Query 041926
Match_columns 483
No_of_seqs 217 out of 881
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 1E-153 3E-158 1232.0 40.5 471 5-483 67-554 (554)
2 3m00_A Aristolochene synthase; 100.0 5E-153 2E-157 1225.4 41.3 469 5-483 63-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 3E-153 1E-157 1229.3 36.7 473 5-482 60-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 2E-148 8E-153 1197.7 40.9 477 5-482 47-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 2E-147 7E-152 1190.1 36.4 478 4-482 50-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 1E-146 5E-151 1186.6 33.9 470 5-482 80-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 6E-142 2E-146 1186.0 42.2 477 5-483 295-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 2E-141 6E-146 1175.2 44.7 474 5-483 243-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 2E-141 6E-146 1178.4 43.6 474 5-482 267-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 7E-108 2E-112 898.3 32.3 434 5-482 242-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 7.4E-47 2.5E-51 385.2 14.0 238 189-432 16-271 (337)
12 1di1_A Aristolochene synthase; 100.0 2.2E-46 7.6E-51 375.2 16.9 233 191-431 14-264 (300)
13 3bny_A Aristolochene synthase; 100.0 1.2E-45 4.1E-50 373.6 17.5 235 189-431 26-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 4E-41 1.4E-45 349.5 13.7 261 145-431 35-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 99.9 5.7E-28 1.9E-32 253.7 14.0 230 196-431 133-390 (433)
16 1yyq_A Trichodiene synthase; t 99.6 1.2E-14 4.2E-19 149.6 12.1 235 196-452 33-295 (374)
17 4hd1_A Squalene synthase HPNC; 74.0 58 0.002 31.4 14.1 181 239-442 41-239 (294)
18 3acx_A Dehydrosqualene synthas 65.6 97 0.0033 29.7 14.5 188 237-442 38-244 (293)
19 3ipi_A Geranyltranstransferase 43.9 39 0.0013 32.9 6.6 117 323-452 153-279 (295)
20 3ts7_A Geranyltranstransferase 38.2 94 0.0032 30.6 8.4 97 321-428 172-281 (324)
21 3oyr_A Trans-isoprenyl diphosp 36.7 2.8E+02 0.0097 27.3 11.8 61 322-387 177-239 (345)
22 3p8r_A Geranyltranstransferase 36.6 68 0.0023 31.2 7.0 98 321-429 172-282 (302)
23 3p8l_A Geranyltranstransferase 36.4 79 0.0027 30.8 7.5 97 321-429 170-279 (302)
24 4f62_A Geranyltranstransferase 35.8 90 0.0031 30.6 7.8 98 321-429 165-275 (317)
25 1rtr_A Geranyltranstransferase 30.0 91 0.0031 30.2 6.7 97 321-429 162-271 (301)
26 3lsn_A Geranyltranstransferase 28.3 94 0.0032 30.3 6.4 98 321-428 166-275 (304)
27 3uca_A Geranyltranstransferase 27.8 1.2E+02 0.0041 29.8 7.2 95 323-429 197-304 (324)
28 3lmd_A Geranylgeranyl pyrophos 26.8 1.6E+02 0.0056 29.3 8.0 76 324-405 187-275 (360)
29 3mzv_A Decaprenyl diphosphate 26.6 4.6E+02 0.016 25.6 12.8 79 321-405 164-255 (341)
30 3lom_A Geranyltranstransferase 26.0 97 0.0033 30.3 6.1 96 323-428 175-282 (313)
31 3rmg_A Octaprenyl-diphosphate 25.0 3.2E+02 0.011 26.7 9.8 60 323-387 160-221 (334)
32 3pde_A Farnesyl-diphosphate sy 24.7 2E+02 0.0067 28.1 8.0 96 321-428 169-277 (309)
33 3fau_A NEDD4-binding protein 2 22.9 66 0.0023 24.6 3.4 23 405-427 6-28 (82)
34 3apz_A Geranyl diphosphate syn 22.5 2.9E+02 0.0098 27.1 8.9 60 323-387 180-241 (348)
35 3pko_A Geranylgeranyl pyrophos 22.3 2.7E+02 0.0092 27.3 8.6 77 322-404 169-258 (334)
36 2j1p_A Geranylgeranyl pyrophos 20.0 1.1E+02 0.0036 29.6 5.0 92 323-429 179-272 (293)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=9.5e-154 Score=1231.98 Aligned_cols=471 Identities=53% Similarity=0.932 Sum_probs=446.2
Q ss_pred CCCccchhhhhHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccCCCCChhHHHHHHHHhhcCCccccccccccccccc
Q 041926 5 DNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDID 84 (483)
Q Consensus 5 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~i~~~~~~~dl~~~al~FRLLR~hGy~vs~dvf~~F~d~~ 84 (483)
..|++++|+|||+||||||+|||++||+++|++||+. + . ..+.||++|||+|||||||||+||||||++|+|++
T Consensus 67 ~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~--~---~-~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~ 140 (554)
T 3g4d_A 67 MANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN--N---N-DAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQ 140 (554)
T ss_dssp CSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS--C---C-CTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTT
T ss_pred ccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc--c---C-CCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccC
Confidence 4689999999999999999999999999999999986 1 2 13379999999999999999999999999999999
Q ss_pred cccccccccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhhhcCCCchHHHHHHhcCCCccCCchhhHHhhhhh
Q 041926 85 GNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS 164 (483)
Q Consensus 85 g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~r~e~r~yI~ 164 (483)
|+|++++.+||+||||||||||+++|||+|||||++||++||++.++++ +++|+++|+|||++|||+++||+|||+||+
T Consensus 141 g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~ 219 (554)
T 3g4d_A 141 GNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASL-DHPLSEEVSHALKQSIRRGLPRVEARHYLS 219 (554)
T ss_dssp SSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHH
T ss_pred CCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHhCCCccCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998777 788999999999999999999999999999
Q ss_pred hcCCCCcCcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhHHHHHh
Q 041926 165 IYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAK 244 (483)
Q Consensus 165 ~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri~~aK 244 (483)
+|++++++|++||||||||||+||++||+||++++||||++||.++||| +|||++|||||++|++|||+||.+|+++||
T Consensus 220 ~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~f-aRdr~ve~yfw~~~~~feP~~s~~R~~~aK 298 (554)
T 3g4d_A 220 VYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPY-ARDRVVEGYFWISGVYFEPQYSLGRKMLTK 298 (554)
T ss_dssp HHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTT-CCCCHHHHHHHHHHHCCSGGGHHHHHHHHH
T ss_pred HhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCc-hHHHHHHHHHHHHHhhCCccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999889999 999999999999999999999999999999
Q ss_pred hhhhhhhccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHh----
Q 041926 245 VFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEA---- 320 (483)
Q Consensus 245 ~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~e~---- 320 (483)
+++|++++||+||+|||+|||++||+||+|||++++++||+|||+||.+|+++++|++.++.++||.++++|++++
T Consensus 299 ~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l 378 (554)
T 3g4d_A 299 VIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRL 378 (554)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988899988888888776
Q ss_pred -------------CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhh
Q 041926 321 -------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKF 387 (483)
Q Consensus 321 -------------g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~ 387 (483)
||+||+||||+||.+|+|+++++++++++||+.+|+|+++|++++|+|+++++.|+||+|||+|+++
T Consensus 379 ~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~ 458 (554)
T 3g4d_A 379 AQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKF 458 (554)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCCch
Q 041926 388 EQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAV 467 (483)
Q Consensus 388 E~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~ 467 (483)
|+++|+++|+|+|||+|+|+|+|+|++++++||+++||+||++|++++++|++|+++++|+||++++||+++||||.|+.
T Consensus 459 E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~ 538 (554)
T 3g4d_A 459 KHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGK 538 (554)
T ss_dssp ------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCH
T ss_pred hhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999977
Q ss_pred hHHHHHHhhhccccCC
Q 041926 468 VLKDFVASLLINPVSI 483 (483)
Q Consensus 468 ~~k~~i~~ll~~pi~i 483 (483)
.+|++|++||++|||+
T Consensus 539 ~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 539 AAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHhcCCCCC
Confidence 8999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=5.2e-153 Score=1225.36 Aligned_cols=469 Identities=50% Similarity=0.888 Sum_probs=451.0
Q ss_pred CCCccchhhhhHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccCCCCChhHHHHHHHHhhcCCccccccccccccccc
Q 041926 5 DNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDID 84 (483)
Q Consensus 5 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~i~~~~~~~dl~~~al~FRLLR~hGy~vs~dvf~~F~d~~ 84 (483)
..|++++|+|||+||||||+|||++||+++|++||+.|. .+.||++|||+|||||||||+||||||++|+|++
T Consensus 63 ~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~-------~~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~ 135 (550)
T 3m00_A 63 GMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS-------NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDEN 135 (550)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHCC-------CCSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTT
T ss_pred ccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhcc-------cCCCHHHHHHHHHHHHhcCCCCChHHhhhccccC
Confidence 468999999999999999999999999999999999862 2369999999999999999999999999999999
Q ss_pred cccccccccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhhhcCCCchHHHHHHhcCCCccCCchhhHHhhhhh
Q 041926 85 GNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS 164 (483)
Q Consensus 85 g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~r~e~r~yI~ 164 (483)
|+|++++.+||+||||||||||+++|||+|||||++||++||++.++++ +++|+++|+|||++|||+++||+|||+||+
T Consensus 136 G~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~ 214 (550)
T 3m00_A 136 GKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL-KSPLREQVTHALEQCLHKGVPRVETRFFIS 214 (550)
T ss_dssp SCBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGGGC-CTTHHHHHHHHHHSCSTTSCHHHHHHHHHH
T ss_pred CCccccchhchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcc-CccHHHHHHHHhCCCccCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998777 788999999999999999999999999999
Q ss_pred -hcCCCCcCcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhHHHHH
Q 041926 165 -IYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLA 243 (483)
Q Consensus 165 -~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri~~a 243 (483)
+|++++.+|++||||||||||+||++||+||++++||||++||.++||| +|||++|||||++|++|||+||.+|+++|
T Consensus 215 ~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~f-aRdr~ve~yfw~~~~~feP~~s~~R~~~a 293 (550)
T 3m00_A 215 SIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPY-ARDRVVECYFWTLGVYFEPQYSQARVMLV 293 (550)
T ss_dssp HTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTT-SCCCHHHHHHHHHHHCCSGGGHHHHHHHH
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCc-HHHhHHHHHHHHHHhhCCccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999889999 99999999999999999999999999999
Q ss_pred hhhhhhhhccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHh---
