Query 041933
Match_columns 309
No_of_seqs 89 out of 91
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 12:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07912 Tweety_N N-terminal do 99.1 8E-11 1.7E-15 117.2 5.2 41 57-101 29-69 (418)
2 PF04906 Tweety: Tweety; Inte 95.7 0.018 4E-07 57.5 5.7 37 225-261 331-367 (406)
3 PF04906 Tweety: Tweety; Inte 90.6 0.34 7.5E-06 48.5 4.7 44 61-105 210-253 (406)
4 PF05478 Prominin: Prominin; 90.1 0.54 1.2E-05 50.8 5.8 29 247-275 401-429 (806)
5 PF15099 PIRT: Phosphoinositid 81.4 0.69 1.5E-05 40.3 1.0 30 260-289 82-112 (129)
6 PF12273 RCR: Chitin synthesis 75.4 1.8 4E-05 36.5 1.9 14 258-271 2-15 (130)
7 PF13908 Shisa: Wnt and FGF in 66.8 2.6 5.6E-05 37.2 0.9 10 90-99 95-104 (179)
8 PF12191 stn_TNFRSF12A: Tumour 65.4 2 4.4E-05 37.4 0.0 40 261-307 81-120 (129)
9 KOG4433 Tweety transmembrane/c 62.2 12 0.00026 39.2 4.8 57 227-285 357-417 (526)
10 PTZ00443 Thioredoxin domain-co 62.2 5.8 0.00013 36.9 2.4 34 68-101 172-205 (224)
11 PF14979 TMEM52: Transmembrane 59.4 6.5 0.00014 35.3 2.0 11 92-102 39-49 (154)
12 PF10577 UPF0560: Uncharacteri 58.4 11 0.00024 41.4 4.0 27 75-101 277-303 (807)
13 PF15345 TMEM51: Transmembrane 56.3 3.8 8.3E-05 38.9 0.1 38 255-292 54-91 (233)
14 PF05478 Prominin: Prominin; 51.1 7.4 0.00016 42.3 1.3 41 240-283 401-441 (806)
15 PF03172 Sp100: Sp100 domain; 48.7 16 0.00034 31.0 2.5 58 215-272 15-72 (103)
16 KOG4331 Polytopic membrane pro 48.7 17 0.00036 40.3 3.4 28 255-282 426-453 (865)
17 PF13994 PgaD: PgaD-like prote 48.1 14 0.0003 31.7 2.2 31 265-297 69-99 (138)
18 PF06084 Cytomega_TRL10: Cytom 47.9 9.5 0.00021 33.3 1.2 31 257-289 57-87 (150)
19 PF04156 IncA: IncA protein; 47.4 49 0.0011 29.0 5.6 60 72-132 36-111 (191)
20 PF12273 RCR: Chitin synthesis 47.2 8 0.00017 32.6 0.6 8 144-151 75-82 (130)
21 PF11669 WBP-1: WW domain-bind 46.6 13 0.00028 30.8 1.8 28 74-102 18-45 (102)
22 PF10854 DUF2649: Protein of u 46.0 25 0.00055 27.4 3.1 36 54-91 28-63 (67)
23 KOG3146 Dolichyl pyrophosphate 45.6 14 0.0003 35.1 2.0 31 61-91 152-182 (228)
24 PF15050 SCIMP: SCIMP protein 44.2 16 0.00034 32.1 1.9 50 75-127 10-64 (133)
25 PHA00646 hypothetical protein 44.1 21 0.00046 27.8 2.4 31 55-87 27-57 (65)
26 PF07204 Orthoreo_P10: Orthore 43.3 18 0.00039 30.4 2.1 11 92-102 58-68 (98)
27 PF15330 SIT: SHP2-interacting 40.7 37 0.00081 28.5 3.6 15 261-275 2-16 (107)
28 PHA03164 hypothetical protein; 40.2 32 0.0007 28.0 3.0 27 261-287 61-87 (88)
29 PF05915 DUF872: Eukaryotic pr 39.5 68 0.0015 27.2 5.1 33 250-283 35-67 (115)
30 cd07912 Tweety_N N-terminal do 38.9 74 0.0016 32.7 6.1 175 60-281 232-406 (418)
31 PF14979 TMEM52: Transmembrane 37.3 38 0.00081 30.5 3.3 37 246-284 7-43 (154)
32 PRK14584 hmsS hemin storage sy 36.0 93 0.002 28.0 5.6 32 258-289 59-90 (153)
33 PF05510 Sarcoglycan_2: Sarcog 35.8 50 0.0011 33.7 4.3 26 102-127 317-345 (386)
34 PRK14585 pgaD putative PGA bio 33.4 1.4E+02 0.003 26.6 6.1 76 197-293 6-85 (137)
35 PF12606 RELT: Tumour necrosis 33.0 58 0.0012 24.2 3.2 34 261-297 2-35 (50)
36 PF10873 DUF2668: Protein of u 31.5 23 0.0005 31.9 1.0 36 63-99 53-89 (155)
37 PF06024 DUF912: Nucleopolyhed 30.9 28 0.00061 28.6 1.4 36 255-291 60-95 (101)
38 PF08374 Protocadherin: Protoc 30.1 15 0.00033 34.8 -0.4 49 258-307 36-92 (221)
39 PF15105 TMEM61: TMEM61 protei 28.9 39 0.00085 31.2 2.0 46 263-308 59-107 (198)
40 PF03908 Sec20: Sec20; InterP 28.7 59 0.0013 25.8 2.9 19 264-284 73-91 (92)
41 PF05624 LSR: Lipolysis stimul 27.8 30 0.00065 25.6 0.9 23 258-280 2-24 (49)
42 TIGR03141 cytochro_ccmD heme e 26.9 72 0.0016 22.6 2.7 31 255-288 4-34 (45)
43 PF02439 Adeno_E3_CR2: Adenovi 26.8 48 0.001 23.5 1.8 21 82-102 11-32 (38)
44 PF14163 SieB: Superinfection 26.0 30 0.00066 29.7 0.8 26 253-281 30-55 (151)
45 PF01102 Glycophorin_A: Glycop 25.9 47 0.001 28.7 1.9 20 83-102 73-92 (122)
46 PF08510 PIG-P: PIG-P; InterP 24.9 67 0.0014 27.2 2.7 33 55-91 36-68 (126)
47 PF11980 DUF3481: Domain of un 24.3 72 0.0016 26.3 2.6 15 87-101 32-46 (87)
48 PF12877 DUF3827: Domain of un 23.6 60 0.0013 35.4 2.6 32 60-102 266-297 (684)
49 PF11027 DUF2615: Protein of u 23.2 75 0.0016 26.8 2.6 20 71-91 52-71 (103)
50 PF15482 CCER1: Coiled-coil do 23.0 30 0.00066 32.1 0.2 16 84-99 106-121 (214)
51 PF05393 Hum_adeno_E3A: Human 22.9 1.2E+02 0.0027 25.2 3.7 44 261-304 33-78 (94)
52 COG4768 Uncharacterized protei 22.0 1.1E+02 0.0024 27.2 3.5 18 258-275 3-20 (139)
53 PF11884 DUF3404: Domain of un 21.9 71 0.0015 31.1 2.5 43 246-290 218-260 (262)
