Query 041924
Match_columns 66
No_of_seqs 115 out of 705
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:08:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.2 9E-12 2E-16 90.1 3.8 51 1-51 287-337 (358)
2 PRK11453 O-acetylserine/cystei 98.5 1.1E-07 2.4E-12 66.0 4.4 43 3-45 248-290 (299)
3 TIGR00817 tpt Tpt phosphate/ph 98.5 2.5E-08 5.5E-13 68.9 0.8 48 2-49 253-300 (302)
4 PRK10532 threonine and homoser 98.5 1.1E-07 2.3E-12 66.0 3.7 48 2-49 241-288 (293)
5 PRK11689 aromatic amino acid e 98.4 1.8E-07 3.9E-12 65.0 3.3 44 2-45 247-290 (295)
6 PRK11272 putative DMT superfam 98.3 7.1E-07 1.5E-11 61.8 3.4 45 2-46 245-289 (292)
7 COG2510 Predicted membrane pro 98.2 7.3E-07 1.6E-11 58.4 2.5 38 5-42 102-139 (140)
8 PF00892 EamA: EamA-like trans 98.2 2.5E-06 5.3E-11 50.4 3.9 40 2-41 86-125 (126)
9 PRK02971 4-amino-4-deoxy-L-ara 98.2 2.6E-06 5.6E-11 54.5 4.1 43 5-47 83-127 (129)
10 PF13536 EmrE: Multidrug resis 98.1 5.9E-06 1.3E-10 50.4 4.6 42 4-45 68-109 (113)
11 TIGR03340 phn_DUF6 phosphonate 98.1 4.2E-06 9E-11 57.6 3.9 38 2-39 243-280 (281)
12 PRK15051 4-amino-4-deoxy-L-ara 98.1 7.6E-06 1.6E-10 50.8 4.5 38 5-42 72-109 (111)
13 PTZ00343 triose or hexose phos 98.0 5.3E-06 1.1E-10 59.5 3.1 42 2-43 308-349 (350)
14 PRK15430 putative chlorampheni 97.9 1.6E-05 3.6E-10 55.2 3.6 42 2-43 245-286 (296)
15 PRK10452 multidrug efflux syst 97.7 8.9E-05 1.9E-09 47.2 4.6 40 5-44 66-105 (120)
16 PRK09541 emrE multidrug efflux 97.6 0.00014 3E-09 45.5 4.7 40 5-44 66-105 (110)
17 TIGR00950 2A78 Carboxylate/Ami 97.6 5.3E-05 1.1E-09 50.6 2.9 37 2-38 224-260 (260)
18 TIGR03340 phn_DUF6 phosphonate 97.6 9.9E-05 2.2E-09 50.8 4.0 41 3-43 96-136 (281)
19 COG0697 RhaT Permeases of the 97.6 0.00014 3.1E-09 48.1 4.6 40 4-43 249-288 (292)
20 PF06027 DUF914: Eukaryotic pr 97.4 0.00016 3.5E-09 52.6 3.7 42 6-47 269-310 (334)
21 PRK10650 multidrug efflux syst 97.3 0.0005 1.1E-08 43.1 4.3 36 5-40 71-106 (109)
22 TIGR00950 2A78 Carboxylate/Ami 97.3 0.0004 8.7E-09 46.3 3.9 41 3-43 80-120 (260)
23 TIGR00688 rarD rarD protein. T 97.3 0.00049 1.1E-08 46.5 4.4 39 4-42 104-142 (256)
24 COG2076 EmrE Membrane transpor 97.3 0.00062 1.3E-08 42.9 4.4 39 5-43 66-104 (106)
25 PRK11453 O-acetylserine/cystei 97.2 0.00053 1.1E-08 47.6 4.2 40 4-43 94-133 (299)
26 PRK11431 multidrug efflux syst 97.2 0.00076 1.7E-08 42.0 4.4 37 5-41 65-101 (105)
27 PRK15430 putative chlorampheni 97.1 0.00075 1.6E-08 46.9 4.4 39 4-42 107-145 (296)
28 PF03151 TPT: Triose-phosphate 97.1 0.00056 1.2E-08 42.5 3.3 38 5-42 116-153 (153)
29 KOG4510 Permease of the drug/m 97.0 0.00041 8.9E-09 50.7 2.1 40 5-44 132-171 (346)
30 PTZ00343 triose or hexose phos 97.0 0.00093 2E-08 48.0 3.9 39 4-42 148-186 (350)
31 PF08449 UAA: UAA transporter 96.9 0.001 2.2E-08 46.4 3.6 43 5-47 260-302 (303)
32 PRK11689 aromatic amino acid e 96.9 0.0012 2.6E-08 45.9 3.8 39 5-43 100-138 (295)
33 TIGR00776 RhaT RhaT L-rhamnose 96.9 0.0011 2.5E-08 46.3 3.7 40 4-43 246-289 (290)
34 TIGR00803 nst UDP-galactose tr 96.8 0.00096 2.1E-08 44.5 2.5 36 5-40 187-222 (222)
35 TIGR00817 tpt Tpt phosphate/ph 96.7 0.0021 4.5E-08 44.5 3.7 39 4-42 99-137 (302)
36 PRK11272 putative DMT superfam 96.6 0.0042 9.1E-08 43.0 4.3 39 4-43 104-142 (292)
37 COG0697 RhaT Permeases of the 96.6 0.004 8.7E-08 41.1 4.0 44 4-47 104-148 (292)
38 COG5006 rhtA Threonine/homoser 96.6 0.0035 7.5E-08 45.3 3.9 44 4-47 244-287 (292)
39 PLN00411 nodulin MtN21 family 96.5 0.0048 1E-07 44.9 4.3 42 3-44 111-158 (358)
40 PF06027 DUF914: Eukaryotic pr 96.3 0.0042 9E-08 45.3 3.4 41 5-45 114-154 (334)
41 PF00893 Multi_Drug_Res: Small 96.2 0.0071 1.5E-07 36.2 3.2 29 5-33 65-93 (93)
42 PF08449 UAA: UAA transporter 96.1 0.0051 1.1E-07 42.9 2.6 47 2-48 96-142 (303)
43 PF05653 Mg_trans_NIPA: Magnes 96.0 0.0067 1.5E-07 43.3 2.8 40 5-44 85-124 (300)
44 PF10639 UPF0546: Uncharacteri 95.9 0.007 1.5E-07 38.3 2.5 38 3-40 75-112 (113)
45 PF04142 Nuc_sug_transp: Nucle 95.9 0.0081 1.8E-07 41.7 3.0 43 4-46 51-93 (244)
46 TIGR00776 RhaT RhaT L-rhamnose 95.9 0.01 2.2E-07 41.5 3.5 41 4-44 94-138 (290)
47 KOG2922 Uncharacterized conser 95.6 0.003 6.6E-08 46.5 -0.1 47 4-50 98-144 (335)
48 PF04342 DUF486: Protein of un 95.3 0.017 3.6E-07 36.7 2.5 31 11-41 77-107 (108)
49 COG3169 Uncharacterized protei 95.1 0.055 1.2E-06 34.4 4.4 32 11-42 84-115 (116)
50 KOG1441 Glucose-6-phosphate/ph 94.8 0.01 2.3E-07 43.1 0.5 40 11-50 276-315 (316)
51 PF06800 Sugar_transport: Suga 94.2 0.075 1.6E-06 38.0 3.8 46 4-49 80-129 (269)
52 COG2962 RarD Predicted permeas 94.0 0.095 2.1E-06 38.1 4.1 41 5-45 107-147 (293)
53 KOG2234 Predicted UDP-galactos 93.5 0.18 3.9E-06 37.4 4.8 43 5-47 285-327 (345)
54 KOG1582 UDP-galactose transpor 93.2 0.16 3.5E-06 37.5 4.1 37 9-45 299-335 (367)
55 KOG1580 UDP-galactose transpor 92.9 0.15 3.3E-06 37.1 3.6 34 8-41 279-312 (337)
56 KOG1583 UDP-N-acetylglucosamin 92.4 0.069 1.5E-06 39.2 1.3 38 7-44 279-316 (330)
57 PRK11562 nitrite transporter N 91.8 0.17 3.7E-06 36.0 2.7 36 21-56 228-263 (268)
58 KOG4510 Permease of the drug/m 91.0 0.15 3.2E-06 37.6 1.8 39 6-44 289-327 (346)
59 KOG1581 UDP-galactose transpor 89.9 0.18 3.9E-06 37.2 1.4 39 8-46 279-317 (327)
60 COG2962 RarD Predicted permeas 87.4 0.99 2.2E-05 32.9 3.9 40 5-44 246-285 (293)
61 PRK13499 rhamnose-proton sympo 86.9 1.2 2.6E-05 32.8 4.1 39 5-43 109-154 (345)
62 KOG1442 GDP-fucose transporter 85.7 0.34 7.3E-06 35.8 0.7 37 4-40 136-172 (347)
63 KOG1442 GDP-fucose transporter 85.2 0.2 4.4E-06 36.9 -0.6 41 11-51 296-336 (347)
64 KOG3912 Predicted integral mem 84.2 1.1 2.3E-05 33.4 2.8 38 6-43 122-159 (372)
65 PF08507 COPI_assoc: COPI asso 84.0 2.2 4.8E-05 26.9 3.9 32 11-43 75-106 (136)
66 KOG2765 Predicted membrane pro 82.7 0.73 1.6E-05 35.0 1.4 41 6-46 195-235 (416)
67 COG4975 GlcU Putative glucose 82.2 0.18 4E-06 36.5 -1.8 46 5-50 95-144 (288)
68 PF02694 UPF0060: Uncharacteri 81.9 2.2 4.8E-05 27.0 3.2 40 6-45 67-106 (107)
69 PF04142 Nuc_sug_transp: Nucle 81.9 1.1 2.5E-05 30.9 2.1 30 4-33 215-244 (244)
70 PRK02237 hypothetical protein; 81.9 2.7 5.9E-05 26.7 3.6 39 7-45 70-108 (109)
71 PF01102 Glycophorin_A: Glycop 80.4 1.3 2.8E-05 28.4 1.8 22 25-46 72-93 (122)
72 KOG2234 Predicted UDP-galactos 79.8 3.7 8.1E-05 30.6 4.2 42 3-44 125-166 (345)
73 KOG4831 Unnamed protein [Funct 78.5 2.1 4.5E-05 27.6 2.3 38 3-41 86-124 (125)
74 PF04657 DUF606: Protein of un 78.2 3 6.5E-05 26.6 3.0 32 8-39 103-138 (138)
75 COG3238 Uncharacterized protei 78.2 4.3 9.4E-05 26.9 3.8 37 7-43 107-147 (150)
76 PF06800 Sugar_transport: Suga 77.3 2 4.4E-05 30.8 2.2 36 4-39 229-268 (269)
77 KOG1583 UDP-N-acetylglucosamin 73.4 2.3 4.9E-05 31.5 1.6 49 2-50 97-145 (330)
78 PF02009 Rifin_STEVOR: Rifin/s 72.8 5.1 0.00011 29.1 3.3 27 30-56 268-294 (299)
79 KOG4314 Predicted carbohydrate 71.7 2.7 5.8E-05 30.1 1.6 38 8-45 91-128 (290)
80 PF08693 SKG6: Transmembrane a 71.5 3.1 6.6E-05 22.0 1.5 19 28-46 21-39 (40)
81 KOG1580 UDP-galactose transpor 71.3 1.6 3.5E-05 31.9 0.5 39 7-45 122-160 (337)
82 PF07214 DUF1418: Protein of u 69.7 5.3 0.00012 24.8 2.5 31 11-41 22-57 (96)
83 PTZ00046 rifin; Provisional 69.7 8.1 0.00018 28.9 3.8 26 30-55 327-352 (358)
84 TIGR01477 RIFIN variant surfac 67.5 9.6 0.00021 28.5 3.8 29 27-55 319-347 (353)
85 PF13906 AA_permease_C: C-term 67.2 18 0.0004 19.6 4.2 41 2-42 5-45 (51)
86 PF15471 TMEM171: Transmembran 66.9 4.5 9.8E-05 29.7 2.0 23 26-48 163-185 (319)
87 TIGR00803 nst UDP-galactose tr 66.0 3.8 8.2E-05 27.1 1.4 45 3-47 11-55 (222)
88 PF05653 Mg_trans_NIPA: Magnes 64.8 9.8 0.00021 27.2 3.4 42 5-46 249-296 (300)
89 KOG1443 Predicted integral mem 64.7 13 0.00027 27.9 4.0 33 8-40 281-313 (349)
90 PRK10805 formate transporter; 64.1 5.8 0.00013 28.4 2.1 27 21-47 257-283 (285)
91 PF15099 PIRT: Phosphoinositid 63.9 2.6 5.6E-05 27.5 0.2 25 19-43 74-98 (129)
92 COG3086 RseC Positive regulato 62.2 7.9 0.00017 25.8 2.3 27 13-42 96-122 (150)
93 PF11295 DUF3096: Protein of u 62.0 12 0.00027 19.7 2.6 34 7-40 1-34 (39)
94 PF04304 DUF454: Protein of un 61.2 24 0.00053 19.5 4.0 33 8-40 37-69 (71)
95 PF04246 RseC_MucC: Positive r 60.6 15 0.00034 22.8 3.4 21 23-43 96-116 (135)
96 PRK13108 prolipoprotein diacyl 60.5 8.1 0.00018 29.6 2.4 23 22-44 254-276 (460)
97 TIGR01167 LPXTG_anchor LPXTG-m 59.6 13 0.00028 17.7 2.4 13 23-35 11-23 (34)
98 PRK03427 cell division protein 58.8 8.5 0.00018 28.6 2.2 23 26-48 10-32 (333)
99 PRK09713 focB putative formate 58.2 8.5 0.00018 27.6 2.1 24 21-44 256-279 (282)
100 PRK10655 potE putrescine trans 57.0 17 0.00037 26.3 3.5 41 5-45 389-429 (438)
101 PF15102 TMEM154: TMEM154 prot 56.1 8.6 0.00019 25.5 1.7 25 26-50 65-89 (146)
102 TIGR03810 arg_ornith_anti argi 55.3 19 0.00041 26.5 3.6 23 25-47 412-434 (468)
103 COG1971 Predicted membrane pro 54.4 20 0.00044 24.6 3.4 42 2-43 46-88 (190)
104 PRK11111 hypothetical protein; 53.5 18 0.00039 24.8 3.0 26 19-44 72-97 (214)
105 COG2116 FocA Formate/nitrite f 53.1 7.4 0.00016 28.0 1.1 26 21-46 236-261 (265)
106 PF01914 MarC: MarC family int 52.9 21 0.00046 24.1 3.3 28 18-45 65-92 (203)
107 PRK00269 zipA cell division pr 52.4 13 0.00028 27.2 2.3 29 22-50 5-33 (293)
108 PRK00052 prolipoprotein diacyl 52.3 9.7 0.00021 26.7 1.6 23 22-44 237-259 (269)
109 TIGR00544 lgt prolipoprotein d 51.4 11 0.00024 26.7 1.8 24 22-45 246-269 (278)
110 PF11381 DUF3185: Protein of u 50.3 7.1 0.00015 22.1 0.5 18 27-44 2-19 (59)
111 KOG2766 Predicted membrane pro 50.1 2.6 5.6E-05 31.1 -1.6 37 8-44 116-152 (336)
112 COG5346 Predicted membrane pro 49.7 29 0.00062 22.8 3.3 40 6-46 94-133 (136)
113 PF05393 Hum_adeno_E3A: Human 48.6 15 0.00032 22.7 1.8 29 22-50 35-63 (94)
114 PF03899 ATP_synt_I: ATP synth 48.4 46 0.001 18.8 3.9 37 8-44 11-47 (100)
115 PF07857 DUF1632: CEO family ( 48.2 16 0.00034 25.9 2.1 24 24-47 116-139 (254)
116 PF02038 ATP1G1_PLM_MAT8: ATP1 47.9 17 0.00036 20.1 1.8 20 25-44 18-37 (50)
117 PF02529 PetG: Cytochrome B6-F 47.8 16 0.00036 19.0 1.6 28 19-46 2-30 (37)
118 KOG2765 Predicted membrane pro 45.8 22 0.00047 27.2 2.7 40 7-46 355-394 (416)
119 TIGR00905 2A0302 transporter, 45.6 18 0.00039 26.7 2.2 22 25-46 417-438 (473)
120 KOG1441 Glucose-6-phosphate/ph 45.6 2.6 5.6E-05 30.8 -2.2 39 4-42 117-155 (316)
121 TIGR00739 yajC preprotein tran 45.3 26 0.00057 20.7 2.5 13 32-44 11-23 (84)
122 PRK12437 prolipoprotein diacyl 45.1 16 0.00035 25.6 1.8 24 21-44 234-257 (269)
123 PRK00665 petG cytochrome b6-f 44.6 19 0.00042 18.7 1.6 27 20-46 3-30 (37)
124 KOG3912 Predicted integral mem 44.4 33 0.00072 25.7 3.3 30 12-41 304-333 (372)
125 PF02699 YajC: Preprotein tran 44.3 22 0.00047 20.8 2.0 15 30-44 8-22 (82)
126 PRK06281 putative monovalent c 44.0 49 0.0011 21.8 3.9 41 4-44 11-52 (154)
127 PRK11357 frlA putative fructos 41.7 62 0.0013 23.5 4.4 42 3-45 390-436 (445)
128 TIGR02840 spore_YtaF putative 41.0 34 0.00074 23.1 2.8 39 4-43 41-82 (206)
129 PRK13499 rhamnose-proton sympo 40.7 47 0.001 24.6 3.7 39 4-43 298-342 (345)
130 PF10661 EssA: WXG100 protein 40.2 22 0.00047 23.2 1.7 15 27-41 125-140 (145)
131 PRK05585 yajC preprotein trans 40.2 37 0.0008 21.0 2.7 19 26-44 20-38 (106)
132 PF04156 IncA: IncA protein; 39.7 63 0.0014 20.9 3.9 17 28-44 48-64 (191)
133 CHL00008 petG cytochrome b6/f 39.4 25 0.00055 18.3 1.5 27 20-46 3-30 (37)
134 PF04191 PEMT: Phospholipid me 39.3 23 0.00049 20.6 1.6 22 24-45 1-22 (106)
135 PF13994 PgaD: PgaD-like prote 38.6 48 0.001 21.0 3.1 20 26-45 65-84 (138)
136 COG4736 CcoQ Cbb3-type cytochr 38.0 45 0.00098 18.9 2.6 18 31-48 20-37 (60)
137 PRK12509 putative monovalent c 37.9 77 0.0017 20.5 4.0 42 4-45 12-54 (137)
138 PF04971 Lysis_S: Lysis protei 37.8 35 0.00076 19.9 2.2 21 31-51 43-63 (68)
139 COG0682 Lgt Prolipoprotein dia 37.3 22 0.00048 25.8 1.5 23 25-47 255-277 (287)
140 COG1380 Putative effector of m 37.3 48 0.001 21.3 3.0 31 9-39 11-48 (128)
141 PF03818 MadM: Malonate/sodium 36.8 64 0.0014 18.4 3.1 36 8-43 20-56 (60)
142 PRK11469 hypothetical protein; 36.8 54 0.0012 22.0 3.3 42 2-43 46-88 (188)
143 PF11297 DUF3098: Protein of u 36.3 27 0.00058 20.4 1.5 25 23-47 8-32 (69)
144 PRK13823 conjugal transfer pro 35.3 84 0.0018 19.2 3.7 41 8-48 28-68 (94)
145 COG2034 Predicted membrane pro 35.1 36 0.00079 20.7 2.0 24 26-49 15-38 (85)
146 PF10828 DUF2570: Protein of u 34.8 19 0.0004 22.1 0.7 19 26-44 5-23 (110)
147 PRK08965 putative monovalent c 34.6 90 0.002 20.3 4.0 35 8-42 12-46 (162)
148 PRK12652 putative monovalent c 34.5 95 0.0021 22.9 4.5 34 8-41 173-206 (357)
149 KOG1444 Nucleotide-sugar trans 34.3 46 0.001 24.6 2.8 44 1-44 108-151 (314)
150 COG5070 VRG4 Nucleotide-sugar 34.2 33 0.00071 25.0 2.0 46 1-46 99-144 (309)
151 PRK10435 cadB lysine/cadaverin 33.9 63 0.0014 23.5 3.5 17 3-19 386-402 (435)
152 PF01790 LGT: Prolipoprotein d 33.8 36 0.00077 23.5 2.1 23 22-44 234-256 (256)
