Query 041936
Match_columns 402
No_of_seqs 578 out of 2465
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 21:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.4E-33 8.1E-38 259.1 24.9 204 129-333 9-222 (501)
2 2xpi_A Anaphase-promoting comp 100.0 2.4E-31 8.3E-36 254.5 39.2 354 41-401 152-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.3E-33 1.1E-37 258.2 24.3 208 92-300 7-224 (501)
4 2xpi_A Anaphase-promoting comp 100.0 1.5E-30 5.1E-35 249.0 38.9 356 37-400 82-560 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-26 7.8E-31 208.2 39.2 345 44-399 38-382 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-26 4.9E-31 209.5 37.4 342 48-400 8-349 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 4.1E-24 1.4E-28 197.1 35.3 314 73-397 24-370 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 9E-23 3.1E-27 188.1 35.9 329 44-384 31-408 (450)
9 3ieg_A DNAJ homolog subfamily 99.9 1.4E-21 4.8E-26 174.2 36.6 316 74-399 2-349 (359)
10 2gw1_A Mitochondrial precursor 99.9 2.9E-22 1E-26 187.8 33.5 241 147-394 239-487 (514)
11 3hym_B Cell division cycle pro 99.9 4.4E-21 1.5E-25 169.1 29.8 282 77-366 24-314 (330)
12 2gw1_A Mitochondrial precursor 99.9 1.1E-20 3.8E-25 177.0 30.9 345 46-400 13-459 (514)
13 3fp2_A TPR repeat-containing p 99.9 5.7E-20 2E-24 173.2 35.3 336 45-391 31-497 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 2E-19 6.7E-24 160.3 35.0 312 45-367 9-351 (359)
15 3hym_B Cell division cycle pro 99.9 4E-20 1.4E-24 162.9 29.2 287 107-400 19-314 (330)
16 3fp2_A TPR repeat-containing p 99.9 4.3E-19 1.5E-23 167.3 33.6 318 75-399 25-471 (537)
17 1fch_A Peroxisomal targeting s 99.9 7.6E-20 2.6E-24 163.9 26.1 293 86-384 36-358 (368)
18 1fch_A Peroxisomal targeting s 99.9 1.9E-19 6.4E-24 161.3 24.3 291 51-347 37-356 (368)
19 4eqf_A PEX5-related protein; a 99.9 1.1E-19 3.7E-24 162.8 22.4 267 109-381 64-352 (365)
20 3cv0_A Peroxisome targeting si 99.8 2.2E-18 7.6E-23 151.5 27.2 267 111-384 22-314 (327)
21 4eqf_A PEX5-related protein; a 99.8 6E-19 2.1E-23 158.0 22.1 266 74-346 64-352 (365)
22 3mkr_A Coatomer subunit epsilo 99.8 7.1E-18 2.4E-22 145.6 26.6 253 83-350 7-264 (291)
23 3cv0_A Peroxisome targeting si 99.8 2.2E-18 7.5E-23 151.5 23.2 266 76-348 22-313 (327)
24 3mkr_A Coatomer subunit epsilo 99.8 1.7E-17 5.7E-22 143.3 25.5 256 119-391 8-270 (291)
25 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-19 4.2E-24 173.0 11.6 113 217-329 128-244 (1134)
26 1b89_A Protein (clathrin heavy 99.8 1.1E-18 3.6E-23 154.6 16.8 290 45-379 9-305 (449)
27 2xm6_A Protein corresponding t 99.8 2.2E-14 7.4E-19 133.6 42.8 308 52-385 56-432 (490)
28 3spa_A Mtrpol, DNA-directed RN 99.8 2.5E-19 8.7E-24 170.9 9.2 120 249-368 125-248 (1134)
29 2xm6_A Protein corresponding t 99.8 3.3E-14 1.1E-18 132.3 43.1 286 74-384 38-359 (490)
30 3uq3_A Heat shock protein STI1 99.8 2.9E-16 1E-20 132.9 24.3 238 147-399 7-256 (258)
31 4g1t_A Interferon-induced prot 99.7 2.6E-15 8.9E-20 139.1 30.5 339 42-386 54-460 (472)
32 1b89_A Protein (clathrin heavy 99.7 1.6E-17 5.6E-22 147.1 13.6 251 86-380 14-264 (449)
33 2ooe_A Cleavage stimulation fa 99.7 5.3E-14 1.8E-18 132.3 36.3 345 42-397 16-470 (530)
34 2pl2_A Hypothetical conserved 99.7 8.6E-16 2.9E-20 126.7 20.9 198 180-383 4-212 (217)
35 1xi4_A Clathrin heavy chain; a 99.7 5.4E-14 1.8E-18 138.9 35.5 322 36-401 982-1325(1630)
36 2ho1_A Type 4 fimbrial biogene 99.7 9E-15 3.1E-19 123.5 26.5 210 181-394 37-247 (252)
37 3uq3_A Heat shock protein STI1 99.7 3.2E-15 1.1E-19 126.4 23.7 225 112-350 7-236 (258)
38 2pl2_A Hypothetical conserved 99.7 1.6E-15 5.4E-20 125.1 20.9 195 111-312 6-211 (217)
39 3u4t_A TPR repeat-containing p 99.7 3E-15 1E-19 127.9 23.4 241 151-396 9-261 (272)
40 1ouv_A Conserved hypothetical 99.7 5E-14 1.7E-18 120.5 31.0 222 110-350 6-251 (273)
41 2vq2_A PILW, putative fimbrial 99.7 1.9E-14 6.6E-19 118.9 25.9 210 181-394 8-220 (225)
42 2ooe_A Cleavage stimulation fa 99.7 7.8E-13 2.7E-17 124.3 39.5 340 39-387 46-494 (530)
43 3u4t_A TPR repeat-containing p 99.7 6.8E-15 2.3E-19 125.7 23.3 244 113-362 6-261 (272)
44 2q7f_A YRRB protein; TPR, prot 99.7 4E-15 1.4E-19 124.7 21.1 211 181-396 23-233 (243)
45 4g1t_A Interferon-induced prot 99.7 4.8E-13 1.6E-17 123.8 36.6 307 73-385 49-401 (472)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.3E-15 4.3E-20 130.4 17.6 183 89-278 19-204 (275)
47 2vq2_A PILW, putative fimbrial 99.7 4.7E-14 1.6E-18 116.6 26.4 201 109-313 7-209 (225)
48 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.5E-15 1.2E-19 127.6 20.1 248 121-379 16-269 (275)
49 1ouv_A Conserved hypothetical 99.7 2.4E-13 8.1E-18 116.3 31.3 229 143-390 4-256 (273)
50 2ho1_A Type 4 fimbrial biogene 99.7 2.9E-14 1E-18 120.3 25.3 200 76-280 38-238 (252)
51 2h6f_A Protein farnesyltransfe 99.7 9.7E-15 3.3E-19 130.3 23.2 234 109-350 96-348 (382)
52 2h6f_A Protein farnesyltransfe 99.7 2E-14 6.9E-19 128.3 25.0 232 75-314 97-347 (382)
53 2q7f_A YRRB protein; TPR, prot 99.7 9.2E-15 3.2E-19 122.5 20.3 201 74-280 22-222 (243)
54 1xi4_A Clathrin heavy chain; a 99.6 9.2E-13 3.2E-17 130.3 33.3 288 42-381 1052-1341(1630)
55 4a1s_A PINS, partner of inscut 99.6 1.4E-14 4.7E-19 131.7 18.3 133 253-385 225-372 (411)
56 3sf4_A G-protein-signaling mod 99.6 7.6E-15 2.6E-19 132.9 16.5 299 73-372 7-363 (406)
57 4a1s_A PINS, partner of inscut 99.6 2.4E-14 8.1E-19 130.1 18.4 274 76-350 49-372 (411)
58 3sf4_A G-protein-signaling mod 99.6 7.7E-14 2.6E-18 126.3 20.0 276 109-385 8-336 (406)
59 3ro2_A PINS homolog, G-protein 99.6 2.9E-14 1E-18 125.3 16.7 133 253-385 185-332 (338)
60 2ond_A Cleavage stimulation fa 99.6 4.3E-12 1.5E-16 110.5 29.4 217 127-350 33-270 (308)
61 3ro2_A PINS homolog, G-protein 99.6 1.1E-13 3.8E-18 121.5 19.1 275 75-350 5-332 (338)
62 3ulq_A Response regulator aspa 99.6 5.2E-13 1.8E-17 120.2 22.8 297 85-385 22-368 (383)
63 3vtx_A MAMA; tetratricopeptide 99.6 1.4E-12 4.9E-17 104.3 21.8 167 109-280 4-170 (184)
64 3vtx_A MAMA; tetratricopeptide 99.5 3E-13 1E-17 108.3 17.2 166 216-385 5-170 (184)
65 2ond_A Cleavage stimulation fa 99.5 8.8E-12 3E-16 108.5 27.7 217 92-315 33-270 (308)
66 3nf1_A KLC 1, kinesin light ch 99.5 6.4E-14 2.2E-18 121.9 13.0 170 110-279 27-223 (311)
67 4abn_A Tetratricopeptide repea 99.5 3.5E-13 1.2E-17 124.6 18.3 192 109-307 101-313 (474)
68 3e4b_A ALGK; tetratricopeptide 99.5 1.3E-12 4.6E-17 119.9 21.2 313 47-391 11-393 (452)
69 3ulq_A Response regulator aspa 99.5 2.8E-12 9.4E-17 115.4 22.8 305 41-349 15-367 (383)
70 3q15_A PSP28, response regulat 99.5 4.9E-12 1.7E-16 113.5 23.9 311 71-384 6-364 (378)
71 4abn_A Tetratricopeptide repea 99.5 8.7E-13 3E-17 121.9 19.4 214 125-345 83-316 (474)
72 3nf1_A KLC 1, kinesin light ch 99.5 1.6E-13 5.5E-18 119.3 13.2 171 74-244 26-223 (311)
73 3e4b_A ALGK; tetratricopeptide 99.5 9.1E-12 3.1E-16 114.3 25.4 250 114-385 145-421 (452)
74 1hz4_A MALT regulatory protein 99.5 2.8E-11 9.5E-16 108.3 27.4 303 78-388 17-352 (373)
75 3as5_A MAMA; tetratricopeptide 99.4 2E-11 7E-16 97.2 20.1 158 115-277 13-170 (186)
76 1hz4_A MALT regulatory protein 99.4 8.1E-11 2.8E-15 105.3 26.0 266 49-315 24-322 (373)
77 3q15_A PSP28, response regulat 99.4 2.2E-11 7.7E-16 109.2 22.1 303 42-349 16-364 (378)
78 3as5_A MAMA; tetratricopeptide 99.4 4.1E-11 1.4E-15 95.4 20.2 166 75-245 8-173 (186)
79 4i17_A Hypothetical protein; T 99.4 5.2E-11 1.8E-15 98.7 20.2 208 178-397 4-221 (228)
80 4gyw_A UDP-N-acetylglucosamine 99.4 2.6E-11 8.8E-16 116.8 20.1 167 108-279 7-173 (723)
81 4gyw_A UDP-N-acetylglucosamine 99.4 2.8E-11 9.6E-16 116.5 19.5 166 180-349 8-173 (723)
82 3edt_B KLC 2, kinesin light ch 99.4 1.4E-11 5E-16 105.2 14.8 157 87-243 13-196 (283)
83 4i17_A Hypothetical protein; T 99.4 2.1E-10 7.1E-15 95.0 21.1 207 142-362 4-220 (228)
84 3edt_B KLC 2, kinesin light ch 99.3 2.5E-11 8.6E-16 103.7 14.1 156 54-210 23-198 (283)
85 4e6h_A MRNA 3'-END-processing 99.3 5.6E-09 1.9E-13 99.5 31.2 322 73-397 64-511 (679)
86 4e6h_A MRNA 3'-END-processing 99.3 4.5E-08 1.5E-12 93.3 35.0 204 184-389 346-574 (679)
87 3mv2_B Coatomer subunit epsilo 99.3 3.5E-09 1.2E-13 90.0 23.5 245 82-351 20-283 (310)
88 1qqe_A Vesicular transport pro 99.2 9.9E-10 3.4E-14 94.7 20.2 193 154-348 46-267 (292)
89 3mv2_B Coatomer subunit epsilo 99.2 1.3E-08 4.4E-13 86.5 24.1 240 51-315 25-282 (310)
90 3qky_A Outer membrane assembly 99.2 2.1E-09 7E-14 91.0 19.2 99 111-210 16-126 (261)
91 2fo7_A Synthetic consensus TPR 99.2 2.2E-09 7.6E-14 80.2 17.3 129 254-385 4-132 (136)
92 1qqe_A Vesicular transport pro 99.2 6E-10 2.1E-14 96.0 15.6 208 160-385 32-269 (292)
93 2fo7_A Synthetic consensus TPR 99.2 3.1E-09 1.1E-13 79.3 17.4 127 114-244 5-131 (136)
94 3qky_A Outer membrane assembly 99.2 3.8E-09 1.3E-13 89.3 18.9 188 142-350 12-224 (261)
95 3dra_A Protein farnesyltransfe 99.2 3.7E-08 1.3E-12 84.5 25.0 168 230-400 124-303 (306)
96 3urz_A Uncharacterized protein 99.1 3.1E-09 1.1E-13 86.5 16.7 23 117-139 11-33 (208)
97 2pzi_A Probable serine/threoni 99.1 1.2E-09 4.2E-14 105.4 16.0 173 121-301 402-583 (681)
98 2r5s_A Uncharacterized protein 99.1 2.6E-09 8.7E-14 84.5 14.9 161 113-278 9-171 (176)
99 3urz_A Uncharacterized protein 99.1 4.8E-09 1.7E-13 85.4 16.5 161 79-245 8-186 (208)
100 2pzi_A Probable serine/threoni 99.1 1.3E-09 4.5E-14 105.2 15.0 175 86-266 402-583 (681)
101 3qou_A Protein YBBN; thioredox 99.1 7.5E-09 2.6E-13 88.8 18.3 164 109-277 116-281 (287)
102 3rjv_A Putative SEL1 repeat pr 99.1 2.7E-08 9.3E-13 81.2 20.8 176 163-351 4-198 (212)
103 2vsy_A XCC0866; transferase, g 99.1 4.4E-09 1.5E-13 99.6 17.6 164 194-362 2-168 (568)
104 3dra_A Protein farnesyltransfe 99.1 2.3E-07 7.9E-12 79.5 26.3 230 127-362 50-299 (306)
105 3rjv_A Putative SEL1 repeat pr 99.1 4.8E-08 1.6E-12 79.7 20.6 177 128-317 4-199 (212)
106 2vsy_A XCC0866; transferase, g 99.0 8.4E-09 2.9E-13 97.7 18.2 153 89-246 3-158 (568)
107 4ga2_A E3 SUMO-protein ligase 99.0 1.7E-09 5.7E-14 83.1 10.8 143 224-370 5-148 (150)
108 2yhc_A BAMD, UPF0169 lipoprote 99.0 8.2E-08 2.8E-12 79.1 21.4 61 256-316 152-214 (225)
109 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.6E-08 1.6E-12 80.7 19.8 204 111-351 5-214 (225)
110 2r5s_A Uncharacterized protein 99.0 9.1E-09 3.1E-13 81.3 14.9 161 148-313 9-171 (176)
111 4ga2_A E3 SUMO-protein ligase 99.0 2.5E-09 8.6E-14 82.1 11.2 139 87-230 9-148 (150)
112 3qou_A Protein YBBN; thioredox 99.0 1.9E-08 6.5E-13 86.3 16.3 167 142-313 114-282 (287)
113 2uy1_A Cleavage stimulation fa 99.0 3.1E-06 1E-10 78.2 31.7 324 39-385 15-413 (493)
114 2ifu_A Gamma-SNAP; membrane fu 99.0 5.4E-08 1.8E-12 84.4 18.6 227 88-342 4-253 (307)
115 3u3w_A Transcriptional activat 98.9 2E-07 6.8E-12 80.2 21.5 92 152-243 82-182 (293)
116 2ifu_A Gamma-SNAP; membrane fu 98.9 3.7E-08 1.3E-12 85.4 16.5 228 122-378 3-254 (307)
117 4gco_A Protein STI-1; structur 98.9 6.6E-08 2.3E-12 71.6 14.6 111 287-399 14-124 (126)
118 3u3w_A Transcriptional activat 98.9 1.1E-06 3.9E-11 75.4 24.3 162 223-384 82-265 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.1E-07 1E-11 74.7 19.3 122 152-280 13-150 (213)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.7E-07 9.4E-12 75.0 18.3 130 182-316 7-151 (213)
121 3q7a_A Farnesyltransferase alp 98.8 1.4E-06 4.9E-11 75.5 23.0 254 121-397 65-344 (349)
122 3q7a_A Farnesyltransferase alp 98.8 3.9E-06 1.3E-10 72.8 25.0 184 78-267 57-258 (349)
123 2qfc_A PLCR protein; TPR, HTH, 98.8 5.2E-07 1.8E-11 77.5 19.1 163 115-278 80-264 (293)
124 2qfc_A PLCR protein; TPR, HTH, 98.8 1.5E-06 5.3E-11 74.6 21.5 166 183-348 77-264 (293)
125 4gco_A Protein STI-1; structur 98.8 2.3E-07 7.8E-12 68.6 13.8 96 112-210 15-110 (126)
126 1a17_A Serine/threonine protei 98.8 3.9E-07 1.3E-11 70.6 15.8 126 113-242 16-143 (166)
127 1a17_A Serine/threonine protei 98.8 2.5E-07 8.5E-12 71.8 14.0 130 76-209 14-145 (166)
128 3gyz_A Chaperone protein IPGC; 98.7 5E-07 1.7E-11 69.0 14.9 100 108-210 34-133 (151)
129 1na0_A Designed protein CTPR3; 98.7 5.7E-07 1.9E-11 65.8 14.9 95 112-209 11-105 (125)
130 2lni_A Stress-induced-phosphop 98.7 5.8E-07 2E-11 66.7 14.7 98 74-173 15-112 (133)
131 2c2l_A CHIP, carboxy terminus 98.7 2.1E-07 7.3E-12 79.4 13.8 193 110-315 4-199 (281)
132 2c2l_A CHIP, carboxy terminus 98.7 6.5E-08 2.2E-12 82.7 10.3 97 145-244 4-100 (281)
133 3gw4_A Uncharacterized protein 98.7 1.8E-07 6.3E-12 75.3 12.5 121 122-243 4-134 (203)
134 2lni_A Stress-induced-phosphop 98.7 5.3E-07 1.8E-11 66.9 14.1 118 107-228 13-130 (133)
135 2e2e_A Formate-dependent nitri 98.7 2.3E-07 8E-12 73.1 12.5 119 123-245 23-144 (177)
136 3gw4_A Uncharacterized protein 98.7 1.7E-07 5.9E-12 75.5 11.9 156 193-349 4-175 (203)
