Query 041936
Match_columns 402
No_of_seqs 578 out of 2465
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 12:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 9.2E-57 2E-61 437.9 46.0 362 37-399 435-798 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.4E-56 3E-61 436.7 45.8 362 40-402 371-766 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 7.3E-52 1.6E-56 400.4 37.7 349 41-402 89-474 (697)
4 PLN03081 pentatricopeptide (PP 100.0 8.9E-52 1.9E-56 399.7 35.6 349 37-401 121-505 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 6.4E-50 1.4E-54 395.6 38.4 350 39-400 222-667 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.6E-49 3.4E-54 392.8 37.0 351 38-402 151-501 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 1.6E-22 3.5E-27 203.7 43.1 342 46-399 472-813 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2.7E-22 5.9E-27 202.1 43.1 337 51-400 545-881 (899)
9 PRK11788 tetratricopeptide rep 99.9 5.5E-22 1.2E-26 180.5 35.0 294 84-385 44-347 (389)
10 PRK11788 tetratricopeptide rep 99.9 7.5E-22 1.6E-26 179.6 33.7 310 49-372 45-363 (389)
11 PRK15174 Vi polysaccharide exp 99.9 8.6E-20 1.9E-24 174.4 40.6 339 38-388 41-384 (656)
12 PRK15174 Vi polysaccharide exp 99.9 3.1E-18 6.7E-23 163.8 37.6 306 77-391 44-353 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-17 5.2E-22 158.1 42.0 327 48-385 136-571 (615)
14 PRK11447 cellulose synthase su 99.8 1.4E-16 3.1E-21 162.5 40.6 331 48-387 278-702 (1157)
15 PRK10049 pgaA outer membrane p 99.8 5.1E-16 1.1E-20 151.8 41.6 348 38-394 14-431 (765)
16 PRK11447 cellulose synthase su 99.8 5.9E-16 1.3E-20 158.1 41.1 334 45-385 309-740 (1157)
17 PRK10049 pgaA outer membrane p 99.8 1.5E-15 3.2E-20 148.6 42.0 343 42-392 52-463 (765)
18 TIGR00990 3a0801s09 mitochondr 99.8 9.8E-16 2.1E-20 147.0 39.3 305 77-388 129-499 (615)
19 PRK14574 hmsH outer membrane p 99.8 6.3E-15 1.4E-19 142.0 43.4 350 40-398 36-458 (822)
20 KOG4626 O-linked N-acetylgluco 99.8 7.4E-17 1.6E-21 142.7 26.7 329 45-387 122-487 (966)
21 KOG4626 O-linked N-acetylgluco 99.8 6.9E-17 1.5E-21 142.9 26.4 298 74-385 115-451 (966)
22 PRK14574 hmsH outer membrane p 99.8 4.8E-14 1E-18 136.0 40.6 345 44-396 73-490 (822)
23 PRK09782 bacteriophage N4 rece 99.7 2.3E-13 5E-18 133.9 40.1 323 53-389 356-710 (987)
24 PF13429 TPR_15: Tetratricopep 99.7 5.4E-17 1.2E-21 140.4 12.5 258 82-347 15-274 (280)
25 KOG4422 Uncharacterized conser 99.7 6.9E-14 1.5E-18 118.9 30.3 305 74-385 206-551 (625)
26 PRK10747 putative protoheme IX 99.7 1.5E-13 3.4E-18 124.3 33.2 284 88-384 97-389 (398)
27 PRK10747 putative protoheme IX 99.7 1.7E-13 3.7E-18 124.0 33.4 285 52-349 97-389 (398)
28 TIGR00540 hemY_coli hemY prote 99.7 1.5E-13 3.3E-18 125.0 32.5 299 78-384 85-398 (409)
29 PF13429 TPR_15: Tetratricopep 99.7 1.7E-16 3.6E-21 137.3 12.6 262 46-314 15-276 (280)
30 COG2956 Predicted N-acetylgluc 99.7 3.1E-13 6.8E-18 111.0 29.2 297 77-385 38-347 (389)
31 TIGR00540 hemY_coli hemY prote 99.7 5E-13 1.1E-17 121.6 32.9 290 51-349 96-398 (409)
32 KOG2076 RNA polymerase III tra 99.7 1E-12 2.2E-17 121.6 34.8 337 39-383 140-510 (895)
33 KOG4422 Uncharacterized conser 99.7 8.2E-13 1.8E-17 112.5 29.5 303 77-385 118-462 (625)
34 PRK09782 bacteriophage N4 rece 99.7 1.7E-12 3.7E-17 127.9 36.2 333 40-384 377-739 (987)
35 COG2956 Predicted N-acetylgluc 99.6 1.1E-12 2.3E-17 107.9 27.8 273 120-398 45-323 (389)
36 KOG1155 Anaphase-promoting com 99.6 1.1E-12 2.5E-17 112.7 27.6 299 89-398 241-548 (559)
37 KOG1126 DNA-binding cell divis 99.6 1.6E-13 3.5E-18 123.0 23.2 287 89-388 333-623 (638)
38 COG3071 HemY Uncharacterized e 99.6 1.6E-11 3.5E-16 104.0 32.3 284 89-384 98-389 (400)
39 KOG1126 DNA-binding cell divis 99.6 8.2E-13 1.8E-17 118.6 25.1 287 54-355 334-625 (638)
40 KOG1129 TPR repeat-containing 99.6 9.7E-13 2.1E-17 108.3 23.0 261 119-386 188-459 (478)
41 KOG2076 RNA polymerase III tra 99.6 2E-11 4.4E-16 113.2 32.7 311 82-396 146-489 (895)
42 COG3071 HemY Uncharacterized e 99.6 5E-11 1.1E-15 101.1 31.8 287 52-350 97-390 (400)
43 KOG1155 Anaphase-promoting com 99.6 2.3E-11 4.9E-16 104.9 30.0 261 117-385 234-495 (559)
44 KOG0495 HAT repeat protein [RN 99.5 2.8E-10 6.1E-15 102.3 33.9 340 39-395 550-890 (913)
45 TIGR02521 type_IV_pilW type IV 99.5 1.6E-11 3.5E-16 103.2 24.9 200 110-314 31-231 (234)
46 PRK12370 invasion protein regu 99.5 7.6E-11 1.6E-15 111.5 31.1 250 124-385 275-535 (553)
47 TIGR02521 type_IV_pilW type IV 99.5 3.8E-11 8.3E-16 100.9 26.3 201 144-349 30-231 (234)
48 PF12569 NARP1: NMDA receptor- 99.5 2.9E-10 6.3E-15 104.2 32.6 294 81-385 10-334 (517)
49 KOG0495 HAT repeat protein [RN 99.5 3.9E-09 8.6E-14 95.1 37.6 349 40-398 441-795 (913)
50 KOG2002 TPR-containing nuclear 99.5 8.8E-11 1.9E-15 109.9 28.3 278 108-391 450-751 (1018)
51 KOG2002 TPR-containing nuclear 99.5 5E-10 1.1E-14 105.0 32.9 338 52-396 177-536 (1018)
52 PRK12370 invasion protein regu 99.5 6.1E-11 1.3E-15 112.1 27.6 235 142-385 253-502 (553)
53 KOG2003 TPR repeat-containing 99.5 1E-10 2.2E-15 100.8 24.8 276 84-371 428-709 (840)
54 KOG0547 Translocase of outer m 99.4 4.7E-10 1E-14 97.6 28.3 323 51-384 127-565 (606)
55 KOG4318 Bicoid mRNA stability 99.4 2.3E-11 5E-16 112.5 20.0 247 70-336 20-286 (1088)
56 KOG1129 TPR repeat-containing 99.4 2.1E-10 4.5E-15 94.9 20.8 233 111-350 224-458 (478)
57 KOG2003 TPR repeat-containing 99.4 9.2E-10 2E-14 95.0 25.4 291 36-336 417-709 (840)
58 PF12569 NARP1: NMDA receptor- 99.4 3.4E-09 7.5E-14 97.3 30.7 291 47-349 12-333 (517)
59 PF13041 PPR_2: PPR repeat fam 99.4 1.8E-12 3.9E-17 79.4 6.5 49 179-227 1-49 (50)
60 KOG1915 Cell cycle control pro 99.4 1.9E-08 4E-13 87.6 32.5 333 51-396 85-546 (677)
61 PF13041 PPR_2: PPR repeat fam 99.4 2.4E-12 5.1E-17 78.9 6.6 47 285-331 2-48 (50)
62 KOG1173 Anaphase-promoting com 99.3 4.5E-09 9.7E-14 93.2 27.9 276 109-391 243-524 (611)
63 KOG1174 Anaphase-promoting com 99.3 5E-08 1.1E-12 83.5 31.6 306 79-394 198-509 (564)
64 PRK11189 lipoprotein NlpI; Pro 99.3 3.9E-09 8.4E-14 91.7 26.1 229 122-361 38-275 (296)
65 KOG1840 Kinesin light chain [C 99.3 4.2E-09 9.2E-14 95.6 26.6 245 140-384 194-478 (508)
66 KOG0547 Translocase of outer m 99.3 1.8E-08 3.8E-13 88.0 28.8 303 77-385 117-491 (606)
67 COG3063 PilF Tfp pilus assembl 99.3 5.5E-09 1.2E-13 82.5 22.8 194 81-278 41-234 (250)
68 cd05804 StaR_like StaR_like; a 99.3 1E-07 2.2E-12 85.7 34.4 304 76-385 7-336 (355)
69 KOG1840 Kinesin light chain [C 99.3 3.3E-09 7.1E-14 96.4 24.3 245 106-350 195-479 (508)
70 PRK11189 lipoprotein NlpI; Pro 99.3 8.7E-09 1.9E-13 89.5 26.3 219 88-316 39-266 (296)
71 KOG1173 Anaphase-promoting com 99.3 1.3E-08 2.9E-13 90.3 26.5 285 74-368 243-534 (611)
72 KOG1915 Cell cycle control pro 99.3 1.3E-07 2.9E-12 82.4 31.6 310 74-394 72-475 (677)
73 KOG1156 N-terminal acetyltrans 99.2 2.3E-07 5E-12 83.9 33.0 326 49-384 51-467 (700)
74 COG3063 PilF Tfp pilus assembl 99.2 3.4E-08 7.5E-13 78.1 24.2 198 112-314 37-235 (250)
75 KOG0624 dsRNA-activated protei 99.2 1.8E-07 3.8E-12 78.4 29.0 311 71-392 34-377 (504)
76 PF04733 Coatomer_E: Coatomer 99.2 2.7E-09 5.9E-14 91.4 18.5 151 224-385 110-265 (290)
77 KOG2047 mRNA splicing factor [ 99.2 1.2E-06 2.5E-11 79.5 34.1 57 41-102 140-196 (835)
78 KOG2376 Signal recognition par 99.1 6.9E-07 1.5E-11 80.1 31.5 344 47-402 20-504 (652)
79 KOG4318 Bicoid mRNA stability 99.1 4.5E-09 9.7E-14 97.8 18.2 256 96-374 11-289 (1088)
80 KOG1174 Anaphase-promoting com 99.1 3.7E-07 8.1E-12 78.4 27.2 296 54-360 211-509 (564)
81 KOG4340 Uncharacterized conser 99.1 1.1E-07 2.4E-12 78.1 23.1 335 36-384 7-374 (459)
82 PF04733 Coatomer_E: Coatomer 99.1 7.9E-09 1.7E-13 88.5 17.1 250 85-350 11-265 (290)
83 cd05804 StaR_like StaR_like; a 99.1 9.2E-07 2E-11 79.6 31.3 271 110-385 6-293 (355)
84 KOG4340 Uncharacterized conser 99.1 1.6E-07 3.4E-12 77.2 23.2 293 77-382 12-336 (459)
85 KOG4162 Predicted calmodulin-b 99.1 3E-06 6.5E-11 78.5 32.6 128 254-385 653-783 (799)
86 KOG0548 Molecular co-chaperone 99.0 1E-06 2.3E-11 78.2 26.9 332 49-389 12-459 (539)
87 KOG1156 N-terminal acetyltrans 99.0 6E-06 1.3E-10 75.1 31.6 339 39-389 8-438 (700)
88 KOG3785 Uncharacterized conser 99.0 1.1E-05 2.3E-10 68.3 29.1 338 45-393 28-497 (557)
89 KOG1070 rRNA processing protei 98.9 9E-07 2E-11 86.7 25.7 232 105-341 1453-1691(1710)
90 KOG2047 mRNA splicing factor [ 98.9 1.9E-05 4.1E-10 71.9 32.2 157 47-210 110-277 (835)
91 KOG3785 Uncharacterized conser 98.9 2.6E-06 5.7E-11 71.9 24.6 155 82-245 29-214 (557)
92 KOG3617 WD40 and TPR repeat-co 98.9 1.3E-06 2.7E-11 81.5 24.6 300 50-384 739-1108(1416)
93 PLN02789 farnesyltranstransfer 98.9 4.6E-06 1E-10 72.6 27.1 138 119-261 46-186 (320)
94 KOG1125 TPR repeat-containing 98.9 3.9E-07 8.3E-12 81.6 19.8 253 119-379 294-565 (579)
95 PRK04841 transcriptional regul 98.9 1.7E-05 3.8E-10 80.6 34.5 308 81-388 415-763 (903)
96 KOG1125 TPR repeat-containing 98.9 8.6E-07 1.9E-11 79.4 21.4 225 153-385 293-527 (579)
97 KOG1128 Uncharacterized conser 98.9 2E-06 4.3E-11 79.2 24.1 211 116-349 404-615 (777)
98 PLN02789 farnesyltranstransfer 98.9 6.1E-06 1.3E-10 71.9 26.0 207 85-298 47-267 (320)
99 KOG1128 Uncharacterized conser 98.8 6.3E-07 1.4E-11 82.4 18.9 221 142-385 395-616 (777)
100 KOG1070 rRNA processing protei 98.8 7E-06 1.5E-10 80.8 26.7 239 142-384 1455-1699(1710)
101 PRK15179 Vi polysaccharide bio 98.8 3.2E-06 7E-11 81.0 24.5 181 71-262 82-266 (694)
102 PRK04841 transcriptional regul 98.8 2.4E-05 5.1E-10 79.7 32.4 303 83-385 382-720 (903)
103 PRK10370 formate-dependent nit 98.8 2.6E-06 5.6E-11 69.1 20.2 120 229-351 52-174 (198)
104 KOG0985 Vesicle coat protein c 98.8 2E-05 4.3E-10 75.3 28.3 202 37-269 982-1184(1666)
105 TIGR03302 OM_YfiO outer membra 98.8 1.7E-06 3.6E-11 72.9 19.9 186 179-386 31-233 (235)
106 KOG2376 Signal recognition par 98.8 5.4E-05 1.2E-09 68.4 29.4 329 42-382 49-517 (652)
107 KOG3081 Vesicle coat complex C 98.8 1.2E-05 2.5E-10 65.5 23.0 137 188-335 115-255 (299)
108 KOG0624 dsRNA-activated protei 98.8 3.4E-05 7.4E-10 65.1 26.4 283 108-398 36-349 (504)
109 KOG4162 Predicted calmodulin-b 98.7 6.8E-05 1.5E-09 69.9 29.6 322 71-397 319-761 (799)
110 PF12854 PPR_1: PPR repeat 98.7 1.5E-08 3.2E-13 55.7 3.7 32 176-207 2-33 (34)
111 COG4783 Putative Zn-dependent 98.7 2E-05 4.3E-10 69.6 24.8 111 193-307 318-429 (484)
112 PF12854 PPR_1: PPR repeat 98.7 1.7E-08 3.7E-13 55.5 4.0 30 282-311 3-32 (34)
113 PRK14720 transcript cleavage f 98.7 8.7E-06 1.9E-10 79.0 24.4 238 74-367 30-268 (906)
114 PRK10370 formate-dependent nit 98.7 5.7E-06 1.2E-10 67.1 20.1 119 194-315 52-173 (198)
115 TIGR03302 OM_YfiO outer membra 98.7 2.4E-06 5.1E-11 72.0 18.6 186 73-280 31-232 (235)
116 COG5010 TadD Flp pilus assembl 98.7 7.7E-06 1.7E-10 66.4 19.5 159 185-347 70-228 (257)
117 KOG3081 Vesicle coat complex C 98.7 6E-05 1.3E-09 61.5 24.1 251 117-385 15-271 (299)
118 COG5010 TadD Flp pilus assembl 98.7 8.4E-06 1.8E-10 66.2 19.4 158 79-241 70-227 (257)
119 PRK15359 type III secretion sy 98.6 2.9E-06 6.2E-11 65.1 15.3 100 292-393 30-129 (144)
120 PRK14720 transcript cleavage f 98.6 2.6E-05 5.5E-10 75.9 24.7 239 38-332 30-268 (906)
121 KOG1914 mRNA cleavage and poly 98.6 0.0004 8.6E-09 62.4 30.9 154 232-387 347-503 (656)
122 PRK15179 Vi polysaccharide bio 98.6 4.4E-05 9.6E-10 73.4 25.2 211 79-300 53-269 (694)
123 KOG0985 Vesicle coat protein c 98.6 0.00014 3E-09 69.9 27.5 274 73-398 982-1257(1666)
124 KOG0548 Molecular co-chaperone 98.6 0.00024 5.3E-09 63.6 26.9 317 38-366 35-470 (539)
125 COG4783 Putative Zn-dependent 98.6 8.1E-05 1.8E-09 65.9 23.8 148 225-394 315-463 (484)
126 KOG3616 Selective LIM binding 98.6 2.5E-05 5.5E-10 72.3 20.9 139 222-382 738-876 (1636)
127 KOG3616 Selective LIM binding 98.5 5.8E-05 1.2E-09 70.0 22.9 294 36-380 612-932 (1636)
128 PRK15359 type III secretion sy 98.5 1.3E-05 2.8E-10 61.5 15.2 90 188-279 31-120 (144)
129 KOG3060 Uncharacterized conser 98.5 0.00011 2.5E-09 59.4 20.6 186 54-244 27-219 (289)
130 KOG2053 Mitochondrial inherita 98.5 0.0016 3.5E-08 62.1 30.4 233 41-283 12-258 (932)
131 KOG2053 Mitochondrial inherita 98.4 0.0018 4E-08 61.8 30.2 226 85-317 19-257 (932)
132 KOG1914 mRNA cleavage and poly 98.4 0.0012 2.6E-08 59.5 27.0 321 71-398 16-480 (656)
133 TIGR02552 LcrH_SycD type III s 98.4 2.1E-05 4.4E-10 59.8 14.5 97 111-210 18-114 (135)
134 KOG3617 WD40 and TPR repeat-co 98.4 9.6E-05 2.1E-09 69.4 20.7 258 74-382 725-993 (1416)
135 KOG3060 Uncharacterized conser 98.4 0.00038 8.2E-09 56.5 21.2 186 90-280 27-220 (289)
136 TIGR02552 LcrH_SycD type III s 98.4 2.2E-05 4.8E-10 59.7 14.2 94 254-349 20-113 (135)
137 KOG1127 TPR repeat-containing 98.3 0.00016 3.4E-09 69.5 21.1 333 51-394 504-888 (1238)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.8E-05 8.3E-10 68.4 15.7 122 256-383 174-295 (395)
139 KOG1127 TPR repeat-containing 98.3 0.00077 1.7E-08 64.9 24.0 184 91-279 474-658 (1238)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.9E-05 8.5E-10 68.3 15.0 128 74-209 168-296 (395)
141 PF10037 MRP-S27: Mitochondria 98.2 3.5E-05 7.6E-10 68.9 13.3 123 177-299 62-186 (429)
142 PF09976 TPR_21: Tetratricopep 98.2 8.9E-05 1.9E-09 57.0 14.1 20 190-209 57-76 (145)
143 TIGR00756 PPR pentatricopeptid 98.2 2.6E-06 5.7E-11 47.4 4.2 33 183-215 2-34 (35)
144 TIGR00756 PPR pentatricopeptid 98.2 2.7E-06 5.8E-11 47.4 4.2 31 254-284 3-33 (35)
145 TIGR02795 tol_pal_ybgF tol-pal 98.2 9.1E-05 2E-09 54.7 13.7 108 288-395 4-115 (119)
146 PF09976 TPR_21: Tetratricopep 98.2 0.00013 2.9E-09 56.1 14.8 85 118-205 56-142 (145)
147 PF13812 PPR_3: Pentatricopept 98.2 3.5E-06 7.6E-11 46.6 4.2 31 288-318 3-33 (34)
148 PF08579 RPM2: Mitochondrial r 98.2 3.1E-05 6.8E-10 54.4 9.5 75 223-297 32-115 (120)
149 PF10037 MRP-S27: Mitochondria 98.1 5.1E-05 1.1E-09 67.9 12.9 125 210-334 60-186 (429)
150 PF13812 PPR_3: Pentatricopept 98.1 4.7E-06 1E-10 46.0 4.2 33 252-284 2-34 (34)
151 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00038 8.1E-09 51.4 13.3 96 115-210 7-105 (119)
152 PF08579 RPM2: Mitochondrial r 98.0 0.00018 3.8E-09 50.7 10.1 76 293-368 32-116 (120)
153 PF05843 Suf: Suppressor of fo 98.0 0.00042 9E-09 59.7 14.9 130 253-385 3-136 (280)
154 cd00189 TPR Tetratricopeptide 97.9 0.00021 4.6E-09 49.9 11.0 90 116-208 6-95 (100)
155 PF14938 SNAP: Soluble NSF att 97.9 0.0023 4.9E-08 55.4 19.0 61 289-349 158-224 (282)
156 cd00189 TPR Tetratricopeptide 97.9 0.00024 5.2E-09 49.6 10.9 91 292-384 6-96 (100)
157 PF14938 SNAP: Soluble NSF att 97.9 0.0044 9.5E-08 53.6 20.1 93 222-315 120-225 (282)
158 PF06239 ECSIT: Evolutionarily 97.9 0.0004 8.7E-09 55.3 12.0 86 214-299 45-151 (228)
159 PF01535 PPR: PPR repeat; Int 97.9 1.9E-05 4E-10 42.5 3.2 29 183-211 2-30 (31)
160 PF04840 Vps16_C: Vps16, C-ter 97.9 0.016 3.4E-07 50.7 24.7 107 252-378 178-284 (319)
161 PF01535 PPR: PPR repeat; Int 97.9 2.6E-05 5.5E-10 41.9 3.7 26 254-279 3-28 (31)
162 PF05843 Suf: Suppressor of fo 97.9 0.00041 8.9E-09 59.7 12.9 133 76-210 2-136 (280)
163 PRK15363 pathogenicity island 97.8 0.00097 2.1E-08 50.7 13.1 95 79-175 39-133 (157)
164 PRK02603 photosystem I assembl 97.8 0.0016 3.6E-08 51.6 15.3 61 184-244 38-100 (172)
165 PRK10866 outer membrane biogen 97.8 0.0082 1.8E-07 50.4 20.0 58 326-383 180-239 (243)
166 PF12895 Apc3: Anaphase-promot 97.8 3.5E-05 7.5E-10 53.0 4.8 80 300-381 3-83 (84)
167 PLN03088 SGT1, suppressor of 97.8 0.00079 1.7E-08 60.2 14.4 93 257-351 8-100 (356)
168 CHL00033 ycf3 photosystem I as 97.8 0.00097 2.1E-08 52.7 13.2 61 184-244 38-100 (168)
169 COG4700 Uncharacterized protei 97.8 0.0047 1E-07 47.9 15.9 160 42-207 59-219 (251)
170 PRK10866 outer membrane biogen 97.8 0.018 3.8E-07 48.5 22.9 57 291-347 180-238 (243)
171 PF12895 Apc3: Anaphase-promot 97.8 0.00012 2.6E-09 50.3 6.7 81 123-206 2-83 (84)
172 PLN03088 SGT1, suppressor of 97.8 0.00081 1.7E-08 60.1 13.7 91 82-174 9-99 (356)
173 PRK02603 photosystem I assembl 97.8 0.0028 6.1E-08 50.3 15.3 87 111-199 36-124 (172)
174 KOG0550 Molecular chaperone (D 97.7 0.0039 8.4E-08 54.5 16.5 257 85-350 59-350 (486)
175 KOG0553 TPR repeat-containing 97.7 0.00044 9.6E-09 57.6 10.6 100 260-364 90-190 (304)
176 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.03 6.6E-07 49.7 30.1 83 72-157 39-121 (660)
177 PRK15363 pathogenicity island 97.7 0.0015 3.3E-08 49.6 12.3 87 225-313 44-130 (157)
178 PF14559 TPR_19: Tetratricopep 97.7 0.00029 6.2E-09 46.1 7.7 63 121-187 2-64 (68)
179 CHL00033 ycf3 photosystem I as 97.7 0.0025 5.5E-08 50.4 13.9 60 290-349 39-100 (168)
180 PF06239 ECSIT: Evolutionarily 97.7 0.0019 4.2E-08 51.5 12.7 72 195-266 66-153 (228)
181 KOG2280 Vacuolar assembly/sort 97.7 0.057 1.2E-06 51.1 24.0 319 40-381 438-795 (829)
182 KOG2796 Uncharacterized conser 97.6 0.0051 1.1E-07 50.5 14.9 221 12-255 96-323 (366)
183 PRK10153 DNA-binding transcrip 97.6 0.0057 1.2E-07 57.3 17.2 144 140-290 332-490 (517)
184 PF04840 Vps16_C: Vps16, C-ter 97.6 0.043 9.3E-07 48.0 26.3 111 217-347 178-288 (319)
185 PF12688 TPR_5: Tetratrico pep 97.6 0.0035 7.7E-08 45.9 12.4 90 259-348 9-102 (120)
186 PF13432 TPR_16: Tetratricopep 97.6 0.00043 9.3E-09 44.8 6.9 60 328-388 4-63 (65)
187 PRK10153 DNA-binding transcrip 97.6 0.0091 2E-07 56.0 17.8 142 177-324 333-489 (517)
188 COG4700 Uncharacterized protei 97.5 0.026 5.6E-07 43.9 17.8 126 213-342 86-214 (251)
189 KOG2041 WD40 repeat protein [G 97.5 0.032 7E-07 52.3 20.1 239 72-349 689-951 (1189)
190 COG4235 Cytochrome c biogenesi 97.5 0.0088 1.9E-07 50.3 15.0 104 285-390 155-261 (287)
191 PF12688 TPR_5: Tetratrico pep 97.5 0.0083 1.8E-07 43.9 13.2 92 115-209 6-103 (120)
192 PF13432 TPR_16: Tetratricopep 97.5 0.00073 1.6E-08 43.7 7.1 57 117-174 4-60 (65)
193 PF14559 TPR_19: Tetratricopep 97.5 0.00029 6.3E-09 46.1 5.1 56 333-389 3-58 (68)
194 KOG0553 TPR repeat-containing 97.4 0.0022 4.9E-08 53.6 10.8 100 120-225 91-191 (304)
195 PF13525 YfiO: Outer membrane 97.4 0.024 5.1E-07 46.3 16.9 49 327-375 147-197 (203)
196 PF13414 TPR_11: TPR repeat; P 97.4 0.00078 1.7E-08 44.1 6.6 63 321-384 3-66 (69)
197 PRK10803 tol-pal system protei 97.3 0.0097 2.1E-07 50.5 13.7 97 254-350 146-246 (263)
198 PF03704 BTAD: Bacterial trans 97.3 0.0079 1.7E-07 46.2 12.1 55 116-171 68-122 (146)
199 PF13525 YfiO: Outer membrane 97.3 0.071 1.5E-06 43.6 18.3 54 85-138 15-70 (203)
200 KOG1130 Predicted G-alpha GTPa 97.2 0.0046 1E-07 54.0 10.7 133 217-349 196-343 (639)
201 COG4235 Cytochrome c biogenesi 97.2 0.023 4.9E-07 48.0 14.5 101 178-280 153-256 (287)
202 KOG1130 Predicted G-alpha GTPa 97.2 0.0077 1.7E-07 52.7 11.7 133 252-384 196-343 (639)
203 PRK10803 tol-pal system protei 97.2 0.0091 2E-07 50.6 12.1 86 227-314 154-245 (263)
204 KOG0550 Molecular chaperone (D 97.2 0.089 1.9E-06 46.4 17.9 319 54-384 64-422 (486)
205 PF12921 ATP13: Mitochondrial 97.2 0.0092 2E-07 44.2 10.5 55 139-193 46-100 (126)
206 COG3898 Uncharacterized membra 97.1 0.15 3.3E-06 44.6 29.6 25 183-207 190-214 (531)
207 PF13281 DUF4071: Domain of un 97.1 0.17 3.7E-06 44.9 19.4 166 183-350 143-334 (374)
208 PF13414 TPR_11: TPR repeat; P 97.1 0.0032 6.9E-08 41.1 6.9 58 113-171 6-64 (69)
209 PF13371 TPR_9: Tetratricopept 97.1 0.0046 1E-07 40.9 7.7 57 330-387 4-60 (73)
210 PF13371 TPR_9: Tetratricopept 97.0 0.0062 1.3E-07 40.3 7.8 55 119-174 4-58 (73)
211 KOG2041 WD40 repeat protein [G 97.0 0.33 7.1E-06 46.0 22.3 117 40-170 761-877 (1189)
212 PF13281 DUF4071: Domain of un 97.0 0.23 5E-06 44.1 20.4 168 146-315 142-334 (374)
213 PF12921 ATP13: Mitochondrial 97.0 0.014 3E-07 43.2 10.0 87 285-371 1-103 (126)
214 PF04053 Coatomer_WDAD: Coatom 97.0 0.037 8.1E-07 50.7 14.6 74 121-210 329-402 (443)
215 PF03704 BTAD: Bacterial trans 96.9 0.015 3.3E-07 44.7 9.9 69 148-218 65-138 (146)
216 COG3898 Uncharacterized membra 96.8 0.3 6.5E-06 42.9 30.9 284 53-350 98-392 (531)
217 PRK15331 chaperone protein Sic 96.8 0.06 1.3E-06 41.4 12.4 86 262-349 48-133 (165)
218 PF04053 Coatomer_WDAD: Coatom 96.8 0.069 1.5E-06 49.0 14.9 158 84-276 270-427 (443)
219 KOG2280 Vacuolar assembly/sort 96.8 0.36 7.8E-06 46.0 19.3 250 75-346 507-795 (829)
220 PF09205 DUF1955: Domain of un 96.8 0.13 2.8E-06 37.7 13.1 138 120-283 12-152 (161)
221 PF13170 DUF4003: Protein of u 96.7 0.26 5.7E-06 42.6 17.4 132 126-259 78-225 (297)
222 KOG2796 Uncharacterized conser 96.7 0.27 5.8E-06 40.8 23.2 130 185-315 181-315 (366)
223 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.42 9.2E-06 42.8 19.4 129 217-349 398-530 (660)
224 PF10300 DUF3808: Protein of u 96.7 0.24 5.1E-06 46.2 17.7 178 201-385 177-376 (468)
225 COG1729 Uncharacterized protei 96.6 0.11 2.4E-06 43.4 13.7 101 289-390 145-249 (262)
226 PF13428 TPR_14: Tetratricopep 96.6 0.0078 1.7E-07 35.2 5.2 42 357-398 2-43 (44)
227 PF08631 SPO22: Meiosis protei 96.6 0.4 8.7E-06 41.4 25.5 163 218-383 86-273 (278)
228 PF13424 TPR_12: Tetratricopep 96.5 0.0065 1.4E-07 40.8 5.1 61 323-383 7-73 (78)
229 PRK15331 chaperone protein Sic 96.5 0.27 5.9E-06 37.9 14.4 89 225-315 46-134 (165)
230 PF04184 ST7: ST7 protein; In 96.4 0.2 4.4E-06 45.5 14.9 166 43-223 172-338 (539)
231 KOG1538 Uncharacterized conser 96.4 0.54 1.2E-05 44.1 17.7 199 132-350 622-846 (1081)
232 PF13424 TPR_12: Tetratricopep 96.4 0.018 3.8E-07 38.7 6.7 24 148-171 8-31 (78)
233 KOG1585 Protein required for f 96.4 0.43 9.2E-06 39.2 17.1 207 75-309 31-250 (308)
234 KOG3941 Intermediate in Toll s 96.4 0.03 6.6E-07 46.6 8.8 68 127-195 89-172 (406)
235 smart00299 CLH Clathrin heavy 96.3 0.31 6.7E-06 37.0 15.4 84 221-312 12-95 (140)
236 PF09205 DUF1955: Domain of un 96.3 0.26 5.7E-06 36.2 14.0 61 290-351 90-150 (161)
237 KOG2114 Vacuolar assembly/sort 96.3 0.38 8.3E-06 46.4 16.5 180 112-313 336-517 (933)
238 PF10300 DUF3808: Protein of u 96.3 0.22 4.8E-06 46.4 15.1 165 77-244 190-375 (468)
239 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.18 3.9E-06 45.6 13.6 67 106-173 71-140 (453)
240 PF07163 Pex26: Pex26 protein; 96.3 0.13 2.8E-06 42.9 11.8 132 37-168 33-181 (309)
241 KOG1538 Uncharacterized conser 96.2 0.46 9.9E-06 44.6 15.8 215 78-315 601-846 (1081)
242 PF08631 SPO22: Meiosis protei 96.1 0.77 1.7E-05 39.6 23.8 18 330-347 255-272 (278)
243 COG3118 Thioredoxin domain-con 96.0 0.43 9.3E-06 40.4 14.0 148 117-268 141-289 (304)
244 COG4105 ComL DNA uptake lipopr 96.0 0.76 1.6E-05 38.2 20.6 71 192-262 45-117 (254)
245 smart00299 CLH Clathrin heavy 96.0 0.5 1.1E-05 35.9 14.7 7 55-61 23-29 (140)
246 PF13512 TPR_18: Tetratricopep 95.9 0.41 8.9E-06 36.0 12.2 73 260-332 19-93 (142)
247 KOG3941 Intermediate in Toll s 95.9 0.074 1.6E-06 44.4 9.0 89 178-266 64-173 (406)
248 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.17 3.7E-06 45.7 11.9 65 74-139 74-141 (453)
249 KOG2610 Uncharacterized conser 95.9 0.22 4.8E-06 42.7 11.8 154 121-278 114-274 (491)
250 KOG0543 FKBP-type peptidyl-pro 95.8 0.29 6.2E-06 43.3 12.6 89 83-172 216-318 (397)
251 PF02259 FAT: FAT domain; Int 95.8 1.3 2.9E-05 39.6 19.7 52 117-172 5-56 (352)
252 KOG1585 Protein required for f 95.7 0.93 2E-05 37.3 17.1 207 111-345 32-251 (308)
253 KOG2114 Vacuolar assembly/sort 95.7 2.2 4.8E-05 41.6 22.8 121 42-171 337-457 (933)
254 COG1729 Uncharacterized protei 95.7 0.18 3.9E-06 42.1 10.5 89 122-210 153-244 (262)
255 KOG1920 IkappaB kinase complex 95.6 2.4 5.2E-05 43.0 19.0 102 226-347 949-1052(1265)
256 COG2909 MalT ATP-dependent tra 95.6 2.6 5.6E-05 41.5 22.3 229 115-346 420-684 (894)
257 KOG0543 FKBP-type peptidyl-pro 95.6 0.27 5.8E-06 43.4 11.6 127 257-385 214-355 (397)
258 COG0457 NrfG FOG: TPR repeat [ 95.5 1.1 2.5E-05 36.7 29.2 225 123-349 36-264 (291)
259 COG4649 Uncharacterized protei 95.5 0.89 1.9E-05 35.3 15.5 131 41-173 61-195 (221)
260 PRK11906 transcriptional regul 95.4 1.1 2.4E-05 40.7 15.0 116 54-171 273-398 (458)
261 COG3118 Thioredoxin domain-con 95.4 1.5 3.3E-05 37.3 17.8 151 152-307 141-293 (304)
262 KOG1550 Extracellular protein 95.4 2 4.4E-05 41.2 17.8 182 161-351 228-427 (552)
263 PF13428 TPR_14: Tetratricopep 95.3 0.069 1.5E-06 31.1 5.1 37 113-150 4-40 (44)
264 KOG1941 Acetylcholine receptor 95.2 0.63 1.4E-05 40.6 12.2 54 187-240 128-186 (518)
265 KOG2610 Uncharacterized conser 95.1 0.85 1.8E-05 39.4 12.6 153 193-348 115-274 (491)
266 PF13512 TPR_18: Tetratricopep 95.0 0.72 1.6E-05 34.7 10.8 77 81-157 16-94 (142)
267 PF07035 Mic1: Colon cancer-as 95.0 1.3 2.8E-05 34.5 14.8 23 254-276 92-114 (167)
268 PF07079 DUF1347: Protein of u 95.0 2.7 6E-05 38.0 25.7 278 85-385 16-327 (549)
269 cd00923 Cyt_c_Oxidase_Va Cytoc 94.8 0.57 1.2E-05 32.3 8.8 45 304-348 25-69 (103)
270 COG3629 DnrI DNA-binding trans 94.7 0.48 1E-05 40.3 10.3 80 145-226 153-237 (280)
271 COG3629 DnrI DNA-binding trans 94.6 0.47 1E-05 40.3 10.0 80 182-262 154-238 (280)
272 COG1747 Uncharacterized N-term 94.5 3.9 8.4E-05 37.7 22.6 166 179-351 64-235 (711)
273 PF13170 DUF4003: Protein of u 94.4 3.1 6.7E-05 36.2 21.3 133 197-331 78-227 (297)
274 KOG4555 TPR repeat-containing 94.4 0.98 2.1E-05 33.2 9.7 52 192-244 54-105 (175)
275 PF02284 COX5A: Cytochrome c o 94.3 0.35 7.6E-06 33.7 7.0 45 305-349 29-73 (108)
276 KOG1941 Acetylcholine receptor 94.3 2.4 5.1E-05 37.2 13.4 225 123-348 19-273 (518)
277 PF13929 mRNA_stabil: mRNA sta 94.3 2.8 6E-05 35.7 13.6 184 40-227 94-289 (292)
278 KOG4555 TPR repeat-containing 94.2 1.7 3.6E-05 32.1 11.1 92 119-211 52-145 (175)
279 PF10602 RPN7: 26S proteasome 94.1 0.94 2E-05 36.0 10.3 98 288-385 38-142 (177)
280 COG4105 ComL DNA uptake lipopr 94.1 3 6.5E-05 34.8 22.7 55 292-347 173-230 (254)
281 KOG4570 Uncharacterized conser 94.0 0.46 9.9E-06 40.5 8.5 105 245-351 58-165 (418)
282 PF13929 mRNA_stabil: mRNA sta 93.7 3.9 8.4E-05 34.9 14.9 132 161-292 144-284 (292)
283 COG0457 NrfG FOG: TPR repeat [ 93.7 3.2 7E-05 33.8 28.8 200 111-315 60-265 (291)
284 PF04184 ST7: ST7 protein; In 93.7 2.9 6.3E-05 38.4 13.4 61 290-350 263-324 (539)
285 KOG4570 Uncharacterized conser 93.6 1.3 2.8E-05 37.9 10.5 129 186-316 24-165 (418)
286 KOG2396 HAT (Half-A-TPR) repea 93.6 5.9 0.00013 36.4 30.6 92 54-149 86-178 (568)
287 PRK11906 transcriptional regul 93.3 6.4 0.00014 36.1 16.3 147 232-382 274-433 (458)
288 KOG1920 IkappaB kinase complex 93.2 11 0.00024 38.6 20.6 86 254-349 942-1027(1265)
289 KOG1258 mRNA processing protei 93.2 7.7 0.00017 36.5 30.0 118 53-173 59-179 (577)
290 KOG0890 Protein kinase of the 93.1 17 0.00037 40.4 23.5 314 51-389 1395-1735(2382)
291 PF07079 DUF1347: Protein of u 93.0 6.9 0.00015 35.6 31.5 122 267-395 396-530 (549)
292 KOG1550 Extracellular protein 92.7 9.8 0.00021 36.6 25.0 13 372-384 525-537 (552)
293 PF09613 HrpB1_HrpK: Bacterial 92.6 3.8 8.3E-05 31.6 13.1 48 88-137 23-71 (160)
294 KOG4234 TPR repeat-containing 92.6 1.6 3.4E-05 34.9 8.9 91 259-351 103-198 (271)
295 PF10602 RPN7: 26S proteasome 92.4 3.3 7.2E-05 32.9 11.0 62 76-137 37-100 (177)
296 TIGR02561 HrpB1_HrpK type III 92.3 2.8 6E-05 31.8 9.6 52 87-140 22-74 (153)
297 PF13176 TPR_7: Tetratricopept 92.2 0.37 8.1E-06 26.5 3.9 22 185-206 3-24 (36)
298 COG4649 Uncharacterized protei 92.2 4.6 0.0001 31.5 14.5 133 217-350 60-196 (221)
299 PF13176 TPR_7: Tetratricopept 92.1 0.37 8.1E-06 26.5 3.9 26 358-383 1-26 (36)
300 PF07719 TPR_2: Tetratricopept 92.0 0.56 1.2E-05 25.0 4.6 29 358-386 3-31 (34)
301 PF09613 HrpB1_HrpK: Bacterial 92.0 4.6 9.9E-05 31.2 12.8 112 118-237 18-130 (160)
302 COG2909 MalT ATP-dependent tra 91.7 15 0.00033 36.5 27.4 226 155-381 425-684 (894)
303 COG1747 Uncharacterized N-term 91.5 12 0.00025 34.8 19.8 181 142-331 63-249 (711)
304 PF13431 TPR_17: Tetratricopep 91.3 0.31 6.6E-06 26.5 2.9 23 142-164 10-32 (34)
305 PF11207 DUF2989: Protein of u 91.3 2.8 6E-05 33.7 9.2 81 120-202 117-199 (203)
306 PF13431 TPR_17: Tetratricopep 91.2 0.27 5.9E-06 26.7 2.6 31 345-376 3-33 (34)
307 PF10345 Cohesin_load: Cohesin 91.2 16 0.00034 35.8 29.5 167 75-242 59-251 (608)
308 COG3947 Response regulator con 90.9 9.4 0.0002 32.6 15.4 70 254-324 282-356 (361)
309 KOG4648 Uncharacterized conser 90.5 1.4 3E-05 38.2 7.3 54 259-314 105-159 (536)
310 TIGR02561 HrpB1_HrpK type III 90.3 6.5 0.00014 29.9 11.9 52 121-174 21-73 (153)
311 PF00515 TPR_1: Tetratricopept 90.3 0.73 1.6E-05 24.7 3.9 28 358-385 3-30 (34)
312 KOG0276 Vesicle coat complex C 90.2 12 0.00027 35.4 13.3 44 157-207 649-692 (794)
313 PF13174 TPR_6: Tetratricopept 90.0 0.62 1.3E-05 24.6 3.4 28 361-388 5-32 (33)
314 PF11207 DUF2989: Protein of u 89.8 4.2 9.1E-05 32.7 9.0 71 304-375 124-197 (203)
315 PF02284 COX5A: Cytochrome c o 89.8 5.4 0.00012 28.0 8.7 59 339-397 28-86 (108)
316 KOG0276 Vesicle coat complex C 89.5 9.2 0.0002 36.1 12.0 133 76-242 615-747 (794)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 89.4 3.8 8.2E-05 28.4 7.3 48 266-313 22-69 (103)
318 PF00637 Clathrin: Region in C 89.0 0.18 4E-06 38.4 1.0 84 257-347 13-96 (143)
319 KOG0687 26S proteasome regulat 88.9 15 0.00032 32.0 13.9 97 287-385 105-210 (393)
320 KOG4077 Cytochrome c oxidase, 88.8 3 6.5E-05 30.4 6.8 47 304-350 67-113 (149)
321 PF07035 Mic1: Colon cancer-as 88.5 10 0.00022 29.7 15.5 136 130-280 14-149 (167)
322 PF13374 TPR_10: Tetratricopep 87.7 1.5 3.2E-05 24.6 4.2 28 357-384 3-30 (42)
323 PRK09687 putative lyase; Provi 87.5 18 0.00039 31.3 29.0 17 144-160 67-83 (280)
324 PF00637 Clathrin: Region in C 87.0 0.34 7.4E-06 36.9 1.4 52 189-240 15-66 (143)
325 PF00515 TPR_1: Tetratricopept 86.8 2.4 5.2E-05 22.6 4.5 18 152-169 8-25 (34)
326 PF13374 TPR_10: Tetratricopep 86.8 1.9 4E-05 24.2 4.2 25 183-207 4-28 (42)
327 PRK15180 Vi polysaccharide bio 86.7 12 0.00025 34.5 10.7 87 297-385 334-420 (831)
328 KOG2063 Vacuolar assembly/sort 86.6 39 0.00084 34.2 16.1 37 261-297 601-637 (877)
329 COG3947 Response regulator con 86.4 20 0.00043 30.7 12.2 57 149-207 283-339 (361)
330 PF13181 TPR_8: Tetratricopept 85.9 2 4.3E-05 22.8 3.8 27 358-384 3-29 (34)
331 PF07719 TPR_2: Tetratricopept 85.6 3 6.4E-05 22.0 4.5 18 153-170 9-26 (34)
332 KOG1258 mRNA processing protei 85.6 34 0.00073 32.5 26.5 310 70-386 40-396 (577)
333 PF07163 Pex26: Pex26 protein; 85.1 23 0.0005 30.2 12.5 92 112-204 85-181 (309)
334 KOG1464 COP9 signalosome, subu 84.8 23 0.0005 30.0 19.7 48 90-137 42-92 (440)
335 KOG2471 TPR repeat-containing 84.7 17 0.00037 33.5 10.7 36 365-400 344-379 (696)
336 PRK11619 lytic murein transgly 84.6 43 0.00093 33.0 28.0 324 39-384 34-374 (644)
337 PRK09687 putative lyase; Provi 84.5 26 0.00056 30.3 28.6 235 142-401 34-278 (280)
338 COG4785 NlpI Lipoprotein NlpI, 84.0 22 0.00048 29.1 13.8 61 110-171 99-159 (297)
339 PF04097 Nic96: Nup93/Nic96; 83.9 46 0.00099 32.6 16.5 86 225-315 267-356 (613)
340 smart00386 HAT HAT (Half-A-TPR 82.8 3.2 7E-05 21.5 3.8 29 370-398 1-29 (33)
341 COG4455 ImpE Protein of avirul 82.3 13 0.00029 30.3 8.2 77 253-330 3-81 (273)
342 COG4455 ImpE Protein of avirul 82.2 10 0.00022 31.0 7.6 78 288-366 3-82 (273)
343 KOG2066 Vacuolar assembly/sort 81.8 56 0.0012 32.2 23.9 106 45-157 362-467 (846)
344 KOG4234 TPR repeat-containing 81.6 15 0.00033 29.6 8.2 87 120-210 105-197 (271)
345 PF13174 TPR_6: Tetratricopept 81.5 2.8 6.1E-05 21.9 3.2 18 154-171 9-26 (33)
346 PF08424 NRDE-2: NRDE-2, neces 81.0 39 0.00085 29.9 13.0 78 92-171 48-128 (321)
347 PRK15180 Vi polysaccharide bio 80.9 47 0.001 30.8 14.7 120 122-246 301-421 (831)
348 PF13181 TPR_8: Tetratricopept 80.6 5.7 0.00012 20.9 4.3 25 113-137 4-28 (34)
349 PF07721 TPR_4: Tetratricopept 80.3 2.6 5.7E-05 21.0 2.6 20 361-380 6-25 (26)
350 PRK10941 hypothetical protein; 80.3 35 0.00076 29.3 10.8 75 149-225 185-260 (269)
351 TIGR03504 FimV_Cterm FimV C-te 79.9 4.7 0.0001 23.4 3.8 23 187-209 5-27 (44)
352 COG2976 Uncharacterized protei 79.9 30 0.00064 27.8 12.7 54 225-280 135-188 (207)
353 PF10345 Cohesin_load: Cohesin 79.5 66 0.0014 31.6 28.3 195 73-277 28-251 (608)
354 COG4785 NlpI Lipoprotein NlpI, 78.9 35 0.00075 28.0 15.5 160 181-351 99-267 (297)
355 TIGR03504 FimV_Cterm FimV C-te 78.4 5.3 0.00012 23.2 3.7 16 331-346 9-24 (44)
356 PF11846 DUF3366: Domain of un 78.4 15 0.00032 29.7 7.8 35 353-387 141-175 (193)
357 PF14669 Asp_Glu_race_2: Putat 78.2 33 0.00072 27.4 13.4 56 326-381 137-206 (233)
358 KOG2063 Vacuolar assembly/sort 78.0 84 0.0018 32.0 19.3 38 190-227 600-637 (877)
359 KOG0686 COP9 signalosome, subu 77.5 55 0.0012 29.6 13.7 62 183-244 152-215 (466)
360 COG0790 FOG: TPR repeat, SEL1 76.2 51 0.0011 28.5 21.7 46 269-317 173-222 (292)
361 COG2976 Uncharacterized protei 76.1 39 0.00085 27.2 15.2 88 153-246 97-189 (207)
362 PF11838 ERAP1_C: ERAP1-like C 75.4 57 0.0012 28.7 19.4 80 198-280 147-230 (324)
363 PF13762 MNE1: Mitochondrial s 75.3 34 0.00073 26.1 9.8 82 148-229 42-128 (145)
364 PF10579 Rapsyn_N: Rapsyn N-te 75.2 6.6 0.00014 26.1 3.9 46 333-378 18-65 (80)
365 PF06552 TOM20_plant: Plant sp 75.0 39 0.00084 26.8 8.7 41 198-246 97-137 (186)
366 smart00028 TPR Tetratricopepti 74.7 6.1 0.00013 19.7 3.4 24 360-383 5-28 (34)
367 PHA02875 ankyrin repeat protei 74.7 70 0.0015 29.4 12.9 209 118-357 7-231 (413)
368 PF10579 Rapsyn_N: Rapsyn N-te 73.0 16 0.00034 24.4 5.2 45 263-307 18-64 (80)
369 PF11846 DUF3366: Domain of un 72.4 20 0.00043 28.9 7.1 32 178-209 141-172 (193)
370 COG5187 RPN7 26S proteasome re 72.4 63 0.0014 27.8 12.8 169 198-370 55-241 (412)
371 KOG4648 Uncharacterized conser 72.1 26 0.00056 30.8 7.7 88 153-244 105-193 (536)
372 TIGR02508 type_III_yscG type I 71.9 32 0.00069 24.2 9.0 51 154-211 48-98 (115)
373 KOG4521 Nuclear pore complex, 71.5 1.4E+02 0.003 31.4 14.6 156 225-382 929-1128(1480)
374 PRK10941 hypothetical protein; 71.4 43 0.00093 28.7 9.0 60 289-350 184-244 (269)
375 KOG4507 Uncharacterized conser 70.9 36 0.00077 32.4 8.8 87 228-315 619-705 (886)
376 KOG1464 COP9 signalosome, subu 69.9 69 0.0015 27.3 21.8 250 54-311 42-328 (440)
377 PF00244 14-3-3: 14-3-3 protei 69.9 58 0.0013 27.3 9.4 78 303-395 143-230 (236)
378 PF08424 NRDE-2: NRDE-2, neces 69.6 81 0.0018 27.9 17.3 115 269-385 49-183 (321)
379 PF09986 DUF2225: Uncharacteri 69.4 63 0.0014 26.6 9.4 64 111-174 119-194 (214)
380 KOG3807 Predicted membrane pro 69.3 80 0.0017 27.8 12.1 65 149-213 279-343 (556)
381 KOG1586 Protein required for f 69.3 66 0.0014 26.8 16.1 94 228-321 85-189 (288)
382 PF06552 TOM20_plant: Plant sp 69.3 43 0.00094 26.6 7.8 14 283-296 110-123 (186)
383 PF07575 Nucleopor_Nup85: Nup8 68.7 1.2E+02 0.0026 29.5 18.4 92 254-349 375-466 (566)
384 KOG4642 Chaperone-dependent E3 68.6 55 0.0012 27.4 8.5 120 260-383 19-144 (284)
385 COG5159 RPN6 26S proteasome re 68.5 77 0.0017 27.3 12.8 55 186-240 8-69 (421)
386 PF14689 SPOB_a: Sensor_kinase 67.9 14 0.0003 23.3 4.1 30 355-384 22-51 (62)
387 PF13762 MNE1: Mitochondrial s 67.8 52 0.0011 25.1 10.7 79 219-297 42-126 (145)
388 COG0735 Fur Fe2+/Zn2+ uptake r 67.2 36 0.00079 26.0 7.1 60 240-300 10-69 (145)
389 PF04762 IKI3: IKI3 family; I 67.2 1.3E+02 0.0027 31.4 12.8 220 35-276 690-926 (928)
390 COG0735 Fur Fe2+/Zn2+ uptake r 67.0 40 0.00087 25.7 7.3 49 274-323 9-57 (145)
391 KOG2582 COP9 signalosome, subu 66.8 96 0.0021 27.7 16.2 19 191-209 193-211 (422)
392 KOG4507 Uncharacterized conser 66.3 27 0.00058 33.2 7.1 99 298-397 619-717 (886)
393 PF11848 DUF3368: Domain of un 66.1 25 0.00054 20.8 4.9 31 193-223 14-44 (48)
394 COG5159 RPN6 26S proteasome re 65.6 89 0.0019 26.9 14.7 199 150-349 8-234 (421)
395 PF14689 SPOB_a: Sensor_kinase 65.3 21 0.00046 22.5 4.6 21 187-207 29-49 (62)
396 KOG2659 LisH motif-containing 65.2 79 0.0017 26.2 8.8 59 44-102 32-91 (228)
397 cd00280 TRFH Telomeric Repeat 64.6 46 0.001 26.5 7.1 67 91-160 85-158 (200)
398 PRK10564 maltose regulon perip 64.3 19 0.00041 31.1 5.4 35 109-143 256-290 (303)
399 PF13934 ELYS: Nuclear pore co 64.1 79 0.0017 26.3 9.1 93 33-132 102-198 (226)
400 COG5108 RPO41 Mitochondrial DN 63.7 44 0.00096 32.3 8.0 91 256-349 33-131 (1117)
401 PRK10564 maltose regulon perip 63.5 19 0.00042 31.0 5.4 42 178-219 253-295 (303)
402 PF11848 DUF3368: Domain of un 61.2 32 0.00069 20.3 5.1 34 120-153 12-45 (48)
403 PF10475 DUF2450: Protein of u 60.8 89 0.0019 27.2 9.2 155 222-390 104-266 (291)
404 cd08819 CARD_MDA5_2 Caspase ac 60.6 51 0.0011 22.5 6.9 36 298-338 48-83 (88)
405 KOG2062 26S proteasome regulat 60.6 1.8E+02 0.004 28.9 17.7 184 94-280 42-239 (929)
406 KOG3636 Uncharacterized conser 59.7 1.4E+02 0.0031 27.4 10.1 118 35-157 148-272 (669)
407 PF11817 Foie-gras_1: Foie gra 58.8 56 0.0012 27.6 7.5 59 184-242 181-244 (247)
408 PF02259 FAT: FAT domain; Int 58.6 1.3E+02 0.0029 26.6 25.8 66 179-244 144-212 (352)
409 cd08819 CARD_MDA5_2 Caspase ac 58.0 58 0.0013 22.3 7.4 36 333-373 48-83 (88)
410 PF11663 Toxin_YhaV: Toxin wit 58.0 15 0.00032 27.4 3.3 31 193-225 107-137 (140)
411 PF14853 Fis1_TPR_C: Fis1 C-te 57.8 38 0.00083 20.6 4.6 23 328-350 8-30 (53)
412 TIGR02508 type_III_yscG type I 56.5 69 0.0015 22.7 9.0 13 297-309 50-62 (115)
413 KOG2908 26S proteasome regulat 56.4 1.4E+02 0.0031 26.4 9.4 65 257-321 81-155 (380)
414 KOG3364 Membrane protein invol 56.3 85 0.0018 23.7 9.1 66 285-350 31-100 (149)
415 PRK13184 pknD serine/threonine 56.3 2.6E+02 0.0055 29.2 22.6 147 230-384 670-832 (932)
416 KOG4567 GTPase-activating prot 55.5 84 0.0018 27.4 7.7 57 271-332 263-319 (370)
417 PF11817 Foie-gras_1: Foie gra 55.4 74 0.0016 26.9 7.7 62 110-171 178-244 (247)
418 PHA02875 ankyrin repeat protei 55.2 1.7E+02 0.0037 26.9 16.3 15 154-168 74-88 (413)
419 KOG3364 Membrane protein invol 55.1 72 0.0016 24.0 6.3 67 73-139 30-100 (149)
420 PF12862 Apc5: Anaphase-promot 55.0 68 0.0015 22.2 6.5 22 363-384 48-69 (94)
421 KOG4567 GTPase-activating prot 54.9 89 0.0019 27.2 7.7 58 236-298 263-320 (370)
422 PF09670 Cas_Cas02710: CRISPR- 54.7 1.7E+02 0.0037 26.7 11.6 52 120-172 141-196 (379)
423 KOG3677 RNA polymerase I-assoc 54.4 1.2E+02 0.0026 27.7 8.6 91 79-171 205-298 (525)
424 PRK13342 recombination factor 54.3 1.8E+02 0.0039 26.9 19.2 37 299-335 243-279 (413)
425 PF09454 Vps23_core: Vps23 cor 54.0 29 0.00062 22.2 3.7 48 320-368 7-54 (65)
426 PF09477 Type_III_YscG: Bacter 53.8 80 0.0017 22.6 9.0 88 266-361 21-108 (116)
427 PF15297 CKAP2_C: Cytoskeleton 52.8 1.3E+02 0.0028 26.8 8.6 63 303-367 120-186 (353)
428 KOG2422 Uncharacterized conser 52.7 2.2E+02 0.0048 27.4 17.1 93 293-385 349-448 (665)
429 KOG2066 Vacuolar assembly/sort 52.5 2.6E+02 0.0055 28.1 22.7 155 81-244 362-533 (846)
430 KOG0890 Protein kinase of the 52.5 4.2E+02 0.0092 30.6 20.9 150 81-240 1389-1542(2382)
431 KOG0292 Vesicle coat complex C 52.5 2.3E+02 0.005 28.9 10.9 176 53-280 607-782 (1202)
432 PRK09857 putative transposase; 52.3 1.2E+02 0.0026 26.5 8.5 63 256-319 211-273 (292)
433 PF11663 Toxin_YhaV: Toxin wit 52.0 19 0.00041 26.9 3.0 31 228-260 107-137 (140)
434 KOG0686 COP9 signalosome, subu 51.9 1.9E+02 0.0041 26.4 15.1 24 113-136 153-176 (466)
435 PF00244 14-3-3: 14-3-3 protei 51.7 1.4E+02 0.0031 25.0 12.2 59 115-173 6-65 (236)
436 KOG2659 LisH motif-containing 51.7 1.4E+02 0.003 24.8 8.9 99 247-347 22-129 (228)
437 KOG4077 Cytochrome c oxidase, 50.7 1E+02 0.0022 22.9 9.6 52 342-393 70-121 (149)
438 PF12862 Apc5: Anaphase-promot 50.5 82 0.0018 21.7 8.0 21 152-172 48-68 (94)
439 PF07575 Nucleopor_Nup85: Nup8 50.4 58 0.0013 31.6 7.0 58 184-243 408-465 (566)
440 PF09868 DUF2095: Uncharacteri 50.4 84 0.0018 22.6 5.8 40 115-155 66-105 (128)
441 PF04910 Tcf25: Transcriptiona 50.3 2E+02 0.0043 26.1 15.7 92 292-385 109-222 (360)
442 PRK13342 recombination factor 50.2 2.1E+02 0.0046 26.4 18.4 30 194-223 243-272 (413)
443 PRK06645 DNA polymerase III su 49.9 2.4E+02 0.0052 27.0 11.9 47 161-209 189-235 (507)
444 PF04097 Nic96: Nup93/Nic96; 49.9 2.7E+02 0.0058 27.5 14.8 214 115-350 116-356 (613)
445 PF11123 DNA_Packaging_2: DNA 48.4 76 0.0016 20.8 5.6 33 125-158 12-44 (82)
446 COG4259 Uncharacterized protei 48.2 95 0.0021 21.9 5.9 41 95-135 57-97 (121)
447 PF10475 DUF2450: Protein of u 48.2 1.8E+02 0.0039 25.4 9.1 113 151-275 104-221 (291)
448 KOG0376 Serine-threonine phosp 48.1 47 0.001 30.7 5.5 103 258-366 11-115 (476)
449 KOG2034 Vacuolar sorting prote 48.0 3.2E+02 0.0069 27.9 25.5 84 36-135 355-440 (911)
450 KOG2396 HAT (Half-A-TPR) repea 47.9 2.5E+02 0.0054 26.6 24.8 72 325-397 464-537 (568)
451 PRK07003 DNA polymerase III su 47.7 3.2E+02 0.0069 27.8 11.9 47 161-209 180-226 (830)
452 PRK11639 zinc uptake transcrip 47.5 1.4E+02 0.003 23.5 7.6 37 194-230 38-74 (169)
453 PF11838 ERAP1_C: ERAP1-like C 47.4 2E+02 0.0043 25.3 20.2 146 233-383 147-302 (324)
454 PRK12798 chemotaxis protein; R 47.1 2.3E+02 0.005 26.0 20.3 247 24-284 66-328 (421)
455 PF09454 Vps23_core: Vps23 cor 45.8 79 0.0017 20.2 4.9 49 109-158 7-55 (65)
456 KOG4521 Nuclear pore complex, 45.7 4E+02 0.0087 28.3 12.9 128 40-170 984-1127(1480)
457 PF02847 MA3: MA3 domain; Int 45.6 1.1E+02 0.0024 21.8 6.4 21 151-171 8-28 (113)
458 KOG4279 Serine/threonine prote 45.6 3.3E+02 0.0071 27.3 15.6 194 92-315 180-395 (1226)
459 PF10366 Vps39_1: Vacuolar sor 45.5 1.1E+02 0.0024 21.9 7.8 26 254-279 42-67 (108)
460 PRK11639 zinc uptake transcrip 45.4 1.5E+02 0.0032 23.4 7.4 46 256-301 30-75 (169)
461 COG5108 RPO41 Mitochondrial DN 45.0 1.3E+02 0.0028 29.4 7.9 91 291-384 33-131 (1117)
462 PHA02537 M terminase endonucle 45.0 1.8E+02 0.004 24.3 10.4 23 225-247 92-114 (230)
463 PF08311 Mad3_BUB1_I: Mad3/BUB 44.9 1.3E+02 0.0027 22.3 8.7 50 119-170 74-124 (126)
464 PF09670 Cas_Cas02710: CRISPR- 44.9 2.5E+02 0.0053 25.7 11.7 55 225-280 140-198 (379)
465 PF12926 MOZART2: Mitotic-spin 44.7 99 0.0022 21.1 7.7 42 202-243 29-70 (88)
466 PRK09857 putative transposase; 44.7 2.1E+02 0.0046 24.9 9.3 64 291-355 211-274 (292)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 44.7 1.3E+02 0.0028 22.3 10.5 63 70-135 61-124 (126)
468 PRK14958 DNA polymerase III su 43.9 3E+02 0.0065 26.4 12.5 86 162-250 181-279 (509)
469 PRK14963 DNA polymerase III su 43.6 3E+02 0.0065 26.3 10.6 86 161-249 177-274 (504)
470 COG4259 Uncharacterized protei 43.2 1.2E+02 0.0025 21.4 6.7 42 306-347 57-98 (121)
471 KOG2582 COP9 signalosome, subu 43.2 2.5E+02 0.0054 25.3 10.4 218 78-316 105-346 (422)
472 KOG0292 Vesicle coat complex C 42.8 76 0.0017 32.0 6.2 76 44-138 625-700 (1202)
473 PF15297 CKAP2_C: Cytoskeleton 42.8 1.8E+02 0.0038 26.0 7.9 81 77-157 105-187 (353)
474 COG5116 RPN2 26S proteasome re 42.8 2E+02 0.0043 27.6 8.6 27 254-280 211-237 (926)
475 KOG1114 Tripeptidyl peptidase 42.7 4.1E+02 0.0088 27.6 14.5 68 268-335 1213-1281(1304)
476 PF07064 RIC1: RIC1; InterPro 42.3 2.2E+02 0.0047 24.3 15.2 35 35-69 78-112 (258)
477 PRK09462 fur ferric uptake reg 41.9 1.6E+02 0.0034 22.5 7.0 35 196-230 32-66 (148)
478 PF02847 MA3: MA3 domain; Int 41.9 1.2E+02 0.0025 21.7 6.0 17 260-276 11-27 (113)
479 KOG0991 Replication factor C, 41.9 2.1E+02 0.0046 24.1 12.8 35 284-319 237-271 (333)
480 KOG0403 Neoplastic transformat 41.9 2.9E+02 0.0064 25.7 15.6 244 149-402 218-586 (645)
481 PRK09462 fur ferric uptake reg 41.8 1.6E+02 0.0034 22.5 7.5 63 275-338 6-69 (148)
482 PF12926 MOZART2: Mitotic-spin 41.6 1.1E+02 0.0024 20.8 8.4 44 342-385 29-72 (88)
483 PRK14956 DNA polymerase III su 41.4 3.2E+02 0.0069 25.9 12.9 100 162-285 183-282 (484)
484 PF03745 DUF309: Domain of unk 41.1 92 0.002 19.7 5.6 15 88-102 12-26 (62)
485 COG0790 FOG: TPR repeat, SEL1 41.0 2.4E+02 0.0051 24.4 22.1 116 160-282 92-222 (292)
486 PRK08691 DNA polymerase III su 40.5 3.9E+02 0.0085 26.8 12.7 47 161-209 180-226 (709)
487 PF02184 HAT: HAT (Half-A-TPR) 40.3 50 0.0011 17.6 2.7 24 371-395 2-25 (32)
488 KOG4642 Chaperone-dependent E3 39.7 2.3E+02 0.005 23.9 10.6 29 311-339 220-250 (284)
489 KOG0376 Serine-threonine phosp 39.5 59 0.0013 30.1 4.8 101 83-188 12-112 (476)
490 cd07153 Fur_like Ferric uptake 39.3 79 0.0017 22.7 4.8 44 258-301 7-50 (116)
491 PRK13184 pknD serine/threonine 38.7 4.8E+02 0.01 27.3 23.0 91 46-138 482-580 (932)
492 COG2178 Predicted RNA-binding 38.0 2.2E+02 0.0047 23.1 9.7 18 120-137 39-56 (204)
493 cd07153 Fur_like Ferric uptake 37.6 94 0.002 22.3 5.0 49 291-339 5-53 (116)
494 KOG1308 Hsp70-interacting prot 37.4 21 0.00046 31.3 1.6 93 120-216 124-217 (377)
495 PF04910 Tcf25: Transcriptiona 37.0 3.2E+02 0.007 24.7 19.9 57 188-244 110-167 (360)
496 PF14561 TPR_20: Tetratricopep 36.8 1.4E+02 0.003 20.5 7.4 65 106-170 18-83 (90)
497 PF05944 Phage_term_smal: Phag 36.2 1.3E+02 0.0029 22.5 5.4 49 95-143 33-81 (132)
498 KOG1308 Hsp70-interacting prot 36.1 34 0.00073 30.2 2.6 92 156-251 125-217 (377)
499 KOG4814 Uncharacterized conser 35.9 4.4E+02 0.0095 26.0 9.9 87 297-385 365-457 (872)
500 COG5191 Uncharacterized conser 35.8 97 0.0021 27.1 5.2 65 285-350 106-171 (435)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.2e-57 Score=437.94 Aligned_cols=362 Identities=16% Similarity=0.203 Sum_probs=304.0
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHH
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHS 116 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (402)
++...++.+++.+...++.+.|.++|+.+... +..||..+|+.+|.+|++.|++++|.++|++|...+..|+..+|+.+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34556677788888888888888888887665 67788888888888888888888888888888877778888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh-cCCCCCHHHHHHHHHHHHhcC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT-YGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~~ 195 (402)
|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. .|+.||..+|+++|.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 8888888888888888888888888888888888888888888888888888888542 567888888888888888888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 041936 276 EMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355 (402)
Q Consensus 276 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 355 (402)
+|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCCChhhHHHHHhc
Q 041936 356 FTTMKSLVTGLAGASKVSEAKELIGLVKEK-FTKNVDTWNEIEAG 399 (402)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~ 399 (402)
..+|+.++.+|.+.|++++|.+++++|.+. ..||..+|++|+..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888888888888888888888888888775 77888888888754
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-56 Score=436.71 Aligned_cols=362 Identities=18% Similarity=0.267 Sum_probs=336.4
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhcCCCC-------------------------------CCCHHHHHHHHHHHHhc
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAALTPES-------------------------------HLDRLAFSIAINKLSEA 88 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~ 88 (402)
..+..++..+.+.|+++.|+++|++|....-. .||..+|+.++.+|++.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 33444555555556666666666666443211 17889999999999999
Q ss_pred CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 041936 89 NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVF 168 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 168 (402)
|++++|.++|+.|...+..++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 041936 169 IEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR--KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG 246 (402)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (402)
++| ...|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|
T Consensus 531 ~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 531 GIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999 5569999999999999999999999999999999986 6789999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 041936 247 MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFT 326 (402)
Q Consensus 247 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 326 (402)
+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCCChhhHHHHHhcCCC
Q 041936 327 MVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK-FTKNVDTWNEIEAGLPQ 402 (402)
Q Consensus 327 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 402 (402)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+. ..||..+|++++.+|++
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999875 88999999999999863
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.3e-52 Score=400.37 Aligned_cols=349 Identities=14% Similarity=0.179 Sum_probs=310.3
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILY 120 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 120 (402)
.++.++..+...|++++|+++|+++....+..||..+|+.++.+|++.++++.+.+++..|...+..++..+++.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 57788999999999999999999998777788999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC--------------------
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-------------------- 180 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------------- 180 (402)
.+.|++++|.++|++|. .||..+||.++.+|++.|++++|.++|++|.+ .|+.|+
T Consensus 169 ~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred hcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999997 58999999999999999999999999999943 355555
Q ss_pred ---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 181 ---------------LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 181 ---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 44556777788888888888888888853 47788888888888888888888888888888
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 041936 246 GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYF 325 (402)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 325 (402)
|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence 888888888888888888888888888888888888888888888888888888899999998888864 6888999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc--CCCChhhHHHHHhcCCC
Q 041936 326 TMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK--FTKNVDTWNEIEAGLPQ 402 (402)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 402 (402)
.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+. ..|+..+|++|+.+|++
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999763 77899999999998864
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.9e-52 Score=399.73 Aligned_cols=349 Identities=14% Similarity=0.176 Sum_probs=316.6
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHH
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHS 116 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (402)
++...++.++..+...++.+.+.+++..+... +..||..+|+.++..|++.|++++|.++|++|.. ++..+|+.+
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~l 195 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTI 195 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHH
Confidence 35566778888888888888888888777655 6778888888888888888888888888888863 567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCC-----------------------------------HHHHHHHHHHHHHcCCH
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHS-----------------------------------VGAFNALLLALTIAKDY 161 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~~~~~ 161 (402)
+.+|.+.|++++|+++|++|.+.|+.|+ ..+|+.|+.+|++.|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 8888888888888888888877665554 45567888999999999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
++|.++|++|. ++|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..