54 TIGR01478 STEVOR variant surfa 20.9 1.2E+02 0.0026 30.0 3.8 29 261-293 264-292 (295)
55 PF05545 FixQ: Cbb3-type cytoc 20.8 2.3E+02 0.005 20.0 4.4 17 263-281 14-30 (49)
56 PF12365 DUF3649: Protein of u 20.4 1.6E+02 0.0034 19.4 3.1 21 254-274 5-25 (28)
57 smart00663 RPOLA_N RNA polymer 20.1 51 0.0011 32.2 1.1 25 152-177 232-256 (295)
58 PTZ00370 STEVOR; Provisional 20.1 93 0.002 30.8 2.9 20 261-281 260-279 (296)
No 1
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=99.09 E-value=8e-11 Score=117.16 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=37.8
Q ss_pred cCCCCcceeecccchHHHHHHHHHHHHHHHHHHHHhhhhhccccC
Q 041933 57 NISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQR 101 (309)
Q Consensus 57 ni~~~hywaSV~ft~~p~f~~a~~Wf~~fGl~ll~~~~c~Ccc~~ 101 (309)
|-.|+|||+||+|||+ +|++||+++|++++++|||+|||++
T Consensus 29 ~p~~~~Y~~Sv~~~a~----iaavwlil~ll~ll~~~~~~CCcr~ 69 (418)
T cd07912 29 NPEDEIYQQSLLILAS----IPAACLILSLLFLLVYLITRCCDRK 69 (418)
T ss_pred CCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3449999999999999 9999999999999999999999977
No 2
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=95.68 E-value=0.018 Score=57.46 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=30.7
Q ss_pred CcCccccccchhhHHhHhhccccCCchHHHHHHHHHH
Q 041933 225 VPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVI 261 (309)
Q Consensus 225 ~P~L~~L~dCtFVr~tF~~I~~~~CppLrr~sr~vw~ 261 (309)
...|..++||.-+++.+.+....-|-+--..+-.++.
T Consensus 331 l~~l~alldCr~lh~dY~~al~g~C~dg~eGl~~l~l 367 (406)
T PF04906_consen 331 LHQLTALLDCRGLHKDYVDALRGLCYDGLEGLLYLLL 367 (406)
T ss_pred HHHHHhhcccccHHHHHHHHHHhhccchHhHHHHHHH
Confidence 3457788999999999999999999888777766654
No 3
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=90.64 E-value=0.34 Score=48.53 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=29.8
Q ss_pred CcceeecccchHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCHH
Q 041933 61 KHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTA 105 (309)
Q Consensus 61 ~hywaSV~ft~~p~f~~a~~Wf~~fGl~ll~~~~c~Ccc~~~D~a 105 (309)
+.-|.-++|+..-+|++.+.| ++.|+-+....-=-.+|...|.-
T Consensus 210 ~Sk~~li~~~v~gll~lvisW-~~~g~~la~aV~~SDFC~~Pd~~ 253 (406)
T PF04906_consen 210 QSKCLLIVFSVLGLLALVISW-ISLGLELAAAVGLSDFCVDPDTY 253 (406)
T ss_pred cCcceEEEeeeccHHHHHHHH-HHHHHHHHhccchhhhccCHHHH
Confidence 344677778888888888888 44777777666666666655443
No 4
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=90.06 E-value=0.54 Score=50.81 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=21.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041933 247 HYCPDLRLYSKWIVIGLVIVSAAVMLSLI 275 (309)
Q Consensus 247 ~~CppLrr~sr~vw~GL~llS~avmLlli 275 (309)
..=|-.++|-+.-|.+-+.++..++|.++
T Consensus 401 ~~~~~~~~y~~yR~~~~lil~~~llLIv~ 429 (806)
T PF05478_consen 401 SFEDEYEKYDSYRWIVGLILCCVLLLIVL 429 (806)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888887777777666655
No 5
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=81.39 E-value=0.69 Score=40.30 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhcccccc
Q 041933 260 VIGLVIVSAAVMLSLIF-IFWVFYARKRRHE 289 (309)
Q Consensus 260 w~GL~llS~avmLlli~-~~Wvv~ar~rr~r 289 (309)
..|++++|+++||++.+ +.|+.+-|+++.|
T Consensus 82 ~~G~vlLs~GLmlL~~~alcW~~~~rkK~~k 112 (129)
T PF15099_consen 82 IFGPVLLSLGLMLLACSALCWKPIIRKKKKK 112 (129)
T ss_pred hehHHHHHHHHHHHHhhhheehhhhHhHHHH
Confidence 67999999999999987 6799877655543
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=75.44 E-value=1.8 Score=36.46 Aligned_cols=14 Identities=21% Similarity=0.866 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 041933 258 WIVIGLVIVSAAVM 271 (309)
Q Consensus 258 ~vw~GL~llS~avm 271 (309)
|+-++++++.+.++
T Consensus 2 W~l~~iii~~i~l~ 15 (130)
T PF12273_consen 2 WVLFAIIIVAILLF 15 (130)
T ss_pred eeeHHHHHHHHHHH
Confidence 44444444433333
No 7
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=66.83 E-value=2.6 Score=37.17 Aligned_cols=10 Identities=30% Similarity=1.115 Sum_probs=4.4
Q ss_pred HHhhhhhccc
Q 041933 90 LIKCLYHCCC 99 (309)
Q Consensus 90 l~~~~c~Ccc 99 (309)
+++++|+|||
T Consensus 95 Iv~~~Cc~c~ 104 (179)
T PF13908_consen 95 IVCFCCCCCC 104 (179)
T ss_pred Hhhheecccc
Confidence 3334444455
No 8
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=65.40 E-value=2 Score=37.44 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCCCCCCCC
Q 041933 261 IGLVIVSAAVMLSLIFIFWVFYARKRRHETDTGQSMHTTSPQDPSGK 307 (309)
Q Consensus 261 ~GL~llS~avmLlli~~~Wvv~ar~rr~r~~~~~~~~~~~~~~~~~~ 307 (309)
+++..+|+++++.+++ ..+++.|.||+|..+ ||-||-||.
