BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041932
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/282 (74%), Positives = 249/282 (88%)
Query: 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60
NST+ FI+ENNAG A+ ALMA LAPK KVLRDGKW E++AAILVPGD++S+KLGDI+PAD
Sbjct: 106 NSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPAD 165
Query: 61 ARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVH 120
ARLLEGDPL +DQSALTGESL ++K PG V+SGSTCK+GEI+AVVIATGVHTF G+A H
Sbjct: 166 ARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAH 225
Query: 121 LVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGV 180
LVD+TN VGHFQK+LTA+G +CICSIA+G+++EIIVMY +Q R+YR G+DNLLV LIGG+
Sbjct: 226 LVDSTNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGI 285
Query: 181 PIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNL 240
PIA+PTVLSV MAIGS +LS QG ITKRMTAI MAGMDVLC DKTGTLTLNKL+VDKNL
Sbjct: 286 PIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNL 345
Query: 241 IEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKK 282
+E+F KGV+ D V+L AA AS++EN D IDAA+VGMLADPK+
Sbjct: 346 VEVFCKGVEKDQVLLFAAMASRVENQDAIDAAMVGMLADPKE 387
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 52/57 (91%)
Query: 292 LSGDQLAIAKETGRRLGMGTNMYPSSALLGQDRDDSIVALPVDELIEKADGFAGVFP 348
++GDQLAI KETGRRLGMGTNMYPSSALLG +D ++ ++PV+ELIEKADGFAGVFP
Sbjct: 510 ITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFP 566
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 168/286 (58%), Gaps = 18/286 (6%)
Query: 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60
N+ V F+QE AG+ L LA KA VLRDG KE +A +VPGD++ V+ G I+PAD
Sbjct: 154 NAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPAD 213
Query: 61 ARLLEGDP-LTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAV 119
R++ D L +DQSALTGESL + K GD V++ S KRGE V+ ATG +TF+GRA
Sbjct: 214 GRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEAFVVITATGDNTFVGRAA 273
Query: 120 HLVDT-TNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTG-----LDNLL 173
LV+ + GHF ++L +G + + L++ + + YR+ L+ L
Sbjct: 274 ALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSF------YRSNPIVQILEFTL 327
Query: 174 VPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNK 233
I GVP+ LP V++ MA+G+ L+ + I ++++AI +AG+++LC DKTGTLT NK
Sbjct: 328 AITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNK 387
Query: 234 LTVDKNLIEIFAKGVDVDTVVLMA--ARASQLENLDVIDAAVVGML 277
L++ GVD + ++L A A + + + +D ID A + L
Sbjct: 388 LSLHDPYT---VAGVDPEDLMLTACLAASRKKKGIDAIDKAFLKSL 430
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 292 LSGDQLAIAKETGRRLGMGTNMYPSSALLGQDRDDSIVALPVDELIEKADGFAGVFP 348
L+GD + IA+ET R+LG+GTN+Y + L D + V + +E ADGFA VFP
Sbjct: 557 LTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGD-MPGSEVYDFVEAADGFAEVFP 612
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 30/255 (11%)
Query: 3 TVCF--IQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60
T CF QE + + + +A V+R+G+ +A +V GD++ VK GD +PAD
Sbjct: 118 TGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD 177
Query: 61 ARLLEGDPLTIDQSALTGESLTISKGPG----------DCVYSGSTCKRGEIQAVVIATG 110
R++ + +D S+LTGES ++ P + + + C G + +V+ TG
Sbjct: 178 LRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTG 237
Query: 111 VHTFLGRAVHLVD--------TTNHVGHFQKILTAVGKYC-ICSIALGLILEIIVMYAVQ 161
T +GR L + HF I+T V + + L LILE + AV
Sbjct: 238 DRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVI 297
Query: 162 HREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVL 221
L+ ++ VP L ++V + + +++++ + + K + A+ + +
Sbjct: 298 F---------LIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTI 348
Query: 222 CCDKTGTLTLNKLTV 236
C DKTGTLT N++TV
Sbjct: 349 CSDKTGTLTQNRMTV 363
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 29/239 (12%)
Query: 18 ALMAHLAPK-AKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSAL 76
A +L P+ A V+RDG + +A LV GD++ +K GD VPAD R+L+ +D S+L
Sbjct: 169 ASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSL 228
Query: 77 TGESLTISKGPGDCVYS-----------GSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT 125
TGES ++ P +C + + C G Q +V+ TG T +GR L
Sbjct: 229 TGESEPQTRSP-ECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGV 287
Query: 126 NH--------VGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLI 177
+ + HF I+ + +I G I+ M + + R + + ++
Sbjct: 288 ENEKTPIAIEIEHFVDIIAGL------AILFGATFFIVAM-CIGYTFLR-AMVFFMAIVV 339
Query: 178 GGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTV 236
VP L ++V +++ +++L+ + + K + A+ + V+C DKTGTLT N++TV
Sbjct: 340 AYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTV 398
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 30/255 (11%)
Query: 3 TVCF--IQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60