Q 041926 244 KVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEA--- 320 (483)
Q Consensus 244 K~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~e~--- 320 (483)
|+++++|++||+||+|||+|||++||+||+|||++++++||+|||+||.+|+++++|++.++.++||.++++|++++
T Consensus 294 K~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~ 373 (550)
T 3m00_A 294 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE 373 (550)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899888888887766
Q ss_pred --------------CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchh
Q 041926 321 --------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHK 386 (483)
Q Consensus 321 --------------g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~ 386 (483)
||+||+||||+||.+|+|++++++++++|+ +.+|+++++|+.++|+|++++++|+||+|||+|++
T Consensus 374 l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k 452 (550)
T 3m00_A 374 IVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYE 452 (550)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHH
Confidence 999999999999999999999999998887 67999999999999999999999999999999999
Q ss_pred hhhhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCC
Q 041926 387 FEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-DGYTHS 465 (483)
Q Consensus 387 ~E~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-D~~t~~ 465 (483)
+|+++|+++|+|+|||+|+|+|+|+|++++++||+++||+||++|++++++|++|+++++|+||++++||+++ ||||.|
T Consensus 453 ~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~ 532 (550)
T 3m00_A 453 VEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHP 532 (550)
T ss_dssp HHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CC
T ss_pred HHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999988999999999999999999999998 999999
Q ss_pred chhHHHHHHhhhccccCC
Q 041926 466 AVVLKDFVASLLINPVSI 483 (483)
Q Consensus 466 ~~~~k~~i~~ll~~pi~i 483 (483)
+..||++|++||++|||+
T Consensus 533 ~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 533 EKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHTCCCCC
T ss_pred cHHHHHHHHHHhhCCCCC
Confidence 778999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=3.4e-153 Score=1229.30 Aligned_cols=473 Identities=39% Similarity=0.640 Sum_probs=449.4
Q ss_pred CC-CccchhhhhHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccCCCCChhHHHHHHHHhhcCCcccccccccccccc
Q 041926 5 DN-KPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDI 83 (483)
Q Consensus 5 ~~-d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~i~~~~~~~dl~~~al~FRLLR~hGy~vs~dvf~~F~d~ 83 (483)
.. +++++|+|||+||||||+|||++||+++|++||+. .+++++ ...||++|||+|||||||||+||||||++|+|+
T Consensus 60 ~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~-~~~~~~--~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~ 136 (555)
T 3n0f_A 60 EKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSS-GGFDGV--TKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQ 136 (555)
T ss_dssp TTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHT-CHHHHH--TTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhh-cccccc--ccCCHHHHHHHHHHHHhcCCCcChHHHhccccc
Confidence 45 79999999999999999999999999999999984 111223 346999999999999999999999999999999
Q ss_pred ccccccccccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhh-hcCCCchHHHHHHhcCCCccCCchhhHHhhh
Q 041926 84 DGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIAT-HQISSPLAEQVKHALFQPIHKGVQRLEARHY 162 (483)
Q Consensus 84 ~g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~-~~~~~~l~~~V~~aL~~P~~~~~~r~e~r~y 162 (483)
+|+|++++.+||+||||||||||+++|||+|||||++||++||++.+. .+ +++|+++|+|||++|||+++||+|||+|
T Consensus 137 ~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~-~~~l~~~V~~aL~~P~~~~l~Rlear~y 215 (555)
T 3n0f_A 137 NGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKI-GKELAEQVNHALELPLHRRTQRLEAVWS 215 (555)
T ss_dssp TSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHTCCHHHH-CHHHHHHHHHHHHSCTTTSCHHHHHHHH
T ss_pred CccchhhhhhhhHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccC-CchHHHHHHHHhcCCcccCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999765 55 7789999999999999999999999999
Q ss_pred hhhcCCCCcCcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhHHHH
Q 041926 163 ISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLL 242 (483)
Q Consensus 163 I~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri~~ 242 (483)
|++|++++++|++||||||||||+||++||+||++++||||++||.++||| +|||++|||||++|++|||+||.+|+++
T Consensus 216 I~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~f-aRdr~ve~yfw~~~~~feP~~s~~R~~~ 294 (555)
T 3n0f_A 216 IEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHF-ARDRLIESFYWAVGVAFEPQYSDCRNSV 294 (555)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTT-CCCCHHHHHHHHHHHCCSGGGHHHHHHH
T ss_pred HHHhcccccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCc-hhhHHHHHHHHHHHhhcCccchHHHHHH
Confidence 999999999999999999999999999999999999999999999889999 9999999999999999999999999999
Q ss_pred HhhhhhhhhccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHh--
Q 041926 243 AKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEA-- 320 (483)
Q Consensus 243 aK~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~e~-- 320 (483)
||++++++++||+||+|||+|||++||+||+|||++++++||+|||+||.+|+++++|++.++.+++|.++++|++++
T Consensus 295 aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~ 374 (555)
T 3n0f_A 295 AKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWA 374 (555)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998887766666777777665
Q ss_pred ---------------CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccch
Q 041926 321 ---------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSH 385 (483)
Q Consensus 321 ---------------g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~ 385 (483)
||+||+||||+||.+|+|+++++++++++||+.+|+|+++|+.++|+|++++++|+||+|||+|+
T Consensus 375 ~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~ 454 (555)
T 3n0f_A 375 DLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASA 454 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCC
Q 041926 386 KFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHS 465 (483)
Q Consensus 386 ~~E~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~ 465 (483)
++|+++|+++|+|+|||+|+|+|+|+|++++++||+++||+||++|++++++|++|+++++|+||++++||+++||||.|
T Consensus 455 ~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~ 534 (555)
T 3n0f_A 455 SAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSP 534 (555)
T ss_dssp HHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCH
T ss_pred hhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred chhHHHHHHhhhccccC
Q 041926 466 AVVLKDFVASLLINPVS 482 (483)
Q Consensus 466 ~~~~k~~i~~ll~~pi~ 482 (483)
+..||++|++||++|||
T Consensus 535 ~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 535 DELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHhcCCC
Confidence 77899999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=2.3e-148 Score=1197.68 Aligned_cols=477 Identities=33% Similarity=0.590 Sum_probs=456.3
Q ss_pred CCCccchhhhhHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccCC-CCChhHHHHHHHHhhcCCcccccccccccccc
Q 041926 5 DNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNE-NDGLYYISLQFRLLRGNGYRISADVFNKFRDI 83 (483)
Q Consensus 5 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~i~~~~~-~~dl~~~al~FRLLR~hGy~vs~dvf~~F~d~ 83 (483)
+.|++++|+|||+||||||+|||++||+++|++||+.|.++++|... ..||++|||+|||||||||+||||||++|||+
T Consensus 47 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~ 126 (543)
T 2ong_A 47 ETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNE 126 (543)
T ss_dssp CCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred ccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCC
Confidence 34899999999999999999999999999999999998665544112 46999999999999999999999999999999
Q ss_pred ccccccccccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhhh-cCCCchHHHHHHhcCCCccCCchhhHHhhh
Q 041926 84 DGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATH-QISSPLAEQVKHALFQPIHKGVQRLEARHY 162 (483)
Q Consensus 84 ~g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~-~~~~~l~~~V~~aL~~P~~~~~~r~e~r~y 162 (483)
+|+|++++++||+||||||||||+++|||+|||||++||++||++++++ +.+++|+++|+|||++|||+++||+|||+|
T Consensus 127 ~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~y 206 (543)
T 2ong_A 127 EGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVW 206 (543)
T ss_dssp TSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHH
T ss_pred CCCccchhhhccHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876 436789999999999999999999999999
Q ss_pred hhhcCCCCcCcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhHHHH
Q 041926 163 ISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLL 242 (483)
Q Consensus 163 I~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri~~ 242 (483)
|++|++++++|++||||||||||+||++||+||++++|||+++||.+++|| +|||++|||||++|++|||++|.+|+++
T Consensus 207 I~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~f-aRdR~ve~Yfw~~a~~feP~~s~~Rl~~ 285 (543)
T 2ong_A 207 IEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPF-ARDRLVECYFWNTGIIEPRQHASARIMM 285 (543)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCS-SCCCHHHHHHTHHHHTCSTTCHHHHHHH
T ss_pred HHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccH-HHHHHHHHHHHHHHhccCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999888999 9999999999999999999999999999
Q ss_pred HhhhhhhhhccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHh--
Q 041926 243 AKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEA-- 320 (483)
Q Consensus 243 aK~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~e~-- 320 (483)
||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+++++++|++.++.+.++.++++|++++
T Consensus 286 aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~ 365 (543)
T 2ong_A 286 GKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWV 365 (543)
T ss_dssp HHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888776666666766655
Q ss_pred ---------------CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccch
Q 041926 321 ---------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSH 385 (483)
Q Consensus 321 ---------------g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~ 385 (483)
||+||+||||+||.+|+|+++++++++++||+.+|+++++|+.++|+++++++.|+||+|||+|+
T Consensus 366 ~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~ 445 (543)
T 2ong_A 366 DLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTS 445 (543)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCC
Q 041926 386 KFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEEC-LRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTH 464 (483)
Q Consensus 386 ~~E~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~-l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~ 464 (483)
++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+||+++ ++++++|++|+++++|+||+++++|+++||||.