137 2vyi_A SGTA protein; chaperone 98.7 4.7E-07 1.6E-11 66.8 13.5 116 111-230 13-128 (131)
138 4f3v_A ESX-1 secretion system 98.7 5.3E-07 1.8E-11 75.6 14.6 136 257-396 108-247 (282)
139 3gyz_A Chaperone protein IPGC; 98.7 6.2E-07 2.1E-11 68.5 13.9 96 288-385 38-133 (151)
140 1na0_A Designed protein CTPR3; 98.7 6E-07 2.1E-11 65.6 13.5 96 252-349 10-105 (125)
141 2e2e_A Formate-dependent nitri 98.7 2.9E-07 9.8E-12 72.6 12.1 121 86-210 21-144 (177)
142 2vgx_A Chaperone SYCD; alterna 98.7 1.7E-07 5.7E-12 71.6 10.3 99 250-350 20-118 (148)
143 2uy1_A Cleavage stimulation fa 98.7 1.1E-05 3.7E-10 74.5 24.2 198 76-280 16-242 (493)
144 4f3v_A ESX-1 secretion system 98.6 1.2E-06 4.1E-11 73.5 15.7 51 117-169 109-159 (282)
145 4b4t_Q 26S proteasome regulato 98.6 1.9E-05 6.4E-10 71.7 25.1 95 218-312 137-242 (434)
146 2vgx_A Chaperone SYCD; alterna 98.6 3E-07 1E-11 70.2 11.1 98 109-209 20-117 (148)
147 2vyi_A SGTA protein; chaperone 98.6 9.2E-07 3.1E-11 65.2 13.5 120 74-197 11-130 (131)
148 3upv_A Heat shock protein STI1 98.6 8.6E-07 3E-11 65.4 12.7 97 288-386 6-102 (126)
149 3dss_A Geranylgeranyl transfer 98.6 5.5E-05 1.9E-09 65.3 25.0 45 127-172 91-137 (331)
150 1elw_A TPR1-domain of HOP; HOP 98.6 2E-06 6.7E-11 62.1 13.7 107 288-396 6-112 (118)
151 1p5q_A FKBP52, FK506-binding p 98.6 1.3E-06 4.3E-11 76.7 14.4 124 215-340 146-283 (336)
152 2fbn_A 70 kDa peptidylprolyl i 98.6 8.3E-08 2.8E-12 77.3 6.2 59 219-278 91-149 (198)
153 1p5q_A FKBP52, FK506-binding p 98.6 1.5E-06 5.2E-11 76.2 14.7 95 217-313 197-292 (336)
154 2fbn_A 70 kDa peptidylprolyl i 98.5 2.2E-07 7.4E-12 74.8 8.4 96 252-349 89-185 (198)
155 1elw_A TPR1-domain of HOP; HOP 98.5 6.3E-06 2.1E-10 59.4 15.7 96 112-210 6-101 (118)
156 2xcb_A PCRH, regulatory protei 98.5 1.5E-06 5.2E-11 65.6 12.4 97 252-350 19-115 (142)
157 2dba_A Smooth muscle cell asso 98.5 3.9E-06 1.3E-10 63.5 14.5 106 287-395 29-138 (148)
158 2xcb_A PCRH, regulatory protei 98.5 1.5E-06 5.2E-11 65.6 12.0 96 111-209 19-114 (142)
159 3upv_A Heat shock protein STI1 98.5 4.4E-06 1.5E-10 61.5 13.9 94 113-209 7-100 (126)
160 2kck_A TPR repeat; tetratricop 98.5 2E-06 7E-11 61.4 11.8 98 288-387 8-108 (112)
161 3sz7_A HSC70 cochaperone (SGT) 98.5 2E-06 6.7E-11 66.8 12.5 99 250-350 10-108 (164)
162 4b4t_Q 26S proteasome regulato 98.5 9.7E-06 3.3E-10 73.6 18.8 166 184-349 58-244 (434)
163 2kck_A TPR repeat; tetratricop 98.5 2.3E-06 8E-11 61.1 11.9 97 111-210 7-106 (112)
164 3dss_A Geranylgeranyl transfer 98.5 0.0002 6.7E-09 61.8 25.6 234 122-365 41-318 (331)
165 3q49_B STIP1 homology and U bo 98.5 2.9E-06 1E-10 63.4 12.7 100 249-350 7-106 (137)
166 4gcn_A Protein STI-1; structur 98.5 3.3E-06 1.1E-10 62.4 12.2 59 219-278 11-69 (127)
167 3sz7_A HSC70 cochaperone (SGT) 98.5 3.2E-06 1.1E-10 65.6 12.7 99 74-174 10-108 (164)
168 4gcn_A Protein STI-1; structur 98.4 6.3E-06 2.2E-10 60.8 13.4 96 113-209 11-111 (127)
169 1elr_A TPR2A-domain of HOP; HO 98.4 2.5E-06 8.4E-11 62.9 11.2 99 111-210 5-108 (131)
170 3k9i_A BH0479 protein; putativ 98.4 9.7E-07 3.3E-11 64.2 8.7 88 87-175 2-91 (117)
171 3q49_B STIP1 homology and U bo 98.4 8E-06 2.7E-10 60.9 14.0 96 110-208 9-104 (137)
172 2dba_A Smooth muscle cell asso 98.4 1.9E-05 6.4E-10 59.6 15.5 94 112-209 30-127 (148)
173 2xev_A YBGF; tetratricopeptide 98.4 1.5E-05 5.3E-10 58.6 13.8 94 256-350 7-105 (129)
174 1elr_A TPR2A-domain of HOP; HO 98.4 3.8E-06 1.3E-10 61.8 10.4 112 75-190 4-121 (131)
175 1hxi_A PEX5, peroxisome target 98.3 7.5E-06 2.6E-10 59.8 11.2 93 115-210 22-114 (121)
176 1hxi_A PEX5, peroxisome target 98.3 5.2E-06 1.8E-10 60.7 10.2 93 291-385 22-114 (121)
177 3ro3_A PINS homolog, G-protein 98.3 4.2E-06 1.5E-10 64.1 9.0 97 288-384 51-157 (164)
178 3ro3_A PINS homolog, G-protein 98.3 7E-06 2.4E-10 62.9 10.2 131 112-242 11-155 (164)
179 2xev_A YBGF; tetratricopeptide 98.2 6.8E-05 2.3E-09 55.0 14.3 90 117-209 9-104 (129)
180 3k9i_A BH0479 protein; putativ 98.2 3E-06 1E-10 61.5 6.6 86 264-350 3-90 (117)
181 3rkv_A Putative peptidylprolyl 98.2 1.8E-05 6.2E-10 61.1 11.0 99 251-350 11-126 (162)
182 1wao_1 Serine/threonine protei 98.2 5.1E-06 1.8E-10 76.5 8.9 117 120-240 16-134 (477)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.8E-05 1.6E-09 69.7 14.6 121 110-234 268-403 (457)
184 1wao_1 Serine/threonine protei 98.1 1E-05 3.5E-10 74.5 10.1 119 83-205 14-134 (477)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 5.6E-05 1.9E-09 69.2 14.6 122 145-268 268-402 (457)
186 1dce_A Protein (RAB geranylger 98.1 0.00022 7.4E-09 67.0 18.3 131 198-332 46-189 (567)
187 1ihg_A Cyclophilin 40; ppiase 98.1 4.8E-05 1.6E-09 67.5 13.1 97 147-244 225-335 (370)
188 1ihg_A Cyclophilin 40; ppiase 98.1 3.8E-05 1.3E-09 68.1 12.5 90 144-236 272-361 (370)
189 3rkv_A Putative peptidylprolyl 98.1 5.2E-05 1.8E-09 58.4 11.8 98 76-174 12-126 (162)
190 1dce_A Protein (RAB geranylger 98.1 0.00022 7.7E-09 66.9 18.1 133 161-298 45-190 (567)
191 2if4_A ATFKBP42; FKBP-like, al 98.1 1.6E-05 5.3E-10 69.8 9.3 151 216-387 179-330 (338)
192 3n71_A Histone lysine methyltr 98.0 3.5E-05 1.2E-09 70.7 10.4 125 120-244 319-463 (490)
193 2hr2_A Hypothetical protein; a 98.0 5.9E-05 2E-09 57.1 9.8 62 323-385 59-131 (159)
194 3n71_A Histone lysine methyltr 98.0 4.3E-05 1.5E-09 70.1 10.8 127 84-210 318-464 (490)
195 2kat_A Uncharacterized protein 98.0 7E-05 2.4E-09 53.8 9.9 80 92-173 2-81 (115)
196 1klx_A Cysteine rich protein B 98.0 0.00037 1.3E-08 52.0 14.1 83 263-351 37-127 (138)
197 2if4_A ATFKBP42; FKBP-like, al 97.9 2.8E-05 9.4E-10 68.2 8.7 95 218-314 232-327 (338)
198 1klx_A Cysteine rich protein B 97.9 0.00039 1.3E-08 51.9 13.6 110 125-246 10-127 (138)
199 2hr2_A Hypothetical protein; a 97.9 0.00026 8.8E-09 53.6 12.1 60 113-172 14-84 (159)
200 2l6j_A TPR repeat-containing p 97.8 1.5E-05 5E-10 56.9 4.1 61 288-349 6-66 (111)
201 3ma5_A Tetratricopeptide repea 97.8 0.00011 3.9E-09 51.3 8.1 66 107-173 4-69 (100)
202 2l6j_A TPR repeat-containing p 97.8 3.2E-05 1.1E-09 55.1 5.3 61 111-172 5-65 (111)
203 1na3_A Designed protein CTPR2; 97.7 0.00053 1.8E-08 46.4 10.8 61 112-173 11-71 (91)
204 1na3_A Designed protein CTPR2; 97.7 0.00031 1.1E-08 47.6 9.1 62 288-350 11-72 (91)
205 2kat_A Uncharacterized protein 97.7 0.00064 2.2E-08 48.6 10.9 79 128-209 3-81 (115)
206 1zu2_A Mitochondrial import re 97.6 0.00023 7.9E-09 53.8 7.7 98 121-223 13-131 (158)
207 1zu2_A Mitochondrial import re 97.5 0.00024 8.1E-09 53.7 6.9 87 262-350 13-120 (158)
208 3ma5_A Tetratricopeptide repea 97.4 0.00066 2.2E-08 47.3 7.8 60 182-242 8-67 (100)
209 3mkq_A Coatomer beta'-subunit; 97.2 0.019 6.6E-07 56.4 18.4 154 83-276 607-761 (814)
210 3ly7_A Transcriptional activat 97.1 0.046 1.6E-06 47.5 16.9 73 214-290 275-347 (372)
211 2kc7_A BFR218_protein; tetratr 97.0 0.0029 9.9E-08 43.6 7.8 59 292-351 6-65 (99)
212 3qww_A SET and MYND domain-con 97.0 0.002 6.8E-08 58.0 8.3 64 146-209 341-410 (433)
213 3mkq_B Coatomer subunit alpha; 96.9 0.089 3E-06 40.3 16.6 100 120-241 15-114 (177)
214 3qwp_A SET and MYND domain-con 96.9 0.0051 1.7E-07 55.4 10.2 93 117-209 294-399 (429)
215 1wy6_A Hypothetical protein ST 96.9 0.067 2.3E-06 38.6 14.0 62 289-351 94-155 (172)
216 3mkq_A Coatomer beta'-subunit; 96.9 0.046 1.6E-06 53.7 17.7 151 51-242 611-762 (814)
217 3ly7_A Transcriptional activat 96.9 0.1 3.5E-06 45.3 17.3 74 248-325 274-347 (372)
218 3bee_A Putative YFRE protein; 96.8 0.012 4E-07 40.2 9.2 67 320-387 5-74 (93)
219 2kc7_A BFR218_protein; tetratr 96.8 0.016 5.4E-07 39.7 10.2 57 117-174 7-64 (99)
220 3qww_A SET and MYND domain-con 96.8 0.0066 2.2E-07 54.7 9.8 86 88-173 311-410 (433)
221 2v5f_A Prolyl 4-hydroxylase su 96.8 0.014 4.9E-07 40.7 9.7 66 285-350 4-75 (104)
222 3qwp_A SET and MYND domain-con 96.7 0.0071 2.4E-07 54.5 9.7 92 293-384 294-399 (429)
223 3u64_A Protein TP_0956; tetrat 96.7 0.21 7E-06 41.7 19.0 93 198-292 180-283 (301)
224 1wy6_A Hypothetical protein ST 96.7 0.095 3.3E-06 37.8 15.7 138 122-282 19-156 (172)
225 3mkq_B Coatomer subunit alpha; 96.6 0.063 2.2E-06 41.1 12.4 129 224-382 13-141 (177)
226 3bee_A Putative YFRE protein; 96.6 0.045 1.5E-06 37.2 10.7 64 109-173 5-71 (93)
227 1pc2_A Mitochondria fission pr 96.5 0.021 7.1E-07 42.6 9.3 82 267-350 14-100 (152)
228 2v5f_A Prolyl 4-hydroxylase su 96.1 0.052 1.8E-06 37.7 9.3 64 76-139 6-75 (104)
229 4ady_A RPN2, 26S proteasome re 96.0 1.3 4.3E-05 43.7 21.0 258 119-384 383-657 (963)
230 1pc2_A Mitochondria fission pr 96.0 0.062 2.1E-06 40.1 9.5 81 127-210 15-100 (152)
231 1nzn_A CGI-135 protein, fissio 95.7 0.12 4.1E-06 37.1 9.4 88 301-390 16-108 (126)
232 4h7y_A Dual specificity protei 95.5 0.17 6E-06 37.3 9.9 113 249-364 11-136 (161)
233 1v54_E Cytochrome C oxidase po 95.5 0.23 7.7E-06 33.7 9.6 61 337-397 26-86 (109)
234 4h7y_A Dual specificity protei 95.3 0.28 9.4E-06 36.3 10.4 104 214-319 11-127 (161)
235 3u64_A Protein TP_0956; tetrat 95.2 0.23 7.9E-06 41.4 11.0 84 268-353 180-272 (301)
236 2y69_E Cytochrome C oxidase su 94.5 0.51 1.7E-05 33.9 9.6 59 339-397 71-129 (152)
237 4b4t_P 26S proteasome regulato 94.4 2.7 9.4E-05 37.8 23.5 164 219-383 140-322 (445)
238 4gns_B Protein CSD3, chitin bi 94.3 0.25 8.6E-06 47.4 10.2 55 328-383 344-398 (754)
239 4fhn_B Nucleoporin NUP120; pro 94.0 5.4 0.00019 40.9 20.0 52 150-207 817-868 (1139)
240 3lvg_A Clathrin heavy chain 1; 93.9 1.7E-06 6E-11 76.4 -23.3 264 76-383 55-318 (624)
241 4gns_B Protein CSD3, chitin bi 93.8 1.3 4.4E-05 42.7 14.1 137 34-172 243-398 (754)
242 4ady_A RPN2, 26S proteasome re 93.6 6.2 0.00021 39.0 22.7 259 82-349 381-657 (963)
243 1nzn_A CGI-135 protein, fissio 93.5 0.39 1.3E-05 34.4 7.6 20 295-314 83-102 (126)
244 4b4t_P 26S proteasome regulato 93.5 4.2 0.00014 36.6 20.2 258 53-312 30-321 (445)
245 4fhn_B Nucleoporin NUP120; pro 93.4 2.9 0.0001 42.8 16.8 147 79-233 816-988 (1139)
246 2ff4_A Probable regulatory pro 93.0 0.49 1.7E-05 41.9 9.3 70 149-220 175-249 (388)
247 2ff4_A Probable regulatory pro 92.5 0.65 2.2E-05 41.1 9.4 76 183-259 173-253 (388)
248 3txn_A 26S proteasome regulato 91.8 6.3 0.00022 34.7 23.1 57 222-278 105-166 (394)
249 3lvg_A Clathrin heavy chain 1; 90.7 0.14 4.9E-06 46.0 3.0 217 74-306 82-324 (624)
250 3o48_A Mitochondria fission 1 90.6 2.3 7.7E-05 30.7 8.7 68 283-350 37-107 (134)
251 2wpv_A GET4, UPF0363 protein Y 90.1 7.9 0.00027 32.8 19.4 18 296-313 198-215 (312)
252 3txn_A 26S proteasome regulato 90.0 9.6 0.00033 33.5 23.4 167 77-243 21-208 (394)
253 1y8m_A FIS1; mitochondria, unk 89.2 5.1 0.00017 29.3 11.2 68 283-350 36-106 (144)
254 2y69_E Cytochrome C oxidase su 88.9 4.6 0.00016 29.1 8.9 59 304-363 71-129 (152)
255 3ffl_A Anaphase-promoting comp 88.8 4.2 0.00014 30.6 9.3 59 79-137 24-90 (167)
256 3ffl_A Anaphase-promoting comp 88.7 2.4 8.2E-05 31.9 7.9 125 37-174 18-151 (167)
257 3o48_A Mitochondria fission 1 88.5 1.9 6.5E-05 31.1 6.9 69 71-139 36-107 (134)
258 1v54_E Cytochrome C oxidase po 88.2 4.5 0.00015 27.5 9.7 49 125-173 25-73 (109)
259 1y8m_A FIS1; mitochondria, unk 88.1 4.7 0.00016 29.5 8.8 69 72-140 36-107 (144)
260 4b4t_R RPN7, 26S proteasome re 84.8 11 0.00036 33.8 11.6 60 112-171 133-194 (429)
261 1bpo_A Protein (clathrin); cla 83.2 25 0.00086 31.4 13.1 144 50-208 340-483 (494)
262 1qsa_A Protein (soluble lytic 82.0 34 0.0012 32.2 29.1 322 40-384 8-347 (618)
263 1zbp_A Hypothetical protein VP 80.4 4.9 0.00017 33.0 6.8 56 294-350 5-60 (273)
264 1zbp_A Hypothetical protein VP 80.4 9 0.00031 31.5 8.3 49 122-171 9-57 (273)
265 2p58_C Putative type III secre 80.1 11 0.00039 25.5 7.7 74 90-171 22-95 (116)
266 2uwj_G Type III export protein 78.7 11 0.00037 25.5 6.7 47 119-171 48-94 (115)
267 1wdy_A 2-5A-dependent ribonucl 78.0 16 0.00056 29.7 9.9 238 115-379 7-273 (285)
268 1wdy_A 2-5A-dependent ribonucl 77.8 12 0.00039 30.7 8.9 211 81-310 8-240 (285)
269 3esl_A Checkpoint serine/threo 77.3 24 0.00081 27.5 10.4 56 194-249 92-148 (202)
270 2uwj_G Type III export protein 74.1 18 0.0006 24.5 9.2 88 123-220 19-106 (115)
271 4b4t_S RPN3, 26S proteasome re 73.9 39 0.0013 30.9 11.3 65 74-139 230-299 (523)
272 2p58_C Putative type III secre 73.4 19 0.00064 24.4 10.0 89 122-220 19-107 (116)
273 3esl_A Checkpoint serine/threo 72.0 33 0.0011 26.7 10.2 58 123-181 92-150 (202)
274 2r9g_A AAA ATPase, central reg 71.8 33 0.0011 26.6 9.2 63 186-249 16-86 (204)
275 4b4t_R RPN7, 26S proteasome re 71.8 54 0.0019 29.1 17.0 100 146-245 132-237 (429)
276 3kae_A CDC27, possible protein 67.0 26 0.0009 26.5 7.1 34 353-386 203-238 (242)
277 3lpz_A GET4 (YOR164C homolog); 66.0 63 0.0021 27.6 23.9 113 111-239 36-159 (336)
278 3hra_A Ankyrin repeat family p 64.2 18 0.00062 27.6 6.6 14 86-99 13-26 (201)
