Query 041933
Match_columns 309
No_of_seqs 89 out of 91
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 21:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwa_A Receptor tyrosine-prote 70.1 1.5 5E-05 30.8 1.0 40 249-289 2-41 (44)
2 3s8f_C Cytochrome C oxidase po 40.8 21 0.00073 23.7 2.8 23 64-89 9-31 (34)
3 2l2t_A Receptor tyrosine-prote 39.1 44 0.0015 23.2 4.3 9 279-287 30-38 (44)
4 2ks1_B Epidermal growth factor 38.2 6.5 0.00022 27.4 -0.1 9 279-287 31-39 (44)
5 2lk9_A Bone marrow stromal ant 35.4 37 0.0013 22.6 3.2 26 258-283 6-31 (35)
6 2nr1_A NR1 M2, M2; receptor, s 31.4 31 0.0011 21.9 2.2 15 75-90 8-22 (27)
7 2knc_A Integrin alpha-IIB; tra 16.8 2.1E+02 0.0071 20.5 4.6 10 258-267 18-27 (54)
8 2jo1_A Phospholemman; FXYD1, N 15.9 1.2E+02 0.004 23.2 3.2 24 73-97 19-42 (72)
9 2jp3_A FXYD domain-containing 15.6 1.1E+02 0.0037 23.1 2.9 25 72-97 19-43 (67)
10 2jwa_A Receptor tyrosine-prote 15.2 1.7E+02 0.0057 20.3 3.6 29 258-289 16-44 (44)
No 1
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=70.08 E-value=1.5 Score=30.79 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 041933 249 CPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYARKRRHE 289 (309)
Q Consensus 249 CppLrr~sr~vw~GL~llS~avmLlli~~~Wvv~ar~rr~r 289 (309)
||...+.+..-.++-.++.+. .+.++.+.|.+|-||||..
T Consensus 2 Cp~~~~~~~~~~Ia~~vVGvl-l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 2 CPAEQRASPLTSIISAVVGIL-LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp CCCCCCCCSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCCcccchHHHHHHHH-HHHHHHHHHHhheehhhhh
Confidence 666554444444444444422 1111212356666655543
No 2
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=40.76 E-value=21 Score=23.66 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=16.1
Q ss_pred eeecccchHHHHHHHHHHHHHHHHHH
Q 041933 64 FSSVGFTAAPLFLIAAIWFLGFGLSL 89 (309)
Q Consensus 64 waSV~ft~~p~f~~a~~Wf~~fGl~l 89 (309)
|+||.. -++.|.+.||..|++.+
T Consensus 9 l~~V~i---lg~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 9 LAVILV---LTLTILVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred ehHHHH---HHHHHHHHHHHHHeeee
Confidence 445543 35677889999998765
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=39.05 E-value=44 Score=23.22 Aligned_cols=9 Identities=22% Similarity=0.800 Sum_probs=3.4
Q ss_pred HHHhhcccc
Q 041933 279 WVFYARKRR 287 (309)
Q Consensus 279 Wvv~ar~rr 287 (309)
|.++-|+||
T Consensus 30 ~~~~~RRRr 38 (44)
T 2l2t_A 30 FAVYVRRKS 38 (44)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhhhh
Confidence 333333333
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=38.18 E-value=6.5 Score=27.36 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=3.5
Q ss_pred HHHhhcccc
Q 041933 279 WVFYARKRR 287 (309)
Q Consensus 279 Wvv~ar~rr 287 (309)
|.++-|+||
T Consensus 31 ~~~~~RRr~ 39 (44)
T 2ks1_B 31 IGLFMRRRH 39 (44)
T ss_dssp HHHHHHTTT
T ss_pred HHHHhhhhH
Confidence 333344433
No 5
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=35.40 E-value=37 Score=22.65 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041933 258 WIVIGLVIVSAAVMLSLIFIFWVFYA 283 (309)
Q Consensus 258 ~vw~GL~llS~avmLlli~~~Wvv~a 283 (309)
.+|+|.+++=+++.|.+..|++++.+
T Consensus 6 ~lg~Gvl~LLviV~LgV~LI~f~~kA 31 (35)
T 2lk9_A 6 LLGIGILVLLIIVILGVPLIIFTIKK 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred eecccHHHHHHHHHhcchheEEeeec
Confidence 47889888887777665533444433
No 6
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=31.38 E-value=31 Score=21.88 Aligned_cols=15 Identities=40% Similarity=0.800 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 041933 75 FLIAAIWFLGFGLSLL 90 (309)
Q Consensus 75 f~~a~~Wf~~fGl~ll 90 (309)
=+++++||. +|..|-
T Consensus 8 ~l~aa~wF~-WGvlln 22 (27)
T 2nr1_A 8 TLSSAMWFS-WGVLLN 22 (27)
T ss_dssp HHHHHHHHH-HHHHHH
T ss_pred ehhhhHHHh-hHhhee
Confidence 368999987 887764
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=16.78 E-value=2.1e+02 Score=20.54 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 041933 258 WIVIGLVIVS 267 (309)
Q Consensus 258 ~vw~GL~llS 267 (309)
.+-.||++++
T Consensus 18 svl~GLllL~ 27 (54)
T 2knc_A 18 GVLGGLLLLT 27 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=15.89 E-value=1.2e+02 Score=23.23 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Q 041933 73 PLFLIAAIWFLGFGLSLLIKCLYHC 97 (309)
Q Consensus 73 p~f~~a~~Wf~~fGl~ll~~~~c~C 97 (309)
-+.++|++-|+ .|+++++.-=|.|
T Consensus 19 GGLifA~vLfi-~GI~iilS~KckC 42 (72)
T 2jo1_A 19 GGLVIAGILFI-LGILIVLSRRCRC 42 (72)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred cchHHHHHHHH-HHHHHHHcCcccc
Confidence 46778888766 7777766443444
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=15.61 E-value=1.1e+02 Score=23.12 Aligned_cols=25 Identities=12% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Q 041933 72 APLFLIAAIWFLGFGLSLLIKCLYHC 97 (309)
Q Consensus 72 ~p~f~~a~~Wf~~fGl~ll~~~~c~C 97 (309)
+-|.++|++-|+ .|+++++.-=|.|
T Consensus 19 igGLifA~vLfi-~GI~iilS~kcrC 43 (67)
T 2jp3_A 19 LGGLIFGGLLCI-AGIALALSGKCKC 43 (67)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTHHHH
T ss_pred ecchhhHHHHHH-HHHHHHHcCcccc
Confidence 346778888766 7877777444444
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=15.24 E-value=1.7e+02 Score=20.27 Aligned_cols=29 Identities=7% Similarity=0.178 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 041933 258 WIVIGLVIVSAAVMLSLIFIFWVFYARKRRHE 289 (309)
Q Consensus 258 ~vw~GL~llS~avmLlli~~~Wvv~ar~rr~r 289 (309)
-.-+| +++.+.+.+.+. +|+=..|+++++
T Consensus 16 ~~vVG-vll~vi~~l~~~--~~~RRR~~~~kK 44 (44)
T 2jwa_A 16 SAVVG-ILLVVVLGVVFG--ILIKRRQQKIRK 44 (44)
T ss_dssp HHHHH-HHHHHHHHHHHH--HHHHHHCSCCCC
T ss_pred HHHHH-HHHHHHHHHHHH--hheehhhhhccC
Confidence 34567 667777777777 899888887763
Done!