865
No 176
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.13 E-value=0.012 Score=57.72 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=24.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
...++|.|++|+||||+++.++..+...|
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34599999999999999999998765544
No 177
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.12 E-value=0.012 Score=52.93 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=24.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 577999999999999999999987654
No 178
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.11 E-value=0.012 Score=51.06 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHHh
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.|+|.|++|+||||+|+.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 179
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.10 E-value=0.023 Score=52.09 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=27.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
...+++|.|.+|+|||||+..++......-..++|+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 678999999999999999999997665433334444
No 180
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.09 E-value=0.14 Score=53.27 Aligned_cols=54 Identities=7% Similarity=0.050 Sum_probs=38.2
Q ss_pred ccCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHH
Q 041923 226 AAAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEV 286 (529)
Q Consensus 226 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 286 (529)
....++.|.|.+|+|||+||.+++........ .++|+. . ......+...++...
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s-~------E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM-L------EESVEETAEDLIGLH 294 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE-S------SSCHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe-c------cCCHHHHHHHHHHHH
Confidence 37889999999999999999999998776533 344443 2 234556666655443
No 181
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.08 E-value=0.027 Score=51.51 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=29.6
Q ss_pred hHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 217 KVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 217 ~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
..+.+...+. ....|+|.|.+|+|||||+..++......
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444455444 56789999999999999999999875444
No 182
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.05 E-value=0.013 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.0
Q ss_pred CEEEEEecCcchHHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.+|+|.|++|+||||+|+.++..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998875
No 183
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.05 E-value=0.013 Score=52.70 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|+.|+|||||++.++...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998764
No 184
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.05 E-value=0.014 Score=56.02 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+|.|.|++|+||||||+.++.++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 185
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.02 E-value=0.014 Score=52.65 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|++|+|||||++.+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998765
No 186
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.01 E-value=0.096 Score=55.28 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=56.2
Q ss_pred ccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHH---
Q 041923 226 AAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTR--- 302 (529)
Q Consensus 226 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~--- 302 (529)
...+++.|+|.+|.||||++..++..+...-..+.+.. .. . .....+....... ...+..+...
T Consensus 202 ~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A-pT------~---~Aa~~L~e~~~~~---a~Tih~ll~~~~~ 268 (574)
T 3e1s_A 202 AGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA-PT------G---KAARRLGEVTGRT---ASTVHRLLGYGPQ 268 (574)
T ss_dssp TTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE-SS------H---HHHHHHHHHHTSC---EEEHHHHTTEETT
T ss_pred HhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec-Cc------H---HHHHHhHhhhccc---HHHHHHHHcCCcc
Confidence 36789999999999999999999987665433333322 11 1 1112222111110 0001111100
Q ss_pred -hC------CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 303 -LS------RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 303 -l~------~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
+. .+.-+||+|.+. +...+..+...++ .+.++|+.--.
T Consensus 269 ~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~ 315 (574)
T 3e1s_A 269 GFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDT 315 (574)
T ss_dssp EESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECT
T ss_pred hhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecc
Confidence 00 023489999995 5667777776654 66777776543
No 187
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.01 E-value=0.014 Score=51.89 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=22.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
+|+|.|++|+||||+++.+++++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 188
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.01 E-value=0.014 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998763
No 189
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.98 E-value=0.012 Score=53.05 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+|+|.|++|+||||+++.+++.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998764
No 190
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.95 E-value=0.018 Score=61.45 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=41.6
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...++|.+..++.+...+.....+.|+|++|+||||||+.++..+...
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 367899999998888888877899999999999999999999865443
No 191
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.93 E-value=0.016 Score=53.21 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+|+|.|++|+||||+++.++..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 192
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.91 E-value=0.011 Score=52.87 Aligned_cols=107 Identities=11% Similarity=0.030 Sum_probs=57.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhc--CCCCCCCHHHHHHHhCC
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLR--DENVIPDIEFNFTRLSR 305 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~--~~~~~~~~~~l~~~l~~ 305 (529)
..+..++|..|.||||.+...+++...+-..+.++...... ..+.. .+.+.++. ..........+.+.+.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~---r~~~~----~i~s~~g~~~~a~~~~~~~~i~~~~~~ 80 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN---RYSKE----DVVSHMGEKEQAVAIKNSREILKYFEE 80 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC----------C----EEECTTSCEEECEEESSSTHHHHHCCT
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc---cchHH----HHHhhcCCceeeEeeCCHHHHHHHHhc
Confidence 46899999999999999999999875543334444211110 00000 11111110 00011112344445444
Q ss_pred CcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcc
Q 041923 306 RKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQ 344 (529)
Q Consensus 306 ~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~ 344 (529)
.-=+|++|.+. +.++++.+....+ .|..||+|.++.
T Consensus 81 ~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp TCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 33489999874 3455555444322 477899998854
No 193
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.90 E-value=0.015 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
....|+|.|++|+||||+++.++..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998765
No 194
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.90 E-value=0.013 Score=55.18 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998754
No 195
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.87 E-value=0.015 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.1
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
.+|+|.|..|+||||+++.+...+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999988754
No 196
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.85 E-value=0.68 Score=45.78 Aligned_cols=44 Identities=32% Similarity=0.401 Sum_probs=35.7
Q ss_pred CcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..++|....+.++...+. ....|.|+|.+|.||+++|+.+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 468898888888877765 55668899999999999999887644
No 197
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.83 E-value=0.018 Score=53.73 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=24.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...+++|.|++|+|||||++.+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999997763
No 198
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.82 E-value=0.016 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 199
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.82 E-value=0.016 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.3
Q ss_pred CEEEEEecCcchHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
..|+|.|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.80 E-value=0.015 Score=53.26 Aligned_cols=26 Identities=27% Similarity=0.149 Sum_probs=23.0
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...|.|.|++|+||||+++.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998764
No 201
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.76 E-value=0.024 Score=57.54 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=37.0
Q ss_pred CCcccccchhHHhHHHHhc----------------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA----------------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...++|.+...+.|...+. ..+.+.++|++|+|||++|+.++..+..
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3567888887777766552 2467999999999999999999987643
No 202
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.76 E-value=0.038 Score=51.06 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|.+|+|||||+..++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 67899999999999999999999864
No 203
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.74 E-value=0.019 Score=53.96 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...+|.|.|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999988753
No 204
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.72 E-value=0.018 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
.|+|.|..|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988754
No 205
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.68 E-value=0.025 Score=54.24 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...+|+|.|.+|+||||||+.+...+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4568999999999999999999887654
No 206
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.68 E-value=0.018 Score=52.61 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..++|.|.|+||+||||.|+.+++++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999865
No 207
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.64 E-value=0.02 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...|+|.|+.|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998766
No 208
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.63 E-value=0.018 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.2
Q ss_pred CEEEEEecCcchHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 209
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.62 E-value=0.02 Score=51.82 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|+|.|..|+|||||++.++..+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988654
No 210
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.60 E-value=0.017 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 211
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.56 E-value=0.02 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+|+|+|+.|+||||+++.+...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998763
No 212
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.54 E-value=0.023 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHHh
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.++|.|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 213
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.52 E-value=0.035 Score=54.72 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=29.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...++.|+|.+|+||||||.+++......-..++|+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 6889999999999999999999987665434455554
No 214
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.51 E-value=0.02 Score=51.55 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+.++|.|+.|+|||||++.+...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 56899999999999999999987653
No 215
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.51 E-value=0.11 Score=51.55 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=30.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...++.|+|.+|+|||+||.+++......-..++|+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 6789999999999999999999987765444555654
No 216
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.49 E-value=0.024 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=24.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...|+|.|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 88999999999999999999998764
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.48 E-value=0.035 Score=54.83 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=30.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
..+++.|.|.+|+||||||.+++......-..++|+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7889999999999999999999987765544555654
No 218
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.48 E-value=0.02 Score=51.42 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+|+|.|+.|+||||+++.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999999874
No 219
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.47 E-value=0.019 Score=51.92 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+|+|.|.+|+|||||++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998764
No 220
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.45 E-value=0.023 Score=50.08 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.5
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...|+|.|+.|+||||+++.++..+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 457899999999999999999987643
No 221
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.42 E-value=0.1 Score=53.36 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=32.5
Q ss_pred HHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEE
Q 041923 218 VGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFL 262 (529)
Q Consensus 218 l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~ 262 (529)
++.+..-+....++.|.|.+|+|||||+.+++........ .++|+
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 3444333337889999999999999999999998765333 34444
No 222
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.42 E-value=0.02 Score=53.62 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=23.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...+|+|.|.+|+||||+|+.++..+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3458999999999999999999887543
No 223
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.40 E-value=0.027 Score=51.39 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...|+|.|++|+||||+|+.++.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.40 E-value=0.023 Score=51.62 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=24.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...+|+|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999998765
No 225
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.40 E-value=0.037 Score=51.38 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=23.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|++|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 7889999999999999999999853
No 226
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.39 E-value=0.034 Score=53.94 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=29.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
+.++|+|+|=|||||||.+..++.-+...-..+..+
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 789999999999999999999998876654333333
No 227
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.38 E-value=0.034 Score=54.78 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 5789999999999999999999987765434455654
No 228
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.38 E-value=0.029 Score=54.50 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=31.7
Q ss_pred ccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 211 LVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
++|-...+..+...+. ...+|+|.|..|+|||||++.+...+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4455555555555444 2338999999999999999998876653
No 229
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.38 E-value=0.039 Score=50.40 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=23.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.|.+.|.||+||||+|..++..+..+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 48899999999999999999987655
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.37 E-value=0.054 Score=55.49 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=28.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...+++|.|.+|+|||||++.++..+... ...+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 45699999999999999999999876543 3445553
No 231
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.37 E-value=0.053 Score=52.02 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=29.7
Q ss_pred HHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 218 VGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 218 l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
++.+.--+....+++|.|.+|+|||||+..++..+...