T Consensus 81 i~~sal~v~lVl~lls-g~lv~rrcrrr~~~t------tPIeeTgg~ 120 (129)
T PF12191_consen 81 ILGSALSVVLVLALLS-GFLVWRRCRRREKFT------TPIEETGGE 120 (129)
T ss_dssp -----------------------------------------------
T ss_pred hhhhHHHHHHHHHHHH-HHHHHhhhhccccCC------CcccccCCC
Confidence 4556666776666663 566777777777665 455665553
No 9
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=62.24 E-value=12 Score=39.25 Aligned_cols=57 Identities=18% Similarity=0.393 Sum_probs=31.6
Q ss_pred CccccccchhhHHhHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcc
Q 041933 227 PLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIF----IFWVFYARK 285 (309)
Q Consensus 227 ~L~~L~dCtFVr~tF~~I~~~~CppLrr~sr~vw~GL~llS~avmLlli~----~~Wvv~ar~ 285 (309)
.|..|.||--+.+-|-+-...-|-+-=. .++|..|..+=.|++|+++. =.|+.+.++
T Consensus 357 qLtAlvdCr~lH~dy~~AlrGlC~~gl~--GL~~lml~s~L~a~~lsilv~~~~haW~~f~~r 417 (526)
T KOG4433|consen 357 QLTALVDCRSLHKDYVAALRGLCYDGLE--GLLYLMLFSFLTALALSILVCSDPHAWIYFTKR 417 (526)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHhccchhhhhccCC
Confidence 3556788888888887777777743222 23333333333444444441 127766555
No 10
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=62.21 E-value=5.8 Score=36.93 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=21.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhhccccC
Q 041933 68 GFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQR 101 (309)
Q Consensus 68 ~ft~~p~f~~a~~Wf~~fGl~ll~~~~c~Ccc~~ 101 (309)
-.++.|+|.+.+.--++||+.+-++++|.|||+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 205 (224)
T PTZ00443 172 YDAAFAGFFTISSFAFLFGILMGLMIALFAFSKG 205 (224)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 3456666665555445588887776666666653
No 11
>PF14979 TMEM52: Transmembrane 52
Probab=59.44 E-value=6.5 Score=35.28 Aligned_cols=11 Identities=27% Similarity=0.778 Sum_probs=5.9
Q ss_pred hhhhhccccCC
Q 041933 92 KCLYHCCCQRR 102 (309)
Q Consensus 92 ~~~c~Ccc~~~ 102 (309)
+.|-+|||.||
T Consensus 39 a~C~rfCClrk 49 (154)
T PF14979_consen 39 ASCVRFCCLRK 49 (154)
T ss_pred HHHHHHHHhcc
Confidence 33456666543
No 12
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=58.38 E-value=11 Score=41.43 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccC
Q 041933 75 FLIAAIWFLGFGLSLLIKCLYHCCCQR 101 (309)
Q Consensus 75 f~~a~~Wf~~fGl~ll~~~~c~Ccc~~ 101 (309)
-|+++.=||+++|+.+++|-|+++|.+
T Consensus 277 ~ILG~~~livl~lL~vLl~yCrrkc~~ 303 (807)
T PF10577_consen 277 AILGGTALIVLILLCVLLCYCRRKCLK 303 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 344445566666666666667777744
No 13
>PF15345 TMEM51: Transmembrane protein 51
Probab=56.31 E-value=3.8 Score=38.94 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 041933 255 YSKWIVIGLVIVSAAVMLSLIFIFWVFYARKRRHETDT 292 (309)
Q Consensus 255 ~sr~vw~GL~llS~avmLlli~~~Wvv~ar~rr~r~~~ 292 (309)
-++-.-++++||.+++||||++|..-+..+||+++...
T Consensus 54 ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 54 KSKTFSVAYVLVGSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred cceeEEEEEehhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34455578899999999999988888877666655554
No 14
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=51.11 E-value=7.4 Score=42.27 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=21.2
Q ss_pred hHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041933 240 TFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYA 283 (309)
Q Consensus 240 tF~~I~~~~CppLrr~sr~vw~GL~llS~avmLlli~~~Wvv~a 283 (309)
.|.+... +...-|.+...+-.+++++=+..+++-+ +.-+..
T Consensus 401 ~~~~~~~-~y~~yR~~~~lil~~~llLIv~~~~lGL--l~G~~G 441 (806)
T PF05478_consen 401 SFEDEYE-KYDSYRWIVGLILCCVLLLIVLCLLLGL--LCGCCG 441 (806)
T ss_pred cchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcc
Confidence 3434443 4566667776666666555444333333 455544
No 15
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=48.75 E-value=16 Score=30.96 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=47.2
Q ss_pred HHHHHHHHhhCcCccccccchhhHHhHhhccccCCchHHHHHHHHHHHHHHHHHHHHH
Q 041933 215 VNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVML 272 (309)
Q Consensus 215 ~n~s~~L~~y~P~L~~L~dCtFVr~tF~~I~~~~CppLrr~sr~vw~GL~llS~avmL 272 (309)
+..|+++.+-+|+|+.|.|..|+-+.-=.-+.+-|..+..-.|-+|.-|-=+--..-+
T Consensus 15 vEIa~AI~kpFPfl~gLrD~~~ItE~~y~e~~e~crnlvpv~rvvY~vLs~Lek~f~~ 72 (103)
T PF03172_consen 15 VEIAYAITKPFPFLEGLRDHSFITEQMYKESQEACRNLVPVQRVVYNVLSWLEKTFIR 72 (103)
T ss_pred HHHHHHHcccchHHHHhhhcccccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhH
Confidence 5678899999999999999999988766667778999888888888877666544433
No 16
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=48.73 E-value=17 Score=40.32 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041933 255 YSKWIVIGLVIVSAAVMLSLIFIFWVFY 282 (309)
Q Consensus 255 ~sr~vw~GL~llS~avmLlli~~~Wvv~ 282 (309)
...+.++||++=|..+.++++++|=.+.
