Query 041927
Match_columns 239
No_of_seqs 169 out of 494
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 21:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.7 2E-07 6.8E-12 79.7 11.5 101 123-238 43-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.3 7.3E-06 2.5E-10 70.4 12.6 101 123-238 51-155 (195)
3 2ooj_A Hypothetical protein; s 66.6 50 0.0017 26.6 10.8 75 142-216 40-121 (141)
4 2q03_A Uncharacterized protein 66.3 47 0.0016 26.7 9.5 74 143-216 45-124 (138)
5 3h6j_A Neuraminidase, sialidas 13.6 1.7E+02 0.0056 26.6 4.1 60 154-215 366-436 (438)
6 2dzr_A General transcription f 13.1 86 0.003 24.2 1.8 23 43-70 39-61 (99)
7 2j0s_T Protein CASC3; mRNA pro 12.0 28 0.00095 28.8 -1.4 9 33-41 51-59 (150)
8 4hpq_A ATG31, KLTH0C07942P; au 9.6 1.1E+02 0.0039 22.1 1.3 13 61-73 11-23 (69)
9 4ank_A Transthyretin; hormone 9.3 1.5E+02 0.0053 24.0 2.2 48 3-50 3-50 (147)
10 2dn5_A General transcription f 6.1 3E+02 0.01 20.7 2.3 23 43-70 39-61 (89)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.66 E-value=2e-07 Score=79.74 Aligned_cols=101 Identities=24% Similarity=0.334 Sum_probs=80.7
Q ss_pred CCCeeEEEEccccccCCCCCCcceeeeEEEEEEecC----CCceeeEEEEEEEccCCcCCeEEEeeccCCCCcceeeeEe
Q 041927 123 LGFGTITVIDDILTSNPELGSQAIGRAQGVYIASSV----DGTSQMMTFTAMIEGGEYGDSLNFYGLYKIGSTMSRLSVT 198 (239)
Q Consensus 123 ~~FGtv~ViDd~LTeGp~~~Sk~VGRAQG~yv~ss~----dg~s~~~~~t~vF~~g~y~GSL~~~G~~~~~~~~rElaVV 198 (239)
..-|..+.++++|.++.. -+.||.-+|+.+.... .+..+.-.+++.|-+ .|.|+++|..-.- +...+||.
T Consensus 43 ~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd---~GhISvQGpy~t~-~Dt~LAIT 116 (188)
T 2brj_A 43 FGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGD---YGHLSVQGPYLTY-EDSFLAIT 116 (188)
T ss_dssp SCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGG---GEEEEEEEEEETT-BCEEEEEE
T ss_pred cCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCC---CceEEEecccccc-ccceeeEe
Confidence 458999999999997653 4789999999988863 344566666777755 3789999996433 45789999
Q ss_pred eccCcccCceeEEEEEEecCCCccccCCCceEEEEEEEEe
Q 041927 199 GGTGKFKNARGFAEVRALIPPGQHVTDGAETLLRITVHLN 238 (239)
Q Consensus 199 GGTG~Fr~ArGya~~~t~~~~~q~~tdg~~~ile~~Vyl~ 238 (239)
||||.|+.|+|.+.++.+.+ -.-++|++||+
T Consensus 117 GGTGif~gA~G~Vkl~~i~~---------P~k~~yTf~L~ 147 (188)
T 2brj_A 117 GGAGIFEGAYGQVKLQQLVY---------PTKLFYTFYLK 147 (188)
T ss_dssp EEEETTTTCEEEEEEEEEET---------TTEEEEEEEEE
T ss_pred cCcceEcceEEEEEEEeecc---------CceEEEEEEEe
Confidence 99999999999999999853 13589999986
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.32 E-value=7.3e-06 Score=70.40 Aligned_cols=101 Identities=21% Similarity=0.287 Sum_probs=77.2
Q ss_pred CCCeeEEEEccccccCCCCCCcceeeeEEEEEEecC----CCceeeEEEEEEEccCCcCCeEEEeeccCCCCcceeeeEe
Q 041927 123 LGFGTITVIDDILTSNPELGSQAIGRAQGVYIASSV----DGTSQMMTFTAMIEGGEYGDSLNFYGLYKIGSTMSRLSVT 198 (239)
Q Consensus 123 ~~FGtv~ViDd~LTeGp~~~Sk~VGRAQG~yv~ss~----dg~s~~~~~t~vF~~g~y~GSL~~~G~~~~~~~~rElaVV 198 (239)
...|+++.++++|.++.. -+.||...|+.+.... .|..+--.+++.|.+ -|+|+++|..-. -...-+||+
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~GhIsvqGpy~t-~eDs~lAIT 124 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YGHISVQGPYIT-YEDSYLAIT 124 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GCEEEEEEEEET-TBCEEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---CceEEEecceec-cCceeEEEe
