Query 041924
Match_columns 66
No_of_seqs 115 out of 705
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 20:58:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 2E-08 6.7E-13 63.9 4.0 42 3-44 64-105 (137)
2 3b5d_A Multidrug transporter E 98.3 6E-07 2E-11 54.6 4.7 42 3-44 64-105 (110)
3 3l1l_A Arginine/agmatine antip 86.2 0.67 2.3E-05 31.8 3.4 44 4-47 388-431 (445)
4 3kcu_A Probable formate transp 66.3 3.2 0.00011 28.7 2.1 26 20-45 256-281 (285)
5 2jwa_A Receptor tyrosine-prote 64.3 6.7 0.00023 20.3 2.7 8 7-14 13-20 (44)
6 2jo1_A Phospholemman; FXYD1, N 63.8 4.2 0.00014 23.2 2.0 20 25-44 20-39 (72)
7 4fc4_A Nitrite transporter NIR 62.5 2.8 9.5E-05 28.7 1.2 25 21-45 228-252 (261)
8 2zxe_G FXYD10, phospholemman-l 62.2 5.1 0.00018 23.0 2.2 20 25-44 23-42 (74)
9 3tds_E Formate/nitrite transpo 57.3 4.4 0.00015 27.8 1.5 24 21-44 235-258 (268)
10 2jp3_A FXYD domain-containing 54.9 6.1 0.00021 22.3 1.6 20 25-44 21-40 (67)
11 1q90_G Cytochrome B6F complex 49.3 9.8 0.00033 19.1 1.7 28 19-46 2-30 (37)
12 2knc_A Integrin alpha-IIB; tra 49.1 8.3 0.00029 20.7 1.5 18 25-42 17-34 (54)
13 3kly_A Putative formate transp 46.7 11 0.00038 25.9 2.2 24 20-43 255-278 (280)
14 1vf5_G Protein PET G; photosyn 44.0 9.9 0.00034 19.1 1.2 28 19-46 2-30 (37)
15 1s4x_A Integrin beta-3; cell a 38.3 10 0.00035 21.1 0.8 27 25-51 9-35 (67)
16 2rdd_B UPF0092 membrane protei 35.5 18 0.00062 17.5 1.4 13 31-43 10-22 (37)
17 2wy3_A MHC class I polypeptide 32.6 9.3 0.00032 26.0 0.0 22 24-46 292-313 (319)
18 2k1k_A Ephrin type-A receptor 25.5 57 0.002 15.9 2.3 9 35-43 28-36 (38)
19 3b8e_G Na+/K+ ATPase gamma sub 25.5 7.7 0.00026 18.5 -1.0 20 25-44 8-27 (29)
20 3j27_B Matrix protein, small e 21.0 1.1E+02 0.0038 17.0 3.2 25 3-28 39-63 (75)
21 1pw4_A Glycerol-3-phosphate tr 20.7 1.8E+02 0.0062 18.8 5.0 17 26-42 416-432 (451)
22 3gia_A Uncharacterized protein 20.6 1.3E+02 0.0043 20.3 3.9 7 6-12 375-381 (444)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.66 E-value=2e-08 Score=63.92 Aligned_cols=42 Identities=31% Similarity=0.469 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
..+.|++++++|+++|||++++.+++|.++|++|++++.+.+
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 457999999999999999999999999999999999998754
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.35 E-value=6e-07 Score=54.55 Aligned_cols=42 Identities=31% Similarity=0.469 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhccc
Q 041924 3 SPLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
..+.|++++++|+++|||++++.+++|.++|++|+++....+
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 356899999999999999999999999999999999987643
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=86.16 E-value=0.67 Score=31.76 Aligned_cols=44 Identities=9% Similarity=-0.102 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhhhHHHHHhhhhhhcccccc
Q 041924 4 PLQLVIVALFSAIAFAERLHLGSLIGAFLIVVGLYCVLWGKKKD 47 (66)
Q Consensus 4 pL~~V~t~ils~l~LgE~ltl~~iiG~~lIi~Gi~l~~~~~~~e 47 (66)
|+.++++.++..+.+-..-....+.|..+++.|+.++.+.+++.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44555554444333222112234567888888887777655433
No 4
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=66.26 E-value=3.2 Score=28.66 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=20.3
Q ss_pred cchhhhhhhhhHHHHHhhhhhhcccc
Q 041924 20 ERLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 20 E~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
=+.++|.++||.++++.+|.+...|+
T Consensus 256 ipvtlGNiIGG~~fvgl~y~~~~~~~ 281 (285)
T 3kcu_A 256 IPVTIGNIIGGGLLVGLTYWVIYLRE 281 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 36778899999999988888876543
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=64.31 E-value=6.7 Score=20.31 Aligned_cols=8 Identities=25% Similarity=0.364 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 041924 7 LVIVALFS 14 (66)
Q Consensus 7 ~V~t~ils 14 (66)
.+.+.+.+
T Consensus 13 ~Ia~~vVG 20 (44)
T 2jwa_A 13 SIISAVVG 20 (44)
T ss_dssp HHHHHHHH
T ss_pred chHHHHHH
Confidence 34444444
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=63.81 E-value=4.2 Score=23.24 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=15.9
Q ss_pred hhhhhhHHHHHhhhhhhccc
Q 041924 25 GSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~~~ 44 (66)
|-+.++++++.|+++.+++|
