Query 041930
Match_columns 320
No_of_seqs 188 out of 723
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 21:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hf5a1 a.39.1.5 (A:81-113) Tr 16.3 26 0.0019 20.9 1.2 11 309-319 2-12 (33)
2 d2d8da1 a.130.1.1 (A:3-82) Cho 14.4 98 0.0071 20.8 4.3 26 141-166 2-27 (80)
3 d1wfda_ a.7.14.1 (A:) Hypothet 14.1 1.1E+02 0.008 21.5 4.6 36 122-157 44-80 (93)
4 d1ybza1 a.130.1.1 (A:2-75) mon 10.8 1.6E+02 0.012 19.6 4.5 26 141-166 2-27 (74)
5 d1ecma_ a.130.1.1 (A:) Chorism 9.1 1.8E+02 0.013 19.7 4.3 25 142-166 3-27 (91)
6 d2h9da1 a.130.1.1 (A:1-94) Sal 8.7 1.7E+02 0.013 20.2 4.1 25 142-166 10-34 (94)
7 d1r8ea1 a.6.1.3 (A:3-120) Tran 7.7 3E+02 0.022 19.1 5.2 39 128-166 72-110 (118)
8 d1khba1 c.91.1.1 (A:260-622) C 7.4 1.7E+02 0.012 26.0 4.2 34 125-158 324-362 (363)
9 d1yf2a2 d.287.1.2 (A:221-425) 7.1 3.5E+02 0.026 19.2 5.6 22 145-166 171-192 (205)
10 d1ydxa2 d.287.1.2 (A:194-374) 6.6 3.9E+02 0.028 19.0 5.6 22 145-166 151-172 (181)
No 1
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=16.34 E-value=26 Score=20.90 Aligned_cols=11 Identities=36% Similarity=0.800 Sum_probs=9.3
Q ss_pred HHHHHHHhhhc
Q 041930 309 EDQLKRAFVEF 319 (320)
Q Consensus 309 E~~l~~afvef 319 (320)
|+.|+.||..|
T Consensus 2 eeel~eAF~~F 12 (33)
T d2hf5a1 2 EEEIREAFRVF 12 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 67899999876
No 2
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=14.40 E-value=98 Score=20.82 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041930 141 KVQEVEKDAAILNKQMDAFIAFSIKV 166 (320)
Q Consensus 141 Ke~E~~~R~~~L~kQl~~Li~~R~~~ 166 (320)
+.+++..+++.+..||-.|+..|..+
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll~~R~~~ 27 (80)
T d2d8da1 2 RIQALRKEVDRVNREILRLLSERGRL 27 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998765
No 3
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.11 E-value=1.1e+02 Score=21.47 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041930 122 VYFRRLDDEFN-KVDKFCRAKVQEVEKDAAILNKQMD 157 (320)
Q Consensus 122 ~Ff~~LD~ELn-KVN~FY~~Ke~E~~~R~~~L~kQl~ 157 (320)
.|...|..|-+ ..-..++.|..+++.|++.|...|.
T Consensus 44 ~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~LK~~l~ 80 (93)
T d1wfda_ 44 MLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLD 80 (93)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544433 3456899999999999999977553
No 4
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=10.82 E-value=1.6e+02 Score=19.59 Aligned_cols=26 Identities=8% Similarity=0.281 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041930 141 KVQEVEKDAAILNKQMDAFIAFSIKV 166 (320)
Q Consensus 141 Ke~E~~~R~~~L~kQl~~Li~~R~~~ 166 (320)
..+++..+++.+..||-.|+..|..+
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll~~R~~~ 27 (74)
T d1ybza1 2 TLKLLRKEIDKIDNQIISLLKKRLEI 27 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999998766
No 5
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=9.10 E-value=1.8e+02 Score=19.75 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 041930 142 VQEVEKDAAILNKQMDAFIAFSIKV 166 (320)
Q Consensus 142 e~E~~~R~~~L~kQl~~Li~~R~~~ 166 (320)
..+++.+++.|..||-.|+..|..+
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l 27 (91)
T d1ecma_ 3 LLALREKISALDEKLLALLAERREL 27 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999888765
No 6
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.72 E-value=1.7e+02 Score=20.20 Aligned_cols=25 Identities=0% Similarity=0.107 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 041930 142 VQEVEKDAAILNKQMDAFIAFSIKV 166 (320)
Q Consensus 142 e~E~~~R~~~L~kQl~~Li~~R~~~ 166 (320)
..+++.+++.+..||-.|++.|.++
T Consensus 10 L~~lR~~ID~ID~~i~~LL~~R~~l 34 (94)
T d2h9da1 10 LADIREAIDRIDLDIVQALGRRMDY 34 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999877
No 7
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=7.66 E-value=3e+02 Score=19.14 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041930 128 DDEFNKVDKFCRAKVQEVEKDAAILNKQMDAFIAFSIKV 166 (320)
Q Consensus 128 D~ELnKVN~FY~~Ke~E~~~R~~~L~kQl~~Li~~R~~~ 166 (320)
+...+.+...+..+..++.++.+.|+.....|..++..+
T Consensus 72 ~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~l 110 (118)
T d1r8ea1 72 DLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRM 110 (118)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666677777777666666555555544433
No 8
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.37 E-value=1.7e+02 Score=25.98 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=23.9
Q ss_pred HHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 041930 125 RRLDDEFNKVDKFCRAKVQ-----EVEKDAAILNKQMDA 158 (320)
Q Consensus 125 ~~LD~ELnKVN~FY~~Ke~-----E~~~R~~~L~kQl~~ 158 (320)
...-.|++.+.+||.++.. |+.++++.|+++|..
T Consensus 324 ~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~ 362 (363)
T d1khba1 324 EFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQ 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 4567889999999977653 666666666666543
No 9
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=7.08 E-value=3.5e+02 Score=19.18 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 041930 145 VEKDAAILNKQMDAFIAFSIKV 166 (320)
Q Consensus 145 ~~~R~~~L~kQl~~Li~~R~~~ 166 (320)
+.++.+.++++++.|.++|..+
T Consensus 171 id~~i~~~~~~~~~l~~~k~~L 192 (205)
T d1yf2a2 171 VDKSIELKKQKKEKLQRMKKKI 192 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666777777666554
No 10
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=6.59 E-value=3.9e+02 Score=19.00 Aligned_cols=22 Identities=5% Similarity=0.208 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 041930 145 VEKDAAILNKQMDAFIAFSIKV 166 (320)
Q Consensus 145 ~~~R~~~L~kQl~~Li~~R~~~ 166 (320)
+.++++.++++++.|.++|..+
T Consensus 151 ~d~~i~~~~~~i~~l~~lk~~L 172 (181)
T d1ydxa2 151 LDQKLDQYKKELSSLTVIRDTL 172 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777766554
Done!