T Consensus 276 ~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 276 EDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred HHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999995 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS 321 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 321 (402)
|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999999999999999999999999996 469999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 322 SVYFTMVYFMCKGGDYETALGFCKESIA-KGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
.||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.+++++|. ..|+..+|++|+.+|
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTAC 504 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Confidence 9999999999999999999999999986 5999999999999999999999999999998875 679999999999987
Q ss_pred C
Q 041936 401 P 401 (402)
Q Consensus 401 ~ 401 (402)
.
T Consensus 505 ~ 505 (697)
T PLN03081 505 R 505 (697)
T ss_pred H
Confidence 4
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.4e-50 Score=395.63 Aligned_cols=350 Identities=15% Similarity=0.186 Sum_probs=275.8
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII 118 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 118 (402)
...++.++..+.+.|+.+.|.++|+.+. .||..+|+.+|.+|++.|++++|.++|++|...+..|+..+|+.++.
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 3445677788888888888888888774 24667888888888888888888888888887777888888888888
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 198 (402)
+|.+.|+.+.|.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHH
Confidence 888888888888888888888888888888888888888888888888888874 467778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 199 SAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
+|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|++++.+|++.|++++|.++|++|.
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 88888888887788888888888887777777777777777777777777777777777777777777666666666553
Q ss_pred HC------------------------------CC----------------------------------------------
Q 041936 279 SK------------------------------GM---------------------------------------------- 282 (402)
Q Consensus 279 ~~------------------------------~~---------------------------------------------- 282 (402)
+. ++
T Consensus 452 ~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 452 EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 32 12
Q ss_pred -------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 041936 283 -------------------KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGF 343 (402)
Q Consensus 283 -------------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 343 (402)
.||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 532 ~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 3455567777778888888888888888888888888888888888888888888888888
Q ss_pred HHHHH-hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 344 CKESI-AKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 344 ~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
|+.|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|. ..||..+|++|+.+|
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd~~~~~aLl~ac 667 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLNAC 667 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Confidence 88887 56888888888888888888888888888888875 568888888888876
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-49 Score=392.83 Aligned_cols=351 Identities=14% Similarity=0.102 Sum_probs=279.5
Q ss_pred CccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHH
Q 041936 38 SKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSI 117 (402)
Q Consensus 38 ~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 117 (402)
+...++.++..+.+.|++++|+++|+.|... +..||..+|+.++.+|+..++++.+.+++..+...+..++..+++.++
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 3456777777777777888888888777654 677777888888888777777777777777777777777777888888
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|.++|++| ...|+.||..||+.++.+|++.|++
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCCh
Confidence 88888888888888888876 467778888888888888888888888888 4457888888888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (402)
+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888775 467778888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 041936 278 LSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFT 357 (402)
Q Consensus 278 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (402)
.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~v 456 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVI 456 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCee
Confidence 888888888888888888888888888888888888888888888888888888888888888888887753 5677
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcCCC
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 402 (402)
+|+.++.+|.+.|+.++|.++|++|.....||..||++++.+|++
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 888888888888888888888888877778888888888887753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.6e-22 Score=203.74 Aligned_cols=342 Identities=13% Similarity=0.023 Sum_probs=207.1
Q ss_pred HHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC
Q 041936 46 LTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM 125 (402)
Q Consensus 46 l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 125 (402)
...+...|+++.|.+.|+.+....+ .+...+..+...+...|++++|.++++.+.. ..+.+...+..+...+.+.|+
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 548 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLT-IDPKNLRAILALAGLYLRTGN 548 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHcCC
Confidence 3334444555555555544432211 1223444444455555555555555555542 123334445555555555555
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041936 126 TEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILA 205 (402)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 205 (402)
.++|..+++++.+.+ +.+...+..++..+...|++++|..+++.+.+. .+.+...|..+...+...|++++|...|+
T Consensus 549 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 549 EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555443 344455555556666666666666666665432 24455566666666666666666666666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 041936 206 EMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN 285 (402)
Q Consensus 206 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 285 (402)
++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+
T Consensus 626 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 702 (899)
T TIGR02917 626 KLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKA 702 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 666543 3345556666666666666666666666666543 3445666666666666677777777776666653 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041936 286 SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTG 365 (402)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (402)
...+..+...+...|++++|...|..+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5566667777777777777777777777653 444566667777777777777777777777654 5567777777777
Q ss_pred HHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhc
Q 041936 366 LAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAG 399 (402)
Q Consensus 366 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 399 (402)
|.+.|++++|.+.|+++.+..|++...++.+...
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 813 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWL 813 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7778888888888888877777777777666544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=2.7e-22 Score=202.15 Aligned_cols=337 Identities=13% Similarity=0.068 Sum_probs=200.1
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAV 130 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 130 (402)
..|+.+.|..+++.+....+ .+...+..++..+...|++++|.++++.+.. ..+.+...+..+..++...|++++|.
T Consensus 545 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELNP--QEIEPALALAQYYLGKGQLKKALAILNEAAD-AAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCc--cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34444444444444432211 1233444445555555555555555555542 22334445555555555555555555
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 131 RTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
..|+.+.+.+ +.+...+..+..++...|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.
T Consensus 622 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 622 SSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555443 3444455555555555555555555555554321 333455555556666666666666666665554
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041936 211 SIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYS 290 (402)
Q Consensus 211 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 290 (402)
+ +.+...+..+...+...|++++|.+.|+.+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+.
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 774 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT 774 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3 3345556666666666666666666666666543 333555566666666777777777776666653 22556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
.+...|...|++++|...|+++.+... .+...+..+...+...|+ ++|..+++++.+.. +.+..++..+...+...|
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 677777777777777777777776532 356667777777777777 66777777776653 345566667777778888
Q ss_pred ChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 371 KVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
++++|.+.++++.+..+.+..++..+..+|
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 888888888888887777777777666554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.5e-22 Score=180.49 Aligned_cols=294 Identities=11% Similarity=0.087 Sum_probs=227.8
Q ss_pred HHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---HHHHHHHHHHHHHcCC
Q 041936 84 KLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHS---VGAFNALLLALTIAKD 160 (402)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 160 (402)
.+...|++++|...|+++... .+.+...+..+...+...|++++|..+++.+...+..++ ...+..+...|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV-DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 456778889999999888843 455667788888888899999999999988876532221 2467778888889999
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhccCCHHHHH
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN----ASSFGALVAGFYKEEKYEDVN 236 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~ 236 (402)
+++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999888643 245677888888899999999999999998887653322 123556777788889999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041936 237 KVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999888754 34566777788888899999999999999887633323456788888899999999999999988875
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHhc
Q 041936 317 LSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG---ASKVSEAKELIGLVKEK 385 (402)
Q Consensus 317 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 385 (402)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.++
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 456666688888888999999999999888875 5788888877777664 45888888888888764
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=7.5e-22 Score=179.62 Aligned_cols=310 Identities=13% Similarity=0.075 Sum_probs=254.0
Q ss_pred HhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCc---hHHHHHHHHHHHhcCC
Q 041936 49 LKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQN---ERFHAHSIILYGQANM 125 (402)
Q Consensus 49 l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~ 125 (402)
....|+++.|++.|+.+....+ .+..++..+...+...|++++|..+++.+...+.... ...+..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3466899999999999976532 3556889999999999999999999999986543322 2467788889999999
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC---HHHHHHHHHHHHhcCChhHHHH
Q 041936 126 TEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD---LDTYNRVIKAFCESSDSSSAYS 202 (402)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~ 202 (402)
+++|+.+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.....+. ...+..+...+.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998764 567889999999999999999999999999764322221 2245667888899999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 041936 203 ILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGM 282 (402)
Q Consensus 203 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 282 (402)
.|+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 999998764 33566788889999999999999999999987652223466888999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---cCChHHHHHHHHHHHhCCCCCCHHHH
Q 041936 283 KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK---GGDYETALGFCKESIAKGWVPNFTTM 359 (402)
Q Consensus 283 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~ 359 (402)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-- 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-- 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC--
Confidence 456667788999999999999999999999875 6888888888877664 568999999999999887777766
Q ss_pred HHHHHHHHcCCCh
Q 041936 360 KSLVTGLAGASKV 372 (402)
Q Consensus 360 ~~l~~~~~~~g~~ 372 (402)
..|.++|..
T Consensus 355 ----~~c~~cg~~ 363 (389)
T PRK11788 355 ----YRCRNCGFT 363 (389)
T ss_pred ----EECCCCCCC
Confidence 235556553
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=8.6e-20 Score=174.45 Aligned_cols=339 Identities=11% Similarity=-0.008 Sum_probs=273.5
Q ss_pred CccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHH
Q 041936 38 SKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSI 117 (402)
Q Consensus 38 ~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 117 (402)
....+..++..+-..|+++.|+.+++......+..+ ..+..++......|++++|...++++.. ..|.+...+..+.
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~-~~P~~~~a~~~la 117 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR--DLLRRWVISPLASSQPDAVLQVVNKLLA-VNVCQPEDVLLVA 117 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch--hHHHHHhhhHhhcCCHHHHHHHHHHHHH-hCCCChHHHHHHH
Confidence 344556677778889999999999988876655544 3455566667789999999999999983 3566677888889
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
..+...|++++|...+++..+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCH
Confidence 99999999999999999998875 6677889999999999999999999999885542 2233334333 347889999
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH----HHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAE----AKAL 273 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~ 273 (402)
++|...++.+.+....++...+..+..++...|++++|+..+++..... +.+...+..+...+...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 9999999998876433445555666788899999999999999999875 5567788889999999999986 8999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 041936 274 LDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV 353 (402)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (402)
|++..+.... +...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|...++++.+.+
T Consensus 273 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-- 348 (656)
T PRK15174 273 WRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-- 348 (656)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 9999886332 5678899999999999999999999999986422 45677788899999999999999999998864
Q ss_pred CCH-HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 354 PNF-TTMKSLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 354 ~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
|+. ..+..+..++...|+.++|...|++..+..|.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 443 34444567889999999999999998876433
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.1e-18 Score=163.83 Aligned_cols=306 Identities=9% Similarity=0.071 Sum_probs=251.1
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
-...++..+.+.|++++|..+++..... .+.+...+..++.+....|++++|+..|+++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~-~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLT-AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHh-CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3456677888999999999999998843 44455666677778888999999999999999876 677888999999999
Q ss_pred HcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041936 157 IAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVN 236 (402)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 236 (402)
..|++++|...+++..+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHH
Confidence 9999999999999997542 44567788899999999999999999998877642 233344333 3478899999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Q 041936 237 KVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE----AKKFYRIM 312 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~m 312 (402)
..++.+.+....++...+..+...+.+.|++++|...++++.+.... +...+..+...+...|++++ |...|++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99999887653344455566678889999999999999999987433 57778889999999999986 89999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChh
Q 041936 313 SNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVD 391 (402)
Q Consensus 313 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 391 (402)
.+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++.+.+..|.+..
T Consensus 277 l~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 88632 256788999999999999999999999999875 556777888899999999999999999999987555543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.4e-17 Score=158.06 Aligned_cols=327 Identities=10% Similarity=-0.007 Sum_probs=180.5
Q ss_pred HHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHH
Q 041936 48 LLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTE 127 (402)
Q Consensus 48 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 127 (402)
.+...|+++.|++.|+.+... .|+...|..+..++.+.|++++|++.++.... ..+.....+..+..+|...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~-l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALE-LDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCHH
Confidence 445678999999999887643 35677899999999999999999999999884 34556677777888888888888
Q ss_pred HHHHHHHHhHhCC-------------------------------------------------------------------
Q 041936 128 HAVRTFKEMDEHK------------------------------------------------------------------- 140 (402)
Q Consensus 128 ~A~~~~~~~~~~~------------------------------------------------------------------- 140 (402)
+|+..|......+
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 8876543322110
Q ss_pred -----------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC-HHHH
Q 041936 141 -----------------------------------LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTY 184 (402)
Q Consensus 141 -----------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 184 (402)
.+.....|+.+...+...|++++|+..|++.++. .|+ ...|
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~ 368 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSY 368 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHH
Confidence 0011122333334444455555555555554322 222 3344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 041936 185 NRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKL 264 (402)
Q Consensus 185 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (402)
..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHC
Confidence 455555555555555555555554432 2234455555555555555555555555555443 23344444555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HhHHHHHHHHHccCChH
Q 041936 265 RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS------SVYFTMVYFMCKGGDYE 338 (402)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~~~g~~~ 338 (402)
|++++|+..|++..... +-+...++.+...+...|++++|...|++..+.....+. ..++.....+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 55555555555555431 113445555555555555666666555555543211000 01111111222345566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 339 TALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+|..++++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 526 eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 526 EAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666665555543 233344555566666666666666666665543
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=1.4e-16 Score=162.53 Aligned_cols=331 Identities=11% Similarity=0.016 Sum_probs=230.0
Q ss_pred HHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCC-CCchHHH------------H
Q 041936 48 LLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPD-LQNERFH------------A 114 (402)
Q Consensus 48 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~------------~ 114 (402)
.+...|++++|.+.|+.+....+ -+...+..+...+.+.|++++|...|++...... ......+ .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34567899999999988875432 2567889999999999999999999999884322 2221111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH-------
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV------- 187 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l------- 187 (402)
.....+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 22446778999999999999998876 5677788889999999999999999999986542 2223333222
Q ss_pred -----------------------------------HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 041936 188 -----------------------------------IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKY 232 (402)
Q Consensus 188 -----------------------------------i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 232 (402)
...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 233445788888888888887763 33556677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC--------------------------------
Q 041936 233 EDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK-------------------------------- 280 (402)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------------------------- 280 (402)
++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 88888888877643 223333333333334444444444444332110
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 041936 281 -------GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV 353 (402)
Q Consensus 281 -------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (402)
..+.+...+..+...+.+.|++++|+..|++..+... .+...+..++..|...|++++|.+.++.+.+.. +
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 0123444566677778888888888888888887532 246777788888888888888888888777653 3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 354 PNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
.+..++..+..++...|++++|.++++.+....+
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 4556666777788888888888888888877543
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=5.1e-16 Score=151.76 Aligned_cols=348 Identities=12% Similarity=0.083 Sum_probs=216.4
Q ss_pred CccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHH
Q 041936 38 SKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSI 117 (402)
Q Consensus 38 ~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 117 (402)
.+..+...+.+..-.|+.++|++++....... ..+...+..+...+...|++++|.+++++.... .+.+...+..++
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 34455667777777888888887777765421 223445777777778888888888888877632 445556666777
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCh
Confidence 77778888888888888877664 45555 7777777778888888888887776542 22334444455555444444
Q ss_pred hHHH----------------------------------------------HHHHHHHhC-CCCCCHh-hHH----HHHHH
Q 041936 198 SSAY----------------------------------------------SILAEMDRK-SIKPNAS-SFG----ALVAG 225 (402)
Q Consensus 198 ~~a~----------------------------------------------~~~~~~~~~-g~~~~~~-~~~----~l~~~ 225 (402)
++|+ +.++.+.+. ...|+.. .+. ..+.+
T Consensus 167 e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 167 APALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 4333 333333322 1111111 111 11233
Q ss_pred HhccCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCC
Q 041936 226 FYKEEKYEDVNKVLQMMERYGMK-SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP---NSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~ 301 (402)
+...|++++|+..|+.+.+.+.+ |+. .-..+...|...|++++|+.+|+++.+..... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 45667788888888887766521 221 12224567777788888888888776542211 12345555666777788
Q ss_pred HHHHHHHHHHHHhCCC-----------CCC---HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 302 FEEAKKFYRIMSNSGL-----------SPN---SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
+++|..+++.+..... .|+ ...+..+...+...|+.++|...++++.... +.+...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 8888888777776421 122 1234455666777788888888887777654 556677777777777
Q ss_pred cCCChHHHHHHHHHHHhcCCCChhhHH
Q 041936 368 GASKVSEAKELIGLVKEKFTKNVDTWN 394 (402)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~~~~~~~~~ 394 (402)
..|++++|++.++++.+..|.+...+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 777788888887777776666544443
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=5.9e-16 Score=158.05 Aligned_cols=334 Identities=10% Similarity=-0.008 Sum_probs=243.9
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHH------------HHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHH
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAF------------SIAINKLSEANYFNGISQYLEELKTRPDLQNERF 112 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 112 (402)
.-.++...|++++|.+.|+.+....+..+....+ ......+.+.|++++|.+.++++... .+.+...
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~~~a 387 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-DNTDSYA 387 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHH
Confidence 3455567789999999998886543333322222 12244567889999999999999843 4556677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHH-----------------------------------------
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNAL----------------------------------------- 151 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----------------------------------------- 151 (402)
+..+..++...|++++|++.|++..+.. +.+...+..+
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 7788889999999999999999988764 3334333322
Q ss_pred -HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 152 -LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 152 -~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...+
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCC
Confidence 233456789999999999886542 3356677888999999999999999999988753 223433333333344445
Q ss_pred CHHHHHHHHHHHHHC---------------------------------------CCCCChhhHHHHHHHHHccCCHHHHH
Q 041936 231 KYEDVNKVLQMMERY---------------------------------------GMKSGVSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 231 ~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (402)
+.++|...++.+... ..+.+...+..+...+.+.|++++|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 555554444332110 12455567778888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 272 ALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 272 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
..|++..+.... +...+..++..+...|++++|.+.++...+... .+...+..+..++...|++++|.++++++....
T Consensus 624 ~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 624 AAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999987432 677889999999999999999999998876522 245566778888999999999999999998753
Q ss_pred C--CC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 352 W--VP---NFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 352 ~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
. +| +...+..+...+...|++++|++.|+.....
T Consensus 702 ~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 702 KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2 22 2356677788999999999999999998764
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.5e-15 Score=148.56 Aligned_cols=343 Identities=10% Similarity=-0.003 Sum_probs=257.8
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 121 (402)
...+-..+...++++.|.+.++......+ .+...+..+...+...|++++|...++++... .+.+.. +..+..++.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH
Confidence 45566678889999999999998765432 24556778888899999999999999999844 555566 878888999
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------------------------------
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFI-------------------------------- 169 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------------------------------- 169 (402)
..|++++|+..++++.+.. +.+...+..+..++...+..++|+..++
T Consensus 128 ~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 9999999999999999875 5566666777777777777665555444
Q ss_pred --------------HchhhcCCCCCHH-HHH----HHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhcc
Q 041936 170 --------------EFPKTYGIKPDLD-TYN----RVIKAFCESSDSSSAYSILAEMDRKSIK-PNASSFGALVAGFYKE 229 (402)
Q Consensus 170 --------------~~~~~~~~~p~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~ 229 (402)
.+.+.....|+.. .+. ..+..+...|++++|++.|+++.+.+.+ |+. ....+..+|...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhc
Confidence 3322111122211 111 1133456779999999999999987632 222 223357789999
Q ss_pred CCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHH
Q 041936 230 EKYEDVNKVLQMMERYGMKS---GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGM-----------KPN---SVTYSHF 292 (402)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l 292 (402)
|++++|+..|+++.+..... .......+..++...|++++|..+++.+.+... .|+ ...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 99999999999987653111 123456667788999999999999999987631 123 2345567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKV 372 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 372 (402)
...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.+++..... +.+...+......+.+.|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCH
Confidence 788899999999999999998863 2357788899999999999999999999999875 45577777888889999999
Q ss_pred HHHHHHHHHHHhcCCCChhh
Q 041936 373 SEAKELIGLVKEKFTKNVDT 392 (402)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~ 392 (402)
++|+.+++++.+..|.|..+
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHH
Confidence 99999999999987776654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=9.8e-16 Score=147.00 Aligned_cols=305 Identities=13% Similarity=-0.012 Sum_probs=241.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
.+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.++...+.+ +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4556777889999999999999998843 3356788889999999999999999999999876 667889999999999
Q ss_pred HcCCHHHHHHHHHHchhhcCC---------------------------CC-CHHHHHHH---------------------
Q 041936 157 IAKDYKEVKRVFIEFPKTYGI---------------------------KP-DLDTYNRV--------------------- 187 (402)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~---------------------------~p-~~~~~~~l--------------------- 187 (402)
..|++++|+..|.......+. .| +...+..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998766543211111 00 00000000
Q ss_pred ---------HHHH------HhcCChhHHHHHHHHHHhCC-CCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 041936 188 ---------IKAF------CESSDSSSAYSILAEMDRKS-IKP-NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG 250 (402)
Q Consensus 188 ---------i~~~------~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (402)
+..+ ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..+++..+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 0000 11257889999999998765 223 45678888889999999999999999998864 344
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041936 251 VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYF 330 (402)
Q Consensus 251 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 330 (402)
...|..+...+...|++++|...|++..+... .+...|..+...+...|++++|...|++..+... .+...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHH
Confidence 66888889999999999999999999988742 2577889999999999999999999999998642 246778888899
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 331 MCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
+.+.|++++|...+++.++.. +.+...+..+...+...|++++|++.|++..+..+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 999999999999999998764 556888999999999999999999999998886443
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=6.3e-15 Score=141.97 Aligned_cols=350 Identities=11% Similarity=0.045 Sum_probs=218.2
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIIL 119 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 119 (402)
.....++. ..+.|+.+.|++.|+......+..+ +..+ .++..+...|+.++|+.++++.. .+.+........+...
T Consensus 36 ~~y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLII-RARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARA 111 (822)
T ss_pred HHHHHHHH-HHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHH
Confidence 44444444 4557899999999988875443321 1223 77777888899999999999988 4444445555555678
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS 199 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 199 (402)
+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHH
Confidence 999999999999999999876 666778888888999999999999999998644 5666666445444544566666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHH----------------------------------------
Q 041936 200 AYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVL---------------------------------------- 239 (402)
Q Consensus 200 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~---------------------------------------- 239 (402)
|++.++++.+.. +-+...+..+..++.+.|-...|.++.
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 888898888863 334555555555554444333322222
Q ss_pred --------HHHHHC-CCCCC-hhhHH----HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041936 240 --------QMMERY-GMKSG-VSMYN----VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEA 305 (402)
Q Consensus 240 --------~~~~~~-~~~~~-~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 305 (402)
+.+... +-.|. ...|. -.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 222221 00121 11111 12334555666777777777777666443334556666777777777777
Q ss_pred HHHHHHHHhCC-----CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC-------------CCCCHH-HHHHHHHHH
Q 041936 306 KKFYRIMSNSG-----LSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG-------------WVPNFT-TMKSLVTGL 366 (402)
Q Consensus 306 ~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~-~~~~l~~~~ 366 (402)
+.++..+.... ..++......|..+|...+++++|..+++++.+.. ..||-. .+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 77777665432 11233334566666677777777777777666521 011222 223345556
Q ss_pred HcCCChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 367 AGASKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 367 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
.-.|+..+|++.++++....|.|...+..+-+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66677777777777776666666666555433
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=7.4e-17 Score=142.69 Aligned_cols=329 Identities=12% Similarity=0.060 Sum_probs=237.7
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHH------------
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERF------------ 112 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------ 112 (402)
.-..++..|+.+.|++.++.+....+. ....|..+..++...|+.+.|.+.|.+...- .+.....
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alql-nP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQL-NPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc-CcchhhhhcchhHHHHhhc
Confidence 445788899999999999888644322 3467888888888888888888888776621 2211222
Q ss_pred ----------------------HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041936 113 ----------------------HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 113 ----------------------~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 170 (402)
|..+...+..+|+...|++.|++..+.+ +--...|-.|...|...+.+++|...|.+
T Consensus 199 rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 2233333445566666666666655543 23345666666677777777777776666
Q ss_pred chhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 041936 171 FPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN-ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS 249 (402)
Q Consensus 171 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (402)
..... +.....+..+...|-..|.+|.|+..|++.++. .|+ ...|+.|..++-..|++.+|...|.+..... +-
T Consensus 278 Al~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ 352 (966)
T KOG4626|consen 278 ALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN 352 (966)
T ss_pred HHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc
Confidence 54321 223455666666677778888888888887775 344 5678888888888888888888888877654 34
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHH
Q 041936 250 GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTM 327 (402)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l 327 (402)
.....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.+. ++|+ ...|+.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 4667788888888888888888888887765 343 45678888889999999999999998887 5676 5788889
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 328 VYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
...|-..|+.+.|.+.+.+++..+ +-=.+.++.|...|-..|+..+|++-+++..+.-|
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999888764 33356788899999999999999999999887533
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=6.9e-17 Score=142.86 Aligned_cols=298 Identities=14% Similarity=0.072 Sum_probs=177.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHH-HHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGA-FNALL 152 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~ 152 (402)
-.++|+.+.+.+-..|++++|+.+++.+.+ ..+...+.|..+..++...|+.+.|.+.|.+..+.+ |+... ...+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aie-l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIE-LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHh-cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 346899999999999999999999999984 345567788889999999999999999999988764 44433 23344
Q ss_pred HHHHHcCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccC
Q 041936 153 LALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN-ASSFGALVAGFYKEE 230 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~ 230 (402)
..+...|++++|...|.+.++. .|. ...|+.|...+-..|+...|++.|++..+. .|+ ...|-.|...|...+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIET---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhh---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHh
Confidence 4445566666666666555432 222 234555555555555555555555555543 222 334444555554444
Q ss_pred C----------------------------------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 231 K----------------------------------YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 231 ~----------------------------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
. .+-|+..|++..+.. +--...|+.+..++-..|++.+|.+.|.+
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 4 455555554444432 11234455555555555666666666655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 041936 277 MLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355 (402)
Q Consensus 277 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 355 (402)
....... -....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++.++. .|+
T Consensus 346 aL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~ 420 (966)
T KOG4626|consen 346 ALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT 420 (966)
T ss_pred HHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch
Confidence 5544111 2334555556666666666666666555542 233 344555666666666666666666666543 333
Q ss_pred -HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 356 -FTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 356 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
...|+.+...|-..|+.+.|.+.+.+...-
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 245555666666666666666666655543
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=4.8e-14 Score=135.96 Aligned_cols=345 Identities=10% Similarity=0.065 Sum_probs=237.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 041936 44 AALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQA 123 (402)
Q Consensus 44 ~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 123 (402)
..+.++...|+.+.|+..++... .+ ..........+...+...|++++|.++++++.. ..+.+...+..++..+.+.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~-~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~-~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ-SS-MNISSRGLASAARAYRNEKRWDQALALWQSSLK-KDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc-cC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHhhc
Confidence 56677777889999999998887 22 222333444446678888999999999999984 4555677777888899999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH----
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS---- 199 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~---- 199 (402)
++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +.+...+..++....+.|-...
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9999999999998876 4555566555555555666666999999987652 3344444555554444443322
Q ss_pred --------------------------------------------HHHHHHHHHhC-CCCCC-HhhH----HHHHHHHhcc
Q 041936 200 --------------------------------------------AYSILAEMDRK-SIKPN-ASSF----GALVAGFYKE 229 (402)
Q Consensus 200 --------------------------------------------a~~~~~~~~~~-g~~~~-~~~~----~~l~~~~~~~ 229 (402)
|+.-++.+... +-.|. ...| .-.+-++...
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 23333333321 11122 1112 1234566778
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHH
Q 041936 230 EKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG-----MKPNSVTYSHFIYGFCKDGNFEE 304 (402)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~ 304 (402)
|++.++++.|+.+...+.+....+-..+.++|...+.+++|..+|+.+.... ..++......|..++...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 8889999999998887765555677788888888999999999998886642 12244445778888888899999
Q ss_pred HHHHHHHHHhCCC-----------CCC--H-HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 305 AKKFYRIMSNSGL-----------SPN--S-SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 305 a~~~~~~m~~~~~-----------~~~--~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
|..+++++.+... .|| - ..+..++..+.-.|+..+|++.++++.... +-|......+...+...|
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 9999988887311 122 2 334455666778889999999998887765 668888888888888888
Q ss_pred ChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 371 KVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
.+.+|++.++......|.+..+....
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 88888888877766655555544433
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=2.3e-13 Score=133.93 Aligned_cols=323 Identities=11% Similarity=0.025 Sum_probs=225.6
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhc-CC-CCCchHHHHHHHHHHHhcCC---HH
Q 041936 53 SNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKT-RP-DLQNERFHAHSIILYGQANM---TE 127 (402)
Q Consensus 53 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~li~~~~~~~~---~~ 127 (402)
+...++.+.++.+-...+- +......+.-...+.|+.++|.++++.... .+ ...+..+...++..|.+.+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~~~~--~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPA--NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 4445555555555444111 445556666667788888888888888774 21 12244455577777777655 33
Q ss_pred HHHHH----------------------HH---HhHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC
Q 041936 128 HAVRT----------------------FK---EMDEHKLRH--SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD 180 (402)
Q Consensus 128 ~A~~~----------------------~~---~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 180 (402)
++..+ .. ...... ++ +...|..+..++.. ++.++|+..+.+.... .|+
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd 508 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPD 508 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCc
Confidence 33322 11 111111 34 66777878877776 7888888877777544 466
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHS 260 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (402)
......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++...+.. +.....+..+...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 544444455556889999999999887654 4445556677778888899999999998888765 3333333344444
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 041936 261 LCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETA 340 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 340 (402)
..+.|++++|...+++..+. .|+...|..+..++.+.|++++|+..+++...... -+...+..+..++...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 45569999999999988876 45677888888889999999999999999888632 2466777888888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 341 LGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
...+++..+.. +-+...+..+..++...|++++|+..+++..+..|.+
T Consensus 663 i~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 663 REMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 99999888865 5577888888889999999999999999988765444
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=5.4e-17 Score=140.35 Aligned_cols=258 Identities=10% Similarity=0.107 Sum_probs=60.8
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC
Q 041936 82 INKLSEANYFNGISQYLEELKTRP-DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD 160 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (402)
...+.+.|++++|.++++...... .+.+..++..+...+...++++.|.+.++++...+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 444445555555555553322122 23334444444444555555555555555555443 2233444444444 45555
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKS-IKPNASSFGALVAGFYKEEKYEDVNKVL 239 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (402)
+++|.+++....+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555443222 2333444444455555555555555555544321 2234444444445555555555555555
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 240 QMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
++..+.. +.+....+.++..+...|+.+++.++++...... +.|...+..+..+|...|+.++|..+|++..+.. +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 5554443 2234444445555555555555444444444332 2233334444445555555555555555544421 11
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 320 NSSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
|......+..++...|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 3444444444555555555555444433
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=6.9e-14 Score=118.95 Aligned_cols=305 Identities=16% Similarity=0.201 Sum_probs=217.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+..++..+|.++++-...++|.+++++............++.+|.+-. +....+++.+|.+..+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 456889999999999999999999998887777788888888876543 2233778888988888999999999999
Q ss_pred HHHHcCCHHH----HHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHhC----CC----CCCHhhHH
Q 041936 154 ALTIAKDYKE----VKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS-AYSILAEMDRK----SI----KPNASSFG 220 (402)
Q Consensus 154 ~~~~~~~~~~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~----g~----~~~~~~~~ 220 (402)
+..+.|+++. |.+++.+| ++.|+.|...+|..+|..+++.++..+ +..++.++... .+ +.|...|.
T Consensus 282 c~akfg~F~~ar~aalqil~Em-KeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEM-KEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHH-HHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999997765 56777888 677999999999999999888887754 44444444432 22 22455677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYG----MKSG---VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFI 293 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 293 (402)
..|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 78888888888888887776554321 2233 2335566777788888888888888888877778888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-Ch--------H-----HHHHHH-------HHHHhCCC
Q 041936 294 YGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG-DY--------E-----TALGFC-------KESIAKGW 352 (402)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~a~~~~-------~~~~~~~~ 352 (402)
++....|.++-.-++|..++..|...+...-.-++..+++.. +. . -|..++ .++.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-- 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-- 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 888888888888888888888776555555555555555443 11 0 011111 122222
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 353 VPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
..+....+.+.-.+.+.|..++|.++|..+..+
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 334445566666677888888888888877543
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=1.5e-13 Score=124.25 Aligned_cols=284 Identities=11% Similarity=0.059 Sum_probs=200.2
Q ss_pred cCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHH--HHHHHHHHcCCHHHHH
Q 041936 88 ANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFN--ALLLALTIAKDYKEVK 165 (402)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 165 (402)
.|+++.|.+.+.........| .-.+.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 488888887777655332221 222333344557888888888888888765 44443322 3366788888888888
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhccCCHHHHHHH
Q 041936 166 RVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNA-------SSFGALVAGFYKEEKYEDVNKV 238 (402)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 238 (402)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888886542 445667788888888888899998888888887644222 1233334434444555666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041936 239 LQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 318 (402)
++.+.+. .+.+......+...+...|+.++|..++++..+. .||... .++.+....++.+++.+..+...+...
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P- 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG- 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-
Confidence 6665443 2456777888888888999999999999888774 444422 233444456888888888888887632
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 319 PNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 25666778888889999999999999988875 68888888888899999999999988887754
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=1.7e-13 Score=123.95 Aligned_cols=285 Identities=11% Similarity=0.082 Sum_probs=219.3
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHH--HHHHHHHhcCCHHHH
Q 041936 52 ESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHA--HSIILYGQANMTEHA 129 (402)
Q Consensus 52 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~A 129 (402)
.|+++.|.+.........+. | ...|-.......+.|+++.|.+.+.++.+. .++..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-P-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-h-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 58999999887765443222 1 223434455558899999999999998743 33332222 336688999999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH------HHHHHHHHHHHhcCChhHHHHH
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL------DTYNRVIKAFCESSDSSSAYSI 203 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~ 203 (402)
...++.+.+.+ +-+......+...|.+.|++++|.+++..+.+.....++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999887 7788899999999999999999999999996553332221 1334444444455666777777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 041936 204 LAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK 283 (402)
Q Consensus 204 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (402)
++.+.+. .+.+......+...+...|+.++|.+++++..+. +++... .++.+.+..++.+++.+..+...+....
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 7776544 3557888999999999999999999999999874 455422 2334445669999999999999987433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 284 PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 284 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667889999999999999999999999984 68999999999999999999999999998765
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=1.5e-13 Score=124.98 Aligned_cols=299 Identities=10% Similarity=-0.002 Sum_probs=209.9
Q ss_pred HHHHHHHH--HhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 78 FSIAINKL--SEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 78 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
...+..++ ...|+++.|.+.+....+.. +.....+.....++.+.|+++.|.+.+.+..+....+.....-.....+
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 34444444 34689999999998876432 2223334455667888899999999999987653122223444457888
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH-HHHHHH---hccCC
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFG-ALVAGF---YKEEK 231 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~---~~~~~ 231 (402)
...|+++.|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999996653 446667888999999999999999999999988654 333332 111211 22233
Q ss_pred HHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHH
Q 041936 232 YEDVNKVLQMMERYGM---KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVT---YSHFIYGFCKDGNFEEA 305 (402)
Q Consensus 232 ~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a 305 (402)
.+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHH
Confidence 3333345554444321 2377888889999999999999999999999873 33331 11122223345778888
Q ss_pred HHHHHHHHhCCCCCC-H--HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 041936 306 KKFYRIMSNSGLSPN-S--SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLV 382 (402)
Q Consensus 306 ~~~~~~m~~~~~~~~-~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (402)
.+.++...+. .|+ . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 319 ~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 319 EKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887765 233 3 5667889999999999999999996444444789988999999999999999999999987
Q ss_pred Hh
Q 041936 383 KE 384 (402)
Q Consensus 383 ~~ 384 (402)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 55
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.7e-16 Score=137.29 Aligned_cols=262 Identities=15% Similarity=0.120 Sum_probs=115.6
Q ss_pred HHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC
Q 041936 46 LTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM 125 (402)
Q Consensus 46 l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 125 (402)
-.++...|+++.|+++++..........|...|..+.......++++.|.+.++.+... .+.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-DKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-ccccc
Confidence 45566779999999999654333212234556666667777789999999999999844 33466667777777 79999
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041936 126 TEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILA 205 (402)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 205 (402)
+++|.+++....+. .++...+..++..+...++++++.++++.+......+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887654 4667778889999999999999999999986544456788889999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 041936 206 EMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN 285 (402)
Q Consensus 206 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 285 (402)
+..+.. +-|......++..+...|+.+++.++++...+.. +.+...+..+..+|...|+.++|...|++..... +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 999873 3357788999999999999999999998887765 5666778899999999999999999999998863 337
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 286 SVTYSHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
......+..++...|+.++|.++..+...
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 88888999999999999999999887654
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=3.1e-13 Score=110.99 Aligned_cols=297 Identities=11% Similarity=0.094 Sum_probs=219.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH------HHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSV------GAFNA 150 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~ 150 (402)
.|..-++.+. .++.++|.++|-+|. ...+.+.+...++...|.+.|..|.|+++.+.+.++ ||. .....
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l-~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEML-QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHH-hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 4544444443 457889999998888 466777888888999999999999999999988763 332 33455
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHH
Q 041936 151 LLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNA----SSFGALVAGF 226 (402)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~ 226 (402)
|..-|...|-+|.|+.+|..+.+.. ..-.....-|+..|-...+|++|+++-+++.+.+-++.. ..|.-+...+
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 6777888999999999998886432 223456777888999999999999999988887644432 3466677777
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAK 306 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 306 (402)
....+.+.|...+.+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 191 LASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 77888999999999888765 44455555666888899999999999999998855444567788899999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHH
Q 041936 307 KFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG---ASKVSEAKELIGLVK 383 (402)
Q Consensus 307 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 383 (402)
.++.++.+... ....-..+-.......-.+.|..++.+-+.+ +|+...+..++..-.. .|...+...++..|.
T Consensus 270 ~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 270 NFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 99999888643 3333444444445555667777777666655 7899999999887654 345666666777766
Q ss_pred hc
Q 041936 384 EK 385 (402)
Q Consensus 384 ~~ 385 (402)
..
T Consensus 346 ge 347 (389)
T COG2956 346 GE 347 (389)
T ss_pred HH
Confidence 53
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=5e-13 Score=121.63 Aligned_cols=290 Identities=11% Similarity=0.027 Sum_probs=211.1
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLDR-LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
..|+++.|.+.+...... .|++ ..+-.......+.|+++.|.++++...+................+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 368999999999776543 2333 344455677888899999999999987433222223444457788999999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHH-HHHH---HHHhcCChhHHHHHHH
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYN-RVIK---AFCESSDSSSAYSILA 205 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~---~~~~~~~~~~a~~~~~ 205 (402)
...++.+.+.. |.+...+..+...+...|++++|.+++..+.+. ++. +...+. .-.. .....+..++..+.+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999886 678888999999999999999999999999654 333 332231 1111 1133333333444555
Q ss_pred HHHhCC---CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 206 EMDRKS---IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSM---YNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 206 ~~~~~g---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
.+.+.. .+.+...+..+...+...|+.++|.+++++..+.. |+... .....-.....++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 555442 12378889999999999999999999999999865 43331 12222233445788899999998887
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 280 KGMKPNS--VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 280 ~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6222 33 556688899999999999999999644444578988899999999999999999999998654
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1e-12 Score=121.63 Aligned_cols=337 Identities=13% Similarity=0.111 Sum_probs=260.9
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII 118 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 118 (402)
++.+..|-.++.+ |+.++|.+++.+...+.+. ....|..+...+-+.|+.+++...+-.+- .-.+.+...|..+..
T Consensus 140 ~~ll~eAN~lfar-g~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 140 RQLLGEANNLFAR-GDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHH
Confidence 4555566666665 9999999999988766433 55789999999999999999988776655 445677799999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHH----HHHHHHHHhc
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTY----NRVIKAFCES 194 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~----~~li~~~~~~ 194 (402)
...+.|.++.|.-.|.+..+.+ +++...+-.-...|-+.|+...|.+-|.++....+ +.|..-+ -.+++.+...
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987 67777777778899999999999999999965422 2222223 3345667777
Q ss_pred CChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-------------------------
Q 041936 195 SDSSSAYSILAEMDRK-SIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK------------------------- 248 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------------- 248 (402)
++-+.|.+.++..... +-..+...++++...+.+...++.|......+......
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 8889999999887763 23446678889999999999999999888777652211
Q ss_pred --CChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 041936 249 --SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGM--KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY 324 (402)
Q Consensus 249 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 324 (402)
++..+ -.+.-++.+.+..+....+...+....+ .-+...|.-+..+|...|++.+|+.+|..+......-+...|
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 22222 1223344455555555666666666553 335668889999999999999999999999987555568899
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 325 FTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
-.+..+|...|..++|.+.++..+... +.+...-..|...+.+.|+.++|.+++..+.
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999874 5566666778888999999999999999865
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=8.2e-13 Score=112.55 Aligned_cols=303 Identities=17% Similarity=0.241 Sum_probs=227.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHH--HHhcCCHHH-HHHHHHHhHhCC-------------
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIIL--YGQANMTEH-AVRTFKEMDEHK------------- 140 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~-A~~~~~~~~~~~------------- 140 (402)
+=+.++. +...|.+..+--+|+.|...+.+.++.+-..++.. |....++-- -.+.|-.|...|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 4444444 45678889999999999988888888776666542 322222211 122233332211
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 041936 141 ------LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKP 214 (402)
Q Consensus 141 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~ 214 (402)
.+.+..+|..+|.++|+-...+.|.++|++. .....+.+..+||.+|.+-.-.. ..+++.+|....+.|
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCC
Confidence 2456788999999999999999999999998 44466788899999987654332 278899999999999
Q ss_pred CHhhHHHHHHHHhccCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH-HHHHHHHHHH----CCCCC-
Q 041936 215 NASSFGALVAGFYKEEKYED----VNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAE-AKALLDEMLS----KGMKP- 284 (402)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~p- 284 (402)
|..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ...+|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998765 55778899999999999999999999999888755 4444444443 22333
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 041936 285 ---NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG----LSPN---SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVP 354 (402)
Q Consensus 285 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 354 (402)
|...|...+..|....+.+-|.++-.-+.... +.|+ ..-|..+..+.|.....+....+++.|+-.-+-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 45567788888889999999988877665431 2233 2345677778888889999999999999887788
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 355 NFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+..+...++++..-.|.++-..++|.++..-
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 9999999999999999999998998888764
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=1.7e-12 Score=127.92 Aligned_cols=333 Identities=9% Similarity=0.037 Sum_probs=244.8
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcCCcc---hHHHH------------------
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAAL-TPESHLDRLAFSIAINKLSEANYFN---GISQY------------------ 97 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~------------------ 97 (402)
..+..+--.+...|+.++|-++++.... +....++...-..++..+.+.+... ++..+
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 3455566667778889999999988866 4445555556667777777776522 22222
Q ss_pred ----HHHhh-c-CCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041936 98 ----LEELK-T-RPDLQ--NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFI 169 (402)
Q Consensus 98 ----~~~~~-~-~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (402)
++... . ...+. +...+..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...|+
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 11111 0 11233 56677777777766 8999999988887765 3555444445556678999999999999
Q ss_pred HchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 041936 170 EFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS 249 (402)
Q Consensus 170 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (402)
++... +|+...+..+...+.+.|++++|.+.+++..+.+ +.+...+..+.......|++++|...+++..+.. |
T Consensus 534 ka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P 607 (987)
T PRK09782 534 KISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--P 607 (987)
T ss_pred HHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--C
Confidence 87533 5566667777888899999999999999998864 2233344444445556699999999999998865 6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 250 GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
+...|..+..++.+.|++++|...+++..+.... +...++.+..++...|+.++|+..+++..+... -+...+..+..
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~ 685 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAY 685 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 7888999999999999999999999999987432 567788888899999999999999999988633 25678889999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 330 FMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
++...|++++|...+++..+.. +-+..+.........+..+++.|.+-++....
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998864 22334545555666666777777777666554
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.1e-12 Score=107.93 Aligned_cols=273 Identities=11% Similarity=0.091 Sum_probs=211.7
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH--HHHHHHHHHHHhcCCh
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL--DTYNRVIKAFCESSDS 197 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~ 197 (402)
+.-.++.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|..|.|+++.+.+.++.+.+-+. .....|.+-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 344678999999999999865 5666777789999999999999999999997654433322 2345677888999999
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccCCHHHHHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG----VSMYNVRIHSLCKLRKCAEAKAL 273 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~ 273 (402)
|.|+++|..+.+.| ..-......|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....+++.|...