T Consensus 446 ~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~ 525 (543)
T 2ong_A 446 VEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGT 525 (543)
T ss_dssp HHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSS
T ss_pred hhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCC
Confidence 9999999999999999999999999999999999999999999999 998889999999999999999999999999999
Q ss_pred CchhHHHHHHhhhccccC
Q 041926 465 SAVVLKDFVASLLINPVS 482 (483)
Q Consensus 465 ~~~~~k~~i~~ll~~pi~ 482 (483)
|+..+|++|++||++|||
T Consensus 526 ~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 526 QHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp SCTTHHHHHHHHHTSCC-
T ss_pred ccHHHHHHHHHHhccCCC
Confidence 977899999999999996
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.9e-147 Score=1190.15 Aligned_cols=478 Identities=35% Similarity=0.640 Sum_probs=439.6
Q ss_pred CCCCccchhhhhHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccCCCCChhHHHHHHHHhhcCCcccccccccccccc
Q 041926 4 ADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDI 83 (483)
Q Consensus 4 ~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~i~~~~~~~dl~~~al~FRLLR~hGy~vs~dvf~~F~d~ 83 (483)
++.|++++|+|||+||||||+|||++||+++|++||+.|.+.........||++|||+|||||||||+||||||++|||+
T Consensus 50 ~~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~ 129 (549)
T 1n1b_A 50 EKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNE 129 (549)
T ss_dssp SCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cccCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCC
Confidence 34589999999999999999999999999999999997622100000146999999999999999999999999999999
Q ss_pred cc-ccccccccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhhh---cCCCchHHHHHHhcCCCccCCchhhHH
Q 041926 84 DG-NFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATH---QISSPLAEQVKHALFQPIHKGVQRLEA 159 (483)
Q Consensus 84 ~g-~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---~~~~~l~~~V~~aL~~P~~~~~~r~e~ 159 (483)
+| +|++++++||+||||||||||+++|||+|||||++||++||++++++ +.+++|+++|+|||++|||+++||+||
T Consensus 130 ~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlea 209 (549)
T 1n1b_A 130 KGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEA 209 (549)
T ss_dssp TSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSH
T ss_pred CCCccchhhhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHH
Confidence 99 99999999999999999999999999999999999999999999875 336789999999999999999999999
Q ss_pred hhhhhhcCCCCcCcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhH
Q 041926 160 RHYISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGR 239 (483)
Q Consensus 160 r~yI~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~R 239 (483)
|+||++|++++++|++||||||||||+||++||+||++++|||+++||.+++|| +|||++|||||++|++|||++|.+|
T Consensus 210 r~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~f-aRdR~ve~Yfw~~a~~feP~~s~~R 288 (549)
T 1n1b_A 210 RWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPF-VRDRLVESFFWAVGMFEPHQHGYQR 288 (549)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTT-SCCCHHHHHHHHHHHCCSTTCHHHH
T ss_pred HHHHHHhcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccH-HHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 999999999999999999999999999999999999999999999999888999 9999999999999999999999999
Q ss_pred HHHHhhhhhhhhccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 041926 240 RLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKE 319 (483)
Q Consensus 240 i~~aK~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~e 319 (483)
+++||+++|+|++||+||+|||++|++.||+||+|||.++++++|+|||+||.+++++++|++.++.+.++.++++++++
T Consensus 289 l~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~ 368 (549)
T 1n1b_A 289 KMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRK 368 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988876666566666665
Q ss_pred h-----------------CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhh-HhhccCchHHHHHHhhhhhhccC
Q 041926 320 A-----------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKES-FEWSLSNPRVIRASSVAARLMND 381 (483)
Q Consensus 320 ~-----------------g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~-~e~~~~~~~i~~~~~~i~RL~ND 381 (483)
+ ||+||+||||+||.+|+|+++++++++++||+.+|+++ ++|+.++|+++++++.|+||+||
T Consensus 369 ~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~ND 448 (549)
T 1n1b_A 369 SVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDD 448 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcc
Confidence 5 99999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccchhhhhhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCC
Q 041926 382 MVSHKFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDG 461 (483)
Q Consensus 382 i~S~~~E~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~ 461 (483)
|+|+++|+++|+++|+|+|||+|+|+|+|+|++++++||+++||+||+++++++++|++|+++++|+||++++||+++||
T Consensus 449 i~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg 528 (549)
T 1n1b_A 449 LGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDG 528 (549)
T ss_dssp HC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred cchhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCC
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCCCchhHHHHHHhhhccccC
Q 041926 462 YTHSAVVLKDFVASLLINPVS 482 (483)
Q Consensus 462 ~t~~~~~~k~~i~~ll~~pi~ 482 (483)
||.|+..+|++|++||++|||
T Consensus 529 ~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 529 FGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp C----CHHHHHHHHHHTSCCC
T ss_pred CCCCcHHHHHHHHHHhcCCCC
Confidence 999987899999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=1.5e-146 Score=1186.61 Aligned_cols=470 Identities=36% Similarity=0.611 Sum_probs=430.6
Q ss_pred CCCccchhhhhHHHHHhCCccccHHHHHHHHHHHH-hhcCCCccccCCCCChhHHHHHHHHhhcCCcccccccccccccc
Q 041926 5 DNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVH-QAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDI 83 (483)
Q Consensus 5 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~-~~~~~~i~~~~~~~dl~~~al~FRLLR~hGy~vs~dvf~~F~d~ 83 (483)
+.|++++|+|||+||||||+|||++||+++|++|| +.+.+ ...||++|||+|||||||||+||||||++|||+
T Consensus 80 ~~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~------~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~ 153 (569)
T 2j5c_A 80 EVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEI------DERDLYSTALRFRLLRQYDFSVSQEVFDCFKNA 153 (569)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCS------CTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCS
T ss_pred cccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCc------ccCChhhhhHHhHHHHhcCCCcCHHHHhcccCC
Confidence 34899999999999999999999999999999999 76421 346999999999999999999999999999999
Q ss_pred cc-ccccccccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhhhcCCCchHHHHHHhcCCCccCCchhhHHhhh
Q 041926 84 DG-NFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHY 162 (483)
Q Consensus 84 ~g-~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~r~e~r~y 162 (483)
+| +|++++++||+||||||||||+++|||+|||||++||++||+++++++.+++|+++|+|||++|||+++||+|||+|
T Consensus 154 ~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~y 233 (569)
T 2j5c_A 154 KGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSF 233 (569)
T ss_dssp SSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHH
T ss_pred CCCccccchhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999998876546789999999999999999999999999
Q ss_pred hhhcCCCCcCcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhHHHH
Q 041926 163 ISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLL 242 (483)
Q Consensus 163 I~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri~~ 242 (483)
|++|++++++|++||||||||||+||++||+||++++|||+++||.+++|| +|||++|||||++|++|||++|.+|+++
T Consensus 234 I~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~f-aRdR~ve~Yfw~~a~~feP~~S~~Rl~~ 312 (569)
T 2j5c_A 234 IDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPF-VRDRIVECYYWTTGVVERRQHGYERIML 312 (569)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC---CCCHHHHHHHHHHHCCCGGGHHHHHHH
T ss_pred HHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999888999 9999999999999999999999999999
Q ss_pred HhhhhhhhhccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHh--
Q 041926 243 AKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEA-- 320 (483)
Q Consensus 243 aK~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~e~-- 320 (483)
||+++|+|++||+||+|||++|++.||+||+|||.++++++|+|||+||.+|+++++|++.++.+.++.++++|++++
T Consensus 313 aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~ 392 (569)
T 2j5c_A 313 TKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWV 392 (569)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888776666667766655
Q ss_pred ---------------CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccch
Q 041926 321 ---------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSH 385 (483)
Q Consensus 321 ---------------g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~ 385 (483)
||+||+||||+||.+|+|+++++++++++||+.+|+++++|+.++|+++++++.|+||+|||+|+
T Consensus 393 ~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~ 472 (569)
T 2j5c_A 393 GLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTS 472 (569)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCC
Q 041926 386 KFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-DGYTH 464 (483)
Q Consensus 386 ~~E~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-D~~t~ 464 (483)
++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+||++|++ +++|++|+++++|+||+++++|+++ ||||.
T Consensus 473 ~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~ 551 (569)
T 2j5c_A 473 LDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGM 551 (569)
T ss_dssp ---------CCHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-
T ss_pred hhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCC
Confidence 999999999999999999999999999999999999999999999999 8899999999999999999999999 99999
Q ss_pred CchhHHHHHHhhhccccC
Q 041926 465 SAVVLKDFVASLLINPVS 482 (483)
Q Consensus 465 ~~~~~k~~i~~ll~~pi~ 482 (483)
|+..+|++|++||++|||
T Consensus 552 ~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 552 QHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp CCCHHHHHHHHHHTSCCC
T ss_pred chHHHHHHHHHHhccCCC
Confidence 977899999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=6.1e-142 Score=1186.01 Aligned_cols=477 Identities=34% Similarity=0.573 Sum_probs=440.8
Q ss_pred CCCccchhhhhHHHHHhCCccccHHHHHHHHHHHHhhcCC-CccccCC--CCChhHHHHHHHHhhcCCcccccccccccc
Q 041926 5 DNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQD-SDLCVNE--NDGLYYISLQFRLLRGNGYRISADVFNKFR 81 (483)
Q Consensus 5 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~-~i~~~~~--~~dl~~~al~FRLLR~hGy~vs~dvf~~F~ 81 (483)
..|++++|++||+||||||+|||++||+++|++||+.|.+ ||+++.. ..||++|||+|||||||||+||||||++|+
T Consensus 295 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 374 (817)
T 3sdr_A 295 PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFK 374 (817)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHh
Confidence 3588999999999999999999999999999999999854 6665211 359999999999999999999999999999
Q ss_pred cccccccccc---ccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhhh---c----CCCchHHHHHHhcCCCcc
Q 041926 82 DIDGNFKPSL---AKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATH---Q----ISSPLAEQVKHALFQPIH 151 (483)
Q Consensus 82 d~~g~F~~~~---~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---~----~~~~l~~~V~~aL~~P~~ 151 (483)
|++|+|++++ .+||+||||||||||+++|||+|||||++||++||++.+.+ + .+++|+++|+|||++|||
T Consensus 375 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~ 454 (817)
T 3sdr_A 375 DANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWH 454 (817)
T ss_dssp CC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCST
T ss_pred hcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchh
Confidence 9999999865 69999999999999999999999999999999999998753 1 147799999999999999
Q ss_pred CCchhhHHhhhhhhcCCCCc------------CcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHH
Q 041926 152 KGVQRLEARHYISIYPEESS------------HNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRI 219 (483)
Q Consensus 152 ~~~~r~e~r~yI~~Y~~~~~------------~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ 219 (483)
+++||+|||+||++|++++. +|++||||||||||+||++||+||++++||||++|+ .++|| +|||+
T Consensus 455 ~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~f-aRdr~ 532 (817)
T 3sdr_A 455 ASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTF-ARERP 532 (817)
T ss_dssp TCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTT-SCCCH
T ss_pred ccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCcc-HHHHH
Confidence 99999999999999998875 499999999999999999999999999999999999 59999 99999
Q ss_pred HHHHHHHhhhccCCCcchhHHHHHhhhhhhhhccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHH
Q 041926 220 AECYFWAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYS 299 (483)
Q Consensus 220 ve~yfw~~a~~feP~~s~~Ri~~aK~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~ 299 (483)
+|||||++|++|||+||.+|+++||++++++++||+||+|||+|||++||+||+|||.+++++||+|||+||.+|+++++
T Consensus 533 ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~ 612 (817)
T 3sdr_A 533 LEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVH 612 (817)
T ss_dssp HHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHh-----------------CCCCCHHHHHHhhhccccchh-HHHHHHHhcCCCCchhhHhh
Q 041926 300 EAEKDLASQGKLYHLHYAKEA-----------------NYIPSVDEYMTVASVTSGYPM-LSTTSFVGMGDIVTKESFEW 361 (483)
Q Consensus 300 e~~~~~~~~~~~~~~~~l~e~-----------------g~vPT~eEYl~~~~vSsg~~~-~~~~~~~~~g~~l~~e~~e~ 361 (483)
|++.++.+++|.++++|++++ ||+||+||||+||.+|+|+++ +++++++++|+.+|+|+++|
T Consensus 613 e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~ 692 (817)
T 3sdr_A 613 EVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEK 692 (817)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHT
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhc
Confidence 998887765455667777666 999999999999999999999 88888999999999999999
Q ss_pred cc--CchHHHHHHhhhhhhccCccchhhhhhcCCccchhhHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 041926 362 SL--SNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQY-GATEEEACNEFRKQVSNAWKDVNEECLRPTVVP 438 (483)
Q Consensus 362 ~~--~~~~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~-g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p 438 (483)
+. +.|+|+++++.|+||+|||+|+++|+++|+++|+|+|||+|+ |+|+|+|++++++||+++||+||++|++++++|
T Consensus 693 ~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p 772 (817)
T 3sdr_A 693 VDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVP 772 (817)
T ss_dssp TCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred ccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 65 445999999999999999999999999999999999999999 799999999999999999999999999988899
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCchhHHHHHHhhhccccCC
Q 041926 439 MPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLINPVSI 483 (483)
Q Consensus 439 ~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pi~i 483 (483)
++|+++++|+||++++||+++||||.|+..||++|++||++||++
T Consensus 773 ~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 773 FACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999778999999999999985
