Query 041930
Match_columns 320
No_of_seqs 188 out of 723
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 12:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1162 Predicted small molecu 99.9 8.6E-28 1.9E-32 246.6 11.9 100 1-165 1-100 (617)
2 PF03105 SPX: SPX domain; Int 99.9 2.9E-22 6.2E-27 182.6 14.4 140 1-167 1-140 (275)
3 KOG1161 Protein involved in va 99.7 5.4E-17 1.2E-21 155.4 9.2 83 1-157 1-83 (310)
4 COG5036 SPX domain-containing 99.2 2.3E-11 5.1E-16 120.3 8.0 80 1-157 1-80 (509)
5 COG5408 SPX domain-containing 99.2 4.2E-11 9.1E-16 114.6 7.9 37 1-37 1-37 (296)
6 cd02682 MIT_AAA_Arch MIT: doma 41.4 40 0.00087 26.5 3.7 24 133-156 47-70 (75)
7 KOG4466 Component of histone d 40.2 56 0.0012 32.0 5.2 43 120-162 15-57 (291)
8 PF05300 DUF737: Protein of un 39.8 47 0.001 30.5 4.5 29 127-155 142-170 (187)
9 PF15389 DUF4612: Domain of un 30.8 36 0.00079 29.0 2.1 18 116-133 87-104 (115)
10 cd02683 MIT_1 MIT: domain cont 29.2 1.1E+02 0.0024 23.8 4.4 39 120-158 33-72 (77)
11 PF14193 DUF4315: Domain of un 27.6 2.3E+02 0.0049 22.8 6.0 34 125-162 4-37 (83)
12 PF10267 Tmemb_cc2: Predicted 26.9 1.8E+02 0.0038 29.8 6.5 42 123-164 227-275 (395)
13 KOG3850 Predicted membrane pro 26.6 1.9E+02 0.0041 29.8 6.5 42 123-164 282-323 (455)
14 PF07352 Phage_Mu_Gam: Bacteri 22.4 1.8E+02 0.0039 25.1 5.0 45 122-166 21-65 (149)
15 COG5509 Uncharacterized small 22.3 1.6E+02 0.0035 22.6 3.9 28 141-168 26-53 (65)
16 PF06556 ASFV_p27: IAP-like pr 21.1 49 0.0011 28.1 1.1 17 1-17 40-61 (131)
No 1
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.6e-28 Score=246.62 Aligned_cols=100 Identities=61% Similarity=1.003 Sum_probs=87.8
Q ss_pred CcchhhhhhcCchhHHHhccChhhHHHHHHHHHHHHhhhccCCCCCCCCCCCccchhhhhhhhhhccccccCCCCCCCCC
Q 041930 1 MKFGKEFAAQMVPEWQEAYMDYEYLKALLKEIQRFKRRNRAAAAPGGVGAGAGRLKRKMTLYKAFSGLTQKHNDPMSPSS 80 (320)
Q Consensus 1 MKFGK~L~~q~VPEWkdaYIDYk~LKKlIK~i~~~~~~~~~~~~~~~~~~~g~sl~~~lsl~~~fsg~~~r~~~~~s~~~ 80 (320)
|||||+|++|+||||+++||||+.||++||+|...+. .
T Consensus 1 MKFgk~~~~q~~pEW~~ay~dY~~lK~~l~~i~~~~~-----~------------------------------------- 38 (617)
T KOG1162|consen 1 MKFGKELESQLVPEWRQAYIDYKYLKKLLKEIIENKP-----S------------------------------------- 38 (617)
T ss_pred CcchHHHHHhcCHHHHHHhhhHHHHHHHHHHHHhcCC-----C-------------------------------------
Confidence 9999999999999999999999999999999995321 0
Q ss_pred CCCCcchhhhhHhhccccCCCCcchhhhhcccCCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 81 ASSSDIESQSAILVNSVSRDGNHRYETTFLMSSDEGGEYELVYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFI 160 (320)
Q Consensus 81 ~~~~d~e~q~~i~v~~~~~dgs~~yqt~~l~~~ee~~e~e~~Ff~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~~Li 160 (320)
.++|++++..+++++.+.+||++||.||+|||+||++|++|+.+|++.|++||++|+
T Consensus 39 -----------------------~~~t~~~~~~~~~~~~~~~Ff~~ld~el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~ 95 (617)
T KOG1162|consen 39 -----------------------SEETTFLMVSEEGGEFEEVFFRRLDEELNKVNKFYKEKVKEAREEAEELNKQLDALI 95 (617)
T ss_pred -----------------------cCccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012444555566778899999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 041930 161 AFSIK 165 (320)
Q Consensus 161 ~~R~~ 165 (320)
++|.+
T Consensus 96 ~~r~~ 100 (617)
T KOG1162|consen 96 ALRVK 100 (617)
T ss_pred Hhhcc
Confidence 99986
No 2
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=99.88 E-value=2.9e-22 Score=182.57 Aligned_cols=140 Identities=27% Similarity=0.423 Sum_probs=84.9
Q ss_pred CcchhhhhhcCchhHHHhccChhhHHHHHHHHHHHHhhhccCCCCCCCCCCCccchhhhhhhhhhccccccCCCCCCCCC
Q 041930 1 MKFGKEFAAQMVPEWQEAYMDYEYLKALLKEIQRFKRRNRAAAAPGGVGAGAGRLKRKMTLYKAFSGLTQKHNDPMSPSS 80 (320)