279 2d2s_A Exocyst complex compone 64.0 45 0.0016 26.8 8.8 90 257-349 24-119 (235)
280 4gq2_M Nucleoporin NUP120; bet 63.4 75 0.0026 31.8 12.1 108 81-195 816-950 (950)
281 1k1a_A B-cell lymphoma 3-encod 63.0 34 0.0012 26.9 8.3 20 152-171 13-32 (241)
282 2wpv_A GET4, UPF0363 protein Y 62.3 71 0.0024 27.0 18.9 168 77-278 35-215 (312)
283 3bge_A Predicted ATPase; struc 62.2 53 0.0018 25.4 8.7 60 187-246 10-77 (201)
284 3eiq_C Programmed cell death p 61.9 78 0.0027 27.3 14.5 75 289-364 220-296 (358)
285 3kae_A CDC27, possible protein 59.3 56 0.0019 24.8 8.7 48 87-140 45-92 (242)
286 3lpz_A GET4 (YOR164C homolog); 59.2 84 0.0029 26.8 19.5 169 77-279 37-215 (336)
287 3jxi_A Vanilloid receptor-rela 58.6 10 0.00036 30.7 4.4 54 189-242 10-72 (260)
288 4a1g_A Mitotic checkpoint seri 57.7 55 0.0019 24.2 10.4 52 198-249 82-134 (152)
289 2d2s_A Exocyst complex compone 57.4 71 0.0024 25.6 8.9 89 80-171 23-117 (235)
290 3ctd_A Putative ATPase, AAA fa 57.0 68 0.0023 25.1 9.1 65 184-248 35-107 (213)
291 2qx5_A Nucleoporin NIC96; mRNA 56.4 1.4E+02 0.0047 28.4 13.8 23 115-137 157-179 (661)
292 1k1a_A B-cell lymphoma 3-encod 55.2 71 0.0024 25.0 8.9 49 120-168 16-66 (241)
293 1ug3_A EIF4GI, eukaryotic prot 55.2 47 0.0016 28.4 8.0 25 113-137 14-38 (339)
294 3hra_A Ankyrin repeat family p 54.6 43 0.0015 25.4 7.3 15 155-169 12-26 (201)
295 3kea_A K1L; tropism, ANK repea 53.9 70 0.0024 26.2 8.9 19 258-276 165-183 (285)
296 3eu9_A Huntingtin-interacting 53.1 54 0.0019 25.6 7.9 16 153-168 47-62 (240)
297 4ets_A Ferric uptake regulatio 52.0 47 0.0016 24.8 6.6 67 163-230 15-83 (162)
298 4g8k_A 2-5A-dependent ribonucl 51.6 1.1E+02 0.0036 25.7 11.5 92 272-374 220-316 (337)
299 4a1g_A Mitotic checkpoint seri 50.9 72 0.0025 23.5 10.2 53 127-180 82-135 (152)
300 3t8k_A Uncharacterized protein 50.8 79 0.0027 24.0 9.7 14 271-284 94-107 (186)
301 3eu9_A Huntingtin-interacting 50.5 48 0.0017 25.9 7.2 206 154-383 15-234 (240)
302 2nsz_A Programmed cell death p 49.4 68 0.0023 22.8 7.1 25 78-102 10-34 (129)
303 3eiq_C Programmed cell death p 48.7 1.3E+02 0.0045 25.9 13.7 75 254-329 220-296 (358)
304 2fe3_A Peroxide operon regulat 48.5 71 0.0024 23.2 7.1 36 335-370 35-70 (145)
305 2ion_A PDCD4, programmed cell 47.9 77 0.0026 23.3 7.1 23 220-242 13-35 (152)
306 1mzb_A Ferric uptake regulatio 47.6 68 0.0023 22.9 6.8 59 242-301 9-68 (136)
307 2fe3_A Peroxide operon regulat 47.6 67 0.0023 23.3 6.8 44 257-300 27-70 (145)
308 3ltm_A Alpha-REP4; protein eng 46.7 96 0.0033 23.8 19.4 141 74-231 32-172 (211)
309 4aez_C MAD3, mitotic spindle c 46.7 1.1E+02 0.0037 24.3 9.0 52 198-249 131-183 (223)
310 2xig_A Ferric uptake regulatio 46.3 59 0.002 23.8 6.3 58 242-300 18-75 (150)
311 1mzb_A Ferric uptake regulatio 46.0 75 0.0026 22.7 6.8 60 277-337 9-69 (136)
312 3kea_A K1L; tropism, ANK repea 45.9 50 0.0017 27.2 6.7 205 151-383 34-245 (285)
313 2ijq_A Hypothetical protein; s 45.0 94 0.0032 23.2 7.8 53 333-385 44-104 (161)
314 2nsz_A Programmed cell death p 44.6 82 0.0028 22.4 8.5 21 257-277 13-33 (129)
315 2w57_A Ferric uptake regulatio 44.2 81 0.0028 23.1 6.8 59 277-336 8-67 (150)
316 2w57_A Ferric uptake regulatio 44.1 73 0.0025 23.3 6.6 61 241-302 7-68 (150)
317 3pvs_A Replication-associated 44.1 1.8E+02 0.006 26.0 13.4 35 264-298 268-302 (447)
318 2ion_A PDCD4, programmed cell 43.8 55 0.0019 24.2 5.8 25 78-102 12-36 (152)
319 3t8k_A Uncharacterized protein 42.7 1.1E+02 0.0037 23.2 10.0 93 155-251 13-109 (186)
320 4aez_C MAD3, mitotic spindle c 42.7 1.3E+02 0.0043 23.9 9.3 53 127-180 131-184 (223)
321 3eyy_A Putative iron uptake re 42.4 55 0.0019 23.8 5.6 57 242-300 10-66 (145)
322 2xig_A Ferric uptake regulatio 42.0 99 0.0034 22.6 7.2 43 293-335 33-75 (150)
323 2fu4_A Ferric uptake regulatio 41.8 65 0.0022 20.4 6.5 60 311-371 7-67 (83)
324 2wvi_A Mitotic checkpoint seri 41.8 1.1E+02 0.0037 22.9 10.5 53 198-250 77-130 (164)
325 2zu6_B Programmed cell death p 41.4 1.6E+02 0.0054 24.7 12.3 25 113-137 6-30 (307)
326 2wvi_A Mitotic checkpoint seri 41.1 1.1E+02 0.0038 22.9 10.4 53 128-181 78-131 (164)
327 2rfa_A Transient receptor pote 39.9 1.3E+02 0.0044 23.3 9.2 17 154-170 43-59 (232)
328 3eyy_A Putative iron uptake re 39.2 91 0.0031 22.6 6.4 56 173-230 11-66 (145)
329 1wty_A Hypothetical protein TT 39.0 96 0.0033 21.6 7.5 70 125-200 3-72 (119)
330 4ets_A Ferric uptake regulatio 39.0 91 0.0031 23.2 6.5 59 242-301 24-84 (162)
331 3f3f_C Nucleoporin NUP85; stru 38.9 1.1E+02 0.0036 28.3 7.8 87 77-165 481-569 (570)
332 3bqo_A Telomeric repeat-bindin 38.8 27 0.00093 27.0 3.3 20 118-137 125-144 (211)
333 4b4t_S RPN3, 26S proteasome re 38.1 2.4E+02 0.0081 25.8 11.1 65 181-245 231-299 (523)
334 3aji_A 26S proteasome non-ATPa 36.8 1.4E+02 0.0049 23.0 8.7 19 152-170 10-28 (231)
335 3b7b_A Euchromatic histone-lys 35.9 1E+02 0.0035 24.0 6.9 22 363-384 214-235 (237)
336 3aji_A 26S proteasome non-ATPa 35.7 1.1E+02 0.0037 23.7 7.0 18 83-100 11-28 (231)
337 4g8k_A 2-5A-dependent ribonucl 35.7 1.9E+02 0.0066 24.1 9.1 55 43-99 26-80 (337)
338 2dod_A Transcription elongatio 35.6 47 0.0016 21.5 3.7 32 161-193 16-47 (82)
339 3ltj_A Alpharep-4; protein eng 35.4 1.4E+02 0.0049 22.5 20.1 137 78-231 31-167 (201)
340 2f6m_A Suppressor protein STP2 35.4 77 0.0026 19.4 4.5 46 112-158 4-49 (65)
341 2r9g_A AAA ATPase, central reg 35.2 1.6E+02 0.0054 22.9 9.8 36 299-335 27-62 (204)
342 3pvs_A Replication-associated 34.4 2.5E+02 0.0086 25.0 13.3 140 196-351 166-325 (447)
343 3qil_A Clathrin heavy chain 1; 34.2 34 0.0012 24.0 3.0 52 184-238 35-86 (125)
344 3bge_A Predicted ATPase; struc 33.8 1.7E+02 0.0056 22.7 9.1 32 300-331 21-52 (201)
345 3f3f_C Nucleoporin NUP85; stru 33.6 1.3E+02 0.0046 27.7 7.6 87 112-201 481-569 (570)
346 3ljn_A Hypothetical protein; a 33.5 1.2E+02 0.0041 25.7 7.4 16 366-381 251-266 (364)
347 2ijq_A Hypothetical protein; s 33.2 1.5E+02 0.0051 22.1 8.2 49 89-137 46-102 (161)
348 4fke_A Aminopeptidase N; zinc 32.8 3.8E+02 0.013 26.6 18.1 159 185-350 690-860 (909)
349 2zu6_B Programmed cell death p 32.8 2.2E+02 0.0075 23.9 11.8 70 289-359 169-240 (307)
350 1s6c_A KV4 potassium channel-i 32.7 1.5E+02 0.0051 21.9 11.8 20 252-271 157-176 (183)
351 3ltj_A Alpharep-4; protein eng 32.4 1.6E+02 0.0055 22.2 19.9 80 143-231 57-136 (201)
352 2pnn_A Transient receptor pote 32.4 58 0.002 26.3 4.9 53 190-242 19-80 (273)
353 2b7e_A PRE-mRNA processing pro 32.1 36 0.0012 20.4 2.5 10 199-208 4-13 (59)
354 3ctd_A Putative ATPase, AAA fa 31.0 1.9E+02 0.0066 22.6 9.2 33 265-297 49-81 (213)
355 3mwm_A ZUR, putative metal upt 30.2 68 0.0023 23.1 4.3 45 256-300 18-62 (139)
356 1s6c_A KV4 potassium channel-i 29.9 1.7E+02 0.0057 21.6 9.1 134 71-207 34-182 (183)
357 2fu4_A Ferric uptake regulatio 29.4 1.1E+02 0.0037 19.3 6.4 11 270-280 36-46 (83)
358 2o03_A Probable zinc uptake re 29.3 76 0.0026 22.5 4.5 44 257-300 16-59 (131)
359 1uzc_A Hypothetical protein FL 28.6 66 0.0022 20.1 3.4 31 161-192 14-44 (71)
360 2o03_A Probable zinc uptake re 28.6 98 0.0033 21.9 4.9 46 292-337 16-61 (131)
361 3qil_A Clathrin heavy chain 1; 28.4 1.6E+02 0.0053 20.8 6.2 57 37-97 30-86 (125)
362 3e3v_A Regulatory protein RECX 28.3 1.9E+02 0.0066 21.8 9.4 27 235-261 52-78 (177)
363 2ko4_A Mediator of RNA polymer 28.2 56 0.0019 20.8 2.9 32 176-207 31-62 (81)
364 1ug3_A EIF4GI, eukaryotic prot 28.0 57 0.002 27.9 4.2 25 219-243 14-38 (339)
365 3mwm_A ZUR, putative metal upt 27.5 90 0.0031 22.4 4.6 46 291-336 18-63 (139)
366 3e3v_A Regulatory protein RECX 27.0 2E+02 0.007 21.6 9.5 115 267-384 49-165 (177)
367 3l6a_A Eukaryotic translation 26.9 3.1E+02 0.01 23.7 15.4 25 113-137 15-39 (364)
368 3twr_A Tankyrase-2; ankyrin re 26.1 1.8E+02 0.0063 20.8 6.9 15 154-168 14-28 (165)
369 2rfa_A Transient receptor pote 25.4 2.3E+02 0.0079 21.7 8.9 52 83-135 8-59 (232)
370 3c1d_A Protein ORAA, regulator 24.9 2.1E+02 0.0071 21.1 11.4 49 268-318 47-95 (159)
371 3ljn_A Hypothetical protein; a 24.7 2.1E+02 0.0072 24.1 7.4 46 296-346 218-266 (364)
372 3mv2_A Coatomer subunit alpha; 24.7 3.2E+02 0.011 23.1 10.4 49 198-246 187-237 (325)
373 3mv2_A Coatomer subunit alpha; 24.3 3.2E+02 0.011 23.1 10.6 50 302-351 186-237 (325)
374 3vu7_H DNA repair protein REV1 24.1 51 0.0017 23.4 2.6 33 70-102 55-87 (124)
375 3jxi_A Vanilloid receptor-rela 24.1 99 0.0034 24.6 4.9 56 223-278 9-73 (260)
376 1wty_A Hypothetical protein TT 24.0 1.8E+02 0.0062 20.1 6.6 75 267-348 4-79 (119)
377 4gq2_M Nucleoporin NUP120; bet 23.3 5.7E+02 0.019 25.5 13.5 131 116-265 816-950 (950)
378 1oai_A Nuclear RNA export fact 23.1 52 0.0018 19.7 2.1 12 160-171 35-46 (59)
379 3lxu_X Tripeptidyl-peptidase 2 22.9 3E+02 0.01 28.7 8.6 48 157-208 1296-1343(1354)
380 2etb_A Transient receptor pote 22.4 1.6E+02 0.0054 23.3 5.8 56 188-243 6-70 (256)
381 1jog_A Hypothetical protein HI 22.4 2.3E+02 0.0078 20.6 7.0 40 161-200 54-96 (146)
382 1bd8_A P19INK4D CDK4/6 inhibit 21.9 66 0.0023 23.1 3.1 16 85-100 9-24 (156)
383 2czy_A Paired amphipathic heli 21.7 1.3E+02 0.0043 19.1 3.9 11 338-348 5-15 (77)
384 1wgl_A TOLL-interacting protei 21.4 1.4E+02 0.0048 17.8 3.8 21 123-143 36-56 (59)
385 3r88_A Anthranilate phosphorib 21.3 3.3E+02 0.011 23.6 7.6 64 76-140 24-89 (377)
386 2jul_A Calsenilin; EF-hand, ca 21.0 3.2E+02 0.011 21.7 10.0 150 54-207 89-255 (256)
387 1bd8_A P19INK4D CDK4/6 inhibit 20.7 1.7E+02 0.0058 20.7 5.2 16 155-170 9-24 (156)
388 3c1d_A Protein ORAA, regulator 20.7 2.6E+02 0.0088 20.6 11.0 51 232-284 46-96 (159)
389 4fke_A Aminopeptidase N; zinc 20.2 6.4E+02 0.022 25.0 18.5 158 220-384 690-859 (909)
390 2rg8_A Programmed cell death p 20.0 69 0.0024 24.0 2.7 127 255-383 14-144 (165)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.4e-33 Score=259.11 Aligned_cols=204 Identities=13% Similarity=0.169 Sum_probs=110.3
Q ss_pred HHHHHHHhHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC---------hh
Q 041936 129 AVRTFKEMDEHKLRHSV-GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD---------SS 198 (402)
Q Consensus 129 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---------~~ 198 (402)
+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++|++|. ..|++||..||++||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555555444433 245556666666666666666666663 34666666666666666665443 34
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 199 SAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 279 SKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 279 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-31 Score=254.48 Aligned_cols=354 Identities=7% Similarity=-0.050 Sum_probs=260.5
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCC--------------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCC
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTP--------------ESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPD 106 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 106 (402)
........+...|++++|+++|+...... +...+..+|..++.++.+.|++++|.++|+++.....
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 44556667777788888888887432211 2234578888899999999999999888888763211
Q ss_pred ----------------------------------------------------------------------CCchHHHHHH
Q 041936 107 ----------------------------------------------------------------------LQNERFHAHS 116 (402)
Q Consensus 107 ----------------------------------------------------------------------~~~~~~~~~l 116 (402)
+++...+..+
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 311 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHH
Confidence 1344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
+..|.+.|++++|+++|+++.+.+ +.+..+++.++.++.+.|++++|..+++++.+. .+.+..+|+.++.+|.+.|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhcc
Confidence 666666666666666666666544 345555666666666666666666666666432 24467778888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
+++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887653 3356788888888888888888888888887765 45777888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 277 MLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPN--SSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 277 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.
T Consensus 467 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 877532 36778888888888888888888888888765 55676 678888888888888888888888888776
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcCC
Q 041936 351 GWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLP 401 (402)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 401 (402)
+ +.+..+|..+..+|.+.|++++|.+.|+++.+..|.+...|..+...|.