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.8e-141 Score=1175.15 Aligned_cols=474 Identities=31% Similarity=0.567 Sum_probs=440.6
Q ss_pred CCCccchhhhhHHHHHhCCccccHHHHHHHHHHHHhhcCC-CccccCC--CCChhHHHHHHHHhhcCCcccccccccccc
Q 041926 5 DNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQD-SDLCVNE--NDGLYYISLQFRLLRGNGYRISADVFNKFR 81 (483)
Q Consensus 5 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~-~i~~~~~--~~dl~~~al~FRLLR~hGy~vs~dvf~~F~ 81 (483)
..|++++|++||+||||||+|||++||+++|++||+.|.+ ||+++.. ..||++|||+|||||||||+||||||++|+
T Consensus 243 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 322 (764)
T 3p5p_A 243 SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFK 322 (764)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhh
Confidence 4588999999999999999999999999999999999854 6665211 359999999999999999999999999999
Q ss_pred ccccccccc---cccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhhh--cCCCchHHHHHHhcCCCccCCchh
Q 041926 82 DIDGNFKPS---LAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATH--QISSPLAEQVKHALFQPIHKGVQR 156 (483)
Q Consensus 82 d~~g~F~~~---~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~r 156 (483)
|++|+|+++ +.+||+||||||||||+++|||+|||||++||++||++.+++ ..+++|+++|+|||++|||+++||
T Consensus 323 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~R 402 (764)
T 3p5p_A 323 DENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPR 402 (764)
T ss_dssp CTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHH
T ss_pred cCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchH
Confidence 999999974 589999999999999999999999999999999999998763 227789999999999999999999
Q ss_pred hHHhhhhhhcCCCCc------------CcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Q 041926 157 LEARHYISIYPEESS------------HNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYF 224 (483)
Q Consensus 157 ~e~r~yI~~Y~~~~~------------~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ve~yf 224 (483)
+|||+||++|++++. +|++||||||||||+||++||+||++++||||++|+ .++|| +|||++||||
T Consensus 403 lear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~f-aRdr~ve~Yf 480 (764)
T 3p5p_A 403 LEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINF-TRHRVAEVYF 480 (764)
T ss_dssp HHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTC-CHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCcc-HHHHHHHHHH
Confidence 999999999998866 499999999999999999999999999999999999 59999 9999999999
Q ss_pred HHhhhccCCCcchhHHHHHhhhhhhhhccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHH
Q 041926 225 WAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKD 304 (483)
Q Consensus 225 w~~a~~feP~~s~~Ri~~aK~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~ 304 (483)
|++| |||+||.+|+++||+++|++++||+||+|||+|||++||+||+|||.+++++||+|||+||.+|+++++|++.+
T Consensus 481 w~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~ 558 (764)
T 3p5p_A 481 SSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNND 558 (764)
T ss_dssp HTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHh-cCCchHHHHHHHh-----------------CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCch
Q 041926 305 LAS-QGKLYHLHYAKEA-----------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNP 366 (483)
Q Consensus 305 ~~~-~~~~~~~~~l~e~-----------------g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~ 366 (483)
+.+ +|+ ++++|++++ ||+||+||||+||.+|+|++++++++++++|+.+|+|+++|+..+|
T Consensus 559 ~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~ 637 (764)
T 3p5p_A 559 VVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPS 637 (764)
T ss_dssp HHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTS
T ss_pred HHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhH
Confidence 765 665 667777665 9999999999999999999999999999999999999999966669
Q ss_pred HHHHHHhhhhhhccCccchhhhhhcCCccchhhHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCHHHHHH
Q 041926 367 RVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQY-GATEEEACNEFRKQVSNAWKDVNEECLR-PTVVPMPLLMR 444 (483)
Q Consensus 367 ~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~-g~s~eeA~~~i~~~i~~~wk~ln~e~l~-~~~~p~~~~~~ 444 (483)
+|+++++.|+||+|||+|+++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++ ++++|++|+++
T Consensus 638 ~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~ 717 (764)
T 3p5p_A 638 NMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSF 717 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHH
T ss_pred HHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999 7999999999999999999999999997 77899999999
Q ss_pred HHHHHhhhhhhcccCCCCCCCchhHHHHHHhhhccccCC
Q 041926 445 ILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLINPVSI 483 (483)
Q Consensus 445 ~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pi~i 483 (483)
++|+||++++||+++||||.|+.+||++|++||++||++
T Consensus 718 ~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 718 IFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 999999999999999999998767999999999999974
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.7e-141 Score=1178.35 Aligned_cols=474 Identities=32% Similarity=0.562 Sum_probs=443.8
Q ss_pred CCCccchhhhhHHHHHhCCccccHHHHHHHHHHHHhhcCC-CccccCC--CCChhHHHHHHHHhhcCCcccccccccccc
Q 041926 5 DNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQD-SDLCVNE--NDGLYYISLQFRLLRGNGYRISADVFNKFR 81 (483)
Q Consensus 5 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~-~i~~~~~--~~dl~~~al~FRLLR~hGy~vs~dvf~~F~ 81 (483)
+.|++++|++||+||||||+|||++||+++|++||+.|.+ +|+++.+ ..||++|||+|||||||||+||||||++|+
T Consensus 267 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 346 (785)
T 3s9v_A 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFR 346 (785)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4588999999999999999999999999999999999854 5665211 359999999999999999999999999999
Q ss_pred cccccccccc---ccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhhh-------cCCCchHHHHHHhcCCCcc
Q 041926 82 DIDGNFKPSL---AKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATH-------QISSPLAEQVKHALFQPIH 151 (483)
Q Consensus 82 d~~g~F~~~~---~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~-------~~~~~l~~~V~~aL~~P~~ 151 (483)
|++|+|++++ .+||+||||||||||+++|||+|||||++||++||++.+.. ..+++|+++|+|||++|||
T Consensus 347 d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~ 426 (785)
T 3s9v_A 347 DENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWH 426 (785)
T ss_dssp CTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGG
T ss_pred hcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccc
Confidence 9999999866 69999999999999999999999999999999999998753 1267899999999999999
Q ss_pred CCchhhHHhhhhhhcCCCCc------------CcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHH
Q 041926 152 KGVQRLEARHYISIYPEESS------------HNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRI 219 (483)
Q Consensus 152 ~~~~r~e~r~yI~~Y~~~~~------------~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ 219 (483)
+++||+|||+||++|++++. +|++||||||||||+||++||+||++++||||++|+ .++|| +|||+
T Consensus 427 ~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~f-aRdr~ 504 (785)
T 3s9v_A 427 KSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNF-TRERV 504 (785)
T ss_dssp GCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSS-SCCCH
T ss_pred cCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCcc-HHHHH
Confidence 99999999999999998875 499999999999999999999999999999999999 69999 99999
Q ss_pred HHHHHHHhhhccCCCcchhHHHHHhhhhhhhhccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHH
Q 041926 220 AECYFWAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYS 299 (483)
Q Consensus 220 ve~yfw~~a~~feP~~s~~Ri~~aK~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~ 299 (483)
+|||||++|++|||+||.+|+++||++++++++||+||+|||+|||++||+||+|||.+++++||+|||+||.+|+++++
T Consensus 505 ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~n 584 (785)
T 3s9v_A 505 TEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFN 584 (785)
T ss_dssp HHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-cCCchHHHHHHHh-----------------CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhh
Q 041926 300 EAEKDLAS-QGKLYHLHYAKEA-----------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEW 361 (483)
Q Consensus 300 e~~~~~~~-~~~~~~~~~l~e~-----------------g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~ 361 (483)
|++.++.+ +|+ ++++|++++ ||+||+||||+||.+|+|+++++++++++||+.+|+|+++|
T Consensus 585 ei~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~ 663 (785)
T 3s9v_A 585 DIAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSK 663 (785)
T ss_dssp HHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTT
T ss_pred HHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhc
Confidence 99887765 665 667777665 99999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHhhhhhhccCccchhhhhhcCCccchhhHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHH
Q 041926 362 SLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQY-GATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMP 440 (483)
Q Consensus 362 ~~~~~~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~-g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~ 440 (483)
+..+|+|+++++.|+||+|||+|+++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++++ +|++
T Consensus 664 ~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~ 742 (785)
T 3s9v_A 664 IDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPDI 742 (785)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHH
T ss_pred ccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHH
Confidence 66669999999999999999999999999999999999999999 999999999999999999999999999877 9999
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCch-hHHHHHHhhhccccC
Q 041926 441 LLMRILNLTRFLDVVYRFEDGYTHSAV-VLKDFVASLLINPVS 482 (483)
Q Consensus 441 ~~~~~~n~aR~~~~~Y~~~D~~t~~~~-~~k~~i~~ll~~pi~ 482 (483)
|+++++|+||++++||+++||||.|+. ++|++|++||++||.
T Consensus 743 ~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 743 YKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 999999999999999999999999975 799999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=7e-108 Score=898.26 Aligned_cols=434 Identities=22% Similarity=0.314 Sum_probs=368.6
Q ss_pred CCCccchhhhhHHHHHhCCccccHHHHHHHHHHHHhhcC-CCccccCC--CCChhHHHHHHHHhhcCCcccccccccccc
Q 041926 5 DNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQ-DSDLCVNE--NDGLYYISLQFRLLRGNGYRISADVFNKFR 81 (483)
Q Consensus 5 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~-~~i~~~~~--~~dl~~~al~FRLLR~hGy~vs~dvf~~F~ 81 (483)
+.|++++|++||+||||||+|||++||+++|++||+.|. +++++..+ ..||++|||+|||||||||+||||||++|+
T Consensus 242 P~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~DvF~~Fk 321 (727)
T 3pya_A 242 PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFE 321 (727)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGGGGGGGE
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCHHHHHhcc
Confidence 368899999999999999999999999999999999984 45555211 359999999999999999999999999999
Q ss_pred ccccccccc---cccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhhh--c-----CCCchHHHHHHhcCCCcc
Q 041926 82 DIDGNFKPS---LAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATH--Q-----ISSPLAEQVKHALFQPIH 151 (483)
Q Consensus 82 d~~g~F~~~---~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--~-----~~~~l~~~V~~aL~~P~~ 151 (483)
++|+|++. +.+|++||||||||||+++|||+|||||++||++||++.+.. + .+++|+++|+|||++|||
T Consensus 322 -~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~ 400 (727)
T 3pya_A 322 -KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWY 400 (727)
T ss_dssp -ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGG
T ss_pred -CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHh
Confidence 88999853 468999999999999999999999999999999999998752 1 147899999999999999
Q ss_pred CCchhhHHhhhhhhcCCCCc-------------CcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHH
Q 041926 152 KGVQRLEARHYISIYPEESS-------------HNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDR 218 (483)
Q Consensus 152 ~~~~r~e~r~yI~~Y~~~~~-------------~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr 218 (483)
+++||+|||+||++|+++++ +|++||||||||||+||++||+||++++||||++|| .+||| +|||
T Consensus 401 ~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~f-aRdr 478 (727)
T 3pya_A 401 ASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRL-SEWGV-RRSE 478 (727)
T ss_dssp GCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG-GGGTC-CHHH
T ss_pred cCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCc-ccCCc-hhhH
Confidence 99999999999999997654 699999999999999999999999999999999999 56999 9999
Q ss_pred HHHHHHHHhhhccCCCcchhHHHHHhhhhhhhhccccccccCCHHHHHHHHHhccccccc---------cccc---Cchh
Q 041926 219 IAECYFWAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDIC---------AIDE---LPEY 286 (483)
Q Consensus 219 ~ve~yfw~~a~~feP~~s~~Ri~~aK~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~---------~~~~---lpey 286 (483)
++|||||++|++|||+||.+|+++||++++++++||+||+|| |||++||+||+|||.+ +++. +|+|
T Consensus 479 ~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~ 556 (727)
T 3pya_A 479 LLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGS 556 (727)
T ss_dssp HHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHH
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCc
Confidence 999999999999999999999999999999999999999999 9999999999999974 3333 3877
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHh--CCCCCHHHHHHhhhccc-cchhHHHHHHHhcCCCCchhhHhh
Q 041926 287 --MKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEA--NYIPSVDEYMTVASVTS-GYPMLSTTSFVGMGDIVTKESFEW 361 (483)
Q Consensus 287 --mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~e~--g~vPT~eEYl~~~~vSs-g~~~~~~~~~~~~g~~l~~e~~e~ 361 (483)
||+||.+|++++||++.++.+++|.++++|++++ .. +..|+.-+. .. |. +++.+..+..|..+++ ++.+
T Consensus 557 ~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~---l~s~~~Ea~-~~EAe-llv~~I~l~sG~~l~e-~l~~ 630 (727)
T 3pya_A 557 VQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDW---MEKWKLYGD-EGEGE-LMVKMIILMKNNDLTN-FFTH 630 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHHHHHSS-CCHHH-HHHHHHHHHSSSCGGG-GGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH---HHHHHHhcc-cccee-eeeeeeecCCCcchHh-hccC
Confidence 9999999999999998877765555778999887 00 111111110 00 22 4444444444888888 8877
Q ss_pred ccCchHHHHHHhhhhhhccCccchhhhhhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCH
Q 041926 362 SLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPT--VVPM 439 (483)
Q Consensus 362 ~~~~~~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~--~~p~ 439 (483)
+.+.+|.++++.|+||+||+.++++|+ .+++.+.|+..|++|++.+++++ .+|+
T Consensus 631 -~ey~~L~~ltn~icrllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~ 686 (727)
T 3pya_A 631 -THFVRLAEIINRICLPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKMVELALSESDTFRDV 686 (727)
T ss_dssp -HHHHHHHHHHHHHSCCCC------CHH-----------------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHH
T ss_pred -hhHHHHHHHHHHHhHHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 888899999999999999999999976 45788999999999999999754 6999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCchhHHHHHHhhhccccC
Q 041926 440 PLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLINPVS 482 (483)
Q Consensus 440 ~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pi~ 482 (483)
+| |+.++++.||.. ||++|. |..+|.++|++||.
