Query 041932
Match_columns 348
No_of_seqs 273 out of 2112
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 12:13:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2217 ZntA Cation transport 100.0 5.1E-66 1.1E-70 522.6 27.9 300 5-312 188-492 (713)
2 KOG0205 Plasma membrane H+-tra 100.0 1.4E-66 3E-71 500.4 18.7 348 1-348 110-570 (942)
3 TIGR01647 ATPase-IIIA_H plasma 100.0 3.4E-62 7.4E-67 506.8 32.3 346 1-348 68-520 (755)
4 PRK11033 zntA zinc/cadmium/mer 100.0 4.3E-60 9.4E-65 489.8 30.6 306 2-313 220-527 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 7E-60 1.5E-64 475.9 29.8 296 5-314 68-369 (562)
6 KOG0207 Cation transport ATPas 100.0 1.9E-60 4.1E-65 475.5 17.6 321 5-340 355-694 (951)
7 PRK10671 copA copper exporting 100.0 4.4E-58 9.6E-63 482.4 29.7 300 5-312 300-605 (834)
8 TIGR01512 ATPase-IB2_Cd heavy 100.0 1.6E-57 3.4E-62 457.0 29.9 294 2-312 32-326 (536)
9 TIGR01525 ATPase-IB_hvy heavy 100.0 4.8E-57 1E-61 455.8 29.6 303 2-313 32-340 (556)
10 PRK10517 magnesium-transportin 100.0 1.2E-56 2.5E-61 471.4 30.9 273 1-277 135-429 (902)
11 TIGR01524 ATPase-IIIB_Mg magne 100.0 2.7E-56 5.8E-61 468.4 29.9 273 1-277 101-394 (867)
12 PRK15122 magnesium-transportin 100.0 3.5E-55 7.6E-60 460.8 30.3 273 1-277 124-427 (903)
13 COG0474 MgtA Cation transport 100.0 4.4E-55 9.5E-60 460.6 28.4 278 1-279 116-426 (917)
14 TIGR01522 ATPase-IIA2_Ca golgi 100.0 7E-55 1.5E-59 459.7 29.1 239 1-240 93-346 (884)
15 PRK01122 potassium-transportin 100.0 4.5E-52 9.8E-57 420.9 30.8 269 3-279 81-355 (679)
16 TIGR01497 kdpB K+-transporting 100.0 8.1E-52 1.7E-56 418.3 31.9 301 3-312 82-396 (675)
17 TIGR01517 ATPase-IIB_Ca plasma 100.0 5.5E-52 1.2E-56 440.2 29.9 241 1-241 141-399 (941)
18 PRK14010 potassium-transportin 100.0 2.8E-51 6.1E-56 414.8 29.4 270 2-280 76-356 (673)
19 KOG0202 Ca2+ transporting ATPa 100.0 2.3E-51 5E-56 406.2 19.8 241 1-241 91-355 (972)
20 TIGR01494 ATPase_P-type ATPase 100.0 8.3E-50 1.8E-54 398.9 29.4 288 2-312 10-305 (499)
21 TIGR01116 ATPase-IIA1_Ca sarco 100.0 2.7E-49 5.8E-54 418.4 31.2 240 1-240 49-311 (917)
22 TIGR01106 ATPase-IIC_X-K sodiu 100.0 4.3E-49 9.4E-54 419.5 29.6 277 1-278 117-435 (997)
23 TIGR01523 ATPase-IID_K-Na pota 100.0 2.3E-48 5E-53 413.7 25.7 238 1-241 94-382 (1053)
24 TIGR01657 P-ATPase-V P-type AT 100.0 2.8E-45 6.1E-50 392.5 27.5 237 1-240 206-470 (1054)
25 KOG0204 Calcium transporting A 100.0 1.2E-42 2.5E-47 344.3 24.7 233 9-241 203-458 (1034)
26 PF00122 E1-E2_ATPase: E1-E2 A 100.0 9.4E-40 2E-44 294.9 21.0 211 2-214 10-230 (230)
27 TIGR01652 ATPase-Plipid phosph 100.0 1.5E-36 3.3E-41 326.0 24.6 234 2-241 65-382 (1057)
28 KOG0208 Cation transport ATPas 100.0 1.7E-36 3.7E-41 304.3 22.9 235 2-240 228-490 (1140)
29 KOG0203 Na+/K+ ATPase, alpha s 100.0 6.6E-37 1.4E-41 303.2 14.7 239 3-242 141-390 (1019)
30 PLN03190 aminophospholipid tra 100.0 3.4E-32 7.5E-37 291.4 23.9 234 2-241 151-476 (1178)
31 COG2216 KdpB High-affinity K+ 100.0 7.6E-32 1.6E-36 255.4 17.0 264 9-281 87-358 (681)
32 KOG0209 P-type ATPase [Inorgan 100.0 4.1E-30 8.9E-35 254.0 15.6 263 8-278 237-551 (1160)
33 KOG0210 P-type ATPase [Inorgan 99.9 4.6E-24 9.9E-29 208.1 17.7 228 25-261 163-451 (1051)
34 KOG0206 P-type ATPase [General 99.9 5.2E-21 1.1E-25 200.7 14.3 239 3-247 96-416 (1151)
35 PF00702 Hydrolase: haloacid d 98.3 5.9E-07 1.3E-11 79.3 5.3 52 218-279 1-52 (215)
36 KOG4383 Uncharacterized conser 85.2 2.4 5.1E-05 43.7 6.6 38 29-66 160-197 (1354)
37 TIGR01494 ATPase_P-type ATPase 70.6 57 0.0012 32.8 11.6 147 32-197 54-213 (499)
38 PF01455 HupF_HypC: HupF/HypC 65.1 18 0.00038 25.9 4.8 33 24-56 16-51 (68)
39 PF12710 HAD: haloacid dehalog 62.2 4 8.7E-05 34.7 1.3 13 221-233 1-13 (192)
40 PF03120 DNA_ligase_OB: NAD-de 60.8 4.7 0.0001 30.1 1.2 20 40-59 47-67 (82)
41 COG0272 Lig NAD-dependent DNA 58.0 18 0.00039 37.5 5.1 28 40-67 365-394 (667)
42 TIGR01523 ATPase-IID_K-Na pota 56.9 2.7 5.9E-05 46.4 -0.9 59 290-348 666-731 (1053)
43 TIGR01647 ATPase-IIIA_H plasma 55.5 28 0.0006 37.1 6.4 34 46-79 100-134 (755)
44 PRK11507 ribosome-associated p 53.5 19 0.00041 26.0 3.3 27 27-53 37-63 (70)
45 COG1188 Ribosome-associated he 50.8 21 0.00045 27.7 3.3 38 25-64 32-69 (100)
46 smart00306 HintN Hint (Hedgeho 49.5 18 0.00039 27.0 2.9 25 28-52 75-99 (100)
47 PF13275 S4_2: S4 domain; PDB: 48.3 10 0.00023 26.9 1.2 27 29-56 35-61 (65)
48 PRK11033 zntA zinc/cadmium/mer 47.3 1.2E+02 0.0027 32.2 9.7 158 30-198 261-420 (741)
49 PF15584 Imm44: Immunity prote 47.0 8.8 0.00019 29.1 0.7 20 45-64 13-32 (94)
50 TIGR01517 ATPase-IIB_Ca plasma 44.5 1.9E+02 0.0041 31.8 10.8 158 32-197 186-359 (941)
51 PRK04980 hypothetical protein; 42.5 93 0.002 24.2 5.8 58 24-86 18-82 (102)
52 cd00210 PTS_IIA_glc PTS_IIA, P 39.3 38 0.00082 27.4 3.4 55 45-99 25-100 (124)
53 TIGR00074 hypC_hupF hydrogenas 38.2 73 0.0016 23.4 4.4 30 26-55 16-48 (76)
54 PF07591 PT-HINT: Pretoxin HIN 37.8 30 0.00066 28.0 2.7 29 35-63 69-97 (130)
55 PF00122 E1-E2_ATPase: E1-E2 A 35.5 1.3E+02 0.0029 26.3 6.7 53 5-66 10-62 (230)
56 PRK08433 flagellar motor switc 33.1 35 0.00076 27.0 2.2 25 37-61 39-63 (111)
57 TIGR00830 PTBA PTS system, glu 32.3 1E+02 0.0022 24.7 4.8 54 46-99 26-100 (121)
58 COG1778 Low specificity phosph 32.1 33 0.00071 29.0 2.0 27 212-238 2-28 (170)
59 PRK10413 hydrogenase 2 accesso 31.9 80 0.0017 23.5 3.8 30 26-55 19-55 (82)
60 PF09926 DUF2158: Uncharacteri 31.7 33 0.00071 23.3 1.6 12 44-55 2-13 (53)
61 PRK10671 copA copper exporting 31.5 4.2E+02 0.009 28.7 10.8 157 31-198 342-501 (834)
62 TIGR01106 ATPase-IIC_X-K sodiu 31.1 3.5E+02 0.0076 30.0 10.2 186 5-194 124-324 (997)
63 cd00081 Hint Hedgehog/Intein d 29.4 61 0.0013 25.7 3.2 26 27-52 74-99 (136)
64 PF03453 MoeA_N: MoeA N-termin 28.2 98 0.0021 26.0 4.3 60 40-103 81-143 (162)
65 PRK14715 DNA polymerase II lar 28.1 42 0.00092 37.6 2.5 30 26-55 989-1018(1627)
66 TIGR01512 ATPase-IB2_Cd heavy 28.1 4.8E+02 0.01 26.5 10.1 154 31-197 74-229 (536)
67 PF03739 YjgP_YjgQ: Predicted 27.6 2.4E+02 0.0051 26.6 7.4 25 179-203 55-79 (354)
68 TIGR02726 phenyl_P_delta pheny 27.2 37 0.00081 28.9 1.6 26 213-238 2-27 (169)
69 PF07385 DUF1498: Protein of u 25.9 1.2E+02 0.0027 27.0 4.6 28 25-57 137-164 (225)
70 COG4942 Membrane-bound metallo 25.9 75 0.0016 31.2 3.5 56 42-98 319-388 (420)
71 PRK10409 hydrogenase assembly 25.5 1.1E+02 0.0024 23.2 3.7 30 26-55 16-54 (90)
72 PRK15175 Vi polysaccharide exp 25.3 1.1E+02 0.0025 29.4 4.7 29 25-53 198-236 (355)
73 TIGR01525 ATPase-IB_hvy heavy 25.2 7E+02 0.015 25.4 10.7 153 32-197 76-229 (556)
74 COG2501 S4-like RNA binding pr 24.8 92 0.002 22.7 2.9 26 27-52 37-62 (73)
75 COG0474 MgtA Cation transport 24.3 5.5E+02 0.012 28.2 10.1 192 3-196 121-330 (917)
76 TIGR01511 ATPase-IB1_Cu copper 24.2 7E+02 0.015 25.5 10.4 150 31-198 111-261 (562)
77 TIGR02219 phage_NlpC_fam putat 23.9 43 0.00092 27.3 1.3 18 36-53 70-87 (134)
78 PRK06033 hypothetical protein; 23.7 31 0.00066 25.7 0.4 23 38-60 15-37 (83)
79 PRK15078 polysaccharide export 23.6 1.3E+02 0.0027 29.3 4.7 39 25-63 211-263 (379)
80 PRK01122 potassium-transportin 23.6 6.1E+02 0.013 26.8 9.9 64 31-99 124-187 (679)
81 TIGR02988 YaaA_near_RecF S4 do 23.4 92 0.002 21.1 2.7 23 29-51 36-58 (59)
82 smart00532 LIGANc Ligase N fam 23.2 50 0.0011 32.8 1.8 25 40-64 360-386 (441)
83 PRK08097 ligB NAD-dependent DN 23.1 50 0.0011 33.9 1.9 20 40-59 357-377 (562)
84 PF12791 RsgI_N: Anti-sigma fa 23.1 1.4E+02 0.0031 19.9 3.6 35 25-59 6-42 (56)
85 PRK15122 magnesium-transportin 22.6 6.8E+02 0.015 27.4 10.4 184 5-196 131-351 (903)
86 PRK06788 flagellar motor switc 22.2 31 0.00066 27.7 0.1 62 37-114 41-104 (119)
87 PRK14898 DNA-directed RNA poly 22.2 85 0.0018 34.1 3.4 33 26-60 170-202 (858)
88 PRK11479 hypothetical protein; 22.0 46 0.00099 30.8 1.2 22 36-57 58-79 (274)
89 PRK09439 PTS system glucose-sp 21.8 2E+02 0.0043 24.6 4.9 55 45-99 47-122 (169)
90 PRK10348 ribosome-associated h 21.8 96 0.0021 25.4 2.9 28 29-57 36-63 (133)
91 PF10162 G8: G8 domain; Inter 21.6 2.2E+02 0.0048 22.7 5.1 67 45-112 11-85 (125)
92 KOG3416 Predicted nucleic acid 21.6 59 0.0013 26.3 1.6 15 41-55 60-74 (134)
93 PRK10838 spr outer membrane li 21.2 61 0.0013 28.2 1.8 20 36-55 122-141 (190)
94 TIGR01657 P-ATPase-V P-type AT 21.2 7.5E+02 0.016 27.6 10.6 55 171-237 397-451 (1054)
95 PRK06437 hypothetical protein; 20.1 1.6E+02 0.0035 20.7 3.5 29 22-51 32-60 (67)
No 1
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-66 Score=522.62 Aligned_cols=300 Identities=27% Similarity=0.403 Sum_probs=272.6
Q ss_pred HHHHHH---hHHHHHHHHHhcCCCceEEEe-CCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 5 CFIQEN---NAGAASTALMAHLAPKAKVLR-DGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 5 ~~~~~~---~~~~~~~~l~~~~~~~~~v~r-~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
+|+|++ |+++++++|.++.|+++++++ ||++++|++++|++||+|.|+|||+||+||+|++|++ .||||+|||||
T Consensus 188 ~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s-~vDeS~iTGEs 266 (713)
T COG2217 188 RYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSS-SVDESMLTGES 266 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcE-EeecchhhCCC
Confidence 456666 888999999999999998877 5558999999999999999999999999999999999 89999999999
Q ss_pred cceecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 81 LTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIVMYA 159 (348)
Q Consensus 81 ~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (348)
.|+.|++||.|++||.|.+|.+.++|+++|.+|++++|.++++++ .+|+++|+++|+++.||++.+++++++++++||+
T Consensus 267 ~PV~k~~Gd~V~aGtiN~~G~l~i~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~ 346 (713)
T COG2217 267 LPVEKKPGDEVFAGTVNLDGSLTIRVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPL 346 (713)
T ss_pred CCEecCCCCEEeeeEEECCccEEEEEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 7889999999999999998666666655554434
Q ss_pred HhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEEe
Q 041932 160 VQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKN 239 (348)
Q Consensus 160 ~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~ 239 (348)
..+.+|..++.+++++|+++|||||.+++|+++..++.+++|+|+|+|+..++|+++++|+++||||||||+|+|+|+++
T Consensus 347 ~~~~~~~~a~~~a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v 426 (713)
T COG2217 347 FGGGDWETALYRALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDV 426 (713)
T ss_pred hcCCcHHHHHHHHHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEE
Confidence 43468889999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred eeeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCcccccccccccCCCchhhhhhccceeccccc
Q 041932 240 LIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGTN 312 (348)
Q Consensus 240 ~~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~~~~~d~~~i~G~g~~~a~~~~~~~~ig~~ 312 (348)
. ..+ + +++++|++|+++|+.|+ ||+++||++++++.+ .....+++.++|.|+ .|.++|+++.+|+.
T Consensus 427 ~--~~~-~-~e~~~L~laAalE~~S~-HPiA~AIv~~a~~~~-~~~~~~~~~i~G~Gv-~~~v~g~~v~vG~~ 492 (713)
T COG2217 427 V--ALD-G-DEDELLALAAALEQHSE-HPLAKAIVKAAAERG-LPDVEDFEEIPGRGV-EAEVDGERVLVGNA 492 (713)
T ss_pred e--cCC-C-CHHHHHHHHHHHHhcCC-ChHHHHHHHHHHhcC-CCCccceeeeccCcE-EEEECCEEEEEcCH
Confidence 5 444 4 88999999999999986 799999999887665 233446899999999 89999999999999
No 2
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-66 Score=500.43 Aligned_cols=348 Identities=76% Similarity=1.174 Sum_probs=324.4
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
|++++|+||+++.++..+|++.+.++++|+|||+|.++.+++|+||||+.++.|++||||+++++|+-|.||+|.|||||
T Consensus 110 Nsti~FveE~nAGn~aa~L~a~LA~KakVlRDGkw~E~eAs~lVPGDIlsik~GdIiPaDaRLl~gD~LkiDQSAlTGES 189 (942)
T KOG0205|consen 110 NSTISFIEENNAGNAAAALMAGLAPKAKVLRDGKWSEQEASILVPGDILSIKLGDIIPADARLLEGDPLKIDQSALTGES 189 (942)
T ss_pred cceeeeeeccccchHHHHHHhccCcccEEeecCeeeeeeccccccCceeeeccCCEecCccceecCCccccchhhhcCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 81 LTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAV 160 (348)
Q Consensus 81 ~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (348)
.|+.|++||.+|+||++++|++.++|++||.+|+.|+...++...++..+||+.++.+..++++.+++.+++.+...|+.
T Consensus 190 LpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVdst~~~GHFqkVLt~IGn~ci~si~~g~lie~~vmy~~ 269 (942)
T KOG0205|consen 190 LPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTGIGNFCICSIALGMLIEITVMYPI 269 (942)
T ss_pred cccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcCCCCcccHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999888999999999999999988888888777777777
Q ss_pred hhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEEee
Q 041932 161 QHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNL 240 (348)
Q Consensus 161 ~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~~ 240 (348)
+...+.....+.+.+++..+|.++|..+++.++.|+.+++++|.+.|+..++|.|+.+|++|+|||||||.|++++.+-.
T Consensus 270 q~R~~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rLaqqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl 349 (942)
T KOG0205|consen 270 QHRLYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNL 349 (942)
T ss_pred hhhhhhhhhhheheeeecccccccceeeeehhhHHHHHHHhcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCc
Confidence 76666666666667777779999999999999999999999999999999999999999999999999999999999844
Q ss_pred eeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCcc------ccc----------------------------
Q 041932 241 IEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKV------FHL---------------------------- 286 (348)
Q Consensus 241 ~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~------~~~---------------------------- 286 (348)
++.+.+|.++|+++..|+.+++.++.|.||+|++..+++|.+. ++|
T Consensus 350 ~ev~v~gv~~D~~~L~A~rAsr~en~DAID~A~v~~L~dPKeara~ikevhF~PFnPV~Krta~ty~d~dG~~~r~sKGA 429 (942)
T KOG0205|consen 350 IEVFVKGVDKDDVLLTAARASRKENQDAIDAAIVGMLADPKEARAGIKEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGA 429 (942)
T ss_pred ceeeecCCChHHHHHHHHHHhhhcChhhHHHHHHHhhcCHHHHhhCceEEeeccCCccccceEEEEECCCCCEEEecCCC
Confidence 4467779999999999999999999999999999999887543 222
Q ss_pred ------------------------------------------------------------ccc-----------------
Q 041932 287 ------------------------------------------------------------FDF----------------- 289 (348)
Q Consensus 287 ------------------------------------------------------------~d~----------------- 289 (348)
+||
T Consensus 430 Peqil~l~~~~~~i~~~vh~~id~~AeRGlRSLgVArq~v~e~~~~~~g~pw~~~gllp~fdpprhdsa~tirral~lGv 509 (942)
T KOG0205|consen 430 PEQILKLCNEDHDIPERVHSIIDKFAERGLRSLAVARQEVPEKTKESPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGV 509 (942)
T ss_pred hHHHHHHhhccCcchHHHHHHHHHHHHhcchhhhhhhhccccccccCCCCCcccccccccCCCCccchHHHHHHHHhccc
Confidence 222
Q ss_pred --cccCCCchhhhhhccceecccccccCcccccCCCCCCcccCCcHHHHHHhcCccccccC
Q 041932 290 --SSLSGDQLAIAKETGRRLGMGTNMYPSSALLGQDRDDSIVALPVDELIEKADGFAGVFP 348 (348)
Q Consensus 290 --~~i~G~g~~~a~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~p 348 (348)
+|+|||.+++|+..||++++|+++|++..+.|.+....+.+.++.++++++|+||+|||
T Consensus 510 ~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfp 570 (942)
T KOG0205|consen 510 NVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFP 570 (942)
T ss_pred eeeeecchHHHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCH
Confidence 99999999999999999999999999999999988889999999999999999999998
No 3
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=3.4e-62 Score=506.83 Aligned_cols=346 Identities=53% Similarity=0.841 Sum_probs=298.7
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
|+.++|+||+++++++++|+++.+++++|+|||++++|++++|+|||+|.+++||+|||||+|++|+.+.||||+|||||
T Consensus 68 ~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~g~~~~VDeS~LTGES 147 (755)
T TIGR01647 68 NATIGFIEENKAGNAVEALKQSLAPKARVLRDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGES 147 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCEEEEEEhhhCcCCCEEEECCCCEEeceEEEEecCceEEEcccccCCc
Confidence 56889999999999999999999999999999999999999999999999999999999999999985699999999999
Q ss_pred cceecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhcccccC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 81 LTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTN-HVGHFQKILTAVGKYCICSIALGLILEIIVMYA 159 (348)
Q Consensus 81 ~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (348)
.|+.|.+||.+|+||.+.+|+++++|++||.+|.+|++.++++++. +++++|+.+++++.++++.+++++++.++++++
T Consensus 148 ~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~ 227 (755)
T TIGR01647 148 LPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIGLFLIVLIGVLVLIELVVLFF 227 (755)
T ss_pred cceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998874 678999999999998776554444443333333
Q ss_pred HhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEEe
Q 041932 160 VQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKN 239 (348)
Q Consensus 160 ~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~ 239 (348)
..+.+|..++..++++++++|||+||++++++++.++++|+|+|+++|+.+++|+|+.+|++|||||||||+|+|+|.++
T Consensus 228 ~~~~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilvk~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~ 307 (755)
T TIGR01647 228 GRGESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLTAIEELAGMDILCSDKTGTLTLNKLSIDEI 307 (755)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEEcccHHHHhccCCcEEEecCCCccccCceEEEEE
Confidence 25667888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred eeeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCC------cc----------------cc---------c--
Q 041932 240 LIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPK------KV----------------FH---------L-- 286 (348)
Q Consensus 240 ~~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~------~~----------------~~---------~-- 286 (348)
+ ....++++++++.+++++++..+.||+++||++++.+.+ .. .+ +
T Consensus 308 ~--~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~~~~~~~~~~~~pf~~~~k~~~~~v~~~~~g~~~~~~k 385 (755)
T TIGR01647 308 L--PFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEARDGYKVLEFVPFDPVDKRTEATVEDPETGKRFKVTK 385 (755)
T ss_pred E--ecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHHHHhcCceEEEeccCCCCCeEEEEEEeCCCceEEEEEe
Confidence 6 333247788999999887644446899999988643211 00 00 0
Q ss_pred -------------------------------------------------------------------------ccccccC
Q 041932 287 -------------------------------------------------------------------------FDFSSLS 293 (348)
Q Consensus 287 -------------------------------------------------------------------------~d~~~i~ 293 (348)
....|+|
T Consensus 386 Ga~e~il~~c~~~~~~~~~~~~~~~~~~~~G~rvl~vA~~~~e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miT 465 (755)
T TIGR01647 386 GAPQVILDLCDNKKEIEEKVEEKVDELASRGYRALGVARTDEEGRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVT 465 (755)
T ss_pred CChHHHHHhcCCcHHHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEEC
Confidence 0117899
Q ss_pred CCchhhhhhccceecccccccCcccccCCCCCCcccCCcHHHHHHhcCccccccC
Q 041932 294 GDQLAIAKETGRRLGMGTNMYPSSALLGQDRDDSIVALPVDELIEKADGFAGVFP 348 (348)
Q Consensus 294 G~g~~~a~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~p 348 (348)
||+..+|+..++++++..++++++++.+.+....+.+.++.+.++++++||++.|
T Consensus 466 GD~~~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~P 520 (755)
T TIGR01647 466 GDHLAIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGFAEVFP 520 (755)
T ss_pred CCCHHHHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecCH
Confidence 9999899999999999888888888876655445566789999999999999998
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=4.3e-60 Score=489.84 Aligned_cols=306 Identities=25% Similarity=0.288 Sum_probs=276.9
Q ss_pred hhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCc
Q 041932 2 STVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESL 81 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~ 81 (348)
.+++.++++|+++++++|+++.|++++++|||++++|++++|+|||+|+|++||+||+||+|++|++ .||||+|||||.