T Consensus 546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 5 5577888888888888888888888888888887888888887777764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.3e-33 Score=258.15 Aligned_cols=208 Identities=13% Similarity=0.169 Sum_probs=182.1
Q ss_pred chHHHHHHHhhcCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC---------H
Q 041936 92 NGISQYLEELKTRPDLQN-ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD---------Y 161 (402)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 161 (402)
..+..+.+.+...+.... ...+..+|.+|++.|++++|+++|++|.+.|++||..+||.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 345555566665554443 456888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
++|.++|++| ...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M-~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQM-IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 8899999999 556999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
|.+.|+.||..+|+++|.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999988643
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-30 Score=249.02 Aligned_cols=356 Identities=8% Similarity=-0.062 Sum_probs=257.2
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHH
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHS 116 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (402)
.....+...++.+...|+++.|+++|+.+.. ..|+..++..++..+.+.|++++|..+++.+.. .+.+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHH
Confidence 4455567888888889999999999988862 345667888888888888888888888888753 24556677777
Q ss_pred HHHHHhcCCHHHHHHHHHHhHh-C--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcC-----
Q 041936 117 IILYGQANMTEHAVRTFKEMDE-H--------------KLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG----- 176 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~-~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 176 (402)
+.+|.+.|++++|+++|+++.. . +.+.+..+|+.++.+|.+.|++++|.++|+++.+...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 7777777777777777774322 1 2234577777777777777777777777776643210
Q ss_pred ----------------------------------------------------------------CCCCHHHHHHHHHHHH
Q 041936 177 ----------------------------------------------------------------IKPDLDTYNRVIKAFC 192 (402)
Q Consensus 177 ----------------------------------------------------------------~~p~~~~~~~li~~~~ 192 (402)
.+++..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 1267778888888888
Q ss_pred hcCChhHHHHHHHHHHhCCC---------------------------------CCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSI---------------------------------KPNASSFGALVAGFYKEEKYEDVNKVL 239 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (402)
+.|++++|.++|+++.+.+. +.+..+++.++.+|.+.|++++|.++|
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 88888888888888775431 224556666667777777777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 240 QMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+... .
T Consensus 397 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 473 (597)
T 2xpi_A 397 SKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-Y 473 (597)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-C
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 7776643 34566777777777777777777777777776532 3667777777777777777778777777776532 2
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhH
Q 041936 320 NSSVYFTMVYFMCKGGDYETALGFCKESIAK----GWVPN--FTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTW 393 (402)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 393 (402)
+..+|..++..|.+.|++++|.++++++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+..|.+..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 5677888888888888888888888877665 55666 67788888888888888888888888877777777777
Q ss_pred HHHHhcC
Q 041936 394 NEIEAGL 400 (402)
Q Consensus 394 ~~l~~~~ 400 (402)
..+..+|
T Consensus 554 ~~l~~~~ 560 (597)
T 2xpi_A 554 TAIALVY 560 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.3e-26 Score=208.16 Aligned_cols=345 Identities=10% Similarity=-0.027 Sum_probs=294.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 041936 44 AALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQA 123 (402)
Q Consensus 44 ~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 123 (402)
..-.++...++++.|..+++...... +.+...|..+...+.+.|++++|.+.|+++... .+.+...+..+..++.+.
T Consensus 38 ~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 38 LLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL-KPDFIDGYINLAAALVAA 114 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHc
Confidence 34455667889999999988776442 346788999999999999999999999998843 455667788899999999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSI 203 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 203 (402)
|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...
T Consensus 115 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp SCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998875 5566778888899999999999999999987652 44578899999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 041936 204 LAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK 283 (402)
Q Consensus 204 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (402)
|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+..++..+..++.+.|++++|...|+++.+.+..
T Consensus 192 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 192 FEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99998864 3457788999999999999999999999988765 456788999999999999999999999999987432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041936 284 PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLV 363 (402)
Q Consensus 284 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (402)
+..+|..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 270 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 346 (388)
T 1w3b_A 270 -FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp -CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 56789999999999999999999999999863 3468889999999999999999999999998864 56788999999
Q ss_pred HHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhc
Q 041936 364 TGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAG 399 (402)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 399 (402)
.++.+.|++++|.+.|+++.+..|.+...|..+-..
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence 999999999999999999999888888888776544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.4e-26 Score=209.51 Aligned_cols=342 Identities=11% Similarity=0.017 Sum_probs=296.7
Q ss_pred HHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHH
Q 041936 48 LLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTE 127 (402)
Q Consensus 48 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 127 (402)
.+-..|++++|.+.++.+....+ .+...+..+...+...|++++|...++.... ..+.+...+..+...+.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHCCCHH
Confidence 34457899999999988754422 2456777888888999999999999998884 35677888999999999999999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 128 HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999998875 6677889999999999999999999999997652 334566788889999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 041936 208 DRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSV 287 (402)
Q Consensus 208 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 287 (402)
.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++....... +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 8863 4467899999999999999999999999999876 456788999999999999999999999999876322 578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
++..+..++...|++++|...|+++.+.+. .+..+|..+...+.+.|++++|...++++.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 899999999999999999999999998642 247789999999999999999999999999875 678899999999999
Q ss_pred cCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 368 GASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
+.|++++|.+.++++.+..|.+..+|..+..+|
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999999999999999998888888888887665
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=4.1e-24 Score=197.13 Aligned_cols=314 Identities=13% Similarity=0.081 Sum_probs=264.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALL 152 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 152 (402)
.+...+..+...+.+.|++++|..+|+.+... .+.+...+..+..++...|++++|+..|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 35678888999999999999999999998843 45567888889999999999999999999998876 66788999999
Q ss_pred HHHHHcCCHHHHHHHHHHchhhcCCCCCH----HHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 041936 153 LALTIAKDYKEVKRVFIEFPKTYGIKPDL----DTYNRV------------IKAFCESSDSSSAYSILAEMDRKSIKPNA 216 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 216 (402)
.+|...|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...|+++.+.. +.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 9999999999999999998643 4443 455555 444888999999999999998764 4578
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH----
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHF---- 292 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l---- 292 (402)
.++..+..+|.+.|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...|+++...... +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 889999999999999999999999998765 567888999999999999999999999999876322 34444444
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH
Q 041936 293 --------IYGFCKDGNFEEAKKFYRIMSNSGLSPN-----SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTM 359 (402)
Q Consensus 293 --------~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 359 (402)
...|...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+...|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 78899999999999999999885 344 4478888999999999999999999998764 5578999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 360 KSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 360 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
..+..+|...|++++|.+.++++.+..|.+...|..+-
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999999999999998788887777665
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=9e-23 Score=188.13 Aligned_cols=329 Identities=12% Similarity=0.025 Sum_probs=269.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 041936 44 AALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQA 123 (402)
Q Consensus 44 ~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 123 (402)
.....+...|+++.|++.|+.+.... +.+...+..+...+...|++++|...++.+... .+.+...+..+..+|.+.
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 107 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTAARLQRGHLLLKQ 107 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHc
Confidence 44556678899999999999886532 236789999999999999999999999999843 355678888999999999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSV---GAFNAL------------LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
|++++|...|+++.+.+ +.+. ..+..+ ...+...|++++|...|+++.+.. +.+...+..+.
T Consensus 108 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 184 (450)
T 2y4t_A 108 GKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRA 184 (450)
T ss_dssp TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 99999999999999865 4444 566555 444899999999999999997653 55778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH-----------
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVR----------- 257 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 257 (402)
.+|.+.|++++|.++|+++.+.. +.+..++..+..+|...|++++|...|+++.+.. +.+...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998763 4578899999999999999999999999998764 3344455444
Q ss_pred -HHHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 258 -IHSLCKLRKCAEAKALLDEMLSKGMKPN-----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 258 -l~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
...+.+.|++++|...|+++.+. .|+ ...|..+..++.+.|++++|...++++.+.. +.+...|..+..+|
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 78899999999999999999985 344 3478889999999999999999999998753 23678999999999
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH------------HHHcCC-----ChHHHHHHHHHHHh
Q 041936 332 CKGGDYETALGFCKESIAKGWVPNFTTMKSLVT------------GLAGAS-----KVSEAKELIGLVKE 384 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a~~~~~~~~~ 384 (402)
...|++++|...++++.+.. +-+...+..+.. .|...| +.+++.+.+++...
