Query 041933
Match_columns 309
No_of_seqs 89 out of 91
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 21:08:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041933.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041933hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dx5i2 g.3.11.1 (I:388-422) T 52.5 1.6 0.00011 27.6 0.2 27 145-175 1-27 (35)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 18.9 39 0.0028 21.3 2.6 8 284-291 26-33 (37)
3 d1p1ja1 c.2.1.3 (A:9-322,A:438 16.5 12 0.00088 34.6 -0.4 52 11-63 85-146 (410)
4 d1e0na_ b.72.1.1 (A:) Hypothet 16.1 11 0.00079 22.3 -0.6 8 142-149 10-17 (27)
5 d1t5oa_ c.124.1.5 (A:) Putativ 13.5 1.1E+02 0.0077 26.6 5.1 58 68-132 42-104 (340)
6 d1vf5c3 f.23.23.1 (C:250-286) 10.8 1.3E+02 0.0092 18.7 3.4 22 261-284 7-28 (37)
7 d1xj1a_ g.3.6.5 (A:) Vhv1.1, p 10.0 55 0.004 21.3 1.5 32 166-198 12-43 (47)
8 d1q90a3 f.23.23.1 (A:248-292) 9.0 1.3E+02 0.0091 19.5 2.9 22 261-284 6-27 (45)
9 d2gkpa1 d.351.1.1 (A:1-164) Hy 8.2 54 0.0039 26.5 1.0 17 57-73 3-19 (164)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 7.7 2.5E+02 0.018 19.5 4.6 35 252-286 21-56 (100)
No 1
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.49 E-value=1.6 Score=27.63 Aligned_cols=27 Identities=30% Similarity=0.744 Sum_probs=20.8
Q ss_pred CcccCCCCCCccccCCCCCCCCCCCCCCCcc
Q 041933 145 NYYNQSGPLVPILCNPFNSDRTDRNCPDGEV 175 (309)
Q Consensus 145 ~yyNQSgp~mP~LCNPf~~dy~~r~C~~geV 175 (309)
+|-||+. -|-.|||.+++ +-+||.|-|
T Consensus 1 mFCNqt~--CPAdCdP~~p~--~C~CPeGyI 27 (35)
T d1dx5i2 1 MFCNQTA--CPADCDPNTQA--SCECPEGYI 27 (35)
T ss_dssp ECCCSSE--EECEECTTSTT--CEECCTTEE
T ss_pred Ccccccc--CCCccCCCCCC--cccCCCceE
Confidence 3567765 78899999987 478998844
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=18.91 E-value=39 Score=21.25 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=4.4
Q ss_pred cccccccc
Q 041933 284 RKRRHETD 291 (309)
Q Consensus 284 r~rr~r~~ 291 (309)
||.+|+-|
T Consensus 26 rE~~REGy 33 (37)
T d1eysh2 26 REDKREGY 33 (37)
T ss_dssp HHTTSSSC
T ss_pred hcccccCC
Confidence 55555544
No 3
>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.52 E-value=12 Score=34.58 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=28.0
Q ss_pred cccceeeeccccccccccCCCceeecccccCCCCcC---CCC-------CCCCccccCCCCcc
Q 041933 11 PWRVRRSFLEENDVELLENNSSLILAANRTHRKDPL---DHF-------KYYKGGWNISEKHD 63 (309)
Q Consensus 11 ~w~~~~~~~~~~~~~~~~~~~~l~laa~rt~r~dpl---~~~-------~~y~ggwni~~~hy 63 (309)
+|+.|+-+.+.+--+--+..+++.| -.|+..+|+. ..| ..--|||||++.+-
T Consensus 85 ~w~tk~G~~~pny~GSltq~stirl-G~~~~g~~~~~p~kd~lPl~~p~DiVfGGWDI~~~nl 146 (410)
T d1p1ja1 85 EFQTKEGVKQPNYFGSMTQCSTLKL-GIDAEGNDVYAPFNSLLPMVSPNDFVVSGWDINNADL 146 (410)
T ss_dssp CEEETTEEECCCCTTCHHHHCEEEE-EECTTSCEEEEEGGGSSCCCCGGGEEEEEECSSCCCH
T ss_pred ccccccccccCccccceeeeceeec-cccCCCCcccccHHhcCCCCCcccEEEecccCCCCCH
Confidence 4666665555532111122244444 3456666643 222 34579999999873
No 4
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.06 E-value=11 Score=22.31 Aligned_cols=8 Identities=63% Similarity=1.227 Sum_probs=6.5
Q ss_pred CCCCcccC
Q 041933 142 GPPNYYNQ 149 (309)
Q Consensus 142 ~~p~yyNQ 149 (309)
|.|+|||-
T Consensus 10 grpmyyna 17 (27)
T d1e0na_ 10 GRPLYYNA 17 (27)
T ss_dssp SSEEEEET
T ss_pred Cceeeeeh
Confidence 58999993
No 5
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.46 E-value=1.1e+02 Score=26.55 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhhccccC-----CCHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 041933 68 GFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQR-----RDTATAQETLSQSKDVTSKLVGVVNFFISNV 132 (309)
Q Consensus 68 ~ft~~p~f~~a~~Wf~~fGl~ll~~~~c~Ccc~~-----~D~aTa~etL~~SKev~~~lV~~vN~~I~~v 132 (309)
.-=|+|.+.+|++| |++|.+ ..---.. ++...+.+.|..||=....|.+.+|.+...+
T Consensus 42 ~VRGAPaIgvaaa~----glala~---~~~~~~~~~e~~~~L~~a~~~L~~aRPTAVnL~nAl~r~~~~~ 104 (340)
T d1t5oa_ 42 AVRGAPALEAAGAY----GIALAA---REREFADVDELKEHLKKAADFLASTRPTAVNLFVGIERALNAA 104 (340)
T ss_dssp SSCSHHHHHHHHHH----HHHHHT---TSSCCSCHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHH----HHHHHH---HhhhcCCchhhHHHHHHHHHHHHhcCccchhHHHHHHHHhhhh
Confidence 33489999999987 555554 1110000 1344555556666666666666666555544
No 6
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.83 E-value=1.3e+02 Score=18.73 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 041933 261 IGLVIVSAAVMLSLIFIFWVFYAR 284 (309)
Q Consensus 261 ~GL~llS~avmLlli~~~Wvv~ar 284 (309)
.||++..+++|+.-+ +.++.-.