Confidence 459999999999999876 5789999999987752 233333455676754 489999999855 345679999
Q ss_pred eccCcccCceeEEEEEEecCCCccccCCCceEEEEEEEEe
Q 041927 199 GGTGKFKNARGFAEVRALIPPGQHVTDGAETLLRITVHLN 238 (239)
Q Consensus 199 GGTG~Fr~ArGya~~~t~~~~~q~~tdg~~~ile~~Vyl~ 238 (239)
||||.|+.|+|-+++..+.+. .-+-|+.||+
T Consensus 125 GGTGiF~Ga~GqVkl~qiv~p---------fklfytfyl~ 155 (195)
T 4h6b_A 125 GGSGIFAGCYGQAKLHQIIFP---------FKLFYTFYLQ 155 (195)
T ss_dssp EESGGGTTCEEEEEEEEEETT---------TEEEEEEEEE
T ss_pred cCcceEcccEEEEEEeEeeee---------eeEEEEEEec
Confidence 999999999999999887531 2456666664
No 3
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=66.55 E-value=50 Score=26.65 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=51.2
Q ss_pred CCcceeeeEEEEEEecC--CCceeeEEEEEEE-ccCCcCCe--EEEeeccCCCCcceeeeEee--ccCcccCceeEEEEE
Q 041927 142 GSQAIGRAQGVYIASSV--DGTSQMMTFTAMI-EGGEYGDS--LNFYGLYKIGSTMSRLSVTG--GTGKFKNARGFAEVR 214 (239)
Q Consensus 142 ~Sk~VGRAQG~yv~ss~--dg~s~~~~~t~vF-~~g~y~GS--L~~~G~~~~~~~~rElaVVG--GTG~Fr~ArGya~~~ 214 (239)
.-.+.|+.++-++.+-. ++...++++..+= .-+.-+|| |+-.|..+.......+-||= |||++...+|-..++
T Consensus 40 ~G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~~ 119 (141)
T 2ooj_A 40 YGELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAIS 119 (141)
T ss_dssp CSSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEEE
T ss_pred eeeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEE
Confidence 34567788888887776 4555555554221 11223577 66677777666678899998 999999999999998
Q ss_pred Ee
Q 041927 215 AL 216 (239)
Q Consensus 215 t~ 216 (239)
..
T Consensus 120 ~~ 121 (141)
T 2ooj_A 120 IE 121 (141)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 4
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=66.31 E-value=47 Score=26.71 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=51.4
Q ss_pred CcceeeeEEEEEEecC-CCceeeEEEEEEE-ccCCcCCe--EEEeeccCCCCcceeeeEee--ccCcccCceeEEEEEEe
Q 041927 143 SQAIGRAQGVYIASSV-DGTSQMMTFTAMI-EGGEYGDS--LNFYGLYKIGSTMSRLSVTG--GTGKFKNARGFAEVRAL 216 (239)
Q Consensus 143 Sk~VGRAQG~yv~ss~-dg~s~~~~~t~vF-~~g~y~GS--L~~~G~~~~~~~~rElaVVG--GTG~Fr~ArGya~~~t~ 216 (239)
-.+.|++++-|+.+-. ++...++++..+= .-+.-+|| |+-.|.........++-||= |||++...+|-..++..
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~~ 124 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVST 124 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEEC
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEEe
Confidence 4477888888877765 5655555554221 11233577 66667776666668899998 99999999999999764
No 5
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=13.63 E-value=1.7e+02 Score=26.61 Aligned_cols=60 Identities=25% Similarity=0.333 Sum_probs=36.1
Q ss_pred EEecCCCceeeEEEEEEEccCCcCCe-EEE-eeccCCCCcceeeeEeeccCcc---------cCceeEEEEEE
Q 041927 154 IASSVDGTSQMMTFTAMIEGGEYGDS-LNF-YGLYKIGSTMSRLSVTGGTGKF---------KNARGFAEVRA 215 (239)
Q Consensus 154 v~ss~dg~s~~~~~t~vF~~g~y~GS-L~~-~G~~~~~~~~rElaVVGGTG~F---------r~ArGya~~~t 215 (239)
+..|.....|-..|--.|.++.+||| -++ .|...+ .-..-+-|=|||.| |.|.||-.++.