T Consensus 340 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l 408 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLAL 408 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999864 445666666653 344445 66778888887433
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.4e-21 Score=174.21 Aligned_cols=316 Identities=13% Similarity=0.061 Sum_probs=259.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..+...+...|++++|...++.+... .+.+...+..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3467788888899999999999999998843 45567788888899999999999999999988765 567788999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCC----CHHHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKP----DLDTYNRV------------IKAFCESSDSSSAYSILAEMDRKSIKPNAS 217 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 217 (402)
++...|++++|...|+++.+. .| +...+..+ ...+...|++++|.+.++++.+.. +.+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 155 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE 155 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence 999999999999999988643 44 34444444 578889999999999999998764 45778
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-------
Q 041936 218 SFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYS------- 290 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~------- 290 (402)
.+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.... +...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHH
Confidence 89999999999999999999999998865 567888999999999999999999999999876322 333332
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 041936 291 -----HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS----SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKS 361 (402)
Q Consensus 291 -----~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (402)
.+...+...|++++|...++++.+.... +. ..+..+...+...|++++|...++++.+.. +.+..++..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 2366788999999999999999885322 22 235567788999999999999999998864 557889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhc
Q 041936 362 LVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAG 399 (402)
Q Consensus 362 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 399 (402)
+...+.+.|++++|.+.|+++.+..|.+...+..+..+
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99999999999999999999999888888887776654
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.9e-22 Score=187.79 Aligned_cols=241 Identities=10% Similarity=0.060 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGF 226 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (402)
++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 3444444455555555555555555433 2224445555555555555555555555555442 22444555555555
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAK 306 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 306 (402)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHH
Confidence 56666666666666555543 23445555555666666666666666666555421 13445555666666666666666
Q ss_pred HHHHHHHhCCCC-CC----HHhHHHHHHHHHc---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 041936 307 KFYRIMSNSGLS-PN----SSVYFTMVYFMCK---GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 307 ~~~~~m~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
..++++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 666665543111 11 2255566666666 666666666666665543 33455566666666666666666666
Q ss_pred HHHHHhcCCCChhhHH
Q 041936 379 IGLVKEKFTKNVDTWN 394 (402)
Q Consensus 379 ~~~~~~~~~~~~~~~~ 394 (402)
|+++.+..|.+...+.
T Consensus 472 ~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 472 FEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHHHHHCSSHHHHHH
T ss_pred HHHHHHhccccHHHHH
Confidence 6666665554444443
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=4.4e-21 Score=169.10 Aligned_cols=282 Identities=9% Similarity=-0.026 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
.+......+...|++++|.++++.+... .+.+...+..++..+...|++++|..+++++.+.. +.+...|..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEK-DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 4444555555555555555555555422 22333334444445555555555555555555443 334455555555555
Q ss_pred HcC-CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041936 157 IAK-DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDV 235 (402)
Q Consensus 157 ~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 235 (402)
..| ++++|...|++..+.. +.+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 555 5555555555554321 2234445555555555555555555555555442 22334444455555555555555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041936 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG--------MKPNSVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. ...+..++..+..++...|++++|..
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555555443 3344455555555555555555555555554321 01123445555555555555555555
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041936 308 FYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 366 (402)
Q Consensus 308 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (402)
.+++..+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 258 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 258 YHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5555554321 134445555555555555555555555554432 33444444444444
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-20 Score=177.04 Aligned_cols=345 Identities=9% Similarity=-0.005 Sum_probs=285.6
Q ss_pred HHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC
Q 041936 46 LTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM 125 (402)
Q Consensus 46 l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 125 (402)
-..+...|+++.|++.|+.+.... |+...|..+..++.+.|++++|.+.++.+... .+.+...+..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL-KPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHhh
Confidence 345566899999999999997653 57899999999999999999999999999843 45677888899999999999
Q ss_pred HHHHHHHHHHhHhCCCCCC-------------------------------------------------------------
Q 041936 126 TEHAVRTFKEMDEHKLRHS------------------------------------------------------------- 144 (402)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~------------------------------------------------------------- 144 (402)
+++|...|+++.+.+ +++
T Consensus 89 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 89 FADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp HHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 999999999998765 211
Q ss_pred ------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHchh-----hcCC-------CCCHHHHHHHHHHH
Q 041936 145 ------------------VGAFNALLLALTI---AKDYKEVKRVFIEFPK-----TYGI-------KPDLDTYNRVIKAF 191 (402)
Q Consensus 145 ------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~p~~~~~~~li~~~ 191 (402)
...+......+.. .|++++|..+|+++.+ .... +.+..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 3333333333443 8999999999999865 2111 22456788899999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 041936 192 CESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (402)
...|++++|...++++.+.. |+..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998875 338889999999999999999999999998865 556788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 272 ALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 272 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
..++++.+.... +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+..
T Consensus 325 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 325 KDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 999999987433 567888999999999999999999999987632 256788899999999999999999999987752
Q ss_pred C-CCC----HHHHHHHHHHHHc---CCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 352 W-VPN----FTTMKSLVTGLAG---ASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 352 ~-~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
. .++ ...+..+...+.. .|++++|.+.++++.+..+.+...|..+...|
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 1 111 3488899999999 99999999999999998888888887766554
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=5.7e-20 Score=173.23 Aligned_cols=336 Identities=10% Similarity=0.042 Sum_probs=233.3
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN 124 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 124 (402)
.-..+...|+++.|++.|+.+....+ .+...+..+..++.+.|++++|.+.++.+... .+.+...+..+..++...|
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEI-KPDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHcC
Confidence 34455667899999999988765432 35678888889999999999999999888743 4556777888888888888
Q ss_pred CHHHHHHHHHHhH-------------------------------------------------------------------
Q 041936 125 MTEHAVRTFKEMD------------------------------------------------------------------- 137 (402)
Q Consensus 125 ~~~~A~~~~~~~~------------------------------------------------------------------- 137 (402)
++++|+..|+.+.
T Consensus 108 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (537)
T 3fp2_A 108 NFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSS 187 (537)
T ss_dssp CHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCC
T ss_pred CHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcc
Confidence 8888888774331
Q ss_pred ------------------------------------------hCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHH
Q 041936 138 ------------------------------------------EHKLRHS-------VGAFNALLLALTIAKDYKEVKRVF 168 (402)
Q Consensus 138 ------------------------------------------~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~ 168 (402)
+.. +.+ ..++..+...+...|++++|...|
T Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 111 111 123444555666777777777777
Q ss_pred HHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 041936 169 IEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK 248 (402)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (402)
++..+. .|+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +
T Consensus 267 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 341 (537)
T 3fp2_A 267 QESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-P 341 (537)
T ss_dssp HHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-C
Confidence 777654 4556677777777777788888888887777653 3356677777777777888888888887777654 3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHh
Q 041936 249 SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL-----SPNSSV 323 (402)
Q Consensus 249 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~ 323 (402)
.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... ......
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 4456677777777788888888888887776532 2456777777777888888888888877765321 111122
Q ss_pred HHHHHHHHHcc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChh
Q 041936 324 YFTMVYFMCKG----------GDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVD 391 (402)
Q Consensus 324 ~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 391 (402)
+......+... |++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.|+++.+..+.+..
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 33444556666 78888888888877754 456777888888888888888888888888776554443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2e-19 Score=160.27 Aligned_cols=312 Identities=11% Similarity=0.029 Sum_probs=254.5
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN 124 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 124 (402)
.-..+...|+++.|++.|+.+....+ .+...+..+...+...|++++|...++.+... .+.+...+..+...+...|
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-KMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHcC
Confidence 34456678999999999998865432 35678999999999999999999999998843 3556688889999999999
Q ss_pred CHHHHHHHHHHhHhCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 125 MTEHAVRTFKEMDEHKLR---HSVGAFNAL------------LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
++++|...|+++.+.. + .+...+..+ ...+...|++++|...++++.+.. +.+...+..+..
T Consensus 86 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~ 162 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAE 162 (359)
T ss_dssp CHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 9999999999998864 3 355555555 578899999999999999997653 456788999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH------------HH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYN------------VR 257 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l 257 (402)
.+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+. .+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 5578899999999999999999999999998865 33333333 23
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 258 IHSLCKLRKCAEAKALLDEMLSKGMKPNS----VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...+++..+.. +.+..++..+...+..
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 66788999999999999999886432 22 235567889999999999999999999863 2367889999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 334 GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
.|++++|...++++.+.. +.+...+..+..+..
T Consensus 319 ~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 999999999999999874 445666666655543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=4e-20 Score=162.90 Aligned_cols=287 Identities=9% Similarity=-0.031 Sum_probs=213.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHH
Q 041936 107 LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR 186 (402)
Q Consensus 107 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 186 (402)
+.+...+......+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...|..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 95 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFA 95 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHH
Confidence 3445566677777778888888888888877665 5555666677777888888888888888876542 345667777
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 041936 187 VIKAFCESS-DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLR 265 (402)
Q Consensus 187 li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (402)
+...+...| ++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 888888888 8888888888887764 3356677788888888888888888888887765 344566777778888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHhHHHHHHHHHccCCh
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG--------LSPNSSVYFTMVYFMCKGGDY 337 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~l~~~~~~~g~~ 337 (402)
++++|...+++..+... .+...+..+...+...|++++|...+++..+.. ...+..++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 88888888888877632 256777788888888888888888888777531 122356777888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 338 ETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
++|...++++.+.. +.+...+..+..++.+.|++++|.+.++++.+..|.+...|..+..+|
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 88888888887764 446677788888888888888888888888777777777777666544
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=4.3e-19 Score=167.25 Aligned_cols=318 Identities=15% Similarity=0.049 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (402)
...+..+...+.+.|++++|.+.|+++... .+.+...+..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 356788889999999999999999999843 45677889999999999999999999999999876 6788999999999
Q ss_pred HHHcCCHHHHHHHHHHchhhc-----------------------------------------------------------
Q 041936 155 LTIAKDYKEVKRVFIEFPKTY----------------------------------------------------------- 175 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~----------------------------------------------------------- 175 (402)
+...|++++|...|+.+....
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 999999999998875331100
Q ss_pred -----------------------------------------------CCCCC--------HHHHHHHHHHHHhcCChhHH
Q 041936 176 -----------------------------------------------GIKPD--------LDTYNRVIKAFCESSDSSSA 200 (402)
Q Consensus 176 -----------------------------------------------~~~p~--------~~~~~~li~~~~~~~~~~~a 200 (402)
...|+ ..++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 00111 11233444455556666666
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 201 YSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 201 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
.+.++++.+. .|+..++..+...+...|++++|.+.++++.+.. +.+..+|..+...+...|++++|...++++.+.
T Consensus 263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 6666666654 3345566666666666666666666666666544 344556666666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC-----CCCC
Q 041936 281 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG-----WVPN 355 (402)
Q Consensus 281 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~ 355 (402)
... +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. ....
T Consensus 340 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 NPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp CTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 322 345566666666666667766666666665421 234556666666666677777766666665431 1111
Q ss_pred HHHHHHHHHHHHcC----------CChHHHHHHHHHHHhcCCCChhhHHHHHhc
Q 041936 356 FTTMKSLVTGLAGA----------SKVSEAKELIGLVKEKFTKNVDTWNEIEAG 399 (402)
Q Consensus 356 ~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 399 (402)
...+......+.+. |++++|...|+++.+..|.+...|..+...
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 12233334445555 666777777776666666666666555443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=7.6e-20 Score=163.85 Aligned_cols=293 Identities=10% Similarity=-0.014 Sum_probs=230.0
Q ss_pred HhcCCcchHHH-HHHHhhcCCC-C--CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 86 SEANYFNGISQ-YLEELKTRPD-L--QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 86 ~~~~~~~~a~~-~~~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
...|++++|.+ .+++...... . .+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578899988 8876652211 1 124556778888999999999999999999876 67888999999999999999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH---------------HHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGA---------------LVAGF 226 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------l~~~~ 226 (402)
++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+.. .+..+
T Consensus 115 ~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 115 LLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999987653 457788999999999999999999999999886422 2222221 23334
Q ss_pred hccCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKS-GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEA 305 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 305 (402)
...|++++|...++++.+..... +..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998865211 57889999999999999999999999998863 23578899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHcCCChHHH
Q 041936 306 KKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV----------PNFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 306 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a 375 (402)
...++++.+.. +.+...+..+...|...|++++|...++++.+.... ....+|..+..+|...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998853 235788999999999999999999999998875211 1268899999999999999999
Q ss_pred HHHHHHHHh
Q 041936 376 KELIGLVKE 384 (402)
Q Consensus 376 ~~~~~~~~~ 384 (402)
..++++..+
T Consensus 350 ~~~~~~~l~ 358 (368)
T 1fch_A 350 GAADARDLS 358 (368)
T ss_dssp HHHHTTCHH
T ss_pred HHhHHHHHH
Confidence 998875443
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=1.9e-19 Score=161.30 Aligned_cols=291 Identities=10% Similarity=-0.010 Sum_probs=230.3
Q ss_pred cCCChhHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHH
Q 041936 51 SESNPEKILE-ICRAAALTPESHL--DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTE 127 (402)
Q Consensus 51 ~~~~~~~al~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 127 (402)
..++++.|++ .++......+..| +...+..+...+.+.|++++|...++.+... .+.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-DPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHH
Confidence 3467778887 7775543322222 3456788899999999999999999999854 4567788889999999999999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHH---------------HHHHHH
Q 041936 128 HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR---------------VIKAFC 192 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~---------------li~~~~ 192 (402)
+|+..|+++.+.+ +.+..++..+..++...|++++|...++++.+.. +.+...+.. .+..+.