T Consensus 7 ~gl~~F~~~v~laQi--~lVlKKK 28 (37)
T d1vf5c3 7 KWMIAFICLVMLAQL--MLILKKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHTG
T ss_pred HHHHHHHHHHHHHHH--HHHHHHH
Confidence 377888889999999 7887543
No 7
>d1xj1a_ g.3.6.5 (A:) Vhv1.1, polydnaviral gene product {Campoletis sonorensis virus, CsIV [TaxId: 10484]}
Probab=9.97 E-value=55 Score=21.27 Aligned_cols=32 Identities=28% Similarity=0.743 Sum_probs=27.0
Q ss_pred CCCCCCCCccccCchhhhhcccEeecCCCCccc
Q 041933 166 TDRNCPDGEVNFSNAAQEWGKYICEVSENGVCT 198 (309)
Q Consensus 166 ~~r~C~~geV~i~na~qvwk~y~C~~~~~g~C~ 198 (309)
.++.|-..++.+++-..+ ++|+|.-.+.+.|.
T Consensus 12 s~~PCC~~~~~~~~S~~~-R~FiC~~~G~~~C~ 43 (47)
T d1xj1a_ 12 ADKPCCSKTVRYGDSKNV-RKFICDRDGEGVCV 43 (47)
T ss_dssp SSCCCCCEEECCSSCCEE-EEEEEECSSSSEEE
T ss_pred CCCCccccceeecCCCCc-ceeeecCCCCEeeC
Confidence 478999999999886665 78999999988885
No 8
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.99 E-value=1.3e+02 Score=19.48 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 041933 261 IGLVIVSAAVMLSLIFIFWVFYAR 284 (309)
Q Consensus 261 ~GL~llS~avmLlli~~~Wvv~ar 284 (309)
.||++..+++++..| |.++.-+
T Consensus 6 ~gll~F~~~v~laQi--~LVLKKK 27 (45)
T d1q90a3 6 QGLLVFFSFVLLTQV--LLVLKKK 27 (45)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHH
Confidence 377888888999999 7887543
No 9
>d2gkpa1 d.351.1.1 (A:1-164) Hypothetical protein NMB0488 {Neisseria meningitidis [TaxId: 487]}
Probab=8.21 E-value=54 Score=26.53 Aligned_cols=17 Identities=6% Similarity=-0.040 Sum_probs=12.8
Q ss_pred cCCCCcceeecccchHH
Q 041933 57 NISEKHDFSSVGFTAAP 73 (309)
Q Consensus 57 ni~~~hywaSV~ft~~p 73 (309)
+..++.||||+-+|.-.
T Consensus 3 ~~~~~~y~a~~~~n~~f 19 (164)
T d2gkpa1 3 FNQEQDYWAGYKANERA 19 (164)
T ss_dssp CCTTCEEEEEEEECSSC
T ss_pred cccCCceEEEEEecCcE
Confidence 35788899998887653
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.71 E-value=2.5e+02 Score=19.53 Aligned_cols=35 Identities=9% Similarity=0.299 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccc
Q 041933 252 LRLYSKWIVIGLVIVSAAVMLSLIFI-FWVFYARKR 286 (309)
Q Consensus 252 Lrr~sr~vw~GL~llS~avmLlli~~-~Wvv~ar~r 286 (309)
..+....++.-.+.+++++++.+.++ +|++...++
T Consensus 21 ~a~~i~~l~~~v~~i~~~I~~~V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 21 VATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33444444544444444444433311 345544333
Done!