Query 041927
Match_columns 239
No_of_seqs 169 out of 494
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 12:11:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 2.4E-46 5.2E-51 310.7 18.0 143 28-239 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.3 0.0046 9.9E-08 53.4 11.4 101 123-238 34-138 (176)
3 PLN02343 allene oxide cyclase 96.0 0.057 1.2E-06 48.4 9.5 89 123-217 85-177 (229)
4 PF11528 DUF3224: Protein of u 84.5 14 0.0003 30.9 9.9 75 142-216 39-119 (134)
5 PF07172 GRP: Glycine rich pro 38.6 26 0.00057 27.6 2.3 19 8-26 10-28 (95)
6 PF10969 DUF2771: Protein of u 21.7 1.1E+02 0.0023 26.3 3.3 17 25-41 30-46 (161)
7 COG5510 Predicted small secret 20.5 1.2E+02 0.0025 21.3 2.7 20 1-20 1-22 (44)
8 PF06344 Parecho_VpG: Parechov 19.7 65 0.0014 18.9 1.1 16 58-73 3-18 (20)
9 COG0806 RimM RimM protein, req 16.6 69 0.0015 27.9 1.1 9 33-41 100-108 (174)
10 PF09405 Btz: CASC3/Barentsz e 16.5 33 0.00071 28.2 -0.9 10 33-42 48-57 (129)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=2.4e-46 Score=310.69 Aligned_cols=143 Identities=41% Similarity=0.690 Sum_probs=130.6
Q ss_pred CcceEEEEEeeccCCCCCcceeeeccccccccCCccccCCCCCCCCCCceeccCCCCCcccccCCCCCCccccccccccc
Q 041927 28 EVPVLELYMHDILGGSSPTARPVTGLLGNIYNGQVPFARPVGLRPPEGGVVIPNANGAIPTVNGNNGIPLGTGLAGTTSA 107 (239)
Q Consensus 28 ~~~~l~fymHDil~Gs~pta~~vtg~~~~~~~~~~pf~~p~~~~~~~~g~pl~~~~~~~~~~~~~~~~p~~tgl~g~~~~ 107 (239)
|+++|+|||||+++|+|||+.+|+...
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~----------------------------------------------------- 27 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPP----------------------------------------------------- 27 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCC-----------------------------------------------------
Confidence 568999999999999999999996531
Q ss_pred CCCCCCcccCCCCCCCCCeeEEEEccccccCCCCCCcceeeeEEEEEEecCCCceeeEEEEEEEccCCcCC-eEEEeecc
Q 041927 108 NGQNPQTQLGPDGLGLGFGTITVIDDILTSNPELGSQAIGRAQGVYIASSVDGTSQMMTFTAMIEGGEYGD-SLNFYGLY 186 (239)
Q Consensus 108 ~~~~~~~~~gp~~s~~~FGtv~ViDd~LTeGp~~~Sk~VGRAQG~yv~ss~dg~s~~~~~t~vF~~g~y~G-SL~~~G~~ 186 (239)
.....+||+++|+||+|||||+++||+||||||+|+.+++++.+|+++++++|++++|+| ||+++|++
T Consensus 28 -----------~~~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~vF~~g~~~GStl~v~G~~ 96 (144)
T PF03018_consen 28 -----------GPSSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTLVFEDGEYNGSTLSVMGRD 96 (144)
T ss_pred -----------CCCCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEEEEEecccCCCeEEEeCCC
Confidence 011237999999999999999999999999999999999999999999999999999998 69999999
Q ss_pred CCCCcceeeeEeeccCcccCceeEEEEEEecCCCccccCCCceEEEEEEEEeC
Q 041927 187 KIGSTMSRLSVTGGTGKFKNARGFAEVRALIPPGQHVTDGAETLLRITVHLNY 239 (239)
Q Consensus 187 ~~~~~~rElaVVGGTG~Fr~ArGya~~~t~~~~~q~~tdg~~~ile~~Vyl~~ 239 (239)
+..+++||||||||||+|||||||++++++. +.++.+.++||+|||+|
T Consensus 97 ~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~~-----~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 97 PFFEPVRELAVVGGTGEFRMARGYAKLRTVF-----DSSGGNAVLELNVHLFH 144 (144)
T ss_pred cccCcccEEeEecCCCeEcceEEEEEEEEEe-----ecCCCCEEEEEEEEEEC
Confidence 9999999999999999999999999999982 35678999999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.28 E-value=0.0046 Score=53.43 Aligned_cols=101 Identities=20% Similarity=0.288 Sum_probs=71.9
Q ss_pred CCCeeEEEEccccccCCCCCCcceeeeEEEEEEecC----CCceeeEEEEEEEccCCcCCeEEEeeccCCCCcceeeeEe
Q 041927 123 LGFGTITVIDDILTSNPELGSQAIGRAQGVYIASSV----DGTSQMMTFTAMIEGGEYGDSLNFYGLYKIGSTMSRLSVT 198 (239)
Q Consensus 123 ~~FGtv~ViDd~LTeGp~~~Sk~VGRAQG~yv~ss~----dg~s~~~~~t~vF~~g~y~GSL~~~G~~~~~~~~rElaVV 198 (239)
...|..+-+.|+|..|.- .+.+|--+|+.+.-.. .|-.+--.+++.|-+ -|.|+++|..-.- ...-++|.