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999998876 6788999999999999999999999999987542 222222221 233344
Q ss_pred hcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (402)
..|++++|...++++.+..... +..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999998864221 57889999999999999999999999998865 456788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----------CHHhHHHHHHHHHccCChHHHH
Q 041936 272 ALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP----------NSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 272 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
..|+++.+.. +.+...+..+..+|...|++++|...|+++.+..... ...+|..+..+|...|+.++|.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999998863 2367889999999999999999999999988642111 2678999999999999999999
Q ss_pred HHHHHH
Q 041936 342 GFCKES 347 (402)
Q Consensus 342 ~~~~~~ 347 (402)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 987643
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.1e-19 Score=162.79 Aligned_cols=267 Identities=7% Similarity=-0.071 Sum_probs=217.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
+...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 34457778888999999999999999998876 6788999999999999999999999999997653 44678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH----------hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhhHHHH
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNA----------SSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-SGVSMYNVR 257 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 257 (402)
..|...|++++|.+.|+++.+.. +.+. ..+..+...+...|++++|.+.++++.+.... .+..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999998753 1112 22334578899999999999999999887521 168889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 041936 258 IHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDY 337 (402)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 337 (402)
...|...|++++|...|+++.+... .+..+|..+..+|...|++++|...|+++.+... .+..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999988632 3678999999999999999999999999988632 2478899999999999999
Q ss_pred HHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 041936 338 ETALGFCKESIAKGW-----------VPNFTTMKSLVTGLAGASKVSEAKELIGL 381 (402)
Q Consensus 338 ~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (402)
++|...++++.+... ..+..+|..+..++...|+.+.+..+.+.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999876420 11367889999999999999998887765
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=2.2e-18 Score=151.50 Aligned_cols=267 Identities=9% Similarity=-0.045 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..+......+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHH
Confidence 345566667778888888888888877665 5567777778888888888888888888776542 4456677778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH--------------HH-HHhccCCHHHHHHHHHHHHHCCCCCChhhHH
Q 041936 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGAL--------------VA-GFYKEEKYEDVNKVLQMMERYGMKSGVSMYN 255 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (402)
+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 888888888888888877653 2233333333 33 3778899999999999998865 45778899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG 335 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 335 (402)
.+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+... .+...+..+...|...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Confidence 999999999999999999999987632 3577899999999999999999999999887632 35778899999999999
Q ss_pred ChHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 336 DYETALGFCKESIAKGWVP-----------NFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
++++|...++++.+..... +...+..+..++.+.|++++|..++++..+
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999988763111 477889999999999999999999876544
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=6e-19 Score=157.95 Aligned_cols=266 Identities=11% Similarity=0.007 Sum_probs=218.7
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..+...+.+.|++++|.++++.+... .+.+...+..+..+|...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455888899999999999999999999843 45678889999999999999999999999998876 667899999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHhhHHH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPD-----------LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIK-PNASSFGA 221 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~ 221 (402)
+|...|++++|...|+++.+. .|+ ...+..+...+...|++++|.+.++++.+.... .+..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 999999999999999998654 232 223344578899999999999999999887422 16889999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
+...+...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|...|+++.+... .+..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 9999999999999999999998875 56788999999999999999999999999998632 257889999999999999
Q ss_pred HHHHHHHHHHHHhCCCC-----------CCHHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 302 FEEAKKFYRIMSNSGLS-----------PNSSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
+++|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998864211 1357889999999999999988887654
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=7.1e-18 Score=145.65 Aligned_cols=253 Identities=9% Similarity=0.035 Sum_probs=141.0
Q ss_pred HHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 041936 83 NKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYK 162 (402)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 162 (402)
......|+++.|+...+................+.++|...|+++.|+..++.. + +|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~-~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S-APELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S-CHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C-ChhHHHHHHHHHHHcCCCcHH
Confidence 344456666666666655442111111223344556666666666666544331 1 455556666666666666666
Q ss_pred HHHHHHHHchhhcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 163 EVKRVFIEFPKTYGI-KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 163 ~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
+|++.++++... +. +-+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 83 ~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 83 AIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666665432 22 22344455555666666666666666665 34555666666666666666666666666
Q ss_pred HHHCCCCCChhhH---HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041936 242 MERYGMKSGVSMY---NVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS 318 (402)
Q Consensus 242 ~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 318 (402)
+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+...
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p- 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS- 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 66543 332211 112233334466666666666666552 23555666666666666666666666666665421
Q ss_pred CCHHhHHHHHHHHHccCChHH-HHHHHHHHHhC
Q 041936 319 PNSSVYFTMVYFMCKGGDYET-ALGFCKESIAK 350 (402)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 350 (402)
-+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 145556666666666666654 45566666554
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=2.2e-18 Score=151.53 Aligned_cols=266 Identities=8% Similarity=-0.021 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
..+......+...|++++|..+++.+... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34667777888889999999999888743 34566777788888999999999999999988765 66788888889999
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV--------------IK-AFCESSDSSSAYSILAEMDRKSIKPNASSFG 220 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (402)
...|++++|...++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+..++.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999998886542 2222233332 22 3777889999999999998764 44778899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
.+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998865 45678899999999999999999999999987632 35778899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-----------CHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 041936 301 NFEEAKKFYRIMSNSGLSP-----------NSSVYFTMVYFMCKGGDYETALGFCKESI 348 (402)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (402)
++++|...++++.+..... +...+..+..++...|++++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999988753221 46788899999999999999999887543
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.7e-17 Score=143.31 Aligned_cols=256 Identities=13% Similarity=0.114 Sum_probs=138.9
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSV--GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
.....|+++.|+..++..... .|+. .....+..+|...|+++.|...++.. -+|+..++..+...+...++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCc
Confidence 344456666666666554432 2221 23344555666666666666544321 24455556666666666666
Q ss_pred hhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 197 SSSAYSILAEMDRKSIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
.++|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|...|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666665554323 344445555566666666666666655 3455556666666666666666666666
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 041936 276 EMLSKGMKPNSVTY---SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGW 352 (402)
Q Consensus 276 ~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 352 (402)
++.+.. |+.... ...+..+...|++++|..+|+++.+. ...+...++.+..++.+.|++++|...++++++..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 665542 332211 11222233345666666666666654 22345556666666666666666666666665543
Q ss_pred CCCHHHHHHHHHHHHcCCChHH-HHHHHHHHHhcCCCChh
Q 041936 353 VPNFTTMKSLVTGLAGASKVSE-AKELIGLVKEKFTKNVD 391 (402)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~ 391 (402)
+-+..++..++..+...|+.++ +.++++++.+..|.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 4455566666666666666544 34566666555444443
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=173.05 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=61.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMER---YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFI 293 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 293 (402)
.||+++|++|++.|++++|.++|++|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3555555555555555555555544432 3455555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCH-HHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 294 YGFCKDGNF-EEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 294 ~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
.++++.|+. ++|.++|++|.+.|+.||..+|++++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 555555542 455555555555555555555555543
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.1e-18 Score=154.60 Aligned_cols=290 Identities=10% Similarity=0.054 Sum_probs=136.6
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN 124 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 124 (402)
+-.++...|+.++|.++++... ++.+|..+..++.+.|++++|++.|.+. ++...|..++..+...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence 4445667888999999998872 2358999999999999999999999653 45668889999999999
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSIL 204 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 204 (402)
++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp -----------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999988777664 4567889999999999999999887773 367779999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 205 AEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 205 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .
T Consensus 146 ~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~ 205 (449)
T 1b89_A 146 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----V 205 (449)
T ss_dssp HHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----T
T ss_pred HHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----h
Confidence 977 47999999999999999999999988 368899999999999999999966555422 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC-CCCC------CHH
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK-GWVP------NFT 357 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~ 357 (402)
.+.-...++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++++..+.++....+ +++| +..
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33345578999999999999999999998764 44577888888888765 344444444433322 3333 567
Q ss_pred HHHHHHHHHHcCCChHHHHHHH
Q 041936 358 TMKSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~ 379 (402)
.|.-+...|.+-++++.|....
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHH
Confidence 7888999999999999888753
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=2.2e-14 Score=133.59 Aligned_cols=308 Identities=10% Similarity=0.074 Sum_probs=167.5
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHh----c
Q 041936 52 ESNPEKILEICRAAALTPESHLDRLAFSIAINKLSE----ANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQ----A 123 (402)
Q Consensus 52 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 123 (402)
.++++.|++.|+.+.... +...+..+...+.. .+++++|.+.|++....+ +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 567777777776665431 34566666666666 677777777777766433 33444455556665 5
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh----cC
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI----AKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE----SS 195 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~ 195 (402)
+++++|+..|++..+.| +...+..+...|.. .++.++|.++|++..+. .+...+..+...|.. .+
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCc
Confidence 67777777777766543 34555556666655 56666666666666432 245555555555555 56
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCC------------------------
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYK----EEKYEDVNKVLQMMERYGM------------------------ 247 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~------------------------ 247 (402)
+.++|.++|++..+.| +...+..+...|.. .+++++|...|++..+.+.
T Consensus 202 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A 278 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKA 278 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHH
Confidence 6666666666655543 33444444444443 4555555555555544321
Q ss_pred ---------CCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 041936 248 ---------KSGVSMYNVRIHSLCKL-----RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG---NFEEAKKFYR 310 (402)
Q Consensus 248 ---------~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~ 310 (402)
.-+...+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|.++|+
T Consensus 279 ~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 279 LEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 01222333333444333 44455555554444432 2233344444444433 4455555555
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHH
Q 041936 311 IMSNSGLSPNSSVYFTMVYFMCK----GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG----ASKVSEAKELIGLV 382 (402)
Q Consensus 311 ~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 382 (402)
+..+.| +...+..+...|.. .+++++|..++++..+.+ +...+..+...|.+ .++.++|...|++.
T Consensus 356 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 356 KAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 555542 34455555555555 556666666666665544 34555555555555 56666666666666
Q ss_pred Hhc
Q 041936 383 KEK 385 (402)
Q Consensus 383 ~~~ 385 (402)
.+.
T Consensus 430 ~~~ 432 (490)
T 2xm6_A 430 STN 432 (490)
T ss_dssp HHH
T ss_pred HHC
Confidence 554
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=170.93 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=111.6
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 041936 249 SGVSMYNVRIHSLCKLRKCAEAKALLDEMLS---KGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYF 325 (402)
Q Consensus 249 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 325 (402)
.-..+|+++|++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457899999999999999999999988764 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 041936 326 TMVYFMCKGGDY-ETALGFCKESIAKGWVPNFTTMKSLVTGLAG 368 (402)
Q Consensus 326 ~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (402)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 999999999985 7899999999999999999999998865544
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=3.3e-14 Score=132.34 Aligned_cols=286 Identities=14% Similarity=0.053 Sum_probs=212.2
Q ss_pred CHHHHHHHHHHHHh----cCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHhHhCCCCCCH
Q 041936 74 DRLAFSIAINKLSE----ANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQ----ANMTEHAVRTFKEMDEHKLRHSV 145 (402)
Q Consensus 74 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 145 (402)
+...+..+...+.. .+++++|.+.+++....+ +...+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45667777777777 899999999999988653 45567778888888 899999999999998865 56
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHh
Q 041936 146 GAFNALLLALTI----AKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE----SSDSSSAYSILAEMDRKSIKPNAS 217 (402)
Q Consensus 146 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~ 217 (402)
..+..|...|.. .+++++|..+|++..+. -+...+..+...|.. .+++++|.++|++..+.| +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 777888888988 88999999999998553 366778888888887 789999999999999875 678
Q ss_pred hHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041936 218 SFGALVAGFYK----EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK----LRKCAEAKALLDEMLSKGMKPNSVTY 289 (402)
Q Consensus 218 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~ 289 (402)
.+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88888888887 899999999999998865 45567777777765 678888888888877654 34455
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-----CChHHHHHHHHHHHhCCCCCCHHHHH
Q 041936 290 SHFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKG-----GDYETALGFCKESIAKGWVPNFTTMK 360 (402)
Q Consensus 290 ~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (402)
..+...|.. .++.++|..+|++..+.| +...+..+...|... +++++|..++++..+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 556666665 677777777777776653 344555555555554 66666666666666544 334444
Q ss_pred HHHHHHHcCC---ChHHHHHHHHHHHh
Q 041936 361 SLVTGLAGAS---KVSEAKELIGLVKE 384 (402)
Q Consensus 361 ~l~~~~~~~g---~~~~a~~~~~~~~~ 384 (402)
.+...|.+.| +.++|.+.|++..+
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 4555554434 45555555555554
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.9e-16 Score=132.94 Aligned_cols=238 Identities=13% Similarity=0.058 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC----HhhHH
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSI--KPN----ASSFG 220 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~ 220 (402)
.+..+...+...|++++|...|++..+.. .+...+..+...+...|++++|.+.++++.+... .++ ..++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 44445555555555555555555554332 3444555555555555555555555555444210 011 34555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
.+..++...|++++|...|++..+.. |+. ..+...|++++|...++++..... .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 56666666666666666666665532 332 234455666777777777666521 13456666777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 041936 301 NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIG 380 (402)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 380 (402)
++++|...+++..+... .+...+..+...|...|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777777776532 246677777777777888888888887777654 4457777777888888888888888888
Q ss_pred HHHhcC------CCChhhHHHHHhc
Q 041936 381 LVKEKF------TKNVDTWNEIEAG 399 (402)
Q Consensus 381 ~~~~~~------~~~~~~~~~l~~~ 399 (402)
+..+.. |.+...+..+..+
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHh
Confidence 877765 5555555555443
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.6e-15 Score=139.08 Aligned_cols=339 Identities=11% Similarity=0.001 Sum_probs=231.1
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhc-------CCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhc----C---CCC
Q 041936 42 TRAALTLLKSESNPEKILEICRAAAL-------TPESHLDRLAFSIAINKLSEANYFNGISQYLEELKT----R---PDL 107 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~---~~~ 107 (402)
++..-.+....|+.++|++.++.+.. .........+|+.+...+...|++++|...+++... . ...
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 44455566778999999999977632 111223457899999999999999999999987761 1 112
Q ss_pred CchHHHHHHHHHHHh--cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHchhhcCCCCCHH
Q 041936 108 QNERFHAHSIILYGQ--ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA---LTIAKDYKEVKRVFIEFPKTYGIKPDLD 182 (402)
Q Consensus 108 ~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 182 (402)
....++.....++.. .+++++|+..|++..+.. |.+...+..+..+ +...++.++|++.+++.++.. +.+..
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~ 210 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQY 210 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchH
Confidence 234556555555554 457999999999998875 5566666666555 345677788999998876542 34556
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 041936 183 TYNRVIKAFCE----SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI 258 (402)
Q Consensus 183 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 258 (402)
.+..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 66666555544 467889999999988764 4567789999999999999999999999998865 44566666666
Q ss_pred HHHHcc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 259 HSLCKL-------------------RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 259 ~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
.+|... +..++|...+++..+.... +..++..+...|...|++++|...|++..+....+
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 555322 2356788888887765322 45678889999999999999999999998864433
Q ss_pred CH--HhHHHHHH-HHHccCChHHHHHHHHHHHhCC-----------------------CCCCHHHHHHHHHHHHcCCChH
Q 041936 320 NS--SVYFTMVY-FMCKGGDYETALGFCKESIAKG-----------------------WVPNFTTMKSLVTGLAGASKVS 373 (402)
Q Consensus 320 ~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~ 373 (402)
.. ..+..+.. .....|+.++|...+++.++.. -+.+..+|..+..+|...|+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~ 447 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQ 447 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 22 12233332 3457899999999888876542 1445678899999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041936 374 EAKELIGLVKEKF 386 (402)
Q Consensus 374 ~a~~~~~~~~~~~ 386 (402)
+|++.|++..+..
T Consensus 448 ~A~~~y~kALe~~ 460 (472)
T 4g1t_A 448 QADEDSERGLESG 460 (472)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998863
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.6e-17 Score=147.07 Aligned_cols=251 Identities=10% Similarity=0.144 Sum_probs=112.9
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041936 86 SEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVK 165 (402)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 165 (402)
.+.|++++|.++++++. .+.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 35688999999999973 225899999999999999999999965 367779999999999999999999
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 166 RVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 988777543 5567889999999999999999998885 367789999999999999999999999977
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 041936 246 GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYF 325 (402)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 325 (402)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 36999999999999999999999998 27899999999999999999996655442 23444456
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 041936 326 TMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIG 380 (402)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 380 (402)
.++..|.+.|++++|..+++..+... +-....|+-+.-+|.+- .+++..+-++
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~ 264 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLE 264 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 78999999999999999999998765 56677787777777654 3343333333
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=5.3e-14 Score=132.32 Aligned_cols=345 Identities=8% Similarity=0.015 Sum_probs=236.3
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH-HH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII-LY 120 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~ 120 (402)
+...+.. ...|+.+.|..+++.+.... +.+...|...+..+.+.|++++|..+|+.+.... |+..+|...+. ..
T Consensus 16 w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 16 WSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVR 90 (530)
T ss_dssp HHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHH
Confidence 3344553 55789999999999997653 3367789999999999999999999999998543 36667766664 33
Q ss_pred HhcCCHHHHHH----HHHHhHh-CCCC-CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHchhhcCCCCCHHHHH
Q 041936 121 GQANMTEHAVR----TFKEMDE-HKLR-HSVGAFNALLLALTI---------AKDYKEVKRVFIEFPKTYGIKPDLDTYN 185 (402)
Q Consensus 121 ~~~~~~~~A~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 185 (402)
...|+++.|.+ +|+.... .|.. ++...|...+..... .|+++.|..+|++.++. ...+....|.