T Consensus 220 ~~le~~~~~ra~~~~~~L~~l~p~~a~vir~g~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~-~vdes~lTGEs~ 298 (741)
T PRK11033 220 ERLEGYAASRARRGVSALMALVPETATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFA-SFDESALTGESI 298 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEecceEEEECcE-EeecccccCCCC
Confidence 3567778889999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred ceecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 82 TISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIVMYAV 160 (348)
Q Consensus 82 pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (348)
|+.|++||.||+||.+.+|.++++|+++|.+|.+++|.++++++ .+++++|+++|+++.|+++.++++.++.+++++++
T Consensus 299 Pv~k~~Gd~V~aGt~~~~G~~~i~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~ 378 (741)
T PRK11033 299 PVERATGEKVPAGATSVDRLVTLEVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLL 378 (741)
T ss_pred CEecCCCCeeccCCEEcCceEEEEEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 56899999999999998887666666555554455
Q ss_pred hhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEEee
Q 041932 161 QHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNL 240 (348)
Q Consensus 161 ~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~~ 240 (348)
...+|..++.+++++++++|||+|.+++|+++..+..+++|+|+++|+..++|+++++|++|||||||||+|+|+|+++.
T Consensus 379 ~~~~~~~~i~~a~svlviacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~ 458 (741)
T PRK11033 379 FAAPWQEWIYRGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIH 458 (741)
T ss_pred ccCCHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEE
Confidence 56678888999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred eeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCcc-cccccccccCCCchhhhhhccceecccccc
Q 041932 241 IEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKV-FHLFDFSSLSGDQLAIAKETGRRLGMGTNM 313 (348)
Q Consensus 241 ~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~-~~~~d~~~i~G~g~~~a~~~~~~~~ig~~~ 313 (348)
.++ ++++++++.+++++|+.++ ||+++||++++.+.+.. +...+++.++|.|+ .+.++|+++.+|+..
T Consensus 459 --~~~-~~~~~~~l~~aa~~e~~s~-hPia~Ai~~~a~~~~~~~~~~~~~~~~~g~Gv-~~~~~g~~~~ig~~~ 527 (741)
T PRK11033 459 --PAT-GISESELLALAAAVEQGST-HPLAQAIVREAQVRGLAIPEAESQRALAGSGI-EGQVNGERVLICAPG 527 (741)
T ss_pred --ecC-CCCHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhcCCCCCCCcceEEEeeEEE-EEEECCEEEEEecch
Confidence 444 6789999999999998875 79999999998765544 34567889999998 788899999999873
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=7e-60 Score=475.86 Aligned_cols=296 Identities=26% Similarity=0.384 Sum_probs=263.1
Q ss_pred HHHHHH---hHHHHHHHHHhcCCCceEEEeC-CeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 5 CFIQEN---NAGAASTALMAHLAPKAKVLRD-GKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 5 ~~~~~~---~~~~~~~~l~~~~~~~~~v~r~-g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
+|+|++ |+++++++|.+..|.+++++|+ |++++|++++|++||+|+|++||+|||||+|++|++ .||||+|||||
T Consensus 68 ~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~-~vdes~lTGEs 146 (562)
T TIGR01511 68 RWLEMLAKGRASDALSKLAKLQPSTATLLTKDGSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGES-EVDESLVTGES 146 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEecCceEEEECce-EEehHhhcCCC
Confidence 355554 8889999999999999999985 667999999999999999999999999999999998 89999999999
Q ss_pred cceecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 81 LTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIVMYA 159 (348)
Q Consensus 81 ~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (348)
.|+.|++||.||+||.+.+|++.++|+++|.+|+++++.++++++ .+++++++++++++.++++.+++++++. ++.|.
T Consensus 147 ~pv~k~~gd~V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~-~~~~~ 225 (562)
T TIGR01511 147 LPVPKKVGDPVIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALIT-FVIWL 225 (562)
T ss_pred CcEEcCCCCEEEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999999887 6789999999999999877655444433 22232
Q ss_pred HhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEEe
Q 041932 160 VQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKN 239 (348)
Q Consensus 160 ~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~ 239 (348)
.++.+++++++++|||+|++++|+++..+..+++|+|+++|+++++|+|+++|++|||||||||+|+|++.++
T Consensus 226 -------~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~v~~i 298 (562)
T TIGR01511 226 -------FALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPTVTDV 298 (562)
T ss_pred -------HHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEEEEEE
Confidence 3677899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred eeeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCcc-cccccccccCCCchhhhhhccceeccccccc
Q 041932 240 LIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKV-FHLFDFSSLSGDQLAIAKETGRRLGMGTNMY 314 (348)
Q Consensus 240 ~~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~-~~~~d~~~i~G~g~~~a~~~~~~~~ig~~~~ 314 (348)
. .+. +.++++++.+|+++|+.++ ||+++||++++++.+.. .++.+++.++|.|+ .+..+|+++.+|+..+
T Consensus 299 ~--~~~-~~~~~~~l~~aa~~e~~s~-HPia~Ai~~~~~~~~~~~~~~~~~~~~~g~Gi-~~~~~g~~~~iG~~~~ 369 (562)
T TIGR01511 299 H--VFG-DRDRTELLALAAALEAGSE-HPLAKAIVSYAKEKGITLVEVSDFKAIPGIGV-EGTVEGTKIQLGNEKL 369 (562)
T ss_pred e--cCC-CCCHHHHHHHHHHHhccCC-ChHHHHHHHHHHhcCCCcCCCCCeEEECCceE-EEEECCEEEEEECHHH
Confidence 5 444 5778899999999999886 79999999998755433 24567889999999 8999999999999843
No 6
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-60 Score=475.53 Aligned_cols=321 Identities=21% Similarity=0.291 Sum_probs=281.7
Q ss_pred HHHHHH---hHHHHHHHHHhcCCCceEEEeCCe-EEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 5 CFIQEN---NAGAASTALMAHLAPKAKVLRDGK-WKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 5 ~~~~~~---~~~~~~~~l~~~~~~~~~v~r~g~-~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
+|+|++ ++..++..|+++.|.++.++.+|+ +++|+.+.+++||+|.|+||++||+||+|++|++ +||||++|||+
T Consensus 355 r~LE~~Ak~kts~alskLmsl~p~~a~ii~~g~~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss-~VDEs~iTGEs 433 (951)
T KOG0207|consen 355 RWLESLAKGKTSEALSKLMSLAPSKATIIEDGSEEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSS-EVDESLITGES 433 (951)
T ss_pred HHHHHHhhccchHHHHHHhhcCcccceEeecCCcceEeeeeeeccCCEEEECCCCccccccEEEeCce-eechhhccCCc
Confidence 455555 777899999999999999999996 8999999999999999999999999999999999 99999999999
Q ss_pred cceecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 81 LTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIVMYA 159 (348)
Q Consensus 81 ~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (348)
+|+.|++|+.|.+||.|.+|.+.++++++|+||.++||.++++++ ..++|+|+++|+++.||++.+++..++++++|.+
T Consensus 434 ~PV~Kk~gs~ViaGsiN~nG~l~VkaT~~g~dttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~ 513 (951)
T KOG0207|consen 434 MPVPKKKGSTVIAGSINLNGTLLVKATKVGGDTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWIL 513 (951)
T ss_pred eecccCCCCeeeeeeecCCceEEEEEEeccccchHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 7889999999999999998777666655444433
Q ss_pred Hhh----------chHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCcc
Q 041932 160 VQH----------REYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTL 229 (348)
Q Consensus 160 ~~~----------~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTL 229 (348)
... ..+..++..++++++++|||+|.+++|++++.+....+++|+|+|+.+.||.+.++++++|||||||
T Consensus 514 ~g~~~~~~~~~~~~~~~~a~~~aisVlviACPCaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGTL 593 (951)
T KOG0207|consen 514 IGKIVFKYPRSFFDAFSHAFQLAISVLVIACPCALGLATPTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGTL 593 (951)
T ss_pred HccccccCcchhhHHHHHHHHhhheEEEEECchhhhcCCceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCce
Confidence 322 4566778889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEEeeeeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCcc---cccccccccCCCchh-hhhhccc
Q 041932 230 TLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKV---FHLFDFSSLSGDQLA-IAKETGR 305 (348)
Q Consensus 230 T~~~~~v~~~~~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~---~~~~d~~~i~G~g~~-~a~~~~~ 305 (348)
|+|++.|.++. .+....+..++|.++++.|..++ ||+++||++|+++.... ....+++..+|+|+. .++.+|+
T Consensus 594 T~G~~~V~~~~--~~~~~~~~~e~l~~v~a~Es~Se-HPig~AIv~yak~~~~~~~~~~~~~~~~~pg~g~~~~~~~~~~ 670 (951)
T KOG0207|consen 594 TEGKPTVVDFK--SLSNPISLKEALALVAAMESGSE-HPIGKAIVDYAKEKLVEPNPEGVLSFEYFPGEGIYVTVTVDGN 670 (951)
T ss_pred ecceEEEEEEE--ecCCcccHHHHHHHHHHHhcCCc-CchHHHHHHHHHhcccccCccccceeecccCCCcccceEEeee
Confidence 99999999976 45434789999999999999986 79999999999876632 234578889999931 4667788
Q ss_pred eecccccccCcccccCCCCCCcccCCcHHHHHHhc
Q 041932 306 RLGMGTNMYPSSALLGQDRDDSIVALPVDELIEKA 340 (348)
Q Consensus 306 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (348)
++.+||+ ++|+.++....+.++++
T Consensus 671 ~i~iGN~-----------~~~~r~~~~~~~~i~~~ 694 (951)
T KOG0207|consen 671 EVLIGNK-----------EWMSRNGCSIPDDILDA 694 (951)
T ss_pred EEeechH-----------HHHHhcCCCCchhHHHh
Confidence 8777777 88888888777655554
No 7
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=4.4e-58 Score=482.43 Aligned_cols=300 Identities=24% Similarity=0.323 Sum_probs=265.0
Q ss_pred HHHHHH---hHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCc
Q 041932 5 CFIQEN---NAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESL 81 (348)
Q Consensus 5 ~~~~~~---~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~ 81 (348)
+|+|++ |+.+++++|.++.|++++++|||++++|+.++|++||+|+|++||+||+||+|++|++ .||||+|||||.
T Consensus 300 ~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~~~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~-~vdeS~lTGEs~ 378 (834)
T PRK10671 300 HMLEARARQRSSKALEKLLDLTPPTARVVTDEGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEA-WLDEAMLTGEPI 378 (834)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCcEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceE-EEeehhhcCCCC
Confidence 355555 7888999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred ceecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 82 TISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIVMYAV 160 (348)
Q Consensus 82 pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (348)
|+.|++||.||+||.|.+|.+.++|+++|.+|.++++.++++++ .+++++++++++++.+|++.++++.++.+++ |++
T Consensus 379 pv~k~~gd~V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~-~~~ 457 (834)
T PRK10671 379 PQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAI-WYF 457 (834)
T ss_pred CEecCCCCEEEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999999999999999999887 6789999999999999887665544443333 333
Q ss_pred hhc--hHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEE
Q 041932 161 QHR--EYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDK 238 (348)
Q Consensus 161 ~~~--~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~ 238 (348)
.+. .|..++..++++++++|||||++++|+++..++.+++|+|+++|+++++|+++++|++|||||||||+|+|+|.+
T Consensus 458 ~~~~~~~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fDKTGTLT~g~~~v~~ 537 (834)
T PRK10671 458 FGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTLTEGKPQVVA 537 (834)
T ss_pred hCCchHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEcCCCccccCceEEEE
Confidence 332 255677889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeeeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCcccccccccccCCCchhhhhhccceeccccc
Q 041932 239 NLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGTN 312 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~~~~~d~~~i~G~g~~~a~~~~~~~~ig~~ 312 (348)
+. .+. +.++++++.+++++|+.++ ||+++||++++.+.. ..+..+++.++|.|+ .+..+|+++.+|+.
T Consensus 538 ~~--~~~-~~~~~~~l~~a~~~e~~s~-hp~a~Ai~~~~~~~~-~~~~~~~~~~~g~Gv-~~~~~g~~~~~G~~ 605 (834)
T PRK10671 538 VK--TFN-GVDEAQALRLAAALEQGSS-HPLARAILDKAGDMT-LPQVNGFRTLRGLGV-SGEAEGHALLLGNQ 605 (834)
T ss_pred EE--ccC-CCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHhhCC-CCCcccceEecceEE-EEEECCEEEEEeCH
Confidence 64 443 6788899999999999876 799999999875322 134568889999998 78888999988887
No 8
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=1.6e-57 Score=457.02 Aligned_cols=294 Identities=26% Similarity=0.334 Sum_probs=263.2
Q ss_pred hhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCc
Q 041932 2 STVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESL 81 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~ 81 (348)
.++++++++|+.+.+++|.+..|++++|+|||+++++++++|+|||+|.+++||+|||||++++|++ .||||+|||||.
T Consensus 32 ~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~-~vdes~lTGEs~ 110 (536)
T TIGR01512 32 ETLEEYASGRARRALKALMELAPDTARVLRGGSLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTS-TVDESALTGESV 110 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCEEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcE-EEEecccCCCCC
Confidence 4678899999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred ceecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 82 TISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIVMYAV 160 (348)
Q Consensus 82 pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (348)
|+.|++||.+|+||.+.+|+++++|+++|.+|.+|++.++++++ .+++++++.+++++.++++.++.+.++.++++++.
T Consensus 111 pv~k~~g~~v~aGt~v~~G~~~~~V~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (536)
T TIGR01512 111 PVEKAPGDEVFAGAINLDGVLTIVVTKLPADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLL 190 (536)
T ss_pred cEEeCCCCEEEeeeEECCceEEEEEEEeccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876 57889999999999988776655554444433322
Q ss_pred hhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEEee
Q 041932 161 QHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNL 240 (348)
Q Consensus 161 ~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~~ 240 (348)
. .+..++.+++++++++|||+|++++|+++..+..+++|+|+++|+++++|+++++|++|||||||||+|+|++.++.
T Consensus 191 -~-~~~~~~~~~~svlv~~~P~aL~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~ 268 (536)
T TIGR01512 191 -K-RWPFWVYRALVLLVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVV 268 (536)
T ss_pred -c-ccHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEee
Confidence 2 23347788899999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred eeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCcccccccccccCCCchhhhhhccceeccccc
Q 041932 241 IEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGTN 312 (348)
Q Consensus 241 ~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~~~~~d~~~i~G~g~~~a~~~~~~~~ig~~ 312 (348)
. .+++.+++++++.++ ||+++||++++.+.+ ++.+++.++|.|+ .+..+|.++.+|+.
T Consensus 269 --~-------~~~l~~a~~~e~~~~-hp~~~Ai~~~~~~~~---~~~~~~~~~g~gi-~~~~~g~~~~ig~~ 326 (536)
T TIGR01512 269 --P-------AEVLRLAAAAEQASS-HPLARAIVDYARKRE---NVESVEEVPGEGV-RAVVDGGEVRIGNP 326 (536)
T ss_pred --H-------HHHHHHHHHHhccCC-CcHHHHHHHHHHhcC---CCcceEEecCCeE-EEEECCeEEEEcCH
Confidence 1 378999999888875 799999999987654 3457788999998 78889999999986
No 9
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=4.8e-57 Score=455.83 Aligned_cols=303 Identities=24% Similarity=0.320 Sum_probs=265.9
Q ss_pred hhhHHHHHHhHHHHHHHHHhcCCCceEEEeCC-eEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 2 STVCFIQENNAGAASTALMAHLAPKAKVLRDG-KWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g-~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
.++++++++|+.+.+++|.+..|++++|+||| +++++++++|+|||+|.+++||+|||||+|++|++ .||||+|||||
T Consensus 32 ~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~-~vdes~lTGEs 110 (556)
T TIGR01525 32 ETLEERAKGRASDALSALLALAPSTARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVVISGES-EVDESALTGES 110 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEeccceEEEecce-EEeehhccCCC
Confidence 46788899999999999999999999999996 99999999999999999999999999999999998 89999999999
Q ss_pred cceecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 81 LTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIVMYA 159 (348)
Q Consensus 81 ~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (348)
.|+.|++|+.||+||.+.+|+++++|+++|.+|++|++.++++++ .+++++++.+++++.++++.++++.++.++++ +
T Consensus 111 ~pv~k~~g~~v~aGt~v~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~-~ 189 (556)
T TIGR01525 111 MPVEKKEGDEVFAGTINGDGSLTIRVTKLGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVW-L 189 (556)
T ss_pred CCEecCCcCEEeeceEECCceEEEEEEEecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 999999999999999999999999999999999999999998876 67899999999999988766555444444333 3
Q ss_pred HhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEEe
Q 041932 160 VQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKN 239 (348)
Q Consensus 160 ~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~ 239 (348)
+.... .++.+++++++++|||++++++|+++..+..+++++|+++|+++++|+++++|++|||||||||+|+|+|.++
T Consensus 190 ~~~~~--~~~~~~~~vlv~~~P~al~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~ 267 (556)
T TIGR01525 190 ALGAL--GALYRALAVLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDV 267 (556)
T ss_pred Hhccc--hHHHHHHHHHhhccccchhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEE
Confidence 22222 6788899999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eeeeccCCCC--HHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCcccccc-cccccCCCchhhhhhcc-ceecccccc
Q 041932 240 LIEIFAKGVD--VDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLF-DFSSLSGDQLAIAKETG-RRLGMGTNM 313 (348)
Q Consensus 240 ~~~~~~~~~~--~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~~~~~-d~~~i~G~g~~~a~~~~-~~~~ig~~~ 313 (348)
. ... +.+ +++++.+++++++.++ ||+++||++++.+.+...... +++.++|.|+ .+..+| .++.+|+..