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 44444223378899999999999999999999877654
No 232
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.31 E-value=0.021 Score=51.48 Aligned_cols=22 Identities=45% Similarity=0.498 Sum_probs=20.0
Q ss_pred CEEEEEecCcchHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 233
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.30 E-value=0.027 Score=51.99 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...|+|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998763
No 234
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.29 E-value=0.025 Score=53.06 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=24.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...+|+|.|+.|+|||||++.++.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467999999999999999999998763
No 235
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.28 E-value=0.086 Score=53.78 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=29.7
Q ss_pred hccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 225 LAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 225 L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
|....++.|.|.+|+|||+||.+++.....+-..++|+
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 33788999999999999999999999876552234444
No 236
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.26 E-value=0.026 Score=51.67 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=24.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...+++|.|.+|+|||||++.++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 678999999999999999999987543
No 237
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.24 E-value=0.028 Score=50.64 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.5
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHh
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
++|+|.|..|+||||+++.++..+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999988763
No 238
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.20 E-value=0.028 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=21.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999876
No 239
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.20 E-value=0.026 Score=52.64 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+|+|.|..|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998865
No 240
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.13 E-value=0.1 Score=46.79 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=27.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
.|+|-|.-|+||||.++.+++.+......+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4789999999999999999998877654454443
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.12 E-value=0.047 Score=52.67 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=27.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
...+++|.|++|+|||||+..++..+... ...+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEE
Confidence 35699999999999999999999876543 333444
No 242
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.10 E-value=0.029 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=21.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 243
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.10 E-value=0.029 Score=50.76 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|+.|+|||||++.++.-+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999998765
No 244
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.09 E-value=0.06 Score=47.27 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=24.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.++++|.|..|+|||||+..+...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 5789999999999999999999876543
No 245
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.09 E-value=0.17 Score=46.00 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...|+|.|+.|+||||++..+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988654
No 246
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.09 E-value=0.077 Score=54.32 Aligned_cols=87 Identities=21% Similarity=0.183 Sum_probs=50.1
Q ss_pred cCCEEEEEecCcchHHHHHH-HHHHHHhc------cCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCC
Q 041923 227 AAPLVGIWGMGGIGKTTIAR-AVFNKISR------NFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIP 294 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~-~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~ 294 (529)
....++|.|.+|+|||+||. .++++... +.+..|.+..+++. ......+.+.+...-..+.. ..+
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR---~~Ev~~~~~~~~~~g~m~~tvvV~atad 237 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQK---RSTVAQLVKRLTDADAMKYTIVVSATAS 237 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCC---HHHHHHHHHHHHHTTCGGGEEEEEECTT
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCC---cHHHHHHHHHHHhcCCcccceEEEECCC
Confidence 77889999999999999965 56665442 13344555444432 33455666666542211110 111
Q ss_pred C-----------HHHHHHHh--CCCcEEEEEcCCC
Q 041923 295 D-----------IEFNFTRL--SRRKALIVLDDVT 316 (529)
Q Consensus 295 ~-----------~~~l~~~l--~~~~~LLVlDdv~ 316 (529)
. ...+.+++ +++.+||++||+.
T Consensus 238 ~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 238 DAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 1 11223333 4789999999994
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.05 E-value=0.03 Score=51.29 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=59.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc-cCcceEEEEeccccc----CC---CCcHHHHHHHHHHH-HhcCCCCC----
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR-NFEGSCFLQNVRKES----QS---PGGLARLQQKLLSE-VLRDENVI---- 293 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~----~~---~~~~~~l~~~ll~~-~~~~~~~~---- 293 (529)
...+++|.|+.|+|||||.+.+...... .+...+.+..-.... .. .... .....+... ...+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~-~~f~~~~~~~~f~E~~~~~~~~ 93 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH-DEFKEMISRDAFLEHAEVFGNY 93 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH-HHHHHHHHTTCEEEEEEETTEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH-HHHHHHHhcCHHHHHHHHHhcc
Confidence 6789999999999999999999886542 232233332110000 00 0111 122222110 00000000
Q ss_pred --CCHHHHHHHhCCCcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcchhh
Q 041923 294 --PDIEFNFTRLSRRKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQKVL 347 (529)
Q Consensus 294 --~~~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~ 347 (529)
.....+.+.+... -++||| + |......+...+. .+..|+|+|.+...+
T Consensus 94 yg~~~~~v~~~l~~G-~illLD-L-D~~~~~~i~~~l~---~~~tI~i~th~~~~l 143 (219)
T 1s96_A 94 YGTSREAIEQVLATG-VDVFLD-I-DWQGAQQIRQKMP---HARSIFILPPSKIEL 143 (219)
T ss_dssp EEEEHHHHHHHHTTT-CEEEEE-C-CHHHHHHHHHHCT---TCEEEEEECSSHHHH
T ss_pred CCCCHHHHHHHHhcC-CeEEEE-E-CHHHHHHHHHHcc---CCEEEEEECCCHHHH
Confidence 0134455666543 467788 4 4555556665554 467788888775443
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.02 E-value=0.028 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.444 Sum_probs=23.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|+.|+|||||++.++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999998754
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.02 E-value=0.059 Score=52.55 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=24.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++.|+|.+|+|||+||.+++....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 678999999999999999999998754
No 250
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.01 E-value=0.034 Score=51.35 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=23.2
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|+|.|++|+||||+++.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 251
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.94 E-value=0.047 Score=52.72 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=29.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEec
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNV 265 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~ 265 (529)
..++|+|+|-||+||||+|..++..+...-. .+.+.+.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~-~VlliD~ 77 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIGC 77 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEEeC
Confidence 5678999999999999999999998876533 3444333
No 252
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.94 E-value=0.072 Score=52.67 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=25.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...+|+|+|.+|+|||||+..++..+...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999999876544
No 253
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.91 E-value=0.26 Score=52.46 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+.+.|+|.+|.||||++..+...+.
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999998887654
No 254
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.91 E-value=0.12 Score=52.66 Aligned_cols=85 Identities=21% Similarity=0.187 Sum_probs=49.1
Q ss_pred cCCEEEEEecCcchHHHHHH-HHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC-----
Q 041923 227 AAPLVGIWGMGGIGKTTIAR-AVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD----- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~----- 295 (529)
....++|.|.+|+|||+||. .+++.. +.+..|.+..+++. ......+.+.+...-..+.. ..+.