T Consensus 426 ~~y~wv~~LVicsl~llvll~~~~Gll~ 453 (865)
T KOG4331|consen 426 PLYRWVVSLVICSLQLLVLLIGLFGLLC 453 (865)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888877776554443
No 17
>PF13994 PgaD: PgaD-like protein
Probab=48.13 E-value=14 Score=31.71 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccCC
Q 041933 265 IVSAAVMLSLIFIFWVFYARKRRHETDTGQSMH 297 (309)
Q Consensus 265 llS~avmLlli~~~Wvv~ar~rr~r~~~~~~~~ 297 (309)
+++++....++ .|..|++.|.+....+...+
T Consensus 69 ~i~~~~a~~Li--~Wa~yn~~Rf~~~~rr~~~~ 99 (138)
T PF13994_consen 69 LIALVNAVILI--LWAKYNRLRFRGRRRRRRPP 99 (138)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhcchhhccCCC
Confidence 33444444455 79999988777666655444
No 18
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=47.87 E-value=9.5 Score=33.30 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 041933 257 KWIVIGLVIVSAAVMLSLIFIFWVFYARKRRHE 289 (309)
Q Consensus 257 r~vw~GL~llS~avmLlli~~~Wvv~ar~rr~r 289 (309)
...|-+=-+++.-.+|++| |+++|+||+...
T Consensus 57 ysawgagsfiatliillvi--ffviy~re~~~~ 87 (150)
T PF06084_consen 57 YSAWGAGSFIATLIILLVI--FFVIYSREEEKN 87 (150)
T ss_pred hhhcccchHHHHHHHHHHH--hheeEecccccc
Confidence 3456666677888888899 999999998764
No 19
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.42 E-value=49 Score=29.03 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccCC----------------CHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 041933 72 APLFLIAAIWFLGFGLSLLIKCLYHCCCQRR----------------DTATAQETLSQSKDVTSKLVGVVNFFISNV 132 (309)
Q Consensus 72 ~p~f~~a~~Wf~~fGl~ll~~~~c~Ccc~~~----------------D~aTa~etL~~SKev~~~lV~~vN~~I~~v 132 (309)
+..+++.+++ ++.|++|+.....+|+|++. +....++.+.+..+...++-+.++..-+.+
T Consensus 36 ~~s~~lg~~~-lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 36 LISFILGIAL-LALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555 44666666655544444331 334456666666655555555555544443
No 20
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.22 E-value=8 Score=32.63 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=4.7
Q ss_pred CCcccCCC
Q 041933 144 PNYYNQSG 151 (309)
Q Consensus 144 p~yyNQSg 151 (309)
.-||++.|
T Consensus 75 ~g~Yd~~g 82 (130)
T PF12273_consen 75 PGYYDQQG 82 (130)
T ss_pred CCCCCCCC
Confidence 45666665
No 21
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=46.59 E-value=13 Score=30.77 Aligned_cols=28 Identities=25% Similarity=0.692 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 041933 74 LFLIAAIWFLGFGLSLLIKCLYHCCCQRR 102 (309)
Q Consensus 74 ~f~~a~~Wf~~fGl~ll~~~~c~Ccc~~~ 102 (309)
.+-+.-.|+| ++|++++.|||-|.++|+
T Consensus 18 ~~~~w~FWlv-~~liill~c~c~~~~~r~ 45 (102)
T PF11669_consen 18 YYELWYFWLV-WVLIILLSCCCACRHRRR 45 (102)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHH
No 22
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=45.99 E-value=25 Score=27.42 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=26.1
Q ss_pred ccccCCCCcceeecccchHHHHHHHHHHHHHHHHHHHH
Q 041933 54 GGWNISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLI 91 (309)
Q Consensus 54 ggwni~~~hywaSV~ft~~p~f~~a~~Wf~~fGl~ll~ 91 (309)
-|||+++-.| |+.--|+=+.++-..||..|=+.=.+
T Consensus 28 ~~w~ltqneY--lt~MiGiWiVilFLtWf~lwm~fKiv 63 (67)
T PF10854_consen 28 TTWNLTQNEY--LTIMIGIWIVILFLTWFLLWMVFKIV 63 (67)
T ss_pred eeeccccchh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999 56777777777777887766544333
No 23
>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]
Probab=45.61 E-value=14 Score=35.08 Aligned_cols=31 Identities=29% Similarity=0.257 Sum_probs=27.8
Q ss_pred CcceeecccchHHHHHHHHHHHHHHHHHHHH
Q 041933 61 KHDFSSVGFTAAPLFLIAAIWFLGFGLSLLI 91 (309)
Q Consensus 61 ~hywaSV~ft~~p~f~~a~~Wf~~fGl~ll~ 91 (309)
=|+|+-|.+.|+-|++++++||...|.+++-
T Consensus 152 yHt~sQVv~G~ivG~l~g~~Wf~~v~slll~ 182 (228)
T KOG3146|consen 152 YHTLSQVVVGAIVGGLVGILWFYLVNSLLLG 182 (228)
T ss_pred hccHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999988554
No 24
>PF15050 SCIMP: SCIMP protein
Probab=44.23 E-value=16 Score=32.07 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCC-----CHHHHHHHHhhhhhhhhhhhhhhhh
Q 041933 75 FLIAAIWFLGFGLSLLIKCLYHCCCQRR-----DTATAQETLSQSKDVTSKLVGVVNF 127 (309)
Q Consensus 75 f~~a~~Wf~~fGl~ll~~~~c~Ccc~~~-----D~aTa~etL~~SKev~~~lV~~vN~ 127 (309)
+++|++ .|+.++.|-+|++|-|-+..| ..|+-.+-=.|=.|-.++ |+.|+
T Consensus 10 iiLAVa-II~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~rdeEkmYE--Nv~n~ 64 (133)
T PF15050_consen 10 IILAVA-IILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQRDEEKMYE--NVLNQ 64 (133)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHccccceeccchhhhcccHHHHHH--HhhcC
No 25
>PHA00646 hypothetical protein
Probab=44.08 E-value=21 Score=27.80 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=25.2
Q ss_pred cccCCCCcceeecccchHHHHHHHHHHHHHHHH
Q 041933 55 GWNISEKHDFSSVGFTAAPLFLIAAIWFLGFGL 87 (309)
Q Consensus 55 gwni~~~hywaSV~ft~~p~f~~a~~Wf~~fGl 87 (309)
|||+++-.| +|.--|+=++++-..||..+=+
T Consensus 27 ~~~~~~~eY--~~~MVgIWlvI~Fl~Wf~i~mv 57 (65)
T PHA00646 27 MWNLTQNEY--LTLMVGIWLVILFLTWFSLWMV 57 (65)
T ss_pred EEeccccee--ehhHHHHHHHHHHHHHHHHHHH
Confidence 899999999 5677888888888888775543
No 26
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=43.30 E-value=18 Score=30.35 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=5.1
Q ss_pred hhhhhccccCC
Q 041933 92 KCLYHCCCQRR 102 (309)
Q Consensus 92 ~~~c~Ccc~~~ 102 (309)
+++-+|||.+.