T Consensus 268 ~--~~~-~~~~~~~~~l~~a~~~e~~~~-hp~~~Ai~~~~~~~~~~~~~~~~~~~~~~~gi-~~~~~g~~~~~lg~~~ 340 (556)
T TIGR01525 268 E--PLD-DASISEEELLALAAALEQSSS-HPLARAIVRYAKKRGLELPKQEDVEEVPGKGV-EATVDGQEEVRIGNPR 340 (556)
T ss_pred E--ecC-CCCccHHHHHHHHHHHhccCC-ChHHHHHHHHHHhcCCCcccccCeeEecCCeE-EEEECCeeEEEEecHH
Confidence 5 333 444 7889999999998875 799999999987554332112 6677899998 788888 799999984
No 10
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=1.2e-56 Score=471.40 Aligned_cols=273 Identities=32% Similarity=0.459 Sum_probs=238.6
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEeC------CeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecc
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRD------GKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQS 74 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~------g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes 74 (348)
|++++|+||+|+++++++|+++.+++++|+|| |++++|++++|+|||+|.+++||+|||||+|++|+++.||||
T Consensus 135 ~~~i~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~IPaDg~li~g~~l~VDES 214 (902)
T PRK10517 135 STLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQA 214 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCCeEEEEEHHhCCCCCEEEECCCCEEeeeEEEEEcCceEEEec
Confidence 57899999999999999999999999999999 689999999999999999999999999999999987799999
Q ss_pred cccCcCcceecCCCC-------------eeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHH
Q 041932 75 ALTGESLTISKGPGD-------------CVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGK 140 (348)
Q Consensus 75 ~lTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~ 140 (348)
+|||||.|+.|.+++ .+|+||.+.+|++.++|++||.+|.+|++.++++++ .+++++++.++++++
T Consensus 215 ~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~v~~~~~~~t~lq~~~~~i~~ 294 (902)
T PRK10517 215 SLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVSEQDSEPNAFQQGISRVSW 294 (902)
T ss_pred CcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHHhhccCCCCCcHHHHHHHHHH
Confidence 999999999999874 799999999999999999999999999999999876 678999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccE
Q 041932 141 YCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDV 220 (348)
Q Consensus 141 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~ 220 (348)
+++...++++.+. ++.+++...+|..++..++++++++|||+||++++++++.++.+|+|+|+++|+++++|++|++|+
T Consensus 295 ~l~~~~~~~~~~v-~~i~~~~~~~~~~~l~~alsv~V~~~Pe~LP~~vt~~la~g~~~mak~~ilVk~l~aiE~lg~v~v 373 (902)
T PRK10517 295 LLIRFMLVMAPVV-LLINGYTKGDWWEAALFALSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVKRLDAIQNFGAMDI 373 (902)
T ss_pred HHHHHHHHHHHHh-hhHHHHhcCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCcEEecchhhhhccCCCE
Confidence 8655443333332 223333445788888899999999999999999999999999999999999999999999999999
Q ss_pred EEecccCccccCceEEEEeeeeeccCCCCHHHHHHHHHHHcCCC--CCChHHHHHHhhh
Q 041932 221 LCCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLE--NLDVIDAAVVGML 277 (348)
Q Consensus 221 i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~l~~aa~~~~~~--~~~pia~Ai~~~~ 277 (348)
+|||||||||+|+|+|.++. ... +.+.++++.++++.+... ..||++.|++.++
T Consensus 374 ic~DKTGTLT~n~m~V~~~~--~~~-~~~~~~ll~~a~l~~~~~~~~~~p~d~All~~a 429 (902)
T PRK10517 374 LCTDKTGTLTQDKIVLENHT--DIS-GKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGV 429 (902)
T ss_pred EEecCCCccccceEEEEEEe--cCC-CCCHHHHHHHHHhcCCcCCCCCCHHHHHHHHHH
Confidence 99999999999999999853 222 556778888887755432 2479998887654
No 11
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=2.7e-56 Score=468.38 Aligned_cols=273 Identities=34% Similarity=0.471 Sum_probs=239.6
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEe------CCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecc
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLR------DGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQS 74 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r------~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes 74 (348)
|++++++||+|+++++++|+++.+++++|+| ||++++|++++|+|||+|.+++||+|||||++++|+.+.||||
T Consensus 101 ~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~g~~l~VDES 180 (867)
T TIGR01524 101 SGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVISARDLFINQS 180 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEecCceEEEcc
Confidence 5789999999999999999999999999999 9999999999999999999999999999999999987799999
Q ss_pred cccCcCcceecCCCC-------------eeeeeeeEecceEEEEEEEecchhHHHHHHhcccccCCCChHHHHHHHHHHH
Q 041932 75 ALTGESLTISKGPGD-------------CVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKY 141 (348)
Q Consensus 75 ~lTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 141 (348)
+|||||.|+.|.+|+ .+|+||.+.+|+++++|++||.+|.+|++.+++.+..+++++++.+++++++
T Consensus 181 ~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~t~lq~~~~~i~~~ 260 (867)
T TIGR01524 181 ALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATERRGQTAFDKGVKSVSKL 260 (867)
T ss_pred cccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 999999999999874 6999999999999999999999999999999998766678999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEE
Q 041932 142 CICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVL 221 (348)
Q Consensus 142 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i 221 (348)
+....++++++. ++.+++...+|..++..++++++++|||+||++++++++.++.+|+|+|+++|+++++|+||++|++
T Consensus 261 ~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~al~l~v~~iP~~Lp~~vt~~la~g~~~mak~~ilvk~l~aiE~lg~v~vi 339 (867)
T TIGR01524 261 LIRFMLVMVPVV-LMINGLMKGDWLEAFLFALAVAVGLTPEMLPMIVSSNLAKGAINMSKKKVIVKELSAIQNFGAMDIL 339 (867)
T ss_pred HHHHHHHHHHHh-eehHHHhcCCHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhCCcEEccchhhhhccCccEE
Confidence 665444333332 2233334456778888999999999999999999999999999999999999999999999999999
Q ss_pred EecccCccccCceEEEEeeeeeccCCCCHHHHHHHHHHHcCC--CCCChHHHHHHhhh
Q 041932 222 CCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQL--ENLDVIDAAVVGML 277 (348)
Q Consensus 222 ~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~l~~aa~~~~~--~~~~pia~Ai~~~~ 277 (348)
|||||||||+|+|+|.++. ... +.+.++++.++++.+.. ...||++.|+++++
T Consensus 340 c~DKTGTLT~~~m~v~~~~--~~~-~~~~~~~l~~a~l~~~~~~~~~~p~~~Al~~~~ 394 (867)
T TIGR01524 340 CTDKTGTLTQDKIELEKHI--DSS-GETSERVLKMAWLNSYFQTGWKNVLDHAVLAKL 394 (867)
T ss_pred EecCCCccccCeEEEEEEe--cCC-CCCHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 9999999999999999864 322 56677888888765442 12489999997764
No 12
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=3.5e-55 Score=460.76 Aligned_cols=273 Identities=31% Similarity=0.450 Sum_probs=234.8
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEeCC------eEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecc
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDG------KWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQS 74 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g------~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes 74 (348)
|++++|+||+|+++++++|+++.+++++|+||| ++++|++++|+|||+|.+++||+|||||++++|+.+.||||
T Consensus 124 ~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g~~l~VDES 203 (903)
T PRK15122 124 SGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESRDLFISQA 203 (903)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcCceEEEcc
Confidence 578999999999999999999999999999994 78999999999999999999999999999999987789999
Q ss_pred cccCcCcceecCC-----------------------CCeeeeeeeEecceEEEEEEEecchhHHHHHHhcccccCCCChH
Q 041932 75 ALTGESLTISKGP-----------------------GDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHF 131 (348)
Q Consensus 75 ~lTGEs~pv~k~~-----------------------g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~~~~~~~ 131 (348)
+|||||.|+.|.+ +|.+|+||.+.+|+++++|++||.+|.+|++.+++.+...++++
T Consensus 204 ~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~~~~t~l 283 (903)
T PRK15122 204 VLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVGTRAQTAF 283 (903)
T ss_pred ccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcCCCCCCcH
Confidence 9999999999975 37899999999999999999999999999999999876667899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhH
Q 041932 132 QKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTA 211 (348)
Q Consensus 132 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~ 211 (348)
++.++++++++..+..+++.+ +++..+....+|..++..++++++++|||+||++++++++.++.+|+|+|+++|+.++
T Consensus 284 ~~~l~~i~~~l~~~~~~~~~~-v~~~~~~~~~~~~~~l~~aisl~V~~~Pe~Lp~~vt~~La~g~~~mak~~ilVk~l~a 362 (903)
T PRK15122 284 DRGVNSVSWLLIRFMLVMVPV-VLLINGFTKGDWLEALLFALAVAVGLTPEMLPMIVSSNLAKGAIAMARRKVVVKRLNA 362 (903)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhhhhccCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHcCCeecccch
Confidence 999999887654332222222 2222222345677888889999999999999999999999999999999999999999
Q ss_pred hhhhcCccEEEecccCccccCceEEEEeeeeeccCCCCHHHHHHHHHHHcCC--CCCChHHHHHHhhh
Q 041932 212 IVHMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQL--ENLDVIDAAVVGML 277 (348)
Q Consensus 212 le~l~~vd~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~l~~aa~~~~~--~~~~pia~Ai~~~~ 277 (348)
+|+||++|++|||||||||+|+|+|.+++ ... +.++++++.++++.+.. ...||++.|+++++
T Consensus 363 vE~Lg~v~vIc~DKTGTLT~~~m~V~~~~--~~~-~~~~~~~l~~a~l~s~~~~~~~~p~e~All~~a 427 (903)
T PRK15122 363 IQNFGAMDVLCTDKTGTLTQDRIILEHHL--DVS-GRKDERVLQLAWLNSFHQSGMKNLMDQAVVAFA 427 (903)
T ss_pred hhhhcCCcEEEecCCcccccCeEEEEEEE--cCC-CCChHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999864 333 45667788888764332 12489999998765
No 13
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-55 Score=460.63 Aligned_cols=278 Identities=36% Similarity=0.525 Sum_probs=239.6
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
|++++|+||+|+.+++++|++..+++++|+|||++++|++++|+|||+|.+++||+||||++++++++|.||||+|||||
T Consensus 116 n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~l~VdEs~LTGES 195 (917)
T COG0474 116 NALLGFVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLEVDESALTGES 195 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecCceEEcccccCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCC--------------CCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHH
Q 041932 81 LTISKGP--------------GDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICS 145 (348)
Q Consensus 81 ~pv~k~~--------------g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 145 (348)
.|+.|.+ .|++|+||.+.+|++.++|++||.+|..|++.+++... ...+++++.+++++.+++.+
T Consensus 196 ~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l~~~l~~~~~~l~~~ 275 (917)
T COG0474 196 LPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPLQRKLNKLGKFLLVL 275 (917)
T ss_pred cchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCcHHHHHHHHHHHHHHH
Confidence 9999963 47899999999999999999999999999999999988 78899999999999886655
Q ss_pred HHHHHHHHHHHHHHHh-hchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEec
Q 041932 146 IALGLILEIIVMYAVQ-HREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCD 224 (348)
Q Consensus 146 i~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fD 224 (348)
.+++.++.++.. ++. ...|...+..++++++.++|.+||+.++++++.++.+|+++++++|+++++|+||++|++|+|
T Consensus 276 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~mak~~~ivr~l~avE~LG~v~vICsD 354 (917)
T COG0474 276 ALVLGALVFVVG-LFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRMAKDNAIVRSLNAIETLGSVDVICSD 354 (917)
T ss_pred HHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccchhhccchhhhccCccEEEec
Confidence 444444333333 333 334788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccCceEEEEeeeeeccCCCC------H---HHHHHHHHHHcCC--C------CCChHHHHHHhhhcC
Q 041932 225 KTGTLTLNKLTVDKNLIEIFAKGVD------V---DTVVLMAARASQL--E------NLDVIDAAVVGMLAD 279 (348)
Q Consensus 225 KTGTLT~~~~~v~~~~~~~~~~~~~------~---~~~l~~aa~~~~~--~------~~~pia~Ai~~~~~~ 279 (348)
||||||+|+|+|.+++...-.+..+ . .+++..++.+... . ..||.+.||++++.+
T Consensus 355 KTGTLTqN~M~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~~~~~~~~~gdptE~Al~~~a~~ 426 (917)
T COG0474 355 KTGTLTQNKMTVKKIYINGGGKDIDDKDLKDSPALLRFLLAAALCNSVTPEKNGWYQAGDPTEGALVEFAEK 426 (917)
T ss_pred CCCCCccCeEEEEEEEeCCCcccccccccccchHHHHHHHHHHhcCcccccccCceecCCccHHHHHHHHHh
Confidence 9999999999999987431011222 0 1244444554422 1 348999999998764
No 14
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=7e-55 Score=459.71 Aligned_cols=239 Identities=29% Similarity=0.450 Sum_probs=217.1
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
|++++|+||+|+++++++|.+..|++++|+|||++++|++++|+|||+|.+++||+|||||++++|+.+.||||+|||||
T Consensus 93 ~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViRdg~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~l~VDES~LTGES 172 (884)
T TIGR01522 93 VVTVGFVQEYRSEKSLEALNKLVPPECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDESNLTGET 172 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCceEEEcccccCCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999976699999999999
Q ss_pred cceecCCCC--------------eeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHH
Q 041932 81 LTISKGPGD--------------CVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICS 145 (348)
Q Consensus 81 ~pv~k~~g~--------------~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 145 (348)
.|+.|.+++ .+|+||.+.+|++.++|++||.+|.+|++.++++++ .+++++++.+++++.++.+.
T Consensus 173 ~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt~lq~~l~~l~~~~~~~ 252 (884)
T TIGR01522 173 TPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKTPLQKSMDLLGKQLSLV 252 (884)
T ss_pred cceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHH
Confidence 999999863 899999999999999999999999999999999876 56799999999999886654
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecc
Q 041932 146 IALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDK 225 (348)
Q Consensus 146 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDK 225 (348)
.++++++.+++ +++.+.+|...+..++++++++|||+||++++++++.++++|+|+|+++|+.+++|+||++|++||||
T Consensus 253 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ak~~ilvk~~~a~E~Lg~v~~Ic~DK 331 (884)
T TIGR01522 253 SFGVIGVICLV-GWFQGKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAIVRKLPSVETLGSVNVICSDK 331 (884)
T ss_pred HHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhhcCCcccchHHHHhccCccEEEecC
Confidence 43333333333 33445678888889999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCceEEEEee
Q 041932 226 TGTLTLNKLTVDKNL 240 (348)
Q Consensus 226 TGTLT~~~~~v~~~~ 240 (348)
|||||+|+|+|.+++
T Consensus 332 TGTLT~n~m~v~~i~ 346 (884)
T TIGR01522 332 TGTLTKNHMTVTKIW 346 (884)
T ss_pred ccccccCeEEEEEEE
Confidence 999999999999875
No 15
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=4.5e-52 Score=420.90 Aligned_cols=269 Identities=24% Similarity=0.260 Sum_probs=232.3
Q ss_pred hhHHHHHHhHHHHHHHHHhcCCC-ceEEEeCCe-EEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 3 TVCFIQENNAGAASTALMAHLAP-KAKVLRDGK-WKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~-~~~v~r~g~-~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
++++++|+|+++.+++|++..|+ +++|+|||+ +++|++++|++||+|.+++||+||+||++++|.. .||||+|||||
T Consensus 81 ~~e~~ae~ra~~~~~sL~~l~~~~~a~vir~g~~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~vieG~a-~VDESaLTGES 159 (679)
T PRK01122 81 FAEALAEGRGKAQADSLRGAKKDTFARKLREPGAAEEVPATELRKGDIVLVEAGEIIPADGEVIEGVA-SVDESAITGES 159 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCEEEEEEHHHcCCCCEEEEcCCCEEEEEEEEEEccE-EEEcccccCCC
Confidence 45668999999999999998886 699999988 8999999999999999999999999999999987 89999999999
Q ss_pred cceecCCCCe---eeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 81 LTISKGPGDC---VYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIV 156 (348)
Q Consensus 81 ~pv~k~~g~~---v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 156 (348)
.|+.|++|+. ||+||.+.+|++.++|+++|.+|+++++.++++++ .+++|++...+.+..++...+++.++..++
T Consensus 160 ~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~~~l~~i~l~~~~~~~~- 238 (679)
T PRK01122 160 APVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTILLAGLTIIFLLVVATLPP- 238 (679)
T ss_pred CceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHHHHhhhHHHHHHHHHHHH-
Confidence 9999999988 99999999999999999999999999999999987 567899987777665543322222222222
Q ss_pred HHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEE
Q 041932 157 MYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTV 236 (348)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v 236 (348)
++++.+..+ ++..++++++++|||+++..++.....++.+++|+|+++|+.+++|.+|++|++|||||||||+|+|.+
T Consensus 239 ~~~~~g~~~--~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~gvLvk~~~avE~lg~v~~I~~DKTGTLT~g~~~v 316 (679)
T PRK01122 239 FAAYSGGAL--SITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQANVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQA 316 (679)
T ss_pred HHHHhCchH--HHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcCCeeecCchHHHHhcCCCEEEEeCCCCCcCCcEEE
Confidence 222222233 677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcC
Q 041932 237 DKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLAD 279 (348)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~ 279 (348)
++++ ..+ +.++++++.+|++++..++ ||.++||++++++
T Consensus 317 ~~~~--~~~-~~~~~~ll~~a~~~s~~s~-hP~~~AIv~~a~~ 355 (679)
T PRK01122 317 SEFL--PVP-GVTEEELADAAQLSSLADE-TPEGRSIVVLAKQ 355 (679)
T ss_pred EEEE--eCC-CCCHHHHHHHHHHhcCCCC-CchHHHHHHHHHh
Confidence 9865 443 6788899999999998875 7999999998764
No 16
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=8.1e-52 Score=418.27 Aligned_cols=301 Identities=24% Similarity=0.271 Sum_probs=240.8
Q ss_pred hhHHHHHHhHHHHHHHHHhcCCCc-eEEEe-CCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 3 TVCFIQENNAGAASTALMAHLAPK-AKVLR-DGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~~-~~v~r-~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
+++.++|+|+++++++|++..|+. ++|+| ||++++|++++|++||+|.+++||+||+||++++|+. .||||+|||||
T Consensus 82 ~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~dg~~~~V~~~~L~~GDiV~V~~Gd~IPaDG~vieG~~-~VDESaLTGES 160 (675)
T TIGR01497 82 FAEAVAEGRGKAQADSLKGTKKTTFAKLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEGVA-SVDESAITGES 160 (675)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEEEeeCCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEccE-EEEcccccCCC
Confidence 345588889999999999988875 88885 8999999999999999999999999999999999987 99999999999
Q ss_pred cceecCCCCe---eeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 81 LTISKGPGDC---VYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIV 156 (348)
Q Consensus 81 ~pv~k~~g~~---v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 156 (348)
.|+.|++|+. ||+||.+.+|++.++|+++|.+|+++++.++++++ .+++|+|...+.+..++.+++++ +.+ +++
T Consensus 161 ~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~~l~~l~~~l~~v~li-~~~-~~~ 238 (675)
T TIGR01497 161 APVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEIALTILLIALTLVFLL-VTA-TLW 238 (675)
T ss_pred CceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH-HHH-HHH
Confidence 9999999974 99999999999999999999999999999999887 56799997777776553322221 111 111
Q ss_pred HHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEE
Q 041932 157 MYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTV 236 (348)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v 236 (348)
.|.... ....++..++++++++|||+++...+.....++.+++|+|+++|+.+++|.+|++|++|||||||||+|+|++
T Consensus 239 ~~~~~~-~~~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~ar~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v 317 (675)
T TIGR01497 239 PFAAYG-GNAISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVLGFNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLA 317 (675)
T ss_pred HHHHhc-ChhHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHCCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEE
Confidence 111111 1123466678899999999998887877778999999999999999999999999999999999999999999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCccc-----ccccccccCCC-chhhhh--hccceec
Q 041932 237 DKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVF-----HLFDFSSLSGD-QLAIAK--ETGRRLG 308 (348)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~~-----~~~d~~~i~G~-g~~~a~--~~~~~~~ 308 (348)
++++ ... +.+.++++.++++++..++ ||+++||++++++.+... ...++...+|. ++ .+. .+|+.+.
T Consensus 318 ~~~~--~~~-~~~~~~ll~~aa~~~~~s~-hP~a~Aiv~~a~~~~~~~~~~~~~~~~~~pf~~~~~~-sg~~~~~g~~~~ 392 (675)
T TIGR01497 318 SEFI--PAQ-GVDEKTLADAAQLASLADD-TPEGKSIVILAKQLGIREDDVQSLHATFVEFTAQTRM-SGINLDNGRMIR 392 (675)
T ss_pred EEEE--ecC-CCcHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHcCCCccccccccceEEEEcCCCcE-EEEEEeCCeEEE
Confidence 9865 333 6788899999999998875 799999999876433211 11123334444 23 232 2567777
Q ss_pred cccc
Q 041932 309 MGTN 312 (348)
Q Consensus 309 ig~~ 312 (348)
.|+.
T Consensus 393 kGa~ 396 (675)
T TIGR01497 393 KGAV 396 (675)
T ss_pred ECCH
Confidence 7775
No 17
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=5.5e-52 Score=440.19 Aligned_cols=241 Identities=25% Similarity=0.364 Sum_probs=210.8
Q ss_pred ChhhHHHHHHhHHHHHHHHHhc-CCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCc
Q 041932 1 NSTVCFIQENNAGAASTALMAH-LAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGE 79 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~-~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGE 79 (348)
|.++++++|+++++++++|.+. .+++++|+|||++++|++++|+|||+|.+++||+|||||++++|+.+.||||+||||
T Consensus 141 ~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g~~l~VdES~LTGE 220 (941)
T TIGR01517 141 VVLVTAVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGE 220 (941)
T ss_pred HhHHHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEcCcEEEEecccCCC
Confidence 4678999999999999999864 477899999999999999999999999999999999999999995459999999999
Q ss_pred CcceecCCCCe--eeeeeeEecceEEEEEEEecchhHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 80 SLTISKGPGDC--VYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVM 157 (348)
Q Consensus 80 s~pv~k~~g~~--v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 157 (348)
|.|+.|.+++. +|+||.+.+|++.++|++||.+|.+||+.+++.++.+++++++.++++++++...+++++++.++++
T Consensus 221 S~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~~~t~l~~~~~~~~~~~~~~~l~~~~i~~~~~ 300 (941)
T TIGR01517 221 SDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEGEDTPLQEKLSELAGLIGKFGMGSAVLLFLVL 300 (941)
T ss_pred CCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998765 9999999999999999999999999999999987767789999999998876543333222222221
Q ss_pred ---HHHh------------hchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEE
Q 041932 158 ---YAVQ------------HREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLC 222 (348)
Q Consensus 158 ---~~~~------------~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~ 222 (348)
|.+. ..+|...+..++++++++|||+||++++++++.++.+|+|+|+++|+++++|+||++|++|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~mak~~ilvk~l~a~E~lg~v~~Ic 380 (941)
T TIGR01517 301 SLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMMKDNNLVRHLAACETMGSATAIC 380 (941)
T ss_pred HHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhCCCEEechHHhhhccCceEEE
Confidence 1111 1246667788899999999999999999999999999999999999999999999999999
Q ss_pred ecccCccccCceEEEEeee
Q 041932 223 CDKTGTLTLNKLTVDKNLI 241 (348)
Q Consensus 223 fDKTGTLT~~~~~v~~~~~ 241 (348)
||||||||+|+|++.+++.
T Consensus 381 ~DKTGTLT~n~m~v~~~~~ 399 (941)
T TIGR01517 381 SDKTGTLTQNVMSVVQGYI 399 (941)
T ss_pred EcCcCceeeceEEEEEEEE
Confidence 9999999999999998763
No 18
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=2.8e-51 Score=414.76 Aligned_cols=270 Identities=22% Similarity=0.336 Sum_probs=223.7
Q ss_pred hhhHHHH----HHhHHHHHHHHHhcCCC-ceE-EEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEeccc
Q 041932 2 STVCFIQ----ENNAGAASTALMAHLAP-KAK-VLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSA 75 (348)
Q Consensus 2 ~~~~~~~----~~~~~~~~~~l~~~~~~-~~~-v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~ 75 (348)
.++++|+ |+|+++++++|++..|+ +++ |.|||++++|++++|++||+|.+++||+||+||++++|++ .||||+
T Consensus 76 ~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~rdg~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~~-~VDESa 154 (673)
T PRK14010 76 LVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQDGSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLA-TVDESA 154 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeCCEEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcce-EEecch
Confidence 4556666 78999999999999887 786 6799999999999999999999999999999999999998 999999
Q ss_pred ccCcCcceecCCC---CeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHH
Q 041932 76 LTGESLTISKGPG---DCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLI 151 (348)
Q Consensus 76 lTGEs~pv~k~~g---~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 151 (348)
|||||.|+.|++| +.||+||.+.+|++.++|+++|.+|+++|+.++++++ .+++|++.....+...+. ++ ++
T Consensus 155 LTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~~~l~--ii--~l 230 (673)
T PRK14010 155 ITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLLMTLT--II--FL 230 (673)
T ss_pred hcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHHHHHh--HH--HH
Confidence 9999999999999 8899999999999999999999999999999999887 577888855544432211 11 11
Q ss_pred HHHHHHHHH-hhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccc
Q 041932 152 LEIIVMYAV-QHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLT 230 (348)
Q Consensus 152 ~~~~~~~~~-~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT 230 (348)
+.+++++++ ....+...+...+++++++|||+++..+++....++.+|+|+|+++|+.+++|.+|.+|++|||||||||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~gvLvk~~~avE~lg~v~vI~~DKTGTLT 310 (673)
T PRK14010 231 VVILTMYPLAKFLNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILAKSGRSVETCGDVNVLILDKTGTIT 310 (673)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCEEEeCcHHHHHhhCCCEEEEeCCCcCC
Confidence 111111111 1123334455667777788999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEeeeeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCC
Q 041932 231 LNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADP 280 (348)
Q Consensus 231 ~~~~~v~~~~~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~ 280 (348)
+|++.+.++. +.. +.+.++++.+|+.++..++ ||+++||++++++.
T Consensus 311 ~Gn~~~~~~~--~~~-~~~~~~ll~~a~~~~~~s~-~P~~~AIv~~a~~~ 356 (673)
T PRK14010 311 YGNRMADAFI--PVK-SSSFERLVKAAYESSIADD-TPEGRSIVKLAYKQ 356 (673)
T ss_pred CCCeEEEEEE--eCC-CccHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHc
Confidence 9988887753 333 5677889998888887765 89999999987644
No 19
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-51 Score=406.17 Aligned_cols=241 Identities=34% Similarity=0.513 Sum_probs=215.1
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
|++++||||||+++++++|+++.|+.++|+|+|+.+.+++++|+|||+|.++-||+||||.++++..+|.+|||.|||||
T Consensus 91 nvtVG~~QEy~aEkalEaLk~l~p~~~~V~R~gk~~~i~A~eLVPGDiV~l~vGDkVPADlRl~e~~sl~iDeS~LTGEs 170 (972)
T KOG0202|consen 91 NVTVGFVQEYNAEKALEALKELVPPMAHVLRSGKLQHILARELVPGDIVELKVGDKIPADLRLIEAKSLRIDESSLTGES 170 (972)
T ss_pred eeeeeeeeehhhHHHHHHHHhcCCccceEEecCcccceehhccCCCCEEEEecCCccccceeEEeeeeeeeecccccCCc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCC--------------CCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHH
Q 041932 81 LTISKGP--------------GDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICS 145 (348)
Q Consensus 81 ~pv~k~~--------------g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 145 (348)
.|+.|.. .|++|+||.+..|.++++|+.||.+|.+|++.+++.+. ..++|+|+.+|.+.+++.-.