T Consensus 366 farssspstwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvra 436 (438)
T 3h6j_A 366 FARSSSPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVRA 436 (438)
T ss_dssp EESSSSCSCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEEE
T ss_pred eeccCCCcceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEEe
Confidence 33344445677888888999999976 222 222211 11222445578888 67888877665
No 6
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.13 E-value=86 Score=24.23 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=18.4
Q ss_pred CCCcceeeeccccccccCCccccCCCCC
Q 041927 43 SSPTARPVTGLLGNIYNGQVPFARPVGL 70 (239)
Q Consensus 43 s~pta~~vtg~~~~~~~~~~pf~~p~~~ 70 (239)
+||.+..|.|+. -.+||-+|+.|
T Consensus 39 ~np~av~V~GLP-----egIpFr~P~~y 61 (99)
T 2dzr_A 39 SNPGSVIIEGLP-----PGIPFRKPCTF 61 (99)
T ss_dssp HCSSSEEEESCC-----TTCCSSCGGGS
T ss_pred cCCCeEEEecCC-----CCCcccCCCcc
Confidence 489999999984 45788888765
No 7
>2j0s_T Protein CASC3; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} PDB: 2j0q_I* 2xb2_T* 3ex7_D* 2j0u_T 2hyi_D*
Probab=11.99 E-value=28 Score=28.83 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=7.6
Q ss_pred EEEEeeccC
Q 041927 33 ELYMHDILG 41 (239)
Q Consensus 33 ~fymHDil~ 41 (239)
.|||||.-+
T Consensus 51 ~FymHDdR~ 59 (150)
T 2j0s_T 51 LFFEHDLRG 59 (150)
T ss_dssp TTCCCCCCC
T ss_pred cceeecccc
Confidence 599999965
No 8
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=9.59 E-value=1.1e+02 Score=22.12 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=10.8
Q ss_pred CccccCCCCCCCC
Q 041927 61 QVPFARPVGLRPP 73 (239)
Q Consensus 61 ~~pf~~p~~~~~~ 73 (239)
++||.+|.||.-|
T Consensus 11 RlPg~Rp~gFVDP 23 (69)
T 4hpq_A 11 RVAGRARNGFVDP 23 (69)
T ss_dssp ECSSCCCSCCCCC
T ss_pred EecCCCCCCCCCC
Confidence 7899999998744
No 9
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=9.25 E-value=1.5e+02 Score=23.96 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=15.0
Q ss_pred chhhHHHHHHHHHHHHHhhhhhccCCcceEEEEEeeccCCCCCcceee
Q 041927 3 KRLSAFVFLGTMIALIQAVIITATGEVPVLELYMHDILGGSSPTARPV 50 (239)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~fymHDil~Gs~pta~~v 50 (239)
+....+++|+.++++..|-.+.+.+...+|+--.=|...|....-.+|
T Consensus 3 ~~~~~l~~la~l~~~s~a~p~~~~~sk~PLTtHVLDt~~G~PA~gv~V 50 (147)
T 4ank_A 3 SHRLLLLCLAGLVFVSEAGPTGTGESKCPLMVKVLDAVRGSPAINVAV 50 (147)
T ss_dssp ---------------------------CCEEEEEEETTTTEECCSCEE
T ss_pred hHHHHHHHHHHHHhhcccCCcCCCCCCCCeEEEEEeCCCCcCCCCCEE
Confidence 333344666666666666655555566688888889988865444444
No 10
>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=6.10 E-value=3e+02 Score=20.69 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=17.1
Q ss_pred CCCcceeeeccccccccCCccccCCCCC
Q 041927 43 SSPTARPVTGLLGNIYNGQVPFARPVGL 70 (239)
Q Consensus 43 s~pta~~vtg~~~~~~~~~~pf~~p~~~ 70 (239)
++|++..|.|+. -.+||-+|+-+
T Consensus 39 ~~p~~v~V~GlP-----~gi~FR~P~~y 61 (89)
T 2dn5_A 39 DSPDAVEVTGLP-----DDIPFRNPNTY 61 (89)
T ss_dssp HCTTSEEEESCC-----TTCCCCCSSSC
T ss_pred cCCCeEEEEeCC-----CCccccCCccc
Confidence 478999999974 45677777764
Done!