BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041926
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 516 bits (1328), Expect = e-146, Method: Compositional matrix adjust.
Identities = 256/492 (52%), Positives = 340/492 (69%), Gaps = 25/492 (5%)
Query: 9 SRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGN 68
++ L ID++QRLGVSYHF EI++ L ++ D+ END LY S++FRLLR +
Sbjct: 71 TQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDA-----END-LYTTSIRFRLLREH 124
Query: 69 GYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLES 128
GY +S DVFNKF+D GNFK S+ DVRG+L LY+A++LRVH E+ILDEA +F T HL S
Sbjct: 125 GYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHL-S 183
Query: 129 IATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQ 188
+A + PL+E+V HAL Q I +G+ R+EARHY+S+Y + SHN+ALL FAK+DFN LQ
Sbjct: 184 LAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQ 243
Query: 189 KLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPM 248
LH+KELS+I +WWK+LDF LP+ RDR+ E YFW VYFEPQYSLGR++L KV M
Sbjct: 244 FLHRKELSEICRWWKDLDFQRKLPYA-RDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAM 302
Query: 249 TSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQ 308
SI+DD YD Y +EEL +T+AIERWDI IDE+PEYMK Y+ALLDVY E + +A
Sbjct: 303 ASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEH 362
Query: 309 GKLYHLHYAKEA-----------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMG 351
G+ Y + YAK A NY PS +E+ A T GY ML+ TSFVGMG
Sbjct: 363 GRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMG 422
Query: 352 DIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEE 411
DIVT E+F+W+ S+P++I+AS++ R M+D+ HKF+ R S +ECYM++YG T +E
Sbjct: 423 DIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQE 482
Query: 412 ACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKD 471
A + F K V +AWKD+N+E L+PT +P +L R LNL R +DV+YR DGYT+ K
Sbjct: 483 AYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKG 542
Query: 472 FVASLLINPVSI 483
+ SLLI P+++
Sbjct: 543 GITSLLIEPIAL 554
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 334/503 (66%), Gaps = 31/503 (6%)
Query: 1 MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVH-QAYQDSDLCVNENDGLYYIS 59
+L K + TL LID I+RLG+SYHFE EIDEIL +++ Q +DLC + +
Sbjct: 57 LLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTS--------A 108
Query: 60 LQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAH 119
LQFRLLR +G+ IS ++F+KF+D +G FK SLA DV G+L+LYEA+H+R H ++IL++A
Sbjct: 109 LQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDAL 168
Query: 120 AFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS-IYPEESSHNEALLT 178
AF+T HLES A H + SPL EQV HAL Q +HKGV R+E R +IS IY +E S N LL
Sbjct: 169 AFSTIHLESAAPH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLR 227
Query: 179 FAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLG 238
FAKLDFN LQ LH++EL+ +S+WWK+LDF LP+ RDR+ ECYFWA+ VYFEPQYS
Sbjct: 228 FAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYA-RDRVVECYFWALGVYFEPQYSQA 286
Query: 239 RRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVY 298
R +L K M SI+DD +D YG +ELE +T AI+RWDI ID LP+YMK+ Y+A+LD+Y
Sbjct: 287 RVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLY 346
Query: 299 SEAEKDLASQGKLYHLHYAKE-----------------ANYIPSVDEYMTVASVTSGYPM 341
+ EK+L+S G+ + + +A E Y P V EY++ A T+ Y
Sbjct: 347 KDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYY 406
Query: 342 LSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECY 401
L+TTS++GM T++ FEW NP+++ AS + R+++D +++ E+SRG +A+ +EC
Sbjct: 407 LATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECC 465
Query: 402 MKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-D 460
M+ YG + +EA +F+ AWKD+NE LRPT V L ILNL R ++V Y D
Sbjct: 466 MRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 461 GYTHSAVVLKDFVASLLINPVSI 483
GYTH VLK + +LL++ + I
Sbjct: 526 GYTHPEEVLKPHIINLLVDSIKI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/503 (47%), Positives = 334/503 (66%), Gaps = 31/503 (6%)
Query: 1 MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVH-QAYQDSDLCVNENDGLYYIS 59
+L K + TL LID I+RLG+SYHFE EIDEIL +++ Q +DLC + +
Sbjct: 57 LLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTS--------A 108