T Consensus 171 ~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e~~kTPLqk~ld~~G~qLs~~ 250 (972)
T KOG0202|consen 171 EPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATESPKTPLQKKLDEFGKQLSKV 250 (972)
T ss_pred ccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence 9999953 36899999999999999999999999999999999877 66899999999999886533
Q ss_pred HHHHHHHHHHH-HHHHh-----h---chHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhc
Q 041932 146 IALGLILEIIV-MYAVQ-----H---REYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMA 216 (348)
Q Consensus 146 i~~~~~~~~~~-~~~~~-----~---~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~ 216 (348)
+.++.+..++. +-++. + ..+.+.|..++++.++++|.+||..++++++.|..||+|++.++|...++|+||
T Consensus 251 is~i~v~v~~~nig~f~~p~~~g~~fk~~~~~f~IaVsLAVAAIPEGLPaVvT~tLALG~~rMakknaIVRkLPsVETLG 330 (972)
T KOG0202|consen 251 ISFICVGVWLLNIGHFLDPVHGGSWFKGALYYFKIAVSLAVAAIPEGLPAVVTTTLALGTRRMAKKNAIVRKLPSVETLG 330 (972)
T ss_pred heehhhhHHHhhhhhhccccccccchhchhhhhhHHHHHHHHhccCCCcchhhhhHHHhHHHHHhhhhhhhcccchhhcc
Confidence 33333333332 11222 2 345566777899999999999999999999999999999999999999999999
Q ss_pred CccEEEecccCccccCceEEEEeee
Q 041932 217 GMDVLCCDKTGTLTLNKLTVDKNLI 241 (348)
Q Consensus 217 ~vd~i~fDKTGTLT~~~~~v~~~~~ 241 (348)
.+++||+|||||||+|+|+++++++
T Consensus 331 c~~VICSDKTGTLTtN~Mtv~~i~~ 355 (972)
T KOG0202|consen 331 CVNVICSDKTGTLTTNQMTVSKIFI 355 (972)
T ss_pred ceeEEecCCCCcccccceEEEEEEe
Confidence 9999999999999999999999774
No 20
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=8.3e-50 Score=398.93 Aligned_cols=288 Identities=31% Similarity=0.422 Sum_probs=238.2
Q ss_pred hhhHHHHHHhHHHHHHHHHh--cCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCc
Q 041932 2 STVCFIQENNAGAASTALMA--HLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGE 79 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGE 79 (348)
.+++.++++++.++.+.|.+ ..|++++|+|+| +++|++++|+|||+|.+++||+|||||++++|++ .||||+||||
T Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~g-~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g~~-~vdes~LTGE 87 (499)
T TIGR01494 10 ALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRNG-WKEIPASDLVPGDIVLVKSGEIVPADGVLLSGSC-FVDESNLTGE 87 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCeEEEEECC-eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEccE-EEEcccccCC
Confidence 56788999999999999998 788899999999 9999999999999999999999999999999998 8999999999
Q ss_pred CcceecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhcccccC-CCChHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 041932 80 SLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTN-HVGHFQKILTAVG-KYCICSIALGLILEIIVM 157 (348)
Q Consensus 80 s~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~~-~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 157 (348)
|.|+.|++|+.+++||.+.+|++.++|+++|.+|..+++..++..+. .++++++..++++ .++++.+++++++.++++
T Consensus 88 s~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 167 (499)
T TIGR01494 88 SVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILFVLLIALAVFLFW 167 (499)
T ss_pred CCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998774 4788999999998 666654443333333322
Q ss_pred HHHhhc--hHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceE
Q 041932 158 YAVQHR--EYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLT 235 (348)
Q Consensus 158 ~~~~~~--~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~ 235 (348)
+..... +|..++.+++++++++|||+|++++|++...+..+++++|+++|+++++|+|+++|++|||||||||+|+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~gilvk~~~~lE~l~~v~~i~fDKTGTLT~~~~~ 247 (499)
T TIGR01494 168 AIGLWDPNSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKKGIVVRSLNALEELGKVDYICSDKTGTLTKNEMS 247 (499)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHCCcEEechhhhhhccCCcEEEeeCCCccccCceE
Confidence 222222 377889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCcccccccccccCCCchhhhhhcc--ceeccccc
Q 041932 236 VDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETG--RRLGMGTN 312 (348)
Q Consensus 236 v~~~~~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~~~~~d~~~i~G~g~~~a~~~~--~~~~ig~~ 312 (348)
+.++. ..+ + ++.+ .||+++||+++++.... +..++...+ +|+ .+...+ +.+..|+.
T Consensus 248 v~~~~--~~~-~-------------~~~s-~hp~~~ai~~~~~~~~~--~~~~f~~~~-~~~-~~~~~~~~~~~~~G~~ 305 (499)
T TIGR01494 248 FKKVS--VLG-G-------------EYLS-GHPDERALVKSAKWKIL--NVFEFSSVR-KRM-SVIVRGPDGTYVKGAP 305 (499)
T ss_pred EEEEE--ecC-C-------------CcCC-CChHHHHHHHHhhhcCc--ceeccCCCC-ceE-EEEEecCCcEEEeCCH
Confidence 99875 222 1 3344 48999999998864322 223444444 444 333332 34445554
No 21
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=2.7e-49 Score=418.39 Aligned_cols=240 Identities=32% Similarity=0.489 Sum_probs=210.2
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
|++++++||+|+++++++|++..+++++|+|||++++|++++|+|||+|.+++||.|||||++++|+.+.||||+|||||
T Consensus 49 ~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRdg~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~~~l~VdeS~LTGES 128 (917)
T TIGR01116 49 NAIVGVWQERNAEKAIEALKEYESEHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLKTLRVDQSILTGES 128 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEecceEEEcccccCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999975699999999999
Q ss_pred cceecCCC-------------CeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHH
Q 041932 81 LTISKGPG-------------DCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSI 146 (348)
Q Consensus 81 ~pv~k~~g-------------~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i 146 (348)
.|+.|.++ +.+|+||.+.+|++.++|++||.+|++||+.+++... .+++++++.+++++.++...+
T Consensus 129 ~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~~~~t~lq~~l~~~~~~l~~~~ 208 (917)
T TIGR01116 129 VSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAEQEDTPLQKKLDEFGELLSKVI 208 (917)
T ss_pred CcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999876 7899999999999999999999999999999988776 568999999999988765443
Q ss_pred HHHHHHHHHHHHHH-h----hchH----HHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcC
Q 041932 147 ALGLILEIIVMYAV-Q----HREY----RTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAG 217 (348)
Q Consensus 147 ~~~~~~~~~~~~~~-~----~~~~----~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~ 217 (348)
++++++.+++.+.. . ..+| ...+..++++++++|||+||++++++++.++++|+++|+++|+++++|+||+
T Consensus 209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~v~~iP~~Lp~~vti~l~~~~~~m~~~~ilvk~~~~iE~lg~ 288 (917)
T TIGR01116 209 GLICILVWVINIGHFNDPALGGGWIQGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKKNAIVRKLPSVETLGC 288 (917)
T ss_pred HHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHHCCcEecCcHHHHhccC
Confidence 33333222221111 1 1122 2334456788899999999999999999999999999999999999999999
Q ss_pred ccEEEecccCccccCceEEEEee
Q 041932 218 MDVLCCDKTGTLTLNKLTVDKNL 240 (348)
Q Consensus 218 vd~i~fDKTGTLT~~~~~v~~~~ 240 (348)
+|++|||||||||+|+|+|.+++
T Consensus 289 v~~ic~DKTGTLT~n~m~v~~~~ 311 (917)
T TIGR01116 289 TTVICSDKTGTLTTNQMSVCKVV 311 (917)
T ss_pred ceEEEecCCccccCCeEEEEEEE
Confidence 99999999999999999999976
No 22
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=4.3e-49 Score=419.47 Aligned_cols=277 Identities=21% Similarity=0.330 Sum_probs=234.9
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
|++++|+||+|+++++++|.+..+++++|+|||++++|++++|+|||+|.+++||+|||||++++|+.+.||||+|||||
T Consensus 117 ~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~~~l~VdeS~LTGES 196 (997)
T TIGR01106 117 TGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQGCKVDNSSLTGES 196 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEccCcEEEccccCCCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999986699999999999
Q ss_pred cceecCCCC----------eeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHH
Q 041932 81 LTISKGPGD----------CVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALG 149 (348)
Q Consensus 81 ~pv~k~~g~----------~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ 149 (348)
.|+.|.+++ .+|+||.+.+|++.++|++||.+|.+|++.+++++. .+++++++.+++++.++...++++
T Consensus 197 ~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ 276 (997)
T TIGR01106 197 EPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKTPIAIEIEHFIHIITGVAVFL 276 (997)
T ss_pred CceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999998864 799999999999999999999999999999988766 567999999999988766544333
Q ss_pred HHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCcc
Q 041932 150 LILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTL 229 (348)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTL 229 (348)
.++ +++.++..+..|...+..++++++++|||+||++++++++.++.+|+++|+++|+++++|+||++|++||||||||
T Consensus 277 ~~~-~~~~~~~~~~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTL 355 (997)
T TIGR01106 277 GVS-FFILSLILGYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTL 355 (997)
T ss_pred HHH-HHHHHHHhcCCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHCCcEecCcHHHHHhcCCCEEEECCCCce
Confidence 332 3333344456777888888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEEeeeee--cc-CC--------CC-----HHHHHHHHHHHcCC---------------CCCChHHHHHHhhhc
Q 041932 230 TLNKLTVDKNLIEI--FA-KG--------VD-----VDTVVLMAARASQL---------------ENLDVIDAAVVGMLA 278 (348)
Q Consensus 230 T~~~~~v~~~~~~~--~~-~~--------~~-----~~~~l~~aa~~~~~---------------~~~~pia~Ai~~~~~ 278 (348)
|+|+|+|.++++.. +. .+ ++ .++++.++++++.. ...+|.+.|+++++.
T Consensus 356 T~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~alcn~~~~~~~~~~~~~~~~~~~gdp~E~ALl~~a~ 435 (997)
T TIGR01106 356 TQNRMTVAHMWFDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLCNRAVFKAGQENVPILKRAVAGDASESALLKCIE 435 (997)
T ss_pred ecCceEEEEEEECCeEEecCCccCCCCccCCcccHHHHHHHHHHHHcCCCeeccccCCCcccccccCcChHHHHHHHHHH
Confidence 99999999876321 00 00 11 12466666666421 013689999988754
No 23
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=2.3e-48 Score=413.72 Aligned_cols=238 Identities=29% Similarity=0.426 Sum_probs=208.0
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
|++++|+||+|+++++++|+++.+++++|+|||++++|++++|+|||+|.+++||+|||||+|++++.|.||||+|||||
T Consensus 94 n~~i~~~QE~~aekal~aL~~l~~~~~~ViRdg~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi~~~~L~VDES~LTGES 173 (1053)
T TIGR01523 94 NILIGFIQEYKAEKTMDSLKNLASPMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGES 173 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCeeeecCHhhCCCCCEEEECCCCEeeccEEEEEeCceEEEchhhcCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cceecCCC---------------CeeeeeeeEecceEEEEEEEecchhHHHHHHhcccccC-------------------
Q 041932 81 LTISKGPG---------------DCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTN------------------- 126 (348)
Q Consensus 81 ~pv~k~~g---------------~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~~------------------- 126 (348)
.|+.|.+. |++|+||.+.+|+++++|++||.+|.+|++.+++.+..
T Consensus 174 ~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1053)
T TIGR01523 174 LPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGLFQRPEKDDPNKRRKLNK 253 (1053)
T ss_pred CceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhhhccccccccccccchhhhc
Confidence 99999642 57899999999999999999999999999999885421
Q ss_pred -----------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHH
Q 041932 127 -----------------HVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLS 189 (348)
Q Consensus 127 -----------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~ 189 (348)
.++|+|+.++++++++..+.++++++.++.. .. ..+...+..+++++++++|.+||..++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~-~~--~~~~~~~~~av~l~Va~VPegLp~~vt 330 (1053)
T TIGR01523 254 WILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAH-KF--DVDKEVAIYAICLAISIIPESLIAVLS 330 (1053)
T ss_pred ccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hhhHHHHHHHHHHHHHHcccchHHHHH
Confidence 1389999999998875443332222222211 11 112355566788999999999999999
Q ss_pred HHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEEeee
Q 041932 190 VIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLI 241 (348)
Q Consensus 190 ~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~~~ 241 (348)
+++++++++|+++++++|+++++|+||.+++||+|||||||+|+|+|+++++
T Consensus 331 i~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i~~ 382 (1053)
T TIGR01523 331 ITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIWI 382 (1053)
T ss_pred HHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999764
No 24
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=2.8e-45 Score=392.48 Aligned_cols=237 Identities=26% Similarity=0.317 Sum_probs=203.1
Q ss_pred ChhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEc--CCCEEeeeEEEEecCccEEecccccC
Q 041932 1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVK--LGDIVPADARLLEGDPLTIDQSALTG 78 (348)
Q Consensus 1 n~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~--~Ge~iPaDg~vl~g~~l~vdes~lTG 78 (348)
|.+++++|++|+.++++++.. .++.++|+|||++++|++++|+|||+|.++ +|++|||||+|++|++ .||||+|||
T Consensus 206 ~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~Rdg~~~~I~s~eLvpGDiv~l~~~~g~~iPaD~~ll~g~~-~VdES~LTG 283 (1054)
T TIGR01657 206 SISLSVYQIRKQMQRLRDMVH-KPQSVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSGSC-IVNESMLTG 283 (1054)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-CCeeEEEEECCEEEEEEcccCCCCCEEEEecCCCCEecceEEEEeCcE-EEecccccC
Confidence 457789999999999998764 578999999999999999999999999999 9999999999999987 899999999
Q ss_pred cCcceecCCC------------------CeeeeeeeEec-------ceEEEEEEEecchhHHHHHHhccccc-CCCChHH
Q 041932 79 ESLTISKGPG------------------DCVYSGSTCKR-------GEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQ 132 (348)
Q Consensus 79 Es~pv~k~~g------------------~~v~aGt~~~~-------g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~ 132 (348)
||.|+.|.+. +++|+||.+.+ |.+.++|++||.+|..|++.+++... ...++++
T Consensus 284 ES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T~~G~i~~~i~~~~~~~~~~~ 363 (1054)
T TIGR01657 284 ESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFSTSKGQLVRSILYPKPRVFKFY 363 (1054)
T ss_pred CccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccccchHHHHHhhCCCCCCCchH
Confidence 9999999762 35999999985 78999999999999999999988765 4557778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHh
Q 041932 133 KILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAI 212 (348)
Q Consensus 133 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~l 212 (348)
+...++..+++...++++++ +++.+...+.++...+.+++.++++++|++||++++++++.+..+|+|+|+++|++.++
T Consensus 364 ~~~~~~~~~l~~~a~i~~i~-~~~~~~~~~~~~~~~~l~~l~iiv~~vP~~LP~~~ti~l~~~~~rL~k~~il~~~~~~i 442 (1054)
T TIGR01657 364 KDSFKFILFLAVLALIGFIY-TIIELIKDGRPLGKIILRSLDIITIVVPPALPAELSIGINNSLARLKKKGIFCTSPFRI 442 (1054)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCcHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHCCEEEcCcccc
Confidence 87777765533222211111 11122233457778888899999999999999999999999999999999999999999
Q ss_pred hhhcCccEEEecccCccccCceEEEEee
Q 041932 213 VHMAGMDVLCCDKTGTLTLNKLTVDKNL 240 (348)
Q Consensus 213 e~l~~vd~i~fDKTGTLT~~~~~v~~~~ 240 (348)
|.+|++|++|||||||||+|+|+|.+++
T Consensus 443 e~lG~v~vicfDKTGTLTen~m~v~~v~ 470 (1054)
T TIGR01657 443 NFAGKIDVCCFDKTGTLTEDGLDLRGVQ 470 (1054)
T ss_pred eecceeeEEEEcCCCCCccCCeeEEeEe
Confidence 9999999999999999999999999976
No 25
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=344.29 Aligned_cols=233 Identities=26% Similarity=0.376 Sum_probs=189.2
Q ss_pred HHhHHHHHHHHHh-cCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcceecCC
Q 041932 9 ENNAGAASTALMA-HLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGP 87 (348)
Q Consensus 9 ~~~~~~~~~~l~~-~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~k~~ 87 (348)
+|+.++..+.|.+ ....+..|+|||+.++|++.||++||++.++.||.+||||++++|+.|.+|||++||||.++.|.+
T Consensus 203 Dy~qe~QF~~L~~~k~~~k~~ViR~G~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~ 282 (1034)
T KOG0204|consen 203 DYRQELQFRKLQKEKRNIKFQVIRGGRRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSL 282 (1034)
T ss_pred hhHHhhhhhhhhhhhhceEEEEEECCEEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccC
Confidence 3444444444442 234568899999999999999999999999999999999999999999999999999999999987
Q ss_pred --CCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 041932 88 --GDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCI---CSIALGLILEIIVMYAVQ 161 (348)
Q Consensus 88 --g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~ 161 (348)
..++++||++.+|++++.|+.+|-+|..|++..++.+. ..++|+|-.+++++...- ..+....++.++..|+..
T Consensus 283 ~~dPfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~tpLQ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~ 362 (1034)
T KOG0204|consen 283 DKDPFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEETPLQVKLNGLATQIGKIGLLFAALTFIVLVIRFFIG 362 (1034)
T ss_pred CCCCeEeecceeecCcceEEEEEeeecchHhhHHHhhhcCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 56899999999999999999999999999999998877 478899888887764311 111111111112222211
Q ss_pred -----h-----------chHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecc
Q 041932 162 -----H-----------REYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDK 225 (348)
Q Consensus 162 -----~-----------~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDK 225 (348)
+ ..+...|..++.++++++|.+||+|+++++++++++|.+.+.|+|+.+++|+||.+++||+||
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDK 442 (1034)
T KOG0204|consen 363 KTKIEGGTGTTWSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDK 442 (1034)
T ss_pred eeecCCCCCccccHHHHHHHHHHhhheeEEEEEECCCCccHHHHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecC
Confidence 0 112233445677889999999999999999999999999999999999999999999999999
Q ss_pred cCccccCceEEEEeee
Q 041932 226 TGTLTLNKLTVDKNLI 241 (348)
Q Consensus 226 TGTLT~~~~~v~~~~~ 241 (348)
|||||+|+|+|.+.++
T Consensus 443 TGTLT~N~MtVV~~~~ 458 (1034)
T KOG0204|consen 443 TGTLTTNRMTVVQSYI 458 (1034)
T ss_pred cCceEeeeEEEEeeee
Confidence 9999999999999764
No 26
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=9.4e-40 Score=294.90 Aligned_cols=211 Identities=35% Similarity=0.505 Sum_probs=186.1
Q ss_pred hhhHHHHHHhHHHHHHHHHhcCCCc-eEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEe-cCccEEecccccCc
Q 041932 2 STVCFIQENNAGAASTALMAHLAPK-AKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLE-GDPLTIDQSALTGE 79 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~-g~~l~vdes~lTGE 79 (348)
.++++++++|+++.++++++..+++ ++|+|||+++++++++|+|||+|++++||++||||++++ |.+ .||||.+|||
T Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~~g~~-~vd~s~ltGe 88 (230)
T PF00122_consen 10 NIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLESGSA-YVDESALTGE 88 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEESSEE-EEECHHHHSB
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhccceeeeecccccccccCccceecccc-cccccccccc
Confidence 4678999999999999999888887 999999999999999999999999999999999999999 887 8999999999
Q ss_pred CcceecC-----CCCeeeeeeeEecceEEEEEEEecchhHHHHHHhcccccC-CCChHHHHHHHHHHHHHHHHHHHHHHH
Q 041932 80 SLTISKG-----PGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTN-HVGHFQKILTAVGKYCICSIALGLILE 153 (348)
Q Consensus 80 s~pv~k~-----~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 153 (348)
+.|+.|. +|+.+|+||.+.+|.+.++|++||.+|.++++.+....+. +++++++..+++..++++++++++++.
T Consensus 89 s~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (230)
T PF00122_consen 89 SEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIAKILIIIILAIAILV 168 (230)
T ss_dssp SSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHHHHHHhcccccchhh
Confidence 9999999 9999999999999999999999999999999999887764 458999999999988766554444433
Q ss_pred HHHHHHH--hhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhh
Q 041932 154 IIVMYAV--QHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVH 214 (348)
Q Consensus 154 ~~~~~~~--~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~ 214 (348)
+ +.|+. ...+|...+..++++++.+|||++|++++++...++.++.++|+++|+++++|.
T Consensus 169 ~-~~~~~~~~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~~i~v~~~~a~E~ 230 (230)
T PF00122_consen 169 F-IIWFFNDSGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKNGIIVKNLSALEA 230 (230)
T ss_dssp H-HHCHTGSTTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHTTEEESSTTHHHH
T ss_pred h-ccceecccccccccccccccceeeeecccceeehHHHHHHHHHHHHHHCCEEEeCcccccC
Confidence 3 33333 567788888899999999999999999999999999999999999999999994
No 27
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=1.5e-36 Score=325.98 Aligned_cols=234 Identities=20% Similarity=0.224 Sum_probs=188.9
Q ss_pred hhhHHHHHHhHHHHHHHHHhcCCCceEEEeC-CeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEe-----cCccEEeccc
Q 041932 2 STVCFIQENNAGAASTALMAHLAPKAKVLRD-GKWKEEDAAILVPGDVISVKLGDIVPADARLLE-----GDPLTIDQSA 75 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~-g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~-----g~~l~vdes~ 75 (348)
++.+++|+++.+++.+++. +++++|+|+ |+++++++++|+|||+|.|++||+||||+++++ |.+ .||||+
T Consensus 65 ~~~~~~ed~~r~~~d~~~n---~~~~~v~~~~~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~ss~~~g~~-~v~~s~ 140 (1057)
T TIGR01652 65 AIKEAIEDIRRRRRDKEVN---NRLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSSSEPDGVC-YVETAN 140 (1057)
T ss_pred HHHHHHHHHHHHHhHHHHh---CcEEEEECCCCcEEEeeeecccCCCEEEEcCCCcccceEEEEeccCCCceE-EEEeec
Confidence 4578899999999887654 478999997 899999999999999999999999999999997 556 899999
Q ss_pred ccCcCcceecCCC------------------------------------------------CeeeeeeeEec-ceEEEEE
Q 041932 76 LTGESLTISKGPG------------------------------------------------DCVYSGSTCKR-GEIQAVV 106 (348)
Q Consensus 76 lTGEs~pv~k~~g------------------------------------------------~~v~aGt~~~~-g~~~~~V 106 (348)
||||+.|+.|++. |.+++||.+.+ |.+.++|
T Consensus 141 l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l~~~N~l~rGs~l~nt~~~~gvV 220 (1057)
T TIGR01652 141 LDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYPLSPDNILLRGCTLRNTDWVIGVV 220 (1057)
T ss_pred cCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCcccCCHHHhHhcCCEecCCCeEEEEE
Confidence 9999999998641 46788888888 8999999
Q ss_pred EEecchhHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----chH---------------HH
Q 041932 107 IATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQH----REY---------------RT 167 (348)
Q Consensus 107 ~~~G~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~---------------~~ 167 (348)
++||.+|++++... ....+++++++.++++..+.+.+.++++++.+++.+.+.. ..| ..