153 PRK01741 cell division protein 33.6 32 0.00069 25.6 1.9 27 24-50 6-32 (332)
154 COG5336 Uncharacterized protei 33.1 1.3E+02 0.0028 19.3 4.4 11 7-17 56-66 (116)
155 COG1288 Predicted membrane pro 32.5 36 0.00079 26.6 2.1 42 3-44 197-238 (481)
156 PRK05886 yajC preprotein trans 32.5 60 0.0013 20.3 2.8 11 32-42 12-22 (109)
157 TIGR02205 septum_zipA cell div 32.0 37 0.0008 24.5 2.0 24 26-49 7-30 (284)
158 PRK09579 multidrug efflux prot 31.7 81 0.0018 26.2 4.1 30 9-39 883-912 (1017)
159 TIGR00790 fnt formate/nitrite 31.6 42 0.0009 23.1 2.1 22 21-42 216-237 (239)
160 PRK15086 ethanolamine utilizat 31.3 67 0.0015 24.3 3.2 32 11-42 312-357 (372)
161 COG1742 Uncharacterized conser 31.2 56 0.0012 20.8 2.4 39 7-45 69-107 (109)
162 PF02656 DUF202: Domain of unk 31.2 97 0.0021 17.0 3.6 23 22-44 42-64 (73)
163 PF00873 ACR_tran: AcrB/AcrD/A 31.1 65 0.0014 26.4 3.4 25 9-33 901-925 (1021)
164 TIGR03141 cytochro_ccmD heme e 31.1 57 0.0012 17.0 2.1 22 30-51 15-36 (45)
165 PRK10591 hypothetical protein; 31.1 72 0.0016 19.7 2.9 31 11-41 22-57 (92)
166 PF04039 MnhB: Domain related 31.0 1.2E+02 0.0027 18.5 4.0 42 4-45 10-52 (124)
167 KOG1443 Predicted integral mem 30.8 47 0.001 24.9 2.4 42 4-45 118-159 (349)
168 PF10942 DUF2619: Protein of u 30.8 79 0.0017 18.5 2.9 33 4-39 36-68 (69)
169 PF06305 DUF1049: Protein of u 30.7 48 0.001 17.9 1.9 11 7-17 19-29 (68)
170 PRK12574 putative monovalent c 30.7 1.1E+02 0.0024 19.8 3.9 42 4-45 14-56 (141)
171 KOG3249 Uncharacterized conser 30.6 86 0.0019 21.5 3.4 34 9-43 107-141 (181)
172 PRK08386 putative monovalent c 30.6 1.2E+02 0.0027 19.7 4.1 41 4-44 13-54 (151)
173 PRK12405 electron transport co 30.0 45 0.00097 23.5 2.1 23 22-44 183-205 (231)
174 KOG3637 Vitronectin receptor, 30.0 46 0.00099 28.1 2.4 20 24-43 982-1001(1030)
175 PF07444 Ycf66_N: Ycf66 protei 29.9 48 0.001 19.9 1.9 24 21-44 4-27 (84)
176 PRK14782 lipoprotein signal pe 29.4 1.2E+02 0.0026 19.8 3.9 30 13-42 78-107 (157)
177 COG1862 YajC Preprotein transl 28.7 74 0.0016 19.5 2.7 23 24-46 9-31 (97)
178 PRK08383 putative monovalent c 28.7 1.8E+02 0.0038 19.3 4.7 38 5-42 4-46 (168)
179 COG4839 FtsL Protein required 28.2 66 0.0014 20.7 2.4 39 6-44 23-61 (120)
180 PRK10862 SoxR reducing system 27.9 1.2E+02 0.0026 19.7 3.7 7 11-17 93-99 (154)
181 PRK11387 S-methylmethionine tr 27.9 1.6E+02 0.0034 21.7 4.7 43 3-45 410-457 (471)
182 PF04550 Phage_holin_2: Phage 27.8 57 0.0012 20.0 2.0 24 16-39 24-47 (89)
183 PRK04335 cell division protein 27.6 47 0.001 24.5 1.9 27 25-51 8-34 (313)
184 PF15065 NCU-G1: Lysosomal tra 27.6 32 0.00068 25.6 1.0 17 29-45 331-347 (350)
185 PRK12508 putative monovalent c 27.4 1.6E+02 0.0034 19.0 4.1 41 4-44 13-54 (139)
186 PRK10527 hypothetical protein; 27.1 1.3E+02 0.0029 19.1 3.7 17 17-33 90-106 (125)
187 COG3476 Tryptophan-rich sensor 26.6 1.5E+02 0.0033 19.8 4.1 38 5-42 86-124 (161)
188 PF04995 CcmD: Heme exporter p 26.1 59 0.0013 16.9 1.7 22 27-48 11-32 (46)
189 TIGR00304 conserved hypothetic 26.0 42 0.00091 20.0 1.2 17 28-44 9-25 (77)
190 PF04133 Vps55: Vacuolar prote 25.8 58 0.0013 20.6 1.9 23 26-48 96-118 (120)
191 PF01226 Form_Nir_trans: Forma 25.7 45 0.00098 23.2 1.5 21 21-41 229-249 (250)
192 KOG1444 Nucleotide-sugar trans 25.4 65 0.0014 23.8 2.3 39 9-47 267-305 (314)
193 PRK09577 multidrug efflux prot 25.2 1.1E+02 0.0023 25.5 3.7 29 10-39 905-933 (1032)
194 COG4194 Predicted membrane pro 25.2 1.3E+02 0.0027 22.7 3.8 35 14-48 242-276 (350)
195 PRK10746 putative transport pr 25.0 1.7E+02 0.0037 21.6 4.5 42 3-44 403-449 (461)
196 PRK08387 putative monovalent c 24.9 1.8E+02 0.0039 18.5 4.1 41 4-44 11-52 (131)
197 PHA03265 envelope glycoprotein 24.9 34 0.00073 26.1 0.7 21 30-50 360-380 (402)
198 PF13268 DUF4059: Protein of u 24.8 56 0.0012 19.3 1.5 22 32-53 21-42 (72)
199 PRK10489 enterobactin exporter 24.7 1.9E+02 0.0041 20.2 4.5 18 27-44 383-400 (417)
200 PF04478 Mid2: Mid2 like cell 24.5 43 0.00093 22.4 1.1 15 28-42 58-72 (154)
201 PRK12567 putative monovalent c 24.4 1.6E+02 0.0034 20.5 3.9 41 4-44 98-139 (218)
202 TIGR00947 2A73 probable bicarb 24.3 1.3E+02 0.0027 22.3 3.7 42 5-46 18-59 (425)
203 PRK12573 putative monovalent c 24.3 1.8E+02 0.0038 18.8 4.0 41 4-44 14-55 (140)
204 PF06379 RhaT: L-rhamnose-prot 24.3 98 0.0021 23.2 3.1 39 6-44 110-155 (344)
205 PRK08388 putative monovalent c 24.1 74 0.0016 19.9 2.1 24 20-43 23-46 (119)
206 PF05454 DAG1: Dystroglycan (D 23.5 27 0.00058 25.4 0.0 21 24-44 151-171 (290)
207 PRK10644 arginine:agmatin anti 23.5 1.3E+02 0.0028 21.8 3.6 16 3-18 387-402 (445)
208 COG3216 Uncharacterized protei 23.4 79 0.0017 21.8 2.3 16 2-17 61-76 (184)
209 PF11384 DUF3188: Protein of u 23.4 63 0.0014 17.5 1.5 17 26-42 29-45 (49)
210 PF07960 CBP4: CBP4; InterPro 23.2 18 0.0004 23.4 -0.8 19 27-45 13-31 (128)
211 PF04341 DUF485: Protein of un 23.0 63 0.0014 19.1 1.6 23 21-43 51-73 (91)
212 PLN02822 serine palmitoyltrans 22.9 51 0.0011 24.8 1.4 31 16-46 28-58 (481)
213 PF13038 DUF3899: Domain of un 22.8 85 0.0019 18.2 2.1 17 26-42 6-22 (92)
214 PF05283 MGC-24: Multi-glycosy 22.8 72 0.0016 21.8 2.0 22 21-42 157-178 (186)
215 PRK14774 lipoprotein signal pe 22.7 1.9E+02 0.004 19.5 4.0 25 16-40 81-105 (185)
216 PF07213 DAP10: DAP10 membrane 22.3 77 0.0017 19.0 1.8 12 31-42 48-59 (79)
217 PF14927 Neurensin: Neurensin 22.0 86 0.0019 20.5 2.2 27 18-44 91-124 (140)
218 PRK15049 L-asparagine permease 21.9 2.5E+02 0.0054 21.1 4.9 8 4-11 423-430 (499)
219 TIGR03717 R_switched_YjbE inte 21.8 1.9E+02 0.0042 19.1 3.9 23 11-35 51-73 (176)
220 PRK10921 twin-arginine protein 21.7 2.2E+02 0.0048 20.0 4.3 12 8-19 198-209 (258)
221 PRK11273 glpT sn-glycerol-3-ph 21.7 1.8E+02 0.004 20.8 4.0 17 32-48 423-439 (452)
222 PF02673 BacA: Bacitracin resi 21.6 1.4E+02 0.003 21.1 3.3 39 6-44 88-130 (259)
223 PF15055 DUF4536: Domain of un 21.6 45 0.00098 18.1 0.7 19 28-46 9-27 (47)
224 PRK14401 membrane protein; Pro 21.5 1.7E+02 0.0037 20.1 3.6 22 21-42 112-133 (187)
225 PRK12579 putative monovalent c 21.5 2E+02 0.0044 20.5 4.1 41 4-44 118-159 (258)
226 TIGR00427 membrane protein, Ma 21.1 1.4E+02 0.003 20.2 3.1 14 22-35 72-85 (201)
227 PF15345 TMEM51: Transmembrane 21.1 57 0.0012 23.2 1.3 18 29-46 68-85 (233)
228 PF09656 PGPGW: Putative trans 20.9 81 0.0018 17.4 1.6 15 27-41 6-20 (53)
229 PRK11195 lysophospholipid tran 20.7 1.9E+02 0.0041 20.4 3.9 37 10-46 347-383 (393)
230 PRK12505 putative monovalent c 20.6 2.5E+02 0.0055 18.6 4.2 40 5-44 26-66 (159)
231 PF06645 SPC12: Microsomal sig 20.6 1.6E+02 0.0034 17.0 2.9 41 6-46 20-60 (76)
232 PF01004 Flavi_M: Flavivirus e 20.4 2E+02 0.0043 16.9 3.6 25 3-28 39-63 (75)
233 PF12273 RCR: Chitin synthesis 20.3 87 0.0019 19.4 1.9 8 32-39 14-21 (130)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.22 E-value=9e-12 Score=90.11 Aligned_cols=51 Identities=39% Similarity=0.824 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchhhh
Q 041924 1 MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAV 51 (66)
Q Consensus 1 ~F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~~ 51 (66)
+|.+++||+++++|+++|||++++.+++|+++|+.|++++.|++++|.+.+
T Consensus 287 ~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~ 337 (358)
T PLN00411 287 IFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQ 337 (358)
T ss_pred HHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 478999999999999999999999999999999999999999887776554
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.54 E-value=1.1e-07 Score=66.02 Aligned_cols=43 Identities=35% Similarity=0.463 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
.-++|++++++|++++||++++.+++|+++|++|+++..|+++
T Consensus 248 ~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 248 SLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 3589999999999999999999999999999999999998875
No 3
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.52 E-value=2.5e-08 Score=68.93 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=42.4
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchh
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRF 49 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~ 49 (66)
+..+.|++++++|++++||++|+.+++|+++++.|++++.+.|+++++
T Consensus 253 ~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~ 300 (302)
T TIGR00817 253 GNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK 300 (302)
T ss_pred HhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence 456889999999999999999999999999999999999977655443
No 4
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.51 E-value=1.1e-07 Score=66.03 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=42.8
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchh
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRF 49 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~ 49 (66)
+..++|++++++|+++|||+++..+++|+++|++|.+...+..++|.+
T Consensus 241 ~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 241 LMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 456899999999999999999999999999999999999887655443
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.43 E-value=1.8e-07 Score=64.98 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=40.2
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
+..+.|+++++++++++||+++..+++|+++|+.|+++..+..+
T Consensus 247 ~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 247 ASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 45789999999999999999999999999999999999977544
No 6
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.28 E-value=7.1e-07 Score=61.81 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=40.6
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
+.-+.|+++++++++++||++++.+++|+++|+.|+++..+.+++
T Consensus 245 ~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 245 YAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456899999999999999999999999999999999999876543
No 7
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.24 E-value=7.3e-07 Score=58.40 Aligned_cols=38 Identities=37% Similarity=0.536 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
++|++++++|++||+|.+++.+++|.++|++|..++..
T Consensus 102 ~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 102 TSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred ccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 58999999999999999999999999999999988764
No 8
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.19 E-value=2.5e-06 Score=50.41 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=37.2
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhh
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVL 41 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~ 41 (66)
+..++|+++.++++++++|+++..+++|.++++.|++++.
T Consensus 86 ~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 86 LQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999875
No 9
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.18 E-value=2.6e-06 Score=54.49 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHH--HhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924 5 LQLVIVALFSAI--AFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 5 L~~V~t~ils~l--~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
+.++++.++++. +|||++|+.+++|.++|++|++++.++++++
T Consensus 83 l~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~~ 127 (129)
T PRK02971 83 LSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKA 127 (129)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 344556666664 8999999999999999999999998765543
No 10
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.11 E-value=5.9e-06 Score=50.44 Aligned_cols=42 Identities=29% Similarity=0.532 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
.++|++++++|+++++|+++..+++|.+++.+|+.++.+.+.
T Consensus 68 ~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 68 SLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 478999999999999999999999999999999999998764
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.09 E-value=4.2e-06 Score=57.60 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhh
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYC 39 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l 39 (66)
+..++|++++++|+++|||+++..+++|+++|+.|+++
T Consensus 243 ~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 243 LRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred ecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 45689999999999999999999999999999999986
No 12
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.07 E-value=7.6e-06 Score=50.83 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
+.+++++++|+++|||++++.+++|.+++++|+.+...