Query: 60 LQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAH 119
LQFRLLR +G+ IS ++F+KF+D +G FK SLA DV G+L+LYEA+H+R H ++IL++A
Sbjct: 109 LQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDAL 168
Query: 120 AFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS-IYPEESSHNEALLT 178
AF+T HLES A H + SPL EQV HAL Q +HKGV R+E R +IS IY +E S N LL
Sbjct: 169 AFSTIHLESAAPH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLR 227
Query: 179 FAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLG 238
FAKLDFN LQ LH++EL+ +S+WWK+LDF LP+ RDR+ ECYFWA+ VYFEPQYS
Sbjct: 228 FAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYA-RDRVVECYFWALGVYFEPQYSQA 286
Query: 239 RRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVY 298
R +L K M SI+DD +D YG +ELE +T AI+RWDI ID LP+YMK+ Y+A+LD+Y
Sbjct: 287 RVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLY 346
Query: 299 SEAEKDLASQGKLYHLHYAKE-----------------ANYIPSVDEYMTVASVTSGYPM 341
+ EK+L+S G+ + + +A E Y P V EY++ A T+ Y
Sbjct: 347 KDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYY 406
Query: 342 LSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECY 401
L+TTS++GM T++ FEW NP+++ AS + R+++D +++ E+SRG +A+ +EC
Sbjct: 407 LATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECC 465
Query: 402 MKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-D 460
M+ YG + +EA +F+ AWKD+NE LRPT V L ILNL R ++V Y D
Sbjct: 466 MRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 461 GYTHSAVVLKDFVASLLINPVSI 483
GYTH VLK + +LL++ + I
Sbjct: 526 GYTHPEKVLKPHIINLLVDSIKI 548
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 334/503 (66%), Gaps = 31/503 (6%)
Query: 1 MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVH-QAYQDSDLCVNENDGLYYIS 59
+L K + TL LID I+RLG+SYHFE EID+IL +++ Q +DLC + +
Sbjct: 59 LLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------A 110
Query: 60 LQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAH 119
LQFRLLR +G+ IS ++F+KF+D +G FK SLA DV G+L+LYEA+H+R H ++IL++A
Sbjct: 111 LQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDAL 170
Query: 120 AFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS-IYPEESSHNEALLT 178
AF+T HLES A H + SPL EQV HAL Q +HKGV R+E R +IS IY +E S N LL
Sbjct: 171 AFSTIHLESAAPH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLR 229
Query: 179 FAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLG 238
FAKLDFN LQ LH++EL+ +S+WWK+LDF LP+ RDR+ ECYFWA+ VYFEPQYS
Sbjct: 230 FAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYA-RDRVVECYFWALGVYFEPQYSQA 288
Query: 239 RRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVY 298
R +L K M SI+DD +D YG +ELE +T AI+RWDI ID LP+YMK+ Y+A+LD+Y
Sbjct: 289 RVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLY 348
Query: 299 SEAEKDLASQGKLYHLHYAKE-----------------ANYIPSVDEYMTVASVTSGYPM 341
+ EK+L+S G+ + + +A E Y P V EY++ A T+ Y
Sbjct: 349 KDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYY 408
Query: 342 LSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECY 401
L+TTS++GM T++ FEW NP+++ AS + R+++D +++ E+SRG +A+ +EC
Sbjct: 409 LATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECC 467
Query: 402 MKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-D 460
M+ YG + +EA +F+ AWKD+NE LRPT V L ILNL R ++V Y D
Sbjct: 468 MRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 527
Query: 461 GYTHSAVVLKDFVASLLINPVSI 483
GYTH VLK + +LL++ + I
Sbjct: 528 GYTHPEKVLKPHIINLLVDSIKI 550
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 334/503 (66%), Gaps = 31/503 (6%)
Query: 1 MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVH-QAYQDSDLCVNENDGLYYIS 59
+L K + TL LID I+RLG+SYHFE EID+IL +++ Q +DLC + +
Sbjct: 44 LLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------A 95
Query: 60 LQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAH 119
LQFRLLR +G+ IS ++F+KF+D +G FK SLA DV G+L+LYEA+H+R H ++IL++A
Sbjct: 96 LQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDAL 155
Query: 120 AFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS-IYPEESSHNEALLT 178
AF+T HLES A H + SPL EQV HAL Q +HKGV R+E R +IS IY +E S N LL
Sbjct: 156 AFSTIHLESAAPH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLR 214