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999875 33566788999999999999999999999988764332 34566777777788999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 041936 274 LDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV 353 (402)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (402)
+.+..+.... .+..-..+.+.+...|+++.|.+.++...+.+...-..+...|..+|...|+.++...++..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 9999887433 3445556778889999999999999999998766667888999999999999999999999998873
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 354 PNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
+....-..+.+.-....-.+.|...+.+-..+ .|+...+..+|.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt~~gf~rl~~ 323 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR-KPTMRGFHRLMD 323 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCcHHHHHHHHH
Confidence 34444444555444455556666665554443 466666666654
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.1e-12 Score=112.71 Aligned_cols=299 Identities=11% Similarity=0.017 Sum_probs=209.3
Q ss_pred CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC--CCHHHHHHHHHHHHHcCCHH-HHH
Q 041936 89 NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLR--HSVGAFNALLLALTIAKDYK-EVK 165 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~-~a~ 165 (402)
.+.+++.+-.+.+...|.+....+-+....+.-...+++.|+.+|+++.+...- .|..+|..++..--....+. -|.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 344445544455544555555444444455555666667777777766655310 23445554443222211111 122
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 166 RVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
.+++ + . +--+.|+.++.+-|.-.++.++|...|++.++.+ +-....|+.+.+-|....+...|.+.|+...+.
T Consensus 321 ~v~~-i---d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 321 NVSN-I---D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHH-h---c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 2221 1 1 2234566777777888889999999999999875 335678999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 041936 246 GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYF 325 (402)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 325 (402)
. +.|-..|-.+.++|.-.+.+.-|+-.|++...... -|...|.+|.++|.+.++.++|++.|.+....|-. +...+.
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~ 470 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALV 470 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHH
Confidence 6 77889999999999999999999999999988632 37889999999999999999999999999987643 668899
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC----CC-CC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 326 TMVYFMCKGGDYETALGFCKESIAK----GW-VP-NFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
.+...|-+.++.++|.+.+++.++. |. .| .....--|...+.+.+++++|.......... .+...--++|++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-~~e~eeak~LlR 548 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-ETECEEAKALLR 548 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 9999999999999999999887662 32 22 2233334566678888988888877666653 444444444444
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.6e-13 Score=123.02 Aligned_cols=287 Identities=12% Similarity=0.006 Sum_probs=220.7
Q ss_pred CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC--CCCCHHHHHHHHHHHHHcCCHH-HHH
Q 041936 89 NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHK--LRHSVGAFNALLLALTIAKDYK-EVK 165 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~-~a~ 165 (402)
-+..+|...|..+. .....+..+...+..+|...+++++|.++|+.+.+.. .-.+..+|.+.+..+-+.-.+. -|.
T Consensus 333 y~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 35678888888844 4455566778888899999999999999999998753 1235677877775554322221 233
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 166 RVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
.+.+.. +-.+.+|..+..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|+|...|+....
T Consensus 412 ~Li~~~------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 412 DLIDTD------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHhhC------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 333333 346789999999999999999999999999885 44 678999999999999999999999998875
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 041936 245 YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY 324 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 324 (402)
.. +.+-..|--+.-.|.+.++++.|+-.|++..+.+.. +.+....+...+.+.|+.|+|++++++......+ |+..-
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 32 223334445667899999999999999999987544 6667777888889999999999999999886544 34444
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 325 FTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
-..+..+...++.++|++.++++++. ++.+...+-.+...|.+.|+.+.|+.-|.-+.+..|+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 44556677789999999999999886 3556677888899999999999999999888876443
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=1.6e-11 Score=104.00 Aligned_cols=284 Identities=12% Similarity=0.082 Sum_probs=147.3
Q ss_pred CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 041936 89 NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVF 168 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 168 (402)
|+|.+|+++..+-.+.+..|. -.|...+.+.-+.|+.+.+-+++.+..+..-.++...+-+........|+.+.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 555555555555443322222 2233334444455555555555555554322344444445555555555555555555
Q ss_pred HHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 169 IEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNA-------SSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
+++.+.. +-.........++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 177 ~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5543321 223444555555555555555555555555555533332 2455555555554444444444444
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS-GLSPN 320 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~ 320 (402)
.... ..-+...-.+++.-+.++|+.++|.++..+..+.+..|. -...-.+.+-++.+.-++..+.-.+. +. +
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 3322 133344455555666666666666666666666554444 11222344555555555555544433 22 2
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 321 SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
+..+..|...|.+.+.+.+|...|+...+. .|+.++|..+..++.+.|+.++|.++.++..-
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 355566666666666666666666655543 56666666666666666666666666666543
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=8.2e-13 Score=118.59 Aligned_cols=287 Identities=14% Similarity=0.076 Sum_probs=222.8
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcC-C-CCCchHHHHHHHHHHHhcCCHHHHHH
Q 041936 54 NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTR-P-DLQNERFHAHSIILYGQANMTEHAVR 131 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~ 131 (402)
+.++|+..|...... ..-+......+..+|...+++++|.++|+.+... + ...+.++|.+.+..+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 567788887773322 2223466777888999999999999999999832 2 23456788887754322 22233
Q ss_pred HH-HHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 132 TF-KEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP-DLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 132 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++.+ .+.| ...+|+.+..-+....++|.|...|+..+.
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAi---Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAI---QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhh---ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 32 2344443 6778899999999999999999999999986 3456 678999999999999999999999999876
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041936 210 KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTY 289 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 289 (402)
.. +-+-..|--++..|.+.++++.|+-.|++..+.+ +.+.+....+...+-+.|+.++|++++++....... |+..-
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 42 1123345557788999999999999999999887 667777888888999999999999999999987544 55554
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 355 (402)
-..+..+...+++++|+..++++++. .|+ ...|..+...|-+.|+.+.|+.-|.-+.+.+.+++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 55677778899999999999999985 455 56778888999999999999999988887654433
No 40
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=9.7e-13 Score=108.32 Aligned_cols=261 Identities=10% Similarity=0.061 Sum_probs=213.8
Q ss_pred HHHhcCCHHHHHHHHHHhHh---------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 119 LYGQANMTEHAVRTFKEMDE---------HKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
.|...+++..|........+ .+...|-.--+.+..+|.+.|.+.+|..-++.-.++ .|-+.||-.|-+
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLsk 264 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSK 264 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHH
Confidence 34556677777654443322 111223333367889999999999999999988766 788899999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAE 269 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 269 (402)
.|.+..++..|+.++.+-.+. .+.|+....-+.+.+-..++.++|.++|+...+.. +.++....++...|.-.++++.
T Consensus 265 vY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHH
Confidence 999999999999999998886 34455555667788888999999999999998865 5666777777788888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 270 AKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN--SSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 270 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
|+.+|+++.+.|+. +...|+.+.-+|.-.+++|-++.-|.+....-..|+ ...|-.+.......||+..|.+.|+-.
T Consensus 343 AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 99999999999987 888999999999999999999999999887644444 456777888888899999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 041936 348 IAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKF 386 (402)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (402)
+..+ ....+.++.|.-.-.+.|++++|..+++......
T Consensus 422 L~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 422 LTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8876 6678899999888899999999999999988763
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=2e-11 Score=113.24 Aligned_cols=311 Identities=11% Similarity=0.073 Sum_probs=241.6
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 82 INKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
.+.+...|++++|.+++.+++ +..+.....|..|...|-+.|+.+++...+-..-..+ +-|...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvI-kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVI-KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHH-HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 344455599999999999999 4467777889999999999999999999888776665 77789999999999999999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH----HHHHHHHhccCCHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSF----GALVAGFYKEEKYEDVNK 237 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~~~~~~~~a~~ 237 (402)
+.|.-.|.+.++.. +++...+---+..|-+.|+...|..-|.++.....+.|..-+ -.+++.+...++-+.|.+
T Consensus 224 ~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999997653 556666666778899999999999999999887433333333 334566777888899999
Q ss_pred HHHHHHHC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH--------------------------H
Q 041936 238 VLQMMERY-GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTY--------------------------S 290 (402)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--------------------------~ 290 (402)
.++..... +-..+...++.++..+.+...++.|......+......+|..-| .
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 88877662 23456677889999999999999999998888762222222111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSG--LSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 368 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (402)
.++-++.+.+..+....+.....+.. +.-+...|.-+..+|.+.|++.+|..++..+......-+...|-.+.++|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23344555556666666666666665 3345678899999999999999999999999988556667899999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 369 ASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 369 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
.|..++|.+.|+.+....|.+...--+|
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~L 489 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITL 489 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhH
Confidence 9999999999999999877666544433
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=5e-11 Score=101.12 Aligned_cols=287 Identities=12% Similarity=0.095 Sum_probs=235.7
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 041936 52 ESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVR 131 (402)
Q Consensus 52 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 131 (402)
.|++..|...........+. ....|-.-..+.-+.|+.+.+..++.+.-+....++.....+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 58999999999876555332 2345666777888889999999999999877667777778888889999999999999
Q ss_pred HHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH-------HHHHHHHHHHHhcCChhHHHHHH
Q 041936 132 TFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL-------DTYNRVIKAFCESSDSSSAYSIL 204 (402)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~ 204 (402)
-++++.+.+ +.+.........+|.+.|++.....++..+.+. ++-.|. .+|..+++-....+..+.-...+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999887 778889999999999999999999999999554 554443 46777888777777777777788
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 205 AEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 205 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
+....+ .+-++..-..++.-+.+.|+.++|.++..+..+.+..|. -...-.+.+-++.+.-++..+........
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 877655 455777888888899999999999999999998876665 22233456778888888888877765322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
++..+.++...|.+.+.|.+|.+.|+...+ ..|+..+|+.+..++.+.|+..+|.+..++....
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 457888999999999999999999997777 4689999999999999999999999999987654
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.3e-11 Score=104.88 Aligned_cols=261 Identities=13% Similarity=0.089 Sum_probs=209.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCC-CCHHHHHHHHHHHHhcC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIK-PDLDTYNRVIKAFCESS 195 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~ 195 (402)
..++....+.+++++-.+.....|.+-+...-+....+.-...++++|+.+|+++.+..... -|..+|..++..--...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 34566667888888888888888876666666666667778899999999999997653222 25667777765433222
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
. +..+.+-.-.--+--+.|+.++.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|.+-|+
T Consensus 314 k----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 K----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred H----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2 2222221111123456789999999999999999999999999987 5667889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 041936 276 EMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355 (402)
Q Consensus 276 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 355 (402)
..++.... |-..|-.+.++|.-.+...-|+-+|++..+... -|...|.+|..+|.+.++.++|.+.|+.....| ..+
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 99987433 888999999999999999999999999998632 368999999999999999999999999999877 446
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 356 FTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
...+..|...|-+.++.++|.+.|++..+.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788999999999999999999999987763
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=2.8e-10 Score=102.30 Aligned_cols=340 Identities=11% Similarity=0.041 Sum_probs=229.2
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII 118 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 118 (402)
...+..+..+=++.|.-+....+++.+...-+ -....|-......-..|++..|..++..... ..+.+..++...+.
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~~p--kae~lwlM~ake~w~agdv~~ar~il~~af~-~~pnseeiwlaavK 626 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQCP--KAEILWLMYAKEKWKAGDVPAARVILDQAFE-ANPNSEEIWLAAVK 626 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHhcCCcHHHHHHHHHHHH-hCCCcHHHHHHHHH
Confidence 33444555555666677777777766654422 2334555555566666777777777777763 34457777777777
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHHhcCCh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL-DTYNRVIKAFCESSDS 197 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~ 197 (402)
.-....+++.|..+|.+.... .|+...|..-+..-.-.+..++|.+++++.++. -|+- ..|-.+...+-+.+++
T Consensus 627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHH
Confidence 777777788888777776653 566677766666666677777788777777655 2332 3455556666667777
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (402)
+.|.+.|..=.+. ++-.+..|..+...--+.|.+-+|..++++..-.+ +.+...|-..|++-.+.|+.+.|..+..+.
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777766654443 33344556666666667777777888887777666 566777777788777888888887777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 041936 278 LSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFT 357 (402)
Q Consensus 278 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (402)
.+. ++.+...|..-|-..-+.++-....+.+++. .-|+.....+...+-...++++|.++|.+.++.+ +..-.
T Consensus 780 LQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD 852 (913)
T KOG0495|consen 780 LQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGD 852 (913)
T ss_pred HHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cccch
Confidence 665 3334556666666555555544444433332 3466677777888888889999999999999876 55678
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHH
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNE 395 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 395 (402)
+|..+...+.++|.-+.-.++++....--|.--..|-+
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 88889999999999888888988877654444444443
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=1.6e-11 Score=103.18 Aligned_cols=200 Identities=13% Similarity=0.064 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence 4556666677777777777777777776654 4456666777777777777777777777765432 334556666777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSI-KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
.+...|++++|.+.+++..+... ......+..+..++...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 77777777777777777765421 2234456666777777788888888887777654 334556777777777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 269 EAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888877765 233455666667777777888888777776654
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=7.6e-11 Score=111.50 Aligned_cols=250 Identities=13% Similarity=0.057 Sum_probs=169.2
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI---------AKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
++.++|...|++..+.. +.+...|..+..++.. .+++++|...+++..+.. +-+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 34678889999888765 4455666666655442 234788898888886542 44667777888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+... .+...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP-TRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999888864 33566788888888899999999999998888652 22233334444566678899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhC-CC
Q 041936 275 DEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAK-GW 352 (402)
Q Consensus 275 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~ 352 (402)
+++.+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| +++...++.+.+. ..
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 88876532223445677778888899999999998887654 333 334455555667666 4777777766553 11
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 353 VPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.+....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222222 33345556676666666 666653
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=3.8e-11 Score=100.90 Aligned_cols=201 Identities=10% Similarity=0.047 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041936 144 SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALV 223 (402)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (402)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 34556666777777777777777777765432 3345566667777777777777777777776653 33455666667
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 041936 224 AGFYKEEKYEDVNKVLQMMERYGM-KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNF 302 (402)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 302 (402)
..+...|++++|.+.+++...... +.....+..+...+...|++++|...+++....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 777777777777777777765321 223345555666677777777777777777665322 345666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 303 EEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 303 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
++|...+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777777665 223445555666666677777777777666544
No 48
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=2.9e-10 Score=104.25 Aligned_cols=294 Identities=15% Similarity=0.126 Sum_probs=192.6
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc--
Q 041936 81 AINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA-- 158 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 158 (402)
....+...|++++|++.++.-. ........+.......+.+.|+.++|..+|..+.+.+ +.+..-|..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNE-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhh-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 3445677888888888887754 3344445667777778888888888888888888876 55555556666555322
Q ss_pred ---CCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 041936 159 ---KDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS-SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYED 234 (402)
Q Consensus 159 ---~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 234 (402)
.+.+...++|+++... -|.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|....+.+-
T Consensus 88 ~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 2467777788877443 24333333332222222223 2345556667777754 356666666665555555
Q ss_pred HHHHHHHHHHC----C----------CCCChh--hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 041936 235 VNKVLQMMERY----G----------MKSGVS--MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN-SVTYSHFIYGFC 297 (402)
Q Consensus 235 a~~~~~~~~~~----~----------~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 297 (402)
..+++...... + -+|+.. ++..+.+.|-..|++++|++++++.++. .|+ +..|..-.+.+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 55555554321 1 123332 3455567777888888888888888876 444 567777788888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHcC
Q 041936 298 KDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTM--------KSLVTGLAGA 369 (402)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~ 369 (402)
+.|++++|.+.++........ |...-+..+..+.+.|++++|.+++....+.+..|....+ .-...+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876543 6677777778888888888888888888766543333222 3446677888
Q ss_pred CChHHHHHHHHHHHhc
Q 041936 370 SKVSEAKELIGLVKEK 385 (402)
Q Consensus 370 g~~~~a~~~~~~~~~~ 385 (402)
|++..|++.|..+.+.
T Consensus 319 ~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKH 334 (517)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8888888877776654
No 49
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=3.9e-09 Score=95.12 Aligned_cols=349 Identities=11% Similarity=0.015 Sum_probs=276.0
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHh---hcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCC--CCchHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAA---ALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPD--LQNERFHA 114 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 114 (402)
..+-.+.++=..+|+.+..-.++... ....|+..+...|-.=...|-..|..-.+..+....+.-+. .....++.
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 33444445555666666666666443 24457777888888888888888888888888877763332 22345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
.-...|.+.+.++-|..+|...++-- +.+...|......=-..|..++...+|++.... ++-....|-.....+-..
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKA 597 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhc
Confidence 77788889999999999999888764 566778888777777788999999999988654 345556677777788889
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
|++..|..++....+.. +.+...|...+........++.|..+|.+.... .|+...|..-+...--.++.++|.+++
T Consensus 598 gdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred CCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 99999999999998874 447788999999999999999999999988875 478888887777777789999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 041936 275 DEMLSKGMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV 353 (402)
Q Consensus 275 ~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (402)
++..+. -|+ ...|..+.+.+.+.++.+.|...|..-.+. +.-....|..+.+.=-+.|.+-.|..++++..-++ +
T Consensus 675 Ee~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 675 EEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 998876 455 457888888999999999999988876654 32345677777777788899999999999998776 6
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 354 PNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
-+...|-..|+.-.+.|+.+.|..+..+..+..|.+...|..-|-
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIW 795 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHH
Confidence 788999999999999999999999999999999999888876553
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.48 E-value=8.8e-11 Score=109.92 Aligned_cols=278 Identities=15% Similarity=0.113 Sum_probs=173.6
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCC
Q 041936 108 QNERFHAHSIILYGQANMTEHAVRTFKEMDEH---KLRHSV------GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIK 178 (402)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 178 (402)
+...+.+.+...+...|++.+|...|+..... ...++. .+-..+..++-..++.+.|.+.|..+.+. -
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---h 526 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---H 526 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---C
Confidence 44444455555555555555555555544332 011111 11112333344444555555555555443 2
Q ss_pred CCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHH
Q 041936 179 PDLDT-YNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSGVSMYNV 256 (402)
Q Consensus 179 p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 256 (402)
|.-+. |--+..+....+...+|..++....... ..++..++.+...+.+..++..|.+-|....+.- ..+|+.+.-.
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 22221 2222222223355666666666665542 3455666666667777777777777666555432 1245555555
Q ss_pred HHHHHHc------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 041936 257 RIHSLCK------------LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY 324 (402)
Q Consensus 257 ll~~~~~------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 324 (402)
|.+.|.+ .+..++|+++|.+....... |...-|-+.-.++..|++.+|..+|....+... -...+|
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~ 683 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVW 683 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCcee
Confidence 5555443 24567888888888876433 666677788888899999999999999998744 245678
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChh
Q 041936 325 FTMVYFMCKGGDYETALGFCKESIAK-GWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVD 391 (402)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 391 (402)
..+..+|...|++..|.++|+...+. .-.-++.+...|.+++.+.|.+.+|.+.+.......|.|..
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 88999999999999999999887765 44567888899999999999999999998888877555543
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.48 E-value=5e-10 Score=105.03 Aligned_cols=338 Identities=12% Similarity=0.074 Sum_probs=218.9
Q ss_pred CCChhHHHHHHHHh-hcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHH---HHhcCCHH
Q 041936 52 ESNPEKILEICRAA-ALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIIL---YGQANMTE 127 (402)
Q Consensus 52 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~ 127 (402)
.+++..|+.+|+.+ ...|...||+. -.+..++.+.|+.+.|..-|..... -.|.+...+..|... +.....+.
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralq-Ldp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQ-LDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHh-cChhhHHHHHHHHHHHHHccchHHHH
Confidence 45778888888775 35556666653 2333556777888888888877763 233444444333322 22334456
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041936 128 HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIK-PDLDTYNRVIKAFCESSDSSSAYSILAE 206 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~ 206 (402)
.+..++...-..+ +-++...+.|.+.|.-.|+++.++.+...+.+..... .-...|..+.++|...|++++|..+|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 6777777666555 5677788888888888899999888888876542111 1234578888889999999999999888
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC----CHHHHHHHHHHHHHCCC
Q 041936 207 MDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLR----KCAEAKALLDEMLSKGM 282 (402)
Q Consensus 207 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~ 282 (402)
..+..-.--...+.-+.+.+.+.|+++.+...|+.+.+.. +.+..+...+...|...+ ..++|..++.+..+.-
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 8776322113344567788888999999998888887764 445556666666666554 4566677776666653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC---CCCCC
Q 041936 283 KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS----NSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK---GWVPN 355 (402)
Q Consensus 283 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~ 355 (402)
..|...|..+...+...+-+ .++.+|.... ..+..+.....|.+.......|++.+|...|+..... ...++
T Consensus 411 ~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 23666777776666554433 3366665443 3455567778888888888888888888888877654 11222
Q ss_pred H------HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 356 F------TTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 356 ~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
. .+--.+...+-..++++.|.+.|..+.+.+|.=+..|--+
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 2 1222344555566778888888888777666555554433
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=6.1e-11 Score=112.12 Aligned_cols=235 Identities=12% Similarity=0.084 Sum_probs=171.6
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHH---------hcCChhHHHHHHHH
Q 041936 142 RHSVGAFNALLLALTI-----AKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFC---------ESSDSSSAYSILAE 206 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~---------~~~~~~~a~~~~~~ 206 (402)
..+...|...+.+... .++.++|...|++..+. .|+ ...|..+..++. ..+++++|...+++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 4566666666655322 24689999999998754 444 455666655544 23457899999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 041936 207 MDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS 286 (402)
Q Consensus 207 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 286 (402)
..+.. +-+...+..+..++...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +.
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 99874 4467788888888999999999999999999876 455677888889999999999999999999987433 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 366 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (402)
..+..++..+...|++++|...+++.......-+...+..+..++...|+.++|...++++.... +.+....+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 23334455566789999999999998765322235556777888889999999999998876642 23344455566667
Q ss_pred HcCCChHHHHHHHHHHHhc
Q 041936 367 AGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 367 ~~~g~~~~a~~~~~~~~~~ 385 (402)
...| +.|...++.+.+.
T Consensus 486 ~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 486 CQNS--ERALPTIREFLES 502 (553)
T ss_pred hccH--HHHHHHHHHHHHH
Confidence 7777 4777777776664
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1e-10 Score=100.78 Aligned_cols=276 Identities=12% Similarity=0.050 Sum_probs=205.6
Q ss_pred HHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHh--cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 84 KLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQ--ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
.+.+.|+++.|.++++-+.+..........+.+...+.- ..++..|.++-+.....+ .-+......-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 467889999999998888755444444444444433333 346777777777665443 33343333333445567999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNR---VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKV 238 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (402)
++|.+.|.+.... |...-.. +.-.+-..|+.++|++.|-++... +.-+..+...+.+.|-...+..+|+++
T Consensus 507 dka~~~ykeal~n-----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 507 DKAAEFYKEALNN-----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred HHHHHHHHHHHcC-----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 9999999988643 3322222 223466789999999999877543 334677888888999999999999998
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041936 239 LQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 318 (402)
+.+.... ++.|......|...|-+.|+-..|.+.+-+-..- ++.+..+..+|...|....-+++++.+|++..- +.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 8766543 4677888999999999999999998877655443 445788999999999999999999999998765 68
Q ss_pred CCHHhHHHHHHHH-HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 041936 319 PNSSVYFTMVYFM-CKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASK 371 (402)
Q Consensus 319 ~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (402)
|+..-|..++..| .+.|++++|+++++...++ ++.|..+...|++.+...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999999888766 5689999999999988764 68899999999999988775
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=4.7e-10 Score=97.56 Aligned_cols=323 Identities=13% Similarity=0.070 Sum_probs=199.3
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLD-RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
..+.++.|++++.++.. ..|| +..|+....+|...|+|+++.+--.+..+- .+.-...+..-..++-..|++++|
T Consensus 127 ~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl-~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL-NPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHhhccHHHH
Confidence 45688999999999864 3455 788999999999999999998887776632 222233344445566677777766
Q ss_pred HHH----------------------HHH---------hHhCC--CCCCHHHHHHHHHHHH--------------------
Q 041936 130 VRT----------------------FKE---------MDEHK--LRHSVGAFNALLLALT-------------------- 156 (402)
Q Consensus 130 ~~~----------------------~~~---------~~~~~--~~~~~~~~~~l~~~~~-------------------- 156 (402)
+.- ++. +.+.+ +-|+.....+....+.
T Consensus 203 l~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~ 282 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAE 282 (606)
T ss_pred HHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHH
Confidence 431 111 11011 1133222222222111
Q ss_pred -------------------------------------------------------HcCCHHHHHHHHHHchhhcCCCCCH
Q 041936 157 -------------------------------------------------------IAKDYKEVKRVFIEFPKTYGIKPDL 181 (402)
Q Consensus 157 -------------------------------------------------------~~~~~~~a~~~~~~~~~~~~~~p~~ 181 (402)
-.|+.-.|.+-|+..++-. +.+.
T Consensus 283 ~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--~~~~ 360 (606)
T KOG0547|consen 283 ALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--PAFN 360 (606)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--cccc
Confidence 1123333333333333211 1111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 041936 182 DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSL 261 (402)
Q Consensus 182 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (402)
..|--+..+|....+.++..+.|.+..+.+ +-|+.+|..-.+.+.-.+++++|..=|++.+... +-+...|-.+.-+.
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCAL 438 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHH
Confidence 114445556666666666677776666654 3355666666666666677777777777776654 34455566666666
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHhH--HHHHHHHHcc
Q 041936 262 CKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS-----PNSSVY--FTMVYFMCKG 334 (402)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~--~~l~~~~~~~ 334 (402)
.+.+.++++...|++.++. ++-.+..|+.....+...++++.|.+.|+..++.... .+...+ ..++.. .=.
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk 516 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chh
Confidence 6777888888888888776 3335677888888888888888888888887764211 122111 122211 123
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 335 GDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
+++..|..++.+.++.+ +-....|..|...-.+.|+.++|+++|++...
T Consensus 517 ~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 78888888888888775 44667788888888999999999999987654
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=2.3e-11 Score=112.52 Aligned_cols=247 Identities=15% Similarity=0.138 Sum_probs=167.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 041936 70 ESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFN 149 (402)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (402)
|+.|++.+|..+|..|+..|+.+.|- +|.-|.....+.+...++.++......++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 78899999999999999999999998 9999998888999999999999999999877664 68889999
Q ss_pred HHHHHHHHcCCHHH---HHHHHHHchhh---cCCCCCHHHH--------------HHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 150 ALLLALTIAKDYKE---VKRVFIEFPKT---YGIKPDLDTY--------------NRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 150 ~l~~~~~~~~~~~~---a~~~~~~~~~~---~~~~p~~~~~--------------~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.|..+|...||+.. +.+.+..+... .|+-.....+ ...+....-.|-++.+.+++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999998755 33322222111 1111111111 1122222233344444444433322
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041936 210 KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTY 289 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 289 (402)
.... . ++...++-+..... -.+++........-.|++.+|.+++.+-...|+++.|..++.+|.+.|.+.+.+-|
T Consensus 168 sa~~-~--p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 168 SAWN-A--PFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccc-c--hHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 2100 0 11112333333222 23333332222111488888989988888889999999999999999888888877
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 336 (402)
..++-+ .++...++.++.-|.+.|+.|+..|+...+..+.+.|.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777755 77888888888888888999999888888877777554
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2.1e-10 Score=94.85 Aligned_cols=233 Identities=11% Similarity=0.086 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..-..+..+|.+.|-+.+|.+-|+.-.+. .|-+.||-.|-.+|.+..+++.|+.+|.+-.+. .+-|+....-+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 44456788999999999999999998776 678889999999999999999999999988654 24444445567788
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHH
Q 041936 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEA 270 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 270 (402)
+-..++.++|.++|+...+.. +.+++....+...|.-.++++-|+..|+++.+.|+ .+...|+.+.-+|.-.++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhh
Confidence 888999999999999998874 55777888888889999999999999999999994 6677888888899999999999
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 041936 271 KALLDEMLSKGMKPNS--VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESI 348 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (402)
+.-|++.......|+. ..|-.+....+..||+..|.+.|+.....+.. +...++.|...-.+.|++++|..++....
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999998876555553 46777888888999999999999998876533 57889999888899999999999999887
Q ss_pred hC
Q 041936 349 AK 350 (402)
Q Consensus 349 ~~ 350 (402)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 64
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=9.2e-10 Score=95.00 Aligned_cols=291 Identities=13% Similarity=0.141 Sum_probs=211.5
Q ss_pred CCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-CCcchHHHHHHHhhcCCCCCchHHHH
Q 041936 36 LTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEA-NYFNGISQYLEELKTRPDLQNERFHA 114 (402)
Q Consensus 36 ~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~ 114 (402)
+.-....+.+..++ .+|+.+.|.++++......+...+...-+.-.-.+.+. .++..|.++-+... ....-+.....
T Consensus 417 la~dlei~ka~~~l-k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al-n~dryn~~a~~ 494 (840)
T KOG2003|consen 417 LAIDLEINKAGELL-KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL-NIDRYNAAALT 494 (840)
T ss_pred hhhhhhhhHHHHHH-hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh-cccccCHHHhh
Confidence 33334445555544 47899999999998887765544444444433334444 48888888877766 22222332222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
.-.......|++++|.+.|++.+..+-.-....|| +.-.+-..|++++|++.|-++..- +.-+......+...|--.
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i--l~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIANIYELL 571 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHh
Confidence 22233446799999999999988654222233333 333567889999999999877321 134667777888889999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
.+...|++++.+.... ++.|+.+.+.|...|-+.|+-.+|.+.+-.--.. ++-+..+...|...|....-+++++.+|
T Consensus 572 ed~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred hCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999887665 6778899999999999999999998876554332 4667888888888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 041936 275 DEMLSKGMKPNSVTYSHFIYGFC-KDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 275 ~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 336 (402)
++..- +.|+..-|..++..|. +.|++.+|+++|+....+ +.-|......|++.+...|-
T Consensus 650 ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 650 EKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 98764 4899999998887665 589999999999999876 55578888889988888774
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=3.4e-09 Score=97.30 Aligned_cols=291 Identities=16% Similarity=0.169 Sum_probs=203.1
Q ss_pred HHHhcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhc--
Q 041936 47 TLLKSESNPEKILEICRAAALTPESHLD-RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQA-- 123 (402)
Q Consensus 47 ~~l~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 123 (402)
.++...|++++|++.+..... ..+| ...+......+.+.|+.++|..++..+..+ .|.+...|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhhhcc
Confidence 567888999999999976542 3344 445667788899999999999999999954 567777787777776333
Q ss_pred ---CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 041936 124 ---NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYK-EVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS 199 (402)
Q Consensus 124 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 199 (402)
.+.+...++|+++.+.- |.......+.-.+.....+. .+...+..+.++ |+|+ +|+.+-..|......+-
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChhHHHH
Confidence 35778888999887653 44333333322222222333 344444555433 5543 56677777776666666
Q ss_pred HHHHHHHHHhC----C----------CCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 041936 200 AYSILAEMDRK----S----------IKPNA--SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK 263 (402)
Q Consensus 200 a~~~~~~~~~~----g----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (402)
..+++...... + -+|+. .++.-+...|...|++++|++.+++.++.. +..+..|..-.+.+-+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 66666665432 1 12333 244566777889999999999999999875 3347788888999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh------H--HHHHHHHHccC
Q 041936 264 LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSV------Y--FTMVYFMCKGG 335 (402)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~--~~l~~~~~~~g 335 (402)
.|++.+|.+.++........ |-..=+..+..+.+.|++++|.+++..+...+..|-... | .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887443 666666778888899999999999999988765433222 1 34567888999
Q ss_pred ChHHHHHHHHHHHh
Q 041936 336 DYETALGFCKESIA 349 (402)
Q Consensus 336 ~~~~a~~~~~~~~~ 349 (402)
++..|++.|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 98888877665543
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.8e-12 Score=79.44 Aligned_cols=49 Identities=31% Similarity=0.730 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 041936 179 PDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFY 227 (402)
Q Consensus 179 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (402)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=1.9e-08 Score=87.59 Aligned_cols=333 Identities=11% Similarity=0.055 Sum_probs=211.0
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAV 130 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 130 (402)
++++..+|..+|+.+.... ..+...|-.-+..-.+...+..|..+++..... .|.-..++...+.+=-..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHH
Confidence 3456677888888776543 234557777788888888999999999988843 3444456666676677789999999
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 131 RTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
++|+...+- .|+...|++.|..=.+.+.++.|..+|+..+ -+.|++.+|--..+.=-++|++..+..+|+...+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999987765 7999999999998888888888888888875 33577777666555555555555555444443321
Q ss_pred -C------------------------------------------------------------------------------
Q 041936 211 -S------------------------------------------------------------------------------ 211 (402)
Q Consensus 211 -g------------------------------------------------------------------------------ 211 (402)
|
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 0
Q ss_pred -CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh---------------------------------------
Q 041936 212 -IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGV--------------------------------------- 251 (402)
Q Consensus 212 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------------------------- 251 (402)
-+.|-.+|--.+..-...|+.+...++|++.+.. ++|-.
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 0222233333444444556666666666665543 23311
Q ss_pred -----hhHHH----HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 041936 252 -----SMYNV----RIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSS 322 (402)
Q Consensus 252 -----~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 322 (402)
.||.. ....-.++.++..|.+++...+ |..|-..+|...|..-.+.+++|.+.+++++.++-+.. |..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhH
Confidence 11111 1111112233334444433332 34556666666666667777888888888888876433 566
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAKG-WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
+|......=...|+.+.|..+|+-+++.. +......|...|..-...|.++.|..+++.+.+. .+...+|-++
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-t~h~kvWisF 546 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-TQHVKVWISF 546 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh-cccchHHHhH
Confidence 77777776677788888888888877752 2233455666666667788888888888888775 2223355443
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2.4e-12 Score=78.91 Aligned_cols=47 Identities=38% Similarity=0.771 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444443
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.5e-09 Score=93.24 Aligned_cols=276 Identities=9% Similarity=-0.024 Sum_probs=216.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
+..+...-..-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++++.. |-...+|-.+.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHH
Confidence 33445555666778899999999999998876 7888888888889999999888877777776543 55678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
--|.-.|+..+|.+.|.+..... +.=...|-.....|.-.|.-++|+..|...-+.- +-..--+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 88888999999999999876542 1124578888999999999999999998776531 111111223344577889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CCHHhHHHHHHHHHccCChHHHHH
Q 041936 269 EAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GL-S-PNSSVYFTMVYFMCKGGDYETALG 342 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~-~~~~~~~~l~~~~~~~g~~~~a~~ 342 (402)
.|.+.|....... +-|+...+-+.-.....+.+.+|..+|+..... +- . .-..+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999988763 336777888877777889999999999987732 11 1 134568899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChh
Q 041936 343 FCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVD 391 (402)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 391 (402)
.+++.+... +.+..++.++.-.|...|+++.|.+.|.+..-..|.|..
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999998875 778999999999999999999999999998886555543
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5e-08 Score=83.53 Aligned_cols=306 Identities=12% Similarity=0.027 Sum_probs=212.3
Q ss_pred HHHHHHHHhc--CCcchHHHHHHHhh-cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 79 SIAINKLSEA--NYFNGISQYLEELK-TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 79 ~~l~~~~~~~--~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
..-+.++++. ++-..+...+-.+. ....+.+......+..++...|+.++|+..|++....+ +-+........-.+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHH
Confidence 3334444433 33344444443333 24456677888888888888888888888888876544 33333444444556
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDV 235 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 235 (402)
.+.|+.+....+...+.... +.+...|-.-.......+++..|+.+-++.++.. +-+...|-.-...+...+++++|
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHH
Confidence 67788877777766664221 2344445555555666778888888888887763 33455666666778888999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHH
Q 041936 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFI-YGFC-KDGNFEEAKKFYRIMS 313 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~m~ 313 (402)
.-.|+..+... +-+..+|.-++.+|...|++.+|...-+..... +..+..+...+. ..|. ...--++|.++++.-.
T Consensus 354 ~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 354 VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 88888887654 457788999999999999999888777766554 223455555442 2222 2233467888888776
Q ss_pred hCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhh
Q 041936 314 NSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDT 392 (402)
Q Consensus 314 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 392 (402)
. +.|+ ....+.+...|...|..+.+..++++.... .||....+.|.+.+...+.+.+|.+.|.......|.|..+
T Consensus 432 ~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 432 K--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred c--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 6 3455 345677788889999999999999998875 7899999999999999999999999999998877777665
Q ss_pred HH
Q 041936 393 WN 394 (402)
Q Consensus 393 ~~ 394 (402)
..
T Consensus 508 l~ 509 (564)
T KOG1174|consen 508 LR 509 (564)
T ss_pred HH
Confidence 43
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=3.9e-09 Score=91.68 Aligned_cols=229 Identities=12% Similarity=0.079 Sum_probs=155.1
Q ss_pred hcCCHHHHHHHHHHhHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChh
Q 041936 122 QANMTEHAVRTFKEMDEHK-LRH--SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 198 (402)
..+..+.++.-+.++.... ..| ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHH
Confidence 3467788888888887543 122 24567778888899999999999998886542 445778899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 199 SAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
+|.+.|++..+.. +-+..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+..
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999988753 2346678888888888999999999999888764 433322222333455678899999997655
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-CHHhHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 041936 279 SKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS---GL--SP-NSSVYFTMVYFMCKGGDYETALGFCKESIAKGW 352 (402)
Q Consensus 279 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 352 (402)
... .|+...+ .+. ....|+...+ ..+..+.+. .. .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 193 ~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~- 266 (296)
T PRK11189 193 EKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN- 266 (296)
T ss_pred hhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 432 3332222 222 2334555443 344444432 11 11 23578888888889999999999999888765
Q ss_pred CCCHHHHHH
Q 041936 353 VPNFTTMKS 361 (402)
Q Consensus 353 ~~~~~~~~~ 361 (402)
+|+..-+..
T Consensus 267 ~~~~~e~~~ 275 (296)
T PRK11189 267 VYNFVEHRY 275 (296)
T ss_pred CchHHHHHH
Confidence 445444433
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=4.2e-09 Score=95.64 Aligned_cols=245 Identities=15% Similarity=0.121 Sum_probs=179.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh----cCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 041936 140 KLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT----YGI-KPDLD-TYNRVIKAFCESSDSSSAYSILAEMDRK--- 210 (402)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 210 (402)
+.+.-..+...+...|...|++++|+.+++...+. .|. .|... ..+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33344456667899999999999999999887543 232 23333 3445778889999999999999988653
Q ss_pred --C--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH---C--C-CCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 211 --S--IKPNASSFGALVAGFYKEEKYEDVNKVLQMMER---Y--G-MKSGV-SMYNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 211 --g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
| .+.-..+++.|..+|.+.|++++|...+++..+ . + ..|.+ ..++.+...++..+++++|..+++...+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2 122245677888889999999998888876643 1 1 12333 3356677788899999999999987654
Q ss_pred C---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHhHHHHHHHHHccCChHHHHHHHH
Q 041936 280 K---GMKPN----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GL--SP-NSSVYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 280 ~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
. -+.++ ..+++.+...|...|++++|.+++++.+.. +- .+ ....++.+...|.+.+++++|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 2 12222 357999999999999999999999988754 11 12 24567888899999999998988887
Q ss_pred HHHhC----C--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 346 ESIAK----G--WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 346 ~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
+...- | .+-...+|..|...|...|+++.|.++.+.+..
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 75432 2 233457889999999999999999999988764
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.8e-08 Score=88.02 Aligned_cols=303 Identities=13% Similarity=0.031 Sum_probs=174.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
.+....+-|.+.|.+++|++++.+.+.. .+..+.+|.....+|...|+++++.+.-.+.++.+ +.-+..+..-.+++-
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l-~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL-CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc-CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 3455566788999999999999999843 22227789999999999999999999888877764 333445555566666
Q ss_pred HcCCHHHHHH----------------------HHHHc--------hh--hcCCCCCHHHHHHHHHHHHh-----------
Q 041936 157 IAKDYKEVKR----------------------VFIEF--------PK--TYGIKPDLDTYNRVIKAFCE----------- 193 (402)
Q Consensus 157 ~~~~~~~a~~----------------------~~~~~--------~~--~~~~~p~~~~~~~li~~~~~----------- 193 (402)
..|++++|+. ++++. .+ +..+-|+.....+....+..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 6666655432 22111 01 11223443333332222110
Q ss_pred --------------cC---ChhHHHHHHHHHHhC---CCCCC---------HhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 194 --------------SS---DSSSAYSILAEMDRK---SIKPN---------ASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 194 --------------~~---~~~~a~~~~~~~~~~---g~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
.+ .+..|.+.+.+-... ....+ ..+...-...+.-.|+.-.|..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 00 111122211111100 00111 11222222233445677777777777766
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 041936 245 YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY 324 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 324 (402)
... .+...|--+..+|...++.++....|.+....+.. +..+|..-.+.+.-.+++++|..=|++.+..... +...|
T Consensus 355 l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~ 431 (606)
T KOG0547|consen 355 LDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAY 431 (606)
T ss_pred cCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHH
Confidence 542 22222556666677777777777777777665433 4555666666666667777777777766664221 34555
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 325 FTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
..+..+..+.+++++++..|++.+++ ++..++.|+.....+...++++.|.+.|+...+.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 55555666666777777777776664 4556667777777777777777777777766654
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=5.5e-09 Score=82.53 Aligned_cols=194 Identities=12% Similarity=0.029 Sum_probs=90.0
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC
Q 041936 81 AINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD 160 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (402)
+.-.|.+.|++..|.+-+++.+ ..++.....+..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL-~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKAL-EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3334445555555555555544 2234444444444445555555555555555544443 3344444555555555555
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQ 240 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (402)
+++|...|++.........-..+|..+.-+..+.|+.+.|...|++.++.. +-...+...+.....+.|++..|...++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555544332222233444445445555555555555555544432 1123334444444445555555555554
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 241 MMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
.....+. ++..+.-..|+.--..|+.+.+.+.=..+.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444442 444444444444444444444444433333
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=1e-07 Score=85.74 Aligned_cols=304 Identities=10% Similarity=0.008 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhh-cCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELK-TRPDLQN-ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
..|..+...+...|+.+.+.+.+.... ......+ ..........+...|++++|.+.+++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 455666666667788888766666554 2222222 2222233445778899999999999988764 555555542 22
Q ss_pred HHH----HcCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 041936 154 ALT----IAKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK 228 (402)
Q Consensus 154 ~~~----~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (402)
.+. ..+..+.+.+.+.... ...|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA---PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC---cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 222 2455555666655421 22333 3445566778889999999999999999874 4456778888999999
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCC
Q 041936 229 EEKYEDVNKVLQMMERYGM-KSGV--SMYNVRIHSLCKLRKCAEAKALLDEMLSKGM-KPNSVTY-S--HFIYGFCKDGN 301 (402)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~~~ 301 (402)
.|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999998877532 1222 3455788889999999999999999865422 1122111 1 22333334444
Q ss_pred HHHHHHH--HHHHHhCCC--CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHcC
Q 041936 302 FEEAKKF--YRIMSNSGL--SPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV------P--NFTTMKSLVTGLAGA 369 (402)
Q Consensus 302 ~~~a~~~--~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~ 369 (402)
.+.+..+ +........ ............++...|+.++|..+++.+...... . .........-++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333332 221111110 111122235667788899999999999988764211 0 112222223345689
Q ss_pred CChHHHHHHHHHHHhc
Q 041936 370 SKVSEAKELIGLVKEK 385 (402)
Q Consensus 370 g~~~~a~~~~~~~~~~ 385 (402)
|+.++|.+.+......
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=3.3e-09 Score=96.37 Aligned_cols=245 Identities=17% Similarity=0.217 Sum_probs=172.4
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-----C-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHchhh----
Q 041936 106 DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH-----K-LRHSVG-AFNALLLALTIAKDYKEVKRVFIEFPKT---- 174 (402)
Q Consensus 106 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 174 (402)
.|.-..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3444455666788899999999999999887653 2 123332 3445777888899999999999888542
Q ss_pred cCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCC-CCH-hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 175 YGI--KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK-----SIK-PNA-SSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 175 ~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
.|- +.-..+++.|...|.+.|++++|...++...+. |.. |.. ..++.+...|...+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 111 122356777888899999999999998876542 211 122 23566777788889999999998866441
Q ss_pred ---CCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 246 ---GMKSG----VSMYNVRIHSLCKLRKCAEAKALLDEMLSK-----G-MKPN-SVTYSHFIYGFCKDGNFEEAKKFYRI 311 (402)
Q Consensus 246 ---~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (402)
-+.++ ..+++.+...|...|++++|.+++++.+.. | ..+. ...++.+...|.+.+++++|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 12222 457888889999999999999999987653 1 1222 34677788888888899989888887
Q ss_pred HHh----CCCC-CC-HHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 312 MSN----SGLS-PN-SSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 312 m~~----~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
... .|.. |+ ..+|..|...|...|+++.|.++.+.....
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 542 2322 23 467888999999999999999988877664
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=8.7e-09 Score=89.50 Aligned_cols=219 Identities=14% Similarity=0.085 Sum_probs=133.3
Q ss_pred cCCcchHHHHHHHhhcCCC---CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 041936 88 ANYFNGISQYLEELKTRPD---LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
.+..+.++.-+.++..... ......|......|...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455666666666663221 1123456666667778888888888888877765 56677788888888888888888
Q ss_pred HHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 165 KRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
...|+...+.. +-+..+|..+...+...|++++|.+.|+...+.. |+..........+...++.++|...|.+...
T Consensus 118 ~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888776431 2245667777777777888888888888777653 3322222222233456678888888865543
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041936 245 YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK---GM--KP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
.. .++...+ .+.. ...|+...+ +.+..+.+. .+ .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 2322211 2222 234444433 244444322 11 11 23467777788888888888888888887654
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.3e-08 Score=90.34 Aligned_cols=285 Identities=13% Similarity=0.076 Sum_probs=208.7
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+........+.+-..+++.+..++.+.+. ..+++....+..-|..+...|+..+-..+=.++.+.- |....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~ll-e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELL-EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHH-hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44556666677777888999999888888 3456666666666778888888888777777777664 666778888887
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKY 232 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 232 (402)
-|.-.|...+|.+.|.+.. .+.|. ...|-.....|+-.|..+.|+..|...-+. ++-...-+--+.--|.+.+..
T Consensus 321 YYl~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 8888889999999988764 22333 346788888888888889988888776554 111222233445567788889
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHHhcCCHHHHH
Q 041936 233 EDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK--GM---KP-NSVTYSHFIYGFCKDGNFEEAK 306 (402)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~p-~~~~~~~l~~~~~~~~~~~~a~ 306 (402)
+.|.+.|.+..... +-|+...+-+.-.....+.+.+|..+|+..... .+ .+ -..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999998887654 566777777777777778888998888877632 01 11 2346788888899999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 041936 307 KFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 368 (402)
Q Consensus 307 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (402)
..++...... .-+..++.++.-.|...|+++.|.+.|.+.+.. .|+..+...++..+..
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 9999888763 337788888888888899999999999888754 6777666666665443
No 72
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=1.3e-07 Score=82.40 Aligned_cols=310 Identities=11% Similarity=0.098 Sum_probs=209.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...|..-.+.-...+++..|..+|+..+ ..+..+..++...+.+=.+...+..|..+++.....= |.-...|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERAL-dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERAL-DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 33445555555666788999999999998 4456777888888888899999999999999987652 333356777777
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE 233 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 233 (402)
+=-..|++..|.++|+... ...|+...|.+.|+.=.+-+.++.|..+|++..-. .|+..+|--....-.+.|...
T Consensus 150 mEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 7778899999999999986 45999999999999999999999999999998864 478888777766666677766
Q ss_pred HHHHHHHHHHHC-------------------------------------------------------------C------
Q 041936 234 DVNKVLQMMERY-------------------------------------------------------------G------ 246 (402)
Q Consensus 234 ~a~~~~~~~~~~-------------------------------------------------------------~------ 246 (402)
.|..+|+...+. |
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 666666544110 0
Q ss_pred -------------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH-----HHH---HhcCCHH
Q 041936 247 -------------MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS--VTYSHFI-----YGF---CKDGNFE 303 (402)
Q Consensus 247 -------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~-----~~~---~~~~~~~ 303 (402)
-+-|-.+|--.++.-...|+.+...++|++.+.. ++|-. ..|...| .++ ....+.+
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 0223344445555556667888888888887765 34421 1121111 111 2356777
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHH----HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMV----YFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (402)
.+.++|+..++. ++-...||..+- ..-.++.++..|.+++..++ |.-|...+|...|..-.+.+++|....++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777766652 222233333222 22234556666666666555 34566667776666666777777777777
Q ss_pred HHHHhcCCCChhhHH
Q 041936 380 GLVKEKFTKNVDTWN 394 (402)
Q Consensus 380 ~~~~~~~~~~~~~~~ 394 (402)
++..+-.|.|..+|.
T Consensus 461 Ekfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 461 EKFLEFSPENCYAWS 475 (677)
T ss_pred HHHHhcChHhhHHHH
Confidence 777766666666664
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=2.3e-07 Score=83.93 Aligned_cols=326 Identities=16% Similarity=0.196 Sum_probs=189.7
Q ss_pred HhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 041936 49 LKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEH 128 (402)
Q Consensus 49 l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 128 (402)
|...|+-++|.+..+..... ..-+.+.|..+.-..-...++++|++.|.... ...+.+..++..+...-++.++++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl-~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL-KIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 45677888888888776543 22355677777666666789999999999888 4567788888888888888888888
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH------HHHHhcCChhHHHH
Q 041936 129 AVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI------KAFCESSDSSSAYS 202 (402)
Q Consensus 129 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li------~~~~~~~~~~~a~~ 202 (402)
.......+.+.. +.....|..+..++.-.|+...|..++++..+...-.|+...|.-.. ....+.|..++|.+
T Consensus 128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 888888877764 44556777888888888999999999988865543345555543322 22334455555555
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-HHHccCCHHHHH-HHHH-----
Q 041936 203 ILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH-SLCKLRKCAEAK-ALLD----- 275 (402)
Q Consensus 203 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~-~~~~----- 275 (402)
.+..-... +.-....-.+-...+.+.+++++|..++..++..+ ||..-|...+. ++.+-.+..++. .+|.
T Consensus 207 ~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 207 HLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 44443322 11111112223344455555556655555555543 44333332222 111111111111 1111
Q ss_pred -----------------------------HHHHCCC--------------------------------------------
Q 041936 276 -----------------------------EMLSKGM-------------------------------------------- 282 (402)
Q Consensus 276 -----------------------------~~~~~~~-------------------------------------------- 282 (402)
.+.+.|+
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1111111
Q ss_pred --CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 041936 283 --KPNSV--TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFT 357 (402)
Q Consensus 283 --~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (402)
+|... ++-.++..+-+.|+++.|..+++..+.+ .|+ ...|..-.+.+...|++++|..++++..+.+ .+|..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~ 440 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA 440 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence 22222 2334556666677777777777766653 344 2344444566666777777777777776655 45554
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
.-..-.....+.++.++|.++......
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 444555556666777777766665544
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=3.4e-08 Score=78.12 Aligned_cols=198 Identities=11% Similarity=0.008 Sum_probs=138.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
....+...|.+.|++..|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..... +-+-...|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHH
Confidence 34456667788888888888888887776 5666777778888888888888888887775432 33445667777777
Q ss_pred HhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHH
Q 041936 192 CESSDSSSAYSILAEMDRKS-IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEA 270 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 270 (402)
|..|.+++|.+.|++....- ...-..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 77888888888887776652 22234567777777777788888888887777654 33344566666777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 271 KALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
...++.....+. ++..+.-..|+.-...|+.+.+-++=..+..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777777776654 5666666666666677777776666555554
No 75
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=1.8e-07 Score=78.41 Aligned_cols=311 Identities=11% Similarity=0.056 Sum_probs=230.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHH-H
Q 041936 71 SHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAF-N 149 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~ 149 (402)
.+.+..-.--+-..+...|++..|+.-|.... .+++.+...+..-...|...|+-..|+.-+...++. +||-..- .
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAv-e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAV-EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 33455566667788888999999999999888 556666666666677899999999999999998876 5664332 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH--------------HHH--HHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041936 150 ALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL--------------DTY--NRVIKAFCESSDSSSAYSILAEMDRKSIK 213 (402)
Q Consensus 150 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--------------~~~--~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 213 (402)
.-...+.+.|.++.|..-|+..++. .|+. ..| ...+..+...|+...|+.....+++.. +
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 3345788999999999999988755 3321 112 223456677899999999999999874 5
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH----H
Q 041936 214 PNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVT----Y 289 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~ 289 (402)
.|...|..-..+|...|++..|+.=++...+.. ..++.++-.+-..+...|+.+.++...++..+. .||... |
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH
Confidence 688888888999999999999998888776654 355666666777888899999999999888775 555432 2
Q ss_pred HHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh---HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 041936 290 SHF---------IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSV---YFTMVYFMCKGGDYETALGFCKESIAKGWVPNFT 357 (402)
Q Consensus 290 ~~l---------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (402)
-.+ +......++|.++.+..+...+......... +..+-.++...|++.+|++...+.++.. +.|..
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHH
Confidence 111 2233456778888888888777643322233 3445566677889999999999998864 45588
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhh
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDT 392 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 392 (402)
++.--..+|.-...+++|+.-|+...+..+.|...
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 88888999999999999999999998876665544
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.20 E-value=2.7e-09 Score=91.36 Aligned_cols=151 Identities=15% Similarity=0.245 Sum_probs=70.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 041936 224 AGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK----D 299 (402)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 299 (402)
.++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCc
Confidence 3344455555555554321 23334444555555555555555555555543 112 222223333322 2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-HHHHHH
Q 041936 300 GNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKV-SEAKEL 378 (402)
Q Consensus 300 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~ 378 (402)
+.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+..+.+ +-++.+...++.+....|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 2455566666655443 33455555555555555566666666555555443 33444444555555555554 444455
Q ss_pred HHHHHhc
Q 041936 379 IGLVKEK 385 (402)
Q Consensus 379 ~~~~~~~ 385 (402)
+.++...
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 5555543
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=1.2e-06 Score=79.52 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=39.7
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhh
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELK 102 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (402)
.+...++.+.+.+-|+.++.+++....- ++..-.--|..++..+++++|.+.+....
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVL 196 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence 3456777778888888888777766433 33445666777788888888877776665
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.9e-07 Score=80.12 Aligned_cols=344 Identities=13% Similarity=0.064 Sum_probs=208.1
Q ss_pred HHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCH
Q 041936 47 TLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMT 126 (402)
Q Consensus 47 ~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 126 (402)
....+.+++++|.+......... +-|...+..-+-++.+.+.|++|+.+.+.-. ........+..=..+..+.+..
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~--~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNG--ALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc--hhhhcchhhHHHHHHHHHcccH
Confidence 34455668888888888776553 3345566777778888899999986665532 1111111212233445678888
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcC---------------------------CCC
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG---------------------------IKP 179 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~p 179 (402)
|+|+..++-.. +.+..+...-...+.+.|++++|..+|+.+.+... ..|
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 88888888332 23344566666778888888888888888744310 111
Q ss_pred CHHHHHHHH---HHHHhcCChhHHHHHHHHHHhCC-------CCCCH------h-hHHHHHHHHhccCCHHHHHHHHHHH
Q 041936 180 DLDTYNRVI---KAFCESSDSSSAYSILAEMDRKS-------IKPNA------S-SFGALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 180 ~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~g-------~~~~~------~-~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
..+|..+- -.++..|++.+|+++++...+.+ -.-+. . .-..+.-++-..|+.++|.++|...
T Consensus 172 -e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 172 -EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred -cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 11333333 34557899999999998883221 01011 1 1223445566789999999999888
Q ss_pred HHCCCCCChhhH---------------------------------------------------HHHHHHHHcc-------
Q 041936 243 ERYGMKSGVSMY---------------------------------------------------NVRIHSLCKL------- 264 (402)
Q Consensus 243 ~~~~~~~~~~~~---------------------------------------------------~~ll~~~~~~------- 264 (402)
++.. ++|.... +.++..|...
T Consensus 251 i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7655 2322110 1111111111
Q ss_pred -------------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------H
Q 041936 265 -------------------------RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYR--------I 311 (402)
Q Consensus 265 -------------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 311 (402)
..+.++.+++...-+....-.....-.+++.....|+++.|.+++. .
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 1122233333333332111123344556677788999999999999 5
Q ss_pred HHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHH----HHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 312 MSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK--GWVPNFTT----MKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 312 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+.+.+..| .+...++..+.+.++.+.|..++.+.++- .-.+.... +.-+...-.+.|+.++|..+++++.+.
T Consensus 410 ~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 410 ILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 55544444 45566777788888777777777766542 11122233 333344445789999999999999999
Q ss_pred CCCChhhHHHHHhcCCC
Q 041936 386 FTKNVDTWNEIEAGLPQ 402 (402)
Q Consensus 386 ~~~~~~~~~~l~~~~~~ 402 (402)
.++|..+.-.++.+|++
T Consensus 488 n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 488 NPNDTDLLVQLVTAYAR 504 (652)
T ss_pred CCchHHHHHHHHHHHHh
Confidence 99999999999988864
No 79
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.14 E-value=4.5e-09 Score=97.84 Aligned_cols=256 Identities=16% Similarity=0.122 Sum_probs=178.0
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc
Q 041936 96 QYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY 175 (402)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 175 (402)
.++-.+...|..|+..+|..+|.-|+..|+++.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45556666788899899999999999999999998 9999888777888899999999988888876655
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHH----hCCCCCCHhhHHHH--------------HHHHhccCCHHH
Q 041936 176 GIKPDLDTYNRVIKAFCESSDSSS---AYSILAEMD----RKSIKPNASSFGAL--------------VAGFYKEEKYED 234 (402)
Q Consensus 176 ~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~~~----~~g~~~~~~~~~~l--------------~~~~~~~~~~~~ 234 (402)
.|...||..|..+|...||+.. +.+.+..+. ..|+......+-.. +....-.|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6788899999999999999765 222222221 22322111111111 112222333444
Q ss_pred HHHHHHHHHHCC-CCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041936 235 VNKVLQMMERYG-MKSGVSMYNVRIHSLCKLR-KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIM 312 (402)
Q Consensus 235 a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 312 (402)
+++++..+.... ..|..+ +++-+.... .+++-..+.+...+ .|+..+|..++.+-...|+.+.|..++.+|
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 444443332211 011111 233222222 23333333333332 589999999999999999999999999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 041936 313 SNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSE 374 (402)
Q Consensus 313 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (402)
.+.|+..+..-|..++.+ .++..-+..+++-|.+.|+.|+.+|+...+..+.+.|....