T Consensus 687 ~~-----tf~~V~ksFYy~--ay~~p~--i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 687 SI-----TFLDVAKAFYYF--ALCGDH--LQTHISKVLFQKVG 720 (727)
T ss_dssp HH-----HHHHHHHHHHHH--HHHTTS--CHHHHHHHHHSCCC
T ss_pred cc-----cHHHHHHHHHhh--hcCCHH--HHHHHHHHHcCccc
Confidence 99 899999999985 999984 99999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=7.4e-47 Score=385.15 Aligned_cols=238 Identities=15% Similarity=0.133 Sum_probs=209.7
Q ss_pred HhhHHHHHHH-HHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhHH-HHHhhhhhhhhcccccccc--CCHHH
Q 041926 189 KLHQKELSDI-SKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRR-LLAKVFPMTSILDDIYDVY--GKFEE 264 (483)
Q Consensus 189 ~~hq~El~~l-~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri-~~aK~~~li~~iDD~yD~~--gt~eE 264 (483)
+.|.+|+++. ++||+++|+.+ .+| +|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ||++|
T Consensus 16 ~p~~~e~~~~~~~W~~~~~l~~-~~~-~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee 93 (337)
T 1ps1_A 16 SPDHARAEAEQLAWPRSLGLIR-SDA-AAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED 93 (337)
T ss_dssp CTTHHHHHHSTTHHHHHTTSCC-SHH-HHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHH-HHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH
Confidence 4456666555 67999999965 589 99999999999999999999999999 9999999999999999998 69999
Q ss_pred HHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhc--------CCchHHHHHHHh-----CCCC-CHHHHH
Q 041926 265 LELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQ--------GKLYHLHYAKEA-----NYIP-SVDEYM 330 (483)
Q Consensus 265 l~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~--------~~~~~~~~l~e~-----g~vP-T~eEYl 330 (483)
++.||+++.+|+.+ .+|+|+++++.++.+++++++...... -..++..+++|+ |++| |++||+
T Consensus 94 ~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl 170 (337)
T 1ps1_A 94 TKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYL 170 (337)
T ss_dssp HHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHH
T ss_pred HHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 99999999999864 479999999999999999996542111 113344556665 9999 999999
Q ss_pred HhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhhhcCCccchhhHHHHhCCCCHH
Q 041926 331 TVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEE 410 (483)
Q Consensus 331 ~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~g~s~e 410 (483)
++|.+|+|++++++++++++|..+|++++++ +.+++|+++++.++||+|||+||++|+++|+++|+|.|||+++|+|+|
T Consensus 171 ~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~e 249 (337)
T 1ps1_A 171 AMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKS 249 (337)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHH
T ss_pred HHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCHH
Confidence 9999999999999999999999999999988 677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 041926 411 EACNEFRKQVSNAWKDVNEECL 432 (483)
Q Consensus 411 eA~~~i~~~i~~~wk~ln~e~l 432 (483)
+|++++.++|+++||++|++.-
T Consensus 250 eA~~~v~~~i~~~~~~~~~~~~ 271 (337)
T 1ps1_A 250 RSVSHMQNEVRARLEQYLLLES 271 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999873
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=2.2e-46 Score=375.23 Aligned_cols=233 Identities=14% Similarity=0.114 Sum_probs=205.5
Q ss_pred hHHHHHHH-HHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhHH-HHHhhhhhhhhccccccccCCHHHHHHH
Q 041926 191 HQKELSDI-SKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRR-LLAKVFPMTSILDDIYDVYGKFEELELF 268 (483)
Q Consensus 191 hq~El~~l-~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri-~~aK~~~li~~iDD~yD~~gt~eEl~~f 268 (483)
|.+|+++. .+||+++|+. +.|| +|+|++++|||.++.++.|+++.+|+ ++||+++|+|++||+||. |+.+|++.|
T Consensus 14 ~~~~~~~~~~~W~~~~~l~-~~~~-~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 14 RVKEVQDEVDGYFLENWKF-PSFK-AVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp THHHHHHHHHHHHHHHSCC-SSHH-HHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCC-CCHH-HHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 56666665 6777999996 5699 99999999999999888899999999 999999999999999999 889999999
Q ss_pred HHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHh-----CCCCCHHHHHHhhhccccch
Q 041926 269 TSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKL---YHLHYAKEA-----NYIPSVDEYMTVASVTSGYP 340 (483)
Q Consensus 269 t~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~~~~---~~~~~l~e~-----g~vPT~eEYl~~~~vSsg~~ 340 (483)
++++.||+.+ +.+|+||+++++++++++++++.......+. .......++ |++||++||+++|.+|+|++
T Consensus 91 ~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~Ps~eeYl~~r~~s~g~~ 168 (300)
T 1di1_A 91 NNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDAELANEVLEPTFVFMRAQTDRARLSIHELGHYLEYREKDVGKA 168 (300)
T ss_dssp HHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCSHHHHHHHHHTCHHHH
T ss_pred HHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhhccHH
Confidence 9999999875 4689999999999999999997655322211 112222233 99999999999999999999
Q ss_pred hHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhhhcCC--------ccchhhHHHHhCCCCHHHH
Q 041926 341 MLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGH--------VASCVECYMKQYGATEEEA 412 (483)
Q Consensus 341 ~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~~~G~--------~~n~V~cyMke~g~s~eeA 412 (483)
++++++++++|..+|+++++ ..++|+++++.++||+|||+||+||+++|+ ++|+|.|||+++|+|+|+|
T Consensus 169 ~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s~eeA 245 (300)
T 1di1_A 169 LLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPAT 245 (300)
T ss_dssp HHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHHHcCCCHHHH
Confidence 99999999999999999998 369999999999999999999999999999 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 041926 413 CNEFRKQVSNAWKDVNEEC 431 (483)
Q Consensus 413 ~~~i~~~i~~~wk~ln~e~ 431 (483)
+++++++|++.||++|+..
T Consensus 246 ~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 246 KRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=1.2e-45 Score=373.63 Aligned_cols=235 Identities=13% Similarity=0.099 Sum_probs=206.8
Q ss_pred HhhHHHHHHH-HHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhHH-HHHhhhhhhhhccccccccCCHHHHH
Q 041926 189 KLHQKELSDI-SKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRR-LLAKVFPMTSILDDIYDVYGKFEELE 266 (483)
Q Consensus 189 ~~hq~El~~l-~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri-~~aK~~~li~~iDD~yD~~gt~eEl~ 266 (483)
..|.+|+++. .+||+++|+..+ || +|+|++++|||.+++++.|+++.+|+ ++||+++|+|++||+||. ||++|++
T Consensus 26 ~p~~~e~~~~~~~W~~~~~l~~~-~~-~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~ 102 (320)
T 3bny_A 26 HPLVEEVSKEVDGYFLQHWNFPN-EK-ARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGS 102 (320)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCSS-HH-HHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCCCC-hH-HHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHH
Confidence 3455666655 677799999765 89 99999999999999888899999999 999999999999999999 8999999
Q ss_pred HHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHh-----CCCCCHHHHHHhhhcccc
Q 041926 267 LFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGK---LYHLHYAKEA-----NYIPSVDEYMTVASVTSG 338 (483)
Q Consensus 267 ~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~~~---~~~~~~l~e~-----g~vPT~eEYl~~~~vSsg 338 (483)
.||+++.+|+.+ +.+|+||++++.++++++++++.......+ .....+++++ |++||++||+++|.+|+|
T Consensus 103 ~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g 180 (320)
T 3bny_A 103 AYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVG 180 (320)
T ss_dssp HHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhhhccc
Confidence 999999999864 468999999999999999999765432111 1233566665 999999999999999999
Q ss_pred chhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhhhcCC--------ccchhhHHHHhCCCCHH
Q 041926 339 YPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGH--------VASCVECYMKQYGATEE 410 (483)
Q Consensus 339 ~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~~~G~--------~~n~V~cyMke~g~s~e 410 (483)
++++++++++++|..+|+++++. +++|+++++.++||+|||+||+||+++|+ ++|+|.|||+++|+|+|
T Consensus 181 ~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s~e 257 (320)
T 3bny_A 181 KELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAE 257 (320)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHHHHHHcCCCHH
Confidence 99999999999999999999984 69999999999999999999999999998 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 041926 411 EACNEFRKQVSNAWKDVNEEC 431 (483)
Q Consensus 411 eA~~~i~~~i~~~wk~ln~e~ 431 (483)
+|++++.++|++.|+++|+..
T Consensus 258 eA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 258 AAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999865
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=4e-41 Score=349.47 Aligned_cols=261 Identities=14% Similarity=0.047 Sum_probs=218.8
Q ss_pred hcCCCccCCchhhHHhhhhhhcCCCCcCcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Q 041926 145 ALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYF 224 (483)
Q Consensus 145 aL~~P~~~~~~r~e~r~yI~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ve~yf 224 (483)
++..|-.-.+|-+..- +. ...||.+-+.. +++.+||+++|+.. -++ +|+|+++++|
T Consensus 35 ~~~~p~~~~lP~~~~p-----fp--~~~nP~~~~v~---------------~~~~~W~~~~gl~~-~~~-~r~r~~~~~~ 90 (382)
T 3kb9_A 35 AIAVPPSLRLPVIEAA-----FP--RQLHPYWPKLQ---------------ETTRTWLLEKRLMP-ADK-VEEYADGLCY 90 (382)
T ss_dssp --CCCTTTCCHHHHHH-----SC--CCCCTTHHHHH---------------HHHHHHHHHTTSSC-HHH-HHHHHHHHCH
T ss_pred eeecCCceeCCCCCCC-----CC--CCCCcCHHHHH---------------HHHHHHHHHcCCCC-CHH-HHHHHHhCCH
Confidence 4456666667766432 22 23566654432 45689999999954 367 9999999999
Q ss_pred HHhhhccCCCcchhHH-HHHhhhhhhhhccccccc--cC-CHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHH
Q 041926 225 WAVAVYFEPQYSLGRR-LLAKVFPMTSILDDIYDV--YG-KFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSE 300 (483)
Q Consensus 225 w~~a~~feP~~s~~Ri-~~aK~~~li~~iDD~yD~--~g-t~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e 300 (483)
|.++.++.|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.++-.. ...+|++++++++++.+++++
T Consensus 91 ~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~l~~-~~~~p~~~~p~~~al~dl~~~ 169 (382)
T 3kb9_A 91 TDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDS-PGDHLHHEDTLVAGFADSVRR 169 (382)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHS-CGGGTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHHhcC-CCCCCCCCChHHHHHHHHHHH
Confidence 9999999999999999 999999999999999996 66 999999999999986211 233688999999999999999
Q ss_pred HHHHHHhc--------CCchHHHHHHHh-----CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchH
Q 041926 301 AEKDLASQ--------GKLYHLHYAKEA-----NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPR 367 (483)
Q Consensus 301 ~~~~~~~~--------~~~~~~~~l~e~-----g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~ 367 (483)
++...... -..++..+++|+ |++||++|||++|.+|+|++++++++++++|..+|++++++ +.+++
T Consensus 170 ~~~~~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~ 248 (382)
T 3kb9_A 170 LYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKH-PAYRR 248 (382)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHH
Confidence 95432111 113445566665 99999999999999999999999999999999999999998 78899
Q ss_pred HHHHHhhhhhhccCccchhhhhhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 041926 368 VIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEEC 431 (483)
Q Consensus 368 i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~ 431 (483)
|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++++||+++||++|+..