Query: 179 FAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLG 238
FAKLDFN LQ LH++EL+ +S+WWK+LDF LP+ RDR+ ECYFWA+ VYFEPQYS
Sbjct: 215 FAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYA-RDRVVECYFWALGVYFEPQYSQA 273
Query: 239 RRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVY 298
R +L K M SI+DD +D YG +ELE +T AI+RWDI ID LP+YMK+ Y+A+LD+Y
Sbjct: 274 RVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLY 333
Query: 299 SEAEKDLASQGKLYHLHYAKE-----------------ANYIPSVDEYMTVASVTSGYPM 341
+ EK+L+S G+ + + +A E Y P V EY++ A T+ Y
Sbjct: 334 KDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYY 393
Query: 342 LSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECY 401
L+TTS++GM T++ FEW NP+++ AS + R+++D +++ E+SRG +A+ +EC
Sbjct: 394 LATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECC 452
Query: 402 MKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-D 460
M+ YG + +EA +F+ AWKD+NE LRPT V L ILNL R ++V Y D
Sbjct: 453 MRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 512
Query: 461 GYTHSAVVLKDFVASLLINPVSI 483
GYTH VLK + +LL++ + I
Sbjct: 513 GYTHPEKVLKPHIINLLVDSIKI 535
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 334/503 (66%), Gaps = 31/503 (6%)
Query: 1 MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVH-QAYQDSDLCVNENDGLYYIS 59
+L K + TL LID I+RLG+SYHFE EID+IL +++ Q +DLC + +
Sbjct: 57 LLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------A 108
Query: 60 LQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAH 119
LQFRLLR +G+ IS ++F+KF+D +G FK SLA DV G+L+LYEA+H+R H ++IL++A
Sbjct: 109 LQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDAL 168
Query: 120 AFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS-IYPEESSHNEALLT 178
AF+T HLES A H + SPL EQV HAL Q +HKGV R+E R +IS IY +E S N LL
Sbjct: 169 AFSTIHLESAAPH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLR 227
Query: 179 FAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLG 238
FAKLDFN LQ LH++EL+ +S+WWK+LDF LP+ RDR+ ECYFWA+ VYFEPQYS
Sbjct: 228 FAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYA-RDRVVECYFWALGVYFEPQYSQA 286
Query: 239 RRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVY 298
R +L K M SI+DD +D YG +ELE +T AI+RWDI ID LP+YMK+ Y+A+LD+Y
Sbjct: 287 RVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLY 346
Query: 299 SEAEKDLASQGKLYHLHYAKE-----------------ANYIPSVDEYMTVASVTSGYPM 341
+ EK+L+S G+ + + +A E Y P V EY++ A T+ Y
Sbjct: 347 KDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYY 406
Query: 342 LSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECY 401
L+TTS++GM T++ FEW NP+++ AS + R+++D +++ E+SRG +A+ +EC
Sbjct: 407 LATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECC 465
Query: 402 MKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-D 460
M+ YG + +EA +F+ AWKD+NE LRPT V L ILNL R ++V Y D
Sbjct: 466 MRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 461 GYTHSAVVLKDFVASLLINPVSI 483
GYTH VLK + +LL++ + I
Sbjct: 526 GYTHPEKVLKPHIINLLVDSIKI 548
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 454 bits (1169), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/503 (47%), Positives = 334/503 (66%), Gaps = 31/503 (6%)
Query: 1 MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVH-QAYQDSDLCVNENDGLYYIS 59
+L K + TL LID I+RLG+SYHFE EID+IL +++ Q +DLC + +
Sbjct: 59 LLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------A 110
Query: 60 LQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAH 119
LQFRLLR +G+ IS ++F+KF+D +G FK SLA DV G+L+LYEA+H+R H ++IL++A
Sbjct: 111 LQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDAL 170
Query: 120 AFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS-IYPEESSHNEALLT 178
AF+T HLES A H + SPL EQV HAL Q +HKGV R+E R +IS IY +E S N LL
Sbjct: 171 AFSTIHLESAAPH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLR 229
Query: 179 FAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLG 238
FAKLDFN LQ LH++EL+ +S+WWK+LDF LP+ RDR+ ECYFW + VYFEPQYS
Sbjct: 230 FAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYA-RDRVVECYFWTLGVYFEPQYSQA 288
Query: 239 RRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVY 298
R +L K M SI+DD +D YG +ELE +T AI+RWDI ID LP+YMK+ Y+A+LD+Y