T CF QE + + + +A V+R+G+ +A +V GD++ VK GD +PAD
Sbjct: 112 TGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD 171
Query: 61 ARLLEGDPLTIDQSALTGESLTISKGPG----------DCVYSGSTCKRGEIQAVVIATG 110
R++ + +D S+LTGES ++ P + + + C G + +V+ TG
Sbjct: 172 LRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTG 231
Query: 111 VHTFLGRAVHLVD--------TTNHVGHFQKILTAVGKYC-ICSIALGLILEIIVMYAVQ 161
T +GR L + HF I+T V + + L LILE + AV
Sbjct: 232 DRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVI 291
Query: 162 HREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVL 221
L+ ++ VP L ++V + + +++++ + + K + A+ + +
Sbjct: 292 F---------LIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTI 342
Query: 222 CCDKTGTLTLNKLTV 236
C KTGTLT N++TV
Sbjct: 343 CSXKTGTLTQNRMTV 357
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 31/270 (11%)
Query: 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLR-DGKWKEE-DAAILVPGDVISVKLGDIVP 58
N+ V QE NA A AL + KV R D K + A +VPGD++ V +GD VP
Sbjct: 102 NAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVP 161
Query: 59 ADARLL--EGDPLTIDQSALTGESLT-------------ISKGPGDCVYSGSTCKRGEIQ 103
AD R+L + L +DQS LTGES++ +++ + ++SG+ G+
Sbjct: 162 ADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAL 221
Query: 104 AVVIATGVHTFLGRAV-HLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQH 162
+V TGV T +G+ + T Q+ L G+ S + LI + + + H
Sbjct: 222 GIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQ--LSKVISLICVAVWLINIGH 279
Query: 163 -----------REYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTA 211
R + + +P LP V++ +A+G+++++ + I + + +
Sbjct: 280 FNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPS 339
Query: 212 IVHMAGMDVLCCDKTGTLTLNKLTVDKNLI 241
+ + V+C DKTGTLT N+++V K I
Sbjct: 340 VETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 31/270 (11%)
Query: 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLR-DGKWKEE-DAAILVPGDVISVKLGDIVP 58
N+ V QE NA A AL + KV R D K + A +VPGD++ V +GD VP
Sbjct: 101 NAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVP 160
Query: 59 ADARLL--EGDPLTIDQSALTGESLT-------------ISKGPGDCVYSGSTCKRGEIQ 103
AD R+L + L +DQS LTGES++ +++ + ++SG+ G+
Sbjct: 161 ADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAL 220
Query: 104 AVVIATGVHTFLGRAV-HLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQH 162
+V TGV T +G+ + T Q+ L G+ S + LI + + + H
Sbjct: 221 GIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQ--LSKVISLICVAVWLINIGH 278
Query: 163 -----------REYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTA 211
R + + +P LP V++ +A+G+++++ + I + + +
Sbjct: 279 FNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPS 338
Query: 212 IVHMAGMDVLCCDKTGTLTLNKLTVDKNLI 241
+ + V+C DKTGTLT N+++V K I
Sbjct: 339 VETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 31/270 (11%)
Query: 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLR-DGKWKEE-DAAILVPGDVISVKLGDIVP 58
N+ V QE NA A AL + KV R D K + A +VPGD++ V +GD VP
Sbjct: 101 NAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVP 160
Query: 59 ADARLL--EGDPLTIDQSALTGESLT-------------ISKGPGDCVYSGSTCKRGEIQ 103
AD R+L + L +DQS LTGES++ +++ + ++SG+ G+
Sbjct: 161 ADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAI 220
Query: 104 AVVIATGVHTFLGRAV-HLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQH 162
+V TGV T +G+ + T Q+ L G+ S + LI + + + H
Sbjct: 221 GIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQ--LSKVISLICVAVWLINIGH 278
Query: 163 -----------REYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTA 211
R + + +P LP V++ +A+G+++++ + I + + +
Sbjct: 279 FNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPS 338
Query: 212 IVHMAGMDVLCCDKTGTLTLNKLTVDKNLI 241
+ + V+C DKTGTLT N+++V K I
Sbjct: 339 VETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 14/247 (5%)
Query: 3 TVCF--IQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60
T CF QE + + + +A V+RDG+ +A +V GD++ VK GD +PAD
Sbjct: 148 TGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPAD 207
Query: 61 ARLLEGDPLTIDQSALTGESLTISKGPG----------DCVYSGSTCKRGEIQAVVIATG 110
R++ +D S+LTGES ++ P + + + C G + VV+ TG
Sbjct: 208 LRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTG 267
Query: 111 VHTFLGRAVHLVDTTNHVGHFQ-KILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGL 169
T +GR L VG I + I +A+ L + ++ + + +
Sbjct: 268 DRTVMGRIATLASGL-EVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYSWLEAV 326
Query: 170 DNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTL 229
L+ ++ VP L ++V + + +++++ + + K + A+ + +C DKTGTL
Sbjct: 327 IFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTL 386
Query: 230 TLNKLTV 236
T N++TV
Sbjct: 387 TQNRMTV 393
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 126/270 (46%), Gaps = 31/270 (11%)