T Consensus 249 l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 249 AALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999843
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.95 E-value=5.7e-28 Score=253.66 Aligned_cols=230 Identities=15% Similarity=0.113 Sum_probs=170.3
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHH-HHHHhhhccCCCc-chhHH-HHHhhhhhhhhccccc-cccC-CHHH-HHHHH
Q 041926 196 SDISKWWKELDFAHNLPFTIRDRIAEC-YFWAVAVYFEPQY-SLGRR-LLAKVFPMTSILDDIY-DVYG-KFEE-LELFT 269 (483)
Q Consensus 196 ~~l~rWwk~~~l~~~l~f~aRdr~ve~-yfw~~a~~feP~~-s~~Ri-~~aK~~~li~~iDD~y-D~~g-t~eE-l~~ft 269 (483)
+++..|..++++...-+ .|.++..+ |-..+|.+| |.. +..|+ +.++++.|+|++||.| |..| +.+. -..+.
T Consensus 133 ~~~~~W~~~~~~l~~~~--~~~~~~~~~~~llaa~~y-P~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~ 209 (433)
T 3v1v_A 133 RRIKRWAEDEVQLYPEE--WEGQFDGFSVGRYMVGCH-PDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLL 209 (433)
T ss_dssp HHHHHHHHHTSCCCC------CCSCHHHHHHHHHHHC-TTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHH
T ss_pred HHHHHHHHHcCCCCCHH--HHHHHHhcCHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHH
Confidence 56788999987643222 45566555 667777777 999 79999 9999999999999995 9755 3332 11222
Q ss_pred ---HhcccccccccccCch-----hHHHHHHHHHHHHHHHHHHHH-hcC-------CchHHHHHHHh-----CCCCCHHH
Q 041926 270 ---SAIERWDICAIDELPE-----YMKLCYRALLDVYSEAEKDLA-SQG-------KLYHLHYAKEA-----NYIPSVDE 328 (483)
Q Consensus 270 ---~ai~rWD~~~~~~lpe-----ymk~~~~al~~~~~e~~~~~~-~~~-------~~~~~~~l~e~-----g~vPT~eE 328 (483)
.++..... ..+.-|. .-..+-.+++++++++..... .+. ..++..|++|+ |++||++|
T Consensus 210 ~a~~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleE 288 (433)
T 3v1v_A 210 LAHTAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWE 288 (433)
T ss_dssp HHHTTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 23322211 0010010 012457889999999965422 111 12344566666 99999999
Q ss_pred HHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhhhcC-CccchhhHHHHhCCC
Q 041926 329 YMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRG-HVASCVECYMKQYGA 407 (483)
Q Consensus 329 Yl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~~~G-~~~n~V~cyMke~g~ 407 (483)
||++|.+| |+.++++++.+++|..+|++++++ +.+++|+++++.++||+|||+||+||+++| +++|+|.|||+++|+
T Consensus 289 Yl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~ 366 (433)
T 3v1v_A 289 YLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQL 366 (433)
T ss_dssp HHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTC
T ss_pred HHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCC
Confidence 99999999 677777778888999999999998 778889999999999999999999999995 788999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhh
Q 041926 408 TEEEACNEFRKQVSNAWKDVNEEC 431 (483)
Q Consensus 408 s~eeA~~~i~~~i~~~wk~ln~e~ 431 (483)
|+|+|++++.+|+++.++++.+..
T Consensus 367 S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 367 CERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.56 E-value=1.2e-14 Score=149.59 Aligned_cols=235 Identities=14% Similarity=0.050 Sum_probs=159.5
Q ss_pred HHHHHHHHHhC------------CCCCCCchhHHHHHHHHHHHhhhccCCCcchhHH-HHHhhhhhhhhccccccccCCH
Q 041926 196 SDISKWWKELD------------FAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRR-LLAKVFPMTSILDDIYDVYGKF 262 (483)
Q Consensus 196 ~~l~rWwk~~~------------l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri-~~aK~~~li~~iDD~yD~~gt~ 262 (483)
.+..+|..+.| +. .-+- ..++.+.+=.|.++..| |..+...+ .++++..|+|++||.+|..+
T Consensus 33 ~~~l~w~~~~~~~~~~~~~~~~~l~-~~~~-~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~-- 107 (374)
T 1yyq_A 33 IENLHYAYNKAAHHFAQPRQQQLLK-VDPK-RLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY-- 107 (374)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHSC-CCHH-HHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--
T ss_pred HHHHHHHHHhccchhcccccccccc-cCHH-HHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--
Confidence 44457888877 42 1122 55666666566788888 99999888 99999999999999999654
Q ss_pred HHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHH--------HHhcCCchHHHHHHHh---CCCCCHHHHHH
Q 041926 263 EELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKD--------LASQGKLYHLHYAKEA---NYIPSVDEYMT 331 (483)
Q Consensus 263 eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~--------~~~~~~~~~~~~l~e~---g~vPT~eEYl~ 331 (483)
+++..|.+.+-+ ..+. + .++..++-+.+.++-.. +.+.-..++..+++|+ +..|+.++|..
T Consensus 108 ~~l~~~~~~ll~--G~~~---~---~Pl~~al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n~~~~p~~~~Y~~ 179 (374)
T 1yyq_A 108 PTMVNYFDDLQA--GREQ---A---HPWWALVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQYNFGGFPGSHDYPQ 179 (374)
T ss_dssp HHHTTHHHHHHH--TCCC---S---SHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCTTHHH
T ss_pred HHHHHHHHHHhc--CCCC---C---ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 666666665543 1111 1 14455666666655221 1111123445566665 77899999999
Q ss_pred hhhccccchhHHHHHHHhcCCCCchhhH-hh--ccCchHHHHHHhhhhhhccCccchhhhhhc-CCccchhhHHHHhCCC
Q 041926 332 VASVTSGYPMLSTTSFVGMGDIVTKESF-EW--SLSNPRVIRASSVAARLMNDMVSHKFEQSR-GHVASCVECYMKQYGA 407 (483)
Q Consensus 332 ~~~vSsg~~~~~~~~~~~~g~~l~~e~~-e~--~~~~~~i~~~~~~i~RL~NDi~S~~~E~~~-G~~~n~V~cyMke~g~ 407 (483)
.++.++|+.-.... -.+|...+ +. .+.+..++.....++.|+|||.||.||... |+.+|+|..++.++|+
T Consensus 180 ~rR~~sG~~E~~~~------~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~g~ 253 (374)
T 1yyq_A 180 FLRRMNGLGHCVGA------SLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEI 253 (374)
T ss_dssp HHHHHHHCHHHHHH------TTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHTC
T ss_pred HHHhhccHHHHHHH------hhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcCCC
Confidence 88888887533222 22344333 11 133456677777899999999999999984 9999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhh
Q 041926 408 TEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFL 452 (483)
Q Consensus 408 s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~ 452 (483)
|.++|++++..++.....++-+. +. ...| .+++.+-+..|.-
T Consensus 254 S~~eAl~~v~~~~~~~~~r~~~~-L~-~~~~-~~l~al~~~irG~ 295 (374)
T 1yyq_A 254 SLHEALEKLTQDTLHSSKQMVAV-FS-DKDP-QVMDTIECFMHGY 295 (374)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HS-SSCH-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-hc-cCCH-HHHHHHHHHHhHh
Confidence 99999999999999888888553 32 2233 2445555555443
No 17
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=73.98 E-value=58 Score=31.42 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=83.3
Q ss_pred HHHHHhhhhhhhhccccccccC-C-HHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHH--HHHhcCCchHH
Q 041926 239 RRLLAKVFPMTSILDDIYDVYG-K-FEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEK--DLASQGKLYHL 314 (483)
Q Consensus 239 Ri~~aK~~~li~~iDD~yD~~g-t-~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~--~~~~~~~~~~~ 314 (483)
|-.+.-+-.|.=.+||+=|... . ...|+.+-+.+.+. ...-|. .+++.+|.+++.+..- +... .++
T Consensus 41 R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~----~~g~~~--~pv~~al~~~~~~~~l~~~~~~----~li 110 (294)
T 4hd1_A 41 RPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRA----FAGEAT--TPAFRALQFTIATCNLPMEPFL----RLI 110 (294)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHH----HHTCCC--SHHHHHHHHHHHHHTCCSHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH----hcCCCC--CHHHHHHHHHHHHcCCCHHHHH----HHH
Confidence 3333445556667899998643 2 23333333333321 111122 2567777777665421 1000 011
Q ss_pred HHHH-Hh--CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhhhc
Q 041926 315 HYAK-EA--NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSR 391 (483)
Q Consensus 315 ~~l~-e~--g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~~~ 391 (483)
.-.. .. ...+|++|+......+.|.--.+++..++.. +++.... -...+.-.-|.|=+.......++
T Consensus 111 ~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~---~~~~~~~-------A~~lG~AlQltNilRDv~eD~~~ 180 (294)
T 4hd1_A 111 EANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCL---DDERARL-------SDATCTALQVANHMQDIDRDLAL 180 (294)
T ss_dssp HHHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCC---SHHHHHH-------HHHHHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhCCC---CHHHHHH-------HHHHHHHHHHHHHHHhchhhhcc
Confidence 1111 11 4468988888877766665544444444332 2233322 11222222333322233344556
Q ss_pred CCc--cchhhHHHHhCCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 041926 392 GHV--ASCVECYMKQYGATEEEA---------CNEFRKQVSNAWKDVNEECLRPTVVPMPLL 442 (483)
Q Consensus 392 G~~--~n~V~cyMke~g~s~eeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~ 442 (483)
|-+ +. -.|.++|+|.++- .+-+..+++.+..-+.+..--...+|..+.