Sbjct: 289 RVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLY 348
Query: 299 SEAEKDLASQGKLYHLHYAKE-----------------ANYIPSVDEYMTVASVTSGYPM 341
+ EK+L+S G+ + + +A E Y P V EY++ A T+ Y +
Sbjct: 349 KDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYL 408
Query: 342 LSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECY 401
L+TTS++GM T++ FEW NP+++ AS + R+++D +++ E+SRG +A+ +EC
Sbjct: 409 LATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECC 467
Query: 402 MKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-D 460
M+ YG + +EA +F+ AWKD+NE LRPT V L ILNL R ++V Y D
Sbjct: 468 MRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLD 527
Query: 461 GYTHSAVVLKDFVASLLINPVSI 483
GYTH VLK + +LL++ + I
Sbjct: 528 GYTHPEKVLKPHIINLLVDSIKI 550
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/503 (47%), Positives = 334/503 (66%), Gaps = 31/503 (6%)
Query: 1 MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVH-QAYQDSDLCVNENDGLYYIS 59
+L K + TL LID I+RLG+SYHFE EID+IL +++ Q +DLC + +
Sbjct: 57 LLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------A 108
Query: 60 LQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAH 119
LQFRLLR +G+ IS ++F+KF+D +G FK SLA DV G+L+LYEA+H+R H ++IL++A
Sbjct: 109 LQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDAL 168
Query: 120 AFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS-IYPEESSHNEALLT 178
AF+T HLES A H + SPL EQV HAL Q +HKGV R+E R +IS IY +E S N LL
Sbjct: 169 AFSTIHLESAAPH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLR 227
Query: 179 FAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLG 238
FAKLDFN LQ LH++EL+ +S+WWK+LDF LP+ RDR+ ECYFWA+ VYFEPQYS
Sbjct: 228 FAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYA-RDRVVECYFWALGVYFEPQYSQA 286
Query: 239 RRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVY 298
R +L K M SI+DD +D YG +ELE +T AI+RWDI ID LP+YMK+ Y+A+LD+Y
Sbjct: 287 RVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLY 346
Query: 299 SEAEKDLASQGKLYHLHYAKE-----------------ANYIPSVDEYMTVASVTSGYPM 341
+ EK+L+S G+ + + +A E Y P V EY++ A T+ Y
Sbjct: 347 KDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYY 406
Query: 342 LSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECY 401
L+TTS++GM T++ FEW NP+++ AS + R+++D +++ E+SRG +A+ +EC
Sbjct: 407 LATTSYLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECC 465
Query: 402 MKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-D 460
M+ YG + +EA +F+ AWKD+NE LRPT V L ILNL R ++V Y D
Sbjct: 466 MRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 461 GYTHSAVVLKDFVASLLINPVSI 483
GYTH VLK + +LL++ + I
Sbjct: 526 GYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/503 (47%), Positives = 333/503 (66%), Gaps = 31/503 (6%)
Query: 1 MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVH-QAYQDSDLCVNENDGLYYIS 59
+L K + TL LID I+RLG+SYHFE EID+IL +++ Q +DLC + +
Sbjct: 57 LLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------A 108
Query: 60 LQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAH 119
LQFRLLR +G+ IS ++F+KF+D +G FK SLA DV G+L+LYEA+H+R H ++IL++A
Sbjct: 109 LQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDAL 168
Query: 120 AFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS-IYPEESSHNEALLT 178
AF+T HLES A H + SPL EQV HAL Q +HKGV R+E R +IS IY +E S N LL
Sbjct: 169 AFSTIHLESAAPH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLR 227
Query: 179 FAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLG 238
FAKLDFN LQ LH++EL+ +S+WWK+LDF LP+ RDR+ ECYF A+ VYFEPQYS
Sbjct: 228 FAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYA-RDRVVECYFSALGVYFEPQYSQA 286
Query: 239 RRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVY 298
R +L K M SI+DD +D YG +ELE +T AI+RWDI ID LP+YMK+ Y+A+LD+Y
Sbjct: 287 RVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLY 346
Query: 299 SEAEKDLASQGKLYHLHYAKE-----------------ANYIPSVDEYMTVASVTSGYPM 341
+ EK+L+S G+ + + +A E Y P V EY++ A T+ Y
Sbjct: 347 KDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYY 406
Query: 342 LSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECY 401
L+TTS++GM T++ FEW NP+++ AS + R+++D +++ E+SRG +A+ +EC