Q Consensus 1 MKFGK~L~~q~VPEWkdaYIDYk~LKKlIK~i~~~~~~~~~~~~~~~~~~~g~sl~~~lsl~~~fsg~~~r~~~~~s~~~ 80 (320)
|||||+|+.++||||+++||||+.|||+||++............ ....+....+ ...+... +.. +..+
T Consensus 1 MKFgk~L~~~~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~-~~~-~~~~-- 68 (275)
T PF03105_consen 1 MKFGKQLQENAVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAE------TLSSISISSS--SSSSSRS-SSN-SFES-- 68 (275)
T ss_pred CCchHHHHHhcCHHHHHHhCCHHHHHHHHHHHHhhhhccccccc------ccchhhhhhh--hhccccc-ccc-cccc--
Confidence 99999999999999999999999999999999976543211000 0000000000 0000000 000 0000
Q ss_pred CCCCcchhhhhHhhccccCCCCcchhhhhcccCCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 81 ASSSDIESQSAILVNSVSRDGNHRYETTFLMSSDEGGEYELVYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFI 160 (320)
Q Consensus 81 ~~~~d~e~q~~i~v~~~~~dgs~~yqt~~l~~~ee~~e~e~~Ff~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~~Li 160 (320)
...+. .. ..+... ...........+..||.+|+.||+|||.||.+++.++..++..|.+|+..+.
T Consensus 69 ---~~~~~--~~-----~~~~~~-----~~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~ 133 (275)
T PF03105_consen 69 ---TSPSS--SN-----TSPSSS-----NSEQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELR 133 (275)
T ss_pred ---ccccc--cc-----cccccc-----ccchhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 000000 0000011223477999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 041930 161 AFSIKVE 167 (320)
Q Consensus 161 ~~R~~~~ 167 (320)
..+....
T Consensus 134 ~~~~~~~ 140 (275)
T PF03105_consen 134 EQRSKSS 140 (275)
T ss_pred hhhhhhc
Confidence 9987663
No 3
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=99.69 E-value=5.4e-17 Score=155.37 Aligned_cols=83 Identities=37% Similarity=0.607 Sum_probs=69.7
Q ss_pred CcchhhhhhcCchhHHHhccChhhHHHHHHHHHHHHhhhccCCCCCCCCCCCccchhhhhhhhhhccccccCCCCCCCCC
Q 041930 1 MKFGKEFAAQMVPEWQEAYMDYEYLKALLKEIQRFKRRNRAAAAPGGVGAGAGRLKRKMTLYKAFSGLTQKHNDPMSPSS 80 (320)
Q Consensus 1 MKFGK~L~~q~VPEWkdaYIDYk~LKKlIK~i~~~~~~~~~~~~~~~~~~~g~sl~~~lsl~~~fsg~~~r~~~~~s~~~ 80 (320)
|||||+|+...+|||+++||||+.|||+||++.. +... .++
T Consensus 1 MkFGk~L~~~~l~ew~~~yinYk~LKK~lK~~~~-------~~~~------------------------------~~~-- 41 (310)
T KOG1161|consen 1 MKFGKYLKEELLPEWKDKYINYKELKKLLKQYSI-------QTAD------------------------------SSP-- 41 (310)
T ss_pred CchhHHHHHhhhhhHhhhhcCHHHHHHHHHHhcc-------cccc------------------------------CCc--
Confidence 9999999999999999999999999999998652 1100 000
Q ss_pred CCCCcchhhhhHhhccccCCCCcchhhhhcccCCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 81 ASSSDIESQSAILVNSVSRDGNHRYETTFLMSSDEGGEYELVYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMD 157 (320)
Q Consensus 81 ~~~~d~e~q~~i~v~~~~~dgs~~yqt~~l~~~ee~~e~e~~Ff~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~ 157 (320)
++. .+..|++.||+||+|||.||.+|++|++.|+..|++|++
T Consensus 42 -------------------~~~----------------~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~ 83 (310)
T KOG1161|consen 42 -------------------DSR----------------DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKID 83 (310)
T ss_pred -------------------ccc----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 266899999999999999999999999999999999997
No 4
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.22 E-value=2.3e-11 Score=120.29 Aligned_cols=80 Identities=34% Similarity=0.521 Sum_probs=68.2
Q ss_pred CcchhhhhhcCchhHHHhccChhhHHHHHHHHHHHHhhhccCCCCCCCCCCCccchhhhhhhhhhccccccCCCCCCCCC
Q 041930 1 MKFGKEFAAQMVPEWQEAYMDYEYLKALLKEIQRFKRRNRAAAAPGGVGAGAGRLKRKMTLYKAFSGLTQKHNDPMSPSS 80 (320)
Q Consensus 1 MKFGK~L~~q~VPEWkdaYIDYk~LKKlIK~i~~~~~~~~~~~~~~~~~~~g~sl~~~lsl~~~fsg~~~r~~~~~s~~~ 80 (320)
|+||+.|...++|+|++.||||..||+.||+-.. . +.