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 999999998888888765 78888899999999999999999999998888888666433
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.7e-07 Score=78.36 Aligned_cols=296 Identities=8% Similarity=0.027 Sum_probs=210.3
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 041936 54 NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTF 133 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 133 (402)
+...|.+.+-.+......+-+......+...+...|+.++|...|++... -++-+..........+.+.|+++....+.
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-ANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-CChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 33344444444444445666788899999999999999999999999873 22323222222233457889999888888
Q ss_pred HHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041936 134 KEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIK 213 (402)
Q Consensus 134 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 213 (402)
..+.... ..+...|-.-+..+....+++.|+.+-++.++.. +.+...|-.-...+...+++++|.-.|+..+... +
T Consensus 290 ~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p 365 (564)
T KOG1174|consen 290 DYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-P 365 (564)
T ss_pred HHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-h
Confidence 8776543 3455556555666677888999999888876432 2334445444567778899999999999887753 4
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-ccCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 041936 214 PNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI-HSLC-KLRKCAEAKALLDEMLSKGMKPN-SVTYS 290 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~p~-~~~~~ 290 (402)
-+...|.-|+..|...|++.+|..+-++..+. ++.+..+...+. ..+. ....-++|..++++.... .|+ ....+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~ 442 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVN 442 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHH
Confidence 57889999999999999999998877765543 133444444432 2222 222347888888887765 566 34677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMK 360 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (402)
.+...|...|..+.++.++++... ..||....+.|...+...+.+++|.+.|..+...+ +.+..+..
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl~ 509 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTLR 509 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHHH
Confidence 788889999999999999999887 46899999999999999999999999999988765 33444433
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.1e-07 Score=78.09 Aligned_cols=335 Identities=12% Similarity=0.080 Sum_probs=217.7
Q ss_pred CCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHH
Q 041936 36 LTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAH 115 (402)
Q Consensus 36 ~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (402)
..+.+.+..++..+.+-.++..|.+++.......+ .+....+.+..+|-...++..|.+.++++.. ..|.-...-.-
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-l~P~~~qYrlY 83 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQ-LHPELEQYRLY 83 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hChHHHHHHHH
Confidence 34567778888888888888889888877765432 2667788888888888899999999998872 23322222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALL--LALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE 193 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 193 (402)
-...+.+.+.+.+|+++...|.+. ++...-..-+ ......+++..+..++++...+ -+..+.+...-...+
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----Cccchhccchheeec
Confidence 345677888999999998888652 2222211122 2334567888888888877422 244444555555567
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh----------------------
Q 041936 194 SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGV---------------------- 251 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------------- 251 (402)
.|+++.|.+-|+...+-|--.....|+..+. ..+.|+++.|++...++.++|+....
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 8999999999998877653435567776664 45678899999999999998865311
Q ss_pred ------hhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 041936 252 ------SMYNVRIHSLCKLRKCAEAKALLDEMLSK-GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY 324 (402)
Q Consensus 252 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 324 (402)
..+|.-...+.+.|+++.|.+.+.+|.-+ ....|++|...+.-.- ..+++.....-+.-+.+.+. ....||
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHH
Confidence 12333334456778888888888888643 2345777766554322 23455555555555555533 345788
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-cCCChHHHHHHHHHHHh
Q 041936 325 FTMVYFMCKGGDYETALGFCKESIAKGW-VPNFTTMKSLVTGLA-GASKVSEAKELIGLVKE 384 (402)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 384 (402)
..++-.||+..-++.|..++.+--.... -.+...|+. +.+++ -.-..++|.+-++.+..
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888889999888888888765433211 234444543 34443 34567888777766543
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=7.9e-09 Score=88.53 Aligned_cols=250 Identities=11% Similarity=0.045 Sum_probs=131.0
Q ss_pred HHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 041936 85 LSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
..-.|++..++.-.+ ...............+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344566666654444 222222223334445566677777666443 3333322 55555554444444333444555
Q ss_pred HHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 165 KRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
..-+++.........+..........+...|++++|+++++.. .+.+.....+.+|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555444322111122222223334455567777777766532 2455666667777777777777777777766
Q ss_pred CCCCCChhhHHHHHHH----HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041936 245 YGMKSGVSMYNVRIHS----LCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN 320 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 320 (402)
.+ .|. +...+..+ +.-.+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+.. +
T Consensus 160 ~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 ID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp CS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred cC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 43 332 22223332 22234577777777776554 4456677777777777777777777777776654322 4
Q ss_pred HHhHHHHHHHHHccCCh-HHHHHHHHHHHhC
Q 041936 321 SSVYFTMVYFMCKGGDY-ETALGFCKESIAK 350 (402)
Q Consensus 321 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 350 (402)
..+...++.+....|+. +.+.+++.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55555666666666666 5566666666653
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=9.2e-07 Score=79.58 Aligned_cols=271 Identities=13% Similarity=0.072 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKL-RHSVG-AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
...+..+...+...|+.+.+.+.+....+... ..+.. ........+...|++++|..++++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-
Confidence 34455666677778888888777777654331 22321 22233445678899999999999986652 444444443
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 041936 188 IKAFCE----SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK 263 (402)
Q Consensus 188 i~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (402)
...+.. .+..+.+.+.++.. ....+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 223333 34455555555441 11122233445566778899999999999999999876 5567778888999999
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHhH-H--HHHHHHHccCC
Q 041936 264 LRKCAEAKALLDEMLSKGM-KPNS--VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL-SPNSSVY-F--TMVYFMCKGGD 336 (402)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~-~--~l~~~~~~~g~ 336 (402)
.|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999887532 2232 3456788889999999999999999865422 1112111 1 33333444554
Q ss_pred hHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 337 YETALGF--CKESIAKGW--VPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 337 ~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.+.+.++ +........ ............++...|+.+.|..+++.+...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4444443 211111110 111222235677788999999999999998764
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.6e-07 Score=77.18 Aligned_cols=293 Identities=13% Similarity=0.108 Sum_probs=210.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHH-HHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNAL-LLAL 155 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~ 155 (402)
.+..++..+.+..+++.|++++..-.++ .+.+..-...+..+|....++..|-..++++... .|...-|... ...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er-~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER-SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3677888888999999999999887643 4556677778888999999999999999998765 4655555433 4667
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC--ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE 233 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 233 (402)
.+.+.+..|.++...|.. .|+...-..-+.+.. ..+++..+..++++....| +..+.+...-...+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 788899999999988842 233332222233332 4688888988888876544 4555666666678999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-------------C---------------
Q 041936 234 DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-------------N--------------- 285 (402)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-------------~--------------- 285 (402)
.|.+-|+...+-+--.....|+..+.-| +.|+.+.|++...+++++|++- |
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999887754344456677766544 6689999999999998887542 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041936 286 SVTYSHFIYGFCKDGNFEEAKKFYRIMSNS-GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVT 364 (402)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (402)
...+|.-...+.+.++++.|.+.+..|... ....|+.|...+.-.= ..+++....+-+.-+.... +-..+||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence 123677777788999999999999988755 3445777776554322 2345555555566666654 456788888888
Q ss_pred HHHcCCChHHHHHHHHHH
Q 041936 365 GLAGASKVSEAKELIGLV 382 (402)
Q Consensus 365 ~~~~~g~~~~a~~~~~~~ 382 (402)
.|++..-++.|..++-+-
T Consensus 319 lyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHhhhHHHhHHHHHHhhC
Confidence 999999999988887653
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.06 E-value=3e-06 Score=78.50 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=102.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMC 332 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~ 332 (402)
|......+.+.+..++|...+.+....- .-....|......+...|.+++|.+.|...... .|+ .....++..++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 4445566677777777777777766542 234556777777788889999999999988874 444 567788999999
Q ss_pred ccCChHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 333 KGGDYETALG--FCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 333 ~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+.|+...|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|+...+.
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9998888887 999999988 779999999999999999999999999988775
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1e-06 Score=78.19 Aligned_cols=332 Identities=14% Similarity=0.077 Sum_probs=207.0
Q ss_pred HhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 041936 49 LKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEH 128 (402)
Q Consensus 49 l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 128 (402)
.-+.|+++.|...|..+..-.+ ++...|+.-..+++..|++++|.+=-.+-. .-.|....-|.....++.-.|++++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~-~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTR-RLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHH-hcCCchhhHHHHhHHHHHhcccHHH
Confidence 4467899999999987754322 377899999999999999999977665554 2345556778888889999999999
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHH-------------------------HHHHHHHchhh---------
Q 041936 129 AVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKE-------------------------VKRVFIEFPKT--------- 174 (402)
Q Consensus 129 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------------------------a~~~~~~~~~~--------- 174 (402)
|+.-|.+-++.. +.+...++.+..++.......+ -..+++.+.+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999999988775 6677788888887722200000 00000000000
Q ss_pred ----------------------------cCCCC------------C----------HHHHHHHHHHHHhcCChhHHHHHH
Q 041936 175 ----------------------------YGIKP------------D----------LDTYNRVIKAFCESSDSSSAYSIL 204 (402)
Q Consensus 175 ----------------------------~~~~p------------~----------~~~~~~li~~~~~~~~~~~a~~~~ 204 (402)
.+..| | ..-..-+.++..+..+++.|.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 00011 0 011233444555556666666666
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH-------HHHHHccCCHHHHHHHHHHH
Q 041936 205 AEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVR-------IHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 205 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~ 277 (402)
....+.. -+..-++....+|...|.+..+...-....+.|. -...-|+.+ ..+|.+.++++.++..|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 6666543 3444555566666777776666665555554441 122223332 23455556777777777776
Q ss_pred HHCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041936 278 LSKGMKPNSVTY-------------------------SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 278 ~~~~~~p~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 332 (402)
......|+..+= ..-...+.+.|++..|+..|.+++... +-|...|....-+|.
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYL 403 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHH
Confidence 655444433221 111345567788888888888888765 235777888888888
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 333 KGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
+.|.+..|+.-.+..++.. ++....|..=..++....++++|.+.|++..+..|.+
T Consensus 404 kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 8888888888777777764 4444555555555556667788888888777764444
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.01 E-value=6e-06 Score=75.10 Aligned_cols=339 Identities=16% Similarity=0.144 Sum_probs=232.2
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII 118 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 118 (402)
...+..+++.+. .+.+..-+.+.+......+.++++. ....-.+...|+-++|........ +++..+..-|..+.-
T Consensus 8 ~~lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgesl--AmkGL~L~~lg~~~ea~~~vr~gl-r~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 8 NALFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESL--AMKGLTLNCLGKKEEAYELVRLGL-RNDLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhH--HhccchhhcccchHHHHHHHHHHh-ccCcccchhHHHHHH
Confidence 345566666655 4566777777777766666666543 444445677899999999998887 567777778888888
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 198 (402)
.+....++++|++.|......+ +.|...|.-+.-.-.+.|+++..........+. .+-....|..++.++.-.|+..
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998877 778888888877778888988888777776543 1334456888888999999999
Q ss_pred HHHHHHHHHHhCC-CCCCHhhHHHHH------HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 041936 199 SAYSILAEMDRKS-IKPNASSFGALV------AGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 199 ~a~~~~~~~~~~g-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (402)
.|..++++..+.. ..|+...|.... ....+.|.+++|.+.+..-...- ......-.+-...+.+.+++++|.
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999999998764 246666655433 23456788888887776554331 122223334556788899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH-HH----------------------------------HHHHHhC
Q 041936 272 ALLDEMLSKGMKPNSVTYSHFIYGFC-KDGNFEEAK-KF----------------------------------YRIMSNS 315 (402)
Q Consensus 272 ~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~-~~----------------------------------~~~m~~~ 315 (402)
.+|..+... .||..-|...+..+. +--+.-++. .+ +..+.+.
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 999999987 566655544333222 111111111 11 1112222
Q ss_pred CC----------------------------------------------CCCHH--hHHHHHHHHHccCChHHHHHHHHHH
Q 041936 316 GL----------------------------------------------SPNSS--VYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 316 ~~----------------------------------------------~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
|+ .|... ++-.++..+-+.|+++.|..+++..
T Consensus 318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 21 23332 2345566677788999999999888
Q ss_pred HhCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 348 IAKGWVPN-FTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 348 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
+++ .|+ ++.|..-.+.+...|++++|..++++..+...+|
T Consensus 398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 876 444 3556566788888999999999999988764444
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.1e-05 Score=68.29 Aligned_cols=338 Identities=9% Similarity=0.065 Sum_probs=178.7
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN 124 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 124 (402)
.+.-+.+..++..|..+++.........- ..+---+..++.+.|++++|...++.+.. ...++..+...+..++.-.|
T Consensus 28 ~Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 28 ELEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMN-KDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred hHHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhc-cCCCCcccchhHHHHHHHHH
Confidence 35566677888888888876653221111 12222344556778999999999999884 45566666777777777788
Q ss_pred CHHHHHHHHHHhHhCC--------------CC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC
Q 041936 125 MTEHAVRTFKEMDEHK--------------LR-----------HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP 179 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~--------------~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 179 (402)
.+.+|..+-....+.. -. .+..---+|.+.....-.+++|+++|...... .|
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ 182 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NP 182 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Ch
Confidence 8888887765543210 00 00011112222222233466777777777543 45
Q ss_pred CHHHHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc--cCCHHHHH--HHH----------HHHHH
Q 041936 180 DLDTYNR-VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK--EEKYEDVN--KVL----------QMMER 244 (402)
Q Consensus 180 ~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~~~~~a~--~~~----------~~~~~ 244 (402)
.-...|. +.-+|.+..-++-+.++++-..++ ++-+....|.......+ .|+..+.+ ++. +.+.+
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 5555554 344566777777788887777665 23233344443333222 12211111 010 11111
Q ss_pred CCC------------CCC-----hhhHHHHHHHHHccCCHHHHHHHHHHH------------------------------
Q 041936 245 YGM------------KSG-----VSMYNVRIHSLCKLRKCAEAKALLDEM------------------------------ 277 (402)
Q Consensus 245 ~~~------------~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~------------------------------ 277 (402)
.++ -|. ...-..++-.|.+.+++.+|..+.+++
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 000 000 011112222344444554444444332
Q ss_pred --------HHCCCC----C----------------CHHHH---------------HHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 278 --------LSKGMK----P----------------NSVTY---------------SHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 278 --------~~~~~~----p----------------~~~~~---------------~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
-+.+.. | |+.+| -.+.++++..|++.+|+++|-.+..
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence 111111 0 11111 1355667777888888888877765
Q ss_pred CCCCCCHHhH-HHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhh
Q 041936 315 SGLSPNSSVY-FTMVYFMCKGGDYETALGFCKESIAKGWVPNF-TTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDT 392 (402)
Q Consensus 315 ~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 392 (402)
..++ |..+| ..+.++|.+.++++.|++++-++.. +.+. .....+.+-|.+.+.+--|.+.|+.+.. ..|+...
T Consensus 422 ~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~-lDP~pEn 496 (557)
T KOG3785|consen 422 PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI-LDPTPEN 496 (557)
T ss_pred hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc-cCCCccc
Confidence 5554 44555 4455677888888888777655432 2222 2334445667788888777777777654 3455444
Q ss_pred H
Q 041936 393 W 393 (402)
Q Consensus 393 ~ 393 (402)
|
T Consensus 497 W 497 (557)
T KOG3785|consen 497 W 497 (557)
T ss_pred c
Confidence 4
No 89
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=9e-07 Score=86.73 Aligned_cols=232 Identities=13% Similarity=0.097 Sum_probs=133.3
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC
Q 041936 105 PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH-KLR---HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD 180 (402)
Q Consensus 105 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 180 (402)
+.|.+.-.|-..|..+.+.++.++|.+++++.+.. ++. --...|.++++.-..-|.-+...++|++..+- .-.
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cch
Confidence 34455555666666666667777777776665532 111 11234555665555566666666666666332 112
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhhHHHHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-SGVSMYNVRIH 259 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~ 259 (402)
...|..|...|.+.+.+++|-++++.|.+. +.....+|...+..+.+.++-+.|..++.+..+.-.. -......-.++
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 234566666677777777777777776665 2245566666666667766666777776666553211 12333444445
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHccCCh
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS--SVYFTMVYFMCKGGDY 337 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~ 337 (402)
.-.+.|+.+.+..+|+.......+ -...|+..++.-.++|+.+.+..+|++.+..++.|-. ..|...+..=-..|+-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 555667777777777766655222 3456677777777777777777777777766655542 3444444444444554
Q ss_pred HHHH
Q 041936 338 ETAL 341 (402)
Q Consensus 338 ~~a~ 341 (402)
..++
T Consensus 1688 ~~vE 1691 (1710)
T KOG1070|consen 1688 KNVE 1691 (1710)
T ss_pred hhHH
Confidence 4333
No 90
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.94 E-value=1.9e-05 Score=71.92 Aligned_cols=157 Identities=7% Similarity=-0.023 Sum_probs=85.6
Q ss_pred HHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCH
Q 041936 47 TLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMT 126 (402)
Q Consensus 47 ~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 126 (402)
..+..+++..+....|+.+...-++.--...|...+......+-.+.+..+++..++. .+......+..+...++.
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccch
Confidence 3444566666666666666544444444456777777777777777888888777632 222244556666778888
Q ss_pred HHHHHHHHHhHhCC------CCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHchhhcCCCCCH--HHHHHHHHHHHhcC
Q 041936 127 EHAVRTFKEMDEHK------LRHSVGAFNALLLALTIAKDYK---EVKRVFIEFPKTYGIKPDL--DTYNRVIKAFCESS 195 (402)
Q Consensus 127 ~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~ 195 (402)
++|.+.+....... -+.+...|+.+-+...+.-+.- ....++..++. .-+|. ..|++|..-|.+.|
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHHHHHHHHHHHHhh
Confidence 88877776654211 1333344444444333332221 12222332221 12332 24666666666666
Q ss_pred ChhHHHHHHHHHHhC
Q 041936 196 DSSSAYSILAEMDRK 210 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~ 210 (402)
.+++|.++|++.+..
T Consensus 263 ~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT 277 (835)
T ss_pred hhHHHHHHHHHHHHh
Confidence 666666666665543
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2.6e-06 Score=71.87 Aligned_cols=155 Identities=13% Similarity=0.116 Sum_probs=95.2
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 82 INKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
+.-+....++..|+.+++--...+......+-.-+..++.+.|++++|+..+..+.+.. .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34455677888888888776633333223344445667889999999999999988755 66667776777777778888
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh------------------------------cCChhHHHHHHHHHHhCC
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE------------------------------SSDSSSAYSILAEMDRKS 211 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~------------------------------~~~~~~a~~~~~~~~~~g 211 (402)
.+|..+-....+ +...-..|+....+ .-.+.+|+++|.+....
T Consensus 108 ~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 108 IEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 888887766532 11222222222222 23356667777666654
Q ss_pred CCCCHhhHHHHH-HHHhccCCHHHHHHHHHHHHHC
Q 041936 212 IKPNASSFGALV-AGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 212 ~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
.|+-...|.-+ -+|.+..-++-+.++++-..+.
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 23333333332 3455666667777777655543
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.3e-06 Score=81.46 Aligned_cols=300 Identities=13% Similarity=0.103 Sum_probs=182.8
Q ss_pred hcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcC-C-------CCCchHHHHHHHHHHH
Q 041936 50 KSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTR-P-------DLQNERFHAHSIILYG 121 (402)
Q Consensus 50 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~~~~~~~~~~li~~~~ 121 (402)
-..|+.+.|+.-++.+.. ...|..+.+.|.+..+++-|.-.+..|... + ...+.+.-........
T Consensus 739 vtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 355778888777665543 358999999999999999998888777611 1 1111122223344467
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
..|.+++|+.+|.+.++ |..|=..|-..|.+++|.++-+.- .+ -.=-.||.....-+-..+|.+.|+
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~-DR---iHLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETK-DR---IHLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhc-cc---eehhhhHHHHHHHHHhhccHHHHH
Confidence 88999999999999875 444556778889999999887543 21 112246666667677778888888
Q ss_pred HHHHHHH----------hCC---------CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 041936 202 SILAEMD----------RKS---------IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLC 262 (402)
Q Consensus 202 ~~~~~~~----------~~g---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (402)
+.|++.. ... -..|...|......+-..|+.+.|+.+|....+ |-++++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 8776532 111 123445566667777788999999999887754 334444444
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------CCCC-----------C-C
Q 041936 263 KLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSN----------SGLS-----------P-N 320 (402)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----------~~~~-----------~-~ 320 (402)
-.|+.++|-++-++-. |....-.+.+.|...|++.+|..+|.+... .+++ | |
T Consensus 950 ~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d 1023 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSD 1023 (1416)
T ss_pred eccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchh
Confidence 4455555544433321 333333344444444555444444443221 0100 0 0
Q ss_pred H-----------HhHHHHHHHHHccCChHHHHHHHHH--------HHhC--CCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 041936 321 S-----------SVYFTMVYFMCKGGDYETALGFCKE--------SIAK--GWVPNFTTMKSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 321 ~-----------~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (402)
. .-+...+..|.+.|.+.+|+++--+ ++.. .-..|+...+.-.+.+....++++|..++
T Consensus 1024 ~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1024 LVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred HHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0 0122334567778888777765322 2222 33457778888888888888899888887
Q ss_pred HHHHh
Q 041936 380 GLVKE 384 (402)
Q Consensus 380 ~~~~~ 384 (402)
-...+
T Consensus 1104 ~~ar~ 1108 (1416)
T KOG3617|consen 1104 CLARE 1108 (1416)
T ss_pred HHHHH
Confidence 65544
No 93
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=4.6e-06 Score=72.61 Aligned_cols=138 Identities=9% Similarity=0.025 Sum_probs=73.5
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK-DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
.+...++.++|+.+..++++.+ +-+..+|+....++...| ++++++..++++.+.. +.+..+|+-....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCch
Confidence 3445566666777666666654 444455555555555555 4566666666665432 23333444433333344432
Q ss_pred --hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 041936 198 --SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSL 261 (402)
Q Consensus 198 --~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (402)
+++..+++++.+.. +-|..+|+....++...|+++++++.++++++.+ +.+...|+.....+
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl 186 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVI 186 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHH
Confidence 45555565555543 2355556655556666666666666666666554 33444455444443
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=3.9e-07 Score=81.56 Aligned_cols=253 Identities=11% Similarity=0.076 Sum_probs=174.5
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 198 (402)
.+.+.|++.+|.-.|+...+.+ |.+...|..|.......++-..|+..+.+..+-. +-+....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 4667888888888888888776 6778888888888888888888888888876431 334566777777888888888
Q ss_pred HHHHHHHHHHhCCCC-----C---CHhhHHHHHHHHhccCCHHHHHHHHHHH-HHCCCCCChhhHHHHHHHHHccCCHHH
Q 041936 199 SAYSILAEMDRKSIK-----P---NASSFGALVAGFYKEEKYEDVNKVLQMM-ERYGMKSGVSMYNVRIHSLCKLRKCAE 269 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~ 269 (402)
.|++.++.-+....+ + +...-.. ..+..........++|-++ ...+..+|..++..|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888876554210 0 0000000 1222333344555555444 344434677777788888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 041936 270 AKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESI 348 (402)
Q Consensus 270 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (402)
|.+.|+........ |...||.|...++...+.++|+..|.+.++. +|+ ......|..+|...|.+++|.+.|-.++
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999988876332 6778899988888888899999999988884 555 3445556777888899998888876654
Q ss_pred hC---------CCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 041936 349 AK---------GWVPNFTTMKSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 349 ~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (402)
.. ...++...|..|=.++.-.++.|.+.+..
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 31 12234567777766777777776555443
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=1.7e-05 Score=80.64 Aligned_cols=308 Identities=8% Similarity=-0.028 Sum_probs=190.8
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCC------CC--chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH----HHH
Q 041936 81 AINKLSEANYFNGISQYLEELKTRPD------LQ--NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSV----GAF 148 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~------~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~ 148 (402)
....+...|+++++..++......-. .+ .......+...+...|++++|...++...+.-...+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 34445567888888888877652111 11 1122222334566789999999999887653111121 244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCC--CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CHh
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGI--KP--DLDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIK--P-NAS 217 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~ 217 (402)
+.+...+...|++++|...+++......- .+ ...++..+...+...|++++|...+++.... |.. + ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55666778889999998888877432110 11 1234455667778889999999888876542 211 1 123
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHH---
Q 041936 218 SFGALVAGFYKEEKYEDVNKVLQMMERYG--MKS--GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK-PNSVTY--- 289 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~--- 289 (402)
.+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.+......... .....+
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 34455566777899999998888765421 112 2334445566777889999999988887542111 011111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCC-CHHHH
Q 041936 290 --SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN---SSVYFTMVYFMCKGGDYETALGFCKESIAK----GWVP-NFTTM 359 (402)
Q Consensus 290 --~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~ 359 (402)
...+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++.... |... ...+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 1122444567888888888777554321111 111345667788899999999999887653 3222 23456
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 360 KSLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 360 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
..+..++.+.|+.++|...+.+..+...+
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 66778888999999999999999886433
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=8.6e-07 Score=79.40 Aligned_cols=225 Identities=15% Similarity=0.092 Sum_probs=168.2
Q ss_pred HHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 041936 153 LALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKY 232 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 232 (402)
.-+.+.|++.+|.-.|+..+++. +-+...|..|......+++-..|+..+++..+.. +-|....-.|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34678899999999999987763 5567889999999999999999999999998864 34677778888888899988
Q ss_pred HHHHHHHHHHHHCCCC--------CChhhHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHH
Q 041936 233 EDVNKVLQMMERYGMK--------SGVSMYNVRIHSLCKLRKCAEAKALLDEMLS-KGMKPNSVTYSHFIYGFCKDGNFE 303 (402)
Q Consensus 233 ~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~ 303 (402)
..|.+.++.-+....+ ++..+-.. ..+.....+....++|-++.. .+..+|......|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8999988866443210 00000000 122333445566666666654 444467778888888888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN-FTTMKSLVTGLAGASKVSEAKELIGLV 382 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (402)
+|.+.|+..+..... |..+||.|...++...+.++|...|.++++. .|. +.....|.-.|...|.+++|.+.|-.+
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999985322 5788999999999999999999999999986 443 344556777899999999999988776
Q ss_pred Hhc
Q 041936 383 KEK 385 (402)
Q Consensus 383 ~~~ 385 (402)
...
T Consensus 525 L~m 527 (579)
T KOG1125|consen 525 LSM 527 (579)
T ss_pred HHh
Confidence 553
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=2e-06 Score=79.21 Aligned_cols=211 Identities=10% Similarity=0.131 Sum_probs=122.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 195 (402)
+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+-.++ +||...|..+........
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccChH
Confidence 3445555566666666655543 3445555666666666665555544332 556666666555555555
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+++..|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 555555555443221 11111122233566666666666555543 3445566666666667777777777777
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 276 EMLSKGMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 276 ~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
..... .|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+-..|...+....+.|.+++|.+.+..+.+
T Consensus 544 rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66654 343 4567777777777777777777777777665 33455566666666677777777777766654
No 98
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=6.1e-06 Score=71.85 Aligned_cols=207 Identities=7% Similarity=-0.035 Sum_probs=135.5
Q ss_pred HHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH--
Q 041936 85 LSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN-MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY-- 161 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 161 (402)
+...++.++|+.+.++++. ..+.+...|..--.++...| ++++++..++++.+.+ +.+..+|+....++.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~-lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIR-LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 4445677788888877773 23444455555545556666 5788888888888776 56666777666666666653
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc---CCH----HH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKE---EKY----ED 234 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---~~~----~~ 234 (402)
+++..+++++.+.. +-+..+|+-..-.+...|+++++++.++++++.+.. |...|+....++.+. |.. ++
T Consensus 125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 56777887776543 446677887777888888899999999998887633 666777666555443 222 35
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041936 235 VNKVLQMMERYGMKSGVSMYNVRIHSLCKL----RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK 298 (402)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 298 (402)
..+....++... +-+...|+.+...+... +...+|.+.+.+....++. +......|+..|+.
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 556665666554 56677777777777662 3345577777776654322 55566667776664
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=6.3e-07 Score=82.36 Aligned_cols=221 Identities=11% Similarity=0.031 Sum_probs=181.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGA 221 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (402)
+|-...-..+...+...|-...|..+|+++ ..|.-++.+|+..|+..+|..+..+..++ +||+..|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 344444456778899999999999999887 24888999999999999999999988874 789999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
+++.....--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|-....+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 999888777788998888765432 11222223345799999999999887763 2256788888888899999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 041936 302 FEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIG 380 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 380 (402)
++.|.+.|...... .|| ...|+.+-.+|.+.++-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.+.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999999874 454 6889999999999999999999999999987 6667778888888899999999999999
Q ss_pred HHHhc
Q 041936 381 LVKEK 385 (402)
Q Consensus 381 ~~~~~ 385 (402)
++.+.
T Consensus 612 rll~~ 616 (777)
T KOG1128|consen 612 RLLDL 616 (777)
T ss_pred HHHHh
Confidence 88763
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=7e-06 Score=80.80 Aligned_cols=239 Identities=12% Similarity=0.079 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD---LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASS 218 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 218 (402)
|-+...|-..|......++.++|.++.++....-++.-. ...|.++++.-...|.-+...++|+++.+.. -...+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 455677899999999999999999999998764333222 2357777777777788889999999998852 23457
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFC 297 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 297 (402)
|..|...|.+.+++++|.++|+.|.+.- ......|...+..+.+.++-+.|.+++.+..+.-.+- ........++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999998864 3677889999999999999999999999988762221 2234455566667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChHHH
Q 041936 298 KDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNF--TTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a 375 (402)
+.|+.+++..+|+.....-.+ ....|+.+++.-.++|+.+.+..+|++.+..++.|-. ..|...+..--+.|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 899999999999999876332 4678999999999999999999999999999876643 5677777777777886666
Q ss_pred HHHHHHHHh
Q 041936 376 KELIGLVKE 384 (402)
Q Consensus 376 ~~~~~~~~~ 384 (402)
+.+=.++.+
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 555444443
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.81 E-value=3.2e-06 Score=81.02 Aligned_cols=181 Identities=7% Similarity=-0.064 Sum_probs=118.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 041936 71 SHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNA 150 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 150 (402)
+..+...+-.+.....+.|.+++|..+++... .-.|........++..+.+.+++++|+..+++..+.. +.+....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~-~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH-QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 33456777777778888888888888887777 3345556666677777888888888888888877765 556667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 151 LLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
+..++.+.|++++|..+|+++... .+-+..++..+...+-..|+.++|...|++..+.- .+...-|+..+ +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------H
Confidence 777778888888888888887642 23346677777777778888888888888776652 23344444443 2
Q ss_pred CHHHHHHHHHHHHHCC----CCCChhhHHHHHHHHH
Q 041936 231 KYEDVNKVLQMMERYG----MKSGVSMYNVRIHSLC 262 (402)
Q Consensus 231 ~~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~ 262 (402)
+...-...++++.-.+ .+..+.+....|.-|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 3334444555554333 2223344444554444
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=2.4e-05 Score=79.69 Aligned_cols=303 Identities=10% Similarity=0.037 Sum_probs=188.4
Q ss_pred HHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC------CCCH--HHHHHHHHH
Q 041936 83 NKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKL------RHSV--GAFNALLLA 154 (402)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~------~~~~--~~~~~l~~~ 154 (402)
..+...|+++.+..+++.+.......+..........+...|++++|..++....+.-- .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653111111222333445556788999999999987754210 1111 122233455
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHH
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKP---DLDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIK-PNASSFGALVAGF 226 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l~~~~ 226 (402)
+...|++++|...+++......... .....+.+...+...|++++|...+++.... |-. ....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 6789999999999988754211111 1134456667778899999999999887643 211 1123455667778
Q ss_pred hccCCHHHHHHHHHHHHH----CCCC--C-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 041936 227 YKEEKYEDVNKVLQMMER----YGMK--S-GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG--MKP--NSVTYSHFIYG 295 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p--~~~~~~~l~~~ 295 (402)
...|++++|...+++... .+.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 899999999999887654 2211 1 22334455566777899999999998876531 112 23345556677
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCCHH--hH--HHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 041936 296 FCKDGNFEEAKKFYRIMSNSG--LSPNSS--VY--FTMVYFMCKGGDYETALGFCKESIAKGWVPN---FTTMKSLVTGL 366 (402)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 366 (402)
+...|++++|...+....... ...... .. ...+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 888999999999998875431 111111 10 1122444568999999999877654321111 11234667788
Q ss_pred HcCCChHHHHHHHHHHHhc
Q 041936 367 AGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 367 ~~~g~~~~a~~~~~~~~~~ 385 (402)
...|+.++|...+++....
T Consensus 702 ~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 702 ILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988764
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=2.6e-06 Score=69.08 Aligned_cols=120 Identities=10% Similarity=0.060 Sum_probs=64.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 041936 229 EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG-FCKDGN--FEEA 305 (402)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~--~~~a 305 (402)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555555555444 455555666666666666666666666665554322 44444545444 234444 3566
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 306 KKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 306 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
.+++++..+.+.. +...+..+...+...|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666554322 34455555555556666666666666655543
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2e-05 Score=75.33 Aligned_cols=202 Identities=15% Similarity=0.176 Sum_probs=96.8
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHH
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTPESH-LDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAH 115 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (402)
.+....+-..+++-..+-|.+..++++.....+..- -+...-+.++-...+. +..++.++.+++..- +.+ .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdny-Da~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNY-DAP------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccC-Cch------h
Confidence 344556667778888888888888888876555332 2333334444333333 445566666665421 111 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 195 (402)
+...+...+-+++|..+|++.. .+....+.|+.- -+.++.|.+.-++.. .+..|..+..+-.+.|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcC
Confidence 2333455666677777766542 223333333321 233344444433331 2233455555555555
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAE 269 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 269 (402)
.+.+|.+-|-+. -|+..|..+++...+.|.|++-.+.+....+..-+|.+ =+.+|-+|++.++..+
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTE 1184 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHH
Confidence 554444433222 13344445555555555555555544444443333322 2234444444444443
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=1.7e-06 Score=72.90 Aligned_cols=186 Identities=14% Similarity=0.118 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh---
Q 041936 179 PDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN---ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVS--- 252 (402)
Q Consensus 179 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 252 (402)
.....+..+...+...|++++|...|+++.... +.+ ..++..+..++...|++++|...++.+.+... .+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHH
Confidence 355667778888888999999999999887753 212 24667778888889999999999998887541 1221
Q ss_pred hHHHHHHHHHcc--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh
Q 041936 253 MYNVRIHSLCKL--------RKCAEAKALLDEMLSKGMKPNS-VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSV 323 (402)
Q Consensus 253 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 323 (402)
++..+..++... |+.++|.+.|+.+... .|+. ..+..+..... .... . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------L--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------H--------HHH
Confidence 344444555543 6778888888888776 3332 22222211100 0000 0 001
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 041936 324 YFTMVYFMCKGGDYETALGFCKESIAKG--WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKF 386 (402)
Q Consensus 324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (402)
...+...+.+.|++++|...++++.+.. -+.....+..+..++.+.|++++|...++.+...+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1245567888999999999999988762 12345788889999999999999999998887754
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=5.4e-05 Score=68.40 Aligned_cols=329 Identities=14% Similarity=0.118 Sum_probs=190.5
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 121 (402)
+.--+.++...+.++.|+.+.+.-... ..+...+..-..+.-+.+..++|+..++... ..+..+...-...+.
T Consensus 49 ~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlY 121 (652)
T KOG2376|consen 49 IRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLY 121 (652)
T ss_pred HhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHH
Confidence 333445566677788888665543321 1111111233445567788888888887322 233445555566778
Q ss_pred hcCCHHHHHHHHHHhHhCCCCC---------------------------CHHHHHHHH---HHHHHcCCHHHHHHHHHHc
Q 041936 122 QANMTEHAVRTFKEMDEHKLRH---------------------------SVGAFNALL---LALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~---------------------------~~~~~~~l~---~~~~~~~~~~~a~~~~~~~ 171 (402)
+.|++++|+++|+.+.+.+.+. ...+|..+. -.+...|++.+|+++++..
T Consensus 122 rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 122 RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8888999988888886544220 011333322 2456678999999998877
Q ss_pred hhh--------c----CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH----HHHHHH---------
Q 041936 172 PKT--------Y----GIKPDLD-TYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSF----GALVAG--------- 225 (402)
Q Consensus 172 ~~~--------~----~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~--------- 225 (402)
.+. . ++.-+.. .-.-|...+...|+..+|..+|...++.. .+|.... |.++..
T Consensus 202 ~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~ 280 (652)
T KOG2376|consen 202 LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDG 280 (652)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCch
Confidence 211 0 0111111 12234556677899999999888887764 2333211 111110
Q ss_pred --------------------------------------Hhc--------------------------------cCCHHHH
Q 041936 226 --------------------------------------FYK--------------------------------EEKYEDV 235 (402)
Q Consensus 226 --------------------------------------~~~--------------------------------~~~~~~a 235 (402)
|.. ...+.++
T Consensus 281 ~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka 360 (652)
T KOG2376|consen 281 DLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKA 360 (652)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhh
Confidence 000 0001122
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041936 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD--------EMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
.+++...-+....-...+.-..++.....|+++.|.+++. .+.+.+..|..+ ..+...+.+.++-+.|..
T Consensus 361 ~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~ 438 (652)
T KOG2376|consen 361 IELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASA 438 (652)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHH
Confidence 2222222221111113344556677788899999999999 555555555544 556666777777777777
Q ss_pred HHHHHHhC--CCCCCH----HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 041936 308 FYRIMSNS--GLSPNS----SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGL 381 (402)
Q Consensus 308 ~~~~m~~~--~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (402)
++.+.+.- .-.+.. .++.-+...-.+.|.-++|...++++.+.. ++|..+...++.+|++. +++.|..+-..
T Consensus 439 vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 439 VLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 77766532 111122 233333334456799999999999999965 78999999999999886 67777776554
Q ss_pred H
Q 041936 382 V 382 (402)
Q Consensus 382 ~ 382 (402)
+
T Consensus 517 L 517 (652)
T KOG2376|consen 517 L 517 (652)
T ss_pred C
Confidence 4
No 107
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.2e-05 Score=65.45 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=67.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK---- 263 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 263 (402)
...|++.+++++|++..+... +......=+..+.+..+.+-|.+.++.|.+. .+..+.+-|.+++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 344555566666655555411 2222222333444555556666666666542 233344434333332
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 041936 264 LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG 335 (402)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 335 (402)
.+.+.+|.-+|++|-+. ..|+..+.+-...++...|++++|..++++...+..+ ++.+...++.+-...|
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 23455566666665543 3455555555555556666666666666666555332 3344433433333333
No 108
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.79 E-value=3.4e-05 Score=65.09 Aligned_cols=283 Identities=10% Similarity=-0.003 Sum_probs=202.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHH-H
Q 041936 108 QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYN-R 186 (402)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~ 186 (402)
.+..-..-+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.-+...++. +||-..-. .
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQ 111 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHH
Confidence 344445556677888999999999999988654 333344444556788899999998888888643 78754322 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhhH------------HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh
Q 041936 187 VIKAFCESSDSSSAYSILAEMDRKSIKP--NASSF------------GALVAGFYKEEKYEDVNKVLQMMERYGMKSGVS 252 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 252 (402)
-...+.+.|.++.|..=|+..++..... ....+ ...+..+...|+...|+.....+.+.. +.|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 2345678999999999999998863211 11111 223445667899999999999999876 67889
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh----HHHH-
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSV----YFTM- 327 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l- 327 (402)
.|..-..+|...|++..|+.-++...+..-. +..++-.+-..+...|+.+.++...++..+. .||... |..+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 9999999999999999999888777665333 5666667788888999999999999988874 455422 2221
Q ss_pred --------HHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 328 --------VYFMCKGGDYETALGFCKESIAKGWVP---NFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 328 --------~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
+......+++.++.+-.+..++..... ....+..+-.++...|++.+|++...++.+..+.|+.++---
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 223345677888888887777764221 233455667778889999999999999999777777766443
Q ss_pred Hh
Q 041936 397 EA 398 (402)
Q Consensus 397 ~~ 398 (402)
..
T Consensus 348 Ae 349 (504)
T KOG0624|consen 348 AE 349 (504)
T ss_pred HH
Confidence 33
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.75 E-value=6.8e-05 Score=69.86 Aligned_cols=322 Identities=15% Similarity=0.076 Sum_probs=170.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC-CHHHHH
Q 041936 71 SHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRH-SVGAFN 149 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 149 (402)
..-|...|..+.-++...|+++.+.+.|++... ......+.|..+...|...|.-..|+.+++.-......| +...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 335788899999999999999999999998873 334445667777888888888888888888755432123 333332
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHchhhcCCC---CCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhCC-CC
Q 041936 150 ALLLALT-IAKDYKEVKRVFIEFPKTYGIK---PDLDTYNRVIKAFCES-----------SDSSSAYSILAEMDRKS-IK 213 (402)
Q Consensus 150 ~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~---p~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~g-~~ 213 (402)
..-..|. +.+..++++.+-.+.+...+-+ .....|..+.-+|... ....++++.+++..+.+ ..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2222232 2344444444443332211100 0111222222222211 11233444444444332 12
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CC----------
Q 041936 214 PNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK-GM---------- 282 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~---------- 282 (402)
|+...|.. --|+..++.+.|.+...+..+-+-..+...|..+.-.+...+++.+|+.+.+...+. |.
T Consensus 478 p~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 22222221 123334445555555555544433344444444444444444444444444433221 00
Q ss_pred --------------------------------------------------------------------------------
Q 041936 283 -------------------------------------------------------------------------------- 282 (402)
Q Consensus 283 -------------------------------------------------------------------------------- 282 (402)
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence
Q ss_pred ---C--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 283 ---K--PN------SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 283 ---~--p~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
. |+ ...|......+.+.+..++|...+.+..... ......|......+...|...+|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0 00 0012233344445555555555555554431 1233444555555666777777777777777654
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHH--HHHHHHhcCCCChhhHHHHH
Q 041936 352 WVPNFTTMKSLVTGLAGASKVSEAKE--LIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~ 397 (402)
+.++....++..++.+.|+..-|.. ++.++.+..|.|...|..+-
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4456677778888888887777777 88888887777777776553
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.74 E-value=1.5e-08 Score=55.73 Aligned_cols=32 Identities=34% Similarity=0.806 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 176 GIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 176 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=2e-05 Score=69.64 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=53.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG-VSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~ 271 (402)
..|++++|+..++.+... .+-|..........+.+.++.++|.+.++++.... |+ ....-.+.++|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHH
Confidence 344555555555554443 12233333444445555555555555555555432 22 333344445555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041936 272 ALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 272 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
.++++...... -|...|..|.++|...|+..++..
T Consensus 395 ~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 395 RILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHH
Confidence 55555544421 244555555555555555554443
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.74 E-value=1.7e-08 Score=55.47 Aligned_cols=30 Identities=37% Similarity=0.782 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 282 MKPNSVTYSHFIYGFCKDGNFEEAKKFYRI 311 (402)
Q Consensus 282 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (402)
+.||..||+.+|.+|++.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444444444444444444444433
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=8.7e-06 Score=79.05 Aligned_cols=238 Identities=9% Similarity=0.045 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..++..+...+++++|.++.+.... ..+....+|..+...+.+.++.+++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~-~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK-EHKKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 445566666666666666666666665442 2222233333333345555554443333 1222
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE 233 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 233 (402)
......++..+..+...+.+ . .-+...+..+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|... +++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~-~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL-Y--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hcccccchhHHHHHHHHHHh-h--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22223333222333333321 1 2233456667777777777777777777777665 44666777777777666 777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041936 234 DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 313 (402)
+|++++.+.... +...+++..+.++|.++....+. |...+- .+.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHH
Confidence 777766665542 45556677777777777665221 222222 2222222
Q ss_pred hC-CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 314 NS-GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 314 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
.. |..--..++..+-..|...++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 22 222234456666777888899999999999999876 446677777777775
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=5.7e-06 Score=67.05 Aligned_cols=119 Identities=8% Similarity=0.166 Sum_probs=71.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-HccCC--HHHH
Q 041936 194 SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSL-CKLRK--CAEA 270 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a 270 (402)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445556666666555543 4456666666666666666666666666666654 34555555555543 45455 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 271 KALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666665333 4555666666666666666666666666654
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=2.4e-06 Score=71.98 Aligned_cols=186 Identities=10% Similarity=-0.006 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCC-CC-CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH---HH
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKTRP-DL-QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSV---GA 147 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~ 147 (402)
.....+......+...|++++|...++.+.... .. .....+..+..++...|++++|...++.+.+.. +.+. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 344566666667777777777777777766321 11 112345556667777777777777777776543 1111 13
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 041936 148 FNALLLALTIA--------KDYKEVKRVFIEFPKTYGIKPDL-DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASS 218 (402)
Q Consensus 148 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 218 (402)
+..+..++... |+.++|.+.|+.+.+. .|+. ..+..+..... ... .. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 44444445443 5667777777776544 2332 22211111100 000 00 001
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYGM--KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
...+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455667888888888888888876531 223467788888888889998888888887765
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=7.7e-06 Score=66.43 Aligned_cols=159 Identities=14% Similarity=0.171 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 041936 185 NRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKL 264 (402)
Q Consensus 185 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (402)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55555666667666666666654433 23355555567777777777777777777776655 67777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 041936 265 RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFC 344 (402)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 344 (402)
|+++.|..-|.+..+.... +...++.+...+.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777777765222 4556667777777777777777777777765432 4555566666667777777777765
Q ss_pred HHH
Q 041936 345 KES 347 (402)
Q Consensus 345 ~~~ 347 (402)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 433
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=6e-05 Score=61.46 Aligned_cols=251 Identities=15% Similarity=0.158 Sum_probs=165.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
++.+.=.|.+..++..-...... +.+...-.-+-++|...|+...... ++ +. |-.|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI-~~-~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EI-KE-GKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cc-cc-ccCChHHHHHHHHHHhhCcch
Confidence 34455567777776665554432 1233333345566777776654433 33 21 223444444444444444444
Q ss_pred hhHH-HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 197 SSSA-YSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 197 ~~~a-~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
.+.- .++.+.+.......+......-...|++.|++++|++..+... +......=+..+.+..+++-|...++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 3344555555444444555555678899999999999887732 23334444556678889999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 276 EMLSKGMKPNSVTYSHFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 276 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
+|.+.. +..|.+-|..++.+ .+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..++++...+.
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 998752 56778878777765 45688999999999885 56889999999999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHcCCChHH-HHHHHHHHHhc
Q 041936 352 WVPNFTTMKSLVTGLAGASKVSE-AKELIGLVKEK 385 (402)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 385 (402)
.-++.+...++..-...|...+ ..+.+.+....
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 5567777777766666665544 44566666554
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=8.4e-06 Score=66.21 Aligned_cols=158 Identities=11% Similarity=0.008 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA 158 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (402)
...-..+...|+-+....+..... ...+.+.......+....+.|++..|...|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~-~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA-IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh-ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444445555566666666665544 2334445555556666777777777777777766554 66777777777777777
Q ss_pred CCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041936 159 KDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKV 238 (402)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (402)
|+++.|..-|.+..+-. .-+....+.+...+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777766664432 2233446666666666777777777776666553 23555566666666667777777666
Q ss_pred HHH
Q 041936 239 LQM 241 (402)
Q Consensus 239 ~~~ 241 (402)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 543
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=2.9e-06 Score=65.08 Aligned_cols=100 Identities=10% Similarity=-0.003 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASK 371 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (402)
....+...|++++|...|+....... .+...|..+..++...|++++|...|+...... +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 34444444455555544444444321 133444444444444555555555555444433 3344444444444444555
Q ss_pred hHHHHHHHHHHHhcCCCChhhH
Q 041936 372 VSEAKELIGLVKEKFTKNVDTW 393 (402)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~ 393 (402)
.++|...|+...+..|.+...|
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHH
Confidence 5555555555444433333333
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.64 E-value=2.6e-05 Score=75.93 Aligned_cols=239 Identities=12% Similarity=0.113 Sum_probs=148.6
Q ss_pred CccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHH
Q 041936 38 SKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSI 117 (402)
Q Consensus 38 ~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 117 (402)
-...+..++..+...++++.|.++++......+..+....+..+ .+.+.++++.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh-----------------hhh
Confidence 33445677888889999999999999777666555554444444 56667776665544 233
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
.......++.-+..+...|.+. .-+...+..+..+|-+.|+.+++..+|+++.+-. +-|+.+.|.+...|... +.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hH
Confidence 3333444444444444455543 3444577788888889999999999999887653 55677888888888888 88
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (402)
++|.+++.+.... +...+++..+.++|.++.... +.+...+..+.+.....-
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~------------ 217 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHR------------ 217 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhh------------
Confidence 8888888877654 555667777777777777654 222222222222211110
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041936 278 LSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 278 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 332 (402)
|..--..++-.+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 218 ---~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ---EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ---ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11112334444555666666777777777777665332 4444555555554
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.60 E-value=0.0004 Score=62.40 Aligned_cols=154 Identities=7% Similarity=0.088 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041936 232 YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFCKDGNFEEAKKFYR 310 (402)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 310 (402)
.+.....++++.......-..+|..+++...+..-+..|..+|.+..+.+..+ ++..+++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444555555443322234457778888888888999999999999887776 6667777777665 567888999998
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 311 IMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN--FTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 311 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
.-.+. ..-+.......+..+...++-..+..+|++....++.++ ...|..++..-..-|+...+.++-+++...++
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 76654 222334446677778888999999999999988855544 47899999998999999999998888777655
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=4.4e-05 Score=73.41 Aligned_cols=211 Identities=12% Similarity=0.075 Sum_probs=156.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhh--cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 79 SIAINKLSEANYFNGISQYLEELK--TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
..+=..+.+.+.+..+..-+-++. .+..+.+...+..|.....+.|.+++|..+++...+.. +.+......+...+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~ 131 (694)
T PRK15179 53 QQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVK 131 (694)
T ss_pred HHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHH
Confidence 333344555555555555454443 24456678889999999999999999999999999875 666778888999999
Q ss_pred HcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041936 157 IAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVN 236 (402)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 236 (402)
+.+++++|...+++..... +-+......+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|.
T Consensus 132 ~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999987542 4455677788889999999999999999999843 445889999999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcC
Q 041936 237 KVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG----MKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~ 300 (402)
..|+...+.. .+....|+.++ +++..-..+++++.-.+ ..........++.-|....
T Consensus 209 ~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 209 DVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 9999998754 45555555544 33445556666665432 2233445566666665543
No 123
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00014 Score=69.86 Aligned_cols=274 Identities=15% Similarity=0.163 Sum_probs=177.7
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQ--NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNA 150 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 150 (402)
.|++.-+..+.++...+-..+-+++++++.-.+... +...-+.++-... .-+..++.+..+++...+ .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh------
Confidence 355666777777777777777777777777333332 2333333433333 334556666666665433 232
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 151 LLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
+...+...+-+++|..+|++. ..+....+.|+. .-+..+.|.+.-++.. .+..|+.+..+-.+.|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcC
Confidence 333455666778888888765 235555555555 3455666666555442 3567888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041936 231 KYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYR 310 (402)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 310 (402)
...+|++-|-+. .|...|..+++...+.|.+++...++....+..-.|... ..++-+|++.++..+.++++
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi- 1189 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI- 1189 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-
Confidence 888888766443 456678889999999999999888888777776566554 46888888888887765544
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCh
Q 041936 311 IMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNV 390 (402)
Q Consensus 311 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 390 (402)
..||......+.+-|...|.++.|.-++.. ...|..|...++..|++..|...-++.. +.
T Consensus 1190 ------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn-----s~ 1249 (1666)
T KOG0985|consen 1190 ------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN-----ST 1249 (1666)
T ss_pred ------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc-----ch
Confidence 246777777777778888887777766643 3345566666677777777666555443 44
Q ss_pred hhHHHHHh
Q 041936 391 DTWNEIEA 398 (402)
Q Consensus 391 ~~~~~l~~ 398 (402)
.+|.-.-.
T Consensus 1250 ktWK~Vcf 1257 (1666)
T KOG0985|consen 1250 KTWKEVCF 1257 (1666)
T ss_pred hHHHHHHH
Confidence 55554433
No 124
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.00024 Score=63.62 Aligned_cols=317 Identities=15% Similarity=0.085 Sum_probs=203.1
Q ss_pred CccchHHHHHHHhcCCChhHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHH
Q 041936 38 SKDKTRAALTLLKSESNPEKILEICRAAA-LTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHS 116 (402)
Q Consensus 38 ~~~~~~~~l~~l~~~~~~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (402)
.+..+..=.-.+.+.++++.|++--.... ..|.+ +..|+....++.-.|++++|..-|.+-+ ...+.+..++..+
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w---~kgy~r~Gaa~~~lg~~~eA~~ay~~GL-~~d~~n~~L~~gl 110 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW---AKGYSRKGAALFGLGDYEEAILAYSEGL-EKDPSNKQLKTGL 110 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch---hhHHHHhHHHHHhcccHHHHHHHHHHHh-hcCCchHHHHHhH
Confidence 33344444455667788888887655443 33322 2478999999999999999999999988 4467778888888
Q ss_pred HHHHHhcCC---------------------------------------------------HHHHHHHHHHh-----HhCC
Q 041936 117 IILYGQANM---------------------------------------------------TEHAVRTFKEM-----DEHK 140 (402)
Q Consensus 117 i~~~~~~~~---------------------------------------------------~~~A~~~~~~~-----~~~~ 140 (402)
..++..... +..|.-.+... ...+
T Consensus 111 ~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~ 190 (539)
T KOG0548|consen 111 AQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASG 190 (539)
T ss_pred HHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccc
Confidence 887732200 00000000000 0000
Q ss_pred -------CCC------------C----------HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 141 -------LRH------------S----------VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 141 -------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
..| + ..-...+.++..+..++..|++-+....+. .-+..-++....+|
T Consensus 191 ~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~~ 267 (539)
T KOG0548|consen 191 IEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAVY 267 (539)
T ss_pred cccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHHH
Confidence 001 0 012334556666667777888887777543 33455566777788
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhh-------HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH----------
Q 041936 192 CESSDSSSAYSILAEMDRKSIKPNASS-------FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMY---------- 254 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------- 254 (402)
...|.+..+...-....+.|-. ...- +..+..+|.+.++++.+...|++.......|+...-
T Consensus 268 ~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~ 346 (539)
T KOG0548|consen 268 LERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKE 346 (539)
T ss_pred HhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Confidence 8888888887777776666522 2222 233445677788899999998887654434432211
Q ss_pred ---------------HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 255 ---------------NVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 255 ---------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
..-...+.+.|++..|...|.+++.... -|...|....-+|.+.|.+..|++-.+..++. .|
T Consensus 347 ~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p 423 (539)
T KOG0548|consen 347 AERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DP 423 (539)
T ss_pred HHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Cc
Confidence 1123456678999999999999998853 37889999999999999999999988888875 33
Q ss_pred C-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041936 320 N-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 366 (402)
Q Consensus 320 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (402)
+ ...|..=..++....++++|.+.|.+..+.+ +.+......+.++.
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCV 470 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 3 3445444555566678999999999998875 33333333333333
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=8.1e-05 Score=65.95 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=117.6
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 041936 225 GFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN-SVTYSHFIYGFCKDGNFE 303 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 303 (402)
.+...|++++|+..++.+.... +-|...+....+.+.+.++.++|.+.++++... .|+ ......+.+++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3557788999999999988764 455555666778899999999999999999987 555 556677888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
+|+.+++...... +-|+..|..|..+|...|+..++.....+ .+.-.|+++.|...+....
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 9999999988764 34788999999999999998888765543 4566788888888888888
Q ss_pred hcCCCChhhHH
Q 041936 384 EKFTKNVDTWN 394 (402)
Q Consensus 384 ~~~~~~~~~~~ 394 (402)
+....+..+|.
T Consensus 453 ~~~~~~~~~~a 463 (484)
T COG4783 453 QQVKLGFPDWA 463 (484)
T ss_pred HhccCCcHHHH
Confidence 87766666663
No 126
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.55 E-value=2.5e-05 Score=72.27 Aligned_cols=139 Identities=14% Similarity=0.160 Sum_probs=100.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
.+.+......|.+|+.+++.++... .-..-|..+.+-|...|+++.|.++|.+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455667788888888888887764 334457778888899999999988887532 34567788889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 041936 302 FEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGL 381 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (402)
|+.|.++-.+.. |.......|..-..-+-..|++.+|.+++-.. | .|+ ..|..|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 998888776654 33445566666666677788888888877433 3 343 356788888988888888765
Q ss_pred H
Q 041936 382 V 382 (402)
Q Consensus 382 ~ 382 (402)
-
T Consensus 876 ~ 876 (1636)
T KOG3616|consen 876 H 876 (1636)
T ss_pred h
Confidence 3
No 127
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.54 E-value=5.8e-05 Score=70.02 Aligned_cols=294 Identities=14% Similarity=0.124 Sum_probs=134.3
Q ss_pred CCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHH
Q 041936 36 LTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAH 115 (402)
Q Consensus 36 ~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (402)
..+.+.--.+++++...|.|-.|..... .......|......+..++.+..-+++|-++|+++.. +..