Sbjct: 407 LATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECC 465
Query: 402 MKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-D 460
M+ YG + +EA +F+ AWKD+NE LRPT V L ILNL R ++V Y D
Sbjct: 466 MRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 461 GYTHSAVVLKDFVASLLINPVSI 483
GYTH VLK + +LL++ + I
Sbjct: 526 GYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/503 (47%), Positives = 333/503 (66%), Gaps = 31/503 (6%)
Query: 1 MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVH-QAYQDSDLCVNENDGLYYIS 59
+L K + TL LID I+RLG+SYHFE EID+IL +++ Q +DLC + +
Sbjct: 57 LLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------A 108
Query: 60 LQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAH 119
LQFRLLR +G+ IS ++F+KF+D +G FK SLA DV G+L+LYEA+H+R H ++IL++A
Sbjct: 109 LQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDAL 168
Query: 120 AFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS-IYPEESSHNEALLT 178
AF+T HLES A H + SPL EQV HAL Q +HKGV R+E R +IS IY +E S N LL
Sbjct: 169 AFSTIHLESAAPH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLR 227
Query: 179 FAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLG 238
FAKLDFN LQ LH++EL+ +S+WWK+LDF LP+ RDR+ ECYF A+ VYFEPQYS
Sbjct: 228 FAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYA-RDRVVECYFSALGVYFEPQYSQA 286
Query: 239 RRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVY 298
R +L K M SI+DD +D YG +ELE +T AI+RWDI ID LP+YMK+ Y+A+LD+Y
Sbjct: 287 RVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLY 346
Query: 299 SEAEKDLASQGKLYHLHYAKE-----------------ANYIPSVDEYMTVASVTSGYPM 341
+ EK+L+S G+ + + +A E Y P V EY++ A T+ Y
Sbjct: 347 KDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYY 406
Query: 342 LSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECY 401
L+TTS++GM T++ FEW NP+++ AS + R+++D +++ E+SRG +A+ +EC
Sbjct: 407 LATTSYLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECC 465
Query: 402 MKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-D 460
M+ YG + +EA +F+ AWKD+NE LRPT V L ILNL R ++V Y D
Sbjct: 466 MRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLD 525
Query: 461 GYTHSAVVLKDFVASLLINPVSI 483
GYTH VLK + +LL++ + I
Sbjct: 526 GYTHPEEVLKPHIINLLVDSIKI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 327 bits (837), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 187/487 (38%), Positives = 276/487 (56%), Gaps = 21/487 (4%)
Query: 12 LELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYR 71
LELID +QRLG+ Y FES+I L R + + L+ +L FRLLR +G+
Sbjct: 68 LELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVT---KTSLHATALSFRLLRQHGFE 124
Query: 72 ISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIAT 131
+S + F+ F+D +GNF +L +D + +LSLYEA+ L + ENILDEA FA SHL+ ++
Sbjct: 125 VSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSE 184
Query: 132 HQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQKLH 191
+I LAEQV HAL P+H+ QRLEA I Y ++ N+ LL A LD+N +Q ++
Sbjct: 185 EKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVY 244
Query: 192 QKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPMTSI 251
Q++L + S+WW+ + A L F RDR+ E ++WAV V FEPQYS R +AK+F +I
Sbjct: 245 QRDLRETSRWWRRVGLATKLHFA-RDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTI 303
Query: 252 LDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSE-AEKDLASQGK 310
+DDIYDVYG +ELELFT A+ERWD+ AI++LP+YMKLC+ AL + +E A +L +G+
Sbjct: 304 IDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGE 363
Query: 311 --LYHLHYA---------KEANYI-----PSVDEYMTVASVTSGYPMLSTTSFVGMGDIV 354
L +L A +EA ++ P+ D+Y A +S P+ ++ + +
Sbjct: 364 NILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNI 423
Query: 355 TKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEEACN 414
KE E +I S RL ND+ S E +RG A+ V CYM+ G +EE A
Sbjct: 424 KKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATE 483
Query: 415 EFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVA 474
+ WK +N+E L ++ P + +NL R Y D +T + + V
Sbjct: 484 SVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVL 543
Query: 475 SLLINPV 481
S++ P+
Sbjct: 544 SVITEPI 550