T Consensus 181 gR~YlP~---~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r 239 (294)
T 4hd1_A 181 GRIYVPR---ADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLA 239 (294)
T ss_dssp TCBCSCH---HHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHH
T ss_pred CceeCCH---HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 653 33 3578889988752 233444454444444333221245786544
No 18
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=65.63 E-value=97 Score=29.68 Aligned_cols=188 Identities=14% Similarity=0.115 Sum_probs=92.6
Q ss_pred hhHHHHHhhhhhhhhccccccccCCHHHHHHHHHhcccc-ccccc--ccCchhHHHHHHHHHHHHHHHH--HHHHhcCCc
Q 041926 237 LGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERW-DICAI--DELPEYMKLCYRALLDVYSEAE--KDLASQGKL 311 (483)
Q Consensus 237 ~~Ri~~aK~~~li~~iDD~yD~~gt~eEl~~ft~ai~rW-D~~~~--~~lpeymk~~~~al~~~~~e~~--~~~~~~~~~ 311 (483)
..|-.+.-+-.|.-.+||+=|......+|+.+-+.+++- +.... ...|. .++..+|..++.+.. .....
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~~l~~~~~~---- 111 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHKNIAFQSFY---- 111 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHSCCCHHHHH----
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHhCCCHHHHH----
Confidence 456666677777888999999765444455554444331 11110 00022 356677777665532 11000
Q ss_pred hHHHHHH-Hh--CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhh
Q 041926 312 YHLHYAK-EA--NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFE 388 (483)
Q Consensus 312 ~~~~~l~-e~--g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E 388 (483)
.++.-.. .. ...+|++|+......+.|.-..+++-.++..+ ..+..+.. ..+..+..+ ..++-|+. ..
T Consensus 112 ~li~g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~~A---~~lG~AlQl-tNilRDv~---eD 182 (293)
T 3acx_A 112 NLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYDVA---RRLGESLQL-INILRDVG---ED 182 (293)
T ss_dssp HHHHHHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHHHH---HHHHHHHHH-HHHHHCHH---HH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHHHH---HHHHHHHHH-HHHHHHHH---HH
Confidence 0111111 11 34679998888887777766555554554322 12222221 122222221 22334543 33
Q ss_pred hhcCCc--cchhhHHHHhCCCCHHH---------HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 041926 389 QSRGHV--ASCVECYMKQYGATEEE---------ACNEFRKQVSNAWKDVNEECLRPTVVPMPLL 442 (483)
Q Consensus 389 ~~~G~~--~n~V~cyMke~g~s~ee---------A~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~ 442 (483)
..+|-+ +. --|.++|+|.++ ..+-+..++..+..-+.+..--...+|....
T Consensus 183 ~~~gR~YLP~---d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r 244 (293)
T 3acx_A 183 FENERIYFSK---QRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQ 244 (293)
T ss_dssp HHTTCCCSCH---HHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHH
T ss_pred HhCCcEEeCH---HHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH
Confidence 456643 32 246788998776 2344566677666666553321233665433
No 19
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=43.92 E-value=39 Score=32.90 Aligned_cols=117 Identities=13% Similarity=0.155 Sum_probs=63.4
Q ss_pred CCCHHHHHHhhhccccchhHHHHHHHhc--CCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhh-----hcCCcc
Q 041926 323 IPSVDEYMTVASVTSGYPMLSTTSFVGM--GDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQ-----SRGHVA 395 (483)
Q Consensus 323 vPT~eEYl~~~~vSsg~~~~~~~~~~~~--g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~-----~~G~~~ 395 (483)
.||.++|++.-.--+|..+..++ ..|. +. .+++..+. ..++.+..++..-+.||+..+.... ..|. .
T Consensus 153 ~~t~~~y~~~i~~KTg~L~~~a~-~~ga~lag-~~~~~~~~---l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk-~ 226 (295)
T 3ipi_A 153 SFGENDYFKCIYKKTASLFAISA-SIGAYTGG-AEEELAER---FSHFGNALGTAYQIVDDILEFLEVVEGKESKFTS-E 226 (295)
T ss_dssp ---CHHHHHHHHHHTHHHHHHHH-HHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHC--------C
T ss_pred CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCc-c
Confidence 48999999886655555433221 2221 21 34554444 3677788888999999998875432 2333 3
Q ss_pred chhhHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHhhh
Q 041926 396 SCVECYMKQYGA--TEEEACNEFRKQVSNAWKDVNEECLRPTVVPM-PLLMRILNLTRFL 452 (483)
Q Consensus 396 n~V~cyMke~g~--s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~-~~~~~~~n~aR~~ 452 (483)
+...+|..+.+- ..+.|++.+++.++++.+.+. .+|. +-++...++++.+
T Consensus 227 Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~-------~lp~~~~~~~L~~l~~~~ 279 (295)
T 3ipi_A 227 TLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE-------TFRECPARDKLFQITDYI 279 (295)
T ss_dssp CHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT-------TSCCSHHHHHHHHHHHHT
T ss_pred cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH-------hCCCchHHHHHHHHHHHH
Confidence 666677655431 145555555555665555543 2553 4455555555443
No 20
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=38.23 E-value=94 Score=30.59 Aligned_cols=97 Identities=7% Similarity=0.050 Sum_probs=58.9
Q ss_pred CCCCCHHHHHHhhhccccchhHHHHHHHh--cCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhh----------
Q 041926 321 NYIPSVDEYMTVASVTSGYPMLSTTSFVG--MGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFE---------- 388 (483)
Q Consensus 321 g~vPT~eEYl~~~~vSsg~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E---------- 388 (483)
+..||.++|+..-.--+|..+..+ +..| ++...+++..+. ..++.+..++..-+.||+..+..+
T Consensus 172 ~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~ 247 (324)
T 3ts7_A 172 GKKLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDR---LDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGK 247 (324)
T ss_dssp TCCCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccc
Confidence 347899999998554444443322 2222 122145555544 366778888888999998877432
Q ss_pred -hhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 041926 389 -QSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVN 428 (483)
Q Consensus 389 -~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln 428 (483)
...|.. +.+.+| ..|.|.+..++.++++...+.
T Consensus 248 Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 248 DRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp -----CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 122332 555554 468888888888887776554
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=36.68 E-value=2.8e+02 Score=27.28 Aligned_cols=61 Identities=13% Similarity=-0.018 Sum_probs=38.6
Q ss_pred CCCCHHHHHHhhhccccchhHHHHHHHh--cCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhh
Q 041926 322 YIPSVDEYMTVASVTSGYPMLSTTSFVG--MGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKF 387 (483)
Q Consensus 322 ~vPT~eEYl~~~~vSsg~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~ 387 (483)
..||.++|++.-.--+|..+..++ ..| ++ ..+++..+. ..++.+..++..-+.||+..+..
T Consensus 177 ~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~la-g~~~~~~~~---l~~~g~~lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 177 LNLSQAVYLEIIQAKTAELFAAAS-EAGAVSA-GVDVAKSEA---LRDYGLNLGLAFQLADDALDYGG 239 (345)
T ss_dssp SSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHHTTC--
T ss_pred CCCCHHHHHHHHHcchHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
Confidence 358999999987666665543222 222 12 135554444 36777888999999999987754
No 22
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=36.59 E-value=68 Score=31.24 Aligned_cols=98 Identities=14% Similarity=0.105 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHhhhccccchhHHHHHHHh--cCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhh---------
Q 041926 321 NYIPSVDEYMTVASVTSGYPMLSTTSFVG--MGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQ--------- 389 (483)
Q Consensus 321 g~vPT~eEYl~~~~vSsg~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~--------- 389 (483)
+..||.++|++.-.--+|..+..+ +..| ++...+++..+. ..++.+..++..-+.||+..+..+.
T Consensus 172 ~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~ 247 (302)
T 3p8r_A 172 NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDILDIISDTETLGKPQGS 247 (302)
T ss_dssp TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcch
Confidence 457899999998654444433222 2222 121123333333 3667788888899999998775431
Q ss_pred --hcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041926 390 --SRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNE 429 (483)
Q Consensus 390 --~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~ 429 (483)
..|.. +...+| ..+.|.+.+++.++++.+.++.
T Consensus 248 Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 248 DQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp -----CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 22332 555554 3678888888888888877753
No 23
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=36.41 E-value=79 Score=30.78 Aligned_cols=97 Identities=10% Similarity=0.056 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHhhhccccchhHHHH--HHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhh----------
Q 041926 321 NYIPSVDEYMTVASVTSGYPMLSTT--SFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFE---------- 388 (483)
Q Consensus 321 g~vPT~eEYl~~~~vSsg~~~~~~~--~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E---------- 388 (483)
+..||.++|...-.--+|..+.... .-...| .+++..+. ..++.+..++..-+.||+..+..+
T Consensus 170 ~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~ 244 (302)
T 3p8l_A 170 KVSLTLEELAAVHEKKTGALIEFALIAGGVLAN--QTEEVIGL---LTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGR 244 (302)
T ss_dssp TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred CCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhh
Confidence 4468999999975444443332221 111122 34554444 367778888888999998877432
Q ss_pred -hhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041926 389 -QSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNE 429 (483)
Q Consensus 389 -~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~ 429 (483)
...|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 245 Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 245 DEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp ------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 222332 444443 4788999999999998888764
No 24
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=35.83 E-value=90 Score=30.65 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHhhhccccchhHHHHHHHh--cCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhh---------
Q 041926 321 NYIPSVDEYMTVASVTSGYPMLSTTSFVG--MGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQ--------- 389 (483)
Q Consensus 321 g~vPT~eEYl~~~~vSsg~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~--------- 389 (483)
+..||.++|+..-.--+|..+..+ +..| ++...+++..+. ..++.+..++..-+.||+..+..+.
T Consensus 165 ~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~ 240 (317)
T 4f62_A 165 NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAK---LDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFS 240 (317)
T ss_dssp SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhccCChHhhCCCcch
Confidence 456899999998654444433222 1222 122235555443 3667788888899999998774321
Q ss_pred --hcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041926 390 --SRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNE 429 (483)
Q Consensus 390 --~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~ 429 (483)
..|. .+...+| ..|.|.+.+++.++++.+.+..
T Consensus 241 Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 241 DAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp ----CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 2233 2555554 3688888899999988887764
No 25
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=30.01 E-value=91 Score=30.24 Aligned_cols=97 Identities=7% Similarity=0.020 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHhhhccccchhHHHHH--HHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhh---------
Q 041926 321 NYIPSVDEYMTVASVTSGYPMLSTTS--FVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQ--------- 389 (483)
Q Consensus 321 g~vPT~eEYl~~~~vSsg~~~~~~~~--~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~--------- 389 (483)
+..||.++|++.-.--+|..+..+.. -...| .+++..+. ..++....++..-+.||+..+....
T Consensus 162 ~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~ 236 (301)
T 1rtr_A 162 GQPIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEH---LESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGS 236 (301)
T ss_dssp TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcch
Confidence 33689999999876665554332221 11123 45555544 3677888899999999998875432
Q ss_pred --hcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041926 390 --SRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNE 429 (483)
Q Consensus 390 --~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~ 429 (483)
..|.. +...+|. .+.|.+.+++.++++.+.+..
T Consensus 237 Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 237 DLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp ------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 22232 5554443 577888888888888877754
No 26
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=28.31 E-value=94 Score=30.26 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHhhhccccchhHHHHHHHh--cCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhh-hcCC----
Q 041926 321 NYIPSVDEYMTVASVTSGYPMLSTTSFVG--MGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQ-SRGH---- 393 (483)
Q Consensus 321 g~vPT~eEYl~~~~vSsg~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~-~~G~---- 393 (483)
+..||.++|...-.--+|..+..+ +..| ++...+++..+. ..++.+..++..-+.||+..+..+. .-|+
T Consensus 166 ~~~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~ 241 (304)
T 3lsn_A 166 GLKLDQQALEYMHRHKTGALIEAS-VILGALASGRAEKGELKA---LQTYAQAIGLAFQVQDDILDVESDTATLGKRQGA 241 (304)
T ss_dssp TCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCCCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhccCChHHhCCCccc
Confidence 345899999988544444433222 1222 122114544444 3677788889999999998875432 2222
Q ss_pred -c----cchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 041926 394 -V----ASCVECYMKQYGATEEEACNEFRKQVSNAWKDVN 428 (483)
Q Consensus 394 -~----~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln 428 (483)
. .+.+.+| ..+.|.+.+++.++++.+.+.