T Consensus 612 k~sdgd~laaiqlyika~~p~~a~~~a~---n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dk 679 (1636)
T KOG3616|consen 612 KESDGDGLAAIQLYIKAGKPAKAARAAL---NDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDK 679 (1636)
T ss_pred ccccCccHHHHHHHHHcCCchHHHHhhc---CHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHH
Confidence 3445555567777777777776665431 1112233555666666666766667777777776651 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAF-NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
.+.+|.+.+-+.+|+++-+-.- +..+.+. ......+...|+++.|+..|-+.. ..-..+.+....
T Consensus 680 ale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~----------~~~kaieaai~a 745 (1636)
T KOG3616|consen 680 ALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGA 745 (1636)
T ss_pred HHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhh
Confidence 2333333333444444433211 1111111 112222333444444444443321 011223344444
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
+.|.+|+.+++.+.++.. -..-|..+...|...|+++.|+++|-+.. .++-.|.+|.+.|+++.|.++-
T Consensus 746 kew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHH
Confidence 555555555555544421 22334445555555555555555553321 1334455555555555555544
Q ss_pred HHHHHCCCCCCHHHHHHHH--------------------------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 041936 275 DEMLSKGMKPNSVTYSHFI--------------------------YGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMV 328 (402)
Q Consensus 275 ~~~~~~~~~p~~~~~~~l~--------------------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 328 (402)
.+.. |.......|..-. ..|-+.|..+..+++..+-... .-..|...+.
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~ 889 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFA 889 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHH
Confidence 4332 1222233333333 3344444444433333322111 1123444455
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 041936 329 YFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIG 380 (402)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 380 (402)
.-|-..|+...|..-|-+.. -|.+-++.|-..+.|++|.++-+
T Consensus 890 ~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 55555666666665554332 23444555666666666665543
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=1.3e-05 Score=61.48 Aligned_cols=90 Identities=11% Similarity=-0.080 Sum_probs=36.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (402)
...+...|++++|...|+...... +.+...+..+..++...|++++|...|++..... +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 333334444444444444443332 2233344444444444444444444444444332 23333344444444444444
Q ss_pred HHHHHHHHHHHH
Q 041936 268 AEAKALLDEMLS 279 (402)
Q Consensus 268 ~~a~~~~~~~~~ 279 (402)
++|...|+...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00011 Score=59.43 Aligned_cols=186 Identities=12% Similarity=0.103 Sum_probs=89.8
Q ss_pred ChhHHHHHHHHhhcCC--C-CCCCHH-HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 54 NPEKILEICRAAALTP--E-SHLDRL-AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~--~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
++++.++++..+.... + ..++.. .|..++-+....|+.+.|...++.+..+- +.+..+-..-...+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 5556666555443211 1 222221 23344444455566666666666655322 33332222222224445566666
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
+++++.+.+.+ +.|..++-.-+.+.-..|+--+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++.-
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 66666665554 455555555555555555555555555555442 244555666666666666666666666665554
Q ss_pred CCCCCCHhhHHHHHHHHhccC---CHHHHHHHHHHHHH
Q 041936 210 KSIKPNASSFGALVAGFYKEE---KYEDVNKVLQMMER 244 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 244 (402)
.. +.+...+..+...+.-.| +.+.+.+.|.+..+
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 32 223333344444333222 23344445554444
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.0016 Score=62.09 Aligned_cols=233 Identities=16% Similarity=0.134 Sum_probs=155.1
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINK--LSEANYFNGISQYLEELKTRPDLQNERFHAHSII 118 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 118 (402)
.++.+...+. .+++..|++.......+.+..+ |..++.+ +.+.|+.++|..+++.....+ ..+..+...+-.
T Consensus 12 r~rpi~d~ld-~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~ 85 (932)
T KOG2053|consen 12 RLRPIYDLLD-SSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQN 85 (932)
T ss_pred HHhHHHHHhh-hHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHH
Confidence 3444555554 4578889998888876665554 4444443 567899999999998887433 348888989999
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC--
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD-- 196 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~-- 196 (402)
+|.+.|+.++|..+|+...+. .|+..-...+..+|.+.+++.+-.+.=-++-+. .+-....+=.+++.+.+.-.
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~ 161 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSE 161 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCC
Confidence 999999999999999998876 567777778888899888776543333333232 13344555555555544311
Q ss_pred --------hhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCCHHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHccCC
Q 041936 197 --------SSSAYSILAEMDRKS-IKPNASSFGALVAGFYKEEKYEDVNKVLQ-MMERYGMKSGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 197 --------~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (402)
..-|.+.++.+.+.+ .--+..-...-...+-..|++++|.+++. ...+.-..-+...-+.-+..+...++
T Consensus 162 ~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~ 241 (932)
T KOG2053|consen 162 NELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR 241 (932)
T ss_pred cccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence 234566667666554 22222223333445567888999999994 44333333344445567788888999
Q ss_pred HHHHHHHHHHHHHCCCC
Q 041936 267 CAEAKALLDEMLSKGMK 283 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~ 283 (402)
+.+..++-.++...|..
T Consensus 242 w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 242 WQELFELSSRLLEKGND 258 (932)
T ss_pred hHHHHHHHHHHHHhCCc
Confidence 99999999999888543
No 131
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.44 E-value=0.0018 Score=61.76 Aligned_cols=226 Identities=11% Similarity=0.031 Sum_probs=153.6
Q ss_pred HHhcCCcchHHHHHHHhh-cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 041936 85 LSEANYFNGISQYLEELK-TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKE 163 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 163 (402)
....+++..|.....++. +.|..+-..++.++. ..+.|+.++|..+++.....+ ..|..|...+-.+|.+.++.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 345678889998888877 333333334444444 779999999999999887766 4488999999999999999999
Q ss_pred HHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC----------HH
Q 041936 164 VKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK----------YE 233 (402)
Q Consensus 164 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~ 233 (402)
|..+|++.... -|+......+..+|.+.+++.+-.+.--+|-+. .+-+...|=.+++.+...-. ..
T Consensus 96 ~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 96 AVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999998644 677777777888888888887655554444443 33344444445554433211 23
Q ss_pred HHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 234 DVNKVLQMMERYG-MKSGVSMYNVRIHSLCKLRKCAEAKALLD-EMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRI 311 (402)
Q Consensus 234 ~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (402)
-|.+.++.+.+.+ -.-+..-.-.....+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4556666666544 11222222233445567789999999994 444443333445555667788889999999999999
Q ss_pred HHhCCC
Q 041936 312 MSNSGL 317 (402)
Q Consensus 312 m~~~~~ 317 (402)
+...|.
T Consensus 252 Ll~k~~ 257 (932)
T KOG2053|consen 252 LLEKGN 257 (932)
T ss_pred HHHhCC
Confidence 998864
No 132
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.41 E-value=0.0012 Score=59.45 Aligned_cols=321 Identities=11% Similarity=0.119 Sum_probs=185.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 041936 71 SHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNA 150 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 150 (402)
.+-|..+|+.+|.-+... .++++.+.++++. ...+.....|..-|..-.+..+++.+..+|.+.+.. ..+...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~-~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLV-NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence 345889999999987777 9999999999998 667888889999999999999999999999998765 455677777
Q ss_pred HHHHHHHc-CCH----HHHHHHHHHchhhcCCCCCH-HHHHHHHHH---------HHhcCChhHHHHHHHHHHhC-----
Q 041936 151 LLLALTIA-KDY----KEVKRVFIEFPKTYGIKPDL-DTYNRVIKA---------FCESSDSSSAYSILAEMDRK----- 210 (402)
Q Consensus 151 l~~~~~~~-~~~----~~a~~~~~~~~~~~~~~p~~-~~~~~li~~---------~~~~~~~~~a~~~~~~~~~~----- 210 (402)
.++--.+. ++. +...+.|+-.....|..+-. ..|+..+.- +..+.+++...++|++++..
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 66543322 222 22233333333443433221 123332221 22222333444444444332
Q ss_pred ---------------------------------------------CCCCCHhh---------------HHHHHHH-----
Q 041936 211 ---------------------------------------------SIKPNASS---------------FGALVAG----- 225 (402)
Q Consensus 211 ---------------------------------------------g~~~~~~~---------------~~~l~~~----- 225 (402)
|+..+..+ |..+|.-
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 11100000 1111100
Q ss_pred --------------------------------------------HhccCC-------HHHHHHHHHHHHHCCCCCChhhH
Q 041936 226 --------------------------------------------FYKEEK-------YEDVNKVLQMMERYGMKSGVSMY 254 (402)
Q Consensus 226 --------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 254 (402)
+...|+ .+++.++++.....-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 11222222222111111111112
Q ss_pred HHHHHHHH---ccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHH
Q 041936 255 NVRIHSLC---KLRKCAEAKALLDEMLSK-GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP-NSSVYFTMVY 329 (402)
Q Consensus 255 ~~ll~~~~---~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~ 329 (402)
..+...-- ..+..+...++++++... ...|+ -+|...|+.-.+..-+..|..+|.+..+.+..+ +...+++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 21111100 001234445555555543 22332 356777787788888999999999999987777 6777788887
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCC--ChhhHHHHHh
Q 041936 330 FMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK-FTK--NVDTWNEIEA 398 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--~~~~~~~l~~ 398 (402)
.|| .++.+-|.++|+--+++ +..++..-...+..+...++-..+..+|+++... .++ ....|..+++
T Consensus 411 y~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 765 67889999999876664 2344555566778888888888999999988876 232 3456776654
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=2.1e-05 Score=59.83 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
.....+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..+++...+.. +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 344455555666666666666666665544 4455666666666666666666666666654321 3344555555666
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 041936 191 FCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~ 210 (402)
+...|++++|.+.|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666554
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=9.6e-05 Score=69.44 Aligned_cols=258 Identities=13% Similarity=0.133 Sum_probs=139.4
Q ss_pred CHHHHHHHHH--HHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-C--------CC
Q 041936 74 DRLAFSIAIN--KLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH-K--------LR 142 (402)
Q Consensus 74 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~--------~~ 142 (402)
|..|-..+++ .|...|+.+.|.+-++.++ +..+|..+..+|.+..+.|-|.-.+-.|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4455555554 3566688888876666554 4467888888888888888887776666431 1 01
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 041936 143 HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGAL 222 (402)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 222 (402)
++ .+-....-.....|.+++|..+|.+. ++ |..|=+.|...|.|++|.++-+.=.+..+ ..||...
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~c-kR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQC-KR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHH-HH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence 21 11112223345678888888888887 43 55566677778888888887664433222 2456666
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 041936 223 VAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNF 302 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 302 (402)
..-+-..++.+.|++.|++.... --.++..|. .++.....+.+++. |...|..-.......|+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccch
Confidence 66666777888888777654211 111111110 12222222222222 334444444444455555
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 041936 303 EEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLV 382 (402)
Q Consensus 303 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (402)
+.|+.+|..... |-++++..|-.|+.++|-++-++- | |....-.|.+.|-..|++.+|..+|.+.
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555555554432 334444445555555555544322 1 2333334445555555555555555443
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00038 Score=56.50 Aligned_cols=186 Identities=12% Similarity=0.055 Sum_probs=111.1
Q ss_pred CcchHHHHHHHhh---cCC-CCCch-HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 041936 90 YFNGISQYLEELK---TRP-DLQNE-RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 90 ~~~~a~~~~~~~~---~~~-~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
+.++..+++.++. ..+ ..++. .++..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 4555666665555 111 11221 345555666677788888888888876653 33333322223334556778888
Q ss_pred HHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 165 KRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
+++|+.+.+.. +.|..++.-=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 106 ~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 88888776543 445556655555555566666777777776665 455777788888888888888888777777776
Q ss_pred CCCCCChhhHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 041936 245 YGMKSGVSMYNVRIHSLCKL---RKCAEAKALLDEMLSK 280 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 280 (402)
.. |.+...+..+...+.-. .+.+-+.++|.+..+.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 54 23333334444433322 3455666777766655
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=2.2e-05 Score=59.65 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=44.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
...+...+...|++++|.+.|+.+...+. .+...+..+...+...|++++|..+++...+.+ ..+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 33444444455555555555555544321 134444444555555555555555555544432 1123344444444555
Q ss_pred cCChHHHHHHHHHHHh
Q 041936 334 GGDYETALGFCKESIA 349 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~ 349 (402)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554444
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.34 E-value=0.00016 Score=69.47 Aligned_cols=333 Identities=11% Similarity=0.004 Sum_probs=179.2
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhc-CCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKT-RPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
...+..+|..-|+.+-.-.. .|..........+++..+++.|..+.-.... .+......-|....-.|.+.++...|
T Consensus 504 d~~Dm~RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~a 581 (1238)
T KOG1127|consen 504 DSDDMKRAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGA 581 (1238)
T ss_pred HHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhH
Confidence 33355566666655543322 2456677777777777777777777322221 11111112222334456677778888
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHH
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLD-TYNRVIKAFCESSDSSSAYSILAEMD 208 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~ 208 (402)
+.-|+...+.. +.|...|..++.+|...|++..|.++|++.. -+.|+.. .---....-+..|.+.+|+..+....
T Consensus 582 V~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 582 VCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888777665 6677788888888888888888888887774 2244432 11122333456788888888777665
Q ss_pred hC------CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH-------HCCCCCChhhHHHHHHHH--------------
Q 041936 209 RK------SIKPNASSFGALVAGFYKEEKYEDVNKVLQMME-------RYGMKSGVSMYNVRIHSL-------------- 261 (402)
Q Consensus 209 ~~------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~ll~~~-------------- 261 (402)
.. +..--..++-.+...+...|-..++..+++.-+ ......+...|-.+-++|
T Consensus 658 ~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h 737 (1238)
T KOG1127|consen 658 YAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMH 737 (1238)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHH
Confidence 42 111112233333333333333333333333221 111111122221111111
Q ss_pred -----H----ccCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC----CHHHHHHHHHHHHhCCCC
Q 041936 262 -----C----KLRKC---A---EAKALLDEMLSKGMKPNSVTYSHFIYGFCK----DG----NFEEAKKFYRIMSNSGLS 318 (402)
Q Consensus 262 -----~----~~~~~---~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~----~~~~a~~~~~~m~~~~~~ 318 (402)
. ..+.. + -+.+.+-.-.+ ...+..+|..++..|.+ .+ +...|+..+...++.. .
T Consensus 738 ~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-a 814 (1238)
T KOG1127|consen 738 YLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-A 814 (1238)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-h
Confidence 1 11111 1 01111100000 01123334444433332 11 2235667777666542 2
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHH
Q 041936 319 PNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWN 394 (402)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 394 (402)
-+..+|+.|... ...|.+.-+...|-+-.... +.+..+|..+...+.+..+++-|...|...+...|.|...|-
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~Wl 888 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWL 888 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHH
Confidence 356667766555 66677777777776655543 556778888888889999999999999999988888888874
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=3.8e-05 Score=68.38 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=79.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG 335 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 335 (402)
.++..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++++...... -+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 34445555667777777777777662 33 333466666666677777777777765422 24555555566677777
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 336 DYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
+.+.|..+.+++.+.. +-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777653 4455677777777777777777777777654
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.28 E-value=0.00077 Score=64.95 Aligned_cols=184 Identities=13% Similarity=0.018 Sum_probs=122.9
Q ss_pred cchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041936 91 FNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 170 (402)
...+...|-+.. +.++.-...|..+...|....+...|.+.|++..+.+ ..+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~al-rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRAL-RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444443333 2233334557777777888778888999999888776 56777788888999999999999888433
Q ss_pred chhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 041936 171 FPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG 250 (402)
Q Consensus 171 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (402)
..+......-...|.-..-.|.+.++..+|+..|+...+.. +.|...|..++.+|...|++..|.++|.+..... |+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence 32211000111223334445677888889999999888775 4477888999999999999999999998887653 33
Q ss_pred h-hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 251 V-SMYNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 251 ~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
. ..---...+-+..|.+.++...+.....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 2212222344567888888888877654
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=3.9e-05 Score=68.30 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+-..-..++..+...++++.|.++++++.... | .....++..+...++-.+|.+++++..+.. +.+......-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666667778888888888877432 2 244456777777777888888888877654 556666777777
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+.+.++.+.|+.+.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.+.-
T Consensus 243 fLl~k~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 788888888888888877643 444 45788888888888888888887776653
No 141
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.21 E-value=3.5e-05 Score=68.94 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=99.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH
Q 041936 177 IKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK--SIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMY 254 (402)
Q Consensus 177 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (402)
.+-+......++..+....+++.+..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3556777888888888888888899988888765 23233456678999999999999999999988889999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041936 255 NVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKD 299 (402)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 299 (402)
|.+++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999888877666777777767766665
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=8.9e-05 Score=57.04 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=8.5
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 041936 190 AFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+...|++++|...|+....
T Consensus 57 ~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 57 AAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHh
Confidence 33344444444444444443
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.6e-06 Score=47.40 Aligned_cols=33 Identities=30% Similarity=0.661 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN 215 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~ 215 (402)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455566666666666666666666655555554
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.7e-06 Score=47.37 Aligned_cols=31 Identities=45% Similarity=0.822 Sum_probs=12.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3444444444444444444444444444333
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=9.1e-05 Score=54.71 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS--PNSSVYFTMVYFMCKGGDYETALGFCKESIAKGW--VPNFTTMKSLV 363 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 363 (402)
++..+...+...|++++|.+.|..+...... .....+..+..++.+.|++++|...++.+..... +.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555666666777777777666654211 1123445566666677777777777776665421 11234555566
Q ss_pred HHHHcCCChHHHHHHHHHHHhcCCCChhhHHH
Q 041936 364 TGLAGASKVSEAKELIGLVKEKFTKNVDTWNE 395 (402)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 395 (402)
.++.+.|+.++|.+.++++.+..|.+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 66667777777777777777666666555544
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.20 E-value=0.00013 Score=56.07 Aligned_cols=85 Identities=11% Similarity=-0.028 Sum_probs=34.0
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSV--GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 195 (402)
..+...|++++|...|+........+.. .....+...+...|++++|+..++... .. ......+......|...|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~--~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DE--AFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-Cc--chHHHHHHHHHHHHHHCC
Confidence 3444445555555555444443311111 122223344444444444444444331 11 122223334444444444
Q ss_pred ChhHHHHHHH
Q 041936 196 DSSSAYSILA 205 (402)
Q Consensus 196 ~~~~a~~~~~ 205 (402)
++++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 4444444444
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=3.5e-06 Score=46.56 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS 318 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 318 (402)
+|+.++.+|++.|+++.|.++|+.|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.17 E-value=3.1e-05 Score=54.39 Aligned_cols=75 Identities=25% Similarity=0.476 Sum_probs=38.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041936 223 VAGFYKEEKYEDVNKVLQMMERYGM-KSGVSMYNVRIHSLCKLR--------KCAEAKALLDEMLSKGMKPNSVTYSHFI 293 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 293 (402)
|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544321 2234455555555555555555555555
Q ss_pred HHHH
Q 041936 294 YGFC 297 (402)
Q Consensus 294 ~~~~ 297 (402)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.14 E-value=5.1e-05 Score=67.94 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=102.7
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 041936 210 KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG--MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSV 287 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 287 (402)
.+.+.+.....++++.+....+.+.+..++.+..... ...-..|..++++.|.+.|..++++++++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3456678888889999888888999999998887652 22334455699999999999999999999988999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKG 334 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 334 (402)
+++.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998887766777777666666555
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=4.7e-06 Score=46.00 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345555555555555555555555555555554
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.99 E-value=0.00038 Score=51.36 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCC-CCCHHHHHHHHHHH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKL--RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGI-KPDLDTYNRVIKAF 191 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~ 191 (402)
.....+.+.|++++|.+.|..+.+... +.....+..+..++.+.|+++.|...|+.+.....- +.....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444445555555555555443220 001223334444555555555555555544332110 01123344444444
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 041936 192 CESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~ 210 (402)
.+.|+.++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4455555555555544443
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.97 E-value=0.00018 Score=50.70 Aligned_cols=76 Identities=14% Similarity=0.289 Sum_probs=40.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccC--------ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGL-SPNSSVYFTMVYFMCKGG--------DYETALGFCKESIAKGWVPNFTTMKSLV 363 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (402)
|..|...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 455555555555444321 2334555666666666666666666666
Q ss_pred HHHHc
Q 041936 364 TGLAG 368 (402)
Q Consensus 364 ~~~~~ 368 (402)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 65544
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.97 E-value=0.00042 Score=59.69 Aligned_cols=130 Identities=8% Similarity=0.131 Sum_probs=57.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG-FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|.++|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444555555555555555555554321 1122233322222 11233444455555555543 222344455555555
Q ss_pred HccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 332 CKGGDYETALGFCKESIAKGWVPN---FTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.+.|+.+.|..+|++.+.. +.++ ...|...++.-.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443 1111 135555555555555555555555555554
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=0.00021 Score=49.86 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 195 (402)
+...+...|++++|...++...+.. +.+...+..+..++...+++++|.+.++...+.. +.+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHHH
Confidence 3344444555555555555544432 2233444444455555555555555555443221 222234444444455555
Q ss_pred ChhHHHHHHHHHH
Q 041936 196 DSSSAYSILAEMD 208 (402)
Q Consensus 196 ~~~~a~~~~~~~~ 208 (402)
+++.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555544443
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.94 E-value=0.0023 Score=55.39 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-hHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSGLS-----PNSS-VYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
+..+...+.+.|++++|.++|+++...-.. .+.. .|...+-++...||...|.+.+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555555555555555443111 1111 112222233444555555555555543
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00024 Score=49.59 Aligned_cols=91 Identities=22% Similarity=0.225 Sum_probs=43.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASK 371 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (402)
+...+...|++++|..++....+... .+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 34444445555555555555544321 122334444444555555555555555554432 2233444455555555555
Q ss_pred hHHHHHHHHHHHh
Q 041936 372 VSEAKELIGLVKE 384 (402)
Q Consensus 372 ~~~a~~~~~~~~~ 384 (402)
+++|...++...+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555443
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.90 E-value=0.0044 Score=53.60 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=50.2
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHH----CCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-----CCHH-H
Q 041936 222 LVAGFYKE-EKYEDVNKVLQMMER----YGMKS--GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK-----PNSV-T 288 (402)
Q Consensus 222 l~~~~~~~-~~~~~a~~~~~~~~~----~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~-~ 288 (402)
+...|... |++++|.+.|++..+ .+ .+ -..++..+...+.+.|++++|.++|++....-.. .+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33445555 667777766665543 12 11 1234555666777777777777777777654222 1111 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
|...+-++...||...|.+.+++....
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233344556677777888877777654
No 158
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.88 E-value=0.0004 Score=55.32 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=51.6
Q ss_pred CCHhhHHHHHHHHh-----ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC----------------CHHHHHH
Q 041936 214 PNASSFGALVAGFY-----KEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLR----------------KCAEAKA 272 (402)
Q Consensus 214 ~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~~ 272 (402)
.+..+|..++..|. +.|..+-....+..|.+.|+..|..+|+.|++.+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 35666666666664 34667777777777777777777777877777765421 2233445
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041936 273 LLDEMLSKGMKPNSVTYSHFIYGFCKD 299 (402)
Q Consensus 273 ~~~~~~~~~~~p~~~~~~~l~~~~~~~ 299 (402)
++++|...|+-||..|+..+++.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 555555555555555555555544443
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.87 E-value=1.9e-05 Score=42.47 Aligned_cols=29 Identities=28% Similarity=0.622 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRKS 211 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g 211 (402)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444443
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.86 E-value=0.016 Score=50.69 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
.+.+..|.-+...|+...|.++-.+.. .||...|...+.+++..++|++-.++... +-++..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345556777778899888888877664 47899999999999999999988776432 12457789999999
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 041936 332 CKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
.+.|...+|..++.++ + +..-+..|.+.|++.+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 9999999999888762 2 13456788899999888776
No 161
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2.6e-05 Score=41.91 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=10.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33333333333333333333333333
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.85 E-value=0.00041 Score=59.72 Aligned_cols=133 Identities=8% Similarity=0.040 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHh-cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQ-ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (402)
.+|..++..+-+.+..+.|..+|.... .....+..+|......-.. .++.+.|..+|+...+. .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~-~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRAR-KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777766 2233344555555544333 45555577777766654 25566666666777
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKP-DLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
+...++.+.|..+|++.+....... ....|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776654311111 1235666666666666666666666666553
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.85 E-value=0.00097 Score=50.70 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA 158 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (402)
-.+...+...|++++|.++|+.+. .-++.+...|..+..++-..|++++|+..|......+ +.++..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~-~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLT-IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 334444556677777777776666 3345555666666666667777777777777666655 45666666666677777
Q ss_pred CCHHHHHHHHHHchhhc
Q 041936 159 KDYKEVKRVFIEFPKTY 175 (402)
Q Consensus 159 ~~~~~a~~~~~~~~~~~ 175 (402)
|+.+.|.+-|+..+...
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 77777777766665443
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.84 E-value=0.0016 Score=51.65 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDRKSIKPN--ASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444444444444444433221111 22344444444444444444444444443
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.83 E-value=0.0082 Score=50.43 Aligned_cols=58 Identities=7% Similarity=0.139 Sum_probs=42.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 326 TMVYFMCKGGDYETALGFCKESIAK--GWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
.+.+.|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556677788888888888888775 434455666677788888888888887776554
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.83 E-value=3.5e-05 Score=52.98 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 041936 300 GNFEEAKKFYRIMSNSGL-SPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 300 ~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
|+++.|+.+++++.+... .++...+..+..+|.+.|++++|..++++ .+.+ ..+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555555555554422 11233333345555555555555555554 2111 11223333345555555555555555
Q ss_pred HHH
Q 041936 379 IGL 381 (402)
Q Consensus 379 ~~~ 381 (402)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00079 Score=60.18 Aligned_cols=93 Identities=17% Similarity=0.058 Sum_probs=76.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 336 (402)
-...+...|++++|++.|+++++.... +...|..+..+|...|++++|+..+++.+.... .+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 345566789999999999999887433 567788888899999999999999999988642 256778888889999999
Q ss_pred hHHHHHHHHHHHhCC
Q 041936 337 YETALGFCKESIAKG 351 (402)
Q Consensus 337 ~~~a~~~~~~~~~~~ 351 (402)
+++|...|++.++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998764
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.79 E-value=0.00097 Score=52.73 Aligned_cols=61 Identities=11% Similarity=-0.045 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDRKSIKP--NASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
|..+...+...|++++|...|++.......+ ...++..+..++...|++++|+..++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555554444331111 112444444445555555555555544443
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.79 E-value=0.0047 Score=47.92 Aligned_cols=160 Identities=11% Similarity=0.010 Sum_probs=112.8
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 121 (402)
.+.+...+.+.-||++.++-..... ..-|+...--.+...+.+.|+..+|...|++........+..+...+.++..
T Consensus 59 a~~~~~a~~q~ldP~R~~Rea~~~~---~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 59 AHTLLMALQQKLDPERHLREATEEL---AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred hHHHHHHHHHhcChhHHHHHHHHHH---hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 3456666777778887765544332 3345566667788888999999999999999887777788888888888888
Q ss_pred hcCCHHHHHHHHHHhHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 041936 122 QANMTEHAVRTFKEMDEHKL-RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSA 200 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 200 (402)
..+++..|...++++-+.+. ..++.+.-.+.+.+...|....|..-|+....- -|+...-......+.+.|+.+++
T Consensus 136 a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHH
Confidence 99999999999998876531 112334456677888888888888888887533 56665555555556667766665
Q ss_pred HHHHHHH
Q 041936 201 YSILAEM 207 (402)
Q Consensus 201 ~~~~~~~ 207 (402)
..-+.++
T Consensus 213 ~aq~~~v 219 (251)
T COG4700 213 NAQYVAV 219 (251)
T ss_pred HHHHHHH
Confidence 5444333
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.77 E-value=0.018 Score=48.46 Aligned_cols=57 Identities=11% Similarity=-0.088 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNS--GLSPNSSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
.+..-|.+.|.+..|..-++.+++. +..........++.+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3455566777777777777777765 23333455566667777777777777665544
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.76 E-value=0.00012 Score=50.27 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHhHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 123 ANMTEHAVRTFKEMDEHKLR-HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++.. +.. +.+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-THH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35555555555555544311 12333334555555556666655555541 111 111222333455555555555555
Q ss_pred HHHHH
Q 041936 202 SILAE 206 (402)
Q Consensus 202 ~~~~~ 206 (402)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.76 E-value=0.00081 Score=60.12 Aligned_cols=91 Identities=12% Similarity=-0.034 Sum_probs=62.3
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 82 INKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
...+...|++++|++.++++.. ..+.+...+..+..+|...|++++|+..++...+.+ +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~-~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID-LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3445566777777777777763 344556666667777777777777777777777665 45666677777777777777
Q ss_pred HHHHHHHHHchhh
Q 041936 162 KEVKRVFIEFPKT 174 (402)
Q Consensus 162 ~~a~~~~~~~~~~ 174 (402)
++|+..|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776543
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.75 E-value=0.0028 Score=50.30 Aligned_cols=87 Identities=3% Similarity=-0.031 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRH--SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
..+..+...+...|++++|...|++..+.+..+ ....+..+..++.+.|++++|...+++..+.. +-+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 344555555666666666666666665432111 12455566666666666666666666654321 22334444555
Q ss_pred HHHHhcCChhH
Q 041936 189 KAFCESSDSSS 199 (402)
Q Consensus 189 ~~~~~~~~~~~ 199 (402)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 55555555433
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0039 Score=54.46 Aligned_cols=257 Identities=12% Similarity=-0.008 Sum_probs=127.5
Q ss_pred HHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 041936 85 LSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
+-+..++..|++.+...++. .+.+...|..-+..+...|++++|.--.++-.+.. +-........-.++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~-~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDM-CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHh-CccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 44455666666666666632 33445556666666777777777766665544322 11122222333333334444444
Q ss_pred HHHHH---------------HchhhcCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 041936 165 KRVFI---------------EFPKTYGIKPDLDTYNRVI-KAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK 228 (402)
Q Consensus 165 ~~~~~---------------~~~~~~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (402)
.+.++ .......-+|...+|..+- .++.-.|+.++|.+.--..++.. ..+......=..++.-
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccccc
Confidence 43332 2211111223334444332 34445677777766665555442 1122222222233445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHH-------------HHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 041936 229 EEKYEDVNKVLQMMERYGMKSGVSMYN-------------VRIHSLCKLRKCAEAKALLDEMLSK---GMKPNSVTYSHF 292 (402)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l 292 (402)
.++.+.+...|++....+ |+...-. .-.+-..+.|++.+|.+.|.+.+.. +..|+...|...
T Consensus 216 ~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 566777777777666544 4322211 1122234556667777777766643 233444556555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH---HHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY---FTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.....+.|+.++|+.--++..+. |.... ..-..++...+++++|.+-++...+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666667777766666665542 32222 22223344456666666666666554
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00044 Score=57.65 Aligned_cols=100 Identities=24% Similarity=0.257 Sum_probs=77.0
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChH
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYE 338 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~ 338 (402)
-+.+.+++.+|+..|.+.++.... |.+.|..-..+|.+.|.++.|++-.+..+.- .|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 456778899999999988887333 6777888888899999999888888877763 344 568888888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041936 339 TALGFCKESIAKGWVPNFTTMKSLVT 364 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (402)
+|.+.|++.++. .|+-.+|..=+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 999988888765 566666654443
No 176
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.72 E-value=0.03 Score=49.73 Aligned_cols=83 Identities=11% Similarity=-0.013 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 041936 72 HLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNAL 151 (402)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 151 (402)
+.|...|-.++..+...+..++..++++++. .+.+.-+..|..-+..-...+++..+..+|.+..... .+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~-~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLS-SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhc-CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 3477899999999999999999999999998 6777777888888887777899999999999988764 446666666
Q ss_pred HHHHHH
Q 041936 152 LLALTI 157 (402)
Q Consensus 152 ~~~~~~ 157 (402)
++--.+
T Consensus 116 l~YIRr 121 (660)
T COG5107 116 LEYIRR 121 (660)
T ss_pred HHHHHh
Confidence 654443
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.71 E-value=0.0015 Score=49.63 Aligned_cols=87 Identities=8% Similarity=0.002 Sum_probs=40.4
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041936 225 GFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE 304 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 304 (402)
.+...|++++|.++|+-+.... +-+..-|-.|.-++-..|++++|+..|.......+. |...+-.+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHH
Confidence 3344455555555555444433 233333444444444445555555555554444322 34444444555555555555
Q ss_pred HHHHHHHHH
Q 041936 305 AKKFYRIMS 313 (402)
Q Consensus 305 a~~~~~~m~ 313 (402)
|.+.|+..+
T Consensus 122 A~~aF~~Ai 130 (157)
T PRK15363 122 AIKALKAVV 130 (157)
T ss_pred HHHHHHHHH
Confidence 555544444
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.71 E-value=0.00029 Score=46.07 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
.+.|++++|++.|+++.+.. +.+...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 35677777777777777665 556777777777777778888888777777654 4554444433
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.67 E-value=0.0025 Score=50.37 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLSP--NSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
..+...+...|++++|...|.+.......+ ...++..+...+...|++++|...+++...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444321111 112344444444445555555555544443
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.67 E-value=0.0019 Score=51.55 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----------------cCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK----------------EEKYEDVNKVLQMMERYGMKSGVSMYNVRI 258 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 258 (402)
|.++=....+..|.+-|+.-|..+|+.|++.+=+ -.+-+-|++++++|...|+-||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3444444445555555555555555555554432 122467888888888888888888888888
Q ss_pred HHHHccCC
Q 041936 259 HSLCKLRK 266 (402)
Q Consensus 259 ~~~~~~~~ 266 (402)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 88877654
No 181
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.057 Score=51.10 Aligned_cols=319 Identities=13% Similarity=0.070 Sum_probs=183.3
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCc--chH-HHHHHHhhcCCCCCchHHHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYF--NGI-SQYLEELKTRPDLQNERFHAHS 116 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a-~~~~~~~~~~~~~~~~~~~~~l 116 (402)
-...-++..+...+.+..|.++..|+....... ...|........+..+. +++ ..+-+++. ... ...-.|..+
T Consensus 438 l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~--~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~i 513 (829)
T KOG2280|consen 438 LSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG--DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAI 513 (829)
T ss_pred hchhhhhHHHHhcchhHHHHHHHHHhCCccccc--cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHH
Confidence 334457778888899999999999997664332 34566666666666322 223 33333333 222 334456777
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc----------CCCCCHH
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLR----HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY----------GIKPDLD 182 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~p~~~ 182 (402)
..-...+|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-++.++. ..+....
T Consensus 514 A~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~ 593 (829)
T KOG2280|consen 514 ARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALS 593 (829)
T ss_pred HHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhH
Confidence 77778899999999888753322210 122234455666677788877777776663321 0111112
Q ss_pred HHHHHHHH--------HHhcCChhHHHHHH--HHHHhCC-CCCCHhhHHHHHHHHhccCCHHHHH----------HHHHH
Q 041936 183 TYNRVIKA--------FCESSDSSSAYSIL--AEMDRKS-IKPNASSFGALVAGFYKEEKYEDVN----------KVLQM 241 (402)
Q Consensus 183 ~~~~li~~--------~~~~~~~~~a~~~~--~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~----------~~~~~ 241 (402)
.|.-+++- +...++-.++...| +...... +.+-........+++.+.....-.. ++.+.
T Consensus 594 lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 594 LYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22222220 11111111111111 1100000 1111122333344444443322111 11222
Q ss_pred HHH-CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041936 242 MER-YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN 320 (402)
Q Consensus 242 ~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 320 (402)
+.. .|..-..-+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.+..
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------ 743 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------ 743 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------
Confidence 221 2222333345555666677899999988877765 57999999999999999999988777665542
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 041936 321 SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGL 381 (402)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (402)
+.-|.-++.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.++--+
T Consensus 744 PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 744 PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred CCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 45577789999999999999998865422 11 467788899999888876443
No 182
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0051 Score=50.48 Aligned_cols=221 Identities=13% Similarity=0.020 Sum_probs=130.2
Q ss_pred hhhhhhhhhhhcccccC--CCCCCCCCCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC
Q 041936 12 NLFSQKHHRYLATSSIL--SSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEAN 89 (402)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 89 (402)
+-|.+..-++...|..- ..+|.-|++-+.....+ ....|+|.+.+.-+..... .-..++..+....
T Consensus 96 ~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~---~~~lgnpqesLdRl~~L~~---------~V~~ii~~~e~~~ 163 (366)
T KOG2796|consen 96 GNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAEL---QQYLGNPQESLDRLHKLKT---------VVSKILANLEQGL 163 (366)
T ss_pred ccCCCcceeeeeccccCCCCcCccccHHHHHHHHHH---HHhcCCcHHHHHHHHHHHH---------HHHHHHHHHHhcc
Confidence 44455555555554332 23333344433333332 3345677776665554421 1233344444334
Q ss_pred CcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041936 90 YFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFI 169 (402)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (402)
..+.-.++|++=. ..+-..++..+.-.|.+.-...++++..+.+.+.++.....|++.-.+.|+.+.|...|+
T Consensus 164 ~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 164 AEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred chhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4466666676533 123445566666777888888888888877656677777888888888888888888888
Q ss_pred HchhhcCCCCCHHHHHHH-----HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 170 EFPKTYGIKPDLDTYNRV-----IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 170 ~~~~~~~~~p~~~~~~~l-----i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
+..+. .-+.|..+.+.+ ...|...+++..|...+.+....+ +.|+...|.-.-+..-.|+...|.+.++.|.+
T Consensus 237 ~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 237 DVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66433 223344444333 344566777888888887777664 23455555444445556888888888888877
Q ss_pred CCCCCChhhHH
Q 041936 245 YGMKSGVSMYN 255 (402)
Q Consensus 245 ~~~~~~~~~~~ 255 (402)
.- |...+-+
T Consensus 315 ~~--P~~~l~e 323 (366)
T KOG2796|consen 315 QD--PRHYLHE 323 (366)
T ss_pred cC--Cccchhh
Confidence 53 4444444
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.0057 Score=57.30 Aligned_cols=144 Identities=11% Similarity=0.027 Sum_probs=101.2
Q ss_pred CCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhc--------CChhHHHHHHH
Q 041936 140 KLRHSVGAFNALLLALTIAK-----DYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCES--------SDSSSAYSILA 205 (402)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------~~~~~a~~~~~ 205 (402)
..+.+...|...+.+..... +.+.|..+|++.++. .|+ ...|..+..++... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33788888888888755432 367899999998765 555 34444443333221 12345555555
Q ss_pred HHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 206 EMDRK-SIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 206 ~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
+.... ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.... .|
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 54443 234455777777666777899999999999999876 68889999999999999999999999998876 44
Q ss_pred CHHHHH
Q 041936 285 NSVTYS 290 (402)
Q Consensus 285 ~~~~~~ 290 (402)
...||.
T Consensus 485 ~~pt~~ 490 (517)
T PRK10153 485 GENTLY 490 (517)
T ss_pred CCchHH
Confidence 444543
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.043 Score=48.02 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=86.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGF 296 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 296 (402)
.+.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..+++++...+... . -++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 355666777788899888888766653 58999999999999999999988776442 1 2457789999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 297 CKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
.+.|+..+|..+..++ .+..-+..|.+.|++.+|.+...+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999988772 2255677889999999998765433
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.59 E-value=0.0035 Score=45.86 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHcc
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMKPN--SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS--PNSSVYFTMVYFMCKG 334 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~ 334 (402)
.++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..++++....... .+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666666666666665554432 223444555555566666666666655543111 0111112222344555
Q ss_pred CChHHHHHHHHHHH
Q 041936 335 GDYETALGFCKESI 348 (402)
Q Consensus 335 g~~~~a~~~~~~~~ 348 (402)
|+.++|...+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666655554443
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.58 E-value=0.00043 Score=44.76 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 328 VYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
...+...|++++|...|+++++.. +-+...+..+..++.+.|++++|...|+++.+..|.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 345566677777777777776654 445666666666677777777777777776665443
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0091 Score=55.98 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhcc--------CCHHHHHHHHHHH
Q 041936 177 IKPDLDTYNRVIKAFCESS-----DSSSAYSILAEMDRKSIKPN-ASSFGALVAGFYKE--------EKYEDVNKVLQMM 242 (402)
Q Consensus 177 ~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 242 (402)
.+.+...|...+++..... +.+.|..+|++..+. .|+ ...|..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3678888998888755432 367899999999986 444 44454443333221 1234455555544
Q ss_pred HHC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041936 243 ERY-GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS 321 (402)
Q Consensus 243 ~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 321 (402)
... ..+.+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|...+.+.... .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 332 124455778877777777899999999999999874 68889999999999999999999999999875 4444
Q ss_pred HhH
Q 041936 322 SVY 324 (402)
Q Consensus 322 ~~~ 324 (402)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 444
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.53 E-value=0.026 Score=43.95 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=64.8
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 041936 213 KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG---MKPNSVTY 289 (402)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~ 289 (402)
.|+...-..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 344445555555666666666666666655544344455555555555555666666666666655542 1222 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHH
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALG 342 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 342 (402)
-.+.+.+...|.+..|+.-|+..... -|+...-......+.+.|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 34455555566666666666655553 2333333333333445554444433
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.032 Score=52.25 Aligned_cols=239 Identities=8% Similarity=0.035 Sum_probs=142.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH----------HHHhcCCHHHHHHHHHHhHhCCC
Q 041936 72 HLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII----------LYGQANMTEHAVRTFKEMDEHKL 141 (402)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----------~~~~~~~~~~A~~~~~~~~~~~~ 141 (402)
.|-+..|..+.......-.++.|..-|-.... -+...+...+-. .-+--|++++|.++|-+|.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 35667888888888777778888777765442 122212212111 1223588999999988886543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGA 221 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (402)
..+..+.+.|++-.+.++++.--....-..-...|+.+...+.....|++|.+.|..-... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3567788889988888877543111001112356888888888888888888887654321 23
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
.+.++.+..++++.+.+-..+ +.+....-.+.+++.+.|.-++|.+.|-+-- .| ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 456666666666655544443 3455556667778888888777777664432 11 235566777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhH--------------HHHHHHHHccCChHHHHHHHHHHHh
Q 041936 302 FEEAKKFYRIMSNSGLSPNSSVY--------------FTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
|.+|.++-++..-. ...+. ---|..+.+.|++-.|.+++.+|.+
T Consensus 894 W~~avelaq~~~l~----qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 894 WGEAVELAQRFQLP----QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHhccch----hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 77777766654321 11111 1123445566666666666666654
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0088 Score=50.34 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---cCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK---GGDYETALGFCKESIAKGWVPNFTTMKS 361 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (402)
|...|..|..+|...|+.+.|..-|.+..+.. .++...+..+..++.. ..+..++..++++++..+ +-++.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 67778788888888888888888887777651 1244455555554433 234567777888877765 556677777
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCCCh
Q 041936 362 LVTGLAGASKVSEAKELIGLVKEKFTKNV 390 (402)
Q Consensus 362 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 390 (402)
|...+...|++.+|...|+.|.+..++|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77777788888888888888887655553
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.49 E-value=0.0083 Score=43.94 Aligned_cols=92 Identities=16% Similarity=0.084 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHS--VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVI 188 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li 188 (402)
....++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++..... |+ ......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHH
Confidence 344556667777777777777777664433 2345556666777777777777777765442 32 12222333
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 041936 189 KAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~ 209 (402)
-++...|+.++|+.++-....
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 455566777777776655443
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.48 E-value=0.00073 Score=43.66 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=34.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
...+.+.|++++|...|+.+.+.. +-+...+..+..++...|++++|..+|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556666666666666666554 445556666666666666666666666666443
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=0.00029 Score=46.05 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=33.9
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 333 KGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
..|++++|.++++++.+.. +-+...+..+..+|.+.|++++|.++++.+....+.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4566666666666666553 3355566666666666666666666666666654443
No 194
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0022 Score=53.58 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=64.3
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHHhcCChh
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP-DLDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~ 198 (402)
+.+.+++.+|+..|.+.++.. +.|...|..-..+|.+.|.++.|++-.+..+.. .| -..+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHccCcHH
Confidence 556677777777777777664 455666666667777777777777666655432 22 2346677777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 041936 199 SAYSILAEMDRKSIKPNASSFGALVAG 225 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~~~~~~l~~~ 225 (402)
+|++.|++.++ +.|+..+|-.=+..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 77777777666 35666565544443
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.43 E-value=0.024 Score=46.35 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=28.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChHHH
Q 041936 327 MVYFMCKGGDYETALGFCKESIAK--GWVPNFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 327 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 375 (402)
+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455677777777777777777765 1111223445566677777766643
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.41 E-value=0.00078 Score=44.12 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHh
Q 041936 321 SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS-KVSEAKELIGLVKE 384 (402)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 384 (402)
+..|..+...+...|++++|+..|++.++.. +.+...|..+..++.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555666666666666666666666553 335555666666666666 46666666666554
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.33 E-value=0.0097 Score=50.47 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=43.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN--SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL--SPNSSVYFTMVY 329 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~ 329 (402)
|...+..+.+.|++++|...|+.+.+...... ...+..+..+|...|++++|...|..+.+.-. ......+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444333444555555555555554421100 12344455555555555555555555554310 011222333334
Q ss_pred HHHccCChHHHHHHHHHHHhC
Q 041936 330 FMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.+...|+.++|..+++++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555443
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.30 E-value=0.0079 Score=46.23 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
++..+...|++++|.++.+.+.... |.+...|..+|.+|...|+...|.++|+.+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444555555555555555443 444555555555555555555555555444
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.071 Score=43.57 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=22.3
Q ss_pred HHhcCCcchHHHHHHHhhcC--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 041936 85 LSEANYFNGISQYLEELKTR--PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDE 138 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 138 (402)
+...|++++|.+.|+.+... ..+........++.++.+.|+++.|...++.+.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555554421 1112222333344444455555555555555443
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.23 E-value=0.0046 Score=53.99 Aligned_cols=133 Identities=10% Similarity=0.047 Sum_probs=91.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHH----HCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCCC-CCH
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMME----RYGM-KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLS----KGMK-PNS 286 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~ 286 (402)
..|..|.+.|.-.|+++.|+...+.-. +.|- ......+..+.+++.-.|+++.|.+.|+.-.. .|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 457778888888899999987765332 2221 12345677788888889999999999887543 2222 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNS-----GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
...-.|.+.|.-..++++|+.++.+-..- ...-....+.+|..+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34556788888888899999888764321 1222456788899999999999999888766543
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.023 Score=47.96 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCChhhH
Q 041936 178 KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE---KYEDVNKVLQMMERYGMKSGVSMY 254 (402)
Q Consensus 178 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 254 (402)
+-|...|-.|...|...|+.+.|..-|....+.. ..+...+..+..++.... ...++..+|+++.... +-++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4455666666666666666666666666665542 334455555554443322 2345666666666544 3444455
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 255 NVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555566666666666666666655
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.0077 Score=52.68 Aligned_cols=133 Identities=15% Similarity=0.104 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEML----SKGMKP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSN----SGL-SPNS 321 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~-~~~~ 321 (402)
..|..|.+.|.-.|+++.|+..-+.-. +-|-+. ....+..+.+++.-.|+++.|.+.|+.-.. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456667777777899999887655422 223221 234678889999999999999998886543 222 2234
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 322 SVYFTMVYFMCKGGDYETALGFCKESIA----K-GWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
.+.-+|...|.-..++++|+.++.+-+. . +..-....+.+|..+|...|..+.|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566778888888889999988765332 1 2233567788899999999999999888776554
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.19 E-value=0.0091 Score=50.65 Aligned_cols=86 Identities=10% Similarity=-0.011 Sum_probs=36.5
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcC
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGV----SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK--PNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~ 300 (402)
.+.|++++|...|+.+.+.. |+. ..+-.+...|...|++++|...|+.+.+.-.. .....+-.+..++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 33445555555555444432 221 23344444444455555555555554433110 01222233333444445
Q ss_pred CHHHHHHHHHHHHh
Q 041936 301 NFEEAKKFYRIMSN 314 (402)
Q Consensus 301 ~~~~a~~~~~~m~~ 314 (402)
+.++|..+|+.+++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554444
No 204
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.089 Score=46.36 Aligned_cols=319 Identities=12% Similarity=-0.022 Sum_probs=182.0
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 041936 54 NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTF 133 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 133 (402)
++..|+..+..+...- .-+...|..-+..+...|+++++.--.+.-... .+.....+...-.++...++..+|.+.+
T Consensus 64 ~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~-kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRL-KDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred hHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheec-CCCccccccchhhhhhhhHHHHHHHHHh
Confidence 5556666665554221 113445666666666677777766554443311 1111112222333333333433443333
Q ss_pred H---------------HhHhCC-CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH--HHhc
Q 041936 134 K---------------EMDEHK-LRHSVGAFNAL-LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA--FCES 194 (402)
Q Consensus 134 ~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~ 194 (402)
+ ...... -+|.-..|..+ ..++.-.|+.++|.++--.+.+.. ....+..++++ +--.
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld----~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD----ATNAEALYVRGLCLYYN 216 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc----cchhHHHHhcccccccc
Confidence 2 222111 12333444444 356778899999988877775532 22334455544 3457
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHH-------------HHHHHHhccCCHHHHHHHHHHHHHCC---CCCChhhHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFG-------------ALVAGFYKEEKYEDVNKVLQMMERYG---MKSGVSMYNVRI 258 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll 258 (402)
++.+.+...|++.+..+ |+...-. .=.+-..+.|++.+|.+.|.+.+... ..++...|....
T Consensus 217 ~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 88899999999988764 4433221 12344578999999999999988743 456677787788
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCC
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP-NSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~ 336 (402)
.+..+.|+..+|+.--+...+. .|. ...|..-..++...++|++|.+-++...+....+ ...++.....++-+..+
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 8888999999999998888765 211 2234444566777899999999999988763322 12333333333333222
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCChHHHHHHHHHHHh
Q 041936 337 YETALGFCKESIAKGWVPNFTTMKSLVTGL---AGASKVSEAKELIGLVKE 384 (402)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~ 384 (402)
.+. ..++--.......+....|..+.-.+ ...|.-.+|+..|.++-+
T Consensus 373 kd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevge 422 (486)
T KOG0550|consen 373 KDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGE 422 (486)
T ss_pred hhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHH
Confidence 211 22222222223355566665543333 234556788888887765
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.17 E-value=0.0092 Score=44.16 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh
Q 041936 139 HKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE 193 (402)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 193 (402)
....|+..+..+++.+|+..|++..|.++++...+.++++-+...|..|++-+..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3456778888888888888888888888888887777777777777777765443
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.15 E-value=0.15 Score=44.64 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
.+...+...+..|+|+.|+++++.-
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444455555555555555555443
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.11 E-value=0.17 Score=44.87 Aligned_cols=166 Identities=10% Similarity=0.056 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHhhHHHHHHHHhc---cCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRKS---IKPNASSFGALVAGFYK---EEKYEDVNKVLQMMERYGMKSGVSMYNV 256 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (402)
+...++-+|....+++..+++++.+.... +.-...+-....-++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556888889999999999887652 11122233344556666 8889999999888655555677888888
Q ss_pred HHHHHHcc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---HHH-HhCCC--
Q 041936 257 RIHSLCKL---------RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNF----EEAKKFY---RIM-SNSGL-- 317 (402)
Q Consensus 257 ll~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~---~~m-~~~~~-- 317 (402)
+.+.|-.. ...++|...|.+.-+. .||..+=..++..+...|.. .+..++- ..+ .++|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 77766431 2356677777666554 24443322222222233321 1222332 111 12222
Q ss_pred -CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 318 -SPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 318 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
..+-..+..++.++.-.|+.++|.+..++|.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 223444566677777777777777777777765
No 208
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.09 E-value=0.0032 Score=41.15 Aligned_cols=58 Identities=24% Similarity=0.183 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHc
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK-DYKEVKRVFIEF 171 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 171 (402)
+..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|+..+++.
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3334444444444444444444444433 333344444444444444 344444444443
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.08 E-value=0.0046 Score=40.91 Aligned_cols=57 Identities=18% Similarity=0.071 Sum_probs=30.3
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 330 FMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
.|.+.+++++|.++++.++..+ +.+...+.....++.+.|++++|.+.|+...+..|
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3445555555555555555543 33445555555555555555555555555555433
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.01 E-value=0.0062 Score=40.27 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=34.4
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
.|.+.+++++|.++++.+...+ |.+...|.....++...|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666666654 455556666666666666666666666666543
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.33 Score=45.95 Aligned_cols=117 Identities=9% Similarity=0.070 Sum_probs=55.2
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIIL 119 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 119 (402)
+.-+.|+.+-...|+|-+.+++++.-+...+...-...|..+...++....|++|.+++..-.. ....+.+
T Consensus 761 drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ec 831 (1189)
T KOG2041|consen 761 DRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIEC 831 (1189)
T ss_pred chhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHH
Confidence 3334455555555555555555544332222222334555555555555555555555554320 1123344
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 170 (402)
+.+..++++-..+-..+ +.+....-.+..++...|.-++|.+.|-+
T Consensus 832 ly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 44444444443333333 33334444555566666666666555543
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.00 E-value=0.23 Score=44.09 Aligned_cols=168 Identities=13% Similarity=0.059 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCC--CCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHhhHH
Q 041936 146 GAFNALLLALTIAKDYKEVKRVFIEFPKTYGI--KPDLDTYNRVIKAFCE---SSDSSSAYSILAEMDRKSIKPNASSFG 220 (402)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (402)
.+...++-+|....+++..+++++.+..-... .-+...-....-++.+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34445556788899999999999999432111 1122222234445556 799999999999966666678899999
Q ss_pred HHHHHHhc---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC----HHHHHHHH---HH-HHHCCC-
Q 041936 221 ALVAGFYK---------EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK----CAEAKALL---DE-MLSKGM- 282 (402)
Q Consensus 221 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~a~~~~---~~-~~~~~~- 282 (402)
.+...|-. ....++|+..|.+.-+.. |+...=-.++..+...|. -.+..++- .. +.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 99987732 123567777776655432 443221112222222332 22333433 11 112332
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 283 --KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 283 --~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
..|-..+.+++.++.-.|+.++|.+..+.|...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 245666788899999999999999999999875
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.00 E-value=0.014 Score=43.24 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS---------------GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
|..++..+|.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5678899999999999999999988875321 2457888889999999999999999999988876
Q ss_pred C-CCCCCHHHHHHHHHHHHcCCC
Q 041936 350 K-GWVPNFTTMKSLVTGLAGASK 371 (402)
Q Consensus 350 ~-~~~~~~~~~~~l~~~~~~~g~ 371 (402)
. +++.+..+|..|++-....-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 5 777788889888877655444
No 214
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.96 E-value=0.037 Score=50.73 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=33.3
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSA 200 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 200 (402)
.+.|+++.|.++.++. .+...|..|.....+.|+++-|++.|.+. +. |..|+-.|.-.|+.+..
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKA-KD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHC-T----------HHHHHHHHHHCT-HHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhh-cC---------ccccHHHHHHhCCHHHH
Confidence 4455555554443321 23445555555555555555555555444 11 33444444445555444
Q ss_pred HHHHHHHHhC
Q 041936 201 YSILAEMDRK 210 (402)
Q Consensus 201 ~~~~~~~~~~ 210 (402)
.++.+.....
T Consensus 393 ~kl~~~a~~~ 402 (443)
T PF04053_consen 393 SKLAKIAEER 402 (443)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 4444444443
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.86 E-value=0.015 Score=44.66 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHhh
Q 041936 148 FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR-----KSIKPNASS 218 (402)
Q Consensus 148 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 218 (402)
...++..+...|++++|.++...+.... +.+...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445555666666666666666665443 44555666666666666666666666665532 255555544
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.84 E-value=0.3 Score=42.92 Aligned_cols=284 Identities=13% Similarity=0.092 Sum_probs=143.6
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 041936 53 SNPEKILEICRAAALTPESHLDRLAFSIAINK--LSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAV 130 (402)
Q Consensus 53 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 130 (402)
||...|.+.-.....- ...|...+..++.+ -.-.|+++.|.+-|+.|...+...-.. ...|.-..-+.|+.+.|.
T Consensus 98 Gda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllG-LRgLyleAqr~GareaAr 174 (531)
T COG3898 98 GDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLG-LRGLYLEAQRLGAREAAR 174 (531)
T ss_pred CchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHh-HHHHHHHHHhcccHHHHH
Confidence 4555565554443311 11233333444333 333577777887777777332211111 222233334567777777
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHH--HHHHHHHHH---hcCChhHHHHHHH
Q 041936 131 RTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDT--YNRVIKAFC---ESSDSSSAYSILA 205 (402)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~---~~~~~~~a~~~~~ 205 (402)
.+-+..-..- +.-...+...+...+..|+++.|+++++.-....-+.++..- -..|+.+-. -..+...|...-.