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 301 bits (770), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 172/508 (33%), Positives = 273/508 (53%), Gaps = 31/508 (6%)
Query: 1 MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNEND----GLY 56
+LK +P + LELI ++ LG+S F+ EI EILG ++ ++ C + N+ LY
Sbjct: 47 LLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHK----CFHNNEVEKMDLY 102
Query: 57 YISLQFRLLRGNGYRISADVFNKFRDIDG-NFKPSLAKDVRGMLSLYEATHLRVHEENIL 115
+ +L FRLLR +G+ IS DVFN F++ G +FK SLA+D +GML LYEA+ L E+ L
Sbjct: 103 FTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL 162
Query: 116 DEAHAFATSHLESI---ATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSH 172
+ A FAT L+ ++I L ++H+L P+H +Q +EAR +I Y
Sbjct: 163 ELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDM 222
Query: 173 NEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFE 232
N + AKL+FN +Q HQ+EL D+S+WW L F LPF +RDR+ E +FWAV ++
Sbjct: 223 NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPF-VRDRLVESFFWAVGMFEP 281
Query: 233 PQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYR 292
Q+ R++ A + + +++DDIYDVYG +ELELFT +RWD +I LP YM+LCY
Sbjct: 282 HQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYW 341
Query: 293 ALLDVYSEAEKDLASQGKLYHLHYAKE-----------------ANYIPSVDEYMTVASV 335
+ + S+A D+ + + L Y ++ + Y PS+DEY+ +A +
Sbjct: 342 GVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKI 401
Query: 336 TSGYPMLSTTSFVGMGDIVTKESFEWSLSNPR-VIRASSVAARLMNDMVSHKFEQSRGHV 394
+ P + + ++ + + SL ++ + + RL +D+ + FE +RG V
Sbjct: 402 SVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDV 461
Query: 395 ASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDV 454
++CYMK+ A+EEEA + + AWKD+N P ++ N+ R
Sbjct: 462 PKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQF 521
Query: 455 VYRFEDGYTHSAVVLKDFVASLLINPVS 482
+Y DG+ + +A LL P +
Sbjct: 522 IYLHGDGFGVQHSKTYEHIAGLLFEPYA 549
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 280 bits (717), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 177/497 (35%), Positives = 261/497 (52%), Gaps = 32/497 (6%)
Query: 1 MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISL 60
ML+ + R LELID ++RLG+S HFE EI EIL + Y +++ ++E D LY +L
Sbjct: 76 MLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILN--SKYYTNNE--IDERD-LYSTAL 130
Query: 61 QFRLLRGNGYRISADVFNKFRDIDG-NFKPSLAKDVRGMLSLYEATHLRVHEENILDEAH 119
+FRLLR + +S +VF+ F++ G +FKPSL D RG+L LYEA+ L E L A
Sbjct: 131 RFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLAR 190
Query: 120 AFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTF 179
FAT L+ L ++ AL P H VQ AR +I Y N +L
Sbjct: 191 DFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLEL 250
Query: 180 AKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGR 239
AKLDFN +Q Q+EL + S+WW H LPF +RDRI ECY+W V Q+ R
Sbjct: 251 AKLDFNMVQAQFQQELKEASRWWNSTGLVHELPF-VRDRIVECYYWTTGVVERRQHGYER 309
Query: 240 RLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYS 299
+L K+ + + +DD++D+YG EEL+LFT+AI+RWDI ++ +LP YM++CY AL + +
Sbjct: 310 IMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVN 369
Query: 300 EAEKDLASQGKLYHLHYAKEA-----------------NYIPSVDEYMTVASVT-SGYPM 341
E D Y ++ + PS++EYM + ++ G P+
Sbjct: 370 EMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPI 429
Query: 342 LSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECY 401
LS F + D + +E+ E ++RAS RL +DM + E RG V V+CY
Sbjct: 430 LSHL-FFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCY 488
Query: 402 MKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFED- 460
M + A+EEEA R + WK +N+E + + + + NL R +Y+ E
Sbjct: 489 MNEKNASEEEAREHVRSLIDQTWKMMNKEMMTSSFSKYFVEVSA-NLARMAQWIYQHESD 547
Query: 461 --GYTHSAV--VLKDFV 473
G HS V +L+D +
Sbjct: 548 GFGMQHSLVNKMLRDLL 564
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 275 bits (703), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/503 (32%), Positives = 262/503 (52%), Gaps = 25/503 (4%)
Query: 2 LKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRV---HQAYQDSDLCVNENDGLYYI 58
L+ + R LELID +QR+G+S HF++E EIL + H Y++ E LY
Sbjct: 44 LEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNP--FPKEERDLYST 101
Query: 59 SLQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEA 118