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGeR---~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIGQK---QSTVAGVVETLRQHDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEESCC---HHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECCCc---chHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence 77889999999999999965 555543 23334444444432 34455666666542211111 1111
Q ss_pred ------HHHHHHHh--CCCcEEEEEcCCC
Q 041923 296 ------IEFNFTRL--SRRKALIVLDDVT 316 (529)
Q Consensus 296 ------~~~l~~~l--~~~~~LLVlDdv~ 316 (529)
...+.+++ +++.+||++||+.
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11223333 4789999999993
No 255
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.84 E-value=0.12 Score=52.73 Aligned_cols=85 Identities=25% Similarity=0.212 Sum_probs=49.4
Q ss_pred cCCEEEEEecCcchHHHHHH-HHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC-----
Q 041923 227 AAPLVGIWGMGGIGKTTIAR-AVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD----- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~----- 295 (529)
....++|.|.+|+|||+||. .+++.. ..+..|.+..+++. ......+.+.+...-..+.. ..+.
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~IGeR---~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r 248 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVAIGQK---KSAIARIIDKLRQYGAMEYTTVVVASASDPASLQ 248 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEEESCC---HHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEEcCCC---cHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHH
Confidence 78889999999999999965 565543 23334444444332 34456666666543211110 1111
Q ss_pred ------HHHHHHHh--CCCcEEEEEcCCC
Q 041923 296 ------IEFNFTRL--SRRKALIVLDDVT 316 (529)
Q Consensus 296 ------~~~l~~~l--~~~~~LLVlDdv~ 316 (529)
...+.+++ +++.+||++||+.
T Consensus 249 ~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 249 YIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 11223333 4789999999994
No 256
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.82 E-value=0.055 Score=50.71 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=24.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++.+.|.||+|||||+..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999998877
No 257
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.79 E-value=0.066 Score=50.88 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=25.8
Q ss_pred hccCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 225 LAAAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 225 L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
+....+++|.|.+|+|||||+..++..+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 336889999999999999999999986543
No 258
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.74 E-value=0.033 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 259
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.72 E-value=0.24 Score=45.68 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=25.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
....|+|.|+.|+||||++..++..+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999987654
No 260
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.66 E-value=0.036 Score=54.12 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.5
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHh
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998753
No 261
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.65 E-value=0.04 Score=48.28 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.6
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
++++|+|..|+|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999876543
No 262
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.63 E-value=0.027 Score=51.93 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=17.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHH-HHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVF-NKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~-~~~ 252 (529)
...+++|.|+.|+|||||++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 56799999999999999999998 654
No 263
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.62 E-value=0.058 Score=52.46 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=28.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...+++|+|.+|+||||++..++..+... ...+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 45689999999999999999999887654 3344444
No 264
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.60 E-value=0.089 Score=53.43 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=51.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC---cceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC---
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF---EGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD--- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~--- 295 (529)
....++|.|.+|+|||+|+.++++....+. +..+.+..+++. ......+.+.+...-..+.. ..+.
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER---~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~ 227 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGIT---NEEAQYFMSDFEKTGALERAVVFLNLADDPAV 227 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEEC---HHHHHHHHHHHHHHSGGGGEEEEEEETTSCHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCC---cHHHHHHHHHHHhccCccceEEEEECCCCCHH
Confidence 677889999999999999999998765322 123444444332 33456666666543211111 0111
Q ss_pred --------HHHHHHHh---CCCcEEEEEcCC
Q 041923 296 --------IEFNFTRL---SRRKALIVLDDV 315 (529)
Q Consensus 296 --------~~~l~~~l---~~~~~LLVlDdv 315 (529)
.-.+.+++ +++.+||++||+
T Consensus 228 ~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 228 ERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 22233444 368999999997
No 265
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.58 E-value=0.033 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.9
Q ss_pred CEEEEEecCcchHHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
++|+|+|++|+||||||..++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999865
No 266
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.58 E-value=0.039 Score=47.62 Aligned_cols=26 Identities=38% Similarity=0.468 Sum_probs=23.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|..|.|||||++.++.-+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 66799999999999999999999876
No 267
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.58 E-value=0.056 Score=52.11 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=27.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
...+++|.|+.|+|||||+..++..+... ...+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 45689999999999999999999876543 233444
No 268
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.58 E-value=0.024 Score=54.42 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=20.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|+|.|..|+||||+|+.+.+.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999998654
No 269
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.56 E-value=0.034 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
..+|+|+|++|+||||+|+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999983
No 270
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.55 E-value=0.039 Score=53.44 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...+|+|.|..|+|||||++.++.-+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 5679999999999999999999886643
No 271
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.48 E-value=0.044 Score=48.86 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.3
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHh
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+++|.|..|+|||||++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999998764
No 272
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.45 E-value=0.024 Score=55.16 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.5
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.++|+|.|+.|+|||||+..+++++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4589999999999999999999764
No 273
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.43 E-value=0.034 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.++|+|.|+.|+|||+||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998764
No 274
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.42 E-value=0.067 Score=50.38 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
++|+|.|-||+||||+|..++..+...-..++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 4678899999999999999999887653333333
No 275
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.38 E-value=0.029 Score=50.12 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=23.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+.|.|.|.+|+|||+||.+++.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999998763
No 276
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.35 E-value=0.12 Score=47.46 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=22.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
....|+|.|+.|+||||+++.+++.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 46789999999999999999999987654
No 277
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.31 E-value=0.042 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.9
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.+|.|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 278
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.28 E-value=0.04 Score=52.87 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.++|+|.|+.|+|||+||..+++++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999999999774
No 279
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.23 E-value=0.074 Score=48.98 Aligned_cols=28 Identities=25% Similarity=0.523 Sum_probs=25.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999998765
No 280
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.23 E-value=0.067 Score=52.14 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=25.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.+.+++|.|+.|+|||||+..++..+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999876544
No 281
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.19 E-value=0.099 Score=50.08 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=30.1
Q ss_pred hHHhHHHHhc-cCCEEEEEe---cCcchHHHHHHHHHHHHhcc
Q 041923 217 KVGEIESLLA-AAPLVGIWG---MGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 217 ~l~~l~~~L~-~~~~v~I~G---~gGiGKTtLa~~~~~~~~~~ 255 (529)
.+.++.+.+. ..++|+|++ -||+||||+|..++..+...
T Consensus 22 ~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~ 64 (298)
T 2oze_A 22 ILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKL 64 (298)
T ss_dssp HHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhC
Confidence 4555555555 667788876 89999999999999987654
No 282
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.19 E-value=0.13 Score=51.90 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=51.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCc---ceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC---
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFE---GSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD--- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~--- 295 (529)
....++|.|.+|+|||+|+.++++....+.+ ..+.+..+.+. ......+.+.+...-..+.. ..+.
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR---~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~ 226 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGIT---FEEAEFFMEDFRQTGAIDRSVMFMNLANDPAI 226 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEEC---HHHHHHHHHHHHHHTGGGGEEEEEEETTSCHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCC---cHHHHHHHHHHhhcCCccceEEEEECCCCCHH
Confidence 6677899999999999999999887544212 23334334332 34455666665443111100 0111
Q ss_pred --------HHHHHHHhC---CCcEEEEEcCCC
Q 041923 296 --------IEFNFTRLS---RRKALIVLDDVT 316 (529)
Q Consensus 296 --------~~~l~~~l~---~~~~LLVlDdv~ 316 (529)
.-.+.++++ ++.+||++||+.