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 7776665443 344566777788888888888888888776444444555432 222332211 1233444444443
Q ss_pred HHHhCCCCCCHhh-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCC
Q 041936 206 EMDRKSIKPNASS-FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK-GMK 283 (402)
Q Consensus 206 ~~~~~g~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 283 (402)
+..+ +.||..- -.....++.+.|+..++-.+++.+-+....| ..+... .+.+.|+. +..-+++.... .++
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk 325 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALLY--VRARSGDT--ALDRLKRAKKLESLK 325 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHHH--HHhcCCCc--HHHHHHHHHHHHhcC
Confidence 3333 3444322 2233456667777777777777766654333 222222 22344432 22222222211 123
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HccCChHHHHHHHHHHHhC
Q 041936 284 P-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM-CKGGDYETALGFCKESIAK 350 (402)
Q Consensus 284 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~ 350 (402)
| +......+..+-...|++..|..--+.... ..|....|..|.+.- ...||-.++..++.+.++.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3 344555556666666666666555544443 345666666555543 3346666777766666654
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.83 E-value=0.06 Score=41.40 Aligned_cols=86 Identities=9% Similarity=-0.093 Sum_probs=57.1
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHH
Q 041936 262 CKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
...|++++|..+|+-+.-.+.. +..-|..|..++-..+++++|...|......+. -|+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 4567788888887777665333 445556666667777777888777776665433 23444555666777777888887
Q ss_pred HHHHHHHh
Q 041936 342 GFCKESIA 349 (402)
Q Consensus 342 ~~~~~~~~ 349 (402)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77777766
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.79 E-value=0.069 Score=49.01 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=81.3
Q ss_pred HHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 041936 84 KLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKE 163 (402)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 163 (402)
...-.++++++.++.+.-.-.+. .+......++..+.+.|-++.|+++-.+-. .-.....+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPN-IPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhccc-CChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 34445666666555542111111 124446666666667777777766644321 12344556677777
Q ss_pred HHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041936 164 VKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 164 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (402)
|.++.++. .+...|..|.......|+++-|++.|++..+ +..|+-.|.-.|+.+...++.+...
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 76665443 2555677777777777777777776665532 4455555666666666666666655
Q ss_pred HCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 244 RYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
..|- ++....++...|+.++..+++.+
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5441 44444555555666666655543
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.36 Score=46.02 Aligned_cols=250 Identities=12% Similarity=0.151 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCC----CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-----------
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDL----QNERFHAHSIILYGQANMTEHAVRTFKEMDEH----------- 139 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----------- 139 (402)
...|..+....-..|+++.|..+++.=...+.. .+-.-+...+.-+.+.|+.+-...++-.+...
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~ 586 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLR 586 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888889999998888764322111 11122444556677778887777777666542
Q ss_pred CCCCCHHHHHHHHH--------HHHHcCCHHHHHHHH--HHchh---hcCCCCCHHHHHHHHHHHHhcCChh--------
Q 041936 140 KLRHSVGAFNALLL--------ALTIAKDYKEVKRVF--IEFPK---TYGIKPDLDTYNRVIKAFCESSDSS-------- 198 (402)
Q Consensus 140 ~~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~---~~~~~p~~~~~~~li~~~~~~~~~~-------- 198 (402)
..+.....|.-+++ .+...++-.++...| +...+ ..+..|+ .......+.+.....
T Consensus 587 ~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 587 NQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHH
Confidence 11112222222221 011112222222211 11000 0122222 233344444443311
Q ss_pred --HHHHHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 199 --SAYSILAEMDRK-SIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 199 --~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
+-+++.+.+..+ |.....-+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 122223333222 333344456666677788899999988877765 5899999999999999999988777766
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 276 EMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 276 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
... .+.-|.-++.+|.+.|+.++|.+++.+.... .-.+.+|.+.|++.+|.++--+
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 544 2455677899999999999999998765431 1567888899999988876543
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.77 E-value=0.13 Score=37.73 Aligned_cols=138 Identities=17% Similarity=0.222 Sum_probs=83.3
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHH---HHHHHHHHhcCC
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTY---NRVIKAFCESSD 196 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~---~~li~~~~~~~~ 196 (402)
..-.|..++..++..+... +.+..-+|.+|--....-+-+-..++++.+-+-. |...+ ..++.+|...|
T Consensus 12 ~ildG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Dis~C~NlKrVi~C~~~~n- 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DISKCGNLKRVIECYAKRN- 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----GGG-S-THHHHHHHHHTT-
T ss_pred HHHhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhc----CchhhcchHHHHHHHHHhc-
Confidence 3346777777888877765 3456667777766666666677777777664332 33221 22333333332
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
.+...+...+..+...|+-++-.+++..+.+.+ .++....-.+..+|.+.|+..++.+++.+
T Consensus 84 -----------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 84 -----------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp --------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -----------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 244556667777888888888888888887643 67777788888888888888888888888
Q ss_pred HHHCCCC
Q 041936 277 MLSKGMK 283 (402)
Q Consensus 277 ~~~~~~~ 283 (402)
.-+.|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 8888764
No 221
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.75 E-value=0.26 Score=42.64 Aligned_cols=132 Identities=13% Similarity=0.177 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHchhhcCC--CCCHHHHHHHHHHHHhcCCh
Q 041936 126 TEHAVRTFKEMDEHKLRHSVGAFNALLLALTI--AK----DYKEVKRVFIEFPKTYGI--KPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~ 197 (402)
+++.+.+++.|.+.|...+..+|-+....... .. ...+|..+|+.|.+.+.. .++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788888888888887776554433333 22 245688888888665443 2344455555543 33332
Q ss_pred ----hHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041936 198 ----SSAYSILAEMDRKSIKPNA--SSFGALVAGFYKEEK--YEDVNKVLQMMERYGMKSGVSMYNVRIH 259 (402)
Q Consensus 198 ----~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 259 (402)
+.++.+|+.+.+.|+..+. ...+.++..+..... ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4567777777776765443 233334433322222 3467777777777777776666655543
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.27 Score=40.81 Aligned_cols=130 Identities=12% Similarity=0.052 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH-----H
Q 041936 185 NRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI-----H 259 (402)
Q Consensus 185 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~ 259 (402)
+.++..+...|.+.-.+.++++.++...+.++.....+++.-.+.||.+.|...|+...+..-..+..+.+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34445555556666666666666665444555556666666666666666666666555432233333333322 2
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
.|.-.+++..|...+.+....... |....|.-.-+..-.|+...|.+.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233345555555555555544211 3333333333333345555666666655553
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.71 E-value=0.42 Score=42.84 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=66.2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTY-SHFIY 294 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 294 (402)
.+|...++.-.+..-++.|..+|-++.+.+ +.+++..+++++..++. |+..-|..+|+--... -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345555555555555666666666666655 44556666666655543 4555566665543332 2232222 23344
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 295 GFCKDGNFEEAKKFYRIMSNSGLSPN--SSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
-+...++-+.|..+|+..++. +.-+ ...|..+|..=..-|+...+..+=+.|..
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 444556666666666643332 1111 34555666555555666555555554444
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.66 E-value=0.24 Score=46.24 Aligned_cols=178 Identities=20% Similarity=0.174 Sum_probs=119.4
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCC-----hhhHHHHHHHHHc----cCCHHHH
Q 041936 201 YSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSG-----VSMYNVRIHSLCK----LRKCAEA 270 (402)
Q Consensus 201 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~ll~~~~~----~~~~~~a 270 (402)
.-+|.-+..- +|| .+..+++..+-.||-+.+++.+.+..+.+ +.-. .-.|..++..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3444444443 232 35567777788899999999998876633 2111 1234444444443 4577889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 271 KALLDEMLSKGMKPNSVTYSHF-IYGFCKDGNFEEAKKFYRIMSNSG---LSPNSSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
.++++.+.+. -|+...|... .+.+...|++++|++.|++..... .+.....+--+...+.-.+++++|.+.+..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 9999999987 6777666544 455677899999999999866421 112334455666778889999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHcCCCh-------HHHHHHHHHHHhc
Q 041936 347 SIAKGWVPNFTTMKSLVTG-LAGASKV-------SEAKELIGLVKEK 385 (402)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~~~ 385 (402)
+.+.. .-+..+|..+..+ +...|+. ++|.++|.++...
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99864 3345555554433 4567777 8888888887653
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.11 Score=43.38 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSGLS--PNSSVYFTMVYFMCKGGDYETALGFCKESIAK--GWVPNFTTMKSLVT 364 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~ 364 (402)
|+.-+.. .+.|++..|..-|...++.... -....+--|..++...|+++.|..+|..+.+. ..+--+..+--|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4433333 2445555555555555554211 11222333555555566666666655555543 11112244444555
Q ss_pred HHHcCCChHHHHHHHHHHHhcCCCCh
Q 041936 365 GLAGASKVSEAKELIGLVKEKFTKNV 390 (402)
Q Consensus 365 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 390 (402)
...+.|+.++|..+|+++.+++|...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 55566666666666666665555443
No 226
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.62 E-value=0.0078 Score=35.16 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 357 TTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
.++..+..+|.+.|++++|+++|+++.+..|.|...|..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356677888888888888888888888888888888876643
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.61 E-value=0.4 Score=41.37 Aligned_cols=163 Identities=12% Similarity=0.092 Sum_probs=83.6
Q ss_pred hHHHHHHHHhccCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041936 218 SFGALVAGFYKEEKYE---DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIY 294 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 294 (402)
++..++.+|...+..+ +|.++++.+.... +-...++-.-+..+.+.++.+.+.+++.+|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4556667776666654 4445555554432 2234455556666666778888888888887652 112233444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHhCCCCCCHH-hHH-HHH---HHHHccCC------hHHHHHHHHHHHhC-CCCCCHHHH
Q 041936 295 GF---CKDGNFEEAKKFYRIMSNSGLSPNSS-VYF-TMV---YFMCKGGD------YETALGFCKESIAK-GWVPNFTTM 359 (402)
Q Consensus 295 ~~---~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~-~l~---~~~~~~g~------~~~a~~~~~~~~~~-~~~~~~~~~ 359 (402)
.+ ... ....+...+..+....+.|... ... .++ -.....++ .+...++++...+. +.+.+..+-
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 332 3345555555555444444432 111 111 11122221 34444444433222 334444443
Q ss_pred HHHH-------HHHHcCCChHHHHHHHHHHH
Q 041936 360 KSLV-------TGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 360 ~~l~-------~~~~~~g~~~~a~~~~~~~~ 383 (402)
..+. ..+.+.++++.|.+.|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3332 33567899999999998654
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.53 E-value=0.0065 Score=40.81 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=30.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAK----GW-VPN-FTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
+|+.+...|...|++++|+..+++..+. |- .|+ ..++..+..++...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554432 10 111 3344555555556666666666655544
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=96.48 E-value=0.27 Score=37.88 Aligned_cols=89 Identities=7% Similarity=0.005 Sum_probs=64.5
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041936 225 GFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE 304 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 304 (402)
-+...|++++|..+|.-+.-.+ .-+..-+..|..++-..+++++|...|......+.. |...+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3457788888888888777655 344555666777777778888888888877665432 55555567788888888888
Q ss_pred HHHHHHHHHhC
Q 041936 305 AKKFYRIMSNS 315 (402)
Q Consensus 305 a~~~~~~m~~~ 315 (402)
|...|...+..
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 88888877763
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.45 E-value=0.2 Score=45.46 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=87.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHh
Q 041936 43 RAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQ 122 (402)
Q Consensus 43 ~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 122 (402)
+.++...-+..+++.-.+.-+.+....+..+ ..|..+ +-.......++.+++++..+.+.. . +.+
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCA--dAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~ 236 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCA--DAYILL--AEEEASTIVEAEELLRQAVKAGEA----S-------LGK 236 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhh--HHHhhc--ccccccCHHHHHHHHHHHHHHHHH----h-------hch
Confidence 3445555556677766666666653332221 122222 122344567777777776532211 0 011
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041936 123 ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYS 202 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 202 (402)
....+..-..++.+......+-..+-..+..++.+.|+.++|++.+.+|.+.............|+.++...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 00001111111222222223333444556677778888888888888887654222234466778888888888888888
Q ss_pred HHHHHHhCCCCCC-HhhHHHHH
Q 041936 203 ILAEMDRKSIKPN-ASSFGALV 223 (402)
Q Consensus 203 ~~~~~~~~g~~~~-~~~~~~l~ 223 (402)
++.+..+...+.+ ...|+..+
T Consensus 317 lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHhccccCCchHHHHHHHHH
Confidence 8888765443333 23455544
No 231
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.43 E-value=0.54 Score=44.15 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=105.8
Q ss_pred HHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC-CHHHHHH-----HHHHHHhcCChhHHHHHHH
Q 041936 132 TFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP-DLDTYNR-----VIKAFCESSDSSSAYSILA 205 (402)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~-----li~~~~~~~~~~~a~~~~~ 205 (402)
-++++++.|-.|+... +...++-.|.+.+|.++|.+- |... -...|+- +..-+...|+.++-..+.+
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~----G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~R 694 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS----GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIR 694 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc----CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 3455666675566543 345566677777777777654 2111 1111111 1222333333333333222
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH------HHHHCCC---CCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 206 EMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQ------MMERYGM---KSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 206 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
+--+- .-|..-=.+....+...|+.++|..+.- .+.+.+- ..+..+...+...+.+...+..|-++|.+
T Consensus 695 KRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 695 KRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 21110 0011111223344556666666665432 1111111 23344455555666677778888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----------hHHHHHHHHHccCChHHHHHHHH
Q 041936 277 MLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSS-----------VYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 277 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
|-.. ..+++.....++|++|..+-+...+. .||.. -|.-.-.+|.+.|+-.+|.++++
T Consensus 773 ~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 773 MGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred hccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 7532 34677778889999999888776653 33321 13334467888888888888888
Q ss_pred HHHhC
Q 041936 346 ESIAK 350 (402)
Q Consensus 346 ~~~~~ 350 (402)
.+...
T Consensus 842 QLtnn 846 (1081)
T KOG1538|consen 842 QLTNN 846 (1081)
T ss_pred Hhhhh
Confidence 77654
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.018 Score=38.67 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 148 FNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 148 ~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
|+.+..+|...|++++|+..|++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444443
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.43 Score=39.21 Aligned_cols=207 Identities=13% Similarity=0.091 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (402)
...|.....++-...++++|...+.+..+ +...+...| .....++.|.-+.+++.+. +.-+..|+.....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 34455555556666666666665555441 111111111 1122234444444444332 1222334444555
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---C--CCCCHhhHHHHHHHHhcc
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK---S--IKPNASSFGALVAGFYKE 229 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---g--~~~~~~~~~~l~~~~~~~ 229 (402)
|...|.++-|-..+++.-+ ..++-++++|+++|++.... + .+.-...+..+-+.+.+.
T Consensus 101 Y~E~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHhCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 5555555555554444321 12234455555555544321 1 011122344444555555
Q ss_pred CCHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCC
Q 041936 230 EKYEDVNKVLQMMERY----GMKSG-VSMYNVRIHSLCKLRKCAEAKALLDEMLSKG---MKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 230 ~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~ 301 (402)
.++++|-..+.+-... .--++ -..|...|-.+.-..++..|...++.-.+.+ -.-+..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 5555554444332110 00111 1223344444455556666666666533321 111344555566555 3455
Q ss_pred HHHHHHHH
Q 041936 302 FEEAKKFY 309 (402)
Q Consensus 302 ~~~a~~~~ 309 (402)
.+++.+++
T Consensus 243 ~E~~~kvl 250 (308)
T KOG1585|consen 243 IEEIKKVL 250 (308)
T ss_pred HHHHHHHH
Confidence 55544433
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.39 E-value=0.03 Score=46.58 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=35.6
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK----------------DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
+-.-..++.|.+.|+..|..+|+.|++.+-+.. +-+-++.++++| +..|+.||..+-..|+.+
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHH
Confidence 333344566677777777777777776554322 122344444555 444555555555555554
Q ss_pred HHhcC
Q 041936 191 FCESS 195 (402)
Q Consensus 191 ~~~~~ 195 (402)
+.+.+
T Consensus 168 FGr~~ 172 (406)
T KOG3941|consen 168 FGRWN 172 (406)
T ss_pred hcccc
Confidence 44443
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.34 E-value=0.31 Score=37.02 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
.++..+...+.+......++.+...+ ..+...++.++..|++.+ ..+..+.++. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444445555555555555444 244445555555555432 2233333331 012222333455555555
Q ss_pred CHHHHHHHHHHH
Q 041936 301 NFEEAKKFYRIM 312 (402)
Q Consensus 301 ~~~~a~~~~~~m 312 (402)
-++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
No 236
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.34 E-value=0.26 Score=36.17 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
...+......|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444555555555555554432 23444445555555555555555555555555554
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.38 Score=46.43 Aligned_cols=180 Identities=17% Similarity=0.168 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSV--GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
....-+....+...++.|+.+-+.-. ..++. .......+-+.+.|++++|...|-+.+. -+.|. .+|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----EVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----HHHH
Confidence 34455666778888888887766532 12221 2333444556778999999988877652 12332 3566
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAE 269 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 269 (402)
-|.....+.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 677777788888889999999865 66777889999999999998877766554 3311 1124456666777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041936 270 AKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 270 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 313 (402)
|..+-.+... .......++ ...+++++|++++..+.
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7766655432 233333333 46788999998887764
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.27 E-value=0.22 Score=46.41 Aligned_cols=165 Identities=10% Similarity=0.005 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchH------HHHHHHHHHH----hcCCHHHHHHHHHHhHhCCCCCCHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNER------FHAHSIILYG----QANMTEHAVRTFKEMDEHKLRHSVG 146 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~ 146 (402)
.+..+++...-.|+-+.+++.+....+.+.....- .|...+..+. .....+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 45666666677777777777776665433222221 1223333222 245678899999998876 57766
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHHchhhc-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041936 147 AFNAL-LLALTIAKDYKEVKRVFIEFPKTY-GI-KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALV 223 (402)
Q Consensus 147 ~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~-~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (402)
.|... .+.+...|++++|++.|++..... .. +.....+--+.-.+.-.++|++|.+.|..+.+.. .-+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 66544 467788899999999999754311 11 2234455566777888899999999999998864 33445555444
Q ss_pred HH-HhccCCH-------HHHHHHHHHHHH
Q 041936 224 AG-FYKEEKY-------EDVNKVLQMMER 244 (402)
Q Consensus 224 ~~-~~~~~~~-------~~a~~~~~~~~~ 244 (402)
.+ +...|+. ++|.++|.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33 3456766 888888887754
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.26 E-value=0.18 Score=45.56 Aligned_cols=67 Identities=9% Similarity=0.012 Sum_probs=53.7
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 106 DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSV---GAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 106 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
.+.+...+..+..+|.+.|++++|+..|++..+.+ +-+. .+|..+..+|...|+.++|+..+++.++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667788888888999999999999999988764 2223 3588888899999999999999988865
No 240
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=96.26 E-value=0.13 Score=42.94 Aligned_cols=132 Identities=12% Similarity=0.174 Sum_probs=88.9
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCC-----CCCC-------CHHHHHHHHHHHHhcCCcchHHHHHHHhhcC
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTP-----ESHL-------DRLAFSIAINKLSEANYFNGISQYLEELKTR 104 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~-----~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 104 (402)
+....++.|-+.+--..|+..|++.++.....- .-.+ .......-|++++..++|.++....-+--..
T Consensus 33 ~a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~ 112 (309)
T PF07163_consen 33 PAVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV 112 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 344577778888888889999999987653221 0111 1123344577888888888888777666556
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH-----cCCHHHHHHHH
Q 041936 105 PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI-----AKDYKEVKRVF 168 (402)
Q Consensus 105 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 168 (402)
+......+...-|-.|.+.+++..+.++-....+.--..+..-|..++..|.. .|.+++|+++.
T Consensus 113 pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 113 PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 66666777777788888888888888888776653223344446666655544 58888888776
No 241
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.15 E-value=0.46 Score=44.61 Aligned_cols=215 Identities=14% Similarity=0.097 Sum_probs=123.3
Q ss_pred HHHHHHHHHhcCCcch--HHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 78 FSIAINKLSEANYFNG--ISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 78 ~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
++..-.+|.+..+..- ..--++++++++..|+.-. +...++-.|.+.+|-++|.+-=.. |..+.+|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHH
Confidence 4444455555544432 2233455566776666543 344566788899988888763221 2234444
Q ss_pred HHcCCHHHHHHHHHHch---------hhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH------HHHHhCCCCC---CHh
Q 041936 156 TIAKDYKEVKRVFIEFP---------KTYGIKPDLDTYNRVIKAFCESSDSSSAYSIL------AEMDRKSIKP---NAS 217 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~---------~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~------~~~~~~g~~~---~~~ 217 (402)
...+.++.|.+++..-. ++.....+..--.+...++...|+.++|..+. +-+.+.+.+. +..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 44444555544442210 11011111111123445556677777776543 2222222222 344
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----------
Q 041936 218 SFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSV---------- 287 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---------- 287 (402)
+...+..-+.+...+.-|-++|..|-+ ...+++.....+++++|..+-++..+. .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 555555556667778888888888764 346778888999999999988776543 33332
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 288 -TYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 288 -~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
-|...-++|.+.|+-.+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2444557888899999999999887654
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.14 E-value=0.77 Score=39.62 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=11.7
Q ss_pred HHHccCChHHHHHHHHHH
Q 041936 330 FMCKGGDYETALGFCKES 347 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~ 347 (402)
.+.+.++++.|.++|+-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 345567777777777644
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.43 Score=40.43 Aligned_cols=148 Identities=10% Similarity=-0.001 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
.......|++.+|...|+...+.. +.+...--.+..+|...|+.+.|..++..++.+.. .........-|..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence 334566777777777777776654 44455566677777777777777777777743310 1111112223445555555
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCCHH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
..+..++-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+++ -.-|...-..++..+.-.|..+
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 55555555555442 2255566666677777777777776665554432 2344555666676666666333
No 244
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.98 E-value=0.76 Score=38.20 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=39.8
Q ss_pred HhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 041936 192 CESSDSSSAYSILAEMDRKS--IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLC 262 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (402)
.+.|++++|.+.|+.+.... -+-...+--.++-++.+.++++.|....++...........-|...|.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 45667777777777776542 112233445555666677777777777776666432222333444444444
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.95 E-value=0.5 Score=35.85 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=2.5
Q ss_pred hhHHHHH
Q 041936 55 PEKILEI 61 (402)
Q Consensus 55 ~~~al~~ 61 (402)
+..+..+
T Consensus 23 ~~~l~~y 29 (140)
T smart00299 23 LEELIPY 29 (140)
T ss_pred HHHHHHH
Confidence 3333333
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.94 E-value=0.41 Score=35.99 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=45.4
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMK--PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 332 (402)
...+.|++++|.+.|+.+..+-.. -....-..++.+|.+.+++++|...++++++....-...-|...+.+++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 344668888888888888776211 1234455677778888888888888888777533222234444555543
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.94 E-value=0.074 Score=44.41 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC----------------HHHHH
Q 041936 178 KPDLDTYNRVIKAFCES-----SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK----------------YEDVN 236 (402)
Q Consensus 178 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------------~~~a~ 236 (402)
+.|..+|-..+..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+..- -+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44666676666665543 5566666667777777877788888888777644322 13355
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 041936 237 KVLQMMERYGMKSGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (402)
+++++|...|+-||..+-..+++++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 556666666666666666666666655543
No 248
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.93 E-value=0.17 Score=45.70 Aligned_cols=65 Identities=5% Similarity=-0.159 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNE---RFHAHSIILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
+...+..+..+|.+.|++++|+..|+..... .+.+. ..|..+..+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666777777777777777777776532 12222 24666777777777777777777776654
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.22 Score=42.75 Aligned_cols=154 Identities=10% Similarity=-0.073 Sum_probs=100.5
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHH----HHHHHHHhcCC
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYN----RVIKAFCESSD 196 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~~~ 196 (402)
.-.|+..+|-..++++.+.- |.|...++.-=.+|.-.|+.+.....+++++.. ..+|...|. .+.-++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34677777777788777653 677777777778888888888888888777543 244443332 33444556788
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCCHHHHHHH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG---VSMYNVRIHSLCKLRKCAEAKAL 273 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~ 273 (402)
+++|++.-++..+.+ +.|...-.+....+-..|+..++.++..+-....-... ..-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888888877764 45666777777777788888888877765543221000 11122223344556788888888
Q ss_pred HHHHH
Q 041936 274 LDEML 278 (402)
Q Consensus 274 ~~~~~ 278 (402)
|+.-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 87544
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.29 Score=43.28 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=43.2
Q ss_pred HHHHhcCCcchHHHHHHHhhc-----CCCCC---------chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 041936 83 NKLSEANYFNGISQYLEELKT-----RPDLQ---------NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAF 148 (402)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~-----~~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 148 (402)
+.+.+.|++..|..-|+.... .+..+ ....+..+..+|.+.+++.+|++.-+..+..+ +.|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 345666777777666666441 01110 01223344444555555555555555554444 4444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHch
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~ 172 (402)
-.-..++...|+++.|...|+++.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH
Confidence 444455555555555555555543
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.79 E-value=1.3 Score=39.56 Aligned_cols=52 Identities=15% Similarity=0.076 Sum_probs=31.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 172 (402)
+.+..+.|+++...+........ .++...+..+... ..++.+++...++...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 45667778888755555554432 2345555555433 7788888877777663
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.93 Score=37.33 Aligned_cols=207 Identities=17% Similarity=0.186 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..|.....+|....++++|...+.+..+- ...+...|+. ....+.|.-+.+++.+- +--+..|+--...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl---sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL---SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh---HHHHHHHHHHHHH
Confidence 45666677888899999998887776531 1222222221 22345555566665321 2223446666778
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH---CC--CCCChhhHHHHHHHHHccC
Q 041936 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER---YG--MKSGVSMYNVRIHSLCKLR 265 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~ll~~~~~~~ 265 (402)
|..+|.++.|-..+++.-+. ...-++++|+++|++... .+ ...-...|...-+.+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 88899888887777755332 122344555555544322 10 0111233444556677777
Q ss_pred CHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHccCCh
Q 041936 266 KCAEAKALLDEMLSK----GMKPNS-VTYSHFIYGFCKDGNFEEAKKFYRIMSNSG---LSPNSSVYFTMVYFMCKGGDY 337 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~g~~ 337 (402)
.+++|-..+.+-... .-.++. ..|...|-.+....++..|.+.++.--+-+ -.-+..+...|+.+| ..||.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 777776666543321 111222 345556666777788999999988855442 122456777788776 67788
Q ss_pred HHHHHHHH
Q 041936 338 ETALGFCK 345 (402)
Q Consensus 338 ~~a~~~~~ 345 (402)
+++.+++.
T Consensus 244 E~~~kvl~ 251 (308)
T KOG1585|consen 244 EEIKKVLS 251 (308)
T ss_pred HHHHHHHc
Confidence 87776653
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=2.2 Score=41.58 Aligned_cols=121 Identities=10% Similarity=0.041 Sum_probs=77.9
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 121 (402)
++.-+..+..-.-++.|+.+.+.....+.. -......-.+.+-+.|++++|...|-+-...-.+ . .+|.-|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~--~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s----~Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDT--LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--S----EVIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--H----HHHHHhc
Confidence 444555666555666666665443322111 1122333344566789999998888665522211 1 3566677
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
...++..-..+++.+.+.| -.+...-..|+.+|.+.++.++-.+..+..
T Consensus 409 daq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred CHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 7778888888888888888 466667778999999999888877776655
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.73 E-value=0.18 Score=42.14 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=41.2
Q ss_pred hcCCHHHHHHHHHHhHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHHhcCChh
Q 041936 122 QANMTEHAVRTFKEMDEHKL--RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL-DTYNRVIKAFCESSDSS 198 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~ 198 (402)
+.|++..|...|....+... .-....+-.|..++...|+++.|..+|..+.+.++-.|.. ...--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44445555555555544320 1112233345555555555555555555554443222221 33444444444555555
Q ss_pred HHHHHHHHHHhC
Q 041936 199 SAYSILAEMDRK 210 (402)
Q Consensus 199 ~a~~~~~~~~~~ 210 (402)
+|..+|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.61 E-value=2.4 Score=43.04 Aligned_cols=102 Identities=14% Similarity=0.200 Sum_probs=54.4
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHH
Q 041936 226 FYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSV--TYSHFIYGFCKDGNFE 303 (402)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~ 303 (402)
+...+.+++|--.|+..-+ ..-.+.+|..+|++.+|..+..++.... |.. +-..|+.-+...++.-
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccch
Confidence 3445555555555554432 1234556666666666666666554321 211 1245666666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
+|-++..+.... | ...+..|++...+++|..+....
T Consensus 1017 eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 777776666542 1 22333455555666666655444
No 256
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.61 E-value=2.6 Score=41.49 Aligned_cols=229 Identities=10% Similarity=0.000 Sum_probs=125.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH-------HHHHHHHH-HHHHcCCHHHHHHHHHHchhhc---CCCCCHHH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSV-------GAFNALLL-ALTIAKDYKEVKRVFIEFPKTY---GIKPDLDT 183 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~ 183 (402)
.-+.......++++|..+..++...-..|+. ..++.+-. .....|++++|.++-+...... ...+....
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 3344556788999999998887643212221 23444432 3345688899888877765431 12334566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH-----HHHhccCC--HHHHHHHHHHHHHCC---CC---CC
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALV-----AGFYKEEK--YEDVNKVLQMMERYG---MK---SG 250 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~---~~---~~ 250 (402)
+..+..+..-.|++++|..+.++..+..-..+...+.... ..+...|. +.+.+..+....... .+ +-
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 7777788888999999999888776543233433333222 23455663 333333343332211 11 12
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----C
Q 041936 251 VSMYNVRIHSLCKLRKCAEAKALLDEMLS----KGMKPNSVTY--SHFIYGFCKDGNFEEAKKFYRIMSNSGLSP----N 320 (402)
Q Consensus 251 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~----~ 320 (402)
..++..++.++.+ .+.+..-...-.+ ....|-...+ ..++......|+.++|...+.++......+ +
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 2344445555554 3333332222222 2222222222 367788888999999999999887653333 2
Q ss_pred HHhHHHHHH--HHHccCChHHHHHHHHH
Q 041936 321 SSVYFTMVY--FMCKGGDYETALGFCKE 346 (402)
Q Consensus 321 ~~~~~~l~~--~~~~~g~~~~a~~~~~~ 346 (402)
...-...+. .-...|+...+.....+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222222 23457888888777765
No 257
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.27 Score=43.43 Aligned_cols=127 Identities=14% Similarity=0.062 Sum_probs=89.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSK-----GMKP---------NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSS 322 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 322 (402)
-.+.|.+.|++..|..-|++.... +..+ -..++..+.-+|.+.+++..|+...+.....+. +|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cchh
Confidence 347888999999999999987653 2222 112467778888899999999999998888743 4677
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhc
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKV-SEAKELIGLVKEK 385 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 385 (402)
..-.-..+|...|+++.|+..|+++.+.. +-|...-..++..-.+.... +...++|..|..+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77777888889999999999999998864 33444444444444443333 3446777777765
No 258
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.49 E-value=1.1 Score=36.65 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=103.3
Q ss_pred cCCHHHHHHHHHHhHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 123 ANMTEHAVRTFKEMDEHKLR-HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
.+....+...+......... .....+......+...+.+..+...+...............+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555555555443311 12455555666666666666666666655321011333344555555555566666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHH-HHhccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 202 SILAEMDRKSIKPNASSFGALVA-GFYKEEKYEDVNKVLQMMERYGM--KSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 202 ~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
+.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 6666665543221 111222222 45566666666666665543110 0122222223333444555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 279 SKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 279 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
..........+..+...+...++++.+...+......... ....+..+...+...+..+.+...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4411112344444555555555555555555555543111 122222222223344445555555554444
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=0.89 Score=35.29 Aligned_cols=131 Identities=18% Similarity=0.099 Sum_probs=62.4
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchH-H--HHHH
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTP-ESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNER-F--HAHS 116 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~~~l 116 (402)
.+..++++ .+.+.+++|+.-|....... +.-| ....-.......+.|+...|...|+++-.....|... - -..-
T Consensus 61 ~flaAL~l-A~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALKL-AQENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 33445666666666554332 1111 1112222334455566666666666665322222111 0 1111
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
...+...|.++......+-+...+-+.....-..|.-+-.+.|++..|.++|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 223455666666666666555444333344444555555666666666666666643
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=95.42 E-value=1.1 Score=40.72 Aligned_cols=116 Identities=7% Similarity=-0.015 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhc---------CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 041936 54 NPEKILEICRAAALTPESHLD-RLAFSIAINKLSEA---------NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQA 123 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 123 (402)
+.++|+.+|..+.......|+ ...|..+..++... .+..+|.+.-+... .-.+.|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv-eld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS-DITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhh
Confidence 445677788777644344443 23333333222111 11223333333333 22333444444444444445
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
++++.|..+|++....+ +-...+|......+.-.|+.++|.+.+++.
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555443 233334444444444455555555555553
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=1.5 Score=37.28 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=101.5
Q ss_pred HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 041936 152 LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK 231 (402)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 231 (402)
.......|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..+...--.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 345667889999999998886543 334556778889999999999999999988655322223333334555555555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041936 232 YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK--GMKPNSVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
..+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+... |.. |...-..++..+.-.|.-+.+..
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHH
Confidence 55555555555442 346677777888888999999999888777654 433 55566677777777674444333
No 262
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.36 E-value=2 Score=41.16 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=104.1
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHhccC--
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKA-FCESSDSSSAYSILAEMDR-------KSIKPNASSFGALVAGFYKEE-- 230 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~l~~~~~~~~-- 230 (402)
...+..+++...+...+.+-...-.....+ +....|.+.|+.+|+.+.+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456777777774432111111111122223 4466788888888888766 44 3345566666666533
Q ss_pred ---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCH
Q 041936 231 ---KYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK-LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFC----KDGNF 302 (402)
Q Consensus 231 ---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~ 302 (402)
+.+.|..++...-+.| .|+...+-..+..... ..+...|.++|......|.. ..+-.+..+|. ...+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCH
Confidence 5677888888888777 4665554444433333 34677888888888887753 22222222221 23467
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 303 EEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 303 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
+.|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 88888888888887 3332222233333333 66666666655555544
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.32 E-value=0.069 Score=31.07 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNA 150 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 150 (402)
+..+...|.+.|++++|.++|++..+.. +-|...+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 4445555566666666666666655543 344444433
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.20 E-value=0.63 Score=40.56 Aligned_cols=54 Identities=15% Similarity=-0.063 Sum_probs=24.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-----CCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041936 187 VIKAFCESSDSSSAYSILAEMDRKSI-----KPNASSFGALVAGFYKEEKYEDVNKVLQ 240 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (402)
+..++...+.++++++.|+...+-.. -....++..+...|.+..|+++|.-+..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence 33444444455555555554433210 1112345555555555555555554433
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.85 Score=39.39 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=102.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHH----HHHHHHccCCHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNV----RIHSLCKLRKCA 268 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~ 268 (402)
..|+..+|-..++++++. .+.|...+.-.-.+|.-.|+.+.-...++++.... .+|...|.. +.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 467777887888888776 56677788888888888888888888888887653 344433333 334455778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHhHHHHHHHHHccCChHHHHHHHH
Q 041936 269 EAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS---PNSSVYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
+|++.-++..+.+. .|...-.++...+...|+..++.++..+-...--. .-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 88888888777643 36666667777777788888888877665543111 111223333444566688888888887
Q ss_pred HHH
Q 041936 346 ESI 348 (402)
Q Consensus 346 ~~~ 348 (402)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.03 E-value=0.72 Score=34.73 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=47.3
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 041936 81 AINKLSEANYFNGISQYLEELKTRP--DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI 157 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (402)
-.....+.|++++|.+.|+.+..+- .+-....-..++.+|.+.+++++|...++..++......-..|-..+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3444566778888888888887321 1223455566777888888888888888887776522222334444444443
No 267
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.02 E-value=1.3 Score=34.54 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=11.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
+..+++.+...|++-+|.++.+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 33444444555555555555444
No 268
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.95 E-value=2.7 Score=38.00 Aligned_cols=278 Identities=14% Similarity=0.125 Sum_probs=128.1
Q ss_pred HHhcCCcchHHHHHHHhhcCC----CCCchHHH-HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH--HHH
Q 041936 85 LSEANYFNGISQYLEELKTRP----DLQNERFH-AHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA--LTI 157 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 157 (402)
+-+.++++++.++|.++.... .....+++ +.++++|. .++.+.-...+..+.+.. | ...|-.+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 455678888888887766221 12222333 33444443 344555555555544321 2 2223333332 346
Q ss_pred cCCHHHHHHHHHHchhhc-CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHhhHH
Q 041936 158 AKDYKEVKRVFIEFPKTY-GIKP------------DLDTYNRVIKAFCESSDSSSAYSILAEMDRKS----IKPNASSFG 220 (402)
Q Consensus 158 ~~~~~~a~~~~~~~~~~~-~~~p------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~ 220 (402)
.+.+.+|.+.+.....+- +..| |-..=+..+.++...|.+.++..+++++...= ...+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 677777777776653220 1111 11122445666777788887777777665542 235667777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMER---YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFC 297 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 297 (402)
.++-.+++. .|-++.+ ..+-|+ |--++-.|.+. ...++.-.-..+.|....+..++....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 655555432 2222221 112222 22222233221 000110000112344444444444433
Q ss_pred hcC--CHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHccCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHcCC
Q 041936 298 KDG--NFEEAKKFYRIMSNSGLSPNSS-VYFTMVYFMCKGGDYETALGFCKESIAKGWV----PNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 298 ~~~--~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g 370 (402)
... ...--.+++..-...-+.|+.. ....+...+.. +.+++..+.+.+....+. -=..++..++...++.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1122222222223333445432 22334444433 555555555544433211 12346677777777888
Q ss_pred ChHHHHHHHHHHHhc
Q 041936 371 KVSEAKELIGLVKEK 385 (402)
Q Consensus 371 ~~~~a~~~~~~~~~~ 385 (402)
+..+|.+.+.-+.-.
T Consensus 313 ~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 313 QTEEAKQYLALLKIL 327 (549)
T ss_pred hHHHHHHHHHHHHhc
Confidence 888888877766553
No 269
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.83 E-value=0.57 Score=32.27 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESI 348 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (402)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555554444
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.74 E-value=0.48 Score=40.31 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHhhH
Q 041936 145 VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR-----KSIKPNASSF 219 (402)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 219 (402)
..++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3456677777777777777777777776543 55667777777777777777777777776654 4777777776
Q ss_pred HHHHHHH
Q 041936 220 GALVAGF 226 (402)
Q Consensus 220 ~~l~~~~ 226 (402)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 6666653
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.59 E-value=0.47 Score=40.32 Aligned_cols=80 Identities=6% Similarity=0.158 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCChhhHHH
Q 041936 182 DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER-----YGMKSGVSMYNV 256 (402)
Q Consensus 182 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 256 (402)
.++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 467788889999999999999999999885 66888999999999999999999999998765 688898888888
Q ss_pred HHHHHH
Q 041936 257 RIHSLC 262 (402)
Q Consensus 257 ll~~~~ 262 (402)
......
T Consensus 233 y~~~~~ 238 (280)
T COG3629 233 YEEILR 238 (280)
T ss_pred HHHHhc
Confidence 777743
No 272
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.51 E-value=3.9 Score=37.69 Aligned_cols=166 Identities=8% Similarity=0.076 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 041936 179 PDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI 258 (402)
Q Consensus 179 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 258 (402)
.|.....+++..+.++..+.-.+.+..+|..-| .+...|..++++|... ..++-..+++++.+..+ .|++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344455555666666666666666666665543 2445555566655555 44555556665555432 2333333333
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHH
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMK-----PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS-GLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~ 332 (402)
..|.+ ++...+..+|.++..+=++ .-...|..+... -..+.+....+...+... |..--...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 5555555555555443111 001133333321 123445555555544433 22223334444445555
Q ss_pred ccCChHHHHHHHHHHHhCC
Q 041936 333 KGGDYETALGFCKESIAKG 351 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~ 351 (402)
...++++|.+++....+.+
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 5566666666666555543
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.41 E-value=3.1 Score=36.17 Aligned_cols=133 Identities=11% Similarity=0.125 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc--cC----CHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHccCCH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYK--EE----KYEDVNKVLQMMERYGM---KSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 267 (402)
+++...+++.|.+.|+.-+..+|-+....... .. ...++.++|+.|++... .++-..+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888887777666554333332 22 24577888888887542 2334445555443 33333
Q ss_pred ----HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 268 ----AEAKALLDEMLSKGMKPNS--VTYSHFIYGFCKDGN--FEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 268 ----~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
+.+..+|+.+.+.|...+. .....++..+..... ..++..+++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 4567778888887776543 233333333322222 447888888999988888877776665443
No 274
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.36 E-value=0.98 Score=33.23 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=24.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 192 CESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
...|+.+.|++.|.+.+.. .+.....||.-..++.-.|+.++|++=+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555444433 123344455444555445555555444444443
No 275
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.33 E-value=0.35 Score=33.66 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 305 AKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 305 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
..+-++.+....+.|++....+.+++|.+.+++..|.++++-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555544443
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.32 E-value=2.4 Score=37.22 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=125.8
Q ss_pred cCCHHHHHHHHHHhHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 123 ANMTEHAVRTFKEMDEH--KLRHSVGAFNALLLALTIAKDYKEVKRVF----IEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
..+.++|+..+.+-..+ +......+|..+..+.++.|.+++++..- +-..+...-..-...|-.+.+++-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555443321 00111234445555666666665544321 1111100001122345556666666666
Q ss_pred hhHHHHHHHHHHhC-CCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHccCCH
Q 041936 197 SSSAYSILAEMDRK-SIKPN---ASSFGALVAGFYKEEKYEDVNKVLQMMERYG-----MKSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 197 ~~~a~~~~~~~~~~-g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~ 267 (402)
+.+++.+-..-... |..|. -....++..+....+.++++++.|+...+.. .-....+|..+-..|.+..|+
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 66666665544332 22221 1234456677777888999999998776522 112346788899999999999
Q ss_pred HHHHHHHHHHHHC----CCCCCHH-HHH-----HHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHhHHHHHHHHH
Q 041936 268 AEAKALLDEMLSK----GMKPNSV-TYS-----HFIYGFCKDGNFEEAKKFYRIMSN----SGLSPN-SSVYFTMVYFMC 332 (402)
Q Consensus 268 ~~a~~~~~~~~~~----~~~p~~~-~~~-----~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~ 332 (402)
++|.-+..+..+. ++. |.. .|. .+.-++-..|....|.+.-++..+ .|-++. ......+.+.|.
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9988877765542 322 221 222 344556677887777777766543 343322 234456777888
Q ss_pred ccCChHHHHHHHHHHH
Q 041936 333 KGGDYETALGFCKESI 348 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~ 348 (402)
..|+.+.|+.-|+.+.
T Consensus 258 ~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAM 273 (518)
T ss_pred hcccHhHHHHHHHHHH
Confidence 8999998887777654
No 277
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.27 E-value=2.8 Score=35.71 Aligned_cols=184 Identities=11% Similarity=0.083 Sum_probs=111.1
Q ss_pred cchHHHHHHHhcCC---ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhc-CCCCCchHHHHH
Q 041936 40 DKTRAALTLLKSES---NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKT-RPDLQNERFHAH 115 (402)
Q Consensus 40 ~~~~~~l~~l~~~~---~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 115 (402)
..+..-+..=.++| --+....+++-...+....... -|..++ .+...+.+|+.+++.... .....+..+...
T Consensus 94 ~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~-~Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evisl 169 (292)
T PF13929_consen 94 RFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSF-NYWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISL 169 (292)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccch-HHHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHH
Confidence 33443333444444 2344555555543333222221 155444 234456777777775432 234566677777
Q ss_pred HHHHHHh-cC-CHHHHHHHHHHhHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH
Q 041936 116 SIILYGQ-AN-MTEHAVRTFKEMDE-HKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC 192 (402)
Q Consensus 116 li~~~~~-~~-~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 192 (402)
+++.... .+ ....-.++.+.+.. .+-.++..+...++..+++.+++.+-.++++......+..-|...|..+|+...
T Consensus 170 LL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~ 249 (292)
T PF13929_consen 170 LLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIV 249 (292)
T ss_pred HHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHH
Confidence 7665554 22 22223333344433 234678888888999999999999999999887655455667788999999999
Q ss_pred hcCChhHHHHHHHH-----HHhCCCCCCHhhHHHHHHHHh
Q 041936 193 ESSDSSSAYSILAE-----MDRKSIKPNASSFGALVAGFY 227 (402)
Q Consensus 193 ~~~~~~~a~~~~~~-----~~~~g~~~~~~~~~~l~~~~~ 227 (402)
..|+..-..++.++ +.+.|+..+...-..+-..+.
T Consensus 250 ~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 250 ESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 99998888777764 345566666666665555443
No 278
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.16 E-value=1.7 Score=32.08 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=48.1
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH--HHHHHHHHHHHhcCC
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL--DTYNRVIKAFCESSD 196 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~ 196 (402)
+.+..|+.+.|++.|.+....- +.....||.-..++.-.|+.++|.+-+++..+-.|-+--. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666666666666655443 4455566666666666666666666665554433322111 112222334445566
Q ss_pred hhHHHHHHHHHHhCC
Q 041936 197 SSSAYSILAEMDRKS 211 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g 211 (402)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666665555544
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.11 E-value=0.94 Score=35.97 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHhC---CCCCCHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN--SSVYFTMVYFMCKGGDYETALGFCKESIAK---GWVPNFTTMKSL 362 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l 362 (402)
.+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|+.....+++..+...+.++... +-..+...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666665533322 234455566666666666666666555432 111111111111
Q ss_pred HH--HHHcCCChHHHHHHHHHHHhc
Q 041936 363 VT--GLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 363 ~~--~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.. ++...+++.+|.+.|-+....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCcC
Confidence 11 233456777777776665443
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.10 E-value=3 Score=34.80 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPN---SSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
+.+-|.+.|.+..|..-+++|.+. ..-+ ...+-.+..+|...|-.++|...-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 445566666666666666666655 1111 233344455566666666655544433
No 281
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.46 Score=40.53 Aligned_cols=105 Identities=11% Similarity=0.069 Sum_probs=75.9
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041936 245 YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK---GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS 321 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 321 (402)
.|.+....+...++..-....+++.+...+-++... ...|+...+ ..++.+. .-++++++.++..=++-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 445566666777777777778888888888887754 112222222 2333333 34677888888888888999999
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 322 SVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
.+++.+|+.+.+.+++.+|.++...|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887764
No 282
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.74 E-value=3.9 Score=34.87 Aligned_cols=132 Identities=7% Similarity=0.061 Sum_probs=70.4
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES--SDSSSAYSILAEMDRK-SIKPNASSFGALVAGFYKEEKYEDVNK 237 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (402)
+.+|..+|+..--+..+--|..+...+++..... .....-.++.+-+... |-.++..+...++..++..+++.+..+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555555553211112344555555555554441 1222333333333322 345566666677777777777777777
Q ss_pred HHHHHHHC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHH-----HHHCCCCCCHHHHHHH
Q 041936 238 VLQMMERY-GMKSGVSMYNVRIHSLCKLRKCAEAKALLDE-----MLSKGMKPNSVTYSHF 292 (402)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~p~~~~~~~l 292 (402)
+++..... +...|...|..+|......|+..-...+.++ +++.++..+...-..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 77666554 4455666677777777777777666666654 2334444444443333
No 283
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.71 E-value=3.2 Score=33.85 Aligned_cols=200 Identities=17% Similarity=0.069 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH-HHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEH-KLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL-DTYNRVI 188 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 188 (402)
.........+...+++..+...+...... ........+......+...++...+...+...... .++. .......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 136 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL---DPDPDLAEALLA 136 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC---CCCcchHHHHHH
Confidence 44445555566666666666666655431 12344445555555555666666666666655321 1111 1222222
Q ss_pred H-HHHhcCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHcc
Q 041936 189 K-AFCESSDSSSAYSILAEMDRKSI--KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS-GVSMYNVRIHSLCKL 264 (402)
Q Consensus 189 ~-~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~ 264 (402)
. .+...|+++.+...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHc
Confidence 2 45566666666666666544211 0122233333333455566666666666665543 12 345555555566666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 265 RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
++.+.+...+......... ....+..+...+...+..+.+...+......
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666554211 1223333333333445566666666655553
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.69 E-value=2.9 Score=38.39 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLS-PNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
..+..++-+.|+.++|++.+.+|.+.... -+......|+.++...+.+.++..++.+.-+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34566666778888888888888764222 23446667788888888888888888776443
No 285
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=1.3 Score=37.94 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=91.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH----------hCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCChh
Q 041936 186 RVIKAFCESSDSSSAYSILAEMD----------RKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG---MKSGVS 252 (402)
Q Consensus 186 ~li~~~~~~~~~~~a~~~~~~~~----------~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 252 (402)
.|.++|.....|+.-....-.+- ..|.+....+...++..-....+++.++..+-++.... ..++..
T Consensus 24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~ 103 (418)
T KOG4570|consen 24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT 103 (418)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc
Confidence 45666776767765444332222 23556666777777777777888999998888776532 223332
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
.+ ++++.+ ..-++++++.++..=+.-|+-||..+++.+|+.+.+.+++.+|..+...|....
T Consensus 104 ~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 104 IH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HH-HHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22 233333 335788999999998999999999999999999999999999999988887653
No 286
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.58 E-value=5.9 Score=36.44 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=62.7
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH-HHHhcCCHHHHHHH
Q 041936 54 NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII-LYGQANMTEHAVRT 132 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~ 132 (402)
-+.+...+++.+..+ ...|+..|..-+..+-+.+.+.+...+|.+|. ...+.++.+|-.... -|-...+++.|..+
T Consensus 86 i~~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l-~~Hp~~~dLWI~aA~wefe~n~ni~saRal 162 (568)
T KOG2396|consen 86 IPNRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAML-AKHPNNPDLWIYAAKWEFEINLNIESARAL 162 (568)
T ss_pred HHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH-HhCCCCchhHHhhhhhHHhhccchHHHHHH
Confidence 345667777777654 33488899999999999898999999999998 234444444443333 34444458999999
Q ss_pred HHHhHhCCCCCCHHHHH
Q 041936 133 FKEMDEHKLRHSVGAFN 149 (402)
Q Consensus 133 ~~~~~~~~~~~~~~~~~ 149 (402)
|..-.+.+ +.++..|-
T Consensus 163 flrgLR~n-pdsp~Lw~ 178 (568)
T KOG2396|consen 163 FLRGLRFN-PDSPKLWK 178 (568)
T ss_pred HHHHhhcC-CCChHHHH
Confidence 98877765 44444443
No 287
>PRK11906 transcriptional regulator; Provisional
Probab=93.32 E-value=6.4 Score=36.05 Aligned_cols=147 Identities=10% Similarity=0.020 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHHc---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 232 YEDVNKVLQMMERY-GMKSG-VSMYNVRIHSLCK---------LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 232 ~~~a~~~~~~~~~~-~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
.+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.++-++..+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 45666777776621 12333 3333333332221 23445666777777766433 6666666666667777
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChHHHHHH
Q 041936 301 NFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKG-WVPNFTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
+.+.|..+|++.... .|| ..+|......+.-.|+.++|.+.+++..+.. .+.-.......+..|+.. ..++|+.+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 788888888888774 344 3444444455566788888888888866652 111223333344455554 45666666
Q ss_pred HHHH
Q 041936 379 IGLV 382 (402)
Q Consensus 379 ~~~~ 382 (402)
+-+-
T Consensus 430 ~~~~ 433 (458)
T PRK11906 430 YYKE 433 (458)
T ss_pred Hhhc
Confidence 5443
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.25 E-value=11 Score=38.62 Aligned_cols=86 Identities=13% Similarity=0.052 Sum_probs=53.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
|.+..+-+.....+++|.-.|+..-+. ...+.+|...|+|.+|..+..++....-+ -..+-..|+.-+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHH
Confidence 333344444556666666666654321 34567788888888888888777542110 01122567777788
Q ss_pred cCChHHHHHHHHHHHh
Q 041936 334 GGDYETALGFCKESIA 349 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~ 349 (402)
.+++-+|-++..+...
T Consensus 1012 ~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cccchhHHHHHHHHhc
Confidence 8888888888877765
No 289
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.16 E-value=7.7 Score=36.52 Aligned_cols=118 Identities=8% Similarity=-0.043 Sum_probs=80.8
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHH-HhcCCHHHHHH
Q 041936 53 SNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILY-GQANMTEHAVR 131 (402)
Q Consensus 53 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~A~~ 131 (402)
.+.+.+...+..+....+. -.-.|......=.+.|..+.+.++|+... .+.+.+...|...+..+ ...|+.+...+
T Consensus 59 ~~~~~~r~~y~~fL~kyPl--~~gyW~kfA~~E~klg~~~~s~~Vfergv-~aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPL--CYGYWKKFADYEYKLGNAENSVKVFERGV-QAIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred hHHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3444445555555433222 22345566666677889999999999988 56677777777666533 35678888888
Q ss_pred HHHHhHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 132 TFKEMDEH-KL-RHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 132 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
.|+..... |. -.+...|...|..-...+++.....+|+.+++
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 88887653 21 23456788888888888999999999999864
No 290
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.12 E-value=17 Score=40.36 Aligned_cols=314 Identities=9% Similarity=0.025 Sum_probs=167.1
Q ss_pred cCCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 51 SESNPEKILEICRAAALTP-ESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
+.+.+.+|+..++.-...+ ........|..+-..|+..++++...-+...-. .+..++ .-|......|+++.|
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEHEASGNWADA 1468 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHHHhhccHHHH
Confidence 4567778888777632111 111223345555558999999999887776422 122333 344457788999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHH
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV-IKAFCESSDSSSAYSILAEMD 208 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~ 208 (402)
...|+.+.+.+ ++...+++.++......|.++.++-..+-.... ..+....++++ ..+--+.++++.......
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 99999999886 566788888888888888888888766655322 23333333332 344467777777766655
Q ss_pred hCCCCCCHhhHHHH--HHHHhcc--CCHHHHHHHHHHHHHCCCCC---------ChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 209 RKSIKPNASSFGAL--VAGFYKE--EKYEDVNKVLQMMERYGMKS---------GVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 209 ~~g~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
+. +..+|... +....+. .+.-.-.+..+.+.+.-+.| =...|..++....-.. -....+
T Consensus 1543 ~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l~~~~~ 1614 (2382)
T KOG0890|consen 1543 DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----LENSIE 1614 (2382)
T ss_pred cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----HHHHHH
Confidence 11 22233222 2222222 22222222333333221111 0123444443332211 111111
Q ss_pred HHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCC-----CHHhHHHHHHHHHccCChHHHHHH
Q 041936 276 EMLSKGMKPNS------VTYSHFIYGFCKDGNFEEAKKFYR-IMSNSGLSP-----NSSVYFTMVYFMCKGGDYETALGF 343 (402)
Q Consensus 276 ~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~ 343 (402)
... +..++. .-|..-+..-....+..+-+--++ .+......| -..+|-...+.....|+++.|...
T Consensus 1615 ~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1615 ELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred Hhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 111 112221 112222221111111111111111 111111111 246788888888889999999988
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 344 CKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
+-++.+.+ . +..+--....+...|+...|+.++++..+...|+
T Consensus 1693 ll~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1693 LLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 87777765 3 3445556677888999999999999988764444
No 291
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.00 E-value=6.9 Score=35.58 Aligned_cols=122 Identities=14% Similarity=0.130 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHH--HHHc
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFI----YGFCK---DGNFEEAKKFYRIMSNSGLSPN----SSVYFTMVY--FMCK 333 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~----~~~~~---~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~--~~~~ 333 (402)
-++|+++++.+.+-. .-|..+-|.+. ..|.+ ...+.+-.++-+-+.+.|+.|- ...-|.+.+ .+..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 556666666665531 11333322222 12221 2234444444445556677653 333444443 3456
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHH
Q 041936 334 GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNE 395 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 395 (402)
.|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|.+++..+ |||..+|++
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~ds 530 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMRDS 530 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhHHH
Confidence 8888888765555544 5889999999999999999999999998764 457666664
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.74 E-value=9.8 Score=36.62 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHh
Q 041936 372 VSEAKELIGLVKE 384 (402)
Q Consensus 372 ~~~a~~~~~~~~~ 384 (402)
+..|.++++...+
T Consensus 525 ~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 525 LHLAKRYYDQASE 537 (552)
T ss_pred hHHHHHHHHHHHh
Confidence 4556666665554
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.58 E-value=3.8 Score=31.57 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=20.1
Q ss_pred cCCcchHHHHHHHhh-cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 88 ANYFNGISQYLEELK-TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 88 ~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
.++.+++..++..+. -++..+...++...+ +...|++.+|.++|+.+.
