Query 041930
Match_columns 320
No_of_seqs 188 out of 723
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 21:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fla_A Regulation of nuclear P 44.4 72 0.0025 27.0 7.5 48 120-167 84-141 (152)
2 2p2u_A HOST-nuclease inhibitor 33.7 87 0.003 26.7 6.4 42 123-164 35-76 (171)
3 2akf_A Coronin-1A; coiled coil 32.1 96 0.0033 19.5 4.9 28 126-157 3-30 (32)
4 3pp5_A BRK1, protein brick1; t 29.4 1.7E+02 0.006 21.9 6.6 41 122-162 20-67 (73)
5 2l5g_B Putative uncharacterize 28.0 1E+02 0.0035 20.9 4.5 28 122-153 9-36 (42)
6 3p8c_E Probable protein brick1 27.2 2E+02 0.0068 21.7 6.6 38 122-159 20-57 (75)
7 3t98_B Nucleoporin NUP58/NUP45 24.2 1.1E+02 0.0037 23.9 4.8 27 136-162 8-34 (93)
8 2oxj_A Hybrid alpha/beta pepti 20.3 1.5E+02 0.0051 19.2 4.0 24 139-162 7-30 (34)
9 3m48_A General control protein 18.3 1.8E+02 0.0061 18.7 4.0 24 139-162 6-29 (33)
10 1kd8_B GABH BLL, GCN4 acid bas 16.2 2.2E+02 0.0077 18.6 4.1 24 139-162 7-30 (36)
No 1
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=44.37 E-value=72 Score=26.97 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=40.8
Q ss_pred HHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041930 120 ELVYFRRLDDE----------FNKVDKFCRAKVQEVEKDAAILNKQMDAFIAFSIKVE 167 (320)
Q Consensus 120 e~~Ff~~LD~E----------LnKVN~FY~~Ke~E~~~R~~~L~kQl~~Li~~R~~~~ 167 (320)
-..|..+|..| |+....||.....++..+++.....+..+...|.+++
T Consensus 84 L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~ 141 (152)
T 4fla_A 84 LAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELK 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777 5568889999999999999999999999999998885
No 2
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=33.72 E-value=87 Score=26.72 Aligned_cols=42 Identities=7% Similarity=0.112 Sum_probs=38.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 123 YFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFIAFSI 164 (320)
Q Consensus 123 Ff~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~~Li~~R~ 164 (320)
--..+++|++.|...|......+..+.+.|+..|..|+..+.
T Consensus 35 i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~r 76 (171)
T 2p2u_A 35 IEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLNK 76 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 335789999999999999999999999999999999999863
No 3
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.14 E-value=96 Score=19.54 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=19.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 126 RLDDEFNKVDKFCRAKVQEVEKDAAILNKQMD 157 (320)
Q Consensus 126 ~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~ 157 (320)
+|++++.|.|.- ++++.+|++.|+.-++
T Consensus 3 rlee~~r~l~~i----vq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAI----VQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 578888887764 4566677777776554
No 4
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=29.36 E-value=1.7e+02 Score=21.94 Aligned_cols=41 Identities=22% Similarity=0.422 Sum_probs=23.1
Q ss_pred HHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 122 VYFRRLDDEFNKVDKFC-------RAKVQEVEKDAAILNKQMDAFIAF 162 (320)
Q Consensus 122 ~Ff~~LD~ELnKVN~FY-------~~Ke~E~~~R~~~L~kQl~~Li~~ 162 (320)
+|...+..-+-|+-.|- +.|...+.+|+..|+.+|..|.+.
T Consensus 20 e~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAk 67 (73)
T 3pp5_A 20 EFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEAT 67 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666655554 455555555555555555555443
No 5
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.97 E-value=1e+02 Score=20.91 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 122 VYFRRLDDEFNKVDKFCRAKVQEVEKDAAILN 153 (320)
Q Consensus 122 ~Ff~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~ 153 (320)
.=+.++|+|+.|+. +|..++..+...|+
T Consensus 9 qkI~kVdrEI~Kte----~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 9 QNMDRVDREITMVE----QQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34568899998874 34444444444443
No 6
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=27.22 E-value=2e+02 Score=21.74 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=20.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 122 VYFRRLDDEFNKVDKFCRAKVQEVEKDAAILNKQMDAF 159 (320)
Q Consensus 122 ~Ff~~LD~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~~L 159 (320)
+|...+..-+-++-.|-..=..-|..|+..|+..|..|
T Consensus 20 e~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~L 57 (75)
T 3p8c_E 20 EYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTAL 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555444445554444444433
No 7
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=24.22 E-value=1.1e+02 Score=23.87 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 136 KFCRAKVQEVEKDAAILNKQMDAFIAF 162 (320)
Q Consensus 136 ~FY~~Ke~E~~~R~~~L~kQl~~Li~~ 162 (320)
.||..+..++.+|+..+..||+.+-.+
T Consensus 8 ~yF~~lv~~fe~rL~~Yr~~IeelE~~ 34 (93)
T 3t98_B 8 DYFRVLVQQFEVQLQQYRQQIEELENH 34 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666655544
No 8
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.35 E-value=1.5e+02 Score=19.19 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 139 RAKVQEVEKDAAILNKQMDAFIAF 162 (320)
Q Consensus 139 ~~Ke~E~~~R~~~L~kQl~~Li~~ 162 (320)
..|++|++.+-..|++++..|.++
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 357888889999999998887654
No 9
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=18.31 E-value=1.8e+02 Score=18.73 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 139 RAKVQEVEKDAAILNKQMDAFIAF 162 (320)
Q Consensus 139 ~~Ke~E~~~R~~~L~kQl~~Li~~ 162 (320)
..|++|++.+-..|+.++..|.++
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 357888888999999988887654
No 10
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=16.23 E-value=2.2e+02 Score=18.57 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 139 RAKVQEVEKDAAILNKQMDAFIAF 162 (320)
Q Consensus 139 ~~Ke~E~~~R~~~L~kQl~~Li~~ 162 (320)
..|++|+..+-..|+.++..|..+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457888888888898888877654
Done!