T Consensus 227 ~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 227 ERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 123344443 689999999994
No 283
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.13 E-value=0.081 Score=50.51 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=24.0
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
++|+|+|-||+||||+|..++..+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 578889999999999999999987765
No 284
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.11 E-value=0.22 Score=45.21 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...|+|.|..|+||||+++.+++.+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987654
No 285
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.09 E-value=0.088 Score=51.74 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=24.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++.|+|.+|+|||+||.+++....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 677999999999999999999998743
No 286
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.08 E-value=0.16 Score=46.50 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=25.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
....|+|.|..|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5678999999999999999999998765
No 287
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.06 E-value=0.065 Score=49.53 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 288
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.06 E-value=0.087 Score=50.90 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=28.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc-cCcceEEEEecc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR-NFEGSCFLQNVR 266 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~ 266 (529)
...+|+|.|..|+|||||++.+...+.. .....+.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 4568999999999999999999886652 123345553333
No 289
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.96 E-value=0.051 Score=50.38 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=23.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
+..|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998764
No 290
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.94 E-value=0.077 Score=52.34 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...+++|.|..|+|||||+..++..+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 35689999999999999999999876543
No 291
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.93 E-value=0.089 Score=50.51 Aligned_cols=36 Identities=25% Similarity=0.154 Sum_probs=28.0
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEe
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQN 264 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~ 264 (529)
..+++|+|.+|+||||++..++..+... ...+.+.+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEec
Confidence 5689999999999999999999877654 33444443
No 292
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.89 E-value=0.041 Score=55.74 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+|.|+|++|+||||+|+.++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999988654
No 293
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.81 E-value=0.069 Score=52.62 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=24.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...++.|+|.+|+|||||+..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 78899999999999999999999876
No 294
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.093 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
....|+|.|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 295
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.80 E-value=0.054 Score=49.74 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|+|||||.+.++-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 678999999999999999999875
No 296
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.79 E-value=0.093 Score=48.61 Aligned_cols=34 Identities=24% Similarity=0.576 Sum_probs=26.1
Q ss_pred EEEEecCcchHHHHHHHHHHHHhccCcceEEEEec
Q 041923 231 VGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNV 265 (529)
Q Consensus 231 v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~ 265 (529)
|+|.|-||+||||+|..++..+...-. .+.+.+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~-~VlliD~ 36 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYD-KIYAVDG 36 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCS-CEEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCC-eEEEEeC
Confidence 667999999999999999998876543 3444333
No 297
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.76 E-value=0.49 Score=50.16 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|..|+|||||++.++--.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999998743
No 298
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.73 E-value=0.45 Score=43.84 Aligned_cols=41 Identities=24% Similarity=0.175 Sum_probs=29.7
Q ss_pred ccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 211 LVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+-=|+.+.+.+..++.. +-+.|+|..|.|||.+|..++...
T Consensus 92 ~~l~~~Q~~ai~~~~~~-~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhC-CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 33355555556665554 348899999999999999888765
No 299
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.73 E-value=0.054 Score=54.98 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.6
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.++|+|+|.+|+||||++..++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999877654
No 300
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.73 E-value=0.1 Score=48.98 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=27.5
Q ss_pred HHhHHHHhc-c---CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 218 VGEIESLLA-A---APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 218 l~~l~~~L~-~---~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..-+..+|. . ...+.|+|++|.|||.||..+++.+
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344666666 2 3479999999999999999999853
No 301
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.70 E-value=0.065 Score=53.42 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.0
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.++|+|.|+.|+||||||..++.++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35799999999999999999998764
No 302
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.66 E-value=0.056 Score=50.02 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|+|||||.+.++-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 678999999999999999998875
No 303
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.65 E-value=0.085 Score=54.55 Aligned_cols=45 Identities=4% Similarity=-0.020 Sum_probs=35.0
Q ss_pred cccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 210 HLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 210 ~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
..+.|.+..+.+.+... ...+|.+.|++|+||||+|+.++.++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35556555666666652 4578999999999999999999999864
No 304
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.57 E-value=0.17 Score=51.10 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=50.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc---------cCc-ceEEEEecccccCCCCcHHHHHHHHHHHHhcCC------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR---------NFE-GSCFLQNVRKESQSPGGLARLQQKLLSEVLRDE------ 290 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~---------~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~------ 290 (529)
....++|.|.+|+|||+|+.++++.... +.+ ..+.+..+.+. ......+.+.+...-..+.
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR---~~Ev~e~~~~l~~~g~~~rtvvv~~ 222 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGIT---QRELSYFIQEFERTGALSRSVLFLN 222 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEEC---HHHHHHHHHHHHHTSGGGGEEEEEE
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCc---hHHHHHHHHHhhhcccccceEEEEE
Confidence 6778899999999999999999887543 122 23444434332 3345556665544211100
Q ss_pred -CCCCC---------HHHHHHHh---CCCcEEEEEcCCC
Q 041923 291 -NVIPD---------IEFNFTRL---SRRKALIVLDDVT 316 (529)
Q Consensus 291 -~~~~~---------~~~l~~~l---~~~~~LLVlDdv~ 316 (529)
...+. .-.+.+++ .++.+||++||+.
T Consensus 223 t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 223 KADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp ETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 01111 12334444 3689999999994
No 305
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.57 E-value=0.29 Score=50.53 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=33.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
....++|.|..|+|||+|+.++++.... + .+.+..+++. ......+.+.+
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~~~~--~-~~V~~~iGER---~~Ev~e~~~~~ 275 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKWSDA--Q-VVIYIGCGER---GNEMTDVLEEF 275 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHHSSC--S-EEEEEECCSS---SSHHHHHHHHT
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhccCC--C-EEEEEEeccc---HHHHHHHHHHH
Confidence 7889999999999999999998765322 2 3333334332 34555655554
No 306
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.57 E-value=0.51 Score=47.07 Aligned_cols=42 Identities=31% Similarity=0.302 Sum_probs=33.2
Q ss_pred cccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 210 HLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 210 ~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.++|....++++.+.+. ....|.|+|.+|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 47777777887777665 4455699999999999999887764
No 307
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.56 E-value=0.13 Score=50.63 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=29.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh--ccCcceEEEEec
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS--RNFEGSCFLQNV 265 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~~~~ 265 (529)
..+++.+.|-||+||||+|..++..+. .. ...+.+.+.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~-g~~vllid~ 56 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQP-NEQFLLIST 56 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCT-TSCEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC-CCeEEEEEC
Confidence 568999999999999999999999887 44 334444433
No 308
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.54 E-value=0.06 Score=59.33 Aligned_cols=48 Identities=29% Similarity=0.399 Sum_probs=38.6
Q ss_pred CCcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
-...+|.+...+.|.+.+. ..+.+.++|++|+|||+||+.++......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3567888888888887654 34678999999999999999999987543
No 309
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.54 E-value=0.096 Score=54.56 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=25.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
...+|.++|++|.||||+|+.++..+...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356899999999999999999998775444
No 310
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.51 E-value=0.08 Score=47.94 Aligned_cols=26 Identities=31% Similarity=0.220 Sum_probs=23.4
Q ss_pred ccCCEEEEEecCcchHHHHHHHHHHH
Q 041923 226 AAAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 226 ~~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
....+++|.|..|.|||||++.++--
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999998865
No 311
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.50 E-value=0.11 Score=54.54 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=32.0
Q ss_pred cccchhHHhHHHHh----ccCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 212 VGVESKVGEIESLL----AAAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 212 vGR~~~l~~l~~~L----~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+.+....+.+.... ....+++|.|+.|+|||||++.++..+...
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 33334444455443 266799999999999999999999987643
No 312
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.50 E-value=0.035 Score=58.96 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=34.0
Q ss_pred CCcccccchhHHhHHHHhccCC-------------EEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAAAP-------------LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~-------------~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.+.++|.+...+.+.-.|.+.. .|.++|.+|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4568898876665544444332 69999999999999999998654
No 313
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.49 E-value=0.28 Score=50.03 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=48.4
Q ss_pred cCCEEEEEecCcchHHHHHH-HHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC-----
Q 041923 227 AAPLVGIWGMGGIGKTTIAR-AVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD----- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~----- 295 (529)
....++|.|..|+|||+|+. .++++ ...+..|.+..+++. ......+.+.+...-..... ..+.
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~--~~~dv~~V~~~IGeR---~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r 235 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ--RDSGIKCIYVAIGQK---ASTISNVVRKLEEHGALANTIVVVATASESAALQ 235 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT--SSSSCEEEEEEESCC---HHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh--ccCCceEEEEEecCC---hHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence 77889999999999999974 55553 233444444444432 33455666665443111110 1111
Q ss_pred ------HHHHHHHh--CCCcEEEEEcCCC
Q 041923 296 ------IEFNFTRL--SRRKALIVLDDVT 316 (529)
Q Consensus 296 ------~~~l~~~l--~~~~~LLVlDdv~ 316 (529)
...+.+++ +++.+||++||+.