SL FRLLR +G++++ +VF+ F++ +G FK SL+ D RG+L LYEA+ L E L+ A
Sbjct: 102 SLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESA 161
Query: 119 HAFATSHLE-SIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALL 177
FAT LE + + L ++ ++L P+H ++R A +I Y + N +L
Sbjct: 162 REFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVL 221
Query: 178 TFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSL 237
A LD N +Q Q+EL + +WW+ F LPF RDR+ ECYFW + Q++
Sbjct: 222 ELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFA-RDRLVECYFWNTGIIEPRQHAS 280
Query: 238 GRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDV 297
R ++ KV + +++DDIYDVYG EELE FT I RWDI +ID+LP+YM+LC+ AL +
Sbjct: 281 ARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNF 340
Query: 298 YSEAEKDLASQGKLYHLHYAKEA-----------------NYIPSVDEYMTVASVTSGYP 340
+ D+ + + + Y +++ + PS++EY+ + + P
Sbjct: 341 VDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGP 400
Query: 341 MLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVEC 400
+ T F + D TKE+ + ++R SS RL +D+ + E SRG V ++C
Sbjct: 401 CMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQC 460
Query: 401 YMKQYGATEEEACNEFRKQVSNAWKDVN-EECLRPTVVPMPLLMRILNLTRFLDVVYRFE 459
YM Y A+E EA + ++ WK +N E + + + ++L R ++Y
Sbjct: 461 YMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNG 520
Query: 460 DGYTHSAVVLKDFVASLLINPVS 482
DG+ ++ + L P +
Sbjct: 521 DGHGTQHPIIHQQMTRTLFEPFA 543
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 183/524 (34%), Positives = 286/524 (54%), Gaps = 60/524 (11%)
Query: 12 LELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLC---VNENDGLYYISLQFRLLRGN 68
L ++D I RLG+ HFE EI E L V++ + + + +N L +L FRLLR +
Sbjct: 302 LLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLH 361
Query: 69 GYRISADVFNKFRDIDGNFKPSLA---KDVRGMLSLYEATHLRVHEENILDEAHAFATSH 125
Y +S +F+ F+D +G F S KDV ML+LY A+ L ENILDEA +FAT +
Sbjct: 362 RYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKY 421
Query: 126 L-ESIATHQISSP------LAEQVKHALFQPIHKGVQRLEARHYISIYPEESS------- 171
L E++ + SS L++++K+AL H V R+EA+ Y +Y + +
Sbjct: 422 LREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVY 481
Query: 172 -----HNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLP-FTI-RDRIAECYF 224
+NE L KLDFN +Q +HQ+E+ +++ W+++ LP FT R+R E YF
Sbjct: 482 KLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRD----SGLPLFTFARERPLEFYF 537
Query: 225 WAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELP 284
A +EPQY+ R L KV + ++LDD+YD YG +EL+LFT A+ RWD+ + LP
Sbjct: 538 LVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLP 597
Query: 285 EYMKLCYRALLDVYS----EAEKDLASQGKL-----------YHLHYAKE-----ANYIP 324
+YMKLCY+ D+ EAEK+ QG+ Y L Y +E A Y+P
Sbjct: 598 DYMKLCYQIYYDIVHEVAWEAEKE---QGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVP 654
Query: 325 SVDEYMTVASVTSGYPMLSTTSFVGM-GDIVTKESFEWSLSNP--RVI-RASSVAARLMN 380
++DEY+ + G +L + + M G ++++E+ E + P RV+ +S+ +RL +
Sbjct: 655 TLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALE-KVDYPGRRVLTELNSLISRLAD 713
Query: 381 DMVSHKFEQSRGHVASCVECYMKQYG-ATEEEACNEFRKQVSNAWKDVNEECLRPTVVPM 439
D ++K E++RG +AS +ECYMK + TEEEA + + A K++ E L+P VP
Sbjct: 714 DTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPF 773
Query: 440 PLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLINPVSI 483
+ TR V+++ DG+ S + +KD + LI P+ +
Sbjct: 774 ACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 159/511 (31%), Positives = 266/511 (52%), Gaps = 43/511 (8%)
Query: 12 LELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNEND---GLYYISLQFRLLRGN 68
L L+D I+ LG+ HF+ EI L V++ + + + + L +L R LR +
Sbjct: 250 LSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMH 309
Query: 69 GYRISADVFNKFRDIDGNFKPSLAK---DVRGMLSLYEATHLRVHEENILDEAHAFATSH 125
GY +S+DV N F+D +G F S + ++R +++L+ A+ L +E +D+A FA +
Sbjct: 310 GYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPY 369
Query: 126 L-ESIATH-QISSPLAEQVKHALFQPIHKGVQRLEARHYI------------SIYPEESS 171
L E++AT ++ L +++++ + P H + RLEAR YI ++Y S
Sbjct: 370 LREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSL 429
Query: 172 HNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYF 231
N L AKLDFN +Q LHQ+EL +++WWKE A ++ FT R R+AE YF + F