T Consensus 20 GLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 20 GLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCc
Confidence 45677888999999988765
No 7
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=62.47 E-value=2.8 Score=28.65 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=18.9
Q ss_pred chhhhhhhhhHHHHHhhhhhhcccc
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~~~~ 45 (66)
+.++|.++||.++++.+|.+...++
T Consensus 228 pvtlGNiiGG~~fvgl~y~~~~~~~ 252 (261)
T 4fc4_A 228 WVTLGNTLSGVVFMGLGYWYATPKS 252 (261)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 6778999999999988888776443
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=62.25 E-value=5.1 Score=22.99 Aligned_cols=20 Identities=40% Similarity=0.707 Sum_probs=16.4
Q ss_pred hhhhhhHHHHHhhhhhhccc
Q 041924 25 GSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~~~ 44 (66)
|-+.++++++.|+++.+++|
T Consensus 23 GLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 23 GLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred cchhHHHHHHHHHHHHHcCc
Confidence 45678889999999999876
No 9
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=57.25 E-value=4.4 Score=27.78 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.1
Q ss_pred chhhhhhhhhHHHHHhhhhhhccc
Q 041924 21 RLHLGSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 21 ~ltl~~iiG~~lIi~Gi~l~~~~~ 44 (66)
+.++|.++||.++++.+|.++..+
T Consensus 235 pvtlGNiiGG~~fvgl~y~~~~~~ 258 (268)
T 3tds_E 235 AVTLGNIVGGALFMGLGTYILGKE 258 (268)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 778899999999988888877644
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=54.95 E-value=6.1 Score=22.27 Aligned_cols=20 Identities=35% Similarity=0.663 Sum_probs=16.0
Q ss_pred hhhhhhHHHHHhhhhhhccc
Q 041924 25 GSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~~~ 44 (66)
|-+.++++++.|+++.+++|
T Consensus 21 GLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 21 GLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTH
T ss_pred chhhHHHHHHHHHHHHHcCc
Confidence 45677888999999988775
No 11
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=49.34 E-value=9.8 Score=19.10 Aligned_cols=28 Identities=21% Similarity=0.403 Sum_probs=19.7
Q ss_pred ccchhhhhhhhhHHH-HHhhhhhhccccc
Q 041924 19 AERLHLGSLIGAFLI-VVGLYCVLWGKKK 46 (66)
Q Consensus 19 gE~ltl~~iiG~~lI-i~Gi~l~~~~~~~ 46 (66)
-|++-.|.++|.+.| ++|++...|.+.+
T Consensus 2 vE~lL~GIVlGlipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 2 VEPLLCGIVLGLVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhhhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 366677777787654 6788888887643
No 12
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=49.11 E-value=8.3 Score=20.72 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=11.3
Q ss_pred hhhhhhHHHHHhhhhhhc
Q 041924 25 GSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~ 42 (66)
.+++||+++++-+.+.+|
T Consensus 17 ~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777666666666
No 13
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=46.65 E-value=11 Score=25.85 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=19.4
Q ss_pred cchhhhhhhhhHHHHHhhhhhhcc
Q 041924 20 ERLHLGSLIGAFLIVVGLYCVLWG 43 (66)
Q Consensus 20 E~ltl~~iiG~~lIi~Gi~l~~~~ 43 (66)
=+.++|.++||.++++.+|.++..
T Consensus 255 ipvtlGNiiGG~~fvgl~y~~~~~ 278 (280)
T 3kly_A 255 IPVTLGNIVGGGVFVGMWYWLIYL 278 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 366788999999999888887753
No 14
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=44.02 E-value=9.9 Score=19.07 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=15.4
Q ss_pred ccchhhhhhhhhHHH-HHhhhhhhccccc
Q 041924 19 AERLHLGSLIGAFLI-VVGLYCVLWGKKK 46 (66)
Q Consensus 19 gE~ltl~~iiG~~lI-i~Gi~l~~~~~~~ 46 (66)
-|++-.|.++|.+.| ++|++...|.+.+
T Consensus 2 vEplL~GIVlGlipvtl~GLfv~Ay~Qyr 30 (37)
T 1vf5_G 2 VEPLLDGLVLGLVFATLGGLFYAAYQQYK 30 (37)
T ss_dssp -------CHHHHHHHHHHHHTHHHHHHTC
T ss_pred CchhhhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 366777778887654 6788888887644
No 15
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=38.34 E-value=10 Score=21.09 Aligned_cols=27 Identities=7% Similarity=-0.352 Sum_probs=8.8
Q ss_pred hhhhhhHHHHHhhhhhhcccccchhhh
Q 041924 25 GSLIGAFLIVVGLYCVLWGKKKDRFAV 51 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~~~~~e~~~~ 51 (66)
-+++|.+++++--++..+..++|=++.