T Consensus 221 vyTG~~Tk~~~n~~--~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 298 (1057)
T TIGR01652 221 VYTGHDTKLMRNAT--QAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWNDAHGKDLWYIRLDVSERNAAANGFF 298 (1057)
T ss_pred EEEchhhhhhhcCC--CCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheecccCCCccceecCcccccchhHHHH
Confidence 99999999876422 2235678999999999877544333333332222111111 011 22
Q ss_pred HHhhhhhhhhcccccchhHHHHHHHHHHH------HHHHhC----CceeechhHhhhhcCccEEEecccCccccCceEEE
Q 041932 168 GLDNLLVPLIGGVPIALPTVLSVIMAIGS------QQLSLQ----GVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVD 237 (348)
Q Consensus 168 ~l~~~~~~li~~~P~al~~~~~~~~~~~~------~~l~k~----gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~ 237 (348)
.+..++.++..++|.+|+..+.++...++ .+|.++ ++++|+.+..|+||++++||+|||||||+|+|+++
T Consensus 299 ~~~~~~~L~~~~IPisL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~E~LG~v~~I~sDKTGTLT~N~M~~~ 378 (1057)
T TIGR01652 299 SFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNEELGQVEYIFSDKTGTLTQNIMEFK 378 (1057)
T ss_pred HHHHHHHHHhhhcceeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCChHHhcCeeEEEEcCCCceeeeeEEEE
Confidence 45567788889999999999999998888 777764 59999999999999999999999999999999999
Q ss_pred Eeee
Q 041932 238 KNLI 241 (348)
Q Consensus 238 ~~~~ 241 (348)
++++
T Consensus 379 ~~~i 382 (1057)
T TIGR01652 379 KCSI 382 (1057)
T ss_pred EEEE
Confidence 9864
No 28
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=304.27 Aligned_cols=235 Identities=26% Similarity=0.395 Sum_probs=195.7
Q ss_pred hhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcC-CCEEeeeEEEEecCccEEecccccCcC
Q 041932 2 STVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKL-GDIVPADARLLEGDPLTIDQSALTGES 80 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~-Ge~iPaDg~vl~g~~l~vdes~lTGEs 80 (348)
..++.+|+++..+.++++. ..+..++|+|||.|++|.++||+|||++.+.+ +-..|||+++++|+| .||||+|||||
T Consensus 228 i~~sv~e~r~qs~rlr~mv-~~~~~V~V~R~g~~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g~c-ivNEsmLTGES 305 (1140)
T KOG0208|consen 228 IVLSVYETRKQSIRLRSMV-KFTCPVTVIRDGFWETVDSSELVPGDILYIPPPGKIMPCDALLISGDC-IVNESMLTGES 305 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCceEEEEECCEEEEEeccccccccEEEECCCCeEeecceEEEeCcE-EeecccccCCc
Confidence 3567889999999999997 45678999999999999999999999999998 899999999999999 69999999999
Q ss_pred cceecCC-------------------CCeeeeeeeEec------ceEEEEEEEecchhHHHHHHhcccccCCCChHHHHH
Q 041932 81 LTISKGP-------------------GDCVYSGSTCKR------GEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKIL 135 (348)
Q Consensus 81 ~pv~k~~-------------------g~~v~aGt~~~~------g~~~~~V~~~G~~t~~~~i~~~~~~~~~~~~~~~~~ 135 (348)
.|+.|.+ -+.+|+||.+.+ +.+.++|++||.+|..|++.+.+-.+. +.+++-+-
T Consensus 306 VPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g~~v~a~V~RTGF~T~KGqLVRsilyPk-P~~fkfyr 384 (1140)
T KOG0208|consen 306 VPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLGGPVLAMVLRTGFSTTKGQLVRSILYPK-PVNFKFYR 384 (1140)
T ss_pred ccccccCCccccccCcCeeechhhcCcceeeccceEEEeecCCCCceEEEEEeccccccccHHHHhhcCCC-CcccHHHH
Confidence 9999987 247999999875 679999999999999999998877552 22333333
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhh
Q 041932 136 TAV--GKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIV 213 (348)
Q Consensus 136 ~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le 213 (348)
|.+ ...+.++.+++++ ..++.+...+.+....+.+++.++.+.+|+|||.++++...++..||.|+||++-++..+.
T Consensus 385 ds~~fi~~l~~ia~~gfi-y~~i~l~~~g~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk~IfCisP~rIn 463 (1140)
T KOG0208|consen 385 DSFKFILFLVIIALIGFI-YTAIVLNLLGVPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKKGIFCISPQRIN 463 (1140)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhHhHHHcCCCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhcCeEEcCcccee
Confidence 333 2222222122222 2223344556778888899999999999999999999999999999999999999999999
Q ss_pred hhcCccEEEecccCccccCceEEEEee
Q 041932 214 HMAGMDVLCCDKTGTLTLNKLTVDKNL 240 (348)
Q Consensus 214 ~l~~vd~i~fDKTGTLT~~~~~v~~~~ 240 (348)
..|++|++|||||||||++.+.+-.+.
T Consensus 464 ~~G~i~~~cFDKTGTLTEdGLDl~gv~ 490 (1140)
T KOG0208|consen 464 LCGKLNLVCFDKTGTLTEDGLDLWGVV 490 (1140)
T ss_pred ecceeeEEEEcCCCcccccceeEEEEE
Confidence 999999999999999999999998765
No 29
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-37 Score=303.23 Aligned_cols=239 Identities=26% Similarity=0.396 Sum_probs=213.5
Q ss_pred hhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcc
Q 041932 3 TVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLT 82 (348)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~p 82 (348)
+.+|+|+.+..+.++++.++.|+.++|+|||...++..++|++||++.++-||+||||.+++++..+++|+|+|||||.|
T Consensus 141 ~~~~~qe~ks~~im~sF~~l~P~~~~ViRdg~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGesEP 220 (1019)
T KOG0203|consen 141 LFSYYQEAKSSKIMDSFKNLVPQQALVIRDGEKMTINAEELVVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGESEP 220 (1019)
T ss_pred cCCCccchhhHHHHHHHhccchhhheeeecceeEEechhhcccccceeeccCCcccceeEEEEecceeEeccccccccCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred eecCC----------CCeeeeeeeEecceEEEEEEEecchhHHHHHHhcccc-cCCCChHHHHHHHHHHHHHHHHHHHHH
Q 041932 83 ISKGP----------GDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDT-TNHVGHFQKILTAVGKYCICSIALGLI 151 (348)
Q Consensus 83 v~k~~----------g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~ 151 (348)
..+.+ .|+-|.+|.+.+|.+++.|++||.+|.+|++..+... ...+++++..++++..+...+.+ ...
T Consensus 221 ~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~~~~ei~~fi~~it~vAi-~~~ 299 (1019)
T KOG0203|consen 221 QTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATGDRTVMGRIASLASGLEDGKTPIAKEIEHFIHIITGVAI-FLG 299 (1019)
T ss_pred ccCCccccccCchhheeeeeeeeEEecceEEEEEEecCCceEEeehhhhhccCCCCCCcchhhhhchHHHHHHHHH-HHH
Confidence 99986 3688999999999999999999999999999988765 47788999999998776443222 222
Q ss_pred HHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCcccc
Q 041932 152 LEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTL 231 (348)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~ 231 (348)
+++|..-...+..|..++..++.++++-+|.+|+..++.++....++|+++++++|+.++.|.+|...++|+|||||||+
T Consensus 300 i~fF~~~~~~gy~~l~avv~~i~iivAnvPeGL~~tvTv~LtltakrMa~Knc~vknLeavetlGsts~I~SDktGTlTq 379 (1019)
T KOG0203|consen 300 ISFFILALILGYEWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQ 379 (1019)
T ss_pred HHHHHHHHhhcchhHHHhhhhheeEEecCcCCccceehhhHHHHHHHHhhceeEEeeeeheeecccceeEeecceeeEEe
Confidence 23333333347788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeeee
Q 041932 232 NKLTVDKNLIE 242 (348)
Q Consensus 232 ~~~~v~~~~~~ 242 (348)
|+|+|.+++++
T Consensus 380 nrMtVahlw~d 390 (1019)
T KOG0203|consen 380 NRMTVAHLWFD 390 (1019)
T ss_pred cceEEEeeccC
Confidence 99999998754
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=3.4e-32 Score=291.36 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=177.6
Q ss_pred hhhHHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEe-----cCccEEecccc
Q 041932 2 STVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLE-----GDPLTIDQSAL 76 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~-----g~~l~vdes~l 76 (348)
++-+.+|+++.+++.++.. +.+++|+|+|++++++|++|++||+|.|++||.+||||++++ |.+ +||||+|
T Consensus 151 ~ike~~Ed~~r~k~d~~~N---~~~~~v~~~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~-~Vdts~L 226 (1178)
T PLN03190 151 AVKDAYEDWRRHRSDRIEN---NRLAWVLVDDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVA-YVQTINL 226 (1178)
T ss_pred HHHHHHHHHHHHHhHHhhc---CcEEEEEECCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCceE-EEEcccc
Confidence 3457788888888877654 478999999999999999999999999999999999999998 777 8999999
Q ss_pred cCcCcceecCCC---------------------------------------------CeeeeeeeEecc-eEEEEEEEec
Q 041932 77 TGESLTISKGPG---------------------------------------------DCVYSGSTCKRG-EIQAVVIATG 110 (348)
Q Consensus 77 TGEs~pv~k~~g---------------------------------------------~~v~aGt~~~~g-~~~~~V~~~G 110 (348)
|||+.|+.|.++ +.++.|+.+.+. .+.++|++||
T Consensus 227 dGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG 306 (1178)
T PLN03190 227 DGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCG 306 (1178)
T ss_pred CCeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEec
Confidence 999999999753 245556666643 6999999999
Q ss_pred chhHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhh-c-----hH-----------------
Q 041932 111 VHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIV--MYAVQH-R-----EY----------------- 165 (348)
Q Consensus 111 ~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~-~-----~~----------------- 165 (348)
.+|+..+ +......+++++++.++++..+++.+.+++++++.+. .|.... . .|
T Consensus 307 ~dTK~~~--N~~~~~~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 384 (1178)
T PLN03190 307 RETKAML--NNSGAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLRRHRDELDTIPFYRRKDFSEGGPKNYNYY 384 (1178)
T ss_pred hhhhHhh--cCCCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence 9999532 2222236779999999999876444333333222222 121100 0 00
Q ss_pred ------HHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCC----------ceeechhHhhhhcCccEEEecccCcc
Q 041932 166 ------RTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQG----------VITKRMTAIVHMAGMDVLCCDKTGTL 229 (348)
Q Consensus 166 ------~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~g----------ilvk~~~~le~l~~vd~i~fDKTGTL 229 (348)
...+...+.++...+|.+|++.+.+.....+..+.++. ..+|+.+..|+||+|++||+||||||
T Consensus 385 ~~~~~~~~~f~~~lil~~~~IPISL~Vtleivk~~qa~~I~~D~~m~~~~~~~~~~vr~snl~EeLGqV~yIfSDKTGTL 464 (1178)
T PLN03190 385 GWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTL 464 (1178)
T ss_pred hhhHHHHHHHHHHHHHHHhhcceeeeeeHHHHHHHHHHHHHhhhhcccccCCCcceeccCcchhhhccceEEEEcCCCcc
Confidence 11122234566688999999999998877566665443 77999999999999999999999999
Q ss_pred ccCceEEEEeee
Q 041932 230 TLNKLTVDKNLI 241 (348)
Q Consensus 230 T~~~~~v~~~~~ 241 (348)
|+|+|++.++.+
T Consensus 465 T~N~M~fk~~~i 476 (1178)
T PLN03190 465 TENKMEFQCASI 476 (1178)
T ss_pred ccceEEEEEEEE
Confidence 999999999875
No 31
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.98 E-value=7.6e-32 Score=255.44 Aligned_cols=264 Identities=25% Similarity=0.325 Sum_probs=203.8
Q ss_pred HHhHHHHHHHHHhcCC-CceEEEeC-CeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcceecC
Q 041932 9 ENNAGAASTALMAHLA-PKAKVLRD-GKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKG 86 (348)
Q Consensus 9 ~~~~~~~~~~l~~~~~-~~~~v~r~-g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~k~ 86 (348)
|-|.+....+|++... ..++++++ |.++.+++.+|+.||+|+|..||.||+||.+++|.+ +||||.+||||-|+.|+
T Consensus 87 EGrgKAqAdsLr~~~~~~~A~~l~~~g~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~a-sVdESAITGESaPVire 165 (681)
T COG2216 87 EGRGKAQADSLRKTKTETIARLLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVA-SVDESAITGESAPVIRE 165 (681)
T ss_pred cccchHHHHHHHHHHHHHHHHHhcCCCCeeeccccccccCCEEEEecCCCccCCCeEEeeee-ecchhhccCCCcceeec
Confidence 3344433344443222 34666665 899999999999999999999999999999999999 99999999999999999
Q ss_pred CC---CeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 041932 87 PG---DCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQ- 161 (348)
Q Consensus 87 ~g---~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~- 161 (348)
+| +.|-.||.+.+.+++++++....+|++.+++.+++.+ .+|+|-+--++-+..-+ .+.+++.....|.+.
T Consensus 166 sGgD~ssVtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~L----TliFL~~~~Tl~p~a~ 241 (681)
T COG2216 166 SGGDFSSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNEIALTILLSGL----TLIFLLAVATLYPFAI 241 (681)
T ss_pred cCCCcccccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhHHHHHHHHHHH----HHHHHHHHHhhhhHHH
Confidence 98 7899999999999999999999999999999999987 55666544333332111 111111111112111
Q ss_pred -hchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEEee
Q 041932 162 -HREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNL 240 (348)
Q Consensus 162 -~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~~ 240 (348)
...-...+...++++++.+|-.+.-.++..-..++.|+.+.|++-+++.+.|..|.+|+++.|||||+|-|+-.-++++
T Consensus 242 y~~g~~~~i~~LiALlV~LIPTTIGgLLsAIGIAGMdRv~~~NViA~SGRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~ 321 (681)
T COG2216 242 YSGGGAASVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVTQFNVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFI 321 (681)
T ss_pred HcCCCCcCHHHHHHHHHHHhcccHHHHHHHhhhhhhhHhhhhceeecCcchhhhcCCccEEEecccCceeecchhhhhee
Confidence 1011123445678888899988877777666779999999999999999999999999999999999999987777765
Q ss_pred eeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCC
Q 041932 241 IEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPK 281 (348)
Q Consensus 241 ~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~ 281 (348)
+.. |.+.+++.++|.+++-.++ .|-.++|+..+++.+
T Consensus 322 --p~~-gv~~~~la~aa~lsSl~De-TpEGrSIV~LA~~~~ 358 (681)
T COG2216 322 --PVP-GVSEEELADAAQLASLADE-TPEGRSIVELAKKLG 358 (681)
T ss_pred --cCC-CCCHHHHHHHHHHhhhccC-CCCcccHHHHHHHhc
Confidence 544 8999999999988888765 599999998877543
No 32
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.1e-30 Score=254.00 Aligned_cols=263 Identities=24% Similarity=0.241 Sum_probs=188.1
Q ss_pred HHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcC---CCEEeeeEEEEecCccEEecccccCcCccee
Q 041932 8 QENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKL---GDIVPADARLLEGDPLTIDQSALTGESLTIS 84 (348)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~---Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~ 84 (348)
|+.|+-..++.+. .-|..+.|+|+++|+.+..+||.|||+|.+.. ...||||.+++.|+| -|||+||||||.|..
T Consensus 237 Qrm~~lse~R~Mg-~kpy~I~v~R~kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~Gsc-iVnEaMLtGESvPl~ 314 (1160)
T KOG0209|consen 237 QRMRTLSEFRTMG-NKPYTINVYRNKKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGSC-IVNEAMLTGESVPLM 314 (1160)
T ss_pred HHHHHHHHHHhcC-CCceEEEEEecCcceeccccccCCCceEEeccCcccCcCCceEEEEecce-eechhhhcCCCcccc
Confidence 4444444444443 45667899999999999999999999999986 579999999999999 699999999999999
Q ss_pred cCC-----------------CCeeeeeeeEec-------------ceEEEEEEEecchhHHHHHHhcccccCCCChHHHH
Q 041932 85 KGP-----------------GDCVYSGSTCKR-------------GEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKI 134 (348)
Q Consensus 85 k~~-----------------g~~v~aGt~~~~-------------g~~~~~V~~~G~~t~~~~i~~~~~~~~~~~~~~~~ 134 (348)
|.+ ...+|+||.+.+ |.+.+.|++||.+|..|++.|.+--+.++..
T Consensus 315 KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~VlrTGFeTSQGkLvRtilf~aervT---- 390 (1160)
T KOG0209|consen 315 KESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYVLRTGFETSQGKLVRTILFSAERVT---- 390 (1160)
T ss_pred ccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEEEeccccccCCceeeeEEecceeee----
Confidence 986 237999999863 5699999999999999999887665422221
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhc------hHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceee
Q 041932 135 LTAV-GKYCICSIALGLILEIIVMYAVQHR------EYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITK 207 (348)
Q Consensus 135 ~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk 207 (348)
+|.. +.+|+..+++++++.. +|.|... +-...+.-...++...+|.-||+-++++...+...++|.+++|.
T Consensus 391 aNn~Etf~FILFLlVFAiaAa--~Yvwv~Gskd~~RsrYKL~LeC~LIlTSVvPpELPmELSmAVNsSL~ALak~~vyCT 468 (1160)
T KOG0209|consen 391 ANNRETFIFILFLLVFAIAAA--GYVWVEGSKDPTRSRYKLFLECTLILTSVVPPELPMELSMAVNSSLIALAKLGVYCT 468 (1160)
T ss_pred eccHHHHHHHHHHHHHHHHhh--heEEEecccCcchhhhheeeeeeEEEeccCCCCCchhhhHHHHHHHHHHHHhceeec
Confidence 1111 1122222222222211 2222111 11122233345566778999999999999999999999999999
Q ss_pred chhHhhhhcCccEEEecccCccccCceEEEEeeeeeccC-------CCCHHHHHHHHHHH-----cCCCCCChHHHHHHh
Q 041932 208 RMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAK-------GVDVDTVVLMAARA-----SQLENLDVIDAAVVG 275 (348)
Q Consensus 208 ~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~~~~~~~~-------~~~~~~~l~~aa~~-----~~~~~~~pia~Ai~~ 275 (348)
.+-.+.-+|++|..|||||||||+..|.|..+.-..... ....+.++.+|.+. +..--.||+.+|.++
T Consensus 469 EPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~~~s~~p~~t~~vlAscHsLv~le~~lVGDPlEKA~l~ 548 (1160)
T KOG0209|consen 469 EPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALTPASKAPNETVLVLASCHSLVLLEDKLVGDPLEKATLE 548 (1160)
T ss_pred CccccccCCceeEEEecCCCccccccEEEEecccccCCcccccchhhCCchHHHHHHHHHHHHHhcCcccCChHHHHHHH
Confidence 999999999999999999999999999999864101110 11233455555432 222235899999999
Q ss_pred hhc
Q 041932 276 MLA 278 (348)
Q Consensus 276 ~~~ 278 (348)
+..
T Consensus 549 ~v~ 551 (1160)
T KOG0209|consen 549 AVG 551 (1160)
T ss_pred hcC
Confidence 874
No 33
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.6e-24 Score=208.14 Aligned_cols=228 Identities=25% Similarity=0.309 Sum_probs=173.4
Q ss_pred CceEEE-eCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEe-----cCccEEecccccCcCcceecCC-----------
Q 041932 25 PKAKVL-RDGKWKEEDAAILVPGDVISVKLGDIVPADARLLE-----GDPLTIDQSALTGESLTISKGP----------- 87 (348)
Q Consensus 25 ~~~~v~-r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~-----g~~l~vdes~lTGEs~pv~k~~----------- 87 (348)
.+.+++ |+|... .++++|++||+|++..+++||||.++++ |+| .+.+..|+||+.++.|-|
T Consensus 163 e~y~~ltr~~~~~-~~Ss~i~vGDvi~v~K~~RVPADmilLrTsd~sg~~-FiRTDQLDGETDWKLrl~vp~tQ~l~~~~ 240 (1051)
T KOG0210|consen 163 EKYTKLTRDGTRR-EPSSDIKVGDVIIVHKDERVPADMILLRTSDKSGSC-FIRTDQLDGETDWKLRLPVPRTQHLTEDS 240 (1051)
T ss_pred hhheeeccCCccc-ccccccccccEEEEecCCcCCcceEEEEccCCCCce-EEeccccCCcccceeeccchhhccCCccc
Confidence 444554 666444 3999999999999999999999999994 778 799999999998887754
Q ss_pred ------------------------------------CCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc---CCC
Q 041932 88 ------------------------------------GDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT---NHV 128 (348)
Q Consensus 88 ------------------------------------g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~---~~~ 128 (348)
.|.++++|++.+|.+.+.|++||.+|+. .++.+ .+-
T Consensus 241 el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~LsventLWanTVvAs~t~~gvVvYTG~dtRs-----vMNts~pr~Kv 315 (1051)
T KOG0210|consen 241 ELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSVENTLWANTVVASGTAIGVVVYTGRDTRS-----VMNTSRPRSKV 315 (1051)
T ss_pred chheEEEeccCcchhhHhhEEEEEEecCCCCCcccccceeeeeeeEecCcEEEEEEEecccHHH-----HhccCCccccc
Confidence 3689999999999999999999999985 33333 334
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhC----Cc
Q 041932 129 GHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQ----GV 204 (348)
Q Consensus 129 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~----gi 204 (348)
..++-.+|.+.+.+...+++..++ +...--.+..|...+.+++.++...+|.+|-..+.++...-++...+. |.
T Consensus 316 GllelEiN~ltKiL~~~vlvLs~v--mv~~~g~~~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i~~D~~Ipgt 393 (1051)
T KOG0210|consen 316 GLLELEINGLTKILFCFVLVLSIV--MVAMKGFGSDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGT 393 (1051)
T ss_pred ceeeeecccHHHHHHHHHHHHHHH--HHHhhcCCCchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCce
Confidence 455666777776644332222221 122223356788888999999999999999999988887777766543 68
Q ss_pred eeechhHhhhhcCccEEEecccCccccCceEEEEeeeeeccCC-CCHHHHHHHHHHHc
Q 041932 205 ITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAKG-VDVDTVVLMAARAS 261 (348)
Q Consensus 205 lvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~~~~~~~~~-~~~~~~l~~aa~~~ 261 (348)
.+|....-|.||++.++..|||||||+|+|.+++++....+.+ .+-+++-...+++.