T Consensus 72 l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 72 LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 68899999999999999999999999999999988653
No 13
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.99 E-value=5.3e-06 Score=59.47 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
++.+.||+++++|++++||++|+.+++|+++++.|++++.+.
T Consensus 308 ~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 308 ANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 456899999999999999999999999999999999998764
No 14
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.86 E-value=1.6e-05 Score=55.18 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
+.-+.|++++++|++++||++++.+++|+++|+.|+.+....
T Consensus 245 ~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 245 FQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999998888877653
No 15
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.68 E-value=8.9e-05 Score=47.20 Aligned_cols=40 Identities=28% Similarity=0.516 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+..+.++++++++++|++++.+++|.++|+.|+...-...
T Consensus 66 iG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 66 IGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 5677889999999999999999999999999998886544
No 16
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.61 E-value=0.00014 Score=45.52 Aligned_cols=40 Identities=30% Similarity=0.497 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+..+.++++++++++|++++.+++|.++|+.|+.+.-...
T Consensus 66 lG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4567789999999999999999999999999999986544
No 17
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.61 E-value=5.3e-05 Score=50.57 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhh
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLY 38 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~ 38 (66)
+..+.|+++++++++++||+++..+++|.++++.|++
T Consensus 224 ~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 224 LALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 3568999999999999999999999999999999863
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.58 E-value=9.9e-05 Score=50.76 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
...+|++++++++++++|+++..+++|.++++.|+++..+.
T Consensus 96 ~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 96 ARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 44689999999999999999999999999999999998764
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.58 E-value=0.00014 Score=48.08 Aligned_cols=40 Identities=30% Similarity=0.438 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
-+.|++++++++++++|+++..+++|+++++.|+.+....
T Consensus 249 ~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 249 LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999999999999999998876
No 20
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.44 E-value=0.00016 Score=52.63 Aligned_cols=42 Identities=10% Similarity=0.171 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924 6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
+.+++.+++++++|+++++-.++|-++|+.|+.++...++++
T Consensus 269 sd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 269 SDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred hhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 467789999999999999999999999999999999876443
No 21
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.29 E-value=0.0005 Score=43.10 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhh
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCV 40 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~ 40 (66)
+..+.+++.++++++|++++.+++|.++|+.|+...
T Consensus 71 iG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 71 FGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 456778999999999999999999999999999875
No 22
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.27 E-value=0.0004 Score=46.31 Aligned_cols=41 Identities=27% Similarity=0.177 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
..++|++++++++++++|+++..+++|.++.+.|+.+....
T Consensus 80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD 120 (260)
T ss_pred HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence 34789999999999999999999999999999999998754
No 23
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.27 E-value=0.00049 Score=46.47 Aligned_cols=39 Identities=10% Similarity=0.253 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
-..|++++++++++++|+++..+++|.++.++|+.+...
T Consensus 104 ~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 104 LINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999988764
No 24
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00062 Score=42.86 Aligned_cols=39 Identities=33% Similarity=0.492 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
+..+.+++.++++|+|++++.+++|..++++|+...-+.
T Consensus 66 iG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 66 IGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 346778999999999999999999999999999887654
No 25
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.22 E-value=0.00053 Score=47.64 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
.++|+++.++++++++|+++..+++|.++.+.|+++.++.
T Consensus 94 ~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 94 QAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 4789999999999999999999999999999999999865
No 26
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.21 E-value=0.00076 Score=41.95 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhh
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVL 41 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~ 41 (66)
+..+.+++.++++++|++++.+++|..+|+.|+...-
T Consensus 65 iG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 65 IGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 4567789999999999999999999999999998764
No 27
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.15 E-value=0.00075 Score=46.88 Aligned_cols=39 Identities=18% Similarity=0.407 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
...|++++++++++++|+++..+++|.++.+.|+.+..+
T Consensus 107 ~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 107 FINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999998875
No 28
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.14 E-value=0.00056 Score=42.46 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
+-.+.++++|+++++|++|..+++|.++.+.|.+++.|
T Consensus 116 ~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 116 VKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 45677899999999999999999999999999998764
No 29
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.02 E-value=0.00041 Score=50.69 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
.+|++++++||++|+|+.|....+|..+.+.|+.+..+..
T Consensus 132 ssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 132 SSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred cChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 5799999999999999999999999999999999988764
No 30
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.01 E-value=0.00093 Score=47.96 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
.+.|++++++++++++|+++..+++|.+++++|+.+...
T Consensus 148 a~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 148 AAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 478999999999999999999999999999999999875
No 31
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.94 E-value=0.001 Score=46.42 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
+.-++++++|++++++++++.+++|.+++..|..+..+.|+++
T Consensus 260 ~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 260 LRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 3456778999999999999999999999999999999887665
No 32
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.94 E-value=0.0012 Score=45.88 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
+.|+++.++++++++|+++..+++|.++-++|+++....
T Consensus 100 ~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 100 LWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 579999999999999999999999999999999998864
No 33
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=96.94 E-value=0.0011 Score=46.34 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHhccchhhhhh----hhhHHHHHhhhhhhcc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSL----IGAFLIVVGLYCVLWG 43 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~i----iG~~lIi~Gi~l~~~~ 43 (66)
-+.|+.++++++++|||..+..++ +|.++|+.|+.+...+
T Consensus 246 ~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 246 QLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 467999999999999999999999 9999999999887654
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.83 E-value=0.00096 Score=44.46 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhh
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCV 40 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~ 40 (66)
+.+++++++|++++|+++++.+++|+.+++.|++++
T Consensus 187 ~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 187 LSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 578999999999999999999999999999998763
No 35
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.73 E-value=0.0021 Score=44.47 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
.++|++++++++++++|+++..+++|.+++++|+.+...
T Consensus 99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~ 137 (302)
T TIGR00817 99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD 137 (302)
T ss_pred hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC
Confidence 468999999999999999999999999999999987653
No 36
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.56 E-value=0.0042 Score=43.01 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
.+.|+++++++++ ++|+++..+++|.++.++|++++.+.
T Consensus 104 ~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 104 ATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 4789999999986 69999999999999999999998765
No 37
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.56 E-value=0.004 Score=41.14 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHH-HHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924 4 PLQLVIVALFSA-IAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 4 pL~~V~t~ils~-l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
...|++++++++ ++++|+++..+++|.++...|++++.+.....
T Consensus 104 ~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 104 GLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 468999999997 77799999999999999999999999876443
No 38
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.56 E-value=0.0035 Score=45.31 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
.|.|.+++..++++|||.+|+.|+.|.+.|+++..=..+.-+++
T Consensus 244 SLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 244 SLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred HhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 57899999999999999999999999999999888777765443
No 39
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=96.46 E-value=0.0048 Score=44.89 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=38.1
Q ss_pred chHHHHHHHHHHHHH------hccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 3 SPLQLVIVALFSAIA------FAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 3 ~pL~~V~t~ils~l~------LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
...+|++++++++++ ++|+++..+++|.++-++|+.+++..+
T Consensus 111 ~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 111 SNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 467999999999999 699999999999999999999887643
No 40
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.35 E-value=0.0042 Score=45.32 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
.+.+++.++|+++|+++.++.+++|.++.++|+.++.++..
T Consensus 114 ~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 114 TSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 46789999999999999999999999999999999998764
No 41
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.16 E-value=0.0071 Score=36.24 Aligned_cols=29 Identities=38% Similarity=0.482 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHH
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLI 33 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lI 33 (66)
+..+.++++|++++||++++.+++|..+|
T Consensus 65 ~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 65 LGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 55678899999999999999999998875
No 42
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.09 E-value=0.0051 Score=42.95 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=40.9
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccch
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDR 48 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~ 48 (66)
+.-..|+.++++++++++++.+..++.+.+++.+|+.++...+.++.
T Consensus 96 ~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 96 FKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred HhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 34567899999999999999999999999999999999998764433
No 43
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.95 E-value=0.0067 Score=43.31 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
++.++.+++|.++|+|+++...++|.++++.|..+....-
T Consensus 85 ~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 85 LSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred hhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 4567889999999999999999999999999998776543
No 44
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.94 E-value=0.007 Score=38.34 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhh
Q 041924 3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCV 40 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~ 40 (66)
|.+.-++|++.++++.+|..+...++|.++|++|+.++
T Consensus 75 Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 75 NSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 45778999999998888888888999999999999875
No 45
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=95.92 E-value=0.0081 Score=41.65 Aligned_cols=43 Identities=26% Similarity=0.445 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
.+-.++|+++++++|+.+++..|+++.++..+|+.++-.+...
T Consensus 51 q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 51 QSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred hhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3568999999999999999999999999999999998876543
No 46
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.89 E-value=0.01 Score=41.54 Aligned_cols=41 Identities=34% Similarity=0.452 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHhccchhhhh----hhhhHHHHHhhhhhhccc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGS----LIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~----iiG~~lIi~Gi~l~~~~~ 44 (66)
-++++++++++.+++||..+..+ ++|.++++.|+++....+
T Consensus 94 ~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 94 GFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 36788999999999999999999 999999999999987654
No 47
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.003 Score=46.47 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchhh
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFA 50 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~ 50 (66)
.++.++.+++|..+|+|.+++..++|+++.+.|-++......+|++.
T Consensus 98 Alsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 98 ALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 36789999999999999999999999999999999888765554443
No 48
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=95.29 E-value=0.017 Score=36.65 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=28.2
Q ss_pred HHHHHHHhccchhhhhhhhhHHHHHhhhhhh
Q 041924 11 ALFSAIAFAERLHLGSLIGAFLIVVGLYCVL 41 (66)
Q Consensus 11 ~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~ 41 (66)
+.+|+++++|++++..+.|.++++.++|++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 6789999999999999999999999988754
No 49
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=0.055 Score=34.35 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=29.6
Q ss_pred HHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 11 ALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 11 ~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
+.+|.+.|+|++.+..+.|+.++..|+|++.+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 57899999999999999999999999998764
No 50
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.75 E-value=0.01 Score=43.12 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=35.2
Q ss_pred HHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchhh
Q 041924 11 ALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFA 50 (66)
Q Consensus 11 ~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~ 50 (66)
++.|+++|++++|+.++.|.++.+.|++++.+.|.+++++
T Consensus 276 i~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 276 IVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred EEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4568899999999999999999999999999988766553
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.16 E-value=0.075 Score=38.02 Aligned_cols=46 Identities=26% Similarity=0.365 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHhccchhhhh----hhhhHHHHHhhhhhhcccccchh
Q 041924 4 PLQLVIVALFSAIAFAERLHLGS----LIGAFLIVVGLYCVLWGKKKDRF 49 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~----iiG~~lIi~Gi~l~~~~~~~e~~ 49 (66)
-++.|.++++++++|||--+..+ +++.++++.|+++-.+.++++++
T Consensus 80 g~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 80 GLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 46789999999999999666554 34778999999999987655543
No 52
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=93.98 E-value=0.095 Score=38.11 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
+.|++.++++.+||+|.++..|++.-++-.+|+..-+|..+
T Consensus 107 InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 107 INPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 67999999999999999999999999999999999888654
No 53
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=93.50 E-value=0.18 Score=37.43 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
++.+++++.|+.+++-++|+...+|..+++..++++...++++
T Consensus 285 ~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 285 VAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 6789999999999999999999999999999999999766655
No 54
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.19 E-value=0.16 Score=37.53 Aligned_cols=37 Identities=22% Similarity=0.506 Sum_probs=34.7
Q ss_pred HHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 9 IVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 9 ~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
+|+++|++++..|+|....-|+.+|+.|+|+-..+|+
T Consensus 299 vTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 299 VTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 5789999999999999999999999999999999884
No 55
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.87 E-value=0.15 Score=37.11 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhh
Q 041924 8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVL 41 (66)
Q Consensus 8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~ 41 (66)
.|+++.|+++++.+++..|++|.+++..++..=.
T Consensus 279 fFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 279 FFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 5889999999999999999999999999987754
No 56
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=92.36 E-value=0.069 Score=39.24 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 7 LVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 7 ~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
=.++.++|.+.+..++++..++|++++..|.+++.-..
T Consensus 279 KFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 279 KFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred HHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999999988443
No 57
>PRK11562 nitrite transporter NirC; Provisional
Probab=91.78 E-value=0.17 Score=36.00 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=27.8
Q ss_pred chhhhhhhhhHHHHHhhhhhhcccccchhhhhhhhh
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLWGKKKDRFAVDEQKE 56 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~~~~~~~ 56 (66)
+.++|.++||.+++...|.++..+++++.+.|-.|.
T Consensus 228 pvtLGNivGG~v~vg~~y~~~~~~~~~~~~~~~~~~ 263 (268)
T PRK11562 228 WVTLGNTLSGAVFMGLGYWYATPKANRPVAAKFNQT 263 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCchhhhHhhh
Confidence 578899999999999999998887666655543333
No 58
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=90.98 E-value=0.15 Score=37.61 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
..|++.++..+|+|+-+|+.+++|+++|++....++..|
T Consensus 289 dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 289 DVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 578999999999999999999999999999888888655
No 59
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.85 E-value=0.18 Score=37.17 Aligned_cols=39 Identities=23% Similarity=0.467 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924 8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
++++++|.+.+|.++++-|++|..++..|+++-+.-+.+
T Consensus 279 ~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 279 MVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 567899999999999999999999999999998876544
No 60
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=87.40 E-value=0.99 Score=32.91 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+.|.+-.++|++++||+++.-+.+.-++|-+|+.++.+..
T Consensus 246 i~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 246 IEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999999999999999999999999999865
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=86.88 E-value=1.2 Score=32.82 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhccch-------hhhhhhhhHHHHHhhhhhhcc
Q 041924 5 LQLVIVALFSAIAFAERL-------HLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~l-------tl~~iiG~~lIi~Gi~l~~~~ 43 (66)
++.+++++++.+++||=- ...-++|.++++.|+.+..+.
T Consensus 109 l~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 109 ITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 567888899999998643 233678899999999999984
No 62
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=0.34 Score=35.80 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhh
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCV 40 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~ 40 (66)
.|..+|+++++|++|+++-+..-..++.+|+.|..+=
T Consensus 136 sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG 172 (347)
T KOG1442|consen 136 SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG 172 (347)
T ss_pred chhhhHHHHhHHhhcccccccccceeehhheehheec
Confidence 4788999999999999999999999999999987663
No 63
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.21 E-value=0.2 Score=36.95 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=37.3
Q ss_pred HHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchhhh
Q 041924 11 ALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFAV 51 (66)
Q Consensus 11 ~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~~ 51 (66)
+++|+.+++|..+..-+-|-++++.|-..+.|.|..|+++.
T Consensus 296 TvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 296 TVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred HHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 68899999999999999999999999999999988777763
No 64
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=84.23 E-value=1.1 Score=33.40 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
..+|+.++|.-+|+.+++..|+.|...+.+|+..+-..
T Consensus 122 viIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 122 VIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred hhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 46889999999999999999999999999999887654
No 65
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=84.05 E-value=2.2 Score=26.92 Aligned_cols=32 Identities=22% Similarity=0.557 Sum_probs=22.8
Q ss_pred HHHHHHHhccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 11 ALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 11 ~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
+.+|.+.+++ -.+..++|..++..|+.....+
T Consensus 75 if~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l~ 106 (136)
T PF08507_consen 75 IFLGTLCLGQ-SILSIIIGLLLFLVGVIYIILG 106 (136)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777 4456778888888888776643
No 66
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=82.73 E-value=0.73 Score=35.01 Aligned_cols=41 Identities=27% Similarity=0.438 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924 6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
+-+|+..+|.+|.+|.+|+..+++-++-++|+.++..++.+
T Consensus 195 Ss~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 195 SSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred chHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence 45788999999999999999999999999999999988643
No 67
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=82.24 E-value=0.18 Score=36.49 Aligned_cols=46 Identities=28% Similarity=0.445 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhccchhhhhhh----hhHHHHHhhhhhhcccccchhh
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLI----GAFLIVVGLYCVLWGKKKDRFA 50 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~ii----G~~lIi~Gi~l~~~~~~~e~~~ 50 (66)
.+.|.++.++++.|||=-+..+++ ..++++.|+++-.|.++.++++
T Consensus 95 ~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~ 144 (288)
T COG4975 95 MQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEE 144 (288)
T ss_pred hhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccc
Confidence 367889999999999988887754 4478899999988876544433
No 68
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=81.92 E-value=2.2 Score=26.97 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
-.+.+.+..+.+=+.+++..-++|+.+.+.|..+.++.+|
T Consensus 67 fI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 67 FIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 3567788899999999999999999999999999888765
No 69
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=81.90 E-value=1.1 Score=30.95 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHH
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLI 33 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lI 33 (66)
.++.++++++++++++.++++..++|.+++
T Consensus 215 a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 215 AVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 467899999999999999999999998764
No 70
>PRK02237 hypothetical protein; Provisional
Probab=81.86 E-value=2.7 Score=26.66 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 7 LVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 7 ~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
.+.+.+..+++=|.+++..-++|+++.+.|..+.++.+|
T Consensus 70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 456678889999999999999999999999988877654
No 71
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.35 E-value=1.3 Score=28.41 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=12.0
Q ss_pred hhhhhhHHHHHhhhhhhccccc
Q 041924 25 GSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
|.++|.++++..+++++++.+|
T Consensus 72 gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 72 GVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666676666666654333
No 72
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=79.82 E-value=3.7 Score=30.56 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
..+-.+.|++++.++|+++++..|+..-++..+|+.++-++.