T Consensus 9 ~~liGl~lLliwKll~~i~DrrEyakF 35 (67)
T 1s4x_A 9 HSSGLVPRGSHMKLLITIHDRKEFAKF 35 (67)
T ss_dssp ------------CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 357787777777666666655555443
No 16
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=35.45 E-value=18 Score=17.47 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=6.3
Q ss_pred HHHHHhhhhhhcc
Q 041924 31 FLIVVGLYCVLWG 43 (66)
Q Consensus 31 ~lIi~Gi~l~~~~ 43 (66)
+++++..|++++.
T Consensus 10 v~~~~ifYFl~iR 22 (37)
T 2rdd_B 10 VVFGLIFYFMILR 22 (37)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhh
Confidence 3444445555553
No 17
>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral protein complex, immune response, innate immunity, structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens} PDB: 1je6_A 1hyr_C 1b3j_A*
Probab=32.64 E-value=9.3 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHhhhhhhccccc
Q 041924 24 LGSLIGAFLIVVGLYCVLWGKKK 46 (66)
Q Consensus 24 l~~iiG~~lIi~Gi~l~~~~~~~ 46 (66)
.|.++| +++++|+++++|+++.
T Consensus 292 ~g~~~g-l~~~~g~~~~~~~~~~ 313 (319)
T 2wy3_A 292 SAAMPC-FVIIIILCVPCCKKKT 313 (319)
T ss_dssp -----------------------
T ss_pred chhhhh-HHHhheeEEEEEEecc
Confidence 366666 4578898888876653
No 18
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=25.54 E-value=57 Score=15.91 Aligned_cols=9 Identities=11% Similarity=0.179 Sum_probs=3.8
Q ss_pred Hhhhhhhcc
Q 041924 35 VGLYCVLWG 43 (66)
Q Consensus 35 ~Gi~l~~~~ 43 (66)
+++.++.|.
T Consensus 28 ~~l~~~~~r 36 (38)
T 2k1k_A 28 LGILVFRSR 36 (38)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHee
Confidence 334444443
No 19
>3b8e_G Na+/K+ ATPase gamma subunit transcript variant A; P-type ATPase, cation pump, membrane protein, hydrolase, ATP-binding, calcium transport; HET: PC1; 3.50A {Sus scrofa} PDB: 3kdp_G*
Probab=25.54 E-value=7.7 Score=18.47 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHhhhhhhccc
Q 041924 25 GSLIGAFLIVVGLYCVLWGK 44 (66)
Q Consensus 25 ~~iiG~~lIi~Gi~l~~~~~ 44 (66)
|-+.++++.+.|+.+.+++|
T Consensus 8 GLi~a~vlf~~Gi~iilS~k 27 (29)
T 3b8e_G 8 GLIFAALAFIVGLIIILSKR 27 (29)
T ss_dssp SSGGGGSSSTTTTTTSSCSS
T ss_pred cchHHHHHHHHHHHHHHhcc
Confidence 34567788888888877654
No 20
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=21.04 E-value=1.1e+02 Score=17.04 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHHHHhccchhhhhhh
Q 041924 3 SPLQLVIVALFSAIAFAERLHLGSLI 28 (66)
Q Consensus 3 ~pL~~V~t~ils~l~LgE~ltl~~ii 28 (66)
||.-.+.+++++| .+|+...-.-++
T Consensus 39 Np~~al~~~~~~w-~lG~~~~Qrvi~ 63 (75)
T 3j27_B 39 HPGFTIMAAILAY-TIGTTHFQRALI 63 (75)
T ss_dssp CCTHHHHHHHHHH-HSSCSSHHHHHH
T ss_pred ChHHHHHHHHHHH-HHcCChHHHHHH
Confidence 5666677777888 667766655443
No 21
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=20.65 E-value=1.8e+02 Score=18.81 Aligned_cols=17 Identities=0% Similarity=-0.107 Sum_probs=7.1
Q ss_pred hhhhhHHHHHhhhhhhc
Q 041924 26 SLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 26 ~iiG~~lIi~Gi~l~~~ 42 (66)
.++.+++.+.+..+..+
T Consensus 416 ~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 416 FMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 22
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=20.58 E-value=1.3e+02 Score=20.25 Aligned_cols=7 Identities=0% Similarity=0.168 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 041924 6 QLVIVAL 12 (66)
Q Consensus 6 ~~V~t~i 12 (66)
.++++++
T Consensus 375 ~~~~~~~ 381 (444)
T 3gia_A 375 IVIFSFI 381 (444)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
Done!