T Consensus 394 vvRSstIPEeLGRIsylLtDKTGTLTqNEM~~KKiHLGTv~~s~e~~~eV~~~i~s~~ 451 (1051)
T KOG0210|consen 394 VVRSSTIPEELGRISYLLTDKTGTLTQNEMEFKKIHLGTVAYSAETMDEVSQHIQSLY 451 (1051)
T ss_pred eeecCCChHHhcceEEEEecCcCccccchheeeeeeeeeeeccHhHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999986554322 23345555444443
No 34
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=99.85 E-value=5.2e-21 Score=200.70 Aligned_cols=239 Identities=19% Similarity=0.200 Sum_probs=176.1
Q ss_pred hhHHHHHHhHHHHHHHHHhcCCCceEEEeCCe-EEEEECCCCCCCcEEEEcCCCEEeeeEEEEe-----cCccEEecccc
Q 041932 3 TVCFIQENNAGAASTALMAHLAPKAKVLRDGK-WKEEDAAILVPGDVISVKLGDIVPADARLLE-----GDPLTIDQSAL 76 (348)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~-~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~-----g~~l~vdes~l 76 (348)
+-+.+|.+|.++...++. ..+++|.+++. +++..|++|++||+|.+..+|.+|||.++++ |.| +|++++|
T Consensus 96 iKd~~eD~rR~~~D~~iN---~~~~~v~~~~~~~~~~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~c-yveT~nL 171 (1151)
T KOG0206|consen 96 IKDAIEDYRRHKQDKEVN---NRKVEVLRGDGCFVEKKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGIC-YVETANL 171 (1151)
T ss_pred HHHHHhhhhhhhccHHhh---cceeEEecCCceeeeeccceeeeeeEEEeccCCccccceEEecCCCCCcee-EEEEeec
Confidence 446788888888887665 37788888644 8999999999999999999999999999995 458 8999999
Q ss_pred cCcCcceecCC-----------------------------------------------CCeeeeeeeEecc-eEEEEEEE
Q 041932 77 TGESLTISKGP-----------------------------------------------GDCVYSGSTCKRG-EIQAVVIA 108 (348)
Q Consensus 77 TGEs~pv~k~~-----------------------------------------------g~~v~aGt~~~~g-~~~~~V~~ 108 (348)
+||+..+.|+. .+.++.|+.+.+. .+.+.|+.
T Consensus 172 DGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~vv~ 251 (1151)
T KOG0206|consen 172 DGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGVVVF 251 (1151)
T ss_pred CCccccceeeehhhhhcccccccccccCCceEEcCCcccHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEEEEE
Confidence 99998877653 1356778888764 58999999
Q ss_pred ecchhHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-----------hhch-----HHHHHh
Q 041932 109 TGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIV--MYAV-----------QHRE-----YRTGLD 170 (348)
Q Consensus 109 ~G~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~-----------~~~~-----~~~~l~ 170 (348)
+|++|++.+.... ...+++++++..++....+++..+..+++..+. +|.. ...+ ....+.
T Consensus 252 tG~dtK~~~n~~~--~~~Krs~ier~~n~~i~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 329 (1151)
T KOG0206|consen 252 TGHDTKLMQNSGK--PPSKRSRIERKMNKIIILLFVLLILMCLISAIGFAIWTRQDGRHNGEWWYLSPSEAAYAGFVHFL 329 (1151)
T ss_pred cCCcchHHHhcCC--CccccchhhhhhhhhHHHHHHHHHHHHHHHHhhhheeeeecccccCchhhhcCchHHHHHHHHHH
Confidence 9999998664333 337788999999988765444333333222221 1111 1111 122344
Q ss_pred hhhhhhhcccccchhHHHHHHHHHHHHHH------H----hCCceeechhHhhhhcCccEEEecccCccccCceEEEEee
Q 041932 171 NLLVPLIGGVPIALPTVLSVIMAIGSQQL------S----LQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNL 240 (348)
Q Consensus 171 ~~~~~li~~~P~al~~~~~~~~~~~~~~l------~----k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~~ 240 (348)
.++.++...+|.+|...+.+.-...+... . .....+|..+.-|.||++++|++|||||||+|.|++.++.
T Consensus 330 t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~my~~e~d~~~~~rtsnl~eeLGqv~yIfSDKTGTLT~N~M~F~kCs 409 (1151)
T KOG0206|consen 330 TFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDMYDEETDTPAQARTSNLNEELGQVEYIFSDKTGTLTQNSMEFKKCS 409 (1151)
T ss_pred HHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHhhhccCCCccccccCCchhhhcceeEEEEcCcCccccceeeeeccc
Confidence 55677778899999887766555544222 1 3467899999999999999999999999999999999988
Q ss_pred eeeccCC
Q 041932 241 IEIFAKG 247 (348)
Q Consensus 241 ~~~~~~~ 247 (348)
+...++|
T Consensus 410 i~g~~yg 416 (1151)
T KOG0206|consen 410 INGTSYG 416 (1151)
T ss_pred ccCcccc
Confidence 6554443
No 35
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.34 E-value=5.9e-07 Score=79.28 Aligned_cols=52 Identities=33% Similarity=0.456 Sum_probs=44.1
Q ss_pred ccEEEecccCccccCceEEEEeeeeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcC
Q 041932 218 MDVLCCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLAD 279 (348)
Q Consensus 218 vd~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~ 279 (348)
++++|||||||||++++.+ . . .+...++.++...++.+. ||++.++..++..
T Consensus 1 i~~i~fDktGTLt~~~~~v---~--~----~~~~~~~~~~~~~~~~s~-~p~~~~~~~~~~~ 52 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV---A--P----PSNEAALAIAAALEQGSE-HPIGKAIVEFAKN 52 (215)
T ss_dssp ESEEEEECCTTTBESHHEE---E--S----CSHHHHHHHHHHHHCTST-SHHHHHHHHHHHH
T ss_pred CeEEEEecCCCcccCeEEE---E--e----ccHHHHHHHHHHhhhcCC-Ccchhhhhhhhhh
Confidence 5899999999999999999 1 1 567888999988888876 7999999987754
No 36
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.24 E-value=2.4 Score=43.65 Aligned_cols=38 Identities=29% Similarity=0.457 Sum_probs=34.2
Q ss_pred EEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEec
Q 041932 29 VLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEG 66 (348)
Q Consensus 29 v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g 66 (348)
.+|||+..++|..-|+.||||-++||+.-||.+.=.++
T Consensus 160 afRDGhlm~lP~~LLVeGDiIa~RPGQeafan~~g~~d 197 (1354)
T KOG4383|consen 160 AFRDGHLMELPRILLVEGDIIAFRPGQEAFANCEGFDD 197 (1354)
T ss_pred HhccCeeeecceeEEEeccEEEecCCccccccccccCC
Confidence 47999999999999999999999999999998766554
No 37
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=70.58 E-value=57 Score=32.76 Aligned_cols=147 Identities=17% Similarity=0.156 Sum_probs=86.8
Q ss_pred CCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcceecCCCCeeeeeeeEecceE---------
Q 041932 32 DGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEI--------- 102 (348)
Q Consensus 32 ~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~--------- 102 (348)
-|....+...+..|-|.+.+.- ..-+|--.+.|++.-+.-. .|+. ...|..++.|+....-..
T Consensus 54 ~GDiv~v~~G~~iP~Dg~vl~g--~~~vdes~LTGEs~pv~k~--~g~~----v~~gs~~~~G~~~~~v~~~~~~s~~~~ 125 (499)
T TIGR01494 54 PGDIVLVKSGEIVPADGVLLSG--SCFVDESNLTGESVPVLKT--AGDA----VFAGTYVFNGTLIVVVSATGPNTFGGK 125 (499)
T ss_pred CCCEEEECCCCEeeeeEEEEEc--cEEEEcccccCCCCCeeec--cCCc----cccCcEEeccEEEEEEEEeccccHHHH
Confidence 4677888899999999998865 4556777777887433332 2442 357888999987653221
Q ss_pred EEEEEEecchhHHHHHHhcccccCCCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---hhchHHHHHhhhhhhhhc
Q 041932 103 QAVVIATGVHTFLGRAVHLVDTTNHVGHFQKIL-TAVGKYCICSIALGLILEIIVMYAV---QHREYRTGLDNLLVPLIG 178 (348)
Q Consensus 103 ~~~V~~~G~~t~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~li~ 178 (348)
.+.+.++|.++ .+.-.....++. ..+..+.+.+.++.++ .++..++. ....+..++..++..+.+
T Consensus 126 i~~~v~~~~~~----------k~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~~~~~~~~~~~~~~~~vl~~~~P~ 194 (499)
T TIGR01494 126 IAVVVYTGFET----------KTPLQPKLDRLSDIIFILFVLLIALAVFL-FWAIGLWDPNSIFKIFLRALILLVIAIPI 194 (499)
T ss_pred HHHHHHhcCCC----------CCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcccccHHHHHHHHHHHHHHhcCC
Confidence 22233444433 121123444555 4554443333222222 23332221 234556777788888999
Q ss_pred ccccchhHHHHHHHHHHHH
Q 041932 179 GVPIALPTVLSVIMAIGSQ 197 (348)
Q Consensus 179 ~~P~al~~~~~~~~~~~~~ 197 (348)
++|.++|++...+.....+
T Consensus 195 aL~~~~~~~~~~~~~~~~~ 213 (499)
T TIGR01494 195 ALPLAVTIALAVGDARLAK 213 (499)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999999998887665543
No 38
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=65.15 E-value=18 Score=25.95 Aligned_cols=33 Identities=24% Similarity=0.119 Sum_probs=24.6
Q ss_pred CCceEEEeCCeEEEEEC---CCCCCCcEEEEcCCCE
Q 041932 24 APKAKVLRDGKWKEEDA---AILVPGDVISVKLGDI 56 (348)
Q Consensus 24 ~~~~~v~r~g~~~~i~~---~~l~~GDii~v~~Ge~ 56 (348)
...++|-.+|..++++. .++.+||.|++..|--
T Consensus 16 ~~~A~v~~~G~~~~V~~~lv~~v~~Gd~VLVHaG~A 51 (68)
T PF01455_consen 16 GGMAVVDFGGVRREVSLALVPDVKVGDYVLVHAGFA 51 (68)
T ss_dssp TTEEEEEETTEEEEEEGTTCTSB-TT-EEEEETTEE
T ss_pred CCEEEEEcCCcEEEEEEEEeCCCCCCCEEEEecChh
Confidence 45677888899998864 5688999999999843
No 39
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=62.20 E-value=4 Score=34.74 Aligned_cols=13 Identities=38% Similarity=0.368 Sum_probs=12.4
Q ss_pred EEecccCccccCc
Q 041932 221 LCCDKTGTLTLNK 233 (348)
Q Consensus 221 i~fDKTGTLT~~~ 233 (348)
+|||.+||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6999999999998
No 40
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=60.80 E-value=4.7 Score=30.10 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=15.5
Q ss_pred CCCCCCCcEEEE-cCCCEEee
Q 041932 40 AAILVPGDVISV-KLGDIVPA 59 (348)
Q Consensus 40 ~~~l~~GDii~v-~~Ge~iPa 59 (348)
-.+|.+||.|.+ +.||.||-
T Consensus 47 ~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 47 ELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HTT-BBT-EEEEEEETTTEEE
T ss_pred HcCCCCCCEEEEEECCCccce
Confidence 478999999998 58999994
No 41
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=58.05 E-value=18 Score=37.54 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=23.3
Q ss_pred CCCCCCCcEEEEc-CCCEEe-eeEEEEecC
Q 041932 40 AAILVPGDVISVK-LGDIVP-ADARLLEGD 67 (348)
Q Consensus 40 ~~~l~~GDii~v~-~Ge~iP-aDg~vl~g~ 67 (348)
-.+|.+||.|.|+ +||+|| +++++.+-.
T Consensus 365 rkdIrIGDtV~V~kAGdVIP~V~~Vv~e~R 394 (667)
T COG0272 365 RKDIRIGDTVVVRKAGDVIPQVVGVVLEKR 394 (667)
T ss_pred hcCCCCCCEEEEEecCCCCcceeeeecccC
Confidence 4899999999995 899999 777777643
No 42
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=56.86 E-value=2.7 Score=46.36 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=40.4
Q ss_pred cccCCCchhhhhhccceecccccc-cC------cccccCCCCCCcccCCcHHHHHHhcCccccccC
Q 041932 290 SSLSGDQLAIAKETGRRLGMGTNM-YP------SSALLGQDRDDSIVALPVDELIEKADGFAGVFP 348 (348)
Q Consensus 290 ~~i~G~g~~~a~~~~~~~~ig~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~p 348 (348)
.|+|||...+|...++++++...- .. ......+.++..+.+.++.+.++.+.+||++.|
T Consensus 666 ~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V~ar~sP 731 (1053)
T TIGR01523 666 HMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLVIARCAP 731 (1053)
T ss_pred EEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeEEEecCH
Confidence 899999999999999999995321 00 001111122223445678888999999999988
No 43
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=55.54 E-value=28 Score=37.14 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=16.9
Q ss_pred CcEEEEcCCCEEeeeEEEEe-cCccEEecccccCc
Q 041932 46 GDVISVKLGDIVPADARLLE-GDPLTIDQSALTGE 79 (348)
Q Consensus 46 GDii~v~~Ge~iPaDg~vl~-g~~l~vdes~lTGE 79 (348)
|....+...|.+|-|.++++ |+-+-+|--.+.|+
T Consensus 100 g~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~g~ 134 (755)
T TIGR01647 100 GKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGD 134 (755)
T ss_pred CEEEEEEhhhCcCCCEEEECCCCEEeceEEEEecC
Confidence 44555555666666666553 33323344444444
No 44
>PRK11507 ribosome-associated protein; Provisional
Probab=53.52 E-value=19 Score=25.98 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.1
Q ss_pred eEEEeCCeEEEEECCCCCCCcEEEEcC
Q 041932 27 AKVLRDGKWKEEDAAILVPGDVISVKL 53 (348)
Q Consensus 27 ~~v~r~g~~~~i~~~~l~~GDii~v~~ 53 (348)
-.|..||+.+...-+.|.+||+|.+..
T Consensus 37 g~V~VNGeve~rRgkKl~~GD~V~~~g 63 (70)
T PRK11507 37 GQVKVDGAVETRKRCKIVAGQTVSFAG 63 (70)
T ss_pred CceEECCEEecccCCCCCCCCEEEECC
Confidence 357789999999999999999998853
No 45
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=50.78 E-value=21 Score=27.68 Aligned_cols=38 Identities=16% Similarity=0.384 Sum_probs=27.4
Q ss_pred CceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEE
Q 041932 25 PKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLL 64 (348)
Q Consensus 25 ~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl 64 (348)
..=+|.-||+.. -++.++++||+|.|.-|... ..-.|+
T Consensus 32 ~~GrV~vNG~~a-KpS~~VK~GD~l~i~~~~~~-~~v~Vl 69 (100)
T COG1188 32 EGGRVKVNGQRA-KPSKEVKVGDILTIRFGNKE-FTVKVL 69 (100)
T ss_pred HCCeEEECCEEc-ccccccCCCCEEEEEeCCcE-EEEEEE
Confidence 334566677666 78999999999999988765 233444
No 46
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=49.51 E-value=18 Score=27.03 Aligned_cols=25 Identities=36% Similarity=0.272 Sum_probs=19.1
Q ss_pred EEEeCCeEEEEECCCCCCCcEEEEc
Q 041932 28 KVLRDGKWKEEDAAILVPGDVISVK 52 (348)
Q Consensus 28 ~v~r~g~~~~i~~~~l~~GDii~v~ 52 (348)
.+.++++.+++.+++|++||.|.+.
T Consensus 75 ~~~~~~~~~w~~a~~l~~gd~v~~~ 99 (100)
T smart00306 75 LVRDGGKLVWVFASELKPGDYVLVP 99 (100)
T ss_pred EEecCCcEEEEEHHHCCCCCEEEec
Confidence 3445556678999999999999764
No 47
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=48.28 E-value=10 Score=26.91 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=15.0
Q ss_pred EEeCCeEEEEECCCCCCCcEEEEcCCCE
Q 041932 29 VLRDGKWKEEDAAILVPGDVISVKLGDI 56 (348)
Q Consensus 29 v~r~g~~~~i~~~~l~~GDii~v~~Ge~ 56 (348)
|..||+.+.-.-..|.+||+|.+ .|+.
T Consensus 35 V~VNGe~e~rrg~Kl~~GD~V~~-~~~~ 61 (65)
T PF13275_consen 35 VKVNGEVETRRGKKLRPGDVVEI-DGEE 61 (65)
T ss_dssp HEETTB----SS----SSEEEEE-TTEE
T ss_pred eEECCEEccccCCcCCCCCEEEE-CCEE
Confidence 66789988889999999999999 4443
No 48
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=47.30 E-value=1.2e+02 Score=32.22 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=85.7
Q ss_pred EeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcceecCCCCeeeeeeeEecceEEEEEEEe
Q 041932 30 LRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIAT 109 (348)
Q Consensus 30 ~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~V~~~ 109 (348)
++-|....+..-+..|-|-+.+.. + .-+|--.+.|+++-|+-. .|+. ...|..+..|+....=.-.+.-+..
T Consensus 261 l~~GDiv~v~~G~~IP~Dg~vi~g-~-~~vdes~lTGEs~Pv~k~--~Gd~----V~aGt~~~~G~~~i~V~~~g~~s~l 332 (741)
T PRK11033 261 LRPGDVIEVAAGGRLPADGKLLSP-F-ASFDESALTGESIPVERA--TGEK----VPAGATSVDRLVTLEVLSEPGASAI 332 (741)
T ss_pred CCCCCEEEECCCCEEecceEEEEC-c-EEeecccccCCCCCEecC--CCCe----eccCCEEcCceEEEEEEeccccCHH
Confidence 345677888888888888887764 3 356888888887433322 2332 3457777777665432212222222
Q ss_pred cchhHHHHHH-hcccc-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHH
Q 041932 110 GVHTFLGRAV-HLVDT-TNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTV 187 (348)
Q Consensus 110 G~~t~~~~i~-~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~ 187 (348)
| ++.++. +.... +.-....+++...+....+.+.++.+++.+++........+..++...+..+.++...+.|++
T Consensus 333 ~---~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~~~~~~~~i~~a~svlviacPcaL~latP~a 409 (741)
T PRK11033 333 D---RILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLFAAPWQEWIYRGLTLLLIGCPCALVISTPAA 409 (741)
T ss_pred H---HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHhchhhhhhhhHHH
Confidence 2 222222 22222 222344677777776654433333333221221111112233456666777788888888888
Q ss_pred HHHHHHHHHHH
Q 041932 188 LSVIMAIGSQQ 198 (348)
Q Consensus 188 ~~~~~~~~~~~ 198 (348)
+..++..+.++
T Consensus 410 ~~~~l~~aar~ 420 (741)
T PRK11033 410 ITSGLAAAARR 420 (741)
T ss_pred HHHHHHHHHHC
Confidence 88887776655
No 49
>PF15584 Imm44: Immunity protein 44
Probab=47.02 E-value=8.8 Score=29.10 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCEEeeeEEEE
Q 041932 45 PGDVISVKLGDIVPADARLL 64 (348)
Q Consensus 45 ~GDii~v~~Ge~iPaDg~vl 64 (348)
+.+-..|+.|+.|||||+--
T Consensus 13 ~~~~~~I~SG~~iP~~GIwE 32 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIWE 32 (94)
T ss_pred CCCCCEEecCCCcccCCeEc
Confidence 34556789999999999864
No 50
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=44.48 E-value=1.9e+02 Score=31.78 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=84.4
Q ss_pred CCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcceecCCCCeeeeeeeEecceEEEEEEEecc
Q 041932 32 DGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGV 111 (348)
Q Consensus 32 ~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~ 111 (348)
-|....+...+.+|-|.+.++ |...-+|=-.+.|++.-++-. .|+.. .-..|..+..|+...-=...+.=+..|.
T Consensus 186 ~GDiV~l~~Gd~IPaD~~li~-g~~l~VdES~LTGES~pv~K~--~~~~n--~v~~GT~v~~G~~~~iV~~tG~~T~~gk 260 (941)
T TIGR01517 186 VGDIVSLSTGDVVPADGVFIS-GLSLEIDESSITGESDPIKKG--APKDS--FLLSGTVVNEGSGRMLVTAVGVNSFGGK 260 (941)
T ss_pred CCCEEEECCCCEecccEEEEE-cCcEEEEecccCCCCCccccc--CCCCc--eEEeCCeEEeeEEEEEEEEeCCCcHHHH
Confidence 467788889999999999885 444557777777876433322 12221 2356888888864432222233333332
Q ss_pred hhHHHHHHhcc-cccCCCChHHHHHHHHHHHHHHHHHHHH---HHHHHHH------------HHHhhchHHHHHhhhhhh
Q 041932 112 HTFLGRAVHLV-DTTNHVGHFQKILTAVGKYCICSIALGL---ILEIIVM------------YAVQHREYRTGLDNLLVP 175 (348)
Q Consensus 112 ~t~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~------------~~~~~~~~~~~l~~~~~~ 175 (348)
=.. ..... ..+.-...+.++.+.+..+.+...++.+ ++.+++. .......+..++..+++.
T Consensus 261 i~~---~~~~~~~~t~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~ 337 (941)
T TIGR01517 261 LMM---ELRAEGEDTPLQEKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVA 337 (941)
T ss_pred HHH---hhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhh
Confidence 211 21111 2222234455666666544322111111 1111110 111123455667777888
Q ss_pred hhcccccchhHHHHHHHHHHHH
Q 041932 176 LIGGVPIALPTVLSVIMAIGSQ 197 (348)
Q Consensus 176 li~~~P~al~~~~~~~~~~~~~ 197 (348)
+..+.|.++++++..+.....+
T Consensus 338 iP~~Lp~~vti~l~~~~~~mak 359 (941)
T TIGR01517 338 VPEGLPLAVTIALAYSMKKMMK 359 (941)
T ss_pred CCCchHHHHHHHHHHHHHHHHh
Confidence 8899999999988887655443
No 51
>PRK04980 hypothetical protein; Provisional
Probab=42.49 E-value=93 Score=24.24 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=38.2
Q ss_pred CCceEEEeCCeEEEEECCCCCCCcEEEEc--CCCEEeeeEEEEecCccEEe-----cccccCcCcceecC
Q 041932 24 APKAKVLRDGKWKEEDAAILVPGDVISVK--LGDIVPADARLLEGDPLTID-----QSALTGESLTISKG 86 (348)
Q Consensus 24 ~~~~~v~r~g~~~~i~~~~l~~GDii~v~--~Ge~iPaDg~vl~g~~l~vd-----es~lTGEs~pv~k~ 86 (348)
..|..-+||+. ....+|||++.|. .+++.-|+..+++-....+| .+..-|+|.+..|.
T Consensus 18 GkKTiTiRd~s-----e~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i~f~eLte~hA~qEg~sL~elk~ 82 (102)
T PRK04980 18 GRKTITIRDES-----ESHFKPGDVLRVGTFEDDRYFCTIEVLSVSPVTFDELNEKHAEQENMTLPELKQ 82 (102)
T ss_pred CCceEEeeCCc-----ccCCCCCCEEEEEECCCCcEEEEEEEEEEEEEehhhCCHHHHHHhCCCHHHHHH
Confidence 34444566642 4679999999996 77888899999975532222 24455666665554
No 52
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=39.34 E-value=38 Score=27.38 Aligned_cols=55 Identities=27% Similarity=0.443 Sum_probs=38.7
Q ss_pred CCcEEEEcCCC---EEeeeEEEEe----cCc--------------cEEecccccCcCcceecCCCCeeeeeeeEec
Q 041932 45 PGDVISVKLGD---IVPADARLLE----GDP--------------LTIDQSALTGESLTISKGPGDCVYSGSTCKR 99 (348)
Q Consensus 45 ~GDii~v~~Ge---~iPaDg~vl~----g~~--------------l~vdes~lTGEs~pv~k~~g~~v~aGt~~~~ 99 (348)
.||=+-+.|-+ .-|+||++.. +++ +-+|+..|.||..-...+.||.|-+|+.+..