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~ 169 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWR 169 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHH
Confidence 45677776665 7776654 3433 467788888887665 78999999999998752 1111122332
Q ss_pred HHHHHH-------------HhcCChh------------------------------------------------------
Q 041936 186 RVIKAF-------------CESSDSS------------------------------------------------------ 198 (402)
Q Consensus 186 ~li~~~-------------~~~~~~~------------------------------------------------------ 198 (402)
...... ...++++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 211100 0011122
Q ss_pred ------HHHHHHHHHHhCCCCCCHhhHHHHHHHHhc-------cCCHH-------HHHHHHHHHHHCCCCCChhhHHHHH
Q 041936 199 ------SAYSILAEMDRKSIKPNASSFGALVAGFYK-------EEKYE-------DVNKVLQMMERYGMKSGVSMYNVRI 258 (402)
Q Consensus 199 ------~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll 258 (402)
.+..+|++.... .+.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++
T Consensus 250 ~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 333344444443 12345566666666654 68876 8889999888632345678888888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHccC
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMKPN-S-VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYF-MCKGG 335 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g 335 (402)
..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++..+... .+...|...... +...|
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcC
Confidence 8899999999999999999885 443 2 4788888888888999999999999887532 123333322222 33588
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCh----hhHHHHH
Q 041936 336 DYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNV----DTWNEIE 397 (402)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~ 397 (402)
+.++|..+|+..++.. +.+...|..++..+.+.|+.++|..+|++.....+.+. ..|...+
T Consensus 406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 9999999999888764 44678888889989999999999999999888644333 2565433
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=8.6e-16 Score=126.73 Aligned_cols=198 Identities=10% Similarity=0.004 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041936 180 DLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH 259 (402)
Q Consensus 180 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 259 (402)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34444455555555555555555555554432 2234445555555555555555555555555443 233444555555
Q ss_pred HHHcc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 041936 260 SLCKL-----------RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMV 328 (402)
Q Consensus 260 ~~~~~-----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 328 (402)
++... |++++|...|++..+.... +...+..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 6666777766666655222 45566666666667777777777777766655 4566666666
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 329 YFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
.+|...|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++.-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 67777777777777777766653 4456666666667777777777776666543
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=5.4e-14 Score=138.87 Aligned_cols=322 Identities=12% Similarity=0.129 Sum_probs=172.4
Q ss_pred CCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHH
Q 041936 36 LTSKDKTRAALTLLKSESNPEKILEICRAAALTPE-SHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHA 114 (402)
Q Consensus 36 ~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 114 (402)
...........+.+...|.|.+|+++++.....+. +.-+...-+.++....+. +..+..++.+.+. .-. ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~~d------~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-NYD------AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-hcc------HH
Confidence 34555667788889999999999999999986654 222344455555554444 3444444444433 111 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCC---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHK---------------------LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
.+...+...|.+++|..+|++..... -.-+..+|..+..++...|++++|++.|.+.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 24444555555555555555531000 0012334444555555555555555555332
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh
Q 041936 174 TYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSM 253 (402)
Q Consensus 174 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (402)
-|...|..++.++.+.|++++|.++|....+.. ++....+.++.+|++.+++++..... + .++...
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 133444445555555555555555554444332 22222223444455554444322221 1 233334
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
|..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++. .+..+|..+..+|..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 444555555555555555555542 24555555555555555555555544 133455555555555
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcCC
Q 041936 334 GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLP 401 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 401 (402)
.|++..|...... +..++..+..++..|.+.|.+++|+.+++......+.....|+-|...|+
T Consensus 1263 ~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred hhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 5555555544332 23456677788899999999999999998887766666667766655543
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=9e-15 Score=123.46 Aligned_cols=210 Identities=14% Similarity=0.063 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHS 260 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (402)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666777777777777777777776653 3356677777777777788888888777777654 3456677777777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH
Q 041936 261 LCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYET 339 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 339 (402)
+...|++++|.++++++.+.+..| +...+..+...+...|++++|...+.+..+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877632334 355677777788888888888888888776532 246677778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHH
Q 041936 340 ALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWN 394 (402)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 394 (402)
|..+++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..|.+...+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888887754 456777777888888888888888888888877666555443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.2e-15 Score=126.44 Aligned_cols=225 Identities=12% Similarity=0.049 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcC-CCCC----HHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG-IKPD----LDTYNR 186 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~----~~~~~~ 186 (402)
.+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+++..+... ..++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444555555555555555555555544 4455555555555555555555555555533210 0011 345555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 041936 187 VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (402)
+...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 555555666666666666655553 2222 23344455666666666655543 2334455556666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
+++|...++++.+.... +..++..+..++...|++++|...+++..+... .+...+..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666666666654222 455566666666666666666666666665421 2355566666666666666666666666
Q ss_pred HHhC
Q 041936 347 SIAK 350 (402)
Q Consensus 347 ~~~~ 350 (402)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6553
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.6e-15 Score=125.14 Aligned_cols=195 Identities=11% Similarity=-0.014 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...+..+...
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 334444444444455555555554444433 3344444444444444555555555444443321 2233344444444
Q ss_pred HHhc-----------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041936 191 FCES-----------SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH 259 (402)
Q Consensus 191 ~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 259 (402)
+... |++++|...|++..+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 4444 55555555555555432 2234445555555555555555555555555544 44455555555
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIM 312 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 312 (402)
+|...|++++|...|++..+.... +...+..+...+...|++++|+..+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555544211 3444555555555555555555555443
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=3e-15 Score=127.94 Aligned_cols=241 Identities=10% Similarity=-0.018 Sum_probs=116.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhc
Q 041936 151 LLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN--ASSFGALVAGFYK 228 (402)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~ 228 (402)
....+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++++.+.+..++ ...|..+...+..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344444444444444444443321 11222444444444455555555555554444211111 1124445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041936 229 EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKF 308 (402)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 308 (402)
.|++++|.+.|++..+.. +.+..++..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554433 2334455555555555555555555555555441 11334444444222233456666666
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCC---hHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHcCCChHHHHHH
Q 041936 309 YRIMSNSGLSPNSSVYFTMVYFMCKGGD---YETALGFCKESIAKG-WVPN------FTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 309 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
|++..+... .+...+..+...+...|+ +++|...++++.+.. -.|+ ..+|..+...|.+.|++++|.+.
T Consensus 165 ~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 665555321 124444455555555555 555665555554431 0122 13555566666666777777777
Q ss_pred HHHHHhcCCCChhhHHHH
Q 041936 379 IGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 379 ~~~~~~~~~~~~~~~~~l 396 (402)
|+++.+..|.|...+..+
T Consensus 244 ~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 244 WKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCccHHHHHHHh
Confidence 776666666666555544
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=5e-14 Score=120.51 Aligned_cols=222 Identities=10% Similarity=-0.010 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhhcCCCCCHHHHH
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI----AKDYKEVKRVFIEFPKTYGIKPDLDTYN 185 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 185 (402)
...+..+...+...|++++|+..|++..+ +.+...+..+...|.. .+++++|...|++..+. + +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHH
Confidence 33444455555555666666666655555 2233445555555555 55555555555555332 1 444555
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 041936 186 RVIKAFCE----SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK----EEKYEDVNKVLQMMERYGMKSGVSMYNVR 257 (402)
Q Consensus 186 ~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (402)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 555555555555555543 44445555555555 555555555555555433 23334444
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 258 IHSLCK----LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 258 l~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444 455555555555544432 23344444444444 455555555555444432 1333444444
Q ss_pred HHHc----cCChHHHHHHHHHHHhC
Q 041936 330 FMCK----GGDYETALGFCKESIAK 350 (402)
Q Consensus 330 ~~~~----~g~~~~a~~~~~~~~~~ 350 (402)
.|.. .+++++|.+++++..+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 4444 44445555554444443
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=1.9e-14 Score=118.93 Aligned_cols=210 Identities=10% Similarity=0.044 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHS 260 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (402)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555555556666666666666555442 2234555556666666666666666666665543 3345556666666
Q ss_pred HHcc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChH
Q 041936 261 LCKL-RKCAEAKALLDEMLSKGMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYE 338 (402)
Q Consensus 261 ~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 338 (402)
+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...+.++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666665222232 45566666667777777777777776665422 23556666777777777777
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHH
Q 041936 339 TALGFCKESIAKGWV-PNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWN 394 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 394 (402)
+|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+..|.+.....
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 7777777766653 3 45666666666667777777777777777665555544443
No 42
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=7.8e-13 Score=124.34 Aligned_cols=340 Identities=8% Similarity=0.017 Sum_probs=235.5
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCCcchHHH----HHHHhhc-CC-CCCchH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKL-SEANYFNGISQ----YLEELKT-RP-DLQNER 111 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~-~~~~~~ 111 (402)
...+..........|+++.|.++|+.+.... |+...|...+... ...|++++|.+ +|+.... .| .+.+..
T Consensus 46 ~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~ 122 (530)
T 2ooe_A 46 GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 122 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHH
Confidence 3445567777778899999999999887553 4566676666533 34577777665 5555542 12 234556
Q ss_pred HHHHHHHHHHh---------cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH-------------HcCCHH-------
Q 041936 112 FHAHSIILYGQ---------ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT-------------IAKDYK------- 162 (402)
Q Consensus 112 ~~~~li~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~------- 162 (402)
+|...+....+ .|+++.|..+|++..+.........|........ ..++++
T Consensus 123 ~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~ 202 (530)
T 2ooe_A 123 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAK 202 (530)
T ss_dssp HHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHH
Confidence 66666665544 5778888888887766211111122322111000 011122
Q ss_pred -----------------------------------------------------HHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 163 -----------------------------------------------------EVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 163 -----------------------------------------------------~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
.+..+|++.+... +-+...|..++.
T Consensus 203 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~ 280 (530)
T 2ooe_A 203 EYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQ 280 (530)
T ss_dssp HHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3444555554332 334556666666
Q ss_pred HHHh-------cCChh-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--hhh
Q 041936 190 AFCE-------SSDSS-------SAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG--VSM 253 (402)
Q Consensus 190 ~~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 253 (402)
.+.+ .|+++ +|.++|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.. |+ ...
T Consensus 281 ~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 358 (530)
T 2ooe_A 281 YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHH
T ss_pred HHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHH
Confidence 6665 68887 899999999873234467889999999999999999999999999853 44 257
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG-FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 332 (402)
|..++..+.+.|++++|..+|++..+... .+...|...... +...|+.++|..+|+...+.. .-+...|..++..+.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999999987632 233333332222 346899999999999988753 225788999999999
Q ss_pred ccCChHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 333 KGGDYETALGFCKESIAKGW-VP--NFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
+.|+.++|..+|++....+. .| ....|...+....+.|+.+.+..+++++.+..|
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999998741 22 244788888888899999999999999988755
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=6.8e-15 Score=125.72 Aligned_cols=244 Identities=11% Similarity=0.068 Sum_probs=148.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC--HHHHHHHHHH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD--LDTYNRVIKA 190 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~ 190 (402)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+. ...++ ...|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHH
Confidence 3344555666777777777777766654 344446666666777777777777777666542 11111 2236666667
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHH
Q 041936 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEA 270 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 270 (402)
+...|++++|.+.|++..+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777666643 2345566777777777777777777777666553 34455555555233333477777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHhHHHHHHHHHccCChHHH
Q 041936 271 KALLDEMLSKGMKPNSVTYSHFIYGFCKDGN---FEEAKKFYRIMSNSG-LSPN------SSVYFTMVYFMCKGGDYETA 340 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a 340 (402)
...|+++.+.... +...+..+..++...|+ +++|...+++..+.. ..|+ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777665221 35566666666666666 666777776665531 1122 24566677777777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH
Q 041936 341 LGFCKESIAKGWVPNFTTMKSL 362 (402)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l 362 (402)
...++++.+.. +.+......+
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHhcC-ccHHHHHHHh
Confidence 88887777654 3344444443
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=4e-15 Score=124.75 Aligned_cols=211 Identities=12% Similarity=0.035 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHS 260 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (402)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555555666666666666666665542 3345556666666666666666666666665543 3345556666666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 041936 261 LCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETA 340 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 340 (402)
+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666665432 2455666666667777777777777776665422 2455666667777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 341 LGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
...++++.+.. +.+..++..+..++.+.|++++|.+.++++.+..+.+...+..+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 77777766653 44566677777777777777777777777777666666665544
No 45
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=4.8e-13 Score=123.81 Aligned_cols=307 Identities=9% Similarity=-0.051 Sum_probs=219.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhc--------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-----
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKT--------RPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH----- 139 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----- 139 (402)
.....|+.+...+...|++++|++.+++... ...+....+|..+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456799999999999999999999987652 123445567888999999999999999999987642
Q ss_pred C--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHhCCC
Q 041936 140 K--LRHSVGAFNALLLALTIA--KDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA---FCESSDSSSAYSILAEMDRKSI 212 (402)
Q Consensus 140 ~--~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~g~ 212 (402)
+ ......++..+..++... +++++|+..|++..+.. +-+...+..+... +...++.++|++.+++..+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 123456677666666554 46999999999987652 2344445444444 445688899999999888764
Q ss_pred CCCHhhHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 041936 213 KPNASSFGALVAGFY----KEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVT 288 (402)
Q Consensus 213 ~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 288 (402)
+.+..++..+...+. ..+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.... +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 335566666655544 3567889999999988765 567788999999999999999999999999886332 4566
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 289 YSHFIYGFCKD-------------------GNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 289 ~~~l~~~~~~~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
+..+..+|... +..+.|...+....+... .+...+..+...|...|++++|...|++.++
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666555322 235677888888776532 2456788899999999999999999999998
Q ss_pred CCCCCCHH--HHHHHHH-HHHcCCChHHHHHHHHHHHhc
Q 041936 350 KGWVPNFT--TMKSLVT-GLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 350 ~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~ 385 (402)
....+... .+..+.. .+...|+.++|++.|++..+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 75333221 2223322 245789999999999887654
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=1.3e-15 Score=130.40 Aligned_cols=183 Identities=11% Similarity=-0.034 Sum_probs=81.7
Q ss_pred CCcchHHHHHHHhhcCCC---CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041936 89 NYFNGISQYLEELKTRPD---LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVK 165 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 165 (402)
|++++|.+.++.+..... +.+...+..+...+...|++++|+..|+++.+.+ +.+..+|..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555543211 1223444445555555555555555555555443 334455555555555555555555
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 166 RVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
..|++..+.. +.+...+..+...+...|++++|.+.|+++.+. .|+.......+..+...|++++|...+++....
T Consensus 98 ~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 98 EAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5555554321 223444555555555555555555555555443 122222222223333444455555555444333
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 246 GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
. +++...+ .++..+...++.++|...+++..
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHC
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHh
Confidence 2 1222222 23333444444444444444443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=4.7e-14 Score=116.62 Aligned_cols=201 Identities=7% Similarity=-0.065 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 34445555555666666666666666655543 3445555555566666666666666665554331 22444555555
Q ss_pred HHHHhc-CChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 041936 189 KAFCES-SDSSSAYSILAEMDRKSIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 189 ~~~~~~-~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (402)
..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 555555 55555555555555521112 23445555555555555555555555554433 2234445555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 313 (402)
+++|...++++.+.....+...+..+...+...|+.+.+..+++.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 55555555555443221233444444444445555555555555544
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=3.5e-15 Score=127.62 Aligned_cols=248 Identities=10% Similarity=0.029 Sum_probs=194.0
Q ss_pred HhcCCHHHHHHHHHHhHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 121 GQANMTEHAVRTFKEMDEHKL---RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
...|++++|+..|+++.+... +.+..++..+..++...|++++|...|++..+.. +.+..+|..+...+...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCH
Confidence 345789999999999987632 1246778889999999999999999999997653 44678899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (402)
++|.+.|+++.+.. +.+..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998864 3467889999999999999999999999998864 55555555556667789999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 041936 278 LSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP---NSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVP 354 (402)
Q Consensus 278 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 354 (402)
.... +++...+. ++..+...++.++|...+.......... +...+..+...|...|++++|...++++.+.. +.