T Consensus 58 i~Lv~CC~~K~ 68 (98)
T PF07204_consen 58 IALVCCCRAKH 68 (98)
T ss_pred HHHHHHhhhhh
Confidence 44445555443
No 27
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=40.70 E-value=37 Score=28.53 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 041933 261 IGLVIVSAAVMLSLI 275 (309)
Q Consensus 261 ~GL~llS~avmLlli 275 (309)
.=++++++.++||++
T Consensus 2 ~Ll~il~llLll~l~ 16 (107)
T PF15330_consen 2 LLLGILALLLLLSLA 16 (107)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345555555555555
No 28
>PHA03164 hypothetical protein; Provisional
Probab=40.24 E-value=32 Score=28.03 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 041933 261 IGLVIVSAAVMLSLIFIFWVFYARKRR 287 (309)
Q Consensus 261 ~GL~llS~avmLlli~~~Wvv~ar~rr 287 (309)
+-|.-++++|.|.++|++.++.-|+++
T Consensus 61 lvLtgLaIamILfiifvlyvFnVnr~~ 87 (88)
T PHA03164 61 LVLTGLAIAMILFIIFVLYVFNVNRGG 87 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeccCC
Confidence 334556778888888767877666554
No 29
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=39.55 E-value=68 Score=27.25 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041933 250 PDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYA 283 (309)
Q Consensus 250 ppLrr~sr~vw~GL~llS~avmLlli~~~Wvv~a 283 (309)
|++|..-|.++.+++|+.++.+|++++ +.++..
T Consensus 35 P~~k~pwK~I~la~~Lli~G~~li~~g-~l~~~~ 67 (115)
T PF05915_consen 35 PKVKIPWKSIALAVFLLIFGTVLIIIG-LLLFFG 67 (115)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 457889999999999999999999986 334433
No 30
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=38.92 E-value=74 Score=32.66 Aligned_cols=175 Identities=18% Similarity=0.223 Sum_probs=99.7
Q ss_pred CCcceeecccchHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCC
Q 041933 60 EKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPP 139 (309)
Q Consensus 60 ~~hywaSV~ft~~p~f~~a~~Wf~~fGl~ll~~~~c~Ccc~~~D~aTa~etL~~SKev~~~lV~~vN~~I~~vsN~n~~p 139 (309)
.+.=|+-+.|+..-++++-+.| +++|+-+.+...-..+|..-| ++|.+..-....+
T Consensus 232 r~Sr~~li~~s~~g~l~l~~~W-~~~~~~l~~~v~~sDfC~~pd-----------------------~yi~~~~~~~~~~ 287 (418)
T cd07912 232 RHSRCLLIVFSVCGLFALIISW-LSLGLYLASAVALSDFCVDPD-----------------------DYVRNQTPSGLSS 287 (418)
T ss_pred HhcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcCHH-----------------------HHHHhccccccch
Confidence 4455788889999999999999 558888888777777776544 2233221100001
Q ss_pred CCCCCCcccCCCCCCccccCCCCCCCCCCCCCCCccccCchhhhhcccEeecCCCCccccCCccChHHHHHHHHHHHHHH
Q 041933 140 TVGPPNYYNQSGPLVPILCNPFNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSY 219 (309)
Q Consensus 140 ~~~~p~yyNQSgp~mP~LCNPf~~dy~~r~C~~geV~i~na~qvwk~y~C~~~~~g~C~t~GrltP~~Y~qm~aa~n~s~ 219 (309)
. ---||.+=.|.+ =|||...++. ....+.|+...++...=.. -..+.+.. ..-.++..--|.+.
T Consensus 288 d--i~~yy~~C~~~~---~npF~~~l~~-----~~~~l~~~~~~~~~~~~~~--~~~~~~~~----~~l~~~~~~ln~~e 351 (418)
T cd07912 288 D--ILQYYLTCEPST---TNPFQQRLTE-----SQRALTNMQSQVQGLLREA--VFEFPTAE----DNLLSLQGDLNSTE 351 (418)
T ss_pred H--HHHHHhcCCCCC---CCcchHhhHH-----HHHHHHHHHHHHHHHHHHh--cccCCccc----chHHHHHHHHHHHH
Confidence 0 123676533322 4788766643 2333433333333211000 11122211 12344555556655
Q ss_pred HHHhhCcCccccccchhhHHhHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041933 220 ALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVF 281 (309)
Q Consensus 220 ~L~~y~P~L~~L~dCtFVr~tF~~I~~~~CppLrr~sr~vw~GL~llS~avmLlli~~~Wvv 281 (309)
.. .-.|.-++||.-+.+-+.+-...-|-+-=.. .+|..|..+-+|.+++++ .|++
T Consensus 352 ~~---l~~l~a~ldCr~~h~~Y~~a~~g~C~~gl~G--l~~~~l~s~~~a~~~~~l--v~~~ 406 (418)
T cd07912 352 IN---LHQLTALLDCRGLHKDYVEALRGLCYDGLEG--LLYLLLFSLLAALLFTIL--VCVD 406 (418)
T ss_pred HH---HHHHHhhcchHHHHHHHHHHHHccccchHHH--HHHHHHHHHHHHHHHHHH--HHhc
Confidence 55 4467889999999999999999999654443 344455555566666666 5544
No 31
>PF14979 TMEM52: Transmembrane 52
Probab=37.30 E-value=38 Score=30.54 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=27.4
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041933 246 EHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYAR 284 (309)
Q Consensus 246 ~~~CppLrr~sr~vw~GL~llS~avmLlli~~~Wvv~ar 284 (309)
.++|++-.+.+..-|++|+++.++++|+-- ++..=-|
T Consensus 7 ~e~C~~~~~W~~LWyIwLill~~~llLLCG--~ta~C~r 43 (154)
T PF14979_consen 7 PEMCPPQTRWSSLWYIWLILLIGFLLLLCG--LTASCVR 43 (154)
T ss_pred cccCCCccceehhhHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 568998788888899999999887776654 4444333
No 32
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=35.99 E-value=93 Score=28.00 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 041933 258 WIVIGLVIVSAAVMLSLIFIFWVFYARKRRHE 289 (309)
Q Consensus 258 ~vw~GL~llS~avmLlli~~~Wvv~ar~rr~r 289 (309)
-+|.=+.-+.+|++..++.|.|.-|++.|-|.