T Consensus 125 ~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 125 YQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 346788899999999999999999999999999999988543
No 73
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=78.55 E-value=2.1 Score=27.60 Aligned_cols=38 Identities=29% Similarity=0.560 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHhccchhhh-hhhhhHHHHHhhhhhh
Q 041924 3 SPLQLVIVALFSAIAFAERLHLG-SLIGAFLIVVGLYCVL 41 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~-~iiG~~lIi~Gi~l~~ 41 (66)
+.++..++++++..+ ||.+--+ -+.|..++++|+.+++
T Consensus 86 nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 86 NSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred chhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhee
Confidence 457788999999876 7777665 5789999999998875
No 74
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=78.21 E-value=3 Score=26.62 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=23.2
Q ss_pred HHHHHHHHH----HhccchhhhhhhhhHHHHHhhhh
Q 041924 8 VIVALFSAI----AFAERLHLGSLIGAFLIVVGLYC 39 (66)
Q Consensus 8 V~t~ils~l----~LgE~ltl~~iiG~~lIi~Gi~l 39 (66)
+.+.+++.+ .-..++++.+++|.++++.|+++
T Consensus 103 ~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 103 IASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 344455554 23468899999999999999874
No 75
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.19 E-value=4.3 Score=26.85 Aligned_cols=37 Identities=19% Similarity=0.370 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhc----cchhhhhhhhhHHHHHhhhhhhcc
Q 041924 7 LVIVALFSAIAFA----ERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 7 ~V~t~ils~l~Lg----E~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
.+.+.+++.+=+. .++++..++|.+++++|++++-+.
T Consensus 107 li~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 107 LIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred HHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 4455566665555 788999999999999996665543
No 76
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=77.27 E-value=2 Score=30.77 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHhccchhhh----hhhhhHHHHHhhhh
Q 041924 4 PLQLVIVALFSAIAFAERLHLG----SLIGAFLIVVGLYC 39 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~----~iiG~~lIi~Gi~l 39 (66)
=+++|++++.+.++|||.-+-. .++|.++++.|..+
T Consensus 229 Q~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 229 QLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 3678999999999999998865 45677777777543
No 77
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=73.38 E-value=2.3 Score=31.47 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=41.8
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccchhh
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDRFA 50 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~ 50 (66)
|..-+++.+++++|+++|-+-++.|+..-+++-+|++++...+.++-+.
T Consensus 97 fRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 97 FRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred EecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 3445788899999999999999999999999999999999887654443
No 78
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=72.83 E-value=5.1 Score=29.08 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=19.0
Q ss_pred hHHHHHhhhhhhcccccchhhhhhhhh
Q 041924 30 AFLIVVGLYCVLWGKKKDRFAVDEQKE 56 (66)
Q Consensus 30 ~~lIi~Gi~l~~~~~~~e~~~~~~~~~ 56 (66)
.++|+.=+||.++.+|+.+.+++.|+-
T Consensus 268 IVLIMvIIYLILRYRRKKKmkKKlQYi 294 (299)
T PF02009_consen 268 IVLIMVIIYLILRYRRKKKMKKKLQYI 294 (299)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 466777778888888766666666653
No 79
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=71.67 E-value=2.7 Score=30.11 Aligned_cols=38 Identities=16% Similarity=0.354 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
-+.-+++++.|++.+....++..++-+.|+.++.+..+
T Consensus 91 AFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 91 AFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 46679999999999999999999999999998887654
No 80
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=71.52 E-value=3.1 Score=22.03 Aligned_cols=19 Identities=32% Similarity=0.924 Sum_probs=13.3
Q ss_pred hhhHHHHHhhhhhhccccc
Q 041924 28 IGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 28 iG~~lIi~Gi~l~~~~~~~ 46 (66)
+|.++++.|++++.|.+++
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 4566777788888776654
No 81
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=71.31 E-value=1.6 Score=31.89 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 7 LVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 7 ~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
||=.+++++++.+.+-+|....--++|+.|+.++.+..+
T Consensus 122 PIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~ 160 (337)
T KOG1580|consen 122 PIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN 160 (337)
T ss_pred CcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc
Confidence 455679999999999999999999999999999998643
No 82
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=69.70 E-value=5.3 Score=24.81 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=20.9
Q ss_pred HHHHHHHhccchhhhh-----hhhhHHHHHhhhhhh
Q 041924 11 ALFSAIAFAERLHLGS-----LIGAFLIVVGLYCVL 41 (66)
Q Consensus 11 ~ils~l~LgE~ltl~~-----iiG~~lIi~Gi~l~~ 41 (66)
.+++|+-+++.+++.. -.+.++|+.|+.+++
T Consensus 22 Lv~a~Lsin~~l~LP~~l~~~~aai~MIf~Gi~lMl 57 (96)
T PF07214_consen 22 LVLAYLSINDYLSLPAPLSTPTAAIAMIFVGIGLML 57 (96)
T ss_pred HHHHHHHHcccccCcccccCchHHHHHHHHHHHHHH
Confidence 4667888888887763 334467777776654
No 83
>PTZ00046 rifin; Provisional
Probab=69.70 E-value=8.1 Score=28.94 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=20.0
Q ss_pred hHHHHHhhhhhhcccccchhhhhhhh
Q 041924 30 AFLIVVGLYCVLWGKKKDRFAVDEQK 55 (66)
Q Consensus 30 ~~lIi~Gi~l~~~~~~~e~~~~~~~~ 55 (66)
.+||+.=+||.++.+|+++.+++-|+
T Consensus 327 IVLIMvIIYLILRYRRKKKMkKKLQY 352 (358)
T PTZ00046 327 IVLIMVIIYLILRYRRKKKMKKKLQY 352 (358)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHH
Confidence 57777888999998888777766554
No 84
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=67.53 E-value=9.6 Score=28.53 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=21.2
Q ss_pred hhhhHHHHHhhhhhhcccccchhhhhhhh
Q 041924 27 LIGAFLIVVGLYCVLWGKKKDRFAVDEQK 55 (66)
Q Consensus 27 iiG~~lIi~Gi~l~~~~~~~e~~~~~~~~ 55 (66)
++=.+||+.=+||.++.+|+++.+++-|+
T Consensus 319 IvvIVLIMvIIYLILRYRRKKKMkKKLQY 347 (353)
T TIGR01477 319 ILIIVLIMVIIYLILRYRRKKKMKKKLQY 347 (353)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence 33457777888999998887777765554
No 85
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=67.25 E-value=18 Score=19.62 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
+.|+.|..++++-..++.+--...-+..++....|+..+..
T Consensus 5 ~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~ 45 (51)
T PF13906_consen 5 LVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFG 45 (51)
T ss_pred cccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHh
Confidence 46899999999999888876666666666777777776653
No 86
>PF15471 TMEM171: Transmembrane protein family 171
Probab=66.86 E-value=4.5 Score=29.72 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=19.2
Q ss_pred hhhhhHHHHHhhhhhhcccccch
Q 041924 26 SLIGAFLIVVGLYCVLWGKKKDR 48 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~~~~~e~ 48 (66)
||.|-++++.|+.++...+-|++
T Consensus 163 QImGPlIVl~GLCFFVVAHvKKr 185 (319)
T PF15471_consen 163 QIMGPLIVLVGLCFFVVAHVKKR 185 (319)
T ss_pred hhhhhHHHHHhhhhhheeeeeec
Confidence 79999999999999998764443
No 87
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=66.04 E-value=3.8 Score=27.09 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924 3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
....++++++.++.+.+++.+..+++..+++..|++...+++.+.
T Consensus 11 ~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~ 55 (222)
T TIGR00803 11 KQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQW 55 (222)
T ss_pred HhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHH
Confidence 345678889999999999999999999999999999877766543
No 88
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=64.79 E-value=9.8 Score=27.17 Aligned_cols=42 Identities=26% Similarity=0.387 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhccchhh------hhhhhhHHHHHhhhhhhccccc
Q 041924 5 LQLVIVALFSAIAFAERLHL------GSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl------~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
+-...+++-|.++++|--+. ....|..+++.|+++....|..
T Consensus 249 ~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~ 296 (300)
T PF05653_consen 249 FFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDK 296 (300)
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCch
Confidence 34556677788888976543 3577889999999998765443
No 89
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=64.74 E-value=13 Score=27.91 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhh
Q 041924 8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCV 40 (66)
Q Consensus 8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~ 40 (66)
+.+.++|.+++++.++...++|..+..+|+.+.
T Consensus 281 l~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 281 VCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999987
No 90
>PRK10805 formate transporter; Provisional
Probab=64.13 E-value=5.8 Score=28.40 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=22.1
Q ss_pred chhhhhhhhhHHHHHhhhhhhcccccc
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
|.|+|.++||.++++..|.++..+.++
T Consensus 257 pvtlGNiVGG~v~vg~~y~~~~~~~~~ 283 (285)
T PRK10805 257 PVTIGNIIGGGLLVGLTYWVIYLRGND 283 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 678899999999999999888765443
No 91
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=63.88 E-value=2.6 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=20.7
Q ss_pred ccchhhhhhhhhHHHHHhhhhhhcc
Q 041924 19 AERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 19 gE~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
+...+..++.|-++.-.|+++...+
T Consensus 74 n~~~si~~~~G~vlLs~GLmlL~~~ 98 (129)
T PF15099_consen 74 NSHGSIISIFGPVLLSLGLMLLACS 98 (129)
T ss_pred cCCcchhhhehHHHHHHHHHHHHhh
Confidence 7777778899999999999887654
No 92
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=62.24 E-value=7.9 Score=25.83 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=14.7
Q ss_pred HHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 13 FSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 13 ls~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
..+++++|.+.. +|+++-.+.-|++.+
T Consensus 96 a~~L~~~e~~~~---~~~~lg~~l~fl~~r 122 (150)
T COG3086 96 AQYLFFSELIVI---FGAFLGLALGFLLAR 122 (150)
T ss_pred HHHHhhhhHHHH---HHHHHHHHHHHHHHH
Confidence 377778887664 344443344444443
No 93
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=62.01 E-value=12 Score=19.66 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhh
Q 041924 7 LVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCV 40 (66)
Q Consensus 7 ~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~ 40 (66)
|+.+.+.+.++|=-|=-++-+++.-+|+.|+.-.
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lgL 34 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLGL 34 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888888888888899999999988643
No 94
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=61.21 E-value=24 Score=19.53 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhh
Q 041924 8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCV 40 (66)
Q Consensus 8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~ 40 (66)
..+..++.+++.+++.+.-+++++.++..+++.
T Consensus 37 ~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~i~ 69 (71)
T PF04304_consen 37 WLSMGISAFFFVPNLWVRIVLAAILLIVAIYIL 69 (71)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhe
Confidence 344555557888887877777777765555543
No 95
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=60.60 E-value=15 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=11.9
Q ss_pred hhhhhhhhHHHHHhhhhhhcc
Q 041924 23 HLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 23 tl~~iiG~~lIi~Gi~l~~~~ 43 (66)
.+.+++++++.+...|+.++.
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~ 116 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRL 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666655555555543
No 96
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=60.55 E-value=8.1 Score=29.63 Aligned_cols=23 Identities=9% Similarity=0.387 Sum_probs=20.1
Q ss_pred hhhhhhhhhHHHHHhhhhhhccc
Q 041924 22 LHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 22 ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
++.+|++...+++.|++++++.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999998887754
No 97
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=59.58 E-value=13 Score=17.71 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=6.3
Q ss_pred hhhhhhhhHHHHH
Q 041924 23 HLGSLIGAFLIVV 35 (66)
Q Consensus 23 tl~~iiG~~lIi~ 35 (66)
++..++|.+++..
T Consensus 11 ~~~~~~G~~l~~~ 23 (34)
T TIGR01167 11 SLLLLLGLLLLGL 23 (34)
T ss_pred HHHHHHHHHHHHH
Confidence 3445556644433
No 98
>PRK03427 cell division protein ZipA; Provisional
Probab=58.83 E-value=8.5 Score=28.57 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=17.4
Q ss_pred hhhhhHHHHHhhhhhhcccccch
Q 041924 26 SLIGAFLIVVGLYCVLWGKKKDR 48 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~~~~~e~ 48 (66)
.++|++-|++=++.=+|..|||+
T Consensus 10 ivvGAIAIiAlL~HGlWtsRKer 32 (333)
T PRK03427 10 IIVGAIAIIALLVHGFWTSRKER 32 (333)
T ss_pred HHHHHHHHHHHHHHhhhhccccc
Confidence 46788888877777789877776
No 99
>PRK09713 focB putative formate transporter; Provisional
Probab=58.16 E-value=8.5 Score=27.60 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=20.5
Q ss_pred chhhhhhhhhHHHHHhhhhhhccc
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+.|+|.++||.+++...|.++..|
T Consensus 256 pvtLGNiVGG~v~vg~~y~~~~~~ 279 (282)
T PRK09713 256 PVMLGNIIGGAVLVSMCYRAIYLR 279 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 678899999999999888888744
No 100
>PRK10655 potE putrescine transporter; Provisional
Probab=56.97 E-value=17 Score=26.25 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
+.++++.+++.+.+-.........|..+++.|+..+.+..+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 429 (438)
T PRK10655 389 FIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISP 429 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433332222222345678888888777755433
No 101
>PF15102 TMEM154: TMEM154 protein family
Probab=56.15 E-value=8.6 Score=25.49 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=16.5
Q ss_pred hhhhhHHHHHhhhhhhcccccchhh
Q 041924 26 SLIGAFLIVVGLYCVLWGKKKDRFA 50 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~~~~~e~~~ 50 (66)
.+++.+|++..++++...||+..++
T Consensus 65 ~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 65 LVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHHHheeEEeecccCC
Confidence 4566777777788888776544433
No 102
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=55.33 E-value=19 Score=26.46 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=17.3
Q ss_pred hhhhhhHHHHHhhhhhhcccccc
Q 041924 25 GSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
...+|.++++.|+.++.+.++++
T Consensus 412 ~~~~~~~~~~~g~~~y~~~~~~~ 434 (468)
T TIGR03810 412 YLLLSAILYAPGIYFYARARKEK 434 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678888999999988755543
No 103
>COG1971 Predicted membrane protein [Function unknown]
Probab=54.37 E-value=20 Score=24.63 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=27.9
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhh-hHHHHHhhhhhhcc
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIG-AFLIVVGLYCVLWG 43 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG-~~lIi~Gi~l~~~~ 43 (66)
|.-++|+++...+.++=+=.-++-+++| .++++.|+++..-+
T Consensus 46 f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~ 88 (190)
T COG1971 46 FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEG 88 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888877777544445566555 46677788776644
No 104
>PRK11111 hypothetical protein; Provisional
Probab=53.52 E-value=18 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=12.2
Q ss_pred ccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 19 AERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 19 gE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
|=++.--++.||++...=-+-++.++
T Consensus 72 GIsl~afrIaGGiiL~~ial~Ml~g~ 97 (214)
T PRK11111 72 GISIDSFRIAGGILVVTIAMSMISGK 97 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33444456666655443333334444
No 105
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=53.09 E-value=7.4 Score=27.96 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=20.9
Q ss_pred chhhhhhhhhHHHHHhhhhhhccccc
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
+.++|.++||.++++-.|.+...+++
T Consensus 236 pv~lGNivGG~v~vgl~Y~~~~~~~~ 261 (265)
T COG2116 236 PVTLGNIVGGAVFVGLMYWYLYRKQN 261 (265)
T ss_pred HHHHhchhcchhhhhHHHHHhccccc
Confidence 67889999999999888887765543
No 106
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=52.88 E-value=21 Score=24.10 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=14.7
Q ss_pred hccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 18 FAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 18 LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
||=++.--++.||++...=-+=++.++.
T Consensus 65 fgIsl~af~IaGGiiL~~ia~~ml~~~~ 92 (203)
T PF01914_consen 65 FGISLPAFRIAGGIILFLIALEMLFGSP 92 (203)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555677777655444444444443
No 107
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=52.35 E-value=13 Score=27.19 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=20.7
Q ss_pred hhhhhhhhhHHHHHhhhhhhcccccchhh
Q 041924 22 LHLGSLIGAFLIVVGLYCVLWGKKKDRFA 50 (66)
Q Consensus 22 ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~ 50 (66)
+...-++-+++|++|+++--|.+.++++.
T Consensus 5 l~~~livig~i~i~~il~~~~~r~r~~~g 33 (293)
T PRK00269 5 LREWLIVIGIIVIAGILFDGWRRMRGGKG 33 (293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44555677788889999999976555443
No 108
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=52.26 E-value=9.7 Score=26.70 Aligned_cols=23 Identities=22% Similarity=0.717 Sum_probs=19.7
Q ss_pred hhhhhhhhhHHHHHhhhhhhccc
Q 041924 22 LHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 22 ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+|..|++...+++.|+.++.+.+
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~~ 259 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWAY 259 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999998887653
No 109
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=51.41 E-value=11 Score=26.66 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=20.1
Q ss_pred hhhhhhhhhHHHHHhhhhhhcccc
Q 041924 22 LHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 22 ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
+|.+|++...+++.|+.++.+.++
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~~ 269 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAYK 269 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999988776543
No 110
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=50.29 E-value=7.1 Score=22.11 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=16.2
Q ss_pred hhhhHHHHHhhhhhhccc
Q 041924 27 LIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 27 iiG~~lIi~Gi~l~~~~~ 44 (66)
++|.+|++.|+.+..|+-
T Consensus 2 iigi~Llv~GivLl~~G~ 19 (59)
T PF11381_consen 2 IIGIALLVGGIVLLYFGY 19 (59)
T ss_pred eeeehHHHHHHHHHHhhh
Confidence 678999999999999985
No 111
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=50.12 E-value=2.6 Score=31.06 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
....+++|+||+-.-++.++.|-++.+.|+.++..+.