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 236 YLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11222232 5789999999994
No 314
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.49 E-value=0.072 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.8
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-.|+|.|.+|+|||||.+.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 315
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.46 E-value=0.083 Score=52.98 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=27.5
Q ss_pred HHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 218 VGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 218 l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+..|..+|. ...++.|.|.+|+|||||+..++-..
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 344555553 78899999999999999999887543
No 316
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.46 E-value=0.098 Score=52.00 Aligned_cols=26 Identities=27% Similarity=0.132 Sum_probs=23.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
....++|+|++|.|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 67899999999999999999999754
No 317
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.43 E-value=0.1 Score=47.20 Aligned_cols=29 Identities=24% Similarity=0.615 Sum_probs=25.1
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFE 257 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 257 (529)
+.|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46899999999999999999998875544
No 318
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.42 E-value=0.085 Score=47.48 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=23.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|+|.|+.|+||||+++.+++++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999874
No 319
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.41 E-value=0.063 Score=49.74 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=23.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|..|+|||||++.++.-+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999987643
No 320
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.39 E-value=0.16 Score=45.89 Aligned_cols=121 Identities=14% Similarity=0.012 Sum_probs=53.2
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVL 287 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 287 (529)
...+|-|...+-.... ...+..|+|.-|.||||.+...+++....-..+..+....+. ..+ ...+.+.++
T Consensus 11 ~~~~~~~~~~m~~~~~---~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~---R~~----~~~I~Sr~G 80 (219)
T 3e2i_A 11 SSGLVPRGSHMYETYH---SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDD---RYH----KEKVVSHNG 80 (219)
T ss_dssp -------------------CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC------------------CBTT
T ss_pred ccCcccCCceEeeccC---CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCC---cch----hhhHHHhcC
Confidence 4456666554433222 578899999999999996665566654443333333211110 111 112222322
Q ss_pred cCCC--CCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEe
Q 041923 288 RDEN--VIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITT 341 (529)
Q Consensus 288 ~~~~--~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTt 341 (529)
.... .......+.+.+.++.-.|++|.+. +.++++.+.... ..|-.||+..
T Consensus 81 ~~~~a~~v~~~~di~~~i~~~~dvV~IDEaQFf~~~~v~~l~~la---~~gi~Vi~~G 135 (219)
T 3e2i_A 81 NAIEAINISKASEIMTHDLTNVDVIGIDEVQFFDDEIVSIVEKLS---ADGHRVIVAG 135 (219)
T ss_dssp BCCEEEEESSGGGGGGSCCTTCSEEEECCGGGSCTHHHHHHHHHH---HTTCEEEEEE
T ss_pred CceeeEEeCCHHHHHHHHhcCCCEEEEechhcCCHHHHHHHHHHH---HCCCEEEEee
Confidence 2211 1222334444455666799999984 444554443332 1466777764
No 321
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.36 E-value=0.07 Score=46.43 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..+-|.|.|.+|+||||||.++..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4668999999999999999999874
No 322
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.32 E-value=0.14 Score=50.03 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=28.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
..+++.+.|-||+||||+|..++..+...-..++.+
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vlli 50 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL 50 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 467899999999999999999999887654434444
No 323
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.30 E-value=0.13 Score=52.51 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=47.6
Q ss_pred cCCEEEEEecCcchHHHHHH-HHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcC--------CCC--CCC
Q 041923 227 AAPLVGIWGMGGIGKTTIAR-AVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRD--------ENV--IPD 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~--~~~ 295 (529)
....++|.|.+|+|||+||. .+++... .+..|.+..+++. ......+.+.+...-..+ .+. ...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR---~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQK---ASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESCC---HHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCC---chHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 67789999999999999965 5555432 3444444444432 234555555554321110 010 001
Q ss_pred ------HHHHHHHh--CCCcEEEEEcCCC
Q 041923 296 ------IEFNFTRL--SRRKALIVLDDVT 316 (529)
Q Consensus 296 ------~~~l~~~l--~~~~~LLVlDdv~ 316 (529)
...+.+++ +++.+||++||+.
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11122222 5799999999994
No 324
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.29 E-value=0.079 Score=49.53 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|.|||||.+.++--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999998863
No 325
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.26 E-value=0.089 Score=50.53 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.6
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
..++++.|.+|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4589999999999999999999877654
No 326
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.24 E-value=0.077 Score=49.26 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=22.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
. .+++|.|+.|.|||||.+.++--
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCC
Confidence 6 89999999999999999998863
No 327
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.24 E-value=0.11 Score=50.04 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=24.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
....++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 78899999999999999999998765
No 328
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.17 E-value=0.13 Score=50.06 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...++.|+|.+|+|||+||.+++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999764
No 329
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.17 E-value=0.069 Score=50.29 Aligned_cols=25 Identities=32% Similarity=0.451 Sum_probs=22.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|+.|+|||||.+.++--
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999998753
No 330
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.15 E-value=0.12 Score=50.64 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=24.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...+|+|.|.+|+|||||+..++..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999876543
No 331
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.13 E-value=0.063 Score=48.88 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|.|||||.+.++--
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999998763
No 332
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.13 E-value=0.071 Score=49.48 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|..|.|||||.+.++-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 678999999999999999999875
No 333
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.12 E-value=1.2 Score=42.24 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...++|.|.+|+|||||...+..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CceEEEEecCCCchHHHHHHHhc
Confidence 34689999999999999998864
No 334
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.12 E-value=0.072 Score=49.06 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|..|.|||||.+.++.-+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999987643
No 335
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.10 E-value=0.075 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.|+|.|.+|+|||||...+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 336
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.08 E-value=0.085 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|+|||||++.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999998863
No 337
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.06 E-value=0.072 Score=50.30 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=22.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|..|.|||||++.++.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 788999999999999999999875
No 338
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.05 E-value=0.082 Score=45.54 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.9
Q ss_pred CEEEEEecCcchHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999975
No 339
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.05 E-value=0.081 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 340
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.04 E-value=0.072 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|+|||||++.++-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 678999999999999999999875
No 341
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.03 E-value=0.074 Score=49.95 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|..|+|||||.+.++-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 678999999999999999999875
No 342
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.00 E-value=0.075 Score=50.08 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|+.|+|||||++.++--
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 6789999999999999999998763
No 343
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.99 E-value=0.08 Score=48.10 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.0
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+|+|.|+.|+||||+++.++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3479999999999999999998765
No 344
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.96 E-value=0.087 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 345
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.94 E-value=0.077 Score=49.48 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|.|||||++.++.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999998753
No 346
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.87 E-value=0.066 Score=47.12 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~ 250 (529)
-|+|.|.+|+|||||...++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999876
No 347
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.82 E-value=0.17 Score=46.62 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=27.2
Q ss_pred CCEEEEE-ecCcchHHHHHHHHHHHHhccCcceEEEEec
Q 041923 228 APLVGIW-GMGGIGKTTIARAVFNKISRNFEGSCFLQNV 265 (529)
Q Consensus 228 ~~~v~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~ 265 (529)
.++|+|+ +-||+||||+|..++..+.......+.+.+.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 4567776 4589999999999999887763334444444
No 348
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.81 E-value=0.089 Score=47.20 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=21.2
Q ss_pred cchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 214 VESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 214 R~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
+....+.+.+... ..--|+|.|.+|+|||||...+...