T Consensus 59 ~~~tl~~yl~ial~nAvlLI~WA~YN~~RF~~ 90 (153)
T PRK14584 59 GLTTIALYLAIAAFNAVLLIIWAKYNQVRFQV 90 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34434444455555555555899999888765
No 33
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=35.79 E-value=50 Score=33.66 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=16.8
Q ss_pred CCHHHHHHHHhh---hhhhhhhhhhhhhh
Q 041933 102 RDTATAQETLSQ---SKDVTSKLVGVVNF 127 (309)
Q Consensus 102 ~D~aTa~etL~~---SKev~~~lV~~vN~ 127 (309)
+|.+|..+.|.. ..+-+.+|.++-++
T Consensus 317 rd~~ts~iqm~hh~si~~nT~eLR~ms~~ 345 (386)
T PF05510_consen 317 RDSKTSDIQMVHHSSIRDNTKELRQMSDQ 345 (386)
T ss_pred chhccCccccccccccccCHHHHHhhhcc
Confidence 388887777763 45566667766543
No 34
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=33.40 E-value=1.4e+02 Score=26.60 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=38.9
Q ss_pred cccCCccChHHHHHHHHHHHHHHHHHhhCcCccccccchhhHHhHhhccccCCchH----HHHHHHHHHHHHHHHHHHHH
Q 041933 197 CTTVGRLTPAFYDQMVAIVNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDL----RLYSKWIVIGLVIVSAAVML 272 (309)
Q Consensus 197 C~t~GrltP~~Y~qm~aa~n~s~~L~~y~P~L~~L~dCtFVr~tF~~I~~~~CppL----rr~sr~vw~GL~llS~avmL 272 (309)
=.|..|..|-..+-+.++.-=.-=+|=++-+|.++ |.. |. ..+.-.+|+-+++++
T Consensus 6 I~T~qr~~~rliD~~~T~laW~gf~~~~~~~l~~~------------l~~----p~~~~~~l~tl~~Y~~iAv~n----- 64 (137)
T PRK14585 6 ITTRQSPVRLLVDYVATTILWTLFALFIFLFAMDL------------LTG----YYWQSEARSRLQFYFLLAVAN----- 64 (137)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcc----hHHHHHHHHHHHHHHHHHHHH-----
Confidence 35677888876666655544333333333333333 211 22 333444554444333
Q ss_pred HHHHHHHHHhhcccccccccc
Q 041933 273 SLIFIFWVFYARKRRHETDTG 293 (309)
Q Consensus 273 lli~~~Wvv~ar~rr~r~~~~ 293 (309)
.++.|.|.-|++.|-|...++
T Consensus 65 AvvLI~WA~YNq~RF~~~~R~ 85 (137)
T PRK14585 65 AVVLIVWALYNKLRFQKQQHH 85 (137)
T ss_pred HHHHHHHHHHHHHHhhhhccC
Confidence 333347999998886555544
No 35
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=32.97 E-value=58 Score=24.18 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccccCC
Q 041933 261 IGLVIVSAAVMLSLIFIFWVFYARKRRHETDTGQSMH 297 (309)
Q Consensus 261 ~GL~llS~avmLlli~~~Wvv~ar~rr~r~~~~~~~~ 297 (309)
+.+++||+..++.+++ +-+.+ --++..|.+....
T Consensus 2 ~~~~iV~i~iv~~lLg-~~I~~--~~K~ygYkht~d~ 35 (50)
T PF12606_consen 2 IAFLIVSIFIVMGLLG-LSICT--TLKAYGYKHTVDP 35 (50)
T ss_pred eehHHHHHHHHHHHHH-HHHHH--HhhccccccccCC
Confidence 3456666665555553 23332 2334445555444
No 36
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=31.49 E-value=23 Score=31.87 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=19.7
Q ss_pred ceeecc-cchHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 041933 63 DFSSVG-FTAAPLFLIAAIWFLGFGLSLLIKCLYHCCC 99 (309)
Q Consensus 63 ywaSV~-ft~~p~f~~a~~Wf~~fGl~ll~~~~c~Ccc 99 (309)
|..+|. =||+.|++.+.+. +.+-++.+.||+|.|--
T Consensus 53 yi~~~lsgtAIaGIVfgiVf-imgvva~i~icvCmc~k 89 (155)
T PF10873_consen 53 YIGDVLSGTAIAGIVFGIVF-IMGVVAGIAICVCMCMK 89 (155)
T ss_pred hhccccccceeeeeehhhHH-HHHHHHHHHHHHhhhhh
Confidence 333433 3566666555554 33555556677777744
No 37
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=30.89 E-value=28 Score=28.57 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 041933 255 YSKWIVIGLVIVSAAVMLSLIFIFWVFYARKRRHETD 291 (309)
Q Consensus 255 ~sr~vw~GL~llS~avmLlli~~~Wvv~ar~rr~r~~ 291 (309)
..-.+|++++.+-..++++.+ |.+-+.-|+|++...