T Consensus 116 p~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 116 PCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred HHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 3457899999999999999999999999999998875
No 112
>COG5346 Predicted membrane protein [Function unknown]
Probab=49.68 E-value=29 Score=22.78 Aligned_cols=40 Identities=8% Similarity=0.106 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924 6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
..+|++.|-|.++ +..-.+..+|.+.+++|.+++.+++.+
T Consensus 94 ~liFgi~LVvsi~-~~tla~~~~Gtv~alAlaFv~~~S~~q 133 (136)
T COG5346 94 LLIFGIFLVVSIF-PKTLASLAGGTVFALALAFVIGRSRDQ 133 (136)
T ss_pred HHHHHHHHHHHHH-HHHHHHHccchHHHHHHHHHHhhhhhc
Confidence 3455555544443 233346677888999999988876543
No 113
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=48.57 E-value=15 Score=22.74 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=21.3
Q ss_pred hhhhhhhhhHHHHHhhhhhhcccccchhh
Q 041924 22 LHLGSLIGAFLIVVGLYCVLWGKKKDRFA 50 (66)
Q Consensus 22 ltl~~iiG~~lIi~Gi~l~~~~~~~e~~~ 50 (66)
+++.+++|..+.+.=.|++.|.+|++.++
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 56778888877777778888877655544
No 114
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=48.42 E-value=46 Score=18.82 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
++.++..+++.+.+..++.++|+++.+...++..+.-
T Consensus 11 ~~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~ 47 (100)
T PF03899_consen 11 AVLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRV 47 (100)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666799999999999999999888888653
No 115
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=48.22 E-value=16 Score=25.95 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=18.8
Q ss_pred hhhhhhhHHHHHhhhhhhcccccc
Q 041924 24 LGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 24 l~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
+...+|.++++.|..++.+-|..+
T Consensus 116 ~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 116 WLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHHheeeecCCC
Confidence 456899999999999888766443
No 116
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=47.94 E-value=17 Score=20.10 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=14.8
Q ss_pred hhhhhhHHHHHhhhhhhccc
Q 041924 25 GSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~~~ 44 (66)
|-+.++++.+.|+++.+-+|
T Consensus 18 GLi~A~vlfi~Gi~iils~k 37 (50)
T PF02038_consen 18 GLIFAGVLFILGILIILSGK 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHHHHHHHHcCc
Confidence 45677888889988777654
No 117
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=47.83 E-value=16 Score=18.99 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=18.5
Q ss_pred ccchhhhhhhhhHH-HHHhhhhhhccccc
Q 041924 19 AERLHLGSLIGAFL-IVVGLYCVLWGKKK 46 (66)
Q Consensus 19 gE~ltl~~iiG~~l-Ii~Gi~l~~~~~~~ 46 (66)
-|++-.|.++|.+. .++|++...|.+.+
T Consensus 2 vEplL~GiVlGli~vtl~Glfv~Ay~QY~ 30 (37)
T PF02529_consen 2 VEPLLSGIVLGLIPVTLAGLFVAAYLQYR 30 (37)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhhhhHHHHhHHHHHHHHHHHHHHHHh
Confidence 36666677777754 46788888887644
No 118
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=45.81 E-value=22 Score=27.25 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924 7 LVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 7 ~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
.-.+++...++=|-++++..++|.+.|..|...+....+.
T Consensus 355 IPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 355 IPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred eeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 3356677777779999999999999999999999876543
No 119
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=45.61 E-value=18 Score=26.66 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=15.4
Q ss_pred hhhhhhHHHHHhhhhhhccccc
Q 041924 25 GSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
....|.+++..|+.++.+.+++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456888888998777765543
No 120
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=45.56 E-value=2.6 Score=30.76 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
-++|+++.++++++.+|..+.....-.+.++.|+.+..+
T Consensus 117 a~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 117 ALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred hhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 467999999999999999988766666666666665555
No 121
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=45.34 E-value=26 Score=20.69 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=6.5
Q ss_pred HHHHhhhhhhccc
Q 041924 32 LIVVGLYCVLWGK 44 (66)
Q Consensus 32 lIi~Gi~l~~~~~ 44 (66)
++++..|++++.+
T Consensus 11 v~~~i~yf~~~rp 23 (84)
T TIGR00739 11 LIFLIFYFLIIRP 23 (84)
T ss_pred HHHHHHHHheech
Confidence 3444555555543
No 122
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=45.13 E-value=16 Score=25.61 Aligned_cols=24 Identities=21% Similarity=0.573 Sum_probs=19.6
Q ss_pred chhhhhhhhhHHHHHhhhhhhccc
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
.+|.+|++...+++.|+.++.+.+
T Consensus 234 ~ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 234 WLRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999998776543
No 123
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=44.61 E-value=19 Score=18.71 Aligned_cols=27 Identities=30% Similarity=0.616 Sum_probs=18.5
Q ss_pred cchhhhhhhhhHH-HHHhhhhhhccccc
Q 041924 20 ERLHLGSLIGAFL-IVVGLYCVLWGKKK 46 (66)
Q Consensus 20 E~ltl~~iiG~~l-Ii~Gi~l~~~~~~~ 46 (66)
|++-.|.+.|.+. .++|++...|.+.+
T Consensus 3 EplL~GiVLGlipiTl~GlfvaAylQYr 30 (37)
T PRK00665 3 EPLLCGIVLGLIPVTLAGLFVAAWNQYK 30 (37)
T ss_pred chhhhhHHHHhHHHHHHHHHHHHHHHHh
Confidence 5666667777654 46788888887643
No 124
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=44.38 E-value=33 Score=25.73 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=26.2
Q ss_pred HHHHHHhccchhhhhhhhhHHHHHhhhhhh
Q 041924 12 LFSAIAFAERLHLGSLIGAFLIVVGLYCVL 41 (66)
Q Consensus 12 ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~ 41 (66)
+++.....|.+++-|+.|-++.+.|++++-
T Consensus 304 v~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 304 VFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667789999999999999999999876
No 125
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=44.26 E-value=22 Score=20.84 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=6.9
Q ss_pred hHHHHHhhhhhhccc
Q 041924 30 AFLIVVGLYCVLWGK 44 (66)
Q Consensus 30 ~~lIi~Gi~l~~~~~ 44 (66)
.+++++..|++.+.+
T Consensus 8 lv~~~~i~yf~~~rp 22 (82)
T PF02699_consen 8 LVIIFVIFYFLMIRP 22 (82)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhhheecH
Confidence 334444445555443
No 126
>PRK06281 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=44.05 E-value=49 Score=21.82 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhccchhhh-hhhhhHHHHHhhhhhhccc
Q 041924 4 PLQLVIVALFSAIAFAERLHLG-SLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~-~iiG~~lIi~Gi~l~~~~~ 44 (66)
.+.|++-..-.|++++=..++| -..|++++-+++.++....
T Consensus 11 ~l~p~i~lfgiyv~l~GH~sPGGGFqGGvi~asa~iL~~la~ 52 (154)
T PRK06281 11 PIAIFIMCLGIMTILGGHITPGGGFQGGAMIAAGFILCIVVY 52 (154)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHHHHc
Confidence 5677777777888899999994 6789999999988887654
No 127
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=41.67 E-value=62 Score=23.47 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHh-----ccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 3 SPLQLVIVALFSAIAF-----AERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 3 ~pL~~V~t~ils~l~L-----gE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
.|+.|+++.+.+.+++ .++.. +-+.+.++++.|+..+...++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~y~~~~~ 436 (445)
T PRK11357 390 FGLMTTLAIASSLILVASTFVWAPIP-GLICAVIVIATGLPAYAFWAK 436 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHhhhHHhheec
Confidence 3677777776665553 33322 223567777778766654443
No 128
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=40.96 E-value=34 Score=23.13 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHhccch-h-hhhhhh-hHHHHHhhhhhhcc
Q 041924 4 PLQLVIVALFSAIAFAERL-H-LGSLIG-AFLIVVGLYCVLWG 43 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~l-t-l~~iiG-~~lIi~Gi~l~~~~ 43 (66)
-+.|..+..++..+- +-+ . +.+++| .+++..|+++..-.
T Consensus 41 ~~~~~lg~~~G~~~~-~~i~~~~~~~ig~~iLi~iG~~mi~~~ 82 (206)
T TIGR02840 41 GLFIFISMLLGKFLA-KFLPPKVTEILGAFILIAIGIWIIYNA 82 (206)
T ss_pred HHHHHHHHHHHHHHH-HHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555553 333 2 344554 46677788877633
No 129
>PRK13499 rhamnose-proton symporter; Provisional
Probab=40.68 E-value=47 Score=24.57 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHhccchh------hhhhhhhHHHHHhhhhhhcc
Q 041924 4 PLQLVIVALFSAIAFAERLH------LGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~lt------l~~iiG~~lIi~Gi~l~~~~ 43 (66)
-+..+++.+.+. +|+|.-+ ..-++|.++++.|..+...+
T Consensus 298 ~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 298 SFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 345677777777 5999988 44588999999998887655
No 130
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=40.22 E-value=22 Score=23.18 Aligned_cols=15 Identities=40% Similarity=0.822 Sum_probs=6.8
Q ss_pred hhhhHHHHH-hhhhhh
Q 041924 27 LIGAFLIVV-GLYCVL 41 (66)
Q Consensus 27 iiG~~lIi~-Gi~l~~ 41 (66)
++|++++++ |+|.++
T Consensus 125 i~g~ll~i~~giy~~~ 140 (145)
T PF10661_consen 125 IGGILLAICGGIYVVL 140 (145)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 345544444 444443
No 131
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=40.22 E-value=37 Score=20.98 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=8.2
Q ss_pred hhhhhHHHHHhhhhhhccc
Q 041924 26 SLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~~~ 44 (66)
.++-.++++...|++++.+
T Consensus 20 ~ll~lvii~~i~yf~~~Rp 38 (106)
T PRK05585 20 SLLPLVVFFAIFYFLIIRP 38 (106)
T ss_pred HHHHHHHHHHHHHHHhccH
Confidence 3333334444445555543
No 132
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.67 E-value=63 Score=20.87 Aligned_cols=17 Identities=35% Similarity=0.850 Sum_probs=11.1
Q ss_pred hhhHHHHHhhhhhhccc
Q 041924 28 IGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 28 iG~~lIi~Gi~l~~~~~ 44 (66)
+|.+++..|++.+...+
T Consensus 48 lg~vL~~~g~~~~~~~~ 64 (191)
T PF04156_consen 48 LGVVLLSLGLLCLLSKR 64 (191)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 46677777777666544
No 133
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=39.44 E-value=25 Score=18.27 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=18.3
Q ss_pred cchhhhhhhhhHH-HHHhhhhhhccccc
Q 041924 20 ERLHLGSLIGAFL-IVVGLYCVLWGKKK 46 (66)
Q Consensus 20 E~ltl~~iiG~~l-Ii~Gi~l~~~~~~~ 46 (66)
|++-.|.++|.+. .++|++...|.+.+
T Consensus 3 E~lL~GiVLGlipvTl~GlfvaAylQYr 30 (37)
T CHL00008 3 EVLLFGIVLGLIPITLAGLFVTAYLQYR 30 (37)
T ss_pred chhhhhHHHHhHHHHHHHHHHHHHHHHh
Confidence 5566666777654 46788888887643
No 134
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=39.34 E-value=23 Score=20.56 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=17.8
Q ss_pred hhhhhhhHHHHHhhhhhhcccc
Q 041924 24 LGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 24 l~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
+.+++|.++++.|+.+..|...
T Consensus 1 ~~~~~G~~l~~~g~~l~~~~~~ 22 (106)
T PF04191_consen 1 WRFVLGLLLILAGIALAIWAFK 22 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999988643
No 135
>PF13994 PgaD: PgaD-like protein
Probab=38.60 E-value=48 Score=20.98 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=14.6
Q ss_pred hhhhhHHHHHhhhhhhcccc
Q 041924 26 SLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~~~~ 45 (66)
+.-..++++.+..+..|.+.
T Consensus 65 ~~y~~i~~~~a~~Li~Wa~y 84 (138)
T PF13994_consen 65 QIYLLIALVNAVILILWAKY 84 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455777888889999874
No 136
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.96 E-value=45 Score=18.92 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=9.4
Q ss_pred HHHHHhhhhhhcccccch
Q 041924 31 FLIVVGLYCVLWGKKKDR 48 (66)
Q Consensus 31 ~lIi~Gi~l~~~~~~~e~ 48 (66)
++.+++++.+.+.++|.+
T Consensus 20 l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 20 LFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHhcccchhh
Confidence 444555566665544433
No 137
>PRK12509 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=37.88 E-value=77 Score=20.45 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHhccchhhh-hhhhhHHHHHhhhhhhcccc
Q 041924 4 PLQLVIVALFSAIAFAERLHLG-SLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~-~iiG~~lIi~Gi~l~~~~~~ 45 (66)
.+.|+..+.-.|++++-..++| -.+|+++.-+++.+......
T Consensus 12 ~l~p~i~~~s~yl~~~GH~~PGGGF~gGli~a~a~~L~~la~g 54 (137)
T PRK12509 12 FLLPLLLLFSVFLLLRGHNEPGGGFIGGLVAAAAFALYLIANG 54 (137)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 3567777777888898888884 67888888888888776543
No 138
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=37.80 E-value=35 Score=19.95 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=11.3
Q ss_pred HHHHHhhhhhhcccccchhhh
Q 041924 31 FLIVVGLYCVLWGKKKDRFAV 51 (66)
Q Consensus 31 ~lIi~Gi~l~~~~~~~e~~~~ 51 (66)
++-+.+.+.-++.|.++++++
T Consensus 43 ~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 43 FFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred HHHHHHHHhHhhhhhhHhhhH
Confidence 334444444455676666654
No 139
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=37.33 E-value=22 Score=25.79 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=19.4
Q ss_pred hhhhhhHHHHHhhhhhhcccccc
Q 041924 25 GSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
+|++...+|+.|+.++.+.+++.
T Consensus 255 gqilSi~mIl~Gi~~~~~~~~k~ 277 (287)
T COG0682 255 GQILSIPMILLGLWLIIYLYKKA 277 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999876543
No 140
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=37.33 E-value=48 Score=21.33 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=23.1
Q ss_pred HHHHHHHHHhccchhh-------hhhhhhHHHHHhhhh
Q 041924 9 IVALFSAIAFAERLHL-------GSLIGAFLIVVGLYC 39 (66)
Q Consensus 9 ~t~ils~l~LgE~ltl-------~~iiG~~lIi~Gi~l 39 (66)
++++++..++||-+.- |+++|.++....+.+
T Consensus 11 ~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL~~ 48 (128)
T COG1380 11 LAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLLAL 48 (128)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHh
Confidence 4677888888887764 789999887665544
No 141
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=36.80 E-value=64 Score=18.43 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhccchhhhhhhhhHH-HHHhhhhhhcc
Q 041924 8 VIVALFSAIAFAERLHLGSLIGAFL-IVVGLYCVLWG 43 (66)
Q Consensus 8 V~t~ils~l~LgE~ltl~~iiG~~l-Ii~Gi~l~~~~ 43 (66)
|..+.+-+-++...+|-+.+=|.++ |+.|+.+..++
T Consensus 20 vG~~m~~S~~lS~~LT~GrihGSAIAI~lGLvLAy~G 56 (60)
T PF03818_consen 20 VGIIMWVSYWLSKKLTRGRIHGSAIAIVLGLVLAYIG 56 (60)
T ss_pred HHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHc
Confidence 3445555666789999999888765 56777776654
No 142
>PRK11469 hypothetical protein; Provisional
Probab=36.79 E-value=54 Score=21.96 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=24.5
Q ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhh-HHHHHhhhhhhcc
Q 041924 2 FSPLQLVIVALFSAIAFAERLHLGSLIGA-FLIVVGLYCVLWG 43 (66)
Q Consensus 2 F~pL~~V~t~ils~l~LgE~ltl~~iiG~-~lIi~Gi~l~~~~ 43 (66)
|+-+.|..+..++..+-+=...+.+++|. +++..|.++..-+
T Consensus 46 ~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~e~ 88 (188)
T PRK11469 46 VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEG 88 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777666666554333334455555 5666688777643
No 143
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=36.31 E-value=27 Score=20.40 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=19.0
Q ss_pred hhhhhhhhHHHHHhhhhhhcccccc
Q 041924 23 HLGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 23 tl~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
+..-.+|.++|+.|..++..+...+
T Consensus 8 yill~iG~~vIilGfilMsg~~s~d 32 (69)
T PF11297_consen 8 YILLAIGIAVIILGFILMSGGGSDD 32 (69)
T ss_pred HHHHHHHHHHHHHHHHheeCCCCCC
Confidence 3445689999999999998765443
No 144
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=35.34 E-value=84 Score=19.16 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccch
Q 041924 8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDR 48 (66)
Q Consensus 8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~ 48 (66)
+.+.+.+.+.++=..-+..++|.++-+.|..+..|-.+++.