Query: 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLR-DGKWKEE-DAAILVPGDVISVKLGDIVP 58
N+ V QE NA A AL + KV R D K + A +VPGD++ V +GD VP
Sbjct: 101 NAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVP 160
Query: 59 ADARLL--EGDPLTIDQSALTGESLT-------------ISKGPGDCVYSGSTCKRGEIQ 103
AD R+L + L +DQS LTGES++ +++ + ++SG+ G+
Sbjct: 161 ADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAL 220
Query: 104 AVVIATGVHTFLGRAV-HLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQH 162
+V TGV T +G+ + T Q+ L G+ S + LI + + + H
Sbjct: 221 GIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQ--LSKVISLICVAVWLINIGH 278
Query: 163 -----------REYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTA 211
R + + +P LP V++ +A+G+++++ + I + + +
Sbjct: 279 FNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPS 338
Query: 212 IVHMAGMDVLCCDKTGTLTLNKLTVDKNLI 241
+ + V+C KTGTLT N+++V K I
Sbjct: 339 VETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 10/230 (4%)
Query: 9 ENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDP 68
++ G A L+ A A V+RDGK + GD++ V+ G+ +P D ++EG+
Sbjct: 195 KSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES 254
Query: 69 LTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLV-DTTNH 127
+D+S ++GE + + K GD V+ + G ++ G T L + V LV D
Sbjct: 255 Y-VDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGS 313
Query: 128 VGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVP----IA 183
Q++ V Y I ++ L I I Y + H L+ L+ P +A
Sbjct: 314 KPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLA 373
Query: 184 LPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNK 233
PT L+V M G++ G++ K A+ + + DKTGTLT K
Sbjct: 374 TPTALTVGMGKGAEL----GILIKNADALEVAEKVTAVIFDKTGTLTKGK 419
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 10/230 (4%)
Query: 9 ENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDP 68
++ G A L+ A A V+RDGK + GD++ V+ G+ +P D ++EG+
Sbjct: 117 KSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES 176
Query: 69 LTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLV-DTTNH 127
+D+S ++GE + + K GD V+ + G ++ G T L + V LV D
Sbjct: 177 Y-VDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGS 235
Query: 128 VGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVP----IA 183
Q++ V Y I ++ L I I Y + H L+ L+ P +A
Sbjct: 236 KPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLA 295
Query: 184 LPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNK 233
PT L+V M G++ G++ K A+ + + DKTGTLT K
Sbjct: 296 TPTALTVGMGKGAEL----GILIKNADALEVAEKVTAVIFDKTGTLTKGK 341
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 10/228 (4%)
Query: 9 ENNAGAASTALMAHLAPKA--KVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEG 66
G+A AL+ L P++ ++ DG +E + GD++ V+ G+ +P D + EG
Sbjct: 209 REQTGSAIRALLK-LVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEG 267
Query: 67 DPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLV-DTT 125
+D+S +TGE + ++K V + + G + G T L R V +V D
Sbjct: 268 RSF-VDESMVTGEPIPVAKEASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQ 326
Query: 126 NHVGHFQKILTAVGKYCICSIALGLILEIIVMYAV-QHREYRTGLDNLLVPLIGGVPIAL 184
Q++ V + + ++ L +L IV + GL + LI P AL
Sbjct: 327 RSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCAL 386
Query: 185 --PTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLT 230
T +S+++ +G S GV+ K A+ M ++ L DKTGTLT
Sbjct: 387 GLATPMSIMVGVGKGAQS--GVLIKNAEALERMEKVNTLVVDKTGTLT 432
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 39 DAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCK 98
D ++ GD+I V G P D R++EG + +D+S +TGE++ ++K PG V +GS +
Sbjct: 38 DVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKPGSTVIAGSINQ 96
Query: 99 RGEIQAVVIATGVHTFLGRAVHLVD 123
G + G T L + V LV+
Sbjct: 97 NGSLLICATHVGADTTLSQIVKLVE 121
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 15 ASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQS 74
A L+ A A V+RDGK + GD++ V+ G+ +P D ++EG+ +D+S
Sbjct: 2 AIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDES 60
Query: 75 ALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVD 123
++GE + + K GD V+ + G ++ G T L + V LV+
Sbjct: 61 MISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 109
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 258 ARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGTNM--YP 315
A+ ++ + ++I A G L + K ++ L+ +L + + G + N+ YP
Sbjct: 64 AQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYP 123
Query: 316 SSALLGQDRD 325
S AL+G+D D
Sbjct: 124 SWALIGKDGD 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,620,222
Number of Sequences: 62578
Number of extensions: 388377
Number of successful extensions: 1157
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 29
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)