T Consensus 34 nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~GdryEaiySfyfGd---yGhISvqGpy~t~-eDtyLAVT 107 (176)
T PF06351_consen 34 NSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRYEAIYSFYFGD---YGHISVQGPYLTY-EDTYLAVT 107 (176)
T ss_dssp S-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEEEEEEEEE-GG---GEEEEEEEEEETT-S-EEEEEE
T ss_pred hhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceEEEEEEEEecc---cceEEEecccccc-cceeEEEe
Confidence 458999999999999864 5889999999887653 233334445666644 3789999998765 55679999
Q ss_pred eccCcccCceeEEEEEEecCCCccccCCCceEEEEEEEEe
Q 041927 199 GGTGKFKNARGFAEVRALIPPGQHVTDGAETLLRITVHLN 238 (239)
Q Consensus 199 GGTG~Fr~ArGya~~~t~~~~~q~~tdg~~~ile~~Vyl~ 238 (239)
||||-|+.|+|-++++.+.+. .-+-|+.||+
T Consensus 108 GGtGiF~g~~GqVkL~qivfP---------fKlfYTFylk 138 (176)
T PF06351_consen 108 GGTGIFEGVYGQVKLHQIVFP---------FKLFYTFYLK 138 (176)
T ss_dssp EEEETTTT-EEEEEEEEEETT---------TEEEEEEEEE
T ss_pred ccCceeecceEEEEEEEeecc---------eEEEEEEEec
Confidence 999999999999999987431 2455666664
No 3
>PLN02343 allene oxide cyclase
Probab=96.03 E-value=0.057 Score=48.44 Aligned_cols=89 Identities=18% Similarity=0.347 Sum_probs=70.1
Q ss_pred CCCeeEEEEccccccCCCCCCcceeeeEEEEEEecC----CCceeeEEEEEEEccCCcCCeEEEeeccCCCCcceeeeEe
Q 041927 123 LGFGTITVIDDILTSNPELGSQAIGRAQGVYIASSV----DGTSQMMTFTAMIEGGEYGDSLNFYGLYKIGSTMSRLSVT 198 (239)
Q Consensus 123 ~~FGtv~ViDd~LTeGp~~~Sk~VGRAQG~yv~ss~----dg~s~~~~~t~vF~~g~y~GSL~~~G~~~~~~~~rElaVV 198 (239)
...|+++-+.+.|..|. --+.+|--.|+.+.-.. .|-.+=-.+++.|-+ | |-|+++|..-.- +..-++|.
T Consensus 85 ~sLGDlVPFsNKlY~g~--L~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGD--y-GHisvqGpylty-eDt~LaiT 158 (229)
T PLN02343 85 NALGDLVPFTNKLYTGD--LKKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGD--Y-GHISVQGPYLTY-EDTYLAIT 158 (229)
T ss_pred ccccceeccccccccch--hhhhhcccceeEEEEEeccccCCceeEEEEEEEecC--c-ceeEEecccccc-ccceEEee
Confidence 56899999999999885 35789999999887665 233445556677744 3 679999998764 34679999
Q ss_pred eccCcccCceeEEEEEEec
Q 041927 199 GGTGKFKNARGFAEVRALI 217 (239)
Q Consensus 199 GGTG~Fr~ArGya~~~t~~ 217 (239)
||+|-|+.|+|-+++..+.
T Consensus 159 GGsGiFega~GqvkL~qiv 177 (229)
T PLN02343 159 GGSGIFEGAYGQVKLHQIV 177 (229)
T ss_pred cCcceeecceeEEEEeeee
Confidence 9999999999999988875
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=84.54 E-value=14 Score=30.86 Aligned_cols=75 Identities=21% Similarity=0.368 Sum_probs=49.1
Q ss_pred CCcceeeeEEEEEEecC-CCceeeEEEEEEEc-cCCcCCe--EEEeeccCCCCcceeeeEe--eccCcccCceeEEEEEE
Q 041927 142 GSQAIGRAQGVYIASSV-DGTSQMMTFTAMIE-GGEYGDS--LNFYGLYKIGSTMSRLSVT--GGTGKFKNARGFAEVRA 215 (239)
Q Consensus 142 ~Sk~VGRAQG~yv~ss~-dg~s~~~~~t~vF~-~g~y~GS--L~~~G~~~~~~~~rElaVV--GGTG~Fr~ArGya~~~t 215 (239)
.-.+.|++++-|+.+-. ++...++++.-+=- -+..+|| |+-.|.........+|-|| -|||++...+|-..++.