T Consensus 28 ~~g~la~~l~~g~~~~~a~~~gl~lw~v~h~~l~~mAK~DP 68 (94)
T PRK13823 28 FSGLLAGILIFVAQTWRAALFGIALWFGALFALRLMAKADP 68 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 33444455556665555667888888888888887654443
No 145
>COG2034 Predicted membrane protein [Function unknown]
Probab=35.14 E-value=36 Score=20.68 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=18.8
Q ss_pred hhhhhHHHHHhhhhhhcccccchh
Q 041924 26 SLIGAFLIVVGLYCVLWGKKKDRF 49 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~~~~~e~~ 49 (66)
..+|-.++..|+.+..+++.++..
T Consensus 15 i~iGf~LifLGi~l~~~~~~~~~~ 38 (85)
T COG2034 15 IFIGFLLIFLGIVLPAFSPFAESG 38 (85)
T ss_pred HHHHHHHHHHHHHHHhcCCccccC
Confidence 467889999999999987765554
No 146
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=34.83 E-value=19 Score=22.10 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=12.1
Q ss_pred hhhhhHHHHHhhhhhhccc
Q 041924 26 SLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~~~ 44 (66)
..++.++++.|++.++|..
T Consensus 5 ~~~~l~~lvl~L~~~l~~q 23 (110)
T PF10828_consen 5 IYIALAVLVLGLGGWLWYQ 23 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777764
No 147
>PRK08965 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=34.64 E-value=90 Score=20.27 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
.....+-|++|....++..++.|+++...+..+..
T Consensus 12 ~~~l~~~W~lL~g~~~~~~l~~G~~~~~~v~~~~~ 46 (162)
T PRK08965 12 SLWLALVWLLLNGSFSLGNLLLGLLLGLLIPLLLA 46 (162)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34456778899999999999999888766665554
No 148
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=34.50 E-value=95 Score=22.93 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhh
Q 041924 8 VIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVL 41 (66)
Q Consensus 8 V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~ 41 (66)
.+..++-|++|+..++++.++-|+++-..+.+++
T Consensus 173 ~~ll~~~Wlllsg~~s~~~l~~G~v~~~~v~~~~ 206 (357)
T PRK12652 173 FGASFGFYLLLGDPLYWFDLLTGAVTALIVAVLL 206 (357)
T ss_pred HHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHh
Confidence 3556677889999999999988887765555444
No 149
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.31 E-value=46 Score=24.59 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=36.9
Q ss_pred CCchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 1 MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 1 ~F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+|.+++|+++++...+++|-..+...+.--..+++|........
T Consensus 108 v~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d 151 (314)
T KOG1444|consen 108 VFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD 151 (314)
T ss_pred HHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc
Confidence 36789999999999999998888888888888888877766544
No 150
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=34.17 E-value=33 Score=25.05 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=38.1
Q ss_pred CCchHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924 1 MFSPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 1 ~F~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
+|.+++.+..+-.-.+++|-.++--....-.+++..-+...|+..+
T Consensus 99 iFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q 144 (309)
T COG5070 99 IFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ 144 (309)
T ss_pred HhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhh
Confidence 3778888888888889999999888888888888888888887653
No 151
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=33.85 E-value=63 Score=23.50 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=10.7
Q ss_pred chHHHHHHHHHHHHHhc
Q 041924 3 SPLQLVIVALFSAIAFA 19 (66)
Q Consensus 3 ~pL~~V~t~ils~l~Lg 19 (66)
.|..++++.++..+.+.
T Consensus 386 ~~~~~~~~~~~~~~~~~ 402 (435)
T PRK10435 386 SLICSVLGCVFCFIALM 402 (435)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666666665
No 152
>PF01790 LGT: Prolipoprotein diacylglyceryl transferase; InterPro: IPR001640 Prolipoprotein diacylglyceryl transferase [] is the bacterial enzyme catalysing the first step in lipoprotein biogenesis. It transfers the n-acyl diglyceride group onto what will become the N-terminal cysteine of membrane lipoproteins. This enzyme is an integral membrane protein.; GO: 0016757 transferase activity, transferring glycosyl groups, 0009249 protein lipoylation, 0042158 lipoprotein biosynthetic process, 0016020 membrane
Probab=33.81 E-value=36 Score=23.48 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=18.8
Q ss_pred hhhhhhhhhHHHHHhhhhhhccc
Q 041924 22 LHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 22 ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+|..|+++.++++.|+.++.+.|
T Consensus 234 ls~~Q~~sl~~i~~g~~~l~~~~ 256 (256)
T PF01790_consen 234 LSTAQWLSLALILAGLILLIYLK 256 (256)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhC
Confidence 77888999999999988887643
No 153
>PRK01741 cell division protein ZipA; Provisional
Probab=33.59 E-value=32 Score=25.62 Aligned_cols=27 Identities=11% Similarity=0.393 Sum_probs=19.1
Q ss_pred hhhhhhhHHHHHhhhhhhcccccchhh
Q 041924 24 LGSLIGAFLIVVGLYCVLWGKKKDRFA 50 (66)
Q Consensus 24 l~~iiG~~lIi~Gi~l~~~~~~~e~~~ 50 (66)
+..|+|++.+++=+-.-+|+.|+|+.+
T Consensus 6 iliILg~lal~~Lv~hgiWsnRrEKSq 32 (332)
T PRK01741 6 ILIILGILALVALVAHGIWSNRREKSQ 32 (332)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 345677777777667778988877754
No 154
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.15 E-value=1.3e+02 Score=19.29 Aligned_cols=11 Identities=9% Similarity=0.057 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 041924 7 LVIVALFSAIA 17 (66)
Q Consensus 7 ~V~t~ils~l~ 17 (66)
+++++.++|++
T Consensus 56 ilVGa~iG~ll 66 (116)
T COG5336 56 ILVGAGIGWLL 66 (116)
T ss_pred HHHHHHHHHHH
Confidence 45566777765
No 155
>COG1288 Predicted membrane protein [Function unknown]
Probab=32.55 E-value=36 Score=26.55 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
||.+.+++.=.|=+=+.|-+.++-+.=.+..+.++....|.-
T Consensus 197 NPF~~~IAq~iAGip~~sG~~~Riv~~v~~~~~~i~y~~~Ya 238 (481)
T COG1288 197 NPFATVIAQNIAGIPFLSGMGLRIVVWVVFTLISIIYVYWYA 238 (481)
T ss_pred CchHHHHHhhhcCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 577777776666666667777766665666667776666653
No 156
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=32.55 E-value=60 Score=20.34 Aligned_cols=11 Identities=27% Similarity=0.298 Sum_probs=5.1
Q ss_pred HHHHhhhhhhc
Q 041924 32 LIVVGLYCVLW 42 (66)
Q Consensus 32 lIi~Gi~l~~~ 42 (66)
++++.+|+++.
T Consensus 12 ~i~~i~yF~~i 22 (109)
T PRK05886 12 LIMGGFMYFAS 22 (109)
T ss_pred HHHHHHHHHHc
Confidence 34444455544
No 157
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=32.01 E-value=37 Score=24.54 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=14.4
Q ss_pred hhhhhHHHHHhhhhhhcccccchh
Q 041924 26 SLIGAFLIVVGLYCVLWGKKKDRF 49 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~~~~~e~~ 49 (66)
.++|++.|++=++.=+|..|+|+.
T Consensus 7 IIvGaiaI~aLl~hGlwt~Rke~s 30 (284)
T TIGR02205 7 IIVGILAIAALLFHGLWTSRKEKS 30 (284)
T ss_pred HHHHHHHHHHHHHccccccccccc
Confidence 456666666555555676666554
No 158
>PRK09579 multidrug efflux protein; Reviewed
Probab=31.71 E-value=81 Score=26.18 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=21.9
Q ss_pred HHHHHHHHHhccchhhhhhhhhHHHHHhhhh
Q 041924 9 IVALFSAIAFAERLHLGSLIGAFLIVVGLYC 39 (66)
Q Consensus 9 ~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l 39 (66)
++++++.++.+.+++..+++| +++++|+..
T Consensus 883 ~G~~~~L~i~~~~l~~~s~~G-~i~L~GivV 912 (1017)
T PRK09579 883 CGALIPLFLGVSSMNIYTQVG-LVTLIGLIS 912 (1017)
T ss_pred HHHHHHHHHhCCCccHHHHHH-HHHHHHHHH
Confidence 346777788899999999887 445556543
No 159
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=31.56 E-value=42 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=17.7
Q ss_pred chhhhhhhhhHHHHHhhhhhhc
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
+.++|.++|+.+++..+|.++.
T Consensus 216 pv~lGN~iGG~~~v~l~~~~~~ 237 (239)
T TIGR00790 216 PVTLGNIIGGAVFVGLIYWYIY 237 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4577889999999988887764
No 160
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=31.26 E-value=67 Score=24.34 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=21.6
Q ss_pred HHHHHHHhccchh--------------hhhhhhhHHHHHhhhhhhc
Q 041924 11 ALFSAIAFAERLH--------------LGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 11 ~ils~l~LgE~lt--------------l~~iiG~~lIi~Gi~l~~~ 42 (66)
++.+.+.||+++. ++.++||++-+...+++..
T Consensus 312 aVs~Afv~GdhLGFta~~~p~mI~p~iigKL~~Gi~Ai~~A~~~~~ 357 (372)
T PRK15086 312 AVSAAFVLGDHLGFTAGVQPTMIFPMIVGKLIGGITAIGVAILLSV 357 (372)
T ss_pred hhhHHHHhcccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566677787764 4567788877776666663
No 161
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=31.25 E-value=56 Score=20.76 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 7 LVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 7 ~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
.+.+.+..++.=+-.++..-++|+++.++|...++++.+
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 344555566666667777788888888888777776654
No 162
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=31.21 E-value=97 Score=17.02 Aligned_cols=23 Identities=30% Similarity=0.713 Sum_probs=19.0
Q ss_pred hhhhhhhhhHHHHHhhhhhhccc
Q 041924 22 LHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 22 ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
-.....+|.+++..|+....++-
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~ 64 (73)
T PF02656_consen 42 RRVSKVLGLLLIVLGLLTLIYGI 64 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999888764
No 163
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=31.11 E-value=65 Score=26.41 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.0
Q ss_pred HHHHHHHHHhccchhhhhhhhhHHH
Q 041924 9 IVALFSAIAFAERLHLGSLIGAFLI 33 (66)
Q Consensus 9 ~t~ils~l~LgE~ltl~~iiG~~lI 33 (66)
++++++.+++|.++++.+++|.+..
T Consensus 901 ~G~~~~l~i~g~~l~~~s~iG~i~L 925 (1021)
T PF00873_consen 901 IGVLLGLFITGQPLSFMSLIGIIAL 925 (1021)
T ss_dssp HHHHHHHHHTTBEBSHHHHHHHHHH
T ss_pred HHHHHHHhhccccccccceehHHHH
Confidence 4568899999999999999987544
No 164
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=31.11 E-value=57 Score=16.98 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=12.2
Q ss_pred hHHHHHhhhhhhcccccchhhh
Q 041924 30 AFLIVVGLYCVLWGKKKDRFAV 51 (66)
Q Consensus 30 ~~lIi~Gi~l~~~~~~~e~~~~ 51 (66)
.++++.++++..+.+++...++
T Consensus 15 t~l~l~~li~~~~~~~r~~~~~ 36 (45)
T TIGR03141 15 TALVLAGLILWSLLDRRRLLRE 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666655444443
No 165
>PRK10591 hypothetical protein; Provisional
Probab=31.06 E-value=72 Score=19.65 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=20.2
Q ss_pred HHHHHHHhccchhhhhhhh-----hHHHHHhhhhhh
Q 041924 11 ALFSAIAFAERLHLGSLIG-----AFLIVVGLYCVL 41 (66)
Q Consensus 11 ~ils~l~LgE~ltl~~iiG-----~~lIi~Gi~l~~ 41 (66)
.+++++-+++-+++...+| .++|+.|+.+++
T Consensus 22 Lv~a~Lsindyl~lP~~l~~~~aai~mif~Gi~lmi 57 (92)
T PRK10591 22 LVVAYLSLNDYLSLPEPLSTPTAAILMIFLGVLLML 57 (92)
T ss_pred HHHHHHHHcccccCCccccCchHHHHHHHHHHHHhh
Confidence 5678888899777764443 355666665543
No 166
>PF04039 MnhB: Domain related to MnhB subunit of Na+/H+ antiporter; InterPro: IPR007182 This domain is found in a possible subunit of the Na+/H+ antiporter [, ] as well as in the bacterial NADH dehydrogenase subunit. Usually four transmembrane regions are found in this domain.
Probab=31.04 E-value=1.2e+02 Score=18.45 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHhccchhhh-hhhhhHHHHHhhhhhhcccc
Q 041924 4 PLQLVIVALFSAIAFAERLHLG-SLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~-~iiG~~lIi~Gi~l~~~~~~ 45 (66)
.+.|+.-..-.|++++...++| -..|+++.-++..+......
T Consensus 10 ~l~p~~~~~~~yl~~~Gh~sPGGGFqgG~ila~a~il~~l~~g 52 (124)
T PF04039_consen 10 LLFPFILLFGLYLLLHGHLSPGGGFQGGVILAAAFILLYLAFG 52 (124)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHhCC
Confidence 4678888888899999988884 56677777777777665543
No 167
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=30.82 E-value=47 Score=24.94 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
.-+++|..++|.+|==|..++.-..=..+|.+|++++.+...
T Consensus 118 SSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT 159 (349)
T KOG1443|consen 118 SSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST 159 (349)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence 457889999999999999999998888999999999988543
No 168
>PF10942 DUF2619: Protein of unknown function (DUF2619); InterPro: IPR020390 This entry contains membrane proteins with no known function.
Probab=30.76 E-value=79 Score=18.53 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhh
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYC 39 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l 39 (66)
|...+.++.++.+=+.+++++.. .++|.+|+.+
T Consensus 36 P~ili~tt~iGL~gla~kls~~k---l~~I~~GV~l 68 (69)
T PF10942_consen 36 PTILILTTTIGLAGLADKLSPSK---LLWIFAGVAL 68 (69)
T ss_pred cHHHHHHHHHHHHHHhcccCHHH---HHHHHhccee
Confidence 77788889999999999999875 4566666643
No 169
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.66 E-value=48 Score=17.92 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 041924 7 LVIVALFSAIA 17 (66)
Q Consensus 7 ~V~t~ils~l~ 17 (66)
|+...++..++
T Consensus 19 pl~l~il~~f~ 29 (68)
T PF06305_consen 19 PLGLLILIAFL 29 (68)
T ss_pred hHHHHHHHHHH
Confidence 33333444333
No 170
>PRK12574 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=30.65 E-value=1.1e+02 Score=19.75 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHhccchhh-hhhhhhHHHHHhhhhhhcccc
Q 041924 4 PLQLVIVALFSAIAFAERLHL-GSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl-~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
.+.|++-..-.|++++-..++ |-.+|+++.-+++.+......
T Consensus 14 ~l~p~i~l~s~ylll~GH~~PGGGF~gGli~a~a~iL~~la~G 56 (141)
T PRK12574 14 IVVFILLTFGFYLFLAGHNNPGGGFIGGLIFSSAFILMFLAFG 56 (141)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 355666677778888888888 467888888888887776543
No 171
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.63 E-value=86 Score=21.50 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=17.0
Q ss_pred HHHHHHHHHhccchhhhhhhhhH-HHHHhhhhhhcc
Q 041924 9 IVALFSAIAFAERLHLGSLIGAF-LIVVGLYCVLWG 43 (66)
Q Consensus 9 ~t~ils~l~LgE~ltl~~iiG~~-lIi~Gi~l~~~~ 43 (66)
+..++-|++|----+..+ .|.+ +++++++...|.
T Consensus 107 ~v~vllW~vL~~ia~~l~-fGlvff~lSlf~~iy~n 141 (181)
T KOG3249|consen 107 WVIVLLWFVLAPIAHRLD-FGLVFFLLSLFSIIYLN 141 (181)
T ss_pred HHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHheec
Confidence 345555555443334444 4544 445555555555
No 172
>PRK08386 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=30.58 E-value=1.2e+02 Score=19.71 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhccchhh-hhhhhhHHHHHhhhhhhccc
Q 041924 4 PLQLVIVALFSAIAFAERLHL-GSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl-~~iiG~~lIi~Gi~l~~~~~ 44 (66)
.+.|+....-.|++++=..++ |-..|+++.-+++.+.....
T Consensus 13 ~l~p~i~l~s~yl~l~GH~~PGGGF~gG~i~a~a~iL~~la~ 54 (151)
T PRK08386 13 AIIPLIGIFGAYIVLHGHLTPGGGFQGGATIAGGGALFLVAF 54 (151)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHC
Confidence 466777777788888888888 46778888888877776554
No 173
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=30.01 E-value=45 Score=23.50 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=15.3
Q ss_pred hhhhhhhhhHHHHHhhhhhhccc
Q 041924 22 LHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 22 ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+.+...--|.+++.|+++..+..