T Consensus 25 lG~GvaI~P~~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGidTv~l~g~gF~~~vk~Gd~V~~G~~l~~ 100 (124)
T cd00210 25 MGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGEGFTSHVEEGQRVKQGDKLLE 100 (124)
T ss_pred ccceEEEEccCCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeeeeecCCCceEEEecCCCEEcCCCEEEE
Confidence 34444444422 4589999873 111 2478999999999888899999999988753
No 53
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=38.16 E-value=73 Score=23.36 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=22.2
Q ss_pred ceEEEeCCeEEEEE---CCCCCCCcEEEEcCCC
Q 041932 26 KAKVLRDGKWKEED---AAILVPGDVISVKLGD 55 (348)
Q Consensus 26 ~~~v~r~g~~~~i~---~~~l~~GDii~v~~Ge 55 (348)
.++|-.+|..++++ ..++.|||.|++..|-
T Consensus 16 ~A~v~~~G~~~~v~l~lv~~~~vGD~VLVH~G~ 48 (76)
T TIGR00074 16 IALVEFCGIKRDVSLDLVGEVKVGDYVLVHVGF 48 (76)
T ss_pred EEEEEcCCeEEEEEEEeeCCCCCCCEEEEecCh
Confidence 45666667766665 4688999999999884
No 54
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=37.82 E-value=30 Score=28.03 Aligned_cols=29 Identities=21% Similarity=0.026 Sum_probs=17.8
Q ss_pred EEEEECCCCCCCcEEEEcCCCEEeeeEEE
Q 041932 35 WKEEDAAILVPGDVISVKLGDIVPADARL 63 (348)
Q Consensus 35 ~~~i~~~~l~~GDii~v~~Ge~iPaDg~v 63 (348)
..++++++|++||.+.-..|+...+..+-
T Consensus 69 ~gWv~A~~L~~GD~L~~~~G~~~~v~~i~ 97 (130)
T PF07591_consen 69 KGWVEAEDLKVGDRLLTADGSWVTVTSIR 97 (130)
T ss_dssp ---EEGGG--TTSEEEEE-SSEEEEE---
T ss_pred HhhhhHhhCCCCCEEEcCCCCEEEEEEEE
Confidence 35799999999999999899887666553
No 55
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=35.47 E-value=1.3e+02 Score=26.30 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=33.8
Q ss_pred HHHHHHhHHHHHHHHHhcCCCceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEec
Q 041932 5 CFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEG 66 (348)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g 66 (348)
.+++.+...++.+.+.++...... +...+ +.-|....+...|.+|-|.+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v----~r~~~~~~i~~~~L~~GDiI~l~~ 62 (230)
T PF00122_consen 10 NIIEIWQEYRSKKQLKKLNNLNPQ-----KKVTV----IRDGRWQKIPSSELVPGDIIILKA 62 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSS-----EEEEE----EETTEEEEEEGGGT-TTSEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC-----ccEEE----EeccccccchHhhccceeeeeccc
Confidence 455666667777777765443332 11222 333788899999999999998863
No 56
>PRK08433 flagellar motor switch protein; Validated
Probab=33.08 E-value=35 Score=27.00 Aligned_cols=25 Identities=8% Similarity=0.227 Sum_probs=17.0
Q ss_pred EEECCCCCCCcEEEEcCCCEEeeeE
Q 041932 37 EEDAAILVPGDVISVKLGDIVPADA 61 (348)
Q Consensus 37 ~i~~~~l~~GDii~v~~Ge~iPaDg 61 (348)
.+.-.++...|++.+++||+||.|-
T Consensus 39 ~LG~t~itl~dlL~Lq~GDVI~Ld~ 63 (111)
T PRK08433 39 ELGTTQISLLEILKFEKGSVIDLEK 63 (111)
T ss_pred EEecccccHHHHhCCCCCCEEEeCC
Confidence 3445666677777777777777763
No 57
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=32.32 E-value=1e+02 Score=24.75 Aligned_cols=54 Identities=26% Similarity=0.392 Sum_probs=37.9
Q ss_pred CcEEEEcCCC---EEeeeEEEEe----cC--------------ccEEecccccCcCcceecCCCCeeeeeeeEec
Q 041932 46 GDVISVKLGD---IVPADARLLE----GD--------------PLTIDQSALTGESLTISKGPGDCVYSGSTCKR 99 (348)
Q Consensus 46 GDii~v~~Ge---~iPaDg~vl~----g~--------------~l~vdes~lTGEs~pv~k~~g~~v~aGt~~~~ 99 (348)
||=+-+.|.+ .-|+||++.. ++ -+-+|+..|.||..-...+.|+.|-+|..+.+
T Consensus 26 G~G~aI~P~~~~v~AP~~G~v~~v~~T~HA~gi~~~~G~evLiHiGidTV~L~G~gF~~~v~~Gd~V~~G~~l~~ 100 (121)
T TIGR00830 26 GDGFAILPTDGKVVAPVDGKIGKIFPTKHAFGIESDSGVEILIHIGIDTVKLNGEGFTSHVEEGQRVKKGDPLLE 100 (121)
T ss_pred cceEEEEcCCCeEEccCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeceeecCCCceEEEecCCCEEcCCCEEEE
Confidence 4444444322 5689999873 11 12479999999998888899999988887753
No 58
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=32.13 E-value=33 Score=29.01 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.8
Q ss_pred hhhhcCccEEEecccCccccCceEEEE
Q 041932 212 IVHMAGMDVLCCDKTGTLTLNKLTVDK 238 (348)
Q Consensus 212 le~l~~vd~i~fDKTGTLT~~~~~v~~ 238 (348)
.+++.++..+++|=-||||.|++.+..
T Consensus 2 ~~ra~~IkLli~DVDGvLTDG~ly~~~ 28 (170)
T COG1778 2 IARAKNIKLLILDVDGVLTDGKLYYDE 28 (170)
T ss_pred hhhhhhceEEEEeccceeecCeEEEcC
Confidence 467888999999999999999998774
No 59
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=31.95 E-value=80 Score=23.51 Aligned_cols=30 Identities=23% Similarity=0.158 Sum_probs=22.4
Q ss_pred ceEEEeCCeEEEEECC-------CCCCCcEEEEcCCC
Q 041932 26 KAKVLRDGKWKEEDAA-------ILVPGDVISVKLGD 55 (348)
Q Consensus 26 ~~~v~r~g~~~~i~~~-------~l~~GDii~v~~Ge 55 (348)
.++|-.+|..++|+.. ++.+||-|++..|-
T Consensus 19 ~A~vd~~Gv~r~V~l~Lv~~~~~~~~vGDyVLVHaGf 55 (82)
T PRK10413 19 LAQVEVCGIKRDVNIALICEGNPADLLGQWVLVHVGF 55 (82)
T ss_pred EEEEEcCCeEEEEEeeeeccCCcccccCCEEEEecch
Confidence 4677777877777633 45689999999884
No 60
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=31.75 E-value=33 Score=23.29 Aligned_cols=12 Identities=42% Similarity=0.648 Sum_probs=10.4
Q ss_pred CCCcEEEEcCCC
Q 041932 44 VPGDVISVKLGD 55 (348)
Q Consensus 44 ~~GDii~v~~Ge 55 (348)
.+||+|.++.|-
T Consensus 2 ~~GDvV~LKSGG 13 (53)
T PF09926_consen 2 KIGDVVQLKSGG 13 (53)
T ss_pred CCCCEEEEccCC
Confidence 689999999884
No 61
>PRK10671 copA copper exporting ATPase; Provisional
Probab=31.47 E-value=4.2e+02 Score=28.68 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=86.7
Q ss_pred eCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcceecCCCCeeeeeeeEecceEEEEEEEec
Q 041932 31 RDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATG 110 (348)
Q Consensus 31 r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G 110 (348)
+-|....+..-+..|-|-+.++ |+ .-+|=-.+.|++.-|+-. .|. ....|..+..|+....=...+.=+..|
T Consensus 342 ~~GD~v~v~~G~~iP~Dg~v~~-g~-~~vdeS~lTGEs~pv~k~--~gd----~V~aGt~~~~G~~~~~v~~~g~~t~l~ 413 (834)
T PRK10671 342 QPGMLLRLTTGDRVPVDGEITQ-GE-AWLDEAMLTGEPIPQQKG--EGD----SVHAGTVVQDGSVLFRASAVGSHTTLS 413 (834)
T ss_pred CCCCEEEEcCCCEeeeeEEEEE-ce-EEEeehhhcCCCCCEecC--CCC----EEEecceecceeEEEEEEEEcCcChHH
Confidence 4567778888888888888886 43 456777777776433322 132 234677777777665433333333333
Q ss_pred chhHHHHHHhccc-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhchHHHHHhhhhhhhhcccccchhHH
Q 041932 111 VHTFLGRAVHLVD-TTNHVGHFQKILTAVGKYCICSIALGLILEIIVM--YAVQHREYRTGLDNLLVPLIGGVPIALPTV 187 (348)
Q Consensus 111 ~~t~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~li~~~P~al~~~ 187 (348)
.=..+ +.+... .+.-....+++...+....+.+.++ ..+.+++. +......+..++...+.-+.++.+.+.|++
T Consensus 414 ~i~~l--v~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~-~~~~~~~~~~~~~~~~~~~~a~~vlv~acPcaL~la~p~a 490 (834)
T PRK10671 414 RIIRM--VRQAQSSKPEIGQLADKISAVFVPVVVVIALV-SAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMS 490 (834)
T ss_pred HHHHH--HHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCchHHHHHHHHHHHHHHHhcccchhhhHHHH
Confidence 22221 111122 2222234456666666554333222 22223321 111122345667777788899999999999
Q ss_pred HHHHHHHHHHH
Q 041932 188 LSVIMAIGSQQ 198 (348)
Q Consensus 188 ~~~~~~~~~~~ 198 (348)
+..+...+.++
T Consensus 491 ~~~~~~~~a~~ 501 (834)
T PRK10671 491 IISGVGRAAEF 501 (834)
T ss_pred HHHHHHHHHHC
Confidence 98888776644
No 62
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=31.06 E-value=3.5e+02 Score=30.00 Aligned_cols=186 Identities=10% Similarity=0.026 Sum_probs=97.2
Q ss_pred HHHHHHhHHHHHHHHHhcC-----CCc-eEE----EeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecc
Q 041932 5 CFIQENNAGAASTALMAHL-----APK-AKV----LRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQS 74 (348)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~~-----~~~-~~v----~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes 74 (348)
.-+..+++-+++.++.... ..+ ..+ +.-|....+...+..|.|.++++... +-+|=-.+.|++.-+.-.
T Consensus 124 qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~~~-l~VdeS~LTGES~pv~K~ 202 (997)
T TIGR01106 124 QEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQG-CKVDNSSLTGESEPQTRS 202 (997)
T ss_pred HHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEccC-cEEEccccCCCCCceecc
Confidence 3455666666666653221 111 112 23467788889999999999887643 446777777776433322
Q ss_pred cccCcCcce----ecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhcccc-cCCCChHHHHHHHHHHHHHHHHHHH
Q 041932 75 ALTGESLTI----SKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDT-TNHVGHFQKILTAVGKYCICSIALG 149 (348)
Q Consensus 75 ~lTGEs~pv----~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~ 149 (348)
.-.-+..|. .--.|..+..|+...-=...+.=+..|.-..+- ...-.. ..-...++++.+.+..+.++..++.
T Consensus 203 ~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~--~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~ 280 (997)
T TIGR01106 203 PEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLA--SGLENGKTPIAIEIEHFIHIITGVAVFLGVSF 280 (997)
T ss_pred CCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhh--hhcccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111011121 123577888886432222233344445433321 111121 2223456777887776644433333
Q ss_pred HHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHH
Q 041932 150 LILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAI 194 (348)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~ 194 (348)
+++..+..+.+ ...+..++..+++.+..++|.++++++..+...
T Consensus 281 ~~~~~~~~~~~-~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~ 324 (997)
T TIGR01106 281 FILSLILGYTW-LEAVIFLIGIIVANVPEGLLATVTVCLTLTAKR 324 (997)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence 33322221111 223445566667778889999998888776543
No 63
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=29.38 E-value=61 Score=25.69 Aligned_cols=26 Identities=42% Similarity=0.401 Sum_probs=21.0
Q ss_pred eEEEeCCeEEEEECCCCCCCcEEEEc
Q 041932 27 AKVLRDGKWKEEDAAILVPGDVISVK 52 (348)
Q Consensus 27 ~~v~r~g~~~~i~~~~l~~GDii~v~ 52 (348)
..+.+++++.++++++|++||.+.+.
T Consensus 74 ~~~~~~~~~~~~~a~~l~~gd~l~~~ 99 (136)
T cd00081 74 LFVLEDGELKWVFASDLKPGDYVLVP 99 (136)
T ss_pred EEEEeCCeEEEEEHHHCCCCCEEEEc
Confidence 34445556788999999999999997
No 64
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=28.21 E-value=98 Score=26.02 Aligned_cols=60 Identities=25% Similarity=0.361 Sum_probs=30.6
Q ss_pred CCCCCCCcEEEEcCCCEEe--eeEEEEecCccEEecccccCcCcceecCC-CCeeeeeeeEecceEE
Q 041932 40 AAILVPGDVISVKLGDIVP--ADARLLEGDPLTIDQSALTGESLTISKGP-GDCVYSGSTCKRGEIQ 103 (348)
Q Consensus 40 ~~~l~~GDii~v~~Ge~iP--aDg~vl~g~~l~vdes~lTGEs~pv~k~~-g~~v~aGt~~~~g~~~ 103 (348)
...+.+|.-++|..|..+| +|++|-.-.+ .+.+..++=. ....+ .|+-..|+-+..|+..
T Consensus 81 ~~~l~~g~av~I~TGa~vP~g~DaVV~~E~~-~~~~~~i~i~---~~~~~g~nIr~~G~di~~G~~l 143 (162)
T PF03453_consen 81 PIPLQPGEAVRIMTGAPVPEGADAVVPIEDT-EVEGDEIRIL---KPVKPGQNIRPKGEDIKKGEVL 143 (162)
T ss_dssp SSB--TTEEEEE-TTSB--TT-SEEEEGGGC-EEETTEEEES---S--STTTTEE-TTSSB-TTSEE
T ss_pred cccCCCCeEEEEeCCCccCCCCCEEEEehhe-eecccEEEEe---eccCCCCcEEeCCccccCCCEE
Confidence 4789999999999999999 8998875544 4444322211 11122 3455666666666553
No 65
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=28.12 E-value=42 Score=37.62 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=26.1
Q ss_pred ceEEEeCCeEEEEECCCCCCCcEEEEcCCC
Q 041932 26 KAKVLRDGKWKEEDAAILVPGDVISVKLGD 55 (348)
Q Consensus 26 ~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge 55 (348)
.+.++++|+|.+..+.+|++||.+.+...+
T Consensus 989 PVLv~~~Gk~i~K~A~dlK~GD~vvIPK~~ 1018 (1627)
T PRK14715 989 PVMVYENGKFIKKRAMDVKEGDLMLIPKLD 1018 (1627)
T ss_pred ceEEeccCccceeehhhcCcCceeeccccc
Confidence 466788999999999999999999988654
No 66
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=28.10 E-value=4.8e+02 Score=26.51 Aligned_cols=154 Identities=11% Similarity=0.077 Sum_probs=89.9
Q ss_pred eCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcceecCCCCeeeeeeeEecceEEEEEEEec
Q 041932 31 RDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATG 110 (348)
Q Consensus 31 r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G 110 (348)
+-|....+...+.+|-|-+.++ |+. -+|=-.+.|++.-+.-. .|+. ...|..+..|+....=.-.+.=+..|
T Consensus 74 ~~GDiv~v~~G~~iP~Dg~ii~-g~~-~vdes~lTGEs~pv~k~--~g~~----v~aGt~v~~G~~~~~V~~~g~~t~~~ 145 (536)
T TIGR01512 74 KVGDVVVVKPGERVPVDGVVLS-GTS-TVDESALTGESVPVEKA--PGDE----VFAGAINLDGVLTIVVTKLPADSTIA 145 (536)
T ss_pred CCCCEEEEcCCCEeecceEEEe-CcE-EEEecccCCCCCcEEeC--CCCE----EEeeeEECCceEEEEEEEeccccHHH
Confidence 3567788889999999999887 432 46777777776433322 2432 34677888887665433333334444
Q ss_pred chhHHHHHHhccc-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhchHHHHHhhhhhhhhcccccchhHHH
Q 041932 111 VHTFLGRAVHLVD-TTNHVGHFQKILTAVGKYCICSIALGLILEIIV-MYAVQHREYRTGLDNLLVPLIGGVPIALPTVL 188 (348)
Q Consensus 111 ~~t~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~ 188 (348)
.=..+ +.+... ...-....+++.+.+....+...++..+..++. .+.+ .+..++..++..+.++.|.+.|+++
T Consensus 146 ~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~svlv~~~P~aL~la~~~~~ 220 (536)
T TIGR01512 146 KIVNL--VEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLKRWPF---WVYRALVLLVVASPCALVISAPAAY 220 (536)
T ss_pred HHHHH--HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHhhcCccccccchHHHH
Confidence 32222 222222 223334567777777766443333333332222 1221 3445666777888999999999998
Q ss_pred HHHHHHHHH
Q 041932 189 SVIMAIGSQ 197 (348)
Q Consensus 189 ~~~~~~~~~ 197 (348)
..+.....+
T Consensus 221 ~~~~~~~~k 229 (536)
T TIGR01512 221 LSAISAAAR 229 (536)
T ss_pred HHHHHHHHH
Confidence 887766553
No 67
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=27.60 E-value=2.4e+02 Score=26.56 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=13.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHhCC
Q 041932 179 GVPIALPTVLSVIMAIGSQQLSLQG 203 (348)
Q Consensus 179 ~~P~al~~~~~~~~~~~~~~l~k~g 203 (348)
.++..+|+++-++......+|.+++
T Consensus 55 ~l~~~lP~~~lia~~~~l~~L~~~~ 79 (354)
T PF03739_consen 55 ILSLILPLAFLIAVLLTLGRLSRNN 79 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344455555555555666666554
No 68
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=27.21 E-value=37 Score=28.88 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=22.8
Q ss_pred hhhcCccEEEecccCccccCceEEEE
Q 041932 213 VHMAGMDVLCCDKTGTLTLNKLTVDK 238 (348)
Q Consensus 213 e~l~~vd~i~fDKTGTLT~~~~~v~~ 238 (348)
|.+..++.++||=-|+||.|++.+..
T Consensus 2 ~~~~~i~~~v~d~dGv~tdg~~~~~~ 27 (169)
T TIGR02726 2 EQAKNIKLVILDVDGVMTDGRIVIND 27 (169)
T ss_pred CccccCeEEEEeCceeeECCeEEEcC
Confidence 55677999999999999999988874
No 69
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=25.94 E-value=1.2e+02 Score=27.04 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=17.0
Q ss_pred CceEEEeCCeEEEEECCCCCCCcEEEEcCCCEE
Q 041932 25 PKAKVLRDGKWKEEDAAILVPGDVISVKLGDIV 57 (348)
Q Consensus 25 ~~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~i 57 (348)
..++|..||..+.++ +|..|.|+|||.|
T Consensus 137 ~~v~V~~DG~~~t~~-----aG~~l~L~PGESi 164 (225)
T PF07385_consen 137 TDVTVPVDGIRRTVP-----AGTQLRLNPGESI 164 (225)
T ss_dssp S-EEEEETTEEEEE------TT-EEEE-TT-EE
T ss_pred CCeEEecCCcEEEec-----CCceEEeCCCCeE
Confidence 457788888877665 4777777777765
No 70
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.87 E-value=75 Score=31.21 Aligned_cols=56 Identities=32% Similarity=0.430 Sum_probs=33.2
Q ss_pred CCCCCcEEEEcCCCEE--eeeEEEEe-----cCcc--EEe-----cccccCcCcceecCCCCeeeeeeeEe
Q 041932 42 ILVPGDVISVKLGDIV--PADARLLE-----GDPL--TID-----QSALTGESLTISKGPGDCVYSGSTCK 98 (348)
Q Consensus 42 ~l~~GDii~v~~Ge~i--PaDg~vl~-----g~~l--~vd-----es~lTGEs~pv~k~~g~~v~aGt~~~ 98 (348)
..-.|.+|-=.+|-.| |+||+|+- |.++ .+| -|.. |--.-+.+.+|++|.+|..+.
T Consensus 319 ~~wkG~vi~a~~Ga~V~A~AdG~VvyA~~l~GYG~vvIldhG~gy~sly-g~~~~i~v~~G~~V~AGepIa 388 (420)
T COG4942 319 LRWKGMVIGASAGATVKAIADGRVVYADWLRGYGLVVILDHGGGYHSLY-GGNQSILVNPGQFVKAGEPIA 388 (420)
T ss_pred ccccceEEecCCCCeeeeecCceEEechhhccCceEEEEEcCCccEEEe-cccceeeecCCCEeecCCchh
Confidence 3446788888888755 79999983 2221 122 2322 223346667777777776653
No 71
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=25.53 E-value=1.1e+02 Score=23.18 Aligned_cols=30 Identities=27% Similarity=0.185 Sum_probs=22.2
Q ss_pred ceEEEeCCeEEEEECC---------CCCCCcEEEEcCCC
Q 041932 26 KAKVLRDGKWKEEDAA---------ILVPGDVISVKLGD 55 (348)
Q Consensus 26 ~~~v~r~g~~~~i~~~---------~l~~GDii~v~~Ge 55 (348)
.++|-..|..++|+.. ++.+||-|+|..|-
T Consensus 16 ~A~vd~~Gv~reV~l~Lv~~~~~~~~~~vGDyVLVHaGf 54 (90)
T PRK10409 16 QAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGF 54 (90)
T ss_pred eEEEEcCCeEEEEEEeeecccCCCCccCCCCEEEEecCh
Confidence 4667667777777643 46899999999884
No 72
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=25.34 E-value=1.1e+02 Score=29.36 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=19.6
Q ss_pred CceEEEeCCeEEEEECCC----------CCCCcEEEEcC
Q 041932 25 PKAKVLRDGKWKEEDAAI----------LVPGDVISVKL 53 (348)
Q Consensus 25 ~~~~v~r~g~~~~i~~~~----------l~~GDii~v~~ 53 (348)
..+++.|+|+...++..+ |.+||+|.|..
T Consensus 198 ~~V~l~R~~~~~~i~l~dL~~~~~~ni~L~~GDvI~V~~ 236 (355)
T PRK15175 198 MEVHVTRQQHYFTARLSDIYQYPGLDIALQPDDRITLRQ 236 (355)
T ss_pred cEEEEEECCEEEEEEHHHHhhCCcCCcEeCCCCEEEEcc
Confidence 357889999888876655 45566665543
No 73
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=25.19 E-value=7e+02 Score=25.40 Aligned_cols=153 Identities=14% Similarity=0.106 Sum_probs=73.3
Q ss_pred CCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcceecCCCCeeeeeeeEecceEEEEEEEecc
Q 041932 32 DGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGV 111 (348)
Q Consensus 32 ~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~ 111 (348)
-|....+...+..|-|-+.++ |+ .-+|--.+.|++.-+.-. .|+ ....|..+..|+....=.-.+.=++.|.