Sbjct: 430 SNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFT-RHRVAEVYF--SSATF 485
Query: 232 EPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCY 291
EP+YS R K+ + + DD+ D++ +EL+ FT ++RWD + E+PE M+ C+
Sbjct: 486 EPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCF 545
Query: 292 RALLDVYSEAEKDLAS-QGKLYHLHYAK----------------EANYIPSVDEYMTVAS 334
+ + E D+ QG+ H K EA YIP+ +EY+ +
Sbjct: 546 KVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYA 605
Query: 335 VTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHV 394
++ G + + MG++V + E + S++ RL ND +++ E++RG
Sbjct: 606 ISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQ 665
Query: 395 ASCVECYMKQY-GATEEEACNEFRKQVSNAWKDVNEECLRPTV-VPMPLLMRILNLTRFL 452
AS + CYMK GATEE+A + V A K+ + E +P+ +PM I NL +
Sbjct: 666 ASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCV 725
Query: 453 DVVYRFEDGYTHSAVVLKDFVASLLINPVSI 483
+ Y+F DGY + +KD++ + I+P+ +
Sbjct: 726 QIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 241 bits (614), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 158/512 (30%), Positives = 265/512 (51%), Gaps = 47/512 (9%)
Query: 15 IDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYI---SLQFRLLRGNGYR 71
+D ++RLG+ HF+ EI E L V+ + + + + + I ++ R+LR +GY
Sbjct: 277 VDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYN 336
Query: 72 ISADVFNKFRDIDGNFKPSLAKDVRG---MLSLYEATHLRVHEENILDEAHAF------- 121
+S+DV FRD +G F L + RG ML++ +H+ E I++EA
Sbjct: 337 VSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRN 396
Query: 122 ATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYI------------SIYPEE 169
A ++++ + +V++AL P HK + RLEAR YI ++Y
Sbjct: 397 ALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMP 456
Query: 170 SSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAV 229
NE L AKLDFNK+Q +HQ EL D+ +WWK F +L FT R+R+ E YF +
Sbjct: 457 YISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFT-DLNFT-RERVTEIYFSPASF 514
Query: 230 YFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKL 289
FEP++S R + K T ILDD+YD +G ++L+LFT +++RWD+ +D++P+ MK+
Sbjct: 515 IFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKI 574
Query: 290 CYRALLDVYSE-AEKDLASQGK--LYHLH---------YAK-----EANYIPSVDEYMTV 332
C+ + +++ A++ QG+ L ++ Y K EA Y+PS +EY+
Sbjct: 575 CFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIEN 634
Query: 333 ASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRG 392
ASV+ + S + G+++T E R ++ + RL+ND +++ E+ +G
Sbjct: 635 ASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQG 694
Query: 393 HVASCVECYMKQYGA-TEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRF 451
VAS ++CYMK + +EEEA + NA +++N E + +P + R
Sbjct: 695 EVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVN-NKIPDIYKRLVFETARI 753
Query: 452 LDVVYRFEDGYTHS-AVVLKDFVASLLINPVS 482
+ + Y DG T S + +K+ V + L PV+
Sbjct: 754 MQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 122/257 (47%), Gaps = 29/257 (11%)
Query: 14 LIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYI---SLQFRLLRGNGY 70
++D +QRLG+S +FE EI E L VH+ + D+ +C + I ++ FRLLR +GY
Sbjct: 251 IVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGY 310
Query: 71 RISADVFNKFRDIDGNFKPSLAKD---VRGMLSLYEATHLRVHEENILDEAHAFATSHL- 126
++SADVF F +G F + + V GM +LY A+ L E IL A F+ ++L
Sbjct: 311 QVSADVFKNFEK-EGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLL 369
Query: 127 ------ESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESS--------- 171
E I I L ++ AL P + + R+E R YI Y E+
Sbjct: 370 EKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYR 429
Query: 172 ----HNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAV 227
+N L AK D+N Q HQ E KW++E + R + ECY+ A
Sbjct: 430 MPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSE--WGVRRSELLECYYLAA 487
Query: 228 AVYFEPQYSLGRRLLAK 244
A FE + S R + AK
Sbjct: 488 ATIFESERSHERMVWAK 504
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,488,845
Number of Sequences: 62578
Number of extensions: 615575
Number of successful extensions: 1595
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1468
Number of HSP's gapped (non-prelim): 22
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)