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3344444444443 4557899999999999999998863
No 349
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.79 E-value=0.082 Score=49.59 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|+|||||.+.++--
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999998763
No 350
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.78 E-value=0.082 Score=49.73 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|+|||||++.++.-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6789999999999999999998764
No 351
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.75 E-value=0.091 Score=44.97 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 352
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.74 E-value=0.098 Score=48.01 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=21.7
Q ss_pred CEEEEEecCcchHHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
-.++|.|++|+||||+|+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 353
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.72 E-value=0.085 Score=49.27 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|..|.|||||.+.++--+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 67899999999999999999987643
No 354
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.69 E-value=0.13 Score=50.14 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=27.2
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
..++...|-||+||||+|..++..+...-..++.+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 48 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVI 48 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEE
Confidence 45777889999999999999999887663333333
No 355
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.68 E-value=0.25 Score=44.89 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.2
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~ 250 (529)
-|+|.|.+|+|||+|+..+.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 388999999999999999986
No 356
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.66 E-value=0.27 Score=47.18 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=28.2
Q ss_pred cCCEEEEEec-CcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGM-GGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~-gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
..++|+|+|. ||+||||+|..++..+...-..++.+
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 5689999986 89999999999999887653334444
No 357
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.64 E-value=0.27 Score=46.42 Aligned_cols=46 Identities=24% Similarity=0.161 Sum_probs=32.6
Q ss_pred hHHhHHHHhc------cCCEEEEEec-CcchHHHHHHHHHHHHhccCcceEEE
Q 041923 217 KVGEIESLLA------AAPLVGIWGM-GGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 217 ~l~~l~~~L~------~~~~v~I~G~-gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
.+..|+..|. ..++|+|+|. ||+||||+|..++..+...-..++.+
T Consensus 65 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 65 KFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp HHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 3444554443 5678999875 89999999999999887654444444
No 358
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.61 E-value=0.14 Score=52.82 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.++|+|+|.+|+||||++..++..+...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4589999999999999999999877654
No 359
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.61 E-value=0.13 Score=50.30 Aligned_cols=28 Identities=36% Similarity=0.446 Sum_probs=24.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...+++|.|.+|+|||||...+...+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 6789999999999999999999876543
No 360
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.61 E-value=0.087 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|+|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 7789999999999999999998753
No 361
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.58 E-value=0.09 Score=49.23 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=22.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|+|||||.+.++.-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999998764
No 362
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.57 E-value=0.15 Score=52.40 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=25.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
....|.++|++|+||||+++.++..+...|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 355799999999999999999998765444
No 363
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.54 E-value=0.21 Score=50.36 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=51.9
Q ss_pred hHHHHhc-cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHH
Q 041923 220 EIESLLA-AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEF 298 (529)
Q Consensus 220 ~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~ 298 (529)
.|.+.+. ...+++|.|+.|+|||||...+...+... ...+++..-.-... ...... . .+ ...........
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~-~~~~~q--~----~v-~~~~g~~f~~~ 228 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFD-IDGIGQ--T----QV-NPRVDMTFARG 228 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSC-CSSSEE--E----EC-BGGGTBCHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhc-cCCcce--E----EE-ccccCcCHHHH
Confidence 4444444 66789999999999999999999876544 33344432110000 000000 0 00 00001111345
Q ss_pred HHHHhCCCcEEEEEcCCCCHHHHHH
Q 041923 299 NFTRLSRRKALIVLDDVTCFRQIKF 323 (529)
Q Consensus 299 l~~~l~~~~~LLVlDdv~~~~~l~~ 323 (529)
++..++..+-++++.++.+.+....
T Consensus 229 lr~~Lrq~pd~i~vgEiRd~et~~~ 253 (418)
T 1p9r_A 229 LRAILRQDPDVVMVGEIRDLETAQI 253 (418)
T ss_dssp HHHHGGGCCSEEEESCCCSHHHHHH
T ss_pred HHHHhccCCCeEEEcCcCCHHHHHH
Confidence 5666777777888888877655443
No 364
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.53 E-value=0.31 Score=56.73 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
....++|+|..|.|||||++.+...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 7889999999999999999988753
No 365
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.52 E-value=0.091 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=22.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|..|.|||||.+.++-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 678999999999999999999875
No 366
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.48 E-value=0.14 Score=45.77 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=25.1
Q ss_pred CEEEEE-ecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 229 PLVGIW-GMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 229 ~~v~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
++|+|+ +-||+||||+|..++..+...-..++.+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 466776 6799999999999999887643334433
No 367
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.47 E-value=0.079 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=22.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|..|.|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 677999999999999999999876
No 368
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.42 E-value=0.094 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|.|||||.+.++--
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 7789999999999999999998763
No 369
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.41 E-value=0.17 Score=51.08 Aligned_cols=28 Identities=29% Similarity=0.208 Sum_probs=24.6
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
..+++|.|.+|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999877654
No 370
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.41 E-value=0.1 Score=45.95 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.|+|.|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 371
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.34 E-value=0.099 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.5
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..|+|.|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999863
No 372
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.33 E-value=0.11 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 373
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.30 E-value=0.1 Score=45.08 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.2
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~ 250 (529)
-|+|.|.+|+|||||...+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 589999999999999999875
No 374
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.28 E-value=0.11 Score=44.29 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998863
No 375
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.27 E-value=0.25 Score=51.71 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=33.3
Q ss_pred cccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 210 HLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 210 ~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
..+.|....+.+.+... ...+|.|+|++|+||||+|+.+...+..
T Consensus 350 ~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 350 EWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 34445555556666552 4578999999999999999999987654
No 376
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.27 E-value=0.11 Score=45.54 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||+..+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 377
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.26 E-value=0.16 Score=49.92 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.6
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
..+|+|.|.+|+|||||...+......
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 568999999999999999999976543
No 378
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.25 E-value=0.15 Score=46.35 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=25.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
....|.|.|+.|+||||++..+++.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999998765
No 379
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.24 E-value=0.23 Score=45.36 Aligned_cols=107 Identities=11% Similarity=-0.002 Sum_probs=55.6
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
..+..++|.-|.||||-+...+++...+-..++++....+. ..+ ..+...+...... ........+.+.. +.-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~---Ryg-~~i~sr~G~~~~a--~~i~~~~di~~~~-~~~ 91 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT---RYS-SSFCTHDRNTMEA--LPACLLRDVAQEA-LGV 91 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC---CC------------CEE--EEESSGGGGHHHH-TTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc---cch-HHHHhhcCCeeEE--EecCCHHHHHHHh-ccC
Confidence 56889999999999999998888876654445554433221 223 3333333211110 0111222233333 223
Q ss_pred EEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 308 ALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 308 ~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
-+|++|.+.-...+..+...+. ..|..||+|.++
T Consensus 92 dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~ 125 (234)
T 2orv_A 92 AVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALD 125 (234)
T ss_dssp SEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCS
T ss_pred CEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEecc
Confidence 4899999842112444443332 157789999998
No 380
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.23 E-value=1.4 Score=45.84 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=30.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCc---ceEEEEecc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFE---GSCFLQNVR 266 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~~~~~~ 266 (529)
..+-+.|.|..|.|||+++..+...+...+. ..+++.+..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 4678999999999999999998887655442 345555544
No 381
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.21 E-value=0.11 Score=44.32 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999873
No 382
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.20 E-value=0.12 Score=44.08 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||+|...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 383
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.17 E-value=0.11 Score=44.53 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 384
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.11 E-value=0.18 Score=49.58 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=27.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...++.+.|-||+||||+|..++..+...-. .+.+.