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELE 71 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHh
Confidence 344444444444444 222222333333222 444445555555555443
No 294
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.57 E-value=1.6 Score=34.87 Aligned_cols=91 Identities=20% Similarity=0.097 Sum_probs=60.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMKPN-----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
+-+.+.|++++|..-|...++. +++. ...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3466788888888888888876 2221 234555566777888888888888877775422 12222233456777
Q ss_pred cCChHHHHHHHHHHHhCC
Q 041936 334 GGDYETALGFCKESIAKG 351 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~ 351 (402)
...+++|+.-|+.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 888888888888888763
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.44 E-value=3.3 Score=32.88 Aligned_cols=62 Identities=5% Similarity=-0.060 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPD--LQNERFHAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
..+..+...+.+.|+.+.|.+.+..+..... .....++..+|+.....+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555666666666666666666666653222 2223445556666666666666666655544
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.28 E-value=2.8 Score=31.79 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=32.1
Q ss_pred hcCCcchHHHHHHHhh-cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 041936 87 EANYFNGISQYLEELK-TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHK 140 (402)
Q Consensus 87 ~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 140 (402)
..++.+++..++..|. -++..+...++...+ +...|++++|.++|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 3567777777777666 334444444444444 667777777777777776543
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.21 E-value=0.37 Score=26.47 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 041936 185 NRVIKAFCESSDSSSAYSILAE 206 (402)
Q Consensus 185 ~~li~~~~~~~~~~~a~~~~~~ 206 (402)
..|...|.+.|++++|+++|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 298
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.18 E-value=4.6 Score=31.54 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVS-MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSV-TYSHF-- 292 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l-- 292 (402)
..|...++ +.+.++.++|+.-|..+.+.|...-.. .-..........|+...|...|+++-.....|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 345556666666666666654221110 11111223445566666666666665543333222 11111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.-.+...|.++......+-+...+-......-..|.-+-.+.|++.+|.++|..+.+.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1123345556555555555444433333333445555555666666666666655543
No 299
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.11 E-value=0.37 Score=26.46 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677788888888888888888744
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.05 E-value=0.56 Score=25.04 Aligned_cols=29 Identities=17% Similarity=-0.074 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEKF 386 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (402)
.+..+...+.+.|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 44555566666666666666666666543
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.03 E-value=4.6 Score=31.18 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=63.5
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFN-ALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
..-.+.++.+++..++..+.-. .|...... .-...+...|++.+|.++|+++... .|.......|+..|.....
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcC
Confidence 3445677888888888888764 34333222 2344567888999999999988543 3444444555555555444
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNK 237 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (402)
-..-..+-+++.+.+-.|+. - .++..+....+...|..
T Consensus 93 D~~Wr~~A~evle~~~d~~a--~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDA--R-ALVRALLARADLEPAHE 130 (160)
T ss_pred ChHHHHHHHHHHhcCCChHH--H-HHHHHHHHhccccchhh
Confidence 34444444556666533333 2 33444444444444443
No 302
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.67 E-value=15 Score=36.47 Aligned_cols=226 Identities=12% Similarity=0.030 Sum_probs=122.6
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCCCH-------HHHHHHH-HHHHhcCChhHHHHHHHHHHhC----CCCCCHhhHHHH
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKPDL-------DTYNRVI-KAFCESSDSSSAYSILAEMDRK----SIKPNASSFGAL 222 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li-~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~l 222 (402)
.....++++|..++.+.....+ .|+. ..++.+- ......|++++|.++.+..... -..+....+..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4557889999999988844322 2221 1233332 2334578899999998877654 123345567777
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCChhhH---HHHH--HHHHccCCH--HHHHHHHHHHHHC--CCCC----CHHHH
Q 041936 223 VAGFYKEEKYEDVNKVLQMMERYGMKSGVSMY---NVRI--HSLCKLRKC--AEAKALLDEMLSK--GMKP----NSVTY 289 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll--~~~~~~~~~--~~a~~~~~~~~~~--~~~p----~~~~~ 289 (402)
..+..-.|++++|..+.....+..-.-++..+ ..+. ..+...|.. .+....|...... +-.| -..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 88888899999999988877654222333333 2222 234455632 2223333333222 1111 22344
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHhH--HHHHHHHHccCChHHHHHHHHHHHhCCC----CCCHHHHHHH
Q 041936 290 SHFIYGFCKD-GNFEEAKKFYRIMSNSGLSPNSSVY--FTMVYFMCKGGDYETALGFCKESIAKGW----VPNFTTMKSL 362 (402)
Q Consensus 290 ~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l 362 (402)
..+..++.+. +...++..-+.-.......|-...+ ..|+......|+.++|...+.++..... .++..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4455555442 1222232333222222222222222 3677888889999999999988876522 2222222222
Q ss_pred HHH--HHcCCChHHHHHHHHH
Q 041936 363 VTG--LAGASKVSEAKELIGL 381 (402)
Q Consensus 363 ~~~--~~~~g~~~~a~~~~~~ 381 (402)
+.. ....|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 3457888887777665
No 303
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.53 E-value=12 Score=34.81 Aligned_cols=181 Identities=9% Similarity=0.039 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGA 221 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (402)
+.|....-+++..+..+..+.-++-+..+|..- ..+-..|..++.+|..+ ..+.-..+++++.+..+. |.+.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 567778888999999999998899999988643 44777899999999998 678888999998887543 4444444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKS-----GVSMYNVRIHSLCKLRKCAEAKALLDEMLSK-GMKPNSVTYSHFIYG 295 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 295 (402)
|...| ..++.+.+...|.++...-++. -...|..+.... ..+.+....+..++... |..--.+.+.-+-..
T Consensus 138 La~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 44444 4588899999999887654431 123566555432 35777888888877754 444456667777788
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 296 FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
|....++++|++++..+.+..-+ |...-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 88999999999999999887533 555555555544
No 304
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.32 E-value=0.31 Score=26.45 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
|-+...|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555555544
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.31 E-value=2.8 Score=33.68 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc--CCCCCHHHHHHHHHHHHhcCCh
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY--GIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~~~~ 197 (402)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+...-. +-.+|+..+..|+..+.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444454 778888888888775555555555555554 778899999888775432 2367888999999999999999
Q ss_pred hHHHH
Q 041936 198 SSAYS 202 (402)
Q Consensus 198 ~~a~~ 202 (402)
+.|.-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 88753
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.19 E-value=0.27 Score=26.66 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=17.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 041936 345 KESIAKGWVPNFTTMKSLVTGLAGASKVSEAK 376 (402)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 376 (402)
++.++.. +-+...|..+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444433 445666666666666666666654
No 307
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.19 E-value=16 Score=35.75 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHH-hcCCcchHHHHHHHhhcCCCC---Cch--HHHHHHHHHHHhcCCHHHHHHHHHHhHhCC----CCCC
Q 041936 75 RLAFSIAINKLS-EANYFNGISQYLEELKTRPDL---QNE--RFHAHSIILYGQANMTEHAVRTFKEMDEHK----LRHS 144 (402)
Q Consensus 75 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~---~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~ 144 (402)
..++-.+...+. ...+++.|+..+++....... .+. .....++..+.+.+... |...+++..+.- ..+-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 345555666665 678999999999987622211 111 12234456666666665 998888866532 1122
Q ss_pred HHHHHHH-HHHHHHcCCHHHHHHHHHHchhhcC--CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhCC--------
Q 041936 145 VGAFNAL-LLALTIAKDYKEVKRVFIEFPKTYG--IKPDLDTYNRVIKAFC--ESSDSSSAYSILAEMDRKS-------- 211 (402)
Q Consensus 145 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~g-------- 211 (402)
...+..+ +..+...++...|.+.++.+..... ..|-...+..++.+.. ..+..+++.+.++++....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2333333 3333344799999999988865443 2333444445555544 3455677777777764322
Q ss_pred -CCCCHhhHHHHHHHH--hccCCHHHHHHHHHHH
Q 041936 212 -IKPNASSFGALVAGF--YKEEKYEDVNKVLQMM 242 (402)
Q Consensus 212 -~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 242 (402)
..|-..+|..+++.+ ...|+++.+...++++
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 133455677776655 4567777777666555
No 308
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.90 E-value=9.4 Score=32.62 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=47.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHhH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS-----GLSPNSSVY 324 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~ 324 (402)
++.....|..+|.+.+|.++.++....+ +.+...+-.+++.+...||--.+.+-++++.+. |+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4455667778888888888888877653 336667777888888888877777766665432 666555443
No 309
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.52 E-value=1.4 Score=38.22 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=34.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
+-|.+.|.+++|++.|...+.. .| +.+++..-..+|.+...+..|+.-....+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5566777777777777766554 34 666666667777777777666655554443
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.32 E-value=6.5 Score=29.86 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=33.3
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAF-NALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
...++++++..+++.|.-. .|+..-. ..-...+...|++++|.++|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3477888888888887654 2332221 12234466788888888888888543
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.31 E-value=0.73 Score=24.67 Aligned_cols=28 Identities=18% Similarity=-0.003 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+|..+..+|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4445555555555555555555555543
No 312
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=12 Score=35.37 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=22.1
Q ss_pred HcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 157 IAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4455555555544331 3344555555555555555555555444
No 313
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.96 E-value=0.62 Score=24.61 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=18.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 361 SLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 361 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
.+..++.+.|++++|.+.|+++.+.+|.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455666677777777777777766543
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.81 E-value=4.2 Score=32.68 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK---GWVPNFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 375 (402)
.|.+.|-.+...+.--++.....+...|. ..+.+++..++-+..+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444544443333444334433333 34455555555554443 2244555555555555555555544
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.75 E-value=5.4 Score=28.01 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 339 TALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
+..+-+..+...++.|++....+.+++|.+.+++..|.++|+-++.+..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 44445555555555666666666666666666666666666666555444333454444
No 316
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.51 E-value=9.2 Score=36.14 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
...+.++..+.+.|..++|+++- ++... -.....+.|+++.|.++..+. .+..-|..|.++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHH
Confidence 34566666677777776665531 11111 112245677777777766553 3445677788888
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDV 235 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 235 (402)
...+++..|.+.|.... -|..|+-.+...|+-+....+-....+.|. .|....+|...|+++++
T Consensus 677 l~~~~l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 677 LSAGELPLASECFLRAR----------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred hhcccchhHHHHHHhhc----------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence 88888888887776652 155666666777777766666666666652 22333455667888887
Q ss_pred HHHHHHH
Q 041936 236 NKVLQMM 242 (402)
Q Consensus 236 ~~~~~~~ 242 (402)
.+++..-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 7776544
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.40 E-value=3.8 Score=28.40 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 313 (402)
|.-++.+-++.+......|++....+.+++|-+.+|+..|.++++-.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334455555555555555666666666666666666666666666555
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.00 E-value=0.18 Score=38.42 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=52.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 336 (402)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 55666667777777777777776654556667777777777777666666666511 11222445666667777
Q ss_pred hHHHHHHHHHH
Q 041936 337 YETALGFCKES 347 (402)
Q Consensus 337 ~~~a~~~~~~~ 347 (402)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77777766654
No 319
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=88.91 E-value=15 Score=31.98 Aligned_cols=97 Identities=14% Similarity=0.055 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHhHHHHHHH-HHccCChHHHHHHHHHHHhCCCCCC----HH
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPNSSVYFTMVYF-MCKGGDYETALGFCKESIAKGWVPN----FT 357 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~----~~ 357 (402)
..+.....-|++.||.+.|++.+.+..++ |.+.|...+.+-+.. |....-+.+-.+..+.+.+.|..-+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34555666777777777777766655443 566665544333222 2222223344444444555543222 22
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+|..+ .+....++.+|..+|-+....
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHccc
Confidence 33333 233445677777766665543
No 320
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.77 E-value=3 Score=30.45 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+..+-++.+..-.+.|++.....-+++|.+.+|+..|.++|+-.+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444444444555666666666666666666666666666555443
No 321
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.53 E-value=10 Score=29.65 Aligned_cols=136 Identities=7% Similarity=0.140 Sum_probs=78.7
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+.+..+.+.+++|+...+..+++.+.+.|++.....++.- ++-+|.......+-.+. +....+.++=-+|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 45556666778888888888888888888887766665532 33445444433332222 222334444334433
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 210 KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
+ + ...+..++..+...|++-+|.++.+.... .+......++.+..+.+|...-..+|+-..+.
T Consensus 87 R-L---~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 87 R-L---GTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred H-h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 0 11355667777788888888877766532 22222345666666666666655555555443
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.68 E-value=1.5 Score=24.65 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 357 TTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777888888888888888887765
No 323
>PRK09687 putative lyase; Provisional
Probab=87.51 E-value=18 Score=31.27 Aligned_cols=17 Identities=6% Similarity=-0.375 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHcCC
Q 041936 144 SVGAFNALLLALTIAKD 160 (402)
Q Consensus 144 ~~~~~~~l~~~~~~~~~ 160 (402)
+...-...+.++...|+
T Consensus 67 d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 67 NPIERDIGADILSQLGM 83 (280)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33444444444555544
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.96 E-value=0.34 Score=36.91 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=22.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQ 240 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (402)
..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444443333334444444444444444444444433
No 325
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.84 E-value=2.4 Score=22.55 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=6.3
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 041936 152 LLALTIAKDYKEVKRVFI 169 (402)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~ 169 (402)
..+|...|++++|+..|+
T Consensus 8 g~~~~~~~~~~~A~~~~~ 25 (34)
T PF00515_consen 8 GNAYFQLGDYEEALEYYQ 25 (34)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHH
Confidence 333333333333333333
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.79 E-value=1.9 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+++.|...|...|++++|.+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.70 E-value=12 Score=34.45 Aligned_cols=87 Identities=8% Similarity=-0.019 Sum_probs=41.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 041936 297 CKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAK 376 (402)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 376 (402)
...|+++.+...+...... +.....+..++++...+.|++++|...-+-|....+. +++.........-..|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 4455565555555544332 2223344555555555566666666555555544322 3333332222333445555555
Q ss_pred HHHHHHHhc
Q 041936 377 ELIGLVKEK 385 (402)
Q Consensus 377 ~~~~~~~~~ 385 (402)
-.|+++...
T Consensus 412 ~~wk~~~~~ 420 (831)
T PRK15180 412 HYWKRVLLL 420 (831)
T ss_pred HHHHHHhcc
Confidence 555555443
No 328
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.63 E-value=39 Score=34.23 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=17.5
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041936 261 LCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFC 297 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 297 (402)
|......+-+..+++.+....-.++....+.++..|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 3444455555555555554433344444444444443
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.44 E-value=20 Score=30.75 Aligned_cols=57 Identities=11% Similarity=-0.021 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+.....|..+|.+.+|.++.+...+-. +.+...+..++..+...||--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334455666666666666665554322 334455556666666666655555555544
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.86 E-value=2 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555666666666666665554
No 331
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.63 E-value=3 Score=22.04 Aligned_cols=18 Identities=22% Similarity=0.229 Sum_probs=6.5
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 041936 153 LALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~ 170 (402)
.++...|++++|++.|++
T Consensus 9 ~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 9 QAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 333333333333333333
No 332
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.56 E-value=34 Score=32.51 Aligned_cols=310 Identities=9% Similarity=0.066 Sum_probs=183.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 041936 70 ESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFN 149 (402)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (402)
....+-..+..++.--....+.+.+..++..+. ...|.-...|......=.+.|..+.+..+|++-.+ +++.+...|.
T Consensus 40 ~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL-~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~ 117 (577)
T KOG1258|consen 40 NDSLDFDAWTTLIQENDSIEDVDALREVYDIFL-SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWL 117 (577)
T ss_pred cchhcccchHHHHhccCchhHHHHHHHHHHHHH-hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHH
Confidence 344455667777766666666677777787777 44566677788888888889999999999999875 4577777787
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHchhhcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-
Q 041936 150 ALLLALT-IAKDYKEVKRVFIEFPKTYGIK-PDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGF- 226 (402)
Q Consensus 150 ~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~- 226 (402)
..+..+. ..|+.+...+.|+....-.|.. .....|...|.--..++++.....+|++.++.- ..-|+....-|
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~ 193 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFK 193 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHH
Confidence 7665544 4678888888888886655543 234567778887788899999999999998752 22233222222
Q ss_pred --hcc------CCHHHHHHHHHHHHHC---C-CCCChhhHHHHHHHHHc-cCCHHH------------------------
Q 041936 227 --YKE------EKYEDVNKVLQMMERY---G-MKSGVSMYNVRIHSLCK-LRKCAE------------------------ 269 (402)
Q Consensus 227 --~~~------~~~~~a~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~-~~~~~~------------------------ 269 (402)
... ...+++.++-...... . ..+.......-+.--.. .+..++
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~ 273 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEE 273 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 222 2344444444333321 0 01111111111111110 011111
Q ss_pred HHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHH
Q 041936 270 AKALLDEMLSK---GMKP----NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALG 342 (402)
Q Consensus 270 a~~~~~~~~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 342 (402)
..-.|+.-... .+.| +..+|..-+.--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+-|..
T Consensus 274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~ 352 (577)
T KOG1258|consen 274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANN 352 (577)
T ss_pred HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHH
Confidence 11112221111 1222 4557888888888889999888888887642 11123445555555555688888877
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 041936 343 FCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKF 386 (402)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (402)
++....+--++-.+.+--.-....-..|+++.|..+++.+.+..
T Consensus 353 ~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 353 VLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 77666655433333332222223344678888888888888765
No 333
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.11 E-value=23 Score=30.21 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
+...-|.+++..+++.+++...-+--+.--+........-|-.|.+.+++..+.++-....+..+ .-+...|..++..|
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELY 163 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHH
Confidence 44455888999999999888776654422223334455556678899999998888888765422 22334477777766
Q ss_pred Hh-----cCChhHHHHHH
Q 041936 192 CE-----SSDSSSAYSIL 204 (402)
Q Consensus 192 ~~-----~~~~~~a~~~~ 204 (402)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 65 58888888876
No 334
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.81 E-value=23 Score=29.99 Aligned_cols=48 Identities=6% Similarity=-0.014 Sum_probs=21.7
Q ss_pred CcchHHHHHHHhhcCCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 90 YFNGISQYLEELKTRPDLQNE---RFHAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
..++|+.-|++.......... .....++..+.+.|++++....|.+|.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 455555555554422111111 223334555555555555555555543
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.69 E-value=17 Score=33.55 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=21.2
Q ss_pred HHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 365 GLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 365 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
.|...|++-.|.+.|.+....+..|...|--|.++|
T Consensus 344 ~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345556666666666666665666666665555443
No 336
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.62 E-value=43 Score=32.96 Aligned_cols=324 Identities=8% Similarity=0.024 Sum_probs=175.7
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCC-CCchHHHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPD-LQNERFHAHSI 117 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li 117 (402)
+..+..+.+.+. .|++..+.++...+... +.. .-..|..+...+. ...+++....++. .+. +....+-...+
T Consensus 34 r~~f~~A~~a~~-~g~~~~~~~~~~~l~d~-pL~-~yl~y~~L~~~l~-~~~~~ev~~Fl~~---~~~~P~~~~Lr~~~l 106 (644)
T PRK11619 34 RQRYQQIKQAWD-NRQMDVVEQLMPTLKDY-PLY-PYLEYRQLTQDLM-NQPAVQVTNFIRA---NPTLPPARSLQSRFV 106 (644)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHhccCC-CcH-hHHHHHHHHhccc-cCCHHHHHHHHHH---CCCCchHHHHHHHHH
Confidence 456777777666 55788887776655322 221 2223333322221 2245555555555 333 34445555556
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
..+.+.++++..++.+.. .+.+...-.....+....|+.++|......+-... ......++.++..+.+.|..
T Consensus 107 ~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 107 NELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHcCCC
Confidence 667788888877773322 14566666677888889999888877776663332 33456799999999987766
Q ss_pred hHH--HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH---------CCCCCChhhHHHHHHHHH--cc
Q 041936 198 SSA--YSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER---------YGMKSGVSMYNVRIHSLC--KL 264 (402)
Q Consensus 198 ~~a--~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~ll~~~~--~~ 264 (402)
... .+-++.+...| +...-..+...+. .+.....+.+..+.. ..++++...-..++.++. ..
T Consensus 180 t~~d~w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar 254 (644)
T PRK11619 180 DPLAYLERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVAR 254 (644)
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHH
Confidence 543 33344444443 2222222332221 111111111111110 111223211221222222 34
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHH
Q 041936 265 RKCAEAKALLDEMLSKG-MKPNS--VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 265 ~~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
.+.+.|..++....... ..+.. ..+..+.......+..+++...+....... .+......-+..-...++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 56788999998875442 22222 233444433334333566777776654332 24444555555556888999988
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 342 GFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
..+..|-... .-...-.--+.+++...|+.++|...|+.+..
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888875532 22334444566777778999999999998754
No 337
>PRK09687 putative lyase; Provisional
Probab=84.47 E-value=26 Score=30.30 Aligned_cols=235 Identities=11% Similarity=0.102 Sum_probs=148.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCHh
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS----SSAYSILAEMDRKSIKPNAS 217 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~g~~~~~~ 217 (402)
.++.......+.++...|..+ +...+..+.+ .+|...-...+.++.+.|+. +++...+..+... .++..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 566667777777787777643 3334444433 34666666677777777764 4677777776443 45667
Q ss_pred hHHHHHHHHhccCCH-----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041936 218 SFGALVAGFYKEEKY-----EDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHF 292 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 292 (402)
+-...+.+++..+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+.+. +|...-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHH
Confidence 776777777665432 233344433333 3466666777888888887 4566666666653 354555555
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 041936 293 IYGFCKDG-NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASK 371 (402)
Q Consensus 293 ~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (402)
+.++...+ +...+...+..+.. .++..+-...+.++.+.|+. .+...+-+..+.+ + .....+.++.+.|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence 66666543 24466676666664 35777788888899998884 5666666666543 2 23467888899998
Q ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHhcCC
Q 041936 372 VSEAKELIGLVKEKFTKNVDTWNEIEAGLP 401 (402)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 401 (402)
. +|...+..+.+..+ |...-...+.+|.
T Consensus 251 ~-~a~p~L~~l~~~~~-d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 K-TLLPVLDTLLYKFD-DNEIITKAIDKLK 278 (280)
T ss_pred H-hHHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence 5 68888888887544 6665555555543
No 338
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.99 E-value=22 Score=29.11 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
+.+++-+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.--|+++-|.+-+...
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHH
Confidence 45555555566666677777777766665542222222232222 22345566665555444
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.87 E-value=46 Score=32.64 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh---cC
Q 041936 225 GFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGM-KPNSVTYSHFIYGFCK---DG 300 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~---~~ 300 (402)
.+.-.|.++.|.+.+-+ ..+...+.+.+...+..|.-.+-.+... ..+..... .|...-+..||..|.+ ..
T Consensus 267 ~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 34455667777766655 1122344444444443332222111111 22221100 1111446667777765 45
Q ss_pred CHHHHHHHHHHHHhC
Q 041936 301 NFEEAKKFYRIMSNS 315 (402)
Q Consensus 301 ~~~~a~~~~~~m~~~ 315 (402)
+..+|.+++--+...
T Consensus 342 d~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 342 DPREALQYLYLICLF 356 (613)
T ss_dssp -HHHHHHHHHGGGGS
T ss_pred CHHHHHHHHHHHHHc
Confidence 677777777766654
No 340
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.85 E-value=3.2 Score=21.51 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 370 SKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 370 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
|+.+.|..+|+++....+.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46677888888888777777777776653
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.34 E-value=13 Score=30.33 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=56.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHH
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS--GLSPNSSVYFTMVYF 330 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~ 330 (402)
|.+..+..+.+.+.+.+++...++-++... .|..+-..+++.+|-.|+|++|..-++..-.. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445667778888999999999888777632 25666777899999999999999888776654 223345667666654
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.22 E-value=10 Score=30.97 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK--GWVPNFTTMKSLVTG 365 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 365 (402)
|.+..+..+.+.+...+++.....-++... -|...-..++..+|-.|++++|..-++-.-+. ...+-..+|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345566777888999999998888777632 25667778889999999999998877665543 234556677777664
Q ss_pred H
Q 041936 366 L 366 (402)
Q Consensus 366 ~ 366 (402)
-
T Consensus 82 e 82 (273)
T COG4455 82 E 82 (273)
T ss_pred H
Confidence 3
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.81 E-value=56 Score=32.24 Aligned_cols=106 Identities=9% Similarity=0.072 Sum_probs=59.4
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN 124 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 124 (402)
-++-+-..+.+++|++..+......+...-.......|..+...|++++|-...-.|.. .+..-|...+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccc
Confidence 44555566777888877665543332222345677778888888888888877777762 22334444454555555
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI 157 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (402)
+...... -+....-..+...|..++..+..
T Consensus 438 ~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 4433222 22222112345567766666655
No 344
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.64 E-value=15 Score=29.55 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHh
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSV-----GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCE 193 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 193 (402)
+...|++++|..-|...++.- ++.. ..|..-..++.+.+.++.|+.-..+.++- .|+ .....--..+|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHHHh
Confidence 556788888888888777653 3222 23444445677778888877766665432 332 1222223456777
Q ss_pred cCChhHHHHHHHHHHhC
Q 041936 194 SSDSSSAYSILAEMDRK 210 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~ 210 (402)
...+++|+.=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 78888888888888775
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.49 E-value=2.8 Score=21.89 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=7.5
Q ss_pred HHHHcCCHHHHHHHHHHc
Q 041936 154 ALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~ 171 (402)
++.+.|++++|.+.|+++
T Consensus 9 ~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 333344444444444444
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.00 E-value=39 Score=29.90 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=49.6
Q ss_pred chHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 041936 92 NGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI---AKDYKEVKRVF 168 (402)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 168 (402)
+.-+.++++..+. .+.+..+....+..+.+..+.++..+-++++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 4455666666644 55667777777777777777787788888877664 4466677766655443 22355555555
Q ss_pred HHc
Q 041936 169 IEF 171 (402)
Q Consensus 169 ~~~ 171 (402)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 444
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.94 E-value=47 Score=30.77 Aligned_cols=120 Identities=8% Similarity=0.018 Sum_probs=70.1
Q ss_pred hcCCHHHHHH-HHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 041936 122 QANMTEHAVR-TFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSA 200 (402)
Q Consensus 122 ~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 200 (402)
..|+.-.|-+ ++..+... +.++.............|+++.+...+....+ -+-....+...+++...+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 4455554433 44444332 22222233333445667888888777766632 2234556677778888888888888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 041936 201 YSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG 246 (402)
Q Consensus 201 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (402)
...-..|....+. +.+.........-..|-++++...|+++...+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8887777776554 44444433333445566777777777776554
No 348
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.57 E-value=5.7 Score=20.94 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
+..+...|...|++++|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444555555555555555544
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.33 E-value=2.6 Score=20.99 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=11.0
Q ss_pred HHHHHHHcCCChHHHHHHHH
Q 041936 361 SLVTGLAGASKVSEAKELIG 380 (402)
Q Consensus 361 ~l~~~~~~~g~~~~a~~~~~ 380 (402)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34555555666666655543
No 350
>PRK10941 hypothetical protein; Provisional
Probab=80.29 E-value=35 Score=29.27 Aligned_cols=75 Identities=15% Similarity=0.012 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHH
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKS-IKPNASSFGALVAG 225 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~ 225 (402)
+.+-.+|.+.++++.|.++.+.+..-. +.|..-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 344455566666666666666554321 2233334444445556666666666555554431 23334444433333
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.92 E-value=4.7 Score=23.40 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=10.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 041936 187 VIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444444444444444444443
No 352
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.89 E-value=30 Score=27.83 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=22.5
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 225 GFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
.....|.+|+|+++++.....+. .......-.+.+...|+-++|..-|....+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444555555555544443221 1111122223444445555555555554444
No 353
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.47 E-value=66 Score=31.56 Aligned_cols=195 Identities=10% Similarity=0.009 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhh-cCCCCCch--HHHHHHHHHHH-hcCCHHHHHHHHHHhHhCCCCCCHH--
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELK-TRPDLQNE--RFHAHSIILYG-QANMTEHAVRTFKEMDEHKLRHSVG-- 146 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~--~~~~~li~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-- 146 (402)
.+...|..+|.. |++.++.+. ....+|.. .++..+...+. ...+++.|...+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345566666643 555566666 22233322 34444555444 7889999999999875433233322
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHchhhcCC---CCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCH
Q 041936 147 ---AFNALLLALTIAKDYKEVKRVFIEFPKTYGI---KPDLDTYNRV-IKAFCESSDSSSAYSILAEMDRKS---IKPNA 216 (402)
Q Consensus 147 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~g---~~~~~ 216 (402)
+-..++..+.+.+... |...+++.++...- .+-...|..+ +..+...+++..|.+.++.+...- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2235567777776665 88888887654322 1222334444 333334489999999998876542 23444
Q ss_pred hhHHHHHHHHh--ccCCHHHHHHHHHHHHHCC---------CCCChhhHHHHHHHH--HccCCHHHHHHHHHHH
Q 041936 217 SSFGALVAGFY--KEEKYEDVNKVLQMMERYG---------MKSGVSMYNVRIHSL--CKLRKCAEAKALLDEM 277 (402)
Q Consensus 217 ~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~ 277 (402)
.++..++.+.. +.+..+++.+.++++.... -.|...+|..+++.+ ...|+++.+...++++
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555543 4566777777777664322 134566777777654 4567766666665554
No 354
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.95 E-value=35 Score=28.05 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSGVSMYNVRIH 259 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~ 259 (402)
+..||.+.--+...|+++.|.+.|+...+....-+-...|.-+ ++.-.|+++-|.+-+...-+.. -.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 3456777777777777777777777776653222222222222 3344567776666555544432 122122222222
Q ss_pred HHHccCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCC------CCCHHhHHHHHHHH
Q 041936 260 SLCKLRKCAEAKALL-DEMLSKGMKPNSVTYSHFIYGF-CKDGNFEEAKKFYRIMSNSGL------SPNSSVYFTMVYFM 331 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~------~~~~~~~~~l~~~~ 331 (402)
.+.-++.+|..-+ ++.... |..-|...|-.| ...=..+ .+++++....- ..-..||--+.+.+
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 2333555554333 333322 444444433322 2111111 22222222110 01135677777888
Q ss_pred HccCChHHHHHHHHHHHhCC
Q 041936 332 CKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~ 351 (402)
...|+.++|..+|+-.+...
T Consensus 248 l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 248 LSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccccHHHHHHHHHHHHHHh
Confidence 88888888888887776654
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.39 E-value=5.3 Score=23.16 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=5.8
Q ss_pred HHccCChHHHHHHHHH
Q 041936 331 MCKGGDYETALGFCKE 346 (402)
Q Consensus 331 ~~~~g~~~~a~~~~~~ 346 (402)
|...|+.+.|.+++++
T Consensus 9 yie~Gd~e~Ar~lL~e 24 (44)
T TIGR03504 9 YIEMGDLEGARELLEE 24 (44)
T ss_pred HHHcCChHHHHHHHHH
Confidence 3333333333333333
No 356
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.36 E-value=15 Score=29.66 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 353 VPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
.|++.+|..++.++...|+.++|.++.+++...+|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56666666666666667777777666666666555
No 357
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=78.16 E-value=33 Score=27.43 Aligned_cols=56 Identities=5% Similarity=-0.015 Sum_probs=39.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCC--------------CCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 041936 326 TMVYFMCKGGDYETALGFCKESIAKG--------------WVPNFTTMKSLVTGLAGASKVSEAKELIGL 381 (402)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (402)
+++..|.+..++.++.++++.|.+.. ..+.-...+.....|.+.|..|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 45556666677777777777665431 233445667778889999999999999884
No 358
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.05 E-value=84 Score=31.99 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=22.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFY 227 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (402)
.|+.....+-+..+++.+....-..+....+.++..|.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34555666667777776665544445555555555554
No 359
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.53 E-value=55 Score=29.63 Aligned_cols=62 Identities=8% Similarity=-0.002 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRKS--IKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
.+.-+...|...|+++.|++.|-+..+-- .+.....|-.+|..-.-.|+|..+.....+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45556666666777777777666644321 111233444455555555666666666655544
No 360
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.25 E-value=51 Score=28.54 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 041936 269 EAKALLDEMLSKGMKPNSVTYSHFIYGFCK----DGNFEEAKKFYRIMSNSGL 317 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~ 317 (402)
.|...|.+....+ +......+...|.. ..+.++|..+|....+.|.
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5666666665554 22233333333322 3356666677766666654
No 361
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.13 E-value=39 Score=27.18 Aligned_cols=88 Identities=8% Similarity=0.024 Sum_probs=50.6
Q ss_pred HHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 041936 153 LALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR-----VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFY 227 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (402)
..+...+++++|+.-++..... +.| ..+.. |.+.....|.+|+|+..++...+.+. .......-.+++.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 4566677777777777655321 222 22222 33455666777777777766655432 2222334456667
Q ss_pred ccCCHHHHHHHHHHHHHCC
Q 041936 228 KEEKYEDVNKVLQMMERYG 246 (402)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~ 246 (402)
..|+-++|..-|+...+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777776654
No 362
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=75.45 E-value=57 Score=28.72 Aligned_cols=80 Identities=13% Similarity=0.018 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhCCC----CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 041936 198 SSAYSILAEMDRKSI----KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKAL 273 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 273 (402)
+.|.+.|++....+. ..+......++....+.|+.+....+++.... ..+......++.+++-..+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 345555555544311 22333444444444555554444444443333 23344445555555555555555555
Q ss_pred HHHHHHC
Q 041936 274 LDEMLSK 280 (402)
Q Consensus 274 ~~~~~~~ 280 (402)
++.....
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 5555543
No 363
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.34 E-value=34 Score=26.06 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhhcC----CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHhhHHHH
Q 041936 148 FNALLLALTIAKDYKEVKRVFIEFPKTYG----IKPDLDTYNRVIKAFCESSD-SSSAYSILAEMDRKSIKPNASSFGAL 222 (402)
Q Consensus 148 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l 222 (402)
.|.++.-....+++...+.+++.+..-.. -..+...|++++.+.....- --.+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555556666666666655521100 01123345555555544333 22344455555555555555555555
Q ss_pred HHHHhcc
Q 041936 223 VAGFYKE 229 (402)
Q Consensus 223 ~~~~~~~ 229 (402)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 5555443
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.15 E-value=6.6 Score=26.08 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=26.2
Q ss_pred ccCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChHHHHHH
Q 041936 333 KGGDYETALGFCKESIAKGWVPN--FTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
..++.++|+..|+..++.-..+. -.++..++.+|...|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665522221 23455566666666666666554
No 365
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.00 E-value=39 Score=26.81 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG 246 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (402)
++|.+.|++..+. .|+..+|+.-+.... +|-++..++.+.+
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 4444444444443 566666666665542 3444444554443
No 366
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.67 E-value=6.1 Score=19.67 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 041936 360 KSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 360 ~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
..+...+...|+++.|...++...
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444455555555554444
No 367
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.66 E-value=70 Score=29.40 Aligned_cols=209 Identities=10% Similarity=0.069 Sum_probs=104.9
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHH--HHHHHHHHHHh
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGA--FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLD--TYNRVIKAFCE 193 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~ 193 (402)
...+..|+.+-+.. +.+.|..++... ..+.+...+..|+.+-+.-+++. |..|+.. .....+...+.
T Consensus 7 ~~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-----ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 7 CDAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-----GAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-----CCCccccCCCcccHHHHHHH
Confidence 33456677655444 445676666543 33455666778887655544432 4344322 12234555667
Q ss_pred cCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHccCCH
Q 041936 194 SSDSSSAYSILAEMDRKSIKPN----ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSM--YNVRIHSLCKLRKC 267 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~ 267 (402)
.|+.+.+..+++ .|...+ ..-. +.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.
T Consensus 78 ~g~~~~v~~Ll~----~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~ 148 (413)
T PHA02875 78 EGDVKAVEELLD----LGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDI 148 (413)
T ss_pred CCCHHHHHHHHH----cCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 788776555443 432211 1112 2333444566654 4455555665554321 12344455567776
Q ss_pred HHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH---HHHHHHHHccCChHHHH
Q 041936 268 AEAKALLDEMLSKGMKPNS---VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY---FTMVYFMCKGGDYETAL 341 (402)
Q Consensus 268 ~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~ 341 (402)
+-+..+ .+.|..++. .-.+. +...+..|+.+ +.+.+.+.|..++.... ...+...+..|+.+
T Consensus 149 ~~v~~L----l~~g~~~~~~d~~g~Tp-L~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~--- 216 (413)
T PHA02875 149 KGIELL----IDHKACLDIEDCCGCTP-LIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID--- 216 (413)
T ss_pred HHHHHH----HhcCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH---
Confidence 554444 444544332 22233 33344556654 44455666666654221 23444344556553
Q ss_pred HHHHHHHhCCCCCCHH
Q 041936 342 GFCKESIAKGWVPNFT 357 (402)
Q Consensus 342 ~~~~~~~~~~~~~~~~ 357 (402)
+.+.+.+.|..++..
T Consensus 217 -iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 217 -IVRLFIKRGADCNIM 231 (413)
T ss_pred -HHHHHHHCCcCcchH
Confidence 455566777776643
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.02 E-value=16 Score=24.36 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=20.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 041936 263 KLRKCAEAKALLDEMLSKGMKPN--SVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
..++.++|+..|+...+.-..+. -.++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544322211 1234444555555555544443
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.45 E-value=20 Score=28.90 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 178 KPDLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 178 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.|+..+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555554443
No 370
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.42 E-value=63 Score=27.84 Aligned_cols=169 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCCHH
Q 041936 198 SSAYSILAEMDRKS--------IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 198 ~~a~~~~~~~~~~g--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
+..-.+|.-+.+.| ++.|...++.++. -+..+.++--+-+++..+.+ -.-....+..+...|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~k--kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLK--KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHH--hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCChHH
Q 041936 269 EAKALLDEMLSK----GMKPNSV-TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS----SVYFTMVYFMCKGGDYET 339 (402)
Q Consensus 269 ~a~~~~~~~~~~----~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 339 (402)
.+.+..++..+. |.+.|.. +-..+.-.|....=.++-++..+.|.++|...+. .+|..+- +....++.+
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFke 210 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKE 210 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHH
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 340 ALGFCKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
|-.++.+....--......|...++...-+|
T Consensus 211 Aa~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 211 AAILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHhh
No 371
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.10 E-value=26 Score=30.85 Aligned_cols=88 Identities=8% Similarity=-0.057 Sum_probs=48.3
Q ss_pred HHHHHcCCHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 041936 153 LALTIAKDYKEVKRVFIEFPKTYGIKP-DLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK 231 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 231 (402)
+-|.+.|.+++|+..|...+. +.| +.+++..-..+|.+...+..|+.=....+..+ ..-...|..-+.+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 357777777777777766542 234 66777777777777777766655544444321 1112233333333334445
Q ss_pred HHHHHHHHHHHHH
Q 041936 232 YEDVNKVLQMMER 244 (402)
Q Consensus 232 ~~~a~~~~~~~~~ 244 (402)
..+|.+=++....
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 5555555554444
No 372
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.95 E-value=32 Score=24.24 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=21.6
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKS 211 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 211 (402)
.+...|++++|..+.+.+. .||...|-.|-. .+.|-.+++...+-+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCCC-----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3444455555554443331 344444443332 23344444444444444443
No 373
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.46 E-value=1.4e+02 Score=31.37 Aligned_cols=156 Identities=10% Similarity=0.019 Sum_probs=95.5
Q ss_pred HHhccCCHHHHHHHHHHHHH-----------------------CCCCC---C--hhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 225 GFYKEEKYEDVNKVLQMMER-----------------------YGMKS---G--VSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~-----------------------~~~~~---~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
+|...|+..+|+..|.+... .|-.| . ..-|..+++.+-+.+..+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35677888888888877632 12111 1 34477788888888999998888877
Q ss_pred HHHCC-C-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh------------HHHH
Q 041936 277 MLSKG-M-KPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDY------------ETAL 341 (402)
Q Consensus 277 ~~~~~-~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~------------~~a~ 341 (402)
.++.- . .|+ ..+++++.+.....|.+-+|.+.+-.-... .-.......++..++.+|.+ ++..
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~fpfigl~~eve 1086 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVE 1086 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHH
Confidence 77651 1 122 235777788778888887776654332111 11123345556666666654 3455
Q ss_pred H-HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 041936 342 G-FCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLV 382 (402)
Q Consensus 342 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (402)
. +++...+.........|+.|-..+...+++.+|--+.-+.
T Consensus 1087 ~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEy 1128 (1480)
T KOG4521|consen 1087 DFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEY 1128 (1480)
T ss_pred HHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 5 4444444443445566777777788889998887665443
No 374
>PRK10941 hypothetical protein; Provisional
Probab=71.45 E-value=43 Score=28.73 Aligned_cols=60 Identities=8% Similarity=-0.041 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.+.+-.+|.+.++++.|..+.+.+... .|+ ..-+.--.-.|.+.|.+..|..-++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344445566666666666666666653 232 333333444466666666666666666554
No 375
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.94 E-value=36 Score=32.40 Aligned_cols=87 Identities=13% Similarity=-0.027 Sum_probs=45.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041936 228 KEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
..|+...|.+.+...........-+....+.+...+.|....|-.++.+..... ...+-++-.+.+++....++++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345556666655554433212222233344444455555555665555554443 2234455556666666666666666
Q ss_pred HHHHHHhC
Q 041936 308 FYRIMSNS 315 (402)
Q Consensus 308 ~~~~m~~~ 315 (402)
.|+...+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 66666554
No 376
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.95 E-value=69 Score=27.29 Aligned_cols=250 Identities=10% Similarity=0.129 Sum_probs=141.4
Q ss_pred ChhHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHhhc-----CCCCCchHHHHHHHHHHHhcCCH
Q 041936 54 NPEKILEICRAAALTPESHLD--RLAFSIAINKLSEANYFNGISQYLEELKT-----RPDLQNERFHAHSIILYGQANMT 126 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~ 126 (402)
.|++|+.-|.....-.|-+.+ -.+...++....+.+++++..+.+.++.. ....-++...+.++..-+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 788899888776544333322 34566788899999999999998888771 11123445666777666666666
Q ss_pred HHHHHHHHHhHh----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCC---C-------CHHHHHHHHHHH
Q 041936 127 EHAVRTFKEMDE----H-KLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIK---P-------DLDTYNRVIKAF 191 (402)
Q Consensus 127 ~~A~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---p-------~~~~~~~li~~~ 191 (402)
+-....|+.-.+ . +-..--.|-..|...|...+++.+...++.++.+...-. . =...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 555555543221 1 101111233457777888888888888888874432111 1 134677888899
Q ss_pred HhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHH-----hccCCHHHHHH-HHHHHH---HCCCCCChhh---HHHHH
Q 041936 192 CESSDSSSAYSILAEMDRKS-IKPNASSFGALVAGF-----YKEEKYEDVNK-VLQMME---RYGMKSGVSM---YNVRI 258 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~-----~~~~~~~~a~~-~~~~~~---~~~~~~~~~~---~~~ll 258 (402)
....+-.+...+|++.+... .-|.+.... +++-| .+.|++++|.. +|+... +.| .|-..+ |..+.
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLA 279 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLA 279 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHH
Confidence 98888888888888775432 223333333 23333 46678877753 344333 344 232222 33444
Q ss_pred HHHHccCCHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 259 HSLCKLRKCAEAKALLDE--MLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRI 311 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~--~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (402)
+++.+.|-- -|+. .+--.-.|.....+.++.+|.. +++.+-++++..
T Consensus 280 NMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 280 NMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 455444310 0000 0111123455667788888754 455555555543
No 377
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=69.94 E-value=58 Score=27.32 Aligned_cols=78 Identities=18% Similarity=0.376 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhC---CCCCCHHhHHHH-----HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HcCCCh
Q 041936 303 EEAKKFYRIMSNS---GLSPNSSVYFTM-----VYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL--AGASKV 372 (402)
Q Consensus 303 ~~a~~~~~~m~~~---~~~~~~~~~~~l-----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~ 372 (402)
+.|.+.|+...+. .+.|...++-.+ +-.|-..|+.++|.++.+...+.. +... .....+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a-----------~~~l~~l~e~~~ 211 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA-----------ISELDTLSEESY 211 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH-----------HHGGGGSHTTTH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-----------Hhhhcccchhhh
Confidence 4455555544322 244554444333 234456899999999888776532 1111 123457
Q ss_pred HHHHHHHHHHHhcCCCChhhHHH
Q 041936 373 SEAKELIGLVKEKFTKNVDTWNE 395 (402)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~ 395 (402)
.++..+++.+.+ |...|+.
T Consensus 212 ~d~~~ilqlLrd----Nl~lW~~ 230 (236)
T PF00244_consen 212 KDSTLILQLLRD----NLTLWTS 230 (236)
T ss_dssp HHHHHHHHHHHH----HHHHHTT
T ss_pred HHHHHHHHHHHH----HHHhccc
Confidence 778778887776 6666653
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.57 E-value=81 Score=27.94 Aligned_cols=115 Identities=11% Similarity=-0.010 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---cCChHHHHHHHH
Q 041936 269 EAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK---GGDYETALGFCK 345 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~ 345 (402)
.-+.++++..+.+. -+......++..+.+..+.++..+-|+++...... +...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34445555544422 23444555555555555555555666665554211 34445444443322 123444444444
Q ss_pred HHHhC------CC----CCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 346 ESIAK------GW----VPNF-------TTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 346 ~~~~~------~~----~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+.++. +. .+.. ..+..+...+.++|..+.|..+++.+.+.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 33221 10 0111 12223334455778888888888888775
No 379
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.40 E-value=63 Score=26.63 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCH-------HHHHHHHHHhHhCCCCC----C-HHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 111 RFHAHSIILYGQANMT-------EHAVRTFKEMDEHKLRH----S-VGAFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~-------~~A~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
.++..+...|...|+. ..|.+.|.+..+..-.| + ....-.+.....+.|+.++|.++|..++..
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4444555566666663 33444444443322111 1 122333445556666777777766666544
No 380
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=69.34 E-value=80 Score=27.79 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIK 213 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 213 (402)
..|.-+..+.|+..+|.+.|.++.++..+..-......|+.++....-+.++..++-+..+...+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislP 343 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLP 343 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 34555556778888888888888665321111223445777777776666666666666555443
No 381
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.34 E-value=66 Score=26.84 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=49.8
Q ss_pred ccCCHHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHcc-CCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHH
Q 041936 228 KEEKYEDVNKVLQMMERY----G-MKSGVSMYNVRIHSLCKL-RKCAEAKALLDEMLSK--GMKPNS---VTYSHFIYGF 296 (402)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~--~~~p~~---~~~~~l~~~~ 296 (402)
+.+++++|...++..++. | +..-...+-.+...|-.. .++++|+..|+..-+- |-..+. ..+..+...-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 444666666665544331 1 111111222344444443 5677777777766542 222122 2334444445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH
Q 041936 297 CKDGNFEEAKKFYRIMSNSGLSPNS 321 (402)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~~~~~~~ 321 (402)
+..+++.+|+++|++.....+.-+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchH
Confidence 6678899999999988876544333
No 382
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.30 E-value=43 Score=26.55 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=5.9
Q ss_pred CCCHHHHHHHHHHH
Q 041936 283 KPNSVTYSHFIYGF 296 (402)
Q Consensus 283 ~p~~~~~~~l~~~~ 296 (402)
.|+..+|+.-+...
T Consensus 110 ~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 110 DPNNELYRKSLEMA 123 (186)
T ss_dssp -TT-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 45555555544433
No 383
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.69 E-value=1.2e+02 Score=29.51 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=39.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
|..-+..+..+++.. ....+.+...-.-.+...-..++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.+
T Consensus 375 W~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~r 450 (566)
T PF07575_consen 375 WQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIR 450 (566)
T ss_dssp HHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHH
Confidence 444444444333222 44444444432233555667777888888888888777776655422 23345666666777
Q ss_pred cCChHHHHHHHHHHHh
Q 041936 334 GGDYETALGFCKESIA 349 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~ 349 (402)
.|+...+..+...+.+
T Consensus 451 a~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 451 AGDYSLVTRIADRLLE 466 (566)
T ss_dssp ----------------
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777766666655553
No 384
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.63 E-value=55 Score=27.38 Aligned_cols=120 Identities=14% Similarity=0.139 Sum_probs=81.1
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHccCCh
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNS-VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY-FTMVYFMCKGGDY 337 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~g~~ 337 (402)
-|.....++.|...|.+.+.. .|+. .-|..-+.++.+..+++.+..--.+.++ +.||...- ..+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 345556788888877777665 5666 4456677778888899888877777666 45665433 3444556677888
Q ss_pred HHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 338 ETALGFCKESIA----KGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 338 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
++|...+.+... ..+++-......|..+=-+.=...+..++.++..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 999988887743 3455666677777666555555666777766654
No 385
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.54 E-value=77 Score=27.30 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=37.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh-------HHHHHHHHhccCCHHHHHHHHH
Q 041936 186 RVIKAFCESSDSSSAYSILAEMDRKSIKPNASS-------FGALVAGFYKEEKYEDVNKVLQ 240 (402)
Q Consensus 186 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~ 240 (402)
-+.+...+.+++++|+..+.++...|+..+..+ ...+...|...|++...-++..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 355666777888888888888888887666544 3445666777777665555444
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.93 E-value=14 Score=23.34 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 355 NFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
|..-.-.++.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556677777777777777666654
No 387
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.82 E-value=52 Score=25.08 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=34.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHccCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYG-----MKSGVSMYNVRIHSLCKLRK-CAEAKALLDEMLSKGMKPNSVTYSHF 292 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l 292 (402)
.+.++.-....++......+++.+..-. -..+...|.+++.+..+..- --.+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4445555555555555555555542110 01223334444444433333 22334444444444444444444444
Q ss_pred HHHHH
Q 041936 293 IYGFC 297 (402)
Q Consensus 293 ~~~~~ 297 (402)
+.++.
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 44443
No 388
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=67.22 E-value=36 Score=25.96 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=29.9
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 240 QMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
+.+.+.|+.++.. -..+++.+...++.-.|.++++++.+.+...+..|.-..++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444455444332 33445555555555566666666666555544444444444444444
No 389
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=67.16 E-value=1.3e+02 Score=31.39 Aligned_cols=220 Identities=12% Similarity=0.147 Sum_probs=105.3
Q ss_pred CCCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhc-CCcchHHHHHHHhhcCCCCCchH
Q 041936 35 PLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHL--DRLAFSIAINKLSEA-NYFNGISQYLEELKTRPDLQNER 111 (402)
Q Consensus 35 ~~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~ 111 (402)
...|+...=..++.+-..+++.+|+.+++.-....+.-. ++..|-.=+..+.+. ++.+-....+..+... ..+..
T Consensus 690 tI~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E--Dvt~t 767 (928)
T PF04762_consen 690 TIYPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE--DVTKT 767 (928)
T ss_pred hhccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc--ccccc
Confidence 444555555566667778899999999988776655442 344454445555444 5544444444444421 11222
Q ss_pred HHHHHH------------HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHchhhcCC
Q 041936 112 FHAHSI------------ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK--DYKEVKRVFIEFPKTYGI 177 (402)
Q Consensus 112 ~~~~li------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 177 (402)
.|.... ......++....-+.+....+.. .....-...++.+|++.+ ++++|+.+..++.+.
T Consensus 768 mY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~--- 843 (928)
T PF04762_consen 768 MYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE--- 843 (928)
T ss_pred ccccccccccccccccccCCCccccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc---
Confidence 222222 01112223333333333322211 233344567788888888 888888888888432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 041936 178 KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVR 257 (402)
Q Consensus 178 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (402)
+...-...++..+- +-.+-++|+..+.. -|. =.+++-|-..+.|+.+=+-.++++.+. ++... ..-
T Consensus 844 --~~~~ae~alkyl~f---LvDvn~Ly~~ALG~---YDl--~Lal~VAq~SQkDPKEYLPfL~~L~~l--~~~~r--ry~ 909 (928)
T PF04762_consen 844 --DPESAEEALKYLCF---LVDVNKLYDVALGT---YDL--ELALMVAQQSQKDPKEYLPFLQELQKL--PPLYR--RYK 909 (928)
T ss_pred --ChHHHHHHHhHhee---eccHHHHHHHHhhh---cCH--HHHHHHHHHhccChHHHHHHHHHHHhC--Chhhe--eee
Confidence 11111111111111 11122222222211 000 011222334456777777777776653 23221 112
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 041936 258 IHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~ 276 (402)
|+. ..+++++|++.+.+
T Consensus 910 ID~--hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 910 IDD--HLKRYEKALRHLSA 926 (928)
T ss_pred Hhh--hhCCHHHHHHHHHh
Confidence 232 34788888877654
No 390
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=67.00 E-value=40 Score=25.72 Aligned_cols=49 Identities=8% Similarity=0.165 Sum_probs=22.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh
Q 041936 274 LDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSV 323 (402)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 323 (402)
.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33444445543332 22344444444444555555555555544443333
No 391
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.83 E-value=96 Score=27.75 Aligned_cols=19 Identities=11% Similarity=-0.123 Sum_probs=13.3
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 041936 191 FCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~ 209 (402)
|...++++.|.-+|....-
T Consensus 193 ciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT 211 (422)
T ss_pred eeccccHHHHHHHHHHHHh
Confidence 3456778888888877664
No 392
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.31 E-value=27 Score=33.17 Aligned_cols=99 Identities=16% Similarity=0.019 Sum_probs=70.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 041936 298 KDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKE 377 (402)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 377 (402)
..|+...|...+.........-.......|.....+.|....|..++...+... ...+-++-.+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356777777777666543221122334455666667778888888888777765 5567778888899999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHH
Q 041936 378 LIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~l~ 397 (402)
.|++..+..+.+...=+.|.
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHhcCCCChhhHHHHH
Confidence 99999988777766655553
No 393
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.09 E-value=25 Score=20.77 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=14.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFGALV 223 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (402)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555444444444443
No 394
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.63 E-value=89 Score=26.94 Aligned_cols=199 Identities=17% Similarity=0.164 Sum_probs=108.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHH-------HHHHHHHHhcCChhHHHHHHHHHH----hCCCCCCHhh
Q 041936 150 ALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTY-------NRVIKAFCESSDSSSAYSILAEMD----RKSIKPNASS 218 (402)
Q Consensus 150 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-------~~li~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~ 218 (402)
.+.+-..+.+++++|+..+.++... |+..|..+. ..+...|...|+....-+...... +-.-+.....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 3556677889999999999999654 777776553 446677888888777666554332 2222223445
Q ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHccCCHHHHHHHHHHH----HHCCCCCCHHH
Q 041936 219 FGALVAGFYK-EEKYEDVNKVLQMMERYGMKSGV-----SMYNVRIHSLCKLRKCAEAKALLDEM----LSKGMKPNSVT 288 (402)
Q Consensus 219 ~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~ 288 (402)
..+++..+-. ...++..+.+.....+....... ..-..++..+.+.|.+.+|+.+...+ ++..-+|+..+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 5566665543 34456666666555543211211 11234566777888888887765544 33344454443
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHhHHHHHHHH--HccCChHHHHHHHHHHHh
Q 041936 289 YSHF-IYGFCKDGNFEEAKKFYRIMSNS----GLSPNSSVYFTMVYFM--CKGGDYETALGFCKESIA 349 (402)
Q Consensus 289 ~~~l-~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 349 (402)
...+ -.+|....+..++..-+...... -++|....---++.+. |...++..|..+|-+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 3222 23455555555555444443322 1233333333333333 334456667666666554
No 395
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.29 E-value=21 Score=22.50 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=9.0
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 041936 187 VIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~ 207 (402)
+|.++...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444444444444444444443
No 396
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=65.17 E-value=79 Score=26.17 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=23.6
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhh
Q 041936 44 AALTLLKSESNPEKILEICRAAALTP-ESHLDRLAFSIAINKLSEANYFNGISQYLEELK 102 (402)
Q Consensus 44 ~~l~~l~~~~~~~~al~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (402)
.++..+-+.|.-+.|-.+-...+..+ ...++...-..-|....+.|++++|.+....+.
T Consensus 32 LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 32 LVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 44444444444444433333333332 121222222223334444555555555554443
No 397
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.59 E-value=46 Score=26.48 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred cchHHHHHHHhhcCCCCC-------chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC
Q 041936 91 FNGISQYLEELKTRPDLQ-------NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD 160 (402)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (402)
++.|+.+|+.+.+.-..+ ..-+-...+..|.+.|.+++|.+++++..+ .|+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
No 398
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.26 E-value=19 Score=31.11 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRH 143 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (402)
+..+|+..|....+.||+++|+.++++..+.|+.-
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 44556677777777777777777777777766543
No 399
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.08 E-value=79 Score=26.33 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCCCCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHH
Q 041936 33 KTPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERF 112 (402)
Q Consensus 33 ~~~~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 112 (402)
+.|.........+++.|...++++.|+.+++... +...+......++.. ..++.+.+|..+-+. .........
T Consensus 102 ~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~---~~~~~~~~l 174 (226)
T PF13934_consen 102 SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRS---YPDELRRRL 174 (226)
T ss_pred CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHh---CchhhhHHH
Q ss_pred HHHHHHHHH----hcCCHHHHHHH
Q 041936 113 HAHSIILYG----QANMTEHAVRT 132 (402)
Q Consensus 113 ~~~li~~~~----~~~~~~~A~~~ 132 (402)
+..++..+. +.+..++-..+
T Consensus 175 ~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 175 FEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhC
No 400
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=63.69 E-value=44 Score=32.34 Aligned_cols=91 Identities=19% Similarity=0.175 Sum_probs=58.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHhHHHH
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSK--GMKPNSVTYSHFIYGFCKDGNFE------EAKKFYRIMSNSGLSPNSSVYFTM 327 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~~~l 327 (402)
++..+|...|++..+.++++.+... |-+.-...||..++.+.+.|.++ .|.+.++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7888888999999999888888754 32333456777888888888764 233333333 345577788877
Q ss_pred HHHHHccCChHHHHHHHHHHHh
Q 041936 328 VYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
+.+-...-.-....-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765554444444444554443
No 401
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.48 E-value=19 Score=31.00 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=26.2
Q ss_pred CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 041936 178 KPDLDT-YNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSF 219 (402)
Q Consensus 178 ~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 219 (402)
.||..+ |+..|....+.||+++|++++++.++.|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 344443 457777777777777777777777777754333333
No 402
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.18 E-value=32 Score=20.32 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=20.3
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
..+.|-.+++..+++.|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666666666666666666665555543
No 403
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=60.75 E-value=89 Score=27.23 Aligned_cols=155 Identities=13% Similarity=0.063 Sum_probs=78.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
++....+.++..+..+.+..+ .....-...++.+...|++..|++++.+..+.- . +..-|..+=.. ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i------~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI------KTVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---hHH
Confidence 344444444444444444444 244555667777888899999999988876531 0 11111111111 112
Q ss_pred HHHHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---CChH
Q 041936 302 FEEAKKFYRIMSNS-----GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGA---SKVS 373 (402)
Q Consensus 302 ~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~ 373 (402)
+++-.....++.+. -...|+..|..+..+|.-.|+...+.+-+...--.. ....+.. ++..+... ...+
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~--i~~~~~~-vv~~~~~~~~~~~~~ 249 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSA--IHSTTFS-VVRSYVEQSESSEER 249 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHhccccccc
Confidence 22223333322221 114688889999999988887766555444443332 2233333 33333332 1222
Q ss_pred HHHHHHHHHHhcCCCCh
Q 041936 374 EAKELIGLVKEKFTKNV 390 (402)
Q Consensus 374 ~a~~~~~~~~~~~~~~~ 390 (402)
...--|+++....|++.