T Consensus 60 ~~~iili~lls~v~IlVily~-IyYFVILRer~~~~~ 95 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYA-IYYFVILRERQKSIR 95 (101)
T ss_pred cccchHHHHHHHHHHHHHHhh-heEEEEEeccccccc
Confidence 345677777665544444433 256666777776655
No 38
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=30.13 E-value=15 Score=34.78 Aligned_cols=49 Identities=29% Similarity=0.347 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccccc--cc--cCCCCCCCCCCCC
Q 041933 258 WIVIGLVIVSAAVMLSLIFIFWVFYARKRR----HETDT--GQ--SMHTTSPQDPSGK 307 (309)
Q Consensus 258 ~vw~GL~llS~avmLlli~~~Wvv~ar~rr----~r~~~--~~--~~~~~~~~~~~~~ 307 (309)
.+++-+++|+.+|.+.|| ||-++..|+.| ++.|- |+ ..-++|.||+..+
T Consensus 36 ~~~I~iaiVAG~~tVILV-I~i~v~vR~CRq~~~k~g~QagKqe~~e~~tPn~~nkq~ 92 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILV-IFIVVLVRYCRQSPHKKGYQAGKQENSEWVTPNQENKQK 92 (221)
T ss_pred ceeeeeeeecchhhhHHH-HHHHHHHHHHhhccccchhhhcccccccccCCCccchhh
Confidence 344445555555544444 24555556333 22222 33 2223677766554
No 39
>PF15105 TMEM61: TMEM61 protein family
Probab=28.85 E-value=39 Score=31.24 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc--cccccccccCCC-CCCCCCCCCC
Q 041933 263 LVIVSAAVMLSLIFIFWVFYARKR--RHETDTGQSMHT-TSPQDPSGKE 308 (309)
Q Consensus 263 L~llS~avmLlli~~~Wvv~ar~r--r~r~~~~~~~~~-~~~~~~~~~~ 308 (309)
|+--+++-+|++++++|-+++.-| -|++--|-+|++ |-+-|+..||
T Consensus 59 F~CCg~GGlLLl~GLLWSikas~~~~pr~d~y~lsrDLyyltvE~~eK~ 107 (198)
T PF15105_consen 59 FFCCGAGGLLLLFGLLWSIKASTRGPPRWDPYHLSRDLYYLTVESSEKE 107 (198)
T ss_pred EEeecccHHHHHHHHHhhhhcccCCCCCCCcccCCcccceEeecccccc
Confidence 333456778888888999998443 334444555555 5556666665
No 40
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=28.66 E-value=59 Score=25.82 Aligned_cols=19 Identities=11% Similarity=0.522 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 041933 264 VIVSAAVMLSLIFIFWVFYAR 284 (309)
Q Consensus 264 ~llS~avmLlli~~~Wvv~ar 284 (309)
+.++.+++++++ +||++.|
T Consensus 73 i~~~~~~f~~~v--~yI~~rR 91 (92)
T PF03908_consen 73 IFFAFLFFLLVV--LYILWRR 91 (92)
T ss_pred HHHHHHHHHHHH--HHHhhhc
Confidence 345566677777 8999765
No 41
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=27.77 E-value=30 Score=25.65 Aligned_cols=23 Identities=39% Similarity=0.842 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041933 258 WIVIGLVIVSAAVMLSLIFIFWV 280 (309)
Q Consensus 258 ~vw~GL~llS~avmLlli~~~Wv 280 (309)
|+.+.++++.+.+++++++|-|-
T Consensus 2 Wl~V~~iilg~~ll~~LigiCwC 24 (49)
T PF05624_consen 2 WLFVVLIILGALLLLLLIGICWC 24 (49)
T ss_pred eEEEeHHHHHHHHHHHHHHHHHH
Confidence 56678888888899999988885
No 42
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=26.94 E-value=72 Score=22.59 Aligned_cols=31 Identities=29% Similarity=0.594 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 041933 255 YSKWIVIGLVIVSAAVMLSLIFIFWVFYARKRRH 288 (309)
Q Consensus 255 ~sr~vw~GL~llS~avmLlli~~~Wvv~ar~rr~ 288 (309)
|.--||.+..+ ++.+++.++ +|.+..|++..
T Consensus 4 y~~yVW~sYg~-t~l~l~~li--~~~~~~~r~~~ 34 (45)
T TIGR03141 4 YAFYVWLAYGI-TALVLAGLI--LWSLLDRRRLL 34 (45)
T ss_pred ccHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHH
Confidence 44567777766 444444445 57665544433
No 43
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=26.83 E-value=48 Score=23.49 Aligned_cols=21 Identities=24% Similarity=0.931 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhh-hccccCC
Q 041933 82 FLGFGLSLLIKCLY-HCCCQRR 102 (309)
Q Consensus 82 f~~fGl~ll~~~~c-~Ccc~~~ 102 (309)
-|..|++++++|.. |=||.+|
T Consensus 11 ~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 11 AVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 35567777776654 3455554
No 44
>PF14163 SieB: Superinfection exclusion protein B
Probab=26.03 E-value=30 Score=29.68 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041933 253 RLYSKWIVIGLVIVSAAVMLSLIFIFWVF 281 (309)
Q Consensus 253 rr~sr~vw~GL~llS~avmLlli~~~Wvv 281 (309)
..|..|++.+++ +|++.++..+ ++.+
T Consensus 30 ~~y~~~i~~~fl-~s~s~li~~~--~~~~ 55 (151)
T PF14163_consen 30 IKYQPWIGLIFL-FSVSYLIAQL--LSFI 55 (151)
T ss_pred HhcchHHHHHHH-HHHHHHHHHH--HHHH
Confidence 456666666654 3455555555 4444
No 45
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.94 E-value=47 Score=28.66 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhhhccccCC
Q 041933 83 LGFGLSLLIKCLYHCCCQRR 102 (309)
Q Consensus 83 ~~fGl~ll~~~~c~Ccc~~~ 102 (309)
|.+|++++++++-||++|++
T Consensus 73 v~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 73 VMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55777777766678877653
No 46
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=24.85 E-value=67 Score=27.21 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=24.4
Q ss_pred cccCCCCcceeecccchHHHHHHHHHHHHHHHHHHHH
Q 041933 55 GWNISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLI 91 (309)
Q Consensus 55 gwni~~~hywaSV~ft~~p~f~~a~~Wf~~fGl~ll~ 91 (309)
|=..=-.+||| .++|.+++.+.+|..+|+.++-
T Consensus 36 gity~P~kyWA----laiP~~~l~~~l~~~~~y~~~N 68 (126)
T PF08510_consen 36 GITYYPDKYWA----LAIPSWLLMAMLFTYVGYPAYN 68 (126)
T ss_pred CccccCcchHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44445678999 6899999998887766666554
No 47
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=24.32 E-value=72 Score=26.32 Aligned_cols=15 Identities=13% Similarity=-0.013 Sum_probs=8.9
Q ss_pred HHHHHhhhhhccccC
Q 041933 87 LSLLIKCLYHCCCQR 101 (309)
Q Consensus 87 l~ll~~~~c~Ccc~~ 101 (309)
++|.+.++|+|.++.