T Consensus 39 ~G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~GsFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~ 118 (134)
T PF11528_consen 39 SGDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSGSFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITI 118 (134)
T ss_dssp -TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEE
T ss_pred EeEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEE
Confidence 34577888888887754 46666665543211 1223577 5666776655566789999 99999999999999887
Q ss_pred e
Q 041927 216 L 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 119 ~ 119 (134)
T PF11528_consen 119 D 119 (134)
T ss_dssp E
T ss_pred C
Confidence 5
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=38.61 E-value=26 Score=27.64 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhhhcc
Q 041927 8 FVFLGTMIALIQAVIITAT 26 (239)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~ 26 (239)
.+||++.+|++++|.++..
T Consensus 10 ~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 10 GLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHhhhhhHHh
Confidence 3667776777777777533
No 6
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=21.72 E-value=1.1e+02 Score=26.29 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=12.7
Q ss_pred ccCCcceEEEEEeeccC
Q 041927 25 ATGEVPVLELYMHDILG 41 (239)
Q Consensus 25 ~~~~~~~l~fymHDil~ 41 (239)
..+..+.++||-|+-+.
T Consensus 30 ~~p~~p~It~~s~g~~~ 46 (161)
T PF10969_consen 30 SDPQDPEITAYSDGELV 46 (161)
T ss_pred CCCCCcEEEEEECCcEE
Confidence 34456799999988765
No 7
>COG5510 Predicted small secreted protein [Function unknown]
Probab=20.51 E-value=1.2e+02 Score=21.26 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=10.2
Q ss_pred Ccch--hhHHHHHHHHHHHHHh
Q 041927 1 MFKR--LSAFVFLGTMIALIQA 20 (239)
Q Consensus 1 ~~~~--~~~~~~l~~~~~~~~~ 20 (239)
|+|| |..+++|.+..+|..-
T Consensus 1 mmk~t~l~i~~vll~s~llaaC 22 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAAC 22 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHh
Confidence 6788 4444444444444443
No 8
>PF06344 Parecho_VpG: Parechovirus Genome-linked protein; InterPro: IPR009407 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C)) []. This entry consists of the genome-linked protein Vpg type P3B.; GO: 0019015 viral genome
Probab=19.70 E-value=65 Score=18.87 Aligned_cols=16 Identities=44% Similarity=0.800 Sum_probs=13.0
Q ss_pred ccCCccccCCCCCCCC
Q 041927 58 YNGQVPFARPVGLRPP 73 (239)
Q Consensus 58 ~~~~~pf~~p~~~~~~ 73 (239)
|+--+|-+||-|.||.
T Consensus 3 ynptlp~~kpkgtfpv 18 (20)
T PF06344_consen 3 YNPTLPVAKPKGTFPV 18 (20)
T ss_pred cCccccccccCCcccc
Confidence 5556899999998886
No 9
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=16.55 E-value=69 Score=27.89 Aligned_cols=9 Identities=56% Similarity=1.335 Sum_probs=8.4
Q ss_pred EEEEeeccC
Q 041927 33 ELYMHDILG 41 (239)
Q Consensus 33 ~fymHDil~ 41 (239)
+||+||++|
T Consensus 100 EfY~~DLiG 108 (174)
T COG0806 100 EFYYHDLIG 108 (174)
T ss_pred cEEeEeecC
Confidence 799999998
No 10
>PF09405 Btz: CASC3/Barentsz eIF4AIII binding; InterPro: IPR018545 This domain is found on CASC3 (cancer susceptibility candidate gene 3 protein) which is also known as Barentsz (Btz). CASC3 is a component of the EJC (exon junction complex) which is a complex that is involved in post-transcriptional regulation of mRNA in metazoa. The complex is formed by the association of four proteins (eIF4AIII, Barentsz, Mago, and Y14), mRNA, and ATP. This domain wraps around eIF4AIII and stacks against the 5' nucleotide [, ]. ; PDB: 3EX7_D 2J0U_T 2J0S_T 2J0Q_T 2XB2_T 2HYI_J.
Probab=16.47 E-value=33 Score=28.22 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=3.2
Q ss_pred EEEEeeccCC
Q 041927 33 ELYMHDILGG 42 (239)
Q Consensus 33 ~fymHDil~G 42 (239)
.|||||--..
T Consensus 48 ~Ff~HDdR~~ 57 (129)
T PF09405_consen 48 AFFMHDDRFA 57 (129)
T ss_dssp TT--S--S--
T ss_pred CccccCCCCC
Confidence 5999999764
Done!