T Consensus 250 ~~~~~y~~lC~~v~~~~ 266 (291)
T PF10475_consen 250 SSKMSYKDLCKQVPSDQ 266 (291)
T ss_pred cccCCHHHHHhhCCHHH
Confidence 23335667766655543
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.58 E-value=51 Score=22.50 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=16.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChH
Q 041936 298 KDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYE 338 (402)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 338 (402)
..|+.+.|.+++..+. .| | ..|..++.++...|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchh
Confidence 3345555555555554 32 1 13444444444444433
No 405
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=60.55 E-value=1.8e+02 Score=28.85 Aligned_cols=184 Identities=13% Similarity=0.114 Sum_probs=80.9
Q ss_pred HHHHHHHhhcCCCCCchHHH-HHHHHHHHhcCCHHHHHHHHHHhH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 94 ISQYLEELKTRPDLQNERFH-AHSIILYGQANMTEHAVRTFKEMD-EHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 94 a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
.....+.+.+....+...+- ..+-..|.-.|++++|+.+--..- ...+.++...+..++.-|... -.+.+.+.++.-
T Consensus 42 ~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~ 120 (929)
T KOG2062|consen 42 SLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKNP 120 (929)
T ss_pred hHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcCc
Confidence 33444444433333333333 222346777788888877654442 334555555555555433322 122233333321
Q ss_pred hhhcCCCCCH-HHHHHHHHHHHhcCChhHHHH---------HHHHH-HhCCCCCCHhhHHHHHHHHhccCC-HHHHHHHH
Q 041936 172 PKTYGIKPDL-DTYNRVIKAFCESSDSSSAYS---------ILAEM-DRKSIKPNASSFGALVAGFYKEEK-YEDVNKVL 239 (402)
Q Consensus 172 ~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~---------~~~~~-~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 239 (402)
.+..++.+-. ....-++..|...+++..|+. ++++. .+..- +....+.++..+..... .+.-.+++
T Consensus 121 ~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~--~~~~~~yll~l~~s~v~~~efR~~vl 198 (929)
T KOG2062|consen 121 EQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDS--VIGNLTYLLELLISLVNNREFRNKVL 198 (929)
T ss_pred cccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccc--cchHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111122211 123344444444444444332 23321 11111 12233333333333222 33333444
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 240 QMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
..+.+.-.+-...-|..+.++|.-..+.+.+.++++++.+.
T Consensus 199 r~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 199 RLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 44433211112222566777777788888888888888764
No 406
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=59.75 E-value=1.4e+02 Score=27.40 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=78.1
Q ss_pred CCCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHH
Q 041936 35 PLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHA 114 (402)
Q Consensus 35 ~~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 114 (402)
.-.+.+..-+..++|....+|+.. ..... ..+.||..+.+-+...++..-..+-...+|+....+.+|.-..+..
T Consensus 148 dcrpkg~~Fh~FRLLlqYHdPelc----~~Ldt-kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLa 222 (669)
T KOG3636|consen 148 DCRPKGQIFHLFRLLLQYHDPELC----NHLDT-KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLA 222 (669)
T ss_pred CCCCCCccchHHHHHHHhcCHHHh----hhhhc-cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHH
Confidence 345666777788888888888643 33332 3577899999988888888888888889998888776665544433
Q ss_pred HHHHH-------HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 041936 115 HSIIL-------YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI 157 (402)
Q Consensus 115 ~li~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (402)
.++-. -.+...-++++++++.|...=--.|+.-+-.|..-|+.
T Consensus 223 liiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 223 LIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred HHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHhh
Confidence 33321 12345567888888888753223455556666665554
No 407
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.77 E-value=56 Score=27.61 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh----CC-CCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDR----KS-IKPNASSFGALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~----~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
.-.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33566667777777777777776642 12 2334455666667777777777766655444
No 408
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=58.62 E-value=1.3e+02 Score=26.65 Aligned_cols=66 Identities=12% Similarity=0.075 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 179 PDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKP---NASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 179 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
....+|..+++.+.+.|.++.|...+..+...+... .+.+...-...+-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567788888888888888888888887643211 334444455666677888888888877766
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.00 E-value=58 Score=22.27 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=16.9
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChH
Q 041936 333 KGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVS 373 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 373 (402)
..|+.+.|.+++..+. +| +..|..++.++.+.|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555554 32 234444555555444433
No 410
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.97 E-value=15 Score=27.37 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=21.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFGALVAG 225 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 225 (402)
..|.-..|..+|++|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345667788888888888877764 6666544
No 411
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.81 E-value=38 Score=20.57 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=12.7
Q ss_pred HHHHHccCChHHHHHHHHHHHhC
Q 041936 328 VYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.-++.+.|++++|.+..+.+++.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh
Confidence 34455666666666666666553
No 412
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.46 E-value=69 Score=22.66 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=5.3
Q ss_pred HhcCCHHHHHHHH
Q 041936 297 CKDGNFEEAKKFY 309 (402)
Q Consensus 297 ~~~~~~~~a~~~~ 309 (402)
...|++++|..+.
T Consensus 50 mNrG~Yq~Al~l~ 62 (115)
T TIGR02508 50 MNRGDYQSALQLG 62 (115)
T ss_pred HccchHHHHHHhc
Confidence 3344444444333
No 413
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=56.44 E-value=1.4e+02 Score=26.39 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=40.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSK---GMKPNSVTYSH--FIYGFCKDGNFEEAKKFYRIMSN-----SGLSPNS 321 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~ 321 (402)
++...-+.++.++|.++++++.+. --.|+.+.|.. +.+++...||..++.+.+.+..+ .|+.|+.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 344445566788888888877653 22456555543 44556667788888887777766 4565543
No 414
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.27 E-value=85 Score=23.67 Aligned_cols=66 Identities=6% Similarity=0.143 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 285 NSVTYSHFIYGFCKDG---NFEEAKKFYRIMSNSGL-SPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+..+-..+.-++.+.. +..+.+.+++++.+... .-.....-.|.-++.+.++++++.++++.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3333333444444433 33445555555554211 111222233444555666666666666555543
No 415
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=56.26 E-value=2.6e+02 Score=29.17 Aligned_cols=147 Identities=7% Similarity=-0.037 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC--CCC-C-C--------HHHHHHHHHHHH
Q 041936 230 EKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK--GMK-P-N--------SVTYSHFIYGFC 297 (402)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-p-~--------~~~~~~l~~~~~ 297 (402)
|..---.++|+...+. +|-.+...+.-+.+..|.++-+.+....+.+. ... | + ...|-.-+.+..
T Consensus 670 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (932)
T PRK13184 670 GFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALS 746 (932)
T ss_pred cCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344444555555442 33334444444456778877776666655532 011 1 1 111222344555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChH
Q 041936 298 KDGNFEEAKKFYRIMSNSGLSPN--SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN--FTTMKSLVTGLAGASKVS 373 (402)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 373 (402)
...+++++.+.+... .|. ...+..++.-+...++.+....+.+.+.+.-.+.. .......+.+|.-..+++
T Consensus 747 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (932)
T PRK13184 747 NKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLK 821 (932)
T ss_pred ccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHH
Confidence 555666665533322 222 22334444444445555555555555544321111 123344567777777888
Q ss_pred HHHHHHHHHHh
Q 041936 374 EAKELIGLVKE 384 (402)
Q Consensus 374 ~a~~~~~~~~~ 384 (402)
+|-++++....
T Consensus 822 ~~~~~~~~~~~ 832 (932)
T PRK13184 822 KAYKLLNRYPL 832 (932)
T ss_pred HHHHHHHhCCh
Confidence 88888765544
No 416
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.49 E-value=84 Score=27.37 Aligned_cols=57 Identities=9% Similarity=0.280 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041936 271 KALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 332 (402)
.++|+.+.+.++.|.-..|..+.-.+.+.=.+...+.+|+.+... ..-|..++..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 466777777777777777777766666766777777777777753 222555555554
No 417
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=55.41 E-value=74 Score=26.88 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDE----HK-LRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
..+...+...|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+--++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34445677789999999999999998752 33 2345566777888899999998887765554
No 418
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.19 E-value=1.7e+02 Score=26.85 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=6.8
Q ss_pred HHHHcCCHHHHHHHH
Q 041936 154 ALTIAKDYKEVKRVF 168 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~ 168 (402)
..+..|+.+.+..++
T Consensus 74 ~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 74 DAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHCCCHHHHHHHH
Confidence 334445554444444
No 419
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=55.07 E-value=72 Score=24.04 Aligned_cols=67 Identities=9% Similarity=-0.085 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhcC---CcchHHHHHHHhhc-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 041936 73 LDRLAFSIAINKLSEAN---YFNGISQYLEELKT-RPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
++..+-..+.-++.+.. +..+.+.+++.+.+ ...........-+.-++.+.+++++++++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44455555556666654 44556677777774 222222333334555688888888888888887765
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.01 E-value=68 Score=22.15 Aligned_cols=22 Identities=9% Similarity=-0.120 Sum_probs=13.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHh
Q 041936 363 VTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
.......|++++|.+.+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3444556666666666666554
No 421
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.91 E-value=89 Score=27.23 Aligned_cols=58 Identities=14% Similarity=0.242 Sum_probs=47.7
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041936 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK 298 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 298 (402)
.++++.+...++.|.-.++.-+.-.+.+.-.+.+++.+|+.+... ..-|..++..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 468888899999999999998888899999999999999999864 3336667766653
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.69 E-value=1.7e+02 Score=26.69 Aligned_cols=52 Identities=15% Similarity=0.024 Sum_probs=26.0
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHch
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVG--AFNALLLALT--IAKDYKEVKRVFIEFP 172 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~ 172 (402)
+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33566666666666666554 333333 3333334333 3345556666665553
No 423
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.44 E-value=1.2e+02 Score=27.75 Aligned_cols=91 Identities=9% Similarity=-0.015 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC--CCCCC-HHHHHHHHHHH
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH--KLRHS-VGAFNALLLAL 155 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~-~~~~~~l~~~~ 155 (402)
+..+.+....++.+.....+-...-. .....-....+++.+.-.|+.....+.++.|.+. |-.|. ..| .-+.-+|
T Consensus 205 ~~ql~~~~s~~dp~~va~~~g~s~~y-~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFay 282 (525)
T KOG3677|consen 205 SIQLTASVSNKDPALVALIFGASQPY-ANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAY 282 (525)
T ss_pred HHHHHHHhcCCChhhhhhhhccccHH-HhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHH
Confidence 44444555555555444433322200 0112223345566666666666666666666542 21222 222 2344455
Q ss_pred HHcCCHHHHHHHHHHc
Q 041936 156 TIAKDYKEVKRVFIEF 171 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~ 171 (402)
.-.|++.+|.+.|-.+
T Consensus 283 Lmmrryadai~~F~ni 298 (525)
T KOG3677|consen 283 LMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666544
No 424
>PRK13342 recombination factor protein RarA; Reviewed
Probab=54.33 E-value=1.8e+02 Score=26.87 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 041936 299 DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG 335 (402)
Q Consensus 299 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 335 (402)
..+.+.|+.++..|.+.|..|....-..++.++-..|
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3677777777777777776666544444444444443
No 425
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.95 E-value=29 Score=22.21 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=23.1
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 041936 320 NSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 368 (402)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (402)
....++.++..+++..-.+.+...+.++.+.| ..+..+|..-++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555 3344444444444433
No 426
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.84 E-value=80 Score=22.63 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
..++|..|.+-+...+. -...+-.+-+..+.+.|++++| -..-.....||...|.+|... +.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A----Ll~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA----LLLPQCHCYPDLEPWAALCAW--KLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH----HHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH----HHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHH
Q ss_pred HHHhCCCCCCHHHHHH
Q 041936 346 ESIAKGWVPNFTTMKS 361 (402)
Q Consensus 346 ~~~~~~~~~~~~~~~~ 361 (402)
++..+| .|....|..
T Consensus 94 rla~~g-~~~~q~Fa~ 108 (116)
T PF09477_consen 94 RLASSG-SPELQAFAA 108 (116)
T ss_dssp HHCT-S-SHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHH
No 427
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=52.83 E-value=1.3e+02 Score=26.78 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 303 EEAKKFYRIMSNSGLSPN----SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 303 ~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
+++..++..++.. -|+ +..|.++++.....|.++.++.+|++++..|..|-...-..++..+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566666666654 233 24566677777777777778888888877777777666666666654
No 428
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.66 E-value=2.2e+02 Score=27.38 Aligned_cols=93 Identities=11% Similarity=0.160 Sum_probs=58.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HccCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHc
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM-CKGGDYETALGFCKESIAK---GWVPNFTTMKSLVTGLAG 368 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 368 (402)
|....+.|.+..|+++.+-+.+....-|+.....+|+.| .+..+++-.++++++.... ..-|+-..-.++...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 455677888888888888888765444566666677766 4567777777777766433 234554444455556655
Q ss_pred CCC---hHHHHHHHHHHHhc
Q 041936 369 ASK---VSEAKELIGLVKEK 385 (402)
Q Consensus 369 ~g~---~~~a~~~~~~~~~~ 385 (402)
... -+.|...+.++...
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKH 448 (665)
T ss_pred cCChhhHHHHHHHHHHHHHh
Confidence 544 34555555555543
No 429
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.54 E-value=2.6e+02 Score=28.06 Aligned_cols=155 Identities=11% Similarity=0.126 Sum_probs=93.5
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC
Q 041936 81 AINKLSEANYFNGISQYLEELKTRPD-LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK 159 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (402)
-++.+.+.+.+++|++..+....... ..........|..+...|++++|-...-.|. .-+..-|...+.-+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhcccc
Confidence 35677888999999988887652221 1245677788888899999999999988887 345667777777777776
Q ss_pred CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH--------------HHhC--CCCCCHhhHHHHH
Q 041936 160 DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAE--------------MDRK--SIKPNASSFGALV 223 (402)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~--------------~~~~--g~~~~~~~~~~l~ 223 (402)
+......+ ++.. .-..+...|..++..+.. .+...-.++..+ ...+ ....+...-..|.
T Consensus 438 ~l~~Ia~~---lPt~-~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 438 QLTDIAPY---LPTG-PPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred ccchhhcc---CCCC-CcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 65544333 3221 112345567777776665 222222221111 0000 0011122333477
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 041936 224 AGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~ 244 (402)
..|...+++..|..++-.+++
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 778888888888887766543
No 430
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=52.52 E-value=4.2e+02 Score=30.59 Aligned_cols=150 Identities=11% Similarity=0.121 Sum_probs=83.1
Q ss_pred HHHHHHhcCCcchHHHHHHHhh--cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 041936 81 AINKLSEANYFNGISQYLEELK--TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA 158 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (402)
+..+-.+++.+.+|.-.++.-. ..........+..+...|+..+++|...-+...-.. .|+ .+ .-|......
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHhh
Confidence 3344456677777777777732 011112234444555578888888877776664211 222 22 234456667
Q ss_pred CCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH-HHHHHhccCCHHHHH
Q 041936 159 KDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGA-LVAGFYKEEKYEDVN 236 (402)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~ 236 (402)
|+++.|...|+.+.+. .|+ ..+++-++......|.++.+.-..+-.... ..+....++. =+.+--+.++++...
T Consensus 1463 g~~~da~~Cye~~~q~---~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQK---DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred ccHHHHHHHHHHhhcC---CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 8888888888888643 444 556776666666667777666655544433 1222222222 233335566666655
Q ss_pred HHHH
Q 041936 237 KVLQ 240 (402)
Q Consensus 237 ~~~~ 240 (402)
+.+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5544
No 431
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.49 E-value=2.3e+02 Score=28.87 Aligned_cols=176 Identities=10% Similarity=0.098 Sum_probs=103.4
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 041936 53 SNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRT 132 (402)
Q Consensus 53 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 132 (402)
.++++.+.+.+....- =..+|..+.+.|..+-|+...+.-. +- ...+..+|+.+.|++.
T Consensus 607 k~ydeVl~lI~ns~Lv---------GqaiIaYLqKkgypeiAL~FVkD~~---------tR---F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 607 KKYDEVLHLIKNSNLV---------GQAIIAYLQKKGYPEIALHFVKDER---------TR---FELALECGNLEVALEA 665 (1202)
T ss_pred hhhHHHHHHHHhcCcc---------cHHHHHHHHhcCCcceeeeeecCcc---------hh---eeeehhcCCHHHHHHH
Confidence 3555555555444322 1445556666676666655443321 11 2235678888888877
Q ss_pred HHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041936 133 FKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSI 212 (402)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 212 (402)
-.++ -+..+|..|.......|+.+-|+..|+.. +. |..|--.|.-.|+.++..++.+....+.
T Consensus 666 akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~-kn---------fekLsfLYliTgn~eKL~Km~~iae~r~- 728 (1202)
T KOG0292|consen 666 AKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRT-KN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN- 728 (1202)
T ss_pred HHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHh-hh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh-
Confidence 6654 45568999999999999999999888877 32 4444445666788887777766554432
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 213 KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
|..+ ....+ .-.|+.++-.++++..-. .| -.|.. -...|.-++|.++.++....
T Consensus 729 --D~~~--~~qna-lYl~dv~ervkIl~n~g~---~~--laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 729 --DATG--QFQNA-LYLGDVKERVKILENGGQ---LP--LAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred --hhHH--HHHHH-HHhccHHHHHHHHHhcCc---cc--HHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 2221 11111 234677776666654322 11 11211 13457778888888887663
No 432
>PRK09857 putative transposase; Provisional
Probab=52.32 E-value=1.2e+02 Score=26.48 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
.++....+.++.++..++++.+.+. .+.......++..-+.+.|.-+++.++..+|...|+.+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3443334445544455555544443 12222333344454555555555666666666666543
No 433
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.98 E-value=19 Score=26.86 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=22.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 041936 228 KEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHS 260 (402)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (402)
..|.-..|..+|.+|.+.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 445566788888888888877764 6777654
No 434
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.90 E-value=1.9e+02 Score=26.43 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEM 136 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~ 136 (402)
+..+...|..+|+++.|++.|.+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhh
Confidence 334444455555555555555443
No 435
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.73 E-value=1.4e+02 Score=24.98 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHchh
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI-AKDYKEVKRVFIEFPK 173 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 173 (402)
.++..+-+.|+++++...++++...+...+..--|.+-.+|-. -|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4566677888888888888888877766777666666666632 3445566666666533
No 436
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=51.65 E-value=1.4e+02 Score=24.78 Aligned_cols=99 Identities=19% Similarity=0.216 Sum_probs=54.3
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041936 247 MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP---NSVTY--SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS 321 (402)
Q Consensus 247 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 321 (402)
+.+...-+|.|+--|.-...+.+|.+.|..- .|+.| |..++ ..-|......|+.+.|++....+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 3455555666665555555555566555543 33333 33333 33466667888888888888777654333343
Q ss_pred HhHHHHH----HHHHccCChHHHHHHHHHH
Q 041936 322 SVYFTMV----YFMCKGGDYETALGFCKES 347 (402)
Q Consensus 322 ~~~~~l~----~~~~~~g~~~~a~~~~~~~ 347 (402)
..+-.+. .-..+.|..++|+++.+.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333222 1234566666666665543
No 437
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.74 E-value=1e+02 Score=22.91 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhH
Q 041936 342 GFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTW 393 (402)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 393 (402)
+-+..+...++.|++.....-+++|.+.+++..|.++|+-++.+..+....|
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y 121 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVY 121 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHH
Confidence 3334444444455555555555555555555555555555544433333333
No 438
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.47 E-value=82 Score=21.74 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=12.0
Q ss_pred HHHHHHcCCHHHHHHHHHHch
Q 041936 152 LLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~~~ 172 (402)
.......|++++|...+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 344555566666666666554
No 439
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=50.39 E-value=58 Score=31.57 Aligned_cols=58 Identities=12% Similarity=0.246 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (402)
-.-++..|.+.|-.+.+.++.+.+-.+-. ...-|...+.-+.+.|+...+..+-+.+.
T Consensus 408 ~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 408 AEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444555555555555555544433211 12234444445555555555555444444
No 440
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.37 E-value=84 Score=22.65 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
+++....++...++|+++++.|.++| ..+...-+.|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 56677788888899999999998888 55555544444333
No 441
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.26 E-value=2e+02 Score=26.08 Aligned_cols=92 Identities=13% Similarity=0.253 Sum_probs=60.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HccCChHHHHHHHHHHHhC---C---CCCCHHHHHHHHH
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM-CKGGDYETALGFCKESIAK---G---WVPNFTTMKSLVT 364 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~---~---~~~~~~~~~~l~~ 364 (402)
.|..+.+.|.+..|.++.+-+......-|+.....+|+.| .+.++++-..++.+..... . .-|+ ..|+..+.
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aLA 187 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIALA 187 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHHH
Confidence 3567788999999999999999876555666666677766 4677888788887776542 1 1232 34444443
Q ss_pred HHHcCCCh---------------HHHHHHHHHHHhc
Q 041936 365 GLAGASKV---------------SEAKELIGLVKEK 385 (402)
Q Consensus 365 ~~~~~g~~---------------~~a~~~~~~~~~~ 385 (402)
.+ ..++. +.|.+.+.+....
T Consensus 188 ~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 188 YF-RLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HH-HhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 33 33443 7777777766554
No 442
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.21 E-value=2.1e+02 Score=26.44 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=17.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041936 194 SSDSSSAYSILAEMDRKSIKPNASSFGALV 223 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (402)
.++++.|+.++..|.+.|..|....-..++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356666666666666666555543333333
No 443
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=49.91 E-value=2.4e+02 Score=26.98 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=28.2
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.++...++....+..|+..+......++.. ..|++..|...++++..
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 345555555555556666666665555553 35677777777776643
No 444
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=49.85 E-value=2.7e+02 Score=27.49 Aligned_cols=214 Identities=12% Similarity=0.066 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHchhhcCCCCCHH---HH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY-------KEVKRVFIEFPKTYGIKPDLD---TY 184 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~p~~~---~~ 184 (402)
.+|..|.++|++++|.++.......- ......+-..+..|....+- ++...-|++..+. ....|+. .|
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~-~~~~DpyK~AvY 193 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN-STDGDPYKRAVY 193 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT--TTS-HHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC-CCCCChHHHHHH
Confidence 67777889999999999997665433 55556677777777765321 2444455544332 1111432 23
Q ss_pred HHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC-----------HHHHHHHHHHHHHCCCCCCh
Q 041936 185 NRVIKAFCESS--DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK-----------YEDVNKVLQMMERYGMKSGV 251 (402)
Q Consensus 185 ~~li~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~ 251 (402)
.++ +.|... ...+ +..+.+-|-.+=-.+.+... +++..+.+...-+..+.+ .
T Consensus 194 ~il--g~cD~~~~~~~~------------V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~ 258 (613)
T PF04097_consen 194 KIL--GRCDLSRRHLPE------------VARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-G 258 (613)
T ss_dssp HHH--HT--CCC-S-TT------------C--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred HHH--hcCCccccchHH------------HhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-c
Confidence 333 111110 0101 11111112111111111111 222222222332222333 1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG-LSPNSSVYFTMVYF 330 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~ 330 (402)
...-.....+.-.|.++.|.+.+-+ ..+...|.+.+...+..|.-.+-.+... ..+.... -.|...-+..||..
T Consensus 259 ~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 259 SNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQ 333 (613)
T ss_dssp -----HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHH
Confidence 1122344566677999999998887 2223446666655555443322222211 2222211 11122456777777
Q ss_pred HHc---cCChHHHHHHHHHHHhC
Q 041936 331 MCK---GGDYETALGFCKESIAK 350 (402)
Q Consensus 331 ~~~---~g~~~~a~~~~~~~~~~ 350 (402)
|.+ ..+..+|.+++--+...
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHhccCHHHHHHHHHHHHHc
Confidence 765 45777888877666554
No 445
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=48.43 E-value=76 Score=20.78 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA 158 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (402)
+.+.|..++..+.... +.++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4556666666665433 56666777666655443
No 446
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.22 E-value=95 Score=21.86 Aligned_cols=41 Identities=32% Similarity=0.565 Sum_probs=21.1
Q ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 95 SQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKE 135 (402)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 135 (402)
.+.++++...+....+..+..+--.|++.|+.+.|.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 34444444444444444444444456666666666666655
No 447
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.18 E-value=1.8e+02 Score=25.36 Aligned_cols=113 Identities=10% Similarity=0.115 Sum_probs=52.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 151 LLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
++....+.++.....+.++.+. ....-...+......|++..|++++.+..+. .. ....|+.+=..- .
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~---~ 171 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLS---S 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHh---H
Confidence 4444555555555555555552 2233444555666677777777776655442 00 111111111110 1
Q ss_pred CHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 231 KYEDVNKVLQMMERYG-----MKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 231 ~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
++++-....+.+.+.. ..-|...|..+..+|...|+...+.+-+.
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1122222222111100 13566778888888887777666554333
No 448
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=48.13 E-value=47 Score=30.73 Aligned_cols=103 Identities=15% Similarity=0.073 Sum_probs=62.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccC
Q 041936 258 IHSLCKLRKCAEAKALLDEMLSKGMKPNSV-TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGG 335 (402)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g 335 (402)
...+...++++.|..++.+.++. .|+.. .|..-..++.+.+++..|+.=+...++.. |+ ...|..=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 44455667888888888888876 55433 44444477788888888887777777643 32 222322333444455
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041936 336 DYETALGFCKESIAKGWVPNFTTMKSLVTGL 366 (402)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (402)
.+.+|...|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 56666666655544 356666555555544
No 449
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.02 E-value=3.2e+02 Score=27.87 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=54.4
Q ss_pred CCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHH
Q 041936 36 LTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDR--LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFH 113 (402)
Q Consensus 36 ~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 113 (402)
...+...+.+-+.+-+.|+++.|++..+.. |+. .++..-...+.+.+++..|.+++-++. ..+
T Consensus 355 ~~vndE~R~vWk~yLd~g~y~kAL~~ar~~-------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~--------~~F 419 (911)
T KOG2034|consen 355 YGVNDEARDVWKTYLDKGEFDKALEIARTR-------PDALETVLLKQADFLFQDKEYLRAAEIYAETL--------SSF 419 (911)
T ss_pred eeeccchHHHHHHHHhcchHHHHHHhccCC-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh--------hhH
Confidence 455666778888888999999999886433 221 234444556777888999988888864 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 041936 114 AHSIILYGQANMTEHAVRTFKE 135 (402)
Q Consensus 114 ~~li~~~~~~~~~~~A~~~~~~ 135 (402)
..+.--+....+.+ +++.|-.
T Consensus 420 EEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 420 EEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHHHHHhcCCHH-HHHHHHH
Confidence 44444555666655 5554443
No 450
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=47.93 E-value=2.5e+02 Score=26.56 Aligned_cols=72 Identities=11% Similarity=0.176 Sum_probs=47.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 325 FTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG--ASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
+.+++.+.+.|-.++|...+..+.... +|+...|..+++.-.. .-+...+.++++.+...+..|+..|--.+
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~ 537 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYM 537 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 345555666677777777777777654 6677777777665322 22367777788887777667777775543
No 451
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=47.71 E-value=3.2e+02 Score=27.77 Aligned_cols=47 Identities=9% Similarity=-0.011 Sum_probs=26.6
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.++..+.++.+.+..|+.-+......+.+. ..|+...|+.++++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 344555555555555665555555554443 35677777777665543
No 452
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=47.49 E-value=1.4e+02 Score=23.52 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=17.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 194 SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
.++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444455555555555554444444433444444443
No 453
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.38 E-value=2e+02 Score=25.27 Aligned_cols=146 Identities=9% Similarity=0.052 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHCCC----CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041936 233 EDVNKVLQMMERYGM----KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKF 308 (402)
Q Consensus 233 ~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 308 (402)
+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... ++...-..++.+.+...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHH
Confidence 456666666655321 234444555566666666655544444444432 2555566677777777777777777
Q ss_pred HHHHHhCC-CCCCHHhHHHHHHHHHccCC--hHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 041936 309 YRIMSNSG-LSPNSSVYFTMVYFMCKGGD--YETALGFCKESI---AKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLV 382 (402)
Q Consensus 309 ~~~m~~~~-~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (402)
++.....+ +++ ... ..++.++...+. .+.+.+++.+-. ...+..+......++..+...-..++-.+-+++.
T Consensus 224 l~~~l~~~~v~~-~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f 301 (324)
T PF11838_consen 224 LDLLLSNDKVRS-QDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEF 301 (324)
T ss_dssp HHHHHCTSTS-T-TTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHH
T ss_pred HHHHcCCccccc-HHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 77777643 332 222 333334432332 355555554321 1122223335555666555544444444445544
Q ss_pred H
Q 041936 383 K 383 (402)
Q Consensus 383 ~ 383 (402)
.
T Consensus 302 ~ 302 (324)
T PF11838_consen 302 F 302 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 454
>PRK12798 chemotaxis protein; Reviewed
Probab=47.14 E-value=2.3e+02 Score=26.03 Aligned_cols=247 Identities=11% Similarity=0.053 Sum_probs=136.3
Q ss_pred ccccCCCCCCCCCCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh--cCCcchHHHHHHHh
Q 041936 24 TSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSE--ANYFNGISQYLEEL 101 (402)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~ 101 (402)
....+...++..+....+...++-.+-+.|+|.....++..-... . .=..++.+... .|+-.++.+.+..+
T Consensus 66 i~~~l~aa~~~vw~dprNv~Aa~iy~lSGGnP~vlr~L~~~d~~~-~------~d~~L~~g~laY~~Gr~~~a~~~La~i 138 (421)
T PRK12798 66 IDERLRAADPEVWDDPRNVDAALIYLLSGGNPATLRKLLARDKLG-N------FDQRLADGALAYLSGRGREARKLLAGV 138 (421)
T ss_pred HHHHHHhCCHHHhCCccchhHHHhhHhcCCCHHHHHHHHHcCCCC-h------hhHHHHHHHHHHHcCCHHHHHHHhhcC
Confidence 333444445666778888888888888889998776655433221 1 12333333322 57888888888888
Q ss_pred hcCCCCCchHHHHHHHH-HHHhcCCHHHHHHHHHHhHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHchhhcC
Q 041936 102 KTRPDLQNERFHAHSII-LYGQANMTEHAVRTFKEMDEHKLRHSV----GAFNALLLALTIAKDYKEVKRVFIEFPKTYG 176 (402)
Q Consensus 102 ~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 176 (402)
.....++...-+..|+. ......++.+|+.+|++..=. -|.+ .....-+......|+.+++..+-.....++.
T Consensus 139 ~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~ 216 (421)
T PRK12798 139 APEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFR 216 (421)
T ss_pred ChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhc
Confidence 75555666666666665 345567888999999886533 2333 2333344566778888887776666655543
Q ss_pred CCCCHHHHH-HHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--
Q 041936 177 IKPDLDTYN-RVIKAFCESSD---SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG-- 250 (402)
Q Consensus 177 ~~p~~~~~~-~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 250 (402)
..|=..-|. .+...+.+.++ .+....++..|.. .--...|..+...-.-.|+.+-|.-.-++.....-..+
T Consensus 217 ~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~ 293 (421)
T PRK12798 217 HSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFASERALKLADPDSAD 293 (421)
T ss_pred cCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcc
Confidence 333222222 22223333332 2232333333321 11245677777777778888777766666655331111
Q ss_pred ---hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 251 ---VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 251 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
...|..... .-..+++++.+.+..+-.....|
T Consensus 294 ~~ra~LY~aaa~--v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 294 AARARLYRGAAL--VASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred hHHHHHHHHHHc--cCcccHHHHHHHHhcCChhhCCh
Confidence 111222211 12345666666666655544443
No 455
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.84 E-value=79 Score=20.23 Aligned_cols=49 Identities=8% Similarity=0.094 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA 158 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (402)
....++.++..+++..-.++++..+.+..+.| .-+..+|-.-++.+++.
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34456666666666666777777777777666 35556665555555443
No 456
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.70 E-value=4e+02 Score=28.33 Aligned_cols=128 Identities=11% Similarity=0.104 Sum_probs=78.9
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhh--cCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCC-CCchHHHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAA--LTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPD-LQNERFHAHS 116 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 116 (402)
.-+..+++++...+.++.+.++-..+. ..+..+.-..+++.+.+.....|.+.+|.+.+-. .++ .....-...+
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---npdserrrdcLRql 1060 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---NPDSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---CCcHHHHHHHHHHH
Confidence 346789999999999999998886663 2333333355677888888888888887554433 222 1222345556
Q ss_pred HHHHHhcCCHHH------------HHH-HHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041936 117 IILYGQANMTEH------------AVR-TFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 117 i~~~~~~~~~~~------------A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 170 (402)
+.....+|..+. ... +++..-+.........|+.|-..+...+++.+|-.++-+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 666677776543 333 333322222223334566666677788888887766544
No 457
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=45.57 E-value=1.1e+02 Score=21.83 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=10.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHc
Q 041936 151 LLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~~ 171 (402)
++.-|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344455555555555555554
No 458
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.56 E-value=3.3e+02 Score=27.33 Aligned_cols=194 Identities=13% Similarity=0.191 Sum_probs=107.9
Q ss_pred chHHHHHHHhhc---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHH----------HHHHHHHHHHc
Q 041936 92 NGISQYLEELKT---RPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGA----------FNALLLALTIA 158 (402)
Q Consensus 92 ~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~ 158 (402)
++-..++.+|.. .+......+...++..|....+++..+++.+.++.. ||..- |...++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 445566777763 344556788888888999999999999999998763 43211 22222222345
Q ss_pred CCHHHHHHHHHHchhhcC-CCCCHHH-----HHH--HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 159 KDYKEVKRVFIEFPKTYG-IKPDLDT-----YNR--VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~-~~p~~~~-----~~~--li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
|+-++|+...-.+.+..| +.||... |.- +-+.|...+..+.|.++|++.-+. .|+..+--.+...+...|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhh
Confidence 777888887766655444 5677643 221 123445566678889999888764 455443222222222222
Q ss_pred C-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041936 231 K-YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFY 309 (402)
Q Consensus 231 ~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 309 (402)
+ ++.-+ +++..|+ .|-..+.+.|.+++..++|+-. + .+.+-.-.+++.+|.+.-
T Consensus 335 ~~Fens~----Elq~Igm--------kLn~LlgrKG~leklq~YWdV~----------~---y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 EHFENSL----ELQQIGM--------KLNSLLGRKGALEKLQEYWDVA----------T---YFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hhccchH----HHHHHHH--------HHHHHhhccchHHHHHHHHhHH----------H---hhhhhhhccCHHHHHHHH
Confidence 2 22222 2222221 1222345677776666665432 2 223334456667776666
Q ss_pred HHHHhC
Q 041936 310 RIMSNS 315 (402)
Q Consensus 310 ~~m~~~ 315 (402)
+.|.+.
T Consensus 390 e~mfKL 395 (1226)
T KOG4279|consen 390 EMMFKL 395 (1226)
T ss_pred HHHhcc
Confidence 666653
No 459
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.52 E-value=1.1e+02 Score=21.90 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=16.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666655
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.43 E-value=1.5e+02 Score=23.39 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=23.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
.++..+...++.-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3344444444455566666666665555555544444555555443
No 461
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.05 E-value=1.3e+02 Score=29.43 Aligned_cols=91 Identities=10% Similarity=0.099 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHccCChH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNS--GLSPNSSVYFTMVYFMCKGGDYE------TALGFCKESIAKGWVPNFTTMKSL 362 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 362 (402)
.++.+|...|++..+.++++.+... |-+.-...||..++.+.+.|.++ .+.+.++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7999999999999999999999876 33444567899999999999764 333334333 355688898888
Q ss_pred HHHHHcCCChHHHHHHHHHHHh
Q 041936 363 VTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
+.+-..--.-.-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7776553333334444444444
No 462
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=45.02 E-value=1.8e+02 Score=24.25 Aligned_cols=23 Identities=4% Similarity=0.134 Sum_probs=16.7
Q ss_pred HHhccCCHHHHHHHHHHHHHCCC
Q 041936 225 GFYKEEKYEDVNKVLQMMERYGM 247 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~ 247 (402)
=+...|+++.|+++.+.+++.|.
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCC
Confidence 34577788888888887777764
No 463
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.88 E-value=1.3e+02 Score=22.33 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=35.2
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRH-SVGAFNALLLALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 170 (402)
.|++.-+ .+.++|+.|...|+-. .+..|......+...|++++|.++|+.
T Consensus 74 ~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 74 KYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444333 8888888888776554 345677778888888888888888864
No 464
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.87 E-value=2.5e+02 Score=25.68 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=33.4
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHH--ccCCHHHHHHHHHHHHHC
Q 041936 225 GFYKEEKYEDVNKVLQMMERYGMKSGVS--MYNVRIHSLC--KLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 280 (402)
.+...+++..|.++++.+... ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345677788888888877776 444443 3333444433 345677777777776554
No 465
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=44.74 E-value=99 Score=21.09 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041936 202 SILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 202 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (402)
++|+-....|+..|..+|.+++..+...=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444555555555555554444444444444444443
No 466
>PRK09857 putative transposase; Provisional
Probab=44.69 E-value=2.1e+02 Score=24.93 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 355 (402)
.++......++.++..++++.+.+. ........-.+..-+...|.-+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333333445544445555444443 111222222334444444555556666666666665433
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.67 E-value=1.3e+02 Score=22.31 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 70 ESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRP-DLQNERFHAHSIILYGQANMTEHAVRTFKE 135 (402)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 135 (402)
..+-|......-+. ++. ..+.+.++|..|...+ ......+|..-...+...|++++|.++|+.
T Consensus 61 ~Y~nD~RylkiWi~-ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 61 RYKNDERYLKIWIK-YAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp GGTT-HHHHHHHHH-HHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH-HHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44445544444333 333 3348999999998544 455678899999999999999999999975
No 468
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.92 E-value=3e+02 Score=26.38 Aligned_cols=86 Identities=7% Similarity=0.020 Sum_probs=45.6
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------------CCCHhhHHHHHHHHhc
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSI-------------KPNASSFGALVAGFYK 228 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-------------~~~~~~~~~l~~~~~~ 228 (402)
++....+..+.+..|+..+......++... .|+...|..+++++...|- .++......++.++.
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~- 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA- 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 334444444445556666655555554432 4677777777766554320 111222233333333
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 041936 229 EEKYEDVNKVLQMMERYGMKSG 250 (402)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~ 250 (402)
.++.+.+..+++.+...|..+.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3667777777777777775553
No 469
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.60 E-value=3e+02 Score=26.32 Aligned_cols=86 Identities=10% Similarity=0.104 Sum_probs=49.7
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------------HhhHHHHHHHHhc
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN------------ASSFGALVAGFYK 228 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~------------~~~~~~l~~~~~~ 228 (402)
.++...++....+..|+..+......++... .|++..+...++.+...+-..+ ......+++++ .
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~ 253 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-A 253 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-H
Confidence 4455556665555567666666665555533 4777777777776554331111 11233344444 4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 041936 229 EEKYEDVNKVLQMMERYGMKS 249 (402)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~ 249 (402)
.++.++|..+++.+...|..|
T Consensus 254 ~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 254 QGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 477888888888887777444
No 470
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.23 E-value=1.2e+02 Score=21.44 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 306 KKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 306 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
++.+++....+....+-....|.-.|.+.|+.+.+.+-|+.=
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 344444444433222223334444566666666666655543
No 471
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.22 E-value=2.5e+02 Score=25.29 Aligned_cols=218 Identities=11% Similarity=0.071 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhh----cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhH-h---CC--CCCCHHH
Q 041936 78 FSIAINKLSEANYFNGISQYLEELK----TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMD-E---HK--LRHSVGA 147 (402)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~-~---~~--~~~~~~~ 147 (402)
.+.+-.++.+.+.......+..+.. .... .-...+..++..+.+.+++.-++..++.-. + .+ ++|....
T Consensus 105 c~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~-qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL 183 (422)
T KOG2582|consen 105 CHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG-QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFL 183 (422)
T ss_pred HHHHHHHHHhcCCccccchHHHHHHHHhccCcc-chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHH
Confidence 3444555555555555444444433 2111 223456667777888888877776665422 1 11 1221111
Q ss_pred HHHH--HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHH--------HHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 041936 148 FNAL--LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR--------VIKAFCESSDSSSAYSILAEMDRKSIKPNAS 217 (402)
Q Consensus 148 ~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~--------li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 217 (402)
.... .-.|...++++.|.-+|+..+. .|....-.. ++-.....|+....-+.-......-.+|-..
T Consensus 184 ~Y~yYgg~iciglk~fe~Al~~~e~~v~----~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~ 259 (422)
T KOG2582|consen 184 LYLYYGGMICIGLKRFERALYLLEICVT----TPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSN 259 (422)
T ss_pred HHHHhcceeeeccccHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCc
Confidence 1111 0124456899999999998863 233222222 2333334454411111000111111233334
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH----H
Q 041936 218 SFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHF----I 293 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l----~ 293 (402)
.|..++++|.+...-+ .+.+..+-. ..+.+-++..-+......+....+.-=..||.++ |
T Consensus 260 pY~ef~~~Y~~~~~~e-Lr~lVk~~~---------------~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dI 323 (422)
T KOG2582|consen 260 PYHEFLNVYLKDSSTE-LRTLVKKHS---------------ERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDI 323 (422)
T ss_pred hHHHHHHHHhcCCcHH-HHHHHHHHH---------------HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5666777766543322 222221111 1233445556666666666555333334455544 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 041936 294 YGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
...++.+..++|.+..-.|.+.|
T Consensus 324 A~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 324 ASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHhcchHHHHHHHHHHhccC
Confidence 33345667777777777777764
No 472
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.85 E-value=76 Score=31.98 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=50.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 041936 44 AALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQA 123 (402)
Q Consensus 44 ~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 123 (402)
..+..|...|-|+-|+.+.+.-..+ ...+...|+++.|++.-.++ .+...|..|......+
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHh
Confidence 4666777777777777765433222 22356678888887665553 2456777888888888
Q ss_pred CCHHHHHHHHHHhHh
Q 041936 124 NMTEHAVRTFKEMDE 138 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~ 138 (402)
|+.+-|+..|+..+.
T Consensus 686 gn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKN 700 (1202)
T ss_pred cchHHHHHHHHHhhh
Confidence 888888877777653
No 473
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.82 E-value=1.8e+02 Score=26.00 Aligned_cols=81 Identities=14% Similarity=0.055 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPD--LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (402)
++.--+...-..---+++..+++.+...-. ..-..+|..++......|.++.++.+|++....|-.|-...-..++..
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 445555544444456678888887763211 122356777788888889999999999999888888877777777777
Q ss_pred HHH
Q 041936 155 LTI 157 (402)
Q Consensus 155 ~~~ 157 (402)
+-.
T Consensus 185 L~~ 187 (353)
T PF15297_consen 185 LKM 187 (353)
T ss_pred HHh
Confidence 653
No 474
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.77 E-value=2e+02 Score=27.65 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=16.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
|-.++.++...++.+.|..++.++.+.
T Consensus 211 yf~v~k~vv~LnDa~~a~~L~~kL~~e 237 (926)
T COG5116 211 YFYVIKAVVYLNDAEKAKALIEKLVKE 237 (926)
T ss_pred EEEEeEEEEEeccHHHHHHHHHHHHhh
Confidence 444555566666666666666666554
No 475
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=42.75 E-value=4.1e+02 Score=27.58 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHccC
Q 041936 268 AEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS-GLSPNSSVYFTMVYFMCKGG 335 (402)
Q Consensus 268 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g 335 (402)
+.-.+.|.++..---.-|..++..-...+...|++..|.+++.++.+. |-.++...|..++..+...|
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 334445555443211225555555566666677777777777777663 45556666655555555554
No 476
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=42.26 E-value=2.2e+02 Score=24.34 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=24.0
Q ss_pred CCCCccchHHHHHHHhcCCChhHHHHHHHHhhcCC
Q 041936 35 PLTSKDKTRAALTLLKSESNPEKILEICRAAALTP 69 (402)
Q Consensus 35 ~~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~ 69 (402)
....+..++.+++.+-..+....|+++.+....-+
T Consensus 78 ~~~~~l~L~~iL~~lL~~~~~~~a~~i~~~y~~l~ 112 (258)
T PF07064_consen 78 EIKTQLFLHHILRHLLRRNLDEEALEIASKYRSLP 112 (258)
T ss_pred ecCceechHHHHHHHHhcCCcHHHHHHHHHhccCC
Confidence 44556677777777777777777777776665443
No 477
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.93 E-value=1.6e+02 Score=22.52 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555544344444333333333333
No 478
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.93 E-value=1.2e+02 Score=21.68 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=7.0
Q ss_pred HHHccCCHHHHHHHHHH
Q 041936 260 SLCKLRKCAEAKALLDE 276 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~ 276 (402)
-|...|+.++|..-+++
T Consensus 11 ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 11 EYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHH
Confidence 33344444444444444
No 479
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.90 E-value=2.1e+02 Score=24.07 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 284 PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 284 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
|.+.....++..|. .+++++|.+++.++-+.|..|
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 44444444444332 234555555555555555544
No 480
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.86 E-value=2.9e+02 Score=25.69 Aligned_cols=244 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK 228 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (402)
|-.+.-|...|+..+|.+..+++ ..+.......-++....+.-..|....-.+...+...+...-+.+..++.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L------~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr 291 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIREL------GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHh------CCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchh
Q ss_pred cCC--------HHHHHHHHHHHHHCCCCCC-----------------------hhhHHHHHHHHHccCCHHHHHHHHHHH
Q 041936 229 EEK--------YEDVNKVLQMMERYGMKSG-----------------------VSMYNVRIHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 229 ~~~--------~~~a~~~~~~~~~~~~~~~-----------------------~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (402)
.+. ...|...|+.+....+.-+ ......+|+-|...|+..+..+.++++
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHc
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH--------------------------------
Q 041936 278 LSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYF-------------------------------- 325 (402)
Q Consensus 278 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------------------------------- 325 (402)
-.....|-...+..-+..=.+...-+.|..++..+.-.-+.+....-.
T Consensus 372 n~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViD 451 (645)
T KOG0403|consen 372 NLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVID 451 (645)
T ss_pred CCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhh
Q ss_pred --------------------------------------------------------------HHHHHHHccCChHHHHHH
Q 041936 326 --------------------------------------------------------------TMVYFMCKGGDYETALGF 343 (402)
Q Consensus 326 --------------------------------------------------------------~l~~~~~~~g~~~~a~~~ 343 (402)
.|+.-|...|+..+|.++
T Consensus 452 dVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~C 531 (645)
T KOG0403|consen 452 DVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHC 531 (645)
T ss_pred cccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHH
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcCCC
Q 041936 344 CKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402 (402)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 402 (402)
++++-- .+-.....+.+++.+.-+.|+-+..+.+++..-.. ..+|-+-|-+||-|
T Consensus 532 ikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s---glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 532 IKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS---GLITTNQMTKGFER 586 (645)
T ss_pred HHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CceeHHHhhhhhhh
No 481
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.83 E-value=1.6e+02 Score=22.51 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=38.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChH
Q 041936 275 DEMLSKGMKPNSVTYSHFIYGFCKD-GNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYE 338 (402)
Q Consensus 275 ~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 338 (402)
+.+.+.|.+++.. -..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455566665443 23344555443 456678888888887776666666555666666666543
No 482
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=41.60 E-value=1.1e+02 Score=20.83 Aligned_cols=44 Identities=5% Similarity=-0.059 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 342 GFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
++|+-....|+..|+..|..+++.+.-.=-++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 45555555566666666666666655555566666666666553
No 483
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.43 E-value=3.2e+02 Score=25.95 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=51.4
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
+...+.+..+.+..|+..+......++.. ..|+...|+.+++++...+ ....++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l--------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI--------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh---------------
Confidence 34445555554555666666655555542 3577777777777654321 0112222221111
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN 285 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 285 (402)
|. .+...+..++.+....+....|+.++.++.+.|..|.
T Consensus 244 ----g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 244 ----GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred ----CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 21 2344444555555444445567777777777776554
No 484
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.14 E-value=92 Score=19.65 Aligned_cols=15 Identities=40% Similarity=0.322 Sum_probs=5.9
Q ss_pred cCCcchHHHHHHHhh
Q 041936 88 ANYFNGISQYLEELK 102 (402)
Q Consensus 88 ~~~~~~a~~~~~~~~ 102 (402)
.|++=+|-++++.+=
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 344444444444433
No 485
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=41.05 E-value=2.4e+02 Score=24.36 Aligned_cols=116 Identities=9% Similarity=-0.011 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc-----C
Q 041936 160 DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE----SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKE-----E 230 (402)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----~ 230 (402)
+..+|.++|....+. | .......|...|.. ..+..+|..+|++..+.|..+...+...+...|..- -
T Consensus 92 ~~~~A~~~~~~~a~~-g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAAD-G---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhc-c---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 455666666644221 2 22233334444443 336677777777777776443222233343333332 1
Q ss_pred --CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCC
Q 041936 231 --KYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK----LRKCAEAKALLDEMLSKGM 282 (402)
Q Consensus 231 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 282 (402)
+...|...|.+....+ +......+...|.. ..+..+|...|....+.|.
T Consensus 168 ~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 168 AYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2236777777776665 33333334444422 3366777777777777654
No 486
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.54 E-value=3.9e+02 Score=26.77 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=29.1
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.++....+..+.+..|+..+......+++.. .|++..+..+++++..
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 3455555655556566666666666666543 4777777777766554
No 487
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.29 E-value=50 Score=17.65 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHHhcCCCChhhHHH
Q 041936 371 KVSEAKELIGLVKEKFTKNVDTWNE 395 (402)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~ 395 (402)
.++.|..+|+..... .|++.+|-.
T Consensus 2 E~dRAR~IyeR~v~~-hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV-HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh-CCCchHHHH
Confidence 467788888887764 477777754
No 488
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.72 E-value=2.3e+02 Score=23.90 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=12.7
Q ss_pred HHHhCCCCCCHHhHH--HHHHHHHccCChHH
Q 041936 311 IMSNSGLSPNSSVYF--TMVYFMCKGGDYET 339 (402)
Q Consensus 311 ~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~ 339 (402)
-|.+--+.|...||. .+...+.+.|+++.
T Consensus 220 l~~~pvi~psgIty~ra~I~Ehl~rvghfdp 250 (284)
T KOG4642|consen 220 LMREPVITPSGITYDRADIEEHLQRVGHFDP 250 (284)
T ss_pred hhcCCccCccccchhHHHHHHHHHHhccCCc
Confidence 333334455555552 23334444444443
No 489
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=39.52 E-value=59 Score=30.09 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=49.8
Q ss_pred HHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 041936 83 NKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYK 162 (402)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 162 (402)
+.+...+.++.|..++.+++. -.+....++..-..++.+.+++..|+.-+....+.. +.....|-.-..++.+.+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~-ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE-LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh-cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 334455566666666666652 223333333333455666666666666666655543 222333333334444555556
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 163 EVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 163 ~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
+|...|+... .+.|+..-....+
T Consensus 90 ~A~~~l~~~~---~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 90 KALLDLEKVK---KLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHhh---hcCcCcHHHHHHH
Confidence 6666665553 2245444333333
No 490
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.32 E-value=79 Score=22.74 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=23.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 258 IHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
+..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 34444444445566666666665555555555455555555553
No 491
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=38.70 E-value=4.8e+02 Score=27.28 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=53.6
Q ss_pred HHHHhcCCChhHHHHHHHHhhcC-CCCCCCHH-HHHHHHHHH---HhcC---CcchHHHHHHHhhcCCCCCchHHHHHHH
Q 041936 46 LTLLKSESNPEKILEICRAAALT-PESHLDRL-AFSIAINKL---SEAN---YFNGISQYLEELKTRPDLQNERFHAHSI 117 (402)
Q Consensus 46 l~~l~~~~~~~~al~~~~~~~~~-~~~~~~~~-~~~~l~~~~---~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li 117 (402)
-+++-....+++|+.+++..... ||.+-..+ .|..-|..+ ...| .+++|+.-|+.+......|-+.. .-.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 559 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL--GKA 559 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH--hHH
Confidence 34555667788888888887633 33332222 222223333 2333 47778888888875444444433 333
Q ss_pred HHHHhcCCHHHHHHHHHHhHh
Q 041936 118 ILYGQANMTEHAVRTFKEMDE 138 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~ 138 (402)
.+|-+.|++++-++.+.-..+
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 458899999888877776554
No 492
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=38.01 E-value=2.2e+02 Score=23.07 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=10.3
Q ss_pred HHhcCCHHHHHHHHHHhH
Q 041936 120 YGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~ 137 (402)
....|++++|.+-++++.
T Consensus 39 ~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 39 LLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 445566666666655543
No 493
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.64 E-value=94 Score=22.34 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYET 339 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 339 (402)
.++..+...+..-.|.++++.+.+.+..++..|.-..+..+...|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3455555556666788888888877766676666666667777765543
No 494
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.36 E-value=21 Score=31.34 Aligned_cols=93 Identities=14% Similarity=-0.086 Sum_probs=60.9
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHH-HHHHHHHHHHhcCChh
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLD-TYNRVIKAFCESSDSS 198 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~ 198 (402)
....|.++.|++.|...++.+ ++....|..-.+++.+.+.+..|++=++...+ +.||.. -|-.--.+..-.|+|+
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchH
Confidence 345677888888888877766 56666666667777778888777777766543 244432 2333334444567888
Q ss_pred HHHHHHHHHHhCCCCCCH
Q 041936 199 SAYSILAEMDRKSIKPNA 216 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~ 216 (402)
+|...++...+.+..+..
T Consensus 200 ~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHHHhccccHHH
Confidence 888888877777654433
No 495
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.02 E-value=3.2e+02 Score=24.74 Aligned_cols=57 Identities=5% Similarity=-0.041 Sum_probs=32.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh-ccCCHHHHHHHHHHHHH
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFY-KEEKYEDVNKVLQMMER 244 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 244 (402)
|..+.+.|-+..|.++.+-+..-...-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3455566666777776666666543334545555555543 45566666666655443
No 496
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.79 E-value=1.4e+02 Score=20.51 Aligned_cols=65 Identities=11% Similarity=-0.058 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041936 106 DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRH-SVGAFNALLLALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 106 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 170 (402)
.|.+......+...+...|++++|++.+-.+.+..... +...-..++..+...|.-+....-+..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
No 497
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=36.18 E-value=1.3e+02 Score=22.53 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 041936 95 SQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRH 143 (402)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (402)
....+.....+......++..++--+...|+++.|+++.+...++|.+.
T Consensus 33 ~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~ 81 (132)
T PF05944_consen 33 LPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPM 81 (132)
T ss_pred HHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCc
No 498
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.12 E-value=34 Score=30.17 Aligned_cols=92 Identities=9% Similarity=0.036 Sum_probs=52.3
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhccCCHHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNA-SSFGALVAGFYKEEKYED 234 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~ 234 (402)
...|.++.|++.|...++.. ++....|..-.+.+.+.+++..|++=++...+. .||. .-|-.-..+-...|++++
T Consensus 125 ln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 34566777777776665432 444555555666666677777776666666554 2332 233333334445566777
Q ss_pred HHHHHHHHHHCCCCCCh
Q 041936 235 VNKVLQMMERYGMKSGV 251 (402)
Q Consensus 235 a~~~~~~~~~~~~~~~~ 251 (402)
|...+....+.++.+..
T Consensus 201 aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHHhccccHHH
Confidence 77777666666544443
No 499
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.88 E-value=4.4e+02 Score=25.97 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=58.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC------HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 297 CKDGNFEEAKKFYRIMSNSGLSPN------SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
.+..++..+.++|..-... +..| ......|-.+|.+..+.+.|.++++++.+.+ +.++.+--.+..+....|
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhc
Confidence 3556777777777654432 1111 2345566667778888889999988888764 445555555667777888
Q ss_pred ChHHHHHHHHHHHhc
Q 041936 371 KVSEAKELIGLVKEK 385 (402)
Q Consensus 371 ~~~~a~~~~~~~~~~ 385 (402)
.-++|+.+.......
T Consensus 443 ~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSS 457 (872)
T ss_pred chHHHHHHHHHHHhh
Confidence 888888887776654
No 500
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=35.77 E-value=97 Score=27.09 Aligned_cols=65 Identities=9% Similarity=0.149 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH-HHHHHHccCChHHHHHHHHHHHhC
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFT-MVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
|+..|...+....+.+.+.+.-.++.+..... +.|+..|.. --.-|...++++.+..+|.+.++.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 44455544444445556666666666666542 223433322 222334456666666666655554
Done!