T Consensus 32 v~l~vvL~C~r~~~a 46 (87)
T PF11980_consen 32 VCLGVVLYCHRFHWA 46 (87)
T ss_pred HHHHHHHhhhhhccc
Confidence 344556667777764
No 48
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=23.59 E-value=60 Score=35.35 Aligned_cols=32 Identities=22% Similarity=0.498 Sum_probs=17.9
Q ss_pred CCcceeecccchHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 041933 60 EKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRR 102 (309)
Q Consensus 60 ~~hywaSV~ft~~p~f~~a~~Wf~~fGl~ll~~~~c~Ccc~~~ 102 (309)
+...|==||- .+|++++ .+++|++|.|||+++
T Consensus 266 ~~NlWII~gV-lvPv~vV----------~~Iiiil~~~LCRk~ 297 (684)
T PF12877_consen 266 PNNLWIIAGV-LVPVLVV----------LLIIIILYWKLCRKN 297 (684)
T ss_pred CCCeEEEehH-hHHHHHH----------HHHHHHHHHHHhccc
Confidence 4678865554 3555443 233455666677664
No 49
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=23.24 E-value=75 Score=26.82 Aligned_cols=20 Identities=15% Similarity=0.798 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 041933 71 AAPLFLIAAIWFLGFGLSLLI 91 (309)
Q Consensus 71 ~~p~f~~a~~Wf~~fGl~ll~ 91 (309)
+...|+++.+|++ |+++|.+
T Consensus 52 ~~~~~~~~~~w~~-~A~~ly~ 71 (103)
T PF11027_consen 52 GNSMFMMMMLWMV-LAMALYL 71 (103)
T ss_pred CccHHHHHHHHHH-HHHHHHH
Confidence 4678999999965 7777766
No 50
>PF15482 CCER1: Coiled-coil domain-containing glutamate-rich protein family 1
Probab=22.97 E-value=30 Score=32.14 Aligned_cols=16 Identities=38% Similarity=0.874 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhhhccc
Q 041933 84 GFGLSLLIKCLYHCCC 99 (309)
Q Consensus 84 ~fGl~ll~~~~c~Ccc 99 (309)
+.||--|..|||.|.|
T Consensus 106 vygl~plc~cccscw~ 121 (214)
T PF15482_consen 106 VYGLHPLCLCCCSCWC 121 (214)
T ss_pred eeccCchhheeccccC
Confidence 4677666666666655
No 51
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=22.95 E-value=1.2e+02 Score=25.24 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hhccccccccccccCCCCCCCCC
Q 041933 261 IGLVIVSAAVMLSLIFIFWVF--YARKRRHETDTGQSMHTTSPQDP 304 (309)
Q Consensus 261 ~GL~llS~avmLlli~~~Wvv--~ar~rr~r~~~~~~~~~~~~~~~ 304 (309)
.|+-.++++.|+.++.|+|.+ .+|||-||---+..+-..|-.+.
T Consensus 33 Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPIYrPvI~~~P~~~~ 78 (94)
T PF05393_consen 33 LGMWFLVICGIFILLVILWFVCCKKRKRSRRPIYRPVIGLEPQNLQ 78 (94)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccCCCccc
No 52
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=21.96 E-value=1.1e+02 Score=27.22 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041933 258 WIVIGLVIVSAAVMLSLI 275 (309)
Q Consensus 258 ~vw~GL~llS~avmLlli 275 (309)
++|++++++++|+..++|
T Consensus 3 ilyIs~~iiAiAf~vL~I 20 (139)
T COG4768 3 ILYISLAIIAIAFLVLVI 20 (139)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 689999999999999999
No 53
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=21.93 E-value=71 Score=31.05 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=33.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 041933 246 EHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYARKRRHET 290 (309)
Q Consensus 246 ~~~CppLrr~sr~vw~GL~llS~avmLlli~~~Wvv~ar~rr~r~ 290 (309)
+|=|=.-+..+.++...|+++.++.+++++ -|.+|-+++++|.
T Consensus 218 gNlCw~~~~~s~l~~~~~i~L~~~~i~l~~--gw~~y~~~~krre 260 (262)
T PF11884_consen 218 GNLCWSEEDHSHLLRISMIALVLANILLVL--GWSLYRWNQKRRE 260 (262)
T ss_pred cceeeccCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 456766677888888888888777778788 6999987777664
No 54
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.85 E-value=1.2e+02 Score=30.03 Aligned_cols=29 Identities=24% Similarity=0.684 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 041933 261 IGLVIVSAAVMLSLIFIFWVFYARKRRHETDTG 293 (309)
Q Consensus 261 ~GL~llS~avmLlli~~~Wvv~ar~rr~r~~~~ 293 (309)
++||++-++|+|.++- .|.- |||+++.-|
T Consensus 264 aalvllil~vvliiLY-iWly---rrRK~swkh 292 (295)
T TIGR01478 264 AALVLIILTVVLIILY-IWLY---RRRKKSWKH 292 (295)
T ss_pred HHHHHHHHHHHHHHHH-HHHH---Hhhcccccc
Confidence 5677777777776663 4654 444444433
No 55
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.85 E-value=2.3e+02 Score=20.02 Aligned_cols=17 Identities=6% Similarity=0.524 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041933 263 LVIVSAAVMLSLIFIFWVF 281 (309)
Q Consensus 263 L~llS~avmLlli~~~Wvv 281 (309)
.+++..++++.++ .|+.
T Consensus 14 ~~v~~~~~F~gi~--~w~~ 30 (49)
T PF05545_consen 14 GTVLFFVFFIGIV--IWAY 30 (49)
T ss_pred HHHHHHHHHHHHH--HHHH
Confidence 3344444555555 5666
No 56
>PF12365 DUF3649: Protein of unknown function (DUF3649) ; InterPro: IPR022109 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length.
Probab=20.43 E-value=1.6e+02 Score=19.41 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041933 254 LYSKWIVIGLVIVSAAVMLSL 274 (309)
Q Consensus 254 r~sr~vw~GL~llS~avmLll 274 (309)
|.....|+|+++.|+.+-+..
T Consensus 5 rsa~rAW~Gll~~a~~l~~~~ 25 (28)
T PF12365_consen 5 RSAWRAWLGLLLPAALLALLA 25 (28)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 556778999999887665543
No 57
>smart00663 RPOLA_N RNA polymerase I subunit A N-terminus.
Probab=20.13 E-value=51 Score=32.23 Aligned_cols=25 Identities=32% Similarity=0.576 Sum_probs=16.7
Q ss_pred CCCccccCCCCCCCCCCCCCCCcccc
Q 041933 152 PLVPILCNPFNSDRTDRNCPDGEVNF 177 (309)
Q Consensus 152 p~mP~LCNPf~~dy~~r~C~~geV~i 177 (309)
.+=|.+|+|||.|| |..+=.--++-
T Consensus 232 r~n~~~c~~fNADF-DGDeMnih~pq 256 (295)
T smart00663 232 RLNPLVCSPYNADF-DGDEMNLHVPQ 256 (295)
T ss_pred EecCccCCcccCCc-CCCEEEEecCC
Confidence 34478999999999 66554333333
No 58
>PTZ00370 STEVOR; Provisional
Probab=20.09 E-value=93 Score=30.79 Aligned_cols=20 Identities=30% Similarity=0.851 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041933 261 IGLVIVSAAVMLSLIFIFWVF 281 (309)
Q Consensus 261 ~GL~llS~avmLlli~~~Wvv 281 (309)
++||++-++|+|.++- .|.-
T Consensus 260 aalvllil~vvliilY-iwly 279 (296)
T PTZ00370 260 AALVLLILAVVLIILY-IWLY 279 (296)
T ss_pred HHHHHHHHHHHHHHHH-HHHH
Confidence 5677777777776663 4655
Done!