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~-rVLlv 60 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGL-KVVIV 60 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSC-CEEEE
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCC-eEEEE
Confidence 4556777899999999999999998876633 34443
No 385
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.06 E-value=0.12 Score=44.28 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 386
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.02 E-value=0.11 Score=45.13 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||+|...+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999874
No 387
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.02 E-value=0.14 Score=46.22 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
....|+|.|.+|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999999874
No 388
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.02 E-value=0.12 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.3
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 389
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.01 E-value=0.11 Score=44.50 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=18.8
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~ 250 (529)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999863
No 390
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.00 E-value=0.12 Score=44.27 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
No 391
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.00 E-value=0.12 Score=44.17 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~ 250 (529)
-|+|.|.+|+|||||...+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999999986
No 392
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.97 E-value=0.14 Score=44.27 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
....|+|.|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999976
No 393
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.96 E-value=0.11 Score=44.37 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~ 250 (529)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999998864
No 394
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.94 E-value=0.14 Score=44.86 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+.+|+|..|.|||||+..++.-+
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999987654
No 395
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.93 E-value=0.12 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988864
No 396
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.87 E-value=0.39 Score=45.74 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=33.1
Q ss_pred hhHHhHHHHhc------cCCEEEEEec-CcchHHHHHHHHHHHHhccCcceEEE
Q 041923 216 SKVGEIESLLA------AAPLVGIWGM-GGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 216 ~~l~~l~~~L~------~~~~v~I~G~-gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
+.+..|+..|. ..++|+|+|. ||+||||+|..++..+...-..++.+
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 34555555443 5678888775 89999999999999887664444444
No 397
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.87 E-value=0.13 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.6
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||...+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 398
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.82 E-value=0.13 Score=44.72 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||...+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 399
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.82 E-value=0.13 Score=44.56 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 400
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.80 E-value=0.27 Score=52.75 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=33.2
Q ss_pred hhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 216 SKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 216 ~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
.+.+.+...|....+..|+|+||.|||+.+.++...+...- ..+.++
T Consensus 193 ~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-~~ILv~ 239 (646)
T 4b3f_X 193 SQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG-LKVLCC 239 (646)
T ss_dssp HHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred HHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEE
Confidence 45566777776677999999999999987777766544332 345554
No 401
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.79 E-value=0.15 Score=44.93 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=21.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
....|+|.|.+|+|||||...+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999975
No 402
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.78 E-value=0.17 Score=50.95 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=22.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
....++|.|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 677999999999999999999987
No 403
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.78 E-value=0.13 Score=45.39 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999999874
No 404
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.78 E-value=0.18 Score=53.15 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=24.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...+|.|.|++|+||||+|+.+.+++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3468999999999999999999998754
No 405
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.73 E-value=0.12 Score=44.24 Aligned_cols=21 Identities=29% Similarity=0.706 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~ 250 (529)
-|+|.|.+|+|||||...+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999986
No 406
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.73 E-value=0.11 Score=50.01 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=22.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
....++|+|..|.|||||++.++.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 788999999999999999998865
No 407
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.71 E-value=0.13 Score=43.93 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999863
No 408
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.71 E-value=0.13 Score=54.46 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=24.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...+|.|.|++|+||||+|+.+++.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3567999999999999999999998743
No 409
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.63 E-value=0.14 Score=45.32 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=20.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999863
No 410
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.62 E-value=0.21 Score=43.74 Aligned_cols=31 Identities=32% Similarity=0.242 Sum_probs=24.5
Q ss_pred hHHHHhc-cCCEEEEEecCcchHHHHHHHHHH
Q 041923 220 EIESLLA-AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 220 ~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
.+.+++. ....|+|.|.+|+|||||...+..
T Consensus 7 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 7 RIWRLFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHhcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 3444333 566799999999999999999985
No 411
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.61 E-value=0.052 Score=51.13 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=22.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
....|+|.|..|+||||+++.+++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999988665
No 412
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.61 E-value=0.14 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.++|.|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 413
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.58 E-value=0.13 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|.|||||.+.++.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 6789999999999999999998764
No 414
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.55 E-value=0.14 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=20.6
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 415
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.52 E-value=0.081 Score=48.69 Aligned_cols=25 Identities=32% Similarity=0.078 Sum_probs=21.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+|+|.|..|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999988754
No 416
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.49 E-value=0.14 Score=45.43 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~ 250 (529)
-|+|.|.+|+|||+|...+..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999885
No 417
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.45 E-value=0.14 Score=43.86 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999763
No 418
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.42 E-value=0.14 Score=44.89 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999998863
No 419
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.42 E-value=0.17 Score=46.37 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=23.5
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|+|.|+.|+||||+|+.++.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998874
No 420
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.40 E-value=0.16 Score=50.01 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=22.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|.|||||.+.++-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 678999999999999999999986
No 421
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.38 E-value=0.15 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
--|+|.|.+|+|||||...+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 422
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.35 E-value=0.15 Score=44.51 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
--|+|.|.+|+|||||...+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 423
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.34 E-value=0.15 Score=44.01 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999863
No 424
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.30 E-value=0.15 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.3
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 425
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=90.30 E-value=0.31 Score=48.02 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=27.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh--ccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS--RNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~--~~f~~~~~~ 262 (529)
...++...|-||+||||+|..++..+. ..-..++.+
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLv 54 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLI 54 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 356778889999999999999999887 543333333
No 426
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.29 E-value=0.42 Score=53.15 Aligned_cols=24 Identities=25% Similarity=-0.011 Sum_probs=21.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|.|||||.+.++-
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999843
No 427
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.27 E-value=0.16 Score=44.72 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.7
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
--|+|.|.+|+|||||...+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35899999999999999999875
No 428
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.26 E-value=0.16 Score=44.24 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=20.0
Q ss_pred CEEEEEecCcchHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
..|+|.|.+|+|||||...+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999985
No 429
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.23 E-value=0.17 Score=45.17 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...-|+|.|.+|+|||||...+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 455789999999999999999874
No 430
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.22 E-value=0.15 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998863
No 431
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.20 E-value=0.15 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.5
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
--|+|.|.+|+|||||...+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 432
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.19 E-value=0.13 Score=44.45 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~ 250 (529)
-|+|.|.+|+|||||...+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 488999999999999999875
No 433
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.19 E-value=0.18 Score=44.26 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...|+|.|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999864
No 434
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.18 E-value=0.14 Score=48.27 Aligned_cols=25 Identities=40% Similarity=0.460 Sum_probs=22.0
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+++|.|..|.|||||.+.++--.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999987643
No 435
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.17 E-value=0.15 Score=44.50 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 436
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.15 E-value=0.95 Score=46.90 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=23.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
....++|.|..|+|||+|+.++++..
T Consensus 231 rGqr~~Ifgg~g~GKT~L~~~ia~~~ 256 (600)
T 3vr4_A 231 KGGAAAVPGPFGAGKTVVQHQIAKWS 256 (600)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCEEeeecCCCccHHHHHHHHHhcc
Confidence 78899999999999999999998763
No 437
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.12 E-value=0.16 Score=44.17 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.2
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
--|+|.|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998863
No 438
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=90.10 E-value=0.33 Score=47.29 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=28.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
..+++.+.|-||+||||+|..++..+...-..+..+
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 466788899999999999999999887653333333
No 439
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.10 E-value=0.39 Score=50.06 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=31.4
Q ss_pred hHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 220 EIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 220 ~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
.+...|. ...+++|.|.+|+|||||+..++......-..++++
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3444544 788999999999999999999998765432223444
No 440
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.07 E-value=0.15 Score=44.84 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=23.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
++.|+|.+|+|||++|.+++.. -...+++.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yia 30 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIA 30 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEE
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEe
Confidence 3789999999999999999854 12355654
No 441
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.05 E-value=0.16 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||...+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999863
No 442
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.02 E-value=0.17 Score=49.83 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|.|||||.+.+.-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 678999999999999999998875
No 443
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.02 E-value=0.16 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999999874
No 444
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.01 E-value=0.24 Score=49.21 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=27.0
Q ss_pred cCCEEEEEe-cCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWG-MGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G-~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
..++|+|+| -||+||||+|..++..+...-..++.+
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli 178 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 466788875 899999999999999877653334433
No 445
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.01 E-value=0.16 Score=44.06 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 446
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.01 E-value=0.17 Score=45.53 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.0
Q ss_pred CCEEEEEecCcchHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 447
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.00 E-value=0.15 Score=44.64 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...|+|.|.+|+|||||...+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999998753
No 448
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.00 E-value=0.17 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.5
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||+..+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 449
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.99 E-value=0.18 Score=49.79 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=49.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCC--CCcHHHH--HHHHHHHHhcCCCCCCCHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQS--PGGLARL--QQKLLSEVLRDENVIPDIEFNFTR 302 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~--~~~~~~l--~~~ll~~~~~~~~~~~~~~~l~~~ 302 (529)
....++|+|..|.|||||++.++..+.. ....+.+.+..+.... .....-+ +.... ...........+...
