BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041927
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
PE=2 SV=2
Length = 184
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 98 GTGLAGTTSANGQNPQ----TQLGPDGLGLGFGTITVIDDILTSNPELGSQAIGRAQGVY 153
G A TSA P+ T+L P FG I V DD +T + L S+ +GRAQG Y
Sbjct: 45 GKNAANATSAIVAAPEGVSLTKLAPQS---HFGNIIVFDDPITLSHSLSSKQVGRAQGFY 101
Query: 154 IASSVDGTSQMMTFTAMIEGGEYGDSLNFYGLYKIGSTMSRLSVTGGTGKFKNARGFAEV 213
I + + + ++FT ++ + ++ F G I + +SVTGGTG F RG A +
Sbjct: 102 IYDTKNTYTSWLSFTFVLNSTHHQGTITFAGADPIVAKTRDISVTGGTGDFFMHRGIATI 161
>sp|P47180|PGLR_YEAST Polygalacturonase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PGU1 PE=1 SV=1
Length = 361
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 24 TATGEVPVLELYMHDILGGSSPTARPVTGLLGNIYNGQ 61
TATG VP+ L M DI G + TA+ V L+ N N Q
Sbjct: 298 TATGGVPISNLVMKDITGSVNSTAKRVKILVKNATNWQ 335
>sp|Q1D7U2|RPOC_MYXXD DNA-directed RNA polymerase subunit beta' OS=Myxococcus xanthus
(strain DK 1622) GN=rpoC PE=3 SV=1
Length = 1403
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 12 GTMIALIQAVIITATGEV--PVLELYMHDILGGSSPTARPVTGLLGNIYNGQVPFARPVG 69
G +++ +AV + A + P +L M G + T R L N Y G V FA V
Sbjct: 897 GRKVSVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATRRAEQSSLENRYAGSVKFAGLVT 956
Query: 70 LRPPEGGVVIPNANGAIPTVN 90
++ +G +V N NG I V+
Sbjct: 957 VQKTDGTLVAMNRNGEIVVVD 977
>sp|Q8I8U2|AP1G_DICDI AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1
PE=1 SV=1
Length = 895
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 134 ILTSNPELGSQAIGRAQGVYIASSVDGTSQMMTFTAMIEGGEYGDSL 180
+++S PEL S A+ Q +Y+A D T Q +T + GEYGD L
Sbjct: 442 LISSTPELSSYAV---QKLYLALKQDITQQPLTQVGLWCIGEYGDLL 485
>sp|O30633|RECA_XANOR Protein RecA OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=recA PE=3 SV=2
Length = 344
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 131 IDDILTSNPELGSQAIGRAQGVYIASSVD----GTSQMMTFTAMIEGGEYGDSL 180
+DD+L S P+ G QA+ A + +SSVD + +T A IE GE GD L
Sbjct: 110 VDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIE-GEMGDQL 162
>sp|B2SUC8|RECA_XANOP Protein RecA OS=Xanthomonas oryzae pv. oryzae (strain PXO99A)
GN=recA PE=3 SV=1
Length = 344
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 131 IDDILTSNPELGSQAIGRAQGVYIASSVD----GTSQMMTFTAMIEGGEYGDSL 180
+DD+L S P+ G QA+ A + +SSVD + +T A IE GE GD L
Sbjct: 110 VDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIE-GEMGDQL 162
>sp|Q2P1M9|RECA_XANOM Protein RecA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
GN=recA PE=3 SV=1
Length = 344
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 131 IDDILTSNPELGSQAIGRAQGVYIASSVD----GTSQMMTFTAMIEGGEYGDSL 180
+DD+L S P+ G QA+ A + +SSVD + +T A IE GE GD L
Sbjct: 110 VDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIE-GEMGDQL 162
>sp|Q60101|RECA_XANCP Protein RecA OS=Xanthomonas campestris pv. campestris (strain ATCC
33913 / NCPPB 528 / LMG 568) GN=recA PE=3 SV=1
Length = 343
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 131 IDDILTSNPELGSQAIGRAQGVYIASSVD----GTSQMMTFTAMIEGGEYGDSL 180
+DD+L S P+ G QA+ A + +SSVD + +T A IE GE GD L
Sbjct: 110 VDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIE-GEMGDQL 162
>sp|B0RTY3|RECA_XANCB Protein RecA OS=Xanthomonas campestris pv. campestris (strain B100)
GN=recA PE=3 SV=1
Length = 343
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 131 IDDILTSNPELGSQAIGRAQGVYIASSVD----GTSQMMTFTAMIEGGEYGDSL 180
+DD+L S P+ G QA+ A + +SSVD + +T A IE GE GD L
Sbjct: 110 VDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIE-GEMGDQL 162
>sp|Q4UTR4|RECA_XANC8 Protein RecA OS=Xanthomonas campestris pv. campestris (strain 8004)
GN=recA PE=3 SV=1
Length = 343
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 131 IDDILTSNPELGSQAIGRAQGVYIASSVD----GTSQMMTFTAMIEGGEYGDSL 180
+DD+L S P+ G QA+ A + +SSVD + +T A IE GE GD L
Sbjct: 110 VDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIE-GEMGDQL 162
>sp|Q9VS24|MELT_DROME Protein melted OS=Drosophila melanogaster GN=melt PE=1 SV=2
Length = 994
Score = 31.6 bits (70), Expect = 5.3, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 57 IYNGQVPFARPVGLRPPEGGVVIPNANGAIPTVNGNNGIPLGT-GLAGTTSANGQNPQTQ 115
+ +G P P GL P V P +N + T + +GIP+ + G+ TTS + P +Q
Sbjct: 502 VQSGATP-KTPTGLSNPPVTPVPPLSNNVVITGHNRHGIPVTSGGVTVTTSPSKVRPHSQ 560
Query: 116 LGPDGLGLGFGTITVIDDILTSNPELGSQAIGRAQGV 152
GP L L T+ + N +GS +I ++ V
Sbjct: 561 -GPSTL-LNSSTVLMKYSTDALNQSVGSISIPQSAAV 595
>sp|Q9QYC1|PCX1_MOUSE Pecanex-like protein 1 OS=Mus musculus GN=Pcnx PE=2 SV=3
Length = 2344
Score = 30.8 bits (68), Expect = 7.9, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 75 GGVVIPNANGAIPTVNGNNGIPLG-TGLAGTTSANGQNPQTQLGPDGLGLGFGTITVIDD 133
GG P N A+ + +N + G TG G + +G +P T P LG +V
Sbjct: 2057 GGTSCP-GNSAVTASDPHNNVSQGSTGHPGQGAGSGLHPPTTSYPPTLGTSHSAHSVQSS 2115
Query: 134 ILTSNPELGSQAIGRAQGVYIASSVDGTSQMMT 166
++ +P S A +Q Y SS + +M T
Sbjct: 2116 LVRQSPARASMA---SQSSYCYSSRHSSLRMST 2145
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.139 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,760,843
Number of Sequences: 539616
Number of extensions: 4653512
Number of successful extensions: 11899
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 11778
Number of HSP's gapped (non-prelim): 192
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)