T Consensus 1 M~Fg~~L~~~ly~p~k~~YinYe~LK~~lK~~~~--------~---------------------------------~~-- 37 (509)
T COG5036 1 MRFGKKLKNNLYPPYKYSYINYENLKKLLKESEE--------E---------------------------------GS-- 37 (509)
T ss_pred CchhHHHHhccCcccccccCCHHHHHHHHhhccc--------c---------------------------------CC--
Confidence 9999999999999999999999999999998110 0 00
Q ss_pred CCCCcchhhhhHhhccccCCCCcchhhhhcccCCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 81 ASSSDIESQSAILVNSVSRDGNHRYETTFLMSSDEGGEYELVYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMD 157 (320)
Q Consensus 81 ~~~~d~e~q~~i~v~~~~~dgs~~yqt~~l~~~ee~~e~e~~Ff~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~ 157 (320)
|++ +.|..|.+.||.||+||..|...|..|+++|+..|++|.+
T Consensus 38 --------------------w~e--------------~dEsdFVe~Ld~eLeKVY~F~~~k~~ev~erl~~leeq~~ 80 (509)
T COG5036 38 --------------------WSE--------------SDESDFVEELDKELEKVYGFQLSKYSEVMERLRTLEEQTD 80 (509)
T ss_pred --------------------Ccc--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 211 1155799999999999999999999999999999999988
No 5
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.19 E-value=4.2e-11 Score=114.65 Aligned_cols=37 Identities=41% Similarity=0.785 Sum_probs=35.1
Q ss_pred CcchhhhhhcCchhHHHhccChhhHHHHHHHHHHHHh
Q 041930 1 MKFGKEFAAQMVPEWQEAYMDYEYLKALLKEIQRFKR 37 (320)
Q Consensus 1 MKFGK~L~~q~VPEWkdaYIDYk~LKKlIK~i~~~~~ 37 (320)
||||+.|..++||||+++||||+.|||+|+.|+....
T Consensus 1 MKF~~~L~~naVPEWss~Y~dYk~lKKlI~~l~~~~~ 37 (296)
T COG5408 1 MKFGHSLQFNAVPEWSSKYIDYKQLKKLIYSLQKDQL 37 (296)
T ss_pred CcchhhhhhccchhhHHhhhhHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999997654
No 6
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=41.42 E-value=40 Score=26.52 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 133 KVDKFCRAKVQEVEKDAAILNKQM 156 (320)
Q Consensus 133 KVN~FY~~Ke~E~~~R~~~L~kQl 156 (320)
+-..+|+.|..|++.|++.|++++
T Consensus 47 ~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 47 PTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 347789999999999999999986
No 7
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=40.25 E-value=56 Score=31.95 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=35.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 120 ELVYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFIAF 162 (320)
Q Consensus 120 e~~Ff~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~~Li~~ 162 (320)
+..|+...+.=.+--+.||..|+..+..|+..|+.||..|.+-
T Consensus 15 drrr~~~~~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g 57 (291)
T KOG4466|consen 15 DRRRANEESEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQG 57 (291)
T ss_pred HHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666666566677899999999999999999999987765
No 8
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=39.83 E-value=47 Score=30.49 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 127 LDDEFNKVDKFCRAKVQEVEKDAAILNKQ 155 (320)
Q Consensus 127 LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQ 155 (320)
=+.||.+.+.||+++.+-+-++-..+.++
T Consensus 142 ke~el~~~d~fykeql~~le~k~~e~yk~ 170 (187)
T PF05300_consen 142 KEAELKKQDAFYKEQLARLEEKNAEFYKV 170 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999998887776665554
No 9
>PF15389 DUF4612: Domain of unknown function (DUF4612)
Probab=30.82 E-value=36 Score=29.02 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=14.6
Q ss_pred CchhHHHHHHHHhHHHHH
Q 041930 116 GGEYELVYFRRLDDEFNK 133 (320)
Q Consensus 116 ~~e~e~~Ff~~LD~ELnK 133 (320)
..+..+.||++||+-++|
T Consensus 87 iS~SQqdFFRMLDeKIek 104 (115)
T PF15389_consen 87 ISESQQDFFRMLDEKIEK 104 (115)
T ss_pred hhHHHHHHHHHHHHHHHc
Confidence 345678999999998876
No 10
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=29.24 E-value=1.1e+02 Score=23.79 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=30.8
Q ss_pred HHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 120 ELVYFRRLDDEF-NKVDKFCRAKVQEVEKDAAILNKQMDA 158 (320)
Q Consensus 120 e~~Ff~~LD~EL-nKVN~FY~~Ke~E~~~R~~~L~kQl~~ 158 (320)
...|...|..|= .+....|+.|..+++.|++.|...|..