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~----~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE----EENAPVTAATLLRSC 248 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSSCCCCTTCSSEEEEECC--------------CCHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCccccCccccCCEEEEeecCcccc----ccccccCHHHHHHHH
Confidence 7889999999999999999999875433 2344555433221110 0000000 00000 000111124556666
Q ss_pred hCCCcEEEEEcCCCCHHHHHHH
Q 041923 303 LSRRKALIVLDDVTCFRQIKFL 324 (529)
Q Consensus 303 l~~~~~LLVlDdv~~~~~l~~l 324 (529)
+...+-.+++|.+...+.++.+
T Consensus 249 l~~~pd~~l~~e~r~~~~~~~l 270 (361)
T 2gza_A 249 LRMKPTRILLAELRGGEAYDFI 270 (361)
T ss_dssp TTSCCSEEEESCCCSTHHHHHH
T ss_pred HhcCCCEEEEcCchHHHHHHHH
Confidence 6666667788888766555543
No 450
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.96 E-value=0.14 Score=45.16 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=19.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
--|+|.|.+|+|||||++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999996665543
No 451
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.95 E-value=0.18 Score=49.65 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=22.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|+|||||.+.++-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 678999999999999999999886
No 452
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.95 E-value=0.27 Score=45.85 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=27.7
Q ss_pred cCCEEEEE-ecCcchHHHHHHHHHHHHhccCcceEEEEec
Q 041923 227 AAPLVGIW-GMGGIGKTTIARAVFNKISRNFEGSCFLQNV 265 (529)
Q Consensus 227 ~~~~v~I~-G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~ 265 (529)
..++|+|+ +-||+||||+|..++..+...-. .+.+.+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~-~VlliD~ 43 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGK-RVLLVDL 43 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCC-CEEEEEC
Confidence 45678886 67899999999999998876533 3444333
No 453
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.94 E-value=0.12 Score=45.94 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.0
Q ss_pred CEEEEEecCcchHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVF 249 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~ 249 (529)
.-|+|.|.+|+|||||...+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 454
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.92 E-value=0.27 Score=44.61 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=25.4
Q ss_pred CEEEEEec-CcchHHHHHHHHHHHHhccCcceEEE
Q 041923 229 PLVGIWGM-GGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 229 ~~v~I~G~-gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
++|+|.|. ||+||||++..++..+..+-..+..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 46777775 89999999999999877654334443
No 455
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.91 E-value=0.17 Score=43.89 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 456
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.86 E-value=0.17 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..-|+|.|.+|+|||||+..+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 346899999999999999999874
No 457
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.85 E-value=0.22 Score=47.87 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=25.0
Q ss_pred HHhHHHHhccCCEEEEEecCcchHHHHHHHHH
Q 041923 218 VGEIESLLAAAPLVGIWGMGGIGKTTIARAVF 249 (529)
Q Consensus 218 l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~ 249 (529)
+++|.+.+ ...+++|.|.+|+|||||.+.+.
T Consensus 156 i~~L~~~l-~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYL-EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHT-TTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhc-cCcEEEEECCCCCCHHHHHHHHH
Confidence 44455544 46789999999999999999998
No 458
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.85 E-value=0.18 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.5
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
--|+|.|.+|+|||||...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 459
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.78 E-value=0.17 Score=44.73 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.2
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 460
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.78 E-value=0.17 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=22.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|+|||||.+.++-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHHc
Confidence 678999999999999999999886
No 461
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.75 E-value=0.18 Score=44.44 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
--|+|.|.+|+|||||...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 462
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.74 E-value=0.17 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.3
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||...+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999863
No 463
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.72 E-value=0.19 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|.|||||.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 678999999999999999999986
No 464
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.71 E-value=0.16 Score=44.05 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.7
Q ss_pred CEEEEEecCcchHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
.-|+|.|.+|+|||||...+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 465
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.70 E-value=0.17 Score=45.04 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 466
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.70 E-value=0.16 Score=49.94 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=22.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|+|||||.+.++-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 678999999999999999999886
No 467
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.62 E-value=0.3 Score=47.96 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=28.5
Q ss_pred hHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 220 EIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 220 ~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
.|...+. ....++|.|..|+|||||.+.++.....
T Consensus 61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4444444 8889999999999999999999987543
No 468
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.61 E-value=0.18 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
--|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 469
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.61 E-value=0.31 Score=51.68 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=28.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCF 261 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~ 261 (529)
..+++.+.|-||+||||+|..++..+...-..++.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLl 41 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLL 41 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEE
Confidence 46789999999999999999999987665333333
No 470
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.61 E-value=0.19 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=22.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|+|||||.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 678999999999999999999886
No 471
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.58 E-value=0.19 Score=49.78 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|.|||||.+.++-
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 678999999999999999999986
No 472
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.55 E-value=0.19 Score=44.24 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||...+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 473
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.55 E-value=0.18 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 474
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.52 E-value=0.14 Score=49.72 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.++++|+|+.|.|||||.+.+....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998653
No 475
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.52 E-value=0.19 Score=44.41 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.0
Q ss_pred CEEEEEecCcchHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
--|+|.|.+|+|||||...+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3689999999999999999987
No 476
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.50 E-value=0.2 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=22.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|+|||||.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHc
Confidence 678999999999999999999886
No 477
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.50 E-value=0.18 Score=45.76 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~ 250 (529)
-|+|.|.+|+|||+|...+..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999873
No 478
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.45 E-value=0.19 Score=44.34 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 479
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.44 E-value=0.19 Score=44.16 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999863
No 480
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.40 E-value=0.2 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=22.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|+.|+|||||.+.++-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 678999999999999999999886
No 481
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.37 E-value=0.37 Score=43.41 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=25.3
Q ss_pred EEEE-EecCcchHHHHHHHHHHHHhccCcceEEEEec
Q 041923 230 LVGI-WGMGGIGKTTIARAVFNKISRNFEGSCFLQNV 265 (529)
Q Consensus 230 ~v~I-~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~ 265 (529)
+|+| .+-||+||||+|..++..+...- .+.+.+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g--~VlliD~ 36 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG--ETLLIDG 36 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS--CEEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC--CEEEEEC
Confidence 4555 57799999999999999887664 4444443
No 482
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.33 E-value=0.2 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.6
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||...+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 483
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.31 E-value=0.25 Score=44.17 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.0
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+|+|+|++|+||+++|..+...+
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHc
Confidence 4689999999999999999887655
No 484
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.31 E-value=2 Score=46.86 Aligned_cols=35 Identities=23% Similarity=0.166 Sum_probs=26.9
Q ss_pred hHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHH
Q 041923 217 KVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 217 ~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..+.+...+.+...+.|.|..|.|||+++..+...
T Consensus 98 q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 98 QRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp GHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34555666667889999999999999977766543
No 485
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.23 E-value=0.22 Score=47.85 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..+.|.|.|.+|+||||||.++..+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3678999999999999999999874
No 486
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.20 E-value=0.2 Score=44.54 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
..-|+|.|.+|+|||||+..+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999999976
No 487
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.17 E-value=0.2 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.6
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-.|+|.|.+|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 488
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=89.11 E-value=0.42 Score=47.83 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=22.9
Q ss_pred cCCEEEEE-ecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIW-GMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~-G~gGiGKTtLa~~~~~~~~~ 254 (529)
..++|+|+ |-||+||||+|..++..+..
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 35667765 77999999999999998763
No 489
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.09 E-value=0.2 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++|.|..|.|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999987654
No 490
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.03 E-value=0.22 Score=44.49 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||...+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 491
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.03 E-value=0.2 Score=44.59 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||||+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
No 492
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.00 E-value=0.12 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
....|+|.|.+|+|||||...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 556799999999999999998764
No 493
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.94 E-value=0.22 Score=43.87 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.6
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 494
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.91 E-value=0.22 Score=44.56 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=20.0
Q ss_pred CEEEEEecCcchHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
.-|+|.|.+|+|||||...+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 3689999999999999999986
No 495
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.87 E-value=0.23 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-|+|.|.+|+|||+|+..+...
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 496
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.87 E-value=0.2 Score=43.65 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=20.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
-.|+|.|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 497
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.87 E-value=0.21 Score=44.43 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.8
Q ss_pred CEEEEEecCcchHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
--|+|.|.+|+|||||...+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 498
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.84 E-value=0.16 Score=44.20 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=20.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
....|+|.|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 355799999999999999988864
No 499
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.82 E-value=0.23 Score=44.30 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.0
Q ss_pred CEEEEEecCcchHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
.-|+|.|.+|+|||||+..+..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 4689999999999999999976
No 500
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.81 E-value=0.23 Score=44.22 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.3
Q ss_pred CEEEEEecCcchHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.-|+|.|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
Done!