BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041933
         (309 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9E6N3|DEN_GAHVM Deneddylase OS=Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987)
            GN=MDV049 PE=3 SV=1
          Length = 3342

 Score = 34.3 bits (77), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 12/79 (15%)

Query: 73   PLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTATAQETLSQSKDVTSKLVGVVNFFISNV 132
            P   +A IW      SLL   L   C    D  TA+  L+ S DVT+ L       +S  
Sbjct: 2307 PPTALAVIWS-----SLLPDGLEQNCKSYDDVVTARGDLASSLDVTTSL-------LSCS 2354

Query: 133  ANKNIPPTVGPPNYYNQSG 151
             NKNI      PN Y+ +G
Sbjct: 2355 ENKNISSITDSPNLYDLTG 2373


>sp|Q6AP43|RPOA_DESPS DNA-directed RNA polymerase subunit alpha OS=Desulfotalea
           psychrophila (strain LSv54 / DSM 12343) GN=rpoA PE=3
           SV=1
          Length = 343

 Score = 32.0 bits (71), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 174 EVNFSNAAQEWGKYICEVSENGVCTTVGR-----LTPAFYDQMVAIVNVSYALYR 223
           E++ SN ++ +GK+IC+  E G  TT+G      L  +     +  V +  AL+ 
Sbjct: 25  EIDQSNHSETYGKFICQPLERGFATTIGNSLRRILLSSIQGAAITTVKIEGALHE 79


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,339,587
Number of Sequences: 539616
Number of extensions: 4757268
Number of successful extensions: 10476
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10474
Number of HSP's gapped (non-prelim): 3
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)