Query 041924
Match_columns 66
No_of_seqs 115 out of 705
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 20:59:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041924.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041924hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90l_ f.23.24.1 (L:) PetL su 39.0 11 0.00077 16.9 2.0 20 23-42 7-26 (32)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 15.7 33 0.0024 18.0 1.5 15 31-45 29-43 (91)
3 d1pv7a_ f.38.1.2 (A:) Lactose 13.1 1.2E+02 0.0088 17.1 4.1 11 31-41 176-186 (417)
4 d1iwga8 f.35.1.1 (A:513-566,A: 12.7 1E+02 0.0073 18.1 3.4 26 10-35 97-122 (222)
5 d1r3jc_ f.14.1.1 (C:) Potassiu 10.4 80 0.0058 16.3 2.1 19 24-42 66-84 (103)
6 d1q90g_ f.23.26.1 (G:) PetG su 10.3 84 0.0061 13.6 1.8 23 20-42 3-26 (30)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 9.8 56 0.0041 13.8 1.0 14 33-46 9-22 (27)
8 d2axtk1 f.23.36.1 (K:10-46) Ph 9.4 1E+02 0.0074 14.0 2.2 14 3-16 16-29 (37)
9 d1y5ic1 f.21.3.1 (C:1-225) Res 9.0 56 0.0041 19.4 1.1 19 27-45 95-113 (225)
10 d1v54d_ f.23.1.1 (D:) Mitochon 8.5 96 0.007 17.9 2.1 19 24-42 75-93 (144)
No 1
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=39.00 E-value=11 Score=16.93 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=15.2
Q ss_pred hhhhhhhhHHHHHhhhhhhc
Q 041924 23 HLGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 23 tl~~iiG~~lIi~Gi~l~~~ 42 (66)
+.+-++|+.....|+|+-+.
T Consensus 7 yvglligal~~tlgiylgll 26 (32)
T d1q90l_ 7 YVGLLIGALVFTLGIYLGLL 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35667888888889988554
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=15.71 E-value=33 Score=18.00 Aligned_cols=15 Identities=7% Similarity=-0.177 Sum_probs=7.5
Q ss_pred HHHHHhhhhhhcccc
Q 041924 31 FLIVVGLYCVLWGKK 45 (66)
Q Consensus 31 ~lIi~Gi~l~~~~~~ 45 (66)
.+++.|++++..-|.
T Consensus 29 ~v~V~~~~~~~~~ry 43 (91)
T d1fftb2 29 VIPAILMAVGFAWKY 43 (91)
T ss_dssp TTHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhhheee
Confidence 444555555554443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.10 E-value=1.2e+02 Score=17.10 Aligned_cols=11 Identities=0% Similarity=0.262 Sum_probs=4.1
Q ss_pred HHHHHhhhhhh
Q 041924 31 FLIVVGLYCVL 41 (66)
Q Consensus 31 ~lIi~Gi~l~~ 41 (66)
...+..+.+..
T Consensus 176 ~~~~~~~~~~~ 186 (417)
T d1pv7a_ 176 CALILAVLLFF 186 (417)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=12.71 E-value=1e+02 Score=18.11 Aligned_cols=26 Identities=15% Similarity=-0.008 Sum_probs=19.0
Q ss_pred HHHHHHHHhccchhhhhhhhhHHHHH
Q 041924 10 VALFSAIAFAERLHLGSLIGAFLIVV 35 (66)
Q Consensus 10 t~ils~l~LgE~ltl~~iiG~~lIi~ 35 (66)
+++++..+++-+++..+.+|.++.+.
T Consensus 97 ~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 97 GALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhhhhcccccchhh
Confidence 45566778899999988877766443
No 5
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.42 E-value=80 Score=16.30 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=13.6
Q ss_pred hhhhhhhHHHHHhhhhhhc
Q 041924 24 LGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 24 l~~iiG~~lIi~Gi~l~~~ 42 (66)
+++++..+.++.|+.++..
T Consensus 66 ~gr~~~~~~~~~Gi~~~~~ 84 (103)
T d1r3jc_ 66 WGRCVAVVVMVAGITSFGL 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4577777888888877654
No 6
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.28 E-value=84 Score=13.60 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=12.2
Q ss_pred cchhhhhhhhhHHH-HHhhhhhhc
Q 041924 20 ERLHLGSLIGAFLI-VVGLYCVLW 42 (66)
Q Consensus 20 E~ltl~~iiG~~lI-i~Gi~l~~~ 42 (66)
|++-.|.++|.+-| ++|++...|
T Consensus 3 E~ll~GivlGlipiTl~Glfv~Ay 26 (30)
T d1q90g_ 3 EPLLCGIVLGLVPVTIAGLFVTAY 26 (30)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHhhHHHHHHHHHHHHH
Confidence 44555555565433 456665544
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.83 E-value=56 Score=13.83 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=8.3
Q ss_pred HHHhhhhhhccccc
Q 041924 33 IVVGLYCVLWGKKK 46 (66)
Q Consensus 33 Ii~Gi~l~~~~~~~ 46 (66)
.++|++...+.+.+
T Consensus 9 tl~glf~aayqqyk 22 (27)
T d2e74g1 9 TLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 45677776665433
No 8
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.44 E-value=1e+02 Score=13.97 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=8.2
Q ss_pred chHHHHHHHHHHHH
Q 041924 3 SPLQLVIVALFSAI 16 (66)
Q Consensus 3 ~pL~~V~t~ils~l 16 (66)
.|+.|++-..++++
T Consensus 16 lPiIPv~f~lLafV 29 (37)
T d2axtk1 16 LPVIPVLFLALAFV 29 (37)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHH
Confidence 35666666666554
No 9
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=9.01 E-value=56 Score=19.42 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=14.0
Q ss_pred hhhhHHHHHhhhhhhcccc
Q 041924 27 LIGAFLIVVGLYCVLWGKK 45 (66)
Q Consensus 27 iiG~~lIi~Gi~l~~~~~~ 45 (66)
.+++++++.|+...++.+-
T Consensus 95 ~i~g~l~liG~~~ll~RR~ 113 (225)
T d1y5ic1 95 GASGVLCLIGGVLLLKRRL 113 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788888888887653
No 10
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.51 E-value=96 Score=17.93 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHhhhhhhc
Q 041924 24 LGSLIGAFLIVVGLYCVLW 42 (66)
Q Consensus 24 l~~iiG~~lIi~Gi~l~~~ 42 (66)
+..++|++++.+|+-+.+.
T Consensus 75 wK~v~g~~~~~i~~s~~i~ 93 (144)
T d1v54d_ 75 WKTVVGAAMFFIGFTALLL 93 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Done!