T Consensus 242 Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 242 DIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp ------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 1 2555554 468888888888888877664
No 27
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=27.85 E-value=1.2e+02 Score=29.81 Aligned_cols=95 Identities=9% Similarity=0.045 Sum_probs=57.6
Q ss_pred CCCHHHHHHhhhccccchhHHHHHHHh--cCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhh-----------h
Q 041926 323 IPSVDEYMTVASVTSGYPMLSTTSFVG--MGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFE-----------Q 389 (483)
Q Consensus 323 vPT~eEYl~~~~vSsg~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E-----------~ 389 (483)
.||.++|...-.--+|..+..+ +..| ++ ..+++..+. ..++-+..++..-+.||+..+..+ .
T Consensus 197 ~~t~~~y~~i~~~KTa~L~~~a-~~~Ga~la-ga~~~~~~~---l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl 271 (324)
T 3uca_A 197 EISLKELDYMHLKKTGELIKAS-IMSGAVLA-EASEGDIKK---LEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQ 271 (324)
T ss_dssp SCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCC------------
T ss_pred CCCHHHHHHHHhcchHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHh
Confidence 6899999998544344333222 1221 12 134554443 367778888889999998877432 1
Q ss_pred hcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041926 390 SRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNE 429 (483)
Q Consensus 390 ~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~ 429 (483)
..|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 272 ~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 272 ESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp ------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 22322 444443 3688999999999999888764
No 28
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=26.84 E-value=1.6e+02 Score=29.30 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=46.3
Q ss_pred CCHHHHHHhhhccccchhHHHHH--HHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhh-----------hh
Q 041926 324 PSVDEYMTVASVTSGYPMLSTTS--FVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFE-----------QS 390 (483)
Q Consensus 324 PT~eEYl~~~~vSsg~~~~~~~~--~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E-----------~~ 390 (483)
||.++|++.-.--+|..+..++. -+..| .+++..+. ..++.+..++..-+.||+..+... ..
T Consensus 187 ~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~---l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~ 261 (360)
T 3lmd_A 187 DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDA---LKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLR 261 (360)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHC--------CCHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHh
Confidence 99999999866655555433221 11223 34554444 367778888899999999877532 22
Q ss_pred cCCccchhhHHHHhC
Q 041926 391 RGHVASCVECYMKQY 405 (483)
Q Consensus 391 ~G~~~n~V~cyMke~ 405 (483)
.|.. +...+|.-+.
T Consensus 262 egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 262 EGVF-TLPVLYALRE 275 (360)
T ss_dssp HTCC-CHHHHHHHHC
T ss_pred cCCc-hHHHHHHHHc
Confidence 3443 6666666544
No 29
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=26.65 E-value=4.6e+02 Score=25.64 Aligned_cols=79 Identities=11% Similarity=0.030 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHhhhccccchhHHHH--HHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhh----------
Q 041926 321 NYIPSVDEYMTVASVTSGYPMLSTT--SFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFE---------- 388 (483)
Q Consensus 321 g~vPT~eEYl~~~~vSsg~~~~~~~--~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E---------- 388 (483)
+..||.++|++.-..-+|..+..++ .-...| .+++..+. ..++.+..++..-+.||+..+..+
T Consensus 164 ~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~ 238 (341)
T 3mzv_A 164 NLATTEDIYLRVIRGKTAALFSAATEVGGIIGG--APEDQVQA---LFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGD 238 (341)
T ss_dssp CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHHHHC----------CCH
T ss_pred CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCc
Confidence 3458999999886665555433222 111122 34444443 366778888888999998876432
Q ss_pred -hhcCCccchhhHHHHhC
Q 041926 389 -QSRGHVASCVECYMKQY 405 (483)
Q Consensus 389 -~~~G~~~n~V~cyMke~ 405 (483)
...|.. +...+|.-+.
T Consensus 239 Dl~egK~-Tlp~i~al~~ 255 (341)
T 3mzv_A 239 DFRERKL-TMPVIKAVAL 255 (341)
T ss_dssp HHHTTCC-CHHHHHHHHT
T ss_pred ccccCch-hHHHHHHHHh
Confidence 233443 6666665443
No 30
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=26.03 E-value=97 Score=30.31 Aligned_cols=96 Identities=7% Similarity=0.055 Sum_probs=59.0
Q ss_pred CCCHHHHHHhhhccccchhHHHHHHHhcCCC-CchhhHhhccCchHHHHHHhhhhhhccCccchhhhh-----------h
Q 041926 323 IPSVDEYMTVASVTSGYPMLSTTSFVGMGDI-VTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQ-----------S 390 (483)
Q Consensus 323 vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~-----------~ 390 (483)
.||.++|...-.--+|..+..+.....++.. .+++..+. ..++.+..++..-+.||+..+..+. .
T Consensus 175 ~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~---l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~ 251 (313)
T 3lom_A 175 SVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSA---LRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQA 251 (313)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhh
Confidence 7899999988654444433222222223332 45655544 3677788888999999998775421 2
Q ss_pred cCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 041926 391 RGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVN 428 (483)
Q Consensus 391 ~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln 428 (483)
.|.. +.+.+| ..+.|.+.+++.++++.+.+.
T Consensus 252 ~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 252 NQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp --CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 2222 444443 468888888888888876654
No 31
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=24.98 E-value=3.2e+02 Score=26.65 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=38.7
Q ss_pred CCCHHHHHHhhhccccchhHHHHHH--HhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhh
Q 041926 323 IPSVDEYMTVASVTSGYPMLSTTSF--VGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKF 387 (483)
Q Consensus 323 vPT~eEYl~~~~vSsg~~~~~~~~~--~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~ 387 (483)
.||.++|++.-..-+|..+..++.. +..| .+++..+. ..++....++..-+.||+..+..
T Consensus 160 ~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 160 SFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAF---ARLLGEYIGICFQIKDDIFDYFD 221 (334)
T ss_dssp -CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHhccCCC
Confidence 5899999998776666554333211 1122 34544443 36777888899999999988753
No 32
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=24.72 E-value=2e+02 Score=28.07 Aligned_cols=96 Identities=5% Similarity=-0.002 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHhhhccccchhHHHH--HHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhh----------
Q 041926 321 NYIPSVDEYMTVASVTSGYPMLSTT--SFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFE---------- 388 (483)
Q Consensus 321 g~vPT~eEYl~~~~vSsg~~~~~~~--~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E---------- 388 (483)
+..||.++|...-.--+|..+..+. .-...| .+++..+. ..++....++..-+.||+..+...
T Consensus 169 ~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~ 243 (309)
T 3pde_A 169 HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ--APEAQWPA---YLQFADAFGLAFQIYDDILDVVSSPAEMGKATQK 243 (309)
T ss_dssp TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCGGGHHH---HHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccc
Confidence 4468999999985444444332221 111123 34444433 366778888888999999877432
Q ss_pred -hhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 041926 389 -QSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVN 428 (483)
Q Consensus 389 -~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln 428 (483)
...|.. +.+.+| ..+.|.+..+++++++.+.+.
T Consensus 244 Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 244 DADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp -CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 222332 444443 357788888888888887776
No 33
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=22.94 E-value=66 Score=24.63 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 041926 405 YGATEEEACNEFRKQVSNAWKDV 427 (483)
Q Consensus 405 ~g~s~eeA~~~i~~~i~~~wk~l 427 (483)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888644
No 34
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=22.49 E-value=2.9e+02 Score=27.12 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=37.5
Q ss_pred CCCHHHHHHhhhccccchhHHHH--HHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhh
Q 041926 323 IPSVDEYMTVASVTSGYPMLSTT--SFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKF 387 (483)
Q Consensus 323 vPT~eEYl~~~~vSsg~~~~~~~--~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~ 387 (483)
.||.++|++.-..-+|..+..++ .-...| .+++..+. ..++....++..-+.||+..+..
T Consensus 180 ~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQi~DD~lD~~g 241 (348)
T 3apz_A 180 RYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVAVL---AFEYGRNLGLAFQLIDDILDFTG 241 (348)
T ss_dssp HTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHHHH---HHHHHHHHHHHHHHHHHHhhccC
Confidence 47999999985555554433222 112223 34444443 35677888889999999988754
No 35
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=22.27 E-value=2.7e+02 Score=27.28 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=45.4
Q ss_pred CCCCHHHHHHhhhccccchhHHHHHHHhc--CCCCchhhHhhccCchHHHHHHhhhhhhccCccchhh-----------h
Q 041926 322 YIPSVDEYMTVASVTSGYPMLSTTSFVGM--GDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKF-----------E 388 (483)
Q Consensus 322 ~vPT~eEYl~~~~vSsg~~~~~~~~~~~~--g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~-----------E 388 (483)
..||.++|++.-.--+|..+..+ +..|+ +. .+++..+. ..++.+..++..-+.||+..+.. .
T Consensus 169 ~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~---l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~D 243 (334)
T 3pko_A 169 EDITLDAYLNEIAGKTAELFALS-CYQGAQLAG-APQSVIDR---TRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLED 243 (334)
T ss_dssp TTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCc
Confidence 46899999987655555543222 22221 21 35554444 35667778888888888876642 2
Q ss_pred hhcCCccchhhHHHHh
Q 041926 389 QSRGHVASCVECYMKQ 404 (483)
Q Consensus 389 ~~~G~~~n~V~cyMke 404 (483)
...|.. +...+|.-+
T Consensus 244 l~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 244 LRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHTTCC-CHHHHHHGG
T ss_pred cccCch-hHHHHHHHH
Confidence 344554 666666554
No 36
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=20.04 E-value=1.1e+02 Score=29.61 Aligned_cols=92 Identities=9% Similarity=0.007 Sum_probs=56.2
Q ss_pred CCCHHHHHHhhhccccchhHHH--HHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhhhcCCccchhhH
Q 041926 323 IPSVDEYMTVASVTSGYPMLST--TSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVEC 400 (483)
Q Consensus 323 vPT~eEYl~~~~vSsg~~~~~~--~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~c 400 (483)
.+|.++|+..-.--+|..+..+ ..-...| .+++..+. ..++....++..-+.||+..+..+. -.+...+
T Consensus 179 ~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDiLD~~~~~----K~T~p~l 249 (293)
T 2j1p_A 179 NVGLEHLKFIHLHKTAALLEASAVLGGIIGG--GSDEEIER---LRKFARCIGLLFQVVDDILDVTKSS----KLTYPKL 249 (293)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHC------CCCHHHH
T ss_pred CCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHHHccCCc----cccHHHH
Confidence 3688999988543333332221 1112223 35555544 3677788899999999998876543 2355544
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041926 401 YMKQYGATEEEACNEFRKQVSNAWKDVNE 429 (483)
Q Consensus 401 yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 429 (483)
| ..|.|.+.+.+.++++.+.+..
T Consensus 250 ~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 250 M------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp H------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHh
Confidence 4 4577888888888888766643
Done!