T Consensus 33 ie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~ 72 (77)
T cd02683 33 IDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQ 72 (77)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 336777776663 247888999999999999999998764
No 11
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=27.57 E-value=2.3e+02 Score=22.76 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=25.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 125 RRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFIAF 162 (320)
Q Consensus 125 ~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~~Li~~ 162 (320)
.+|+.|+.|+- .|..|+..|+..|+.|...+-+.
T Consensus 4 eKi~~eieK~k----~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 4 EKIRAEIEKTK----EKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999975 67788888888888776665554
No 12
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=26.85 E-value=1.8e+02 Score=29.82 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=32.7
Q ss_pred HHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 123 YFRRLDDEFNKV-------DKFCRAKVQEVEKDAAILNKQMDAFIAFSI 164 (320)
Q Consensus 123 Ff~~LD~ELnKV-------N~FY~~Ke~E~~~R~~~L~kQl~~Li~~R~ 164 (320)
....|+.+++++ ..|+.+...|-.-|++.|+.||+.+.+++.
T Consensus 227 ~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq 275 (395)
T PF10267_consen 227 SQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQ 275 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 458888899999999999999999999965
No 13
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=26.57 E-value=1.9e+02 Score=29.78 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=36.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 123 YFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFIAFSI 164 (320)
Q Consensus 123 Ff~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~~Li~~R~ 164 (320)
=|..|.+++.+=..||.+-.+|=+=|.+.|+.||+.|.+++.
T Consensus 282 sye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQ 323 (455)
T KOG3850|consen 282 SYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQ 323 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355677778888899999999988899999999999999865
No 14
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=22.39 E-value=1.8e+02 Score=25.06 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=39.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041930 122 VYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFIAFSIKV 166 (320)
Q Consensus 122 ~Ff~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~~Li~~R~~~ 166 (320)
..-..++++++.+...|....+.+..+.+.|+..|..+...+..-
T Consensus 21 ~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e 65 (149)
T PF07352_consen 21 RIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDE 65 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHh
Confidence 344678999999999999999999999999999999999875443
No 15
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=22.28 E-value=1.6e+02 Score=22.55 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 041930 141 KVQEVEKDAAILNKQMDAFIAFSIKVEN 168 (320)
Q Consensus 141 Ke~E~~~R~~~L~kQl~~Li~~R~~~~~ 168 (320)
-+.|+.+|+..|+..+..|.+.|.+..+
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4788999999999999999999988843
No 16
>PF06556 ASFV_p27: IAP-like protein p27 C-terminus; InterPro: IPR010549 This entry represents the C-terminal region of the African swine fever virus (ASFV) IAP-like protein p27. This domain is found in conjunction with IPR001370 from INTERPRO. It has been suggested that the domain may be incoded by the gene involved in aspects of infection in the arthropod host, ticks of the genus Ornithodoros [].
Probab=21.07 E-value=49 Score=28.06 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=13.1
Q ss_pred Ccchhh-----hhhcCchhHHH
Q 041930 1 MKFGKE-----FAAQMVPEWQE 17 (320)
Q Consensus 1 MKFGK~-----L~~q~VPEWkd 17 (320)
|+|||- |....+|.|+.
T Consensus 40 mgfsK~fmrFiLaNafiPpyrk 61 (131)
T PF06556_consen 40 MGFSKCFMRFILANAFIPPYRK 61 (131)
T ss_pred cCCCcceEEEEeecccCCcHHH
Confidence 889993 45567999986
Done!