T Consensus 76 ~GDiv~v~~G~~iP~Dg~vi~-g~-~~vdes~lTGEs~pv~k~--~g~----~v~aGt~v~~g~~~~~v~~~g~~t~~~~ 147 (556)
T TIGR01525 76 VGDIVIVRPGERIPVDGVVIS-GE-SEVDESALTGESMPVEKK--EGD----EVFAGTINGDGSLTIRVTKLGEDSTLAQ 147 (556)
T ss_pred CCCEEEECCCCEeccceEEEe-cc-eEEeehhccCCCCCEecC--CcC----EEeeceEECCceEEEEEEEecccCHHHH
Confidence 455666777777777777665 33 346666666665333322 122 2335666666765543333333344443
Q ss_pred hhHHHHHHhccc-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHH
Q 041932 112 HTFLGRAVHLVD-TTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSV 190 (348)
Q Consensus 112 ~t~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~ 190 (348)
=... +.+... ...-....+++.+++....+...++.+++.++.... .... .++..++..+.++.|.++|+++..
T Consensus 148 i~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~~-~~~~--~~~~vlv~~~P~al~l~~~~~~~~ 222 (556)
T TIGR01525 148 IVKL--VEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGAL-GALY--RALAVLVVACPCALGLATPVAILV 222 (556)
T ss_pred HHHH--HHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHH--HHHHHHhhccccchhehhHHHHHH
Confidence 2221 212222 222234556666666654333222222222211111 0011 233344555677777777777776
Q ss_pred HHHHHHH
Q 041932 191 IMAIGSQ 197 (348)
Q Consensus 191 ~~~~~~~ 197 (348)
+.....+
T Consensus 223 ~~~~~~~ 229 (556)
T TIGR01525 223 AIGVAAR 229 (556)
T ss_pred HHHHHHH
Confidence 6655443
No 74
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=24.77 E-value=92 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.8
Q ss_pred eEEEeCCeEEEEECCCCCCCcEEEEc
Q 041932 27 AKVLRDGKWKEEDAAILVPGDVISVK 52 (348)
Q Consensus 27 ~~v~r~g~~~~i~~~~l~~GDii~v~ 52 (348)
-.|..||+.+...-..|..||+|.+.
T Consensus 37 g~V~vNGe~EtRRgkKlr~gd~V~i~ 62 (73)
T COG2501 37 GEVKVNGEVETRRGKKLRDGDVVEIP 62 (73)
T ss_pred CeEEECCeeeeccCCEeecCCEEEEC
Confidence 36888999999999999999999884
No 75
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=24.27 E-value=5.5e+02 Score=28.20 Aligned_cols=192 Identities=17% Similarity=0.104 Sum_probs=113.8
Q ss_pred hhHHHHHHhHHHHHHHHHhcCCC------ceEE----EeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEe
Q 041932 3 TVCFIQENNAGAASTALMAHLAP------KAKV----LRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTID 72 (348)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~------~~~v----~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vd 72 (348)
...-++..++-++++++...... ...+ +.-|....+...|.+|-|..+++..+ .-+|=-.+.|+++-++
T Consensus 121 ~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~-l~VdEs~LTGES~pv~ 199 (917)
T COG0474 121 FVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSD-LEVDESALTGESLPVE 199 (917)
T ss_pred HHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecC-ceEEcccccCCCcchh
Confidence 34556777788888777666432 1222 23467888999999999999999887 5567777777764343
Q ss_pred cccc--cCcCccee---c---CCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhcccccCCCChHHHHHHHHHHHHHH
Q 041932 73 QSAL--TGESLTIS---K---GPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCIC 144 (348)
Q Consensus 73 es~l--TGEs~pv~---k---~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (348)
-... +.+..|.. + -.|..|..|.-..-=...+.-+..|..+..-+..+. ....-...+.++...+..+.+.
T Consensus 200 K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~-~~t~l~~~l~~~~~~l~~~~l~ 278 (917)
T COG0474 200 KQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKE-VKTPLQRKLNKLGKFLLVLALV 278 (917)
T ss_pred ccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccc-cCCcHHHHHHHHHHHHHHHHHH
Confidence 3222 22233222 3 458888888854333455566777776665433321 2222233456666666665444
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHH
Q 041932 145 SIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGS 196 (348)
Q Consensus 145 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~ 196 (348)
..++.++...+.........+..++..+++....+.|..+-+++.+....-.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~ma 330 (917)
T COG0474 279 LGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRMA 330 (917)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 4443333333321111123456777778888888899888777777665433
No 76
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=24.16 E-value=7e+02 Score=25.55 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=83.5
Q ss_pred eCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcceecCCCCeeeeeeeEecceEEEEEEEec
Q 041932 31 RDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATG 110 (348)
Q Consensus 31 r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G 110 (348)
+-|....+..-+..|=|-+.++ |+- -+|=-.+.|+++-++-. .|. ....|..+..|+....=.-.+.=+..|
T Consensus 111 ~~GDii~v~~Ge~iP~Dg~v~~-g~~-~vdes~lTGEs~pv~k~--~gd----~V~aGt~~~~g~~~~~v~~~g~~t~~~ 182 (562)
T TIGR01511 111 QPGDIVKVLPGEKIPVDGTVIE-GES-EVDESLVTGESLPVPKK--VGD----PVIAGTVNGTGSLVVRATATGEDTTLA 182 (562)
T ss_pred CCCCEEEECCCCEecCceEEEE-Cce-EEehHhhcCCCCcEEcC--CCC----EEEeeeEECCceEEEEEEEecCCChHH
Confidence 4577888888888998988886 442 46666667776433322 132 234677777777655433333334444
Q ss_pred chhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHH
Q 041932 111 VHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLS 189 (348)
Q Consensus 111 ~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~ 189 (348)
.=..+ +.+..... .-....+++...+....+.+.++.+ +.+...+. .++...+..+.++.|.+.|+++.
T Consensus 183 ~i~~~--v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~-~~~~~~~~-------~~~svlvvacPcaL~la~p~a~~ 252 (562)
T TIGR01511 183 QIVRL--VRQAQQSKAPIQRLADKVAGYFVPVVIAIALITF-VIWLFALE-------FAVTVLIIACPCALGLATPTVIA 252 (562)
T ss_pred HHHHH--HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHhccchhhhHHHHHHH
Confidence 32222 22223222 2234456677776655333323222 22322222 23445666778888889888888
Q ss_pred HHHHHHHHH
Q 041932 190 VIMAIGSQQ 198 (348)
Q Consensus 190 ~~~~~~~~~ 198 (348)
.+...+.++
T Consensus 253 ~~~~~aa~~ 261 (562)
T TIGR01511 253 VATGLAAKN 261 (562)
T ss_pred HHHHHHHHC
Confidence 887765544
No 77
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=23.92 E-value=43 Score=27.26 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=15.0
Q ss_pred EEEECCCCCCCcEEEEcC
Q 041932 36 KEEDAAILVPGDVISVKL 53 (348)
Q Consensus 36 ~~i~~~~l~~GDii~v~~ 53 (348)
..|+.++++|||+|..+.
T Consensus 70 ~~v~~~~~qpGDlvff~~ 87 (134)
T TIGR02219 70 VPVPCDAAQPGDVLVFRW 87 (134)
T ss_pred cccchhcCCCCCEEEEee
Confidence 457778999999999973
No 78
>PRK06033 hypothetical protein; Validated
Probab=23.73 E-value=31 Score=25.75 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=15.2
Q ss_pred EECCCCCCCcEEEEcCCCEEeee
Q 041932 38 EDAAILVPGDVISVKLGDIVPAD 60 (348)
Q Consensus 38 i~~~~l~~GDii~v~~Ge~iPaD 60 (348)
....++...|++.+++||+||.|
T Consensus 15 Lg~~~i~l~dlL~L~~GDVI~L~ 37 (83)
T PRK06033 15 LGRSSMPIHQVLRMGRGAVIPLD 37 (83)
T ss_pred EecccccHHHHhCCCCCCEEEeC
Confidence 33456666677777777777765
No 79
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=23.64 E-value=1.3e+02 Score=29.33 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=25.2
Q ss_pred CceEEEeCCeEEEEECCC------------CCCCcEEEEcCC--CEEeeeEEE
Q 041932 25 PKAKVLRDGKWKEEDAAI------------LVPGDVISVKLG--DIVPADARL 63 (348)
Q Consensus 25 ~~~~v~r~g~~~~i~~~~------------l~~GDii~v~~G--e~iPaDg~v 63 (348)
..+.+.|+|+...++..+ |++||+|.|... ..+-+-|-+
T Consensus 211 ~~V~l~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~~~~~~v~V~GeV 263 (379)
T PRK15078 211 RNVVLTHNGKEERISLQALMQNGDLSQNRLLYPGDILYVPRNDDLKVFVMGEV 263 (379)
T ss_pred ceEEEEECCeEEEEEHHHHHhcCCcccCceeCCCCEEEECCCCCcEEEEeeec
Confidence 357889999988887532 677777777552 234444444
No 80
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=23.60 E-value=6.1e+02 Score=26.83 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=42.4
Q ss_pred eCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcceecCCCCeeeeeeeEec
Q 041932 31 RDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKR 99 (348)
Q Consensus 31 r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~k~~g~~v~aGt~~~~ 99 (348)
+-|....+..-|..|.|-+.++ |+ .-+|=-.+.|++.-|.-. .|...+. ...|..+.+|.....
T Consensus 124 ~~GDiV~v~~Gd~IPaDG~vie-G~-a~VDESaLTGES~PV~K~--~G~~~~~-V~aGT~v~~G~~~i~ 187 (679)
T PRK01122 124 RKGDIVLVEAGEIIPADGEVIE-GV-ASVDESAITGESAPVIRE--SGGDFSS-VTGGTRVLSDWIVIR 187 (679)
T ss_pred CCCCEEEEcCCCEEEEEEEEEE-cc-EEEEcccccCCCCceEeC--CCCccCe-EEeceEEEeeeEEEE
Confidence 4577888889999999988886 43 467777777776433322 2333332 566888888876543
No 81
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=23.42 E-value=92 Score=21.14 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=17.9
Q ss_pred EEeCCeEEEEECCCCCCCcEEEE
Q 041932 29 VLRDGKWKEEDAAILVPGDVISV 51 (348)
Q Consensus 29 v~r~g~~~~i~~~~l~~GDii~v 51 (348)
|.-||+...-+...|.+||.|.+
T Consensus 36 V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEccCCCCCCCCCCEEEe
Confidence 44488776667889999999876
No 82
>smart00532 LIGANc Ligase N family.
Probab=23.17 E-value=50 Score=32.82 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=19.5
Q ss_pred CCCCCCCcEEEEc-CCCEEee-eEEEE
Q 041932 40 AAILVPGDVISVK-LGDIVPA-DARLL 64 (348)
Q Consensus 40 ~~~l~~GDii~v~-~Ge~iPa-Dg~vl 64 (348)
-.+|.+||.|.|. +||+||- .+++.
T Consensus 360 ~~~i~iGd~V~V~raGdVIP~I~~vv~ 386 (441)
T smart00532 360 EKDIRIGDTVVVRKAGDVIPKVVGVVK 386 (441)
T ss_pred HcCCCCCCEEEEEECCCcCcceeeccc
Confidence 4789999999985 8999994 44443
No 83
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=23.11 E-value=50 Score=33.86 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=16.8
Q ss_pred CCCCCCCcEEEE-cCCCEEee
Q 041932 40 AAILVPGDVISV-KLGDIVPA 59 (348)
Q Consensus 40 ~~~l~~GDii~v-~~Ge~iPa 59 (348)
-.+|.+||.|.| ++||+||.
T Consensus 357 ~~~I~iGD~V~V~raGdVIP~ 377 (562)
T PRK08097 357 QWDIAPGDQVLVSLAGQGIPR 377 (562)
T ss_pred HcCCCCCCEEEEEecCCCCcc
Confidence 467899998887 58999994
No 84
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=23.09 E-value=1.4e+02 Score=19.94 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=26.3
Q ss_pred CceEEE-eCCeEEEEEC-CCCCCCcEEEEcCCCEEee
Q 041932 25 PKAKVL-RDGKWKEEDA-AILVPGDVISVKLGDIVPA 59 (348)
Q Consensus 25 ~~~~v~-r~g~~~~i~~-~~l~~GDii~v~~Ge~iPa 59 (348)
..+.|+ .||+...|+. .+..+||.|.+.+.+..+.
T Consensus 6 ~~aiVlT~dGeF~~ik~~~~~~vG~eI~~~~~~~~~~ 42 (56)
T PF12791_consen 6 KYAIVLTPDGEFIKIKRKPGMEVGQEIEFDEKDIINK 42 (56)
T ss_pred CEEEEEcCCCcEEEEeCCCCCcccCEEEEechhhccc
Confidence 456665 5788888864 3699999999998877653
No 85
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=22.59 E-value=6.8e+02 Score=27.43 Aligned_cols=184 Identities=14% Similarity=0.035 Sum_probs=97.8
Q ss_pred HHHHHHhHHHHHHHHHhcCCC------------ceEE----EeCCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCc
Q 041932 5 CFIQENNAGAASTALMAHLAP------------KAKV----LRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDP 68 (348)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~~~~------------~~~v----~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~ 68 (348)
.-+...++.++++++...... ...| +.-|....+..-+.+|-|.++++.. -+-+|=-.+.|++
T Consensus 131 qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g~-~l~VDES~LTGES 209 (903)
T PRK15122 131 QEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESR-DLFISQAVLTGEA 209 (903)
T ss_pred HHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcC-ceEEEccccCCCC
Confidence 344566777777776543321 1222 2246678888889999998888643 3456766777776
Q ss_pred cEEecccc------------cCcCcc-----eecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-C---C
Q 041932 69 LTIDQSAL------------TGESLT-----ISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-N---H 127 (348)
Q Consensus 69 l~vdes~l------------TGEs~p-----v~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~---~ 127 (348)
.-|+-... .++..+ -..-.|..+..|+...-=...+.=+..|.=.. +...-+.. . +
T Consensus 210 ~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~---~v~~~~~~t~l~~~ 286 (903)
T PRK15122 210 LPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAK---SIVGTRAQTAFDRG 286 (903)
T ss_pred cceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHH---HhcCCCCCCcHHHH
Confidence 44444321 122111 23467899999976543333333344443222 22112221 1 1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHH
Q 041932 128 VGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGS 196 (348)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~ 196 (348)
-.++.+.+.+++.+++++++++..+ ....| ...+..++..++.....+.|.++++++..+.....
T Consensus 287 l~~i~~~l~~~~~~~~~~v~~~~~~-~~~~~---~~~l~~aisl~V~~~Pe~Lp~~vt~~La~g~~~ma 351 (903)
T PRK15122 287 VNSVSWLLIRFMLVMVPVVLLINGF-TKGDW---LEALLFALAVAVGLTPEMLPMIVSSNLAKGAIAMA 351 (903)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh-ccCCH---HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 1345566666655544332222111 11111 22344566777888888899988888887654433
No 86
>PRK06788 flagellar motor switch protein; Validated
Probab=22.21 E-value=31 Score=27.70 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=37.9
Q ss_pred EEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcceecCC-CCeeeeeeeEe-cceEEEEEEEecchhH
Q 041932 37 EEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGP-GDCVYSGSTCK-RGEIQAVVIATGVHTF 114 (348)
Q Consensus 37 ~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv~k~~-g~~v~aGt~~~-~g~~~~~V~~~G~~t~ 114 (348)
.+...++.++|++.++.||+||.|-..- .|+.-.. |-.+|.|.... ++..-++++....+-.
T Consensus 41 eLG~t~ltl~DlL~L~vGDVI~Ldk~~~----------------dpv~v~Vng~~~f~G~~Gv~~~~~AVrItei~~~~~ 104 (119)
T PRK06788 41 KLGKASITLGDVKQLKVGDVLEVEKNLG----------------HKVDVYLSNMKVGIGEAIVMDEKFGIIISEIEADKK 104 (119)
T ss_pred EEecceecHHHHhCCCCCCEEEeCCcCC----------------CCEEEEECCEEEEEEEEEEECCEEEEEEEEecChHH
Confidence 3456777888888888888888863321 1222222 33566666654 4566667777776544
No 87
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=22.18 E-value=85 Score=34.09 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=26.4
Q ss_pred ceEEEeCCeEEEEECCCCCCCcEEEEcCCCEEeee
Q 041932 26 KAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60 (348)
Q Consensus 26 ~~~v~r~g~~~~i~~~~l~~GDii~v~~Ge~iPaD 60 (348)
+..+.+||+..++..++|++||.|.+.. .+|.+
T Consensus 170 ~~~v~~~g~~~~~~a~~l~~GD~i~~~~--~~~~~ 202 (858)
T PRK14898 170 SFVTRKDNEVIPVEGSELKIGDWLPVVR--SLPAN 202 (858)
T ss_pred eEEEeeCCeEEEeeHHhCCCCCEEeeee--ecccc
Confidence 3556789999999999999999997754 55553
No 88
>PRK11479 hypothetical protein; Provisional
Probab=21.99 E-value=46 Score=30.81 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=18.2
Q ss_pred EEEECCCCCCCcEEEEcCCCEE
Q 041932 36 KEEDAAILVPGDVISVKLGDIV 57 (348)
Q Consensus 36 ~~i~~~~l~~GDii~v~~Ge~i 57 (348)
..|+.++++|||+|....+..+
T Consensus 58 ~~Vs~~~LqpGDLVFfst~t~~ 79 (274)
T PRK11479 58 KEITAPDLKPGDLLFSSSLGVT 79 (274)
T ss_pred cccChhhCCCCCEEEEecCCcc
Confidence 3789999999999999876543
No 89
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=21.77 E-value=2e+02 Score=24.60 Aligned_cols=55 Identities=27% Similarity=0.376 Sum_probs=42.8
Q ss_pred CCcEEEEcCCC---EEeeeEEEEe--------------cC----ccEEecccccCcCcceecCCCCeeeeeeeEec
Q 041932 45 PGDVISVKLGD---IVPADARLLE--------------GD----PLTIDQSALTGESLTISKGPGDCVYSGSTCKR 99 (348)
Q Consensus 45 ~GDii~v~~Ge---~iPaDg~vl~--------------g~----~l~vdes~lTGEs~pv~k~~g~~v~aGt~~~~ 99 (348)
.||=+-+.|-+ .-|+||.|.. |- -+-+|+-.|.||-.-...+.|+.|-+|..+.+
T Consensus 47 mGdGvAI~P~~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~ 122 (169)
T PRK09439 47 VGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIE 122 (169)
T ss_pred ccceEEEEccCCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccccCCCceEEEecCCCEEeCCCEEEE
Confidence 48777777654 5699999983 21 02479999999999999999999999998754
No 90
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=21.77 E-value=96 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=22.7
Q ss_pred EEeCCeEEEEECCCCCCCcEEEEcCCCEE
Q 041932 29 VLRDGKWKEEDAAILVPGDVISVKLGDIV 57 (348)
Q Consensus 29 v~r~g~~~~i~~~~l~~GDii~v~~Ge~i 57 (348)
|.-||+. .-+..++.+||.|.|+.|..+
T Consensus 36 V~vnG~~-~Kps~~V~~gd~l~v~~~~~~ 63 (133)
T PRK10348 36 VHYNGQR-SKPSKIVELNATLTLRQGNDE 63 (133)
T ss_pred EEECCEE-CCCCCccCCCCEEEEEECCEE
Confidence 4457877 788999999999999887643
No 91
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=21.57 E-value=2.2e+02 Score=22.70 Aligned_cols=67 Identities=22% Similarity=0.224 Sum_probs=33.6
Q ss_pred CCcEEEEcCCCEEeeeE-------EEEecCccEEec-ccccCcCcceecCCCCeeeeeeeEecceEEEEEEEecch
Q 041932 45 PGDVISVKLGDIVPADA-------RLLEGDPLTIDQ-SALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVH 112 (348)
Q Consensus 45 ~GDii~v~~Ge~iPaDg-------~vl~g~~l~vde-s~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~ 112 (348)
.||.|.+.+|..+=.|. ++++|. |.++. ..++=+..-+....|..+..|+.-.-=..++.++-.|..
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~~l~~l~I~G~-L~f~~~~~~~L~a~~I~V~~Gg~l~iGs~~~P~~~~~~I~L~G~~ 85 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTPKLGSLIIGGT-LIFDDDRDITLRAEYILVEGGGRLIIGSEDCPFQGKATITLYGRR 85 (125)
T ss_pred CCCEEEECCCCEEEEcCCChheeEEEEEEE-EEEccCCCCEEEEEEEEECCCCeEEecCCCCCcCceEEEEEEcCC
Confidence 57788888876665553 344554 35554 444444444444444444444443322334444444543
No 92
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=21.55 E-value=59 Score=26.29 Aligned_cols=15 Identities=33% Similarity=0.705 Sum_probs=12.4
Q ss_pred CCCCCCcEEEEcCCC
Q 041932 41 AILVPGDVISVKLGD 55 (348)
Q Consensus 41 ~~l~~GDii~v~~Ge 55 (348)
..++|||||++..|-
T Consensus 60 ~~~~PGDIirLt~Gy 74 (134)
T KOG3416|consen 60 CLIQPGDIIRLTGGY 74 (134)
T ss_pred cccCCccEEEecccc
Confidence 458999999998774
No 93
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=21.25 E-value=61 Score=28.25 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=16.6
Q ss_pred EEEECCCCCCCcEEEEcCCC
Q 041932 36 KEEDAAILVPGDVISVKLGD 55 (348)
Q Consensus 36 ~~i~~~~l~~GDii~v~~Ge 55 (348)
+.|+.++++|||+|..+.|.
T Consensus 122 ~~V~~~~lqpGDLVfF~~~~ 141 (190)
T PRK10838 122 KSVSRSKLRTGDLVLFRAGS 141 (190)
T ss_pred cCcccCCCCCCcEEEECCCC
Confidence 45778999999999998664
No 94
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=21.17 E-value=7.5e+02 Score=27.62 Aligned_cols=55 Identities=15% Similarity=0.324 Sum_probs=38.6
Q ss_pred hhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEE
Q 041932 171 NLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVD 237 (348)
Q Consensus 171 ~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~ 237 (348)
..+...+..+-.+.|.++|+++..+.. -++-+|++-+.+|.+-.---|-|+.++-
T Consensus 397 ~~~l~~l~iiv~~vP~~LP~~~ti~l~------------~~~~rL~k~~il~~~~~~ie~lG~v~vi 451 (1054)
T TIGR01657 397 KIILRSLDIITIVVPPALPAELSIGIN------------NSLARLKKKGIFCTSPFRINFAGKIDVC 451 (1054)
T ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHH------------HHHHHHHHCCEEEcCcccceecceeeEE
Confidence 344444555667789999999888864 3355666777888887777777776664
No 95
>PRK06437 hypothetical protein; Provisional
Probab=20.12 E-value=1.6e+02 Score=20.69 Aligned_cols=29 Identities=10% Similarity=-0.021 Sum_probs=17.2
Q ss_pred cCCCceEEEeCCeEEEEECCCCCCCcEEEE
Q 041932 22 HLAPKAKVLRDGKWKEEDAAILVPGDVISV 51 (348)
Q Consensus 22 ~~~~~~~v~r~g~~~~i~~~~l~~GDii~v 51 (348)
..+..+.|.+||+... +-..|..||.|.+
T Consensus 32 i~~~~vaV~vNg~iv~-~~~~L~dgD~Vei 60 (67)
T PRK06437 32 LDEEEYVVIVNGSPVL-EDHNVKKEDDVLI 60 (67)
T ss_pred CCCccEEEEECCEECC-CceEcCCCCEEEE
Confidence 4455667777776654 3344566666654
Done!