T Consensus 183 ~~l~~lppGaF~~lg~l~a~~~~ 205 (231)
T PRK12405 183 FLLAILPPGAFIGLGLLLALKNL 205 (231)
T ss_pred chhHhcCCHHHHHHHHHHHHHHH
Confidence 33444556778888888887653
No 174
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=29.95 E-value=46 Score=28.06 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=15.7
Q ss_pred hhhhhhhHHHHHhhhhhhcc
Q 041924 24 LGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 24 l~~iiG~~lIi~Gi~l~~~~ 43 (66)
+.+++||+|+++=+.+++|.
T Consensus 982 i~svl~GLLlL~llv~~LwK 1001 (1030)
T KOG3637|consen 982 ILSVLGGLLLLALLVLLLWK 1001 (1030)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888884
No 175
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=29.93 E-value=48 Score=19.94 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=18.5
Q ss_pred chhhhhhhhhHHHHHhhhhhhccc
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
.+++..++|.+++++|+.++....
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~ 27 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRF 27 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHH
Confidence 356678889999999988887543
No 176
>PRK14782 lipoprotein signal peptidase; Provisional
Probab=29.42 E-value=1.2e+02 Score=19.76 Aligned_cols=30 Identities=17% Similarity=-0.033 Sum_probs=17.4
Q ss_pred HHHHHhccchhhhhhhhhHHHHHhhhhhhc
Q 041924 13 FSAIAFAERLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 13 ls~l~LgE~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
+.+++...+-+....+|..++++|.+--+.
T Consensus 78 i~~~~~~~~~~~~~~~~l~lI~gGalGNli 107 (157)
T PRK14782 78 VVIWVRRSGGSRWMLISAGLLIGGALANVL 107 (157)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHhhHH
Confidence 333344444445556777888888765443
No 177
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=28.73 E-value=74 Score=19.54 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=13.4
Q ss_pred hhhhhhhHHHHHhhhhhhccccc
Q 041924 24 LGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 24 l~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
+..++=-+++++..|++++++.+
T Consensus 9 ~~~ll~~vl~~~ifyFli~RPQr 31 (97)
T COG1862 9 LVLLLPLVLIFAIFYFLIIRPQR 31 (97)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHH
Confidence 33445556666666776766433
No 178
>PRK08383 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=28.71 E-value=1.8e+02 Score=19.33 Aligned_cols=38 Identities=8% Similarity=0.040 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhccc-----hhhhhhhhhHHHHHhhhhhhc
Q 041924 5 LQLVIVALFSAIAFAER-----LHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~-----ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
+...+...+-|++|... +++++++-|+++-..+...+.
T Consensus 4 ~~~~~~l~~~WllLsg~~~~~~~s~~~l~~Gll~~~~v~~l~~ 46 (168)
T PRK08383 4 ITAFIWSYVLWLVLTAGSKGLLWSPEELIAGLIFAAIVGYATR 46 (168)
T ss_pred HHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHh
Confidence 34445567788899887 888888888777555554443
No 179
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=28.21 E-value=66 Score=20.74 Aligned_cols=39 Identities=18% Similarity=0.049 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
-++..--+.-|-.+|.+.+..++-+++++++.+++...+
T Consensus 23 ~~vl~k~~~~~t~~EKvly~~~~va~L~vai~ii~~q~~ 61 (120)
T COG4839 23 KQVLRKKRKKFTKVEKVLYTTLAVAALVVAISIISVQTK 61 (120)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788889999999999999999888887655
No 180
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=27.93 E-value=1.2e+02 Score=19.67 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 041924 11 ALFSAIA 17 (66)
Q Consensus 11 ~ils~l~ 17 (66)
++++..+
T Consensus 93 a~l~~~~ 99 (154)
T PRK10862 93 AALFQLL 99 (154)
T ss_pred HHHHHHH
Confidence 3444433
No 181
>PRK11387 S-methylmethionine transporter; Provisional
Probab=27.86 E-value=1.6e+02 Score=21.72 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHHHhc-cch----hhhhhhhhHHHHHhhhhhhcccc
Q 041924 3 SPLQLVIVALFSAIAFA-ERL----HLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 3 ~pL~~V~t~ils~l~Lg-E~l----tl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
.|+.|+++.+...+.+- -.. .....+|..+++.|+..+.+.++
T Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T PRK11387 410 YPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQR 457 (471)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667766654433331 111 12345677777777666655443
No 182
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=27.78 E-value=57 Score=20.01 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=16.9
Q ss_pred HHhccchhhhhhhhhHHHHHhhhh
Q 041924 16 IAFAERLHLGSLIGAFLIVVGLYC 39 (66)
Q Consensus 16 l~LgE~ltl~~iiG~~lIi~Gi~l 39 (66)
+.=+|++|+..++|-.+.-+++-.
T Consensus 24 L~s~Epit~RL~iGR~ilGs~~S~ 47 (89)
T PF04550_consen 24 LASNEPITLRLFIGRVILGSAVSV 47 (89)
T ss_pred HccCCCCchhHHhHHHHHhhHHHH
Confidence 344799999998887766554443
No 183
>PRK04335 cell division protein ZipA; Provisional
Probab=27.65 E-value=47 Score=24.46 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=19.2
Q ss_pred hhhhhhHHHHHhhhhhhcccccchhhh
Q 041924 25 GSLIGAFLIVVGLYCVLWGKKKDRFAV 51 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~~~~~e~~~~ 51 (66)
-.++|++.|++=++.=+|..|||+..+
T Consensus 8 LiivGAlAI~ALL~HGlWtsrKe~~~~ 34 (313)
T PRK04335 8 LIVVGALAIAALLFHGLWTSKKEGKSK 34 (313)
T ss_pred HHHHHHHHHHHHHHhccccccccccch
Confidence 356788888777777788877766554
No 184
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=27.64 E-value=32 Score=25.60 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=10.9
Q ss_pred hhHHHHHhhhhhhcccc
Q 041924 29 GAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 29 G~~lIi~Gi~l~~~~~~ 45 (66)
+.++++.|+|++++.++
T Consensus 331 ~l~li~Ggl~v~~~r~r 347 (350)
T PF15065_consen 331 LLLLILGGLYVCLRRRR 347 (350)
T ss_pred HHHHHHhhheEEEeccc
Confidence 45677777777776544
No 185
>PRK12508 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=27.43 E-value=1.6e+02 Score=18.98 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHhccchhh-hhhhhhHHHHHhhhhhhccc
Q 041924 4 PLQLVIVALFSAIAFAERLHL-GSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl-~~iiG~~lIi~Gi~l~~~~~ 44 (66)
.+.|+....-.|++++=..++ |-..|+++.-++..+.....
T Consensus 13 ~l~P~i~l~s~yll~~GH~~PGGGFqgG~i~a~a~iL~~la~ 54 (139)
T PRK12508 13 LMIPVIILFGLYVQFHGDYGPGGGFQAGVIVASAIILYSMLF 54 (139)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHC
Confidence 456777777778888877777 46778888877777776554
No 186
>PRK10527 hypothetical protein; Provisional
Probab=27.13 E-value=1.3e+02 Score=19.11 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=8.4
Q ss_pred HhccchhhhhhhhhHHH
Q 041924 17 AFAERLHLGSLIGAFLI 33 (66)
Q Consensus 17 ~LgE~ltl~~iiG~~lI 33 (66)
++.+++.+.-.++.+.+
T Consensus 90 ~~~~~~~~~~~l~~~~~ 106 (125)
T PRK10527 90 WLVQMPWVRILLLVILA 106 (125)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 45566655444443333
No 187
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=26.61 E-value=1.5e+02 Score=19.84 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcc-chhhhhhhhhHHHHHhhhhhhc
Q 041924 5 LQLVIVALFSAIAFAE-RLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 5 L~~V~t~ils~l~LgE-~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
++-+.....+.+++++ .+..+.++++.+-++.+.+...
T Consensus 86 ~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i~ 124 (161)
T COG3476 86 LQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTII 124 (161)
T ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHH
Confidence 5667788889999998 8888998888877766665553
No 188
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=26.06 E-value=59 Score=16.91 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=12.5
Q ss_pred hhhhHHHHHhhhhhhcccccch
Q 041924 27 LIGAFLIVVGLYCVLWGKKKDR 48 (66)
Q Consensus 27 iiG~~lIi~Gi~l~~~~~~~e~ 48 (66)
..-.++++.+.++.++.+++.-
T Consensus 11 Yg~t~~~l~~l~~~~~~~~r~~ 32 (46)
T PF04995_consen 11 YGVTALVLAGLIVWSLRRRRRL 32 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666654433
No 189
>TIGR00304 conserved hypothetical protein TIGR00304. The member of this family from Pyrococcus horikoshii scores only 13.91 bits, largely because it is at least 15 residues shorter than other members of this family of small proteins and is penalized for not matching to the N-terminal section of the model. Cutoff scores are set so this hit is between noise and trusted cutoffs.
Probab=26.03 E-value=42 Score=20.01 Aligned_cols=17 Identities=35% Similarity=0.745 Sum_probs=10.8
Q ss_pred hhhHHHHHhhhhhhccc
Q 041924 28 IGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 28 iG~~lIi~Gi~l~~~~~ 44 (66)
.|..+++.|+.++.++.
T Consensus 9 ~Gi~LIfiGfilv~lG~ 25 (77)
T TIGR00304 9 LGIILIVIGFLLTFLGG 25 (77)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46666777777666553
No 190
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=25.77 E-value=58 Score=20.60 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=16.2
Q ss_pred hhhhhHHHHHhhhhhhcccccch
Q 041924 26 SLIGAFLIVVGLYCVLWGKKKDR 48 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~~~~~e~ 48 (66)
++.|++++...++.+.|.-++++
T Consensus 96 ~l~g~~ii~~ti~~f~~~f~~~d 118 (120)
T PF04133_consen 96 SLAGGVIIYATIIGFFWFFGEED 118 (120)
T ss_pred HHHhhHHHHHHHHHHHhhccCcC
Confidence 56777888888887777655444
No 191
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=25.65 E-value=45 Score=23.21 Aligned_cols=21 Identities=38% Similarity=0.516 Sum_probs=17.3
Q ss_pred chhhhhhhhhHHHHHhhhhhh
Q 041924 21 RLHLGSLIGAFLIVVGLYCVL 41 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~ 41 (66)
+.++|.++||.++++..|.+.
T Consensus 229 pvtlGN~iGG~~~v~~~~~~~ 249 (250)
T PF01226_consen 229 PVTLGNIIGGALFVGLLYWYQ 249 (250)
T ss_dssp HHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 567899999999988887654
No 192
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.38 E-value=65 Score=23.84 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924 9 IVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 9 ~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
.+.+-..++.+.+.++..++|..+-+.|-.++...+.++
T Consensus 267 ~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~ 305 (314)
T KOG1444|consen 267 LTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRK 305 (314)
T ss_pred HHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhh
Confidence 345666778889999999999999998888888776443
No 193
>PRK09577 multidrug efflux protein; Reviewed
Probab=25.19 E-value=1.1e+02 Score=25.53 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=23.0
Q ss_pred HHHHHHHHhccchhhhhhhhhHHHHHhhhh
Q 041924 10 VALFSAIAFAERLHLGSLIGAFLIVVGLYC 39 (66)
Q Consensus 10 t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l 39 (66)
+++++.+++|.+++..+++|.+ +++|+..
T Consensus 905 G~~~~l~l~g~~l~~~s~~G~i-~L~GivV 933 (1032)
T PRK09577 905 GAVLGVTLRGMPNDIYFKVGLI-ATIGLSA 933 (1032)
T ss_pred HHHHHHHHhCCCccHHHHHHHH-HHHHHHH
Confidence 4678888999999999998877 5666643
No 194
>COG4194 Predicted membrane protein [General function prediction only]
Probab=25.19 E-value=1.3e+02 Score=22.74 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=22.9
Q ss_pred HHHHhccchhhhhhhhhHHHHHhhhhhhcccccch
Q 041924 14 SAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKDR 48 (66)
Q Consensus 14 s~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e~ 48 (66)
.+-+..+.+...-+++..+++++.+.....-.++.
T Consensus 242 ~~~lnp~~~~~~vi~~iili~~s~l~l~l~iGq~g 276 (350)
T COG4194 242 LLRLNPSGLITHVIIAIILIAVSTLALALKIGQGG 276 (350)
T ss_pred HhhcCCcccchhhHHHHHHHHHHHHHHHHHhccCc
Confidence 34445666777778888888888777665433333
No 195
>PRK10746 putative transport protein YifK; Provisional
Probab=25.02 E-value=1.7e+02 Score=21.61 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHH-----hccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 3 SPLQLVIVALFSAIA-----FAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 3 ~pL~~V~t~ils~l~-----LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
.|..+.++.++..++ +..........|..+++.++..+...|
T Consensus 403 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 449 (461)
T PRK10746 403 FPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFG 449 (461)
T ss_pred ccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554443333 222222345555555555555554433
No 196
>PRK08387 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.92 E-value=1.8e+02 Score=18.53 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHhccchhh-hhhhhhHHHHHhhhhhhccc
Q 041924 4 PLQLVIVALFSAIAFAERLHL-GSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl-~~iiG~~lIi~Gi~l~~~~~ 44 (66)
.+.|++-..-.|++++=..++ |-..|+++.-+++.+.....
T Consensus 11 ~l~p~i~l~s~yl~l~GH~~PGGGF~gGli~a~a~~L~~la~ 52 (131)
T PRK08387 11 LVAPFLVTYAAYLMLYGHLSPGGGFQAGVILAVAVILLITSH 52 (131)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHc
Confidence 355666666677888888887 46788888888888776554
No 197
>PHA03265 envelope glycoprotein D; Provisional
Probab=24.90 E-value=34 Score=26.08 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=10.6
Q ss_pred hHHHHHhhhhhhcccccchhh
Q 041924 30 AFLIVVGLYCVLWGKKKDRFA 50 (66)
Q Consensus 30 ~~lIi~Gi~l~~~~~~~e~~~ 50 (66)
|++++.-++.++|.++++.++
T Consensus 360 glv~vg~il~~~~rr~k~~~k 380 (402)
T PHA03265 360 GLVLVGVILYVCLRRKKELKK 380 (402)
T ss_pred hhhhhhHHHHHHhhhhhhhhh
Confidence 344444445555765555443
No 198
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=24.78 E-value=56 Score=19.32 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=10.6
Q ss_pred HHHHhhhhhhcccccchhhhhh
Q 041924 32 LIVVGLYCVLWGKKKDRFAVDE 53 (66)
Q Consensus 32 lIi~Gi~l~~~~~~~e~~~~~~ 53 (66)
++++|++...+..++.++..+|
T Consensus 21 ~~~~~~wi~~Ra~~~~DKT~~e 42 (72)
T PF13268_consen 21 LLVSGIWILWRALRKKDKTAKE 42 (72)
T ss_pred HHHHHHHHHHHHHHcCCCcHHH
Confidence 3445555555544554444333
No 199
>PRK10489 enterobactin exporter EntS; Provisional
Probab=24.68 E-value=1.9e+02 Score=20.22 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=8.8
Q ss_pred hhhhHHHHHhhhhhhccc
Q 041924 27 LIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 27 iiG~~lIi~Gi~l~~~~~ 44 (66)
+.|++..+.++......+
T Consensus 383 ~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 383 ASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 345555555555544433
No 200
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=24.49 E-value=43 Score=22.41 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=7.2
Q ss_pred hhhHHHHHhhhhhhc
Q 041924 28 IGAFLIVVGLYCVLW 42 (66)
Q Consensus 28 iG~~lIi~Gi~l~~~ 42 (66)
+|+.++++.+.++.|
T Consensus 58 VGg~ill~il~lvf~ 72 (154)
T PF04478_consen 58 VGGPILLGILALVFI 72 (154)
T ss_pred ccHHHHHHHHHhhee
Confidence 455555544444443
No 201
>PRK12567 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.38 E-value=1.6e+02 Score=20.47 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHhccchhhh-hhhhhHHHHHhhhhhhccc
Q 041924 4 PLQLVIVALFSAIAFAERLHLG-SLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~-~iiG~~lIi~Gi~l~~~~~ 44 (66)
.+.|+...+-.|++++=..++| -..|+++.-+++.+.....
T Consensus 98 ~l~p~i~l~~~yl~~~Gh~~PGGGFqgG~i~a~a~iL~~la~ 139 (218)
T PRK12567 98 LLAPFILLFGIYLAIHGHLTPGGGFAAGVAGGTAILLLALSS 139 (218)
T ss_pred HHhHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHc
Confidence 4567777777888888888884 5677777777776666544
No 202
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=24.28 E-value=1.3e+02 Score=22.34 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924 5 LQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
..|+-+.+++.++..-|+.....+|..+..+|.+...|.-.+
T Consensus 18 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (425)
T TIGR00947 18 LEPLAGGLLALLLVLAPFVSTTGLGLVLAACGALWLLLTLVD 59 (425)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHcc
Confidence 467888999999999999999999999999999998886543
No 203
>PRK12573 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.28 E-value=1.8e+02 Score=18.78 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHhccchhh-hhhhhhHHHHHhhhhhhccc
Q 041924 4 PLQLVIVALFSAIAFAERLHL-GSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl-~~iiG~~lIi~Gi~l~~~~~ 44 (66)
.+.|+.-+.-.|++++=..++ |-.+|+++.-+++.+.....
T Consensus 14 ~l~p~i~l~s~yv~l~GH~~PGGGF~gGli~a~a~iL~~la~ 55 (140)
T PRK12573 14 IVTFIILLFSVFLFLAGHNEPGGGFIGGLITASALVILLLAF 55 (140)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHHHHc
Confidence 356777777778888888888 46788888888888776554
No 204
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=24.26 E-value=98 Score=23.19 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcc-------chhhhhhhhhHHHHHhhhhhhccc
Q 041924 6 QLVIVALFSAIAFAE-------RLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 6 ~~V~t~ils~l~LgE-------~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+.++.+++--++.|+ +-....++|.++.+.|+.+.-+.-
T Consensus 110 ~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 110 CAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 344455554444332 223356888899999998888753
No 205
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=24.06 E-value=74 Score=19.91 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=14.9
Q ss_pred cchhhhhhhhhHHHHHhhhhhhcc
Q 041924 20 ERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 20 E~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
.+=-+..++|.-++..|+.++...
T Consensus 23 ~rnlir~ligl~im~~av~L~lv~ 46 (119)
T PRK08388 23 KRNLIKLILALDLIDSGIHLLLIS 46 (119)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 444456677777777777666543
No 206
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=23.51 E-value=27 Score=25.38 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHhhhhhhccc
Q 041924 24 LGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 24 l~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+..++..+|+++|++.+++.+
T Consensus 151 paVVI~~iLLIA~iIa~icyr 171 (290)
T PF05454_consen 151 PAVVIAAILLIAGIIACICYR 171 (290)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 345667777788888877655
No 207
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=23.47 E-value=1.3e+02 Score=21.85 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=9.2
Q ss_pred chHHHHHHHHHHHHHh
Q 041924 3 SPLQLVIVALFSAIAF 18 (66)
Q Consensus 3 ~pL~~V~t~ils~l~L 18 (66)
.|+.++++++...+++
T Consensus 387 ~~~~~~~~~~~~~~~~ 402 (445)
T PRK10644 387 YLAVTLIAFVYCIWAV 402 (445)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4566666666554443
No 208
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.39 E-value=79 Score=21.79 Aligned_cols=16 Identities=25% Similarity=0.546 Sum_probs=11.0
Q ss_pred CchHHHHHHHHHHHHH
Q 041924 2 FSPLQLVIVALFSAIA 17 (66)
Q Consensus 2 F~pL~~V~t~ils~l~ 17 (66)
|.+++.++++++++++
T Consensus 61 f~g~h~iiAa~La~~l 76 (184)
T COG3216 61 FFGLHMIIAAVLAIVL 76 (184)
T ss_pred cchHHHHHHHHHHHHH
Confidence 4567777777777665
No 209
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=23.36 E-value=63 Score=17.49 Aligned_cols=17 Identities=35% Similarity=0.202 Sum_probs=11.4
Q ss_pred hhhhhHHHHHhhhhhhc
Q 041924 26 SLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~ 42 (66)
-.+|..+++.|.+..-.
T Consensus 29 ~~~Gi~Lii~g~v~r~~ 45 (49)
T PF11384_consen 29 ILIGIGLIISGGVGRRR 45 (49)
T ss_pred HHHhHHHHhhhhhhhhh
Confidence 35677788777776544
No 210
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=23.19 E-value=18 Score=23.43 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=14.8
Q ss_pred hhhhHHHHHhhhhhhcccc
Q 041924 27 LIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 27 iiG~~lIi~Gi~l~~~~~~ 45 (66)
+.|+++|++|..|+-|-..
T Consensus 13 ~~G~~ii~~G~~l~~y~tP 31 (128)
T PF07960_consen 13 VAGAVIIGGGPALVKYTTP 31 (128)
T ss_pred HhcceeEeechHHheecCC
Confidence 4588889999998887643
No 211
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=22.96 E-value=63 Score=19.08 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=15.4
Q ss_pred chhhhhhhhhHHHHHhhhhhhcc
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
.+|++-+.|...++.+..+..+.
T Consensus 51 ~~t~g~~~g~~~~~~~~~l~~~Y 73 (91)
T PF04341_consen 51 SLTLGIVLGLGQIVFAWVLTWLY 73 (91)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHH
Confidence 67777878877776665555443
No 212
>PLN02822 serine palmitoyltransferase
Probab=22.93 E-value=51 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=26.0
Q ss_pred HHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924 16 IAFAERLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 16 l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
+++|.......++-.+|++..+++++..+++
T Consensus 28 ~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~ 58 (481)
T PLN02822 28 VVFGVHIGGHLVVEGLLIVVIVFLLSQKSYK 58 (481)
T ss_pred eEeecCCCchhHHHHHHHHHHHHHHHcCcCC
Confidence 4678889999999999999999999866544
No 213
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=22.82 E-value=85 Score=18.15 Aligned_cols=17 Identities=24% Similarity=0.686 Sum_probs=10.7
Q ss_pred hhhhhHHHHHhhhhhhc
Q 041924 26 SLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~ 42 (66)
.++|.++.+.|.++.++
T Consensus 6 Fl~~l~lliig~~~~v~ 22 (92)
T PF13038_consen 6 FLVGLILLIIGGFLFVF 22 (92)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666666654
No 214
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=22.79 E-value=72 Score=21.79 Aligned_cols=22 Identities=18% Similarity=0.646 Sum_probs=16.6
Q ss_pred chhhhhhhhhHHHHHhhhhhhc
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
.+..+++|||++...|+.-+++
T Consensus 157 ~FD~~SFiGGIVL~LGv~aI~f 178 (186)
T PF05283_consen 157 TFDAASFIGGIVLTLGVLAIIF 178 (186)
T ss_pred CCchhhhhhHHHHHHHHHHHHH
Confidence 3567889999998888765553
No 215
>PRK14774 lipoprotein signal peptidase; Provisional
Probab=22.67 E-value=1.9e+02 Score=19.52 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=14.7
Q ss_pred HHhccchhhhhhhhhHHHHHhhhhh
Q 041924 16 IAFAERLHLGSLIGAFLIVVGLYCV 40 (66)
Q Consensus 16 l~LgE~ltl~~iiG~~lIi~Gi~l~ 40 (66)
++....-+....+|..+|++|.+--
T Consensus 81 ~~~~~~~~~~~~ial~LIlgGAlGN 105 (185)
T PRK14774 81 WVWRSTPTRLARISGGLLIGGALGN 105 (185)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHH
Confidence 3334444445557777888877643
No 216
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=22.26 E-value=77 Score=19.01 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=6.6
Q ss_pred HHHHHhhhhhhc
Q 041924 31 FLIVVGLYCVLW 42 (66)
Q Consensus 31 ~lIi~Gi~l~~~ 42 (66)
++|+.-+|....
T Consensus 48 LLIv~~vy~car 59 (79)
T PF07213_consen 48 LLIVLVVYYCAR 59 (79)
T ss_pred HHHHHHHHhhcc
Confidence 455555555554
No 217
>PF14927 Neurensin: Neurensin
Probab=22.04 E-value=86 Score=20.53 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=12.9
Q ss_pred hccchhhhhhhhh-------HHHHHhhhhhhccc
Q 041924 18 FAERLHLGSLIGA-------FLIVVGLYCVLWGK 44 (66)
Q Consensus 18 LgE~ltl~~iiG~-------~lIi~Gi~l~~~~~ 44 (66)
++..+..-.++|. ++..+++++..|.+
T Consensus 91 ~n~~Ld~c~laG~~L~~lGg~lla~~Ll~s~~~~ 124 (140)
T PF14927_consen 91 FNNALDTCKLAGLILLCLGGILLAVCLLVSIWKG 124 (140)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444444 44444455555544
No 218
>PRK15049 L-asparagine permease; Provisional
Probab=21.88 E-value=2.5e+02 Score=21.08 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=3.7
Q ss_pred hHHHHHHH
Q 041924 4 PLQLVIVA 11 (66)
Q Consensus 4 pL~~V~t~ 11 (66)
|..++++.
T Consensus 423 p~~~~~~l 430 (499)
T PRK15049 423 PFTSWLTL 430 (499)
T ss_pred cHHHHHHH
Confidence 44444443
No 219
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=21.82 E-value=1.9e+02 Score=19.08 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=11.8
Q ss_pred HHHHHHHhccchhhhhhhhhHHHHH
Q 041924 11 ALFSAIAFAERLHLGSLIGAFLIVV 35 (66)
Q Consensus 11 ~ils~l~LgE~ltl~~iiG~~lIi~ 35 (66)
+.++..+++ +++-++.||++.+.
T Consensus 51 ~~~G~~ll~--~~~~~iaGGllLl~ 73 (176)
T TIGR03717 51 TAVAVYLLA--IPFLKLIGGLLLLW 73 (176)
T ss_pred HHHHHHHHH--hHHHHHHHHHHHHH
Confidence 344445555 45556666554433
No 220
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=21.72 E-value=2.2e+02 Score=19.96 Aligned_cols=12 Identities=8% Similarity=-0.053 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhc
Q 041924 8 VIVALFSAIAFA 19 (66)
Q Consensus 8 V~t~ils~l~Lg 19 (66)
+...++|.++-.
T Consensus 198 v~~~iiaAiiTP 209 (258)
T PRK10921 198 VGAFVVGMLLTP 209 (258)
T ss_pred HHHHHHHHHcCC
Confidence 334455555543
No 221
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=21.66 E-value=1.8e+02 Score=20.81 Aligned_cols=17 Identities=0% Similarity=-0.031 Sum_probs=7.2
Q ss_pred HHHHhhhhhhcccccch
Q 041924 32 LIVVGLYCVLWGKKKDR 48 (66)
Q Consensus 32 lIi~Gi~l~~~~~~~e~ 48 (66)
+.+.|+.+..+-.+-|+
T Consensus 423 ~~~~~~~~~~~~~~~~~ 439 (452)
T PRK11273 423 GSILAVILLIVVMIGEK 439 (452)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 33444444444343333
No 222
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=21.60 E-value=1.4e+02 Score=21.09 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhc--cchh--hhhhhhhHHHHHhhhhhhccc
Q 041924 6 QLVIVALFSAIAFA--ERLH--LGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 6 ~~V~t~ils~l~Lg--E~lt--l~~iiG~~lIi~Gi~l~~~~~ 44 (66)
..+-+.++++.+-. |... -...+|..+++.|+++..-.+
T Consensus 88 atip~~v~G~~~~~~i~~~~~~~~~~v~~~Li~~g~lL~~~~~ 130 (259)
T PF02673_consen 88 ATIPTGVVGLLFKDFIEALFFSSPLVVAIALIITGLLLWLADR 130 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Confidence 34455666655422 2222 234689999999999888544
No 223
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=21.59 E-value=45 Score=18.09 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=14.8
Q ss_pred hhhHHHHHhhhhhhccccc
Q 041924 28 IGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 28 iG~~lIi~Gi~l~~~~~~~ 46 (66)
-|.-++-+|.|++.-.|++
T Consensus 9 SG~GLig~G~Yv~~~ark~ 27 (47)
T PF15055_consen 9 SGGGLIGAGAYVYAQARKR 27 (47)
T ss_pred cccchHHHHHHHHHHHhhc
Confidence 4677888999998877654
No 224
>PRK14401 membrane protein; Provisional
Probab=21.49 E-value=1.7e+02 Score=20.11 Aligned_cols=22 Identities=27% Similarity=0.156 Sum_probs=14.6
Q ss_pred chhhhhhhhhHHHHHhhhhhhc
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~ 42 (66)
+......+...+++.|+|..+.
T Consensus 112 p~~~li~~~ifl~v~~~~~~~~ 133 (187)
T PRK14401 112 PGTTLGTVAFGLAVAGLYRALL 133 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444566788889998874
No 225
>PRK12579 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=21.46 E-value=2e+02 Score=20.53 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHhccchhh-hhhhhhHHHHHhhhhhhccc
Q 041924 4 PLQLVIVALFSAIAFAERLHL-GSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl-~~iiG~~lIi~Gi~l~~~~~ 44 (66)
++.|++-.+-.|++++=..++ |-..||+++-+++.+.....
T Consensus 118 ~l~plill~s~yl~l~GH~~PGGGF~gGlI~a~A~iL~~la~ 159 (258)
T PRK12579 118 PMSILLMALGIITILGGHITPGGGFQGGALIAAAYILSIVAF 159 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHC
Confidence 566766677778888888777 46788888888877776543
No 226
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=21.10 E-value=1.4e+02 Score=20.15 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=6.6
Q ss_pred hhhhhhhhhHHHHH
Q 041924 22 LHLGSLIGAFLIVV 35 (66)
Q Consensus 22 ltl~~iiG~~lIi~ 35 (66)
+.--++.||++...
T Consensus 72 l~afrIaGGiiL~~ 85 (201)
T TIGR00427 72 IDAFRIAGGILLFT 85 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445555544433
No 227
>PF15345 TMEM51: Transmembrane protein 51
Probab=21.07 E-value=57 Score=23.19 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=10.6
Q ss_pred hhHHHHHhhhhhhccccc
Q 041924 29 GAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 29 G~~lIi~Gi~l~~~~~~~ 46 (66)
|.+|.+.-++|.++.|++
T Consensus 68 Gv~LLLLSICL~IR~KRr 85 (233)
T PF15345_consen 68 GVALLLLSICLSIRDKRR 85 (233)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566666666665544
No 228
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=20.91 E-value=81 Score=17.38 Aligned_cols=15 Identities=27% Similarity=0.569 Sum_probs=8.6
Q ss_pred hhhhHHHHHhhhhhh
Q 041924 27 LIGAFLIVVGLYCVL 41 (66)
Q Consensus 27 iiG~~lIi~Gi~l~~ 41 (66)
++|.++++.|+.+..
T Consensus 6 v~G~~lv~~Gii~~~ 20 (53)
T PF09656_consen 6 VLGWVLVVAGIIMLP 20 (53)
T ss_pred hHHHHHHHHHHHhhc
Confidence 456666666665543
No 229
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=20.67 E-value=1.9e+02 Score=20.37 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=20.8
Q ss_pred HHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924 10 VALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 10 t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
.++.+.+..-.--....+.+..++++..+...|..++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK11195 347 LGLYSLLVKLGVPVVAVIVGFGLLVALAMALLWRWHR 383 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333333334566777777777777776543
No 230
>PRK12505 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=20.63 E-value=2.5e+02 Score=18.61 Aligned_cols=40 Identities=8% Similarity=0.124 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhccchhh-hhhhhhHHHHHhhhhhhccc
Q 041924 5 LQLVIVALFSAIAFAERLHL-GSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 5 L~~V~t~ils~l~LgE~ltl-~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+.|++-..-.|++++=..++ |-..|++++.+++.+.....
T Consensus 26 l~P~illfs~ylll~Gh~~PGGGFqgGlI~Aaa~iL~~la~ 66 (159)
T PRK12505 26 VAPFVFTFGLFVMFHGADSPGGGFQGGVIVASVVLMLAFAF 66 (159)
T ss_pred HHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHC
Confidence 55677777778888877777 46778888877777766543
No 231
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.62 E-value=1.6e+02 Score=17.01 Aligned_cols=41 Identities=7% Similarity=0.019 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccccc
Q 041924 6 QLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 6 ~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
.-+++.+.||+.=.=..++...++++++.+-+.+=-|.-.+
T Consensus 20 ~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~ 60 (76)
T PF06645_consen 20 SAIISFIVGYITQSFSYTFYIYGAGVVLTLLVVVPPWPFYN 60 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeCCcHhhc
Confidence 44555566666533333444444444444444444465433
No 232
>PF01004 Flavi_M: Flavivirus envelope glycoprotein M; InterPro: IPR000069 Flaviviruses are small enveloped viruses with virions comprised of three proteins called C, M and E [, , ]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for the proteins entry into the membrane. prM is cleaved to form M in a late-stage cleavage event. Associated with this cleavage is a change in the infectivity and fusion activity of the virus.; GO: 0019058 viral infectious cycle, 0019028 viral capsid
Probab=20.44 E-value=2e+02 Score=16.89 Aligned_cols=25 Identities=4% Similarity=0.017 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHHHhccchhhhhhh
Q 041924 3 SPLQLVIVALFSAIAFAERLHLGSLI 28 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~~ii 28 (66)
||.-.+.+++++|.+ |++.+-.-++
T Consensus 39 Np~~al~a~~l~w~l-g~s~~Qrvi~ 63 (75)
T PF01004_consen 39 NPGYALAAVALAWML-GSSTTQRVIF 63 (75)
T ss_pred CchHHHHHHHHHHHH-cCCchHHHHH
Confidence 577777888888877 6665554433
No 233
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.29 E-value=87 Score=19.40 Aligned_cols=8 Identities=38% Similarity=0.990 Sum_probs=2.9
Q ss_pred HHHHhhhh
Q 041924 32 LIVVGLYC 39 (66)
Q Consensus 32 lIi~Gi~l 39 (66)
+++++.+.
T Consensus 14 l~~~~~~~ 21 (130)
T PF12273_consen 14 LFLFLFYC 21 (130)
T ss_pred HHHHHHHH
Confidence 33333333
Done!