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~ 247 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VH 247 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CT
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-ch
Confidence 7753 23444444 7777888889999999999887653211 15778889999999999999999999999864 22
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHH
Q 041936 355 NFTTMKSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (402)
+.. ....++...|++++|++.+
T Consensus 248 ~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCH---HHHHHHHHHHHHHHC----
T ss_pred hHH---HHHHHHHHHHHHHhhHHHH
Confidence 333 3355677788888888776
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=2.4e-13 Score=116.29 Aligned_cols=229 Identities=10% Similarity=-0.028 Sum_probs=163.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhh
Q 041936 143 HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE----SSDSSSAYSILAEMDRKSIKPNASS 218 (402)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 218 (402)
-+..++..+...+...|++++|+..|++..+ +-+...+..+...|.. .+++++|.++|++..+.+ +...
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3456667777777777888888888877754 3345667777777777 778888888888777765 5667
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041936 219 FGALVAGFYK----EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK----LRKCAEAKALLDEMLSKGMKPNSVTYS 290 (402)
Q Consensus 219 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~ 290 (402)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 7777777777 778888888887777754 55667777777777 778888888888777764 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041936 291 HFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK----GGDYETALGFCKESIAKGWVPNFTTMKSL 362 (402)
Q Consensus 291 ~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (402)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..++++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 67777766 777888888887777653 45566667777777 778888888887777764 25666667
Q ss_pred HHHHHc----CCChHHHHHHHHHHHhcCCCCh
Q 041936 363 VTGLAG----ASKVSEAKELIGLVKEKFTKNV 390 (402)
Q Consensus 363 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 390 (402)
...|.+ .+++++|.+.|++..+..+++.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 777777 7778888888877777644433
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=2.9e-14 Score=120.31 Aligned_cols=200 Identities=12% Similarity=0.051 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
..+..+...+...|++++|.++++.+... .+.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI-DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677777778888888888888887733 34456677777778888888888888888877664 45677777777788
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKP-DLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYED 234 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 234 (402)
...|++++|.++++++.+ .+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888877754 22233 44566677777777777777777777776653 3345666677777777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 235 VNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777766543 345555666666666777777777777776654
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=9.7e-15 Score=130.34 Aligned_cols=234 Identities=9% Similarity=0.016 Sum_probs=172.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD-YKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
....+..+..++...|++++|+..+++..+.+ +-+...|+.+..++...|+ +++|+..|++.++.. +-+...|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 45667777778888899999999999888776 6678888888888888886 999999998887653 4466788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCC
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK-LRK 266 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~ 266 (402)
..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.+ .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 888888888888888888888764 3467788888888888888888888888888765 4567778888888877 555
Q ss_pred HHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC----
Q 041936 267 CAEA-----KALLDEMLSKGMKPNSVTYSHFIYGFCKDG--NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG---- 335 (402)
Q Consensus 267 ~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---- 335 (402)
.++| +..|++.++.... +...|..+...+...| ++++|++.+.++ +. ...+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 4666 4677777765322 4566777777777766 577777777776 32 2234566667777776653
Q ss_pred -----ChHHHHHHHHHH-HhC
Q 041936 336 -----DYETALGFCKES-IAK 350 (402)
Q Consensus 336 -----~~~~a~~~~~~~-~~~ 350 (402)
..++|.++++++ .+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHh
Confidence 246777777777 444
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=2e-14 Score=128.29 Aligned_cols=232 Identities=7% Similarity=-0.005 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM-TEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
...|..+...+...|++++|++.++++.. ..+.+...|..+..++...|+ +++|+..|++..+.+ +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE-LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 45677777777888888888888888773 345566777777778888886 888888888888776 667788888888
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc-cCCH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK-EEKY 232 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~~~~ 232 (402)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|++.|+++++.. +-+...|+.+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 8888888888888888887653 4466778888888888888888888888888764 3367778888888877 5554
Q ss_pred HHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 041936 233 EDV-----NKVLQMMERYGMKSGVSMYNVRIHSLCKLR--KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG----- 300 (402)
Q Consensus 233 ~~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----- 300 (402)
++| +..+++..... +-+...|+.+...+...| ++++|.+.+.++ +. ...+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 666 47777777654 445677777777777777 578888888777 32 2335667777777777763
Q ss_pred ----CHHHHHHHHHHH-Hh
Q 041936 301 ----NFEEAKKFYRIM-SN 314 (402)
Q Consensus 301 ----~~~~a~~~~~~m-~~ 314 (402)
..++|.++++++ .+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE 347 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 247888888887 55
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=9.2e-15 Score=122.54 Aligned_cols=201 Identities=10% Similarity=0.047 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
....|..+...+...|++++|..+++++.. ..+.+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE-ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 334566666666677777777777777663 334455666666666777777777777777766554 445666666667
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE 233 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 233 (402)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 7777777777777776665432 3345556666666666666666666666665542 234555666666666666666
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 234 DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
+|...++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666666665543 334455555666666666666666666665554
No 54
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.64 E-value=9.2e-13 Score=130.27 Aligned_cols=288 Identities=12% Similarity=0.139 Sum_probs=224.6
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 121 (402)
...+-..+...|.+++|.++|+..... ....+.++ ...+++++|.++.++. ....+|..+..++.
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~~------~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDVN------TSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCH------HHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHH
Confidence 344566677888889999998886311 11223332 2678899998888865 34678889999999
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
+.|++++|++.|.+. .|...|..++.++.+.|++++|++.|....+. .++....+.++.+|++.+++++..
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHH
Confidence 999999999999663 66788899999999999999999999887543 344444446999999999988644
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 041936 202 SILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG 281 (402)
Q Consensus 202 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (402)
.+. + .++...|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++..
T Consensus 1188 ~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1188 EFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred HHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 442 2 346677778999999999999999999985 369999999999999999999999873
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 041936 282 MKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKS 361 (402)
Q Consensus 282 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (402)
+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|..+++..+... +-....|+-
T Consensus 1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1249 ---STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred ---CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 67899999999999999999988776533 366778899999999999999999999888665 445567766
Q ss_pred HHHHHHcC--CChHHHHHHHHH
Q 041936 362 LVTGLAGA--SKVSEAKELIGL 381 (402)
Q Consensus 362 l~~~~~~~--g~~~~a~~~~~~ 381 (402)
+...|.+- ++..++.+.|..
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 66666653 344455555543
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=1.4e-14 Score=131.68 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=73.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CCHH
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMK-PN----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL----S-PNSS 322 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~-~~~~ 322 (402)
++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|...+++..+... . ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555555666666666666666655432100 01 12455566666666666666666666554210 0 1134
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAK----G-WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
++..+...|...|++++|...+++..+. + ......++..+...|.+.|++++|.+.+++..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5556666666677777777766666543 1 0111335556666677777777777777766553
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=7.6e-15 Score=132.89 Aligned_cols=299 Identities=10% Similarity=-0.002 Sum_probs=216.0
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCC-C
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQN----ERFHAHSIILYGQANMTEHAVRTFKEMDEH----KLR-H 143 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~-~ 143 (402)
.....+......+...|++++|...++++.... +.+ ...+..+...+...|++++|...+++..+. +-. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345567777888889999999999998888442 222 356777888899999999999999886542 211 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHHhcCC--------------------hhH
Q 041936 144 SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFCESSD--------------------SSS 199 (402)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~--------------------~~~ 199 (402)
...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456778888999999999999998877543211112 3477888888899999 899
Q ss_pred HHHHHHHHHhC----CCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHccCCHHH
Q 041936 200 AYSILAEMDRK----SIK-PNASSFGALVAGFYKEEKYEDVNKVLQMMERYGM-KSG----VSMYNVRIHSLCKLRKCAE 269 (402)
Q Consensus 200 a~~~~~~~~~~----g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~ 269 (402)
|.+.+++..+. +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99888876542 211 1234678888899999999999999988765310 111 3378888889999999999
Q ss_pred HHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHccCChHH
Q 041936 270 AKALLDEMLSK----GMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSP-NSSVYFTMVYFMCKGGDYET 339 (402)
Q Consensus 270 a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 339 (402)
|...+++..+. +..+. ..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999987653 11111 457788889999999999999999987753 1111 14577788889999999999
Q ss_pred HHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCCh
Q 041936 340 ALGFCKESIAK----GW-VPNFTTMKSLVTGLAGASKV 372 (402)
Q Consensus 340 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 372 (402)
|...+++..+. +. .....++..+...+...|+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99999887653 21 12245666677777777665
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=2.4e-14 Score=130.08 Aligned_cols=274 Identities=10% Similarity=0.021 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCch----HHHHHHHHHHHhcCCHHHHHHHHHHhHhC----C-CCCCHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNE----RFHAHSIILYGQANMTEHAVRTFKEMDEH----K-LRHSVG 146 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~ 146 (402)
..+..+...+...|++++|...++++.... +.+. ..+..+...|...|++++|+..+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 445566777888999999999999988542 2232 46778888899999999999999987653 1 123456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhc---C-CCCCHHHHHHHHHHHHhcCC-----------------hhHHHHHHH
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTY---G-IKPDLDTYNRVIKAFCESSD-----------------SSSAYSILA 205 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~ 205 (402)
++..+...|...|++++|...+++..+.. + .+....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78888899999999999999998875431 1 12234578888889999999 999999988
Q ss_pred HHHhC----CC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 206 EMDRK----SI-KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-SG----VSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 206 ~~~~~----g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
+..+. +. .....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 11 112347888889999999999999999988653210 11 2378888999999999999999999
Q ss_pred HHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHccCChHHHHHHHH
Q 041936 276 EMLSKGMK-----PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLS-PNSSVYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 276 ~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
+..+.... ....++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 88753111 11457888899999999999999999988764 111 114577888999999999999999999
Q ss_pred HHHhC
Q 041936 346 ESIAK 350 (402)
Q Consensus 346 ~~~~~ 350 (402)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=7.7e-14 Score=126.26 Aligned_cols=276 Identities=12% Similarity=-0.002 Sum_probs=211.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHchhh---cCCCC-C
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHS----VGAFNALLLALTIAKDYKEVKRVFIEFPKT---YGIKP-D 180 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~ 180 (402)
....+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++..+. .+..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34445567778999999999999999998864 344 357888999999999999999999886432 11122 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----C-CCCHhhHHHHHHHHhccCC--------------------HHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKS----I-KPNASSFGALVAGFYKEEK--------------------YEDV 235 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g----~-~~~~~~~~~l~~~~~~~~~--------------------~~~a 235 (402)
..++..+...+...|++++|...+++..+.. - .....++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 4578888999999999999999999876541 0 1114478888899999999 9999
Q ss_pred HHHHHHHHHC----CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 041936 236 NKVLQMMERY----GM-KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGM-KPN----SVTYSHFIYGFCKDGNFEEA 305 (402)
Q Consensus 236 ~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a 305 (402)
.+.+++..+. +. +....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999876542 11 11245688888999999999999999998875311 112 23788889999999999999
Q ss_pred HHHHHHHHhC----CCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCChHHH
Q 041936 306 KKFYRIMSNS----GLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAK----GW-VPNFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 306 ~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a 375 (402)
...+++..+. +..+. ..++..+...|...|++++|...+++..+. +. .....++..+...|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988753 11111 457788899999999999999999988764 11 11156778889999999999999
Q ss_pred HHHHHHHHhc
Q 041936 376 KELIGLVKEK 385 (402)
Q Consensus 376 ~~~~~~~~~~ 385 (402)
.+.+++..+.
T Consensus 327 ~~~~~~al~~ 336 (406)
T 3sf4_A 327 MHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997764
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=2.9e-14 Score=125.27 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=74.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMK-PN----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSP-NSS 322 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~ 322 (402)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4455555555566666666665555432000 01 225555666666666666666666665432 1000 134
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAK----G-WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
++..+...+...|++++|...++++.+. + ......++..+...|.+.|++++|.+.+++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5566666677777777777777666543 1 0111335666677777777777777777776653
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=4.3e-12 Score=110.51 Aligned_cols=217 Identities=11% Similarity=0.050 Sum_probs=112.6
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHchhhcCCCC-CHHHHHHHHHHH
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTI-------AKDY-------KEVKRVFIEFPKTYGIKP-DLDTYNRVIKAF 191 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 191 (402)
++|..+|++..+.. +.+...|..++..+.. .|++ ++|..+|++.++. +.| +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 45666666666543 4555666666655542 3553 5666666655431 123 334555666666
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC-Hh-hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-ccCCHH
Q 041936 192 CESSDSSSAYSILAEMDRKSIKPN-AS-SFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLC-KLRKCA 268 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~ 268 (402)
...|++++|.++|+++.+. .|+ .. +|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666553 222 22 55555555555666666666666655543 223333332222211 245566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHhHHHHHHHHHccCChHHHHHHHH
Q 041936 269 EAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG-LSP--NSSVYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
+|..+|++..+... -+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666655554321 134455555555555556666666666555541 232 23445555555555555555555555
Q ss_pred HHHhC
Q 041936 346 ESIAK 350 (402)
Q Consensus 346 ~~~~~ 350 (402)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=1.1e-13 Score=121.52 Aligned_cols=275 Identities=9% Similarity=0.014 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CC-CCCH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQN----ERFHAHSIILYGQANMTEHAVRTFKEMDEH----KL-RHSV 145 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~ 145 (402)
...+......+...|++++|..+++++.... +.+ ...+..+...+...|++++|.+.+++..+. +. +...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455666778889999999999999988542 223 366778888999999999999999987642 11 2235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHHhcCC--------------------hhHHH
Q 041936 146 GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFCESSD--------------------SSSAY 201 (402)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~--------------------~~~a~ 201 (402)
.++..+...+...|++++|...+++..+...-.++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 67888899999999999999999987543211222 3478888899999999 99999
Q ss_pred HHHHHHHhC----CC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHccCCHHHHH
Q 041936 202 SILAEMDRK----SI-KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-SG----VSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 202 ~~~~~~~~~----g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~ 271 (402)
+.+++..+. +. .....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887543 11 112446888889999999999999999998764211 11 237888889999999999999
Q ss_pred HHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHccCChHHHH
Q 041936 272 ALLDEMLSKGMK-PN----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLS-PNSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 272 ~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
..+++..+.... .+ ..++..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999988753111 11 457788889999999999999999988754 111 11457778899999999999999
Q ss_pred HHHHHHHhC
Q 041936 342 GFCKESIAK 350 (402)
Q Consensus 342 ~~~~~~~~~ 350 (402)
..++++.+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999876
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=5.2e-13 Score=120.16 Aligned_cols=297 Identities=9% Similarity=-0.012 Sum_probs=202.5
Q ss_pred HHhcCCcchHHHHHHHhhcCC----CCCchHHHHHHHHH--HHhcCCHHHHH-----------HHHHHhHhCCCCCCHHH
Q 041936 85 LSEANYFNGISQYLEELKTRP----DLQNERFHAHSIIL--YGQANMTEHAV-----------RTFKEMDEHKLRHSVGA 147 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~--~~~~~~~~~A~-----------~~~~~~~~~~~~~~~~~ 147 (402)
+.+.+++++|..+++++.... ...+...|..++.. ....++++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 456788999998888876321 12222333333321 22233344444 5666654321 11121
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--C---
Q 041936 148 ------FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFCESSDSSSAYSILAEMDRKS--I--- 212 (402)
Q Consensus 148 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--~--- 212 (402)
+......+...|++++|...|++..+...-.++ ..++..+...|...|++++|...+++..+.. .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556778889999999999888543111222 3578888899999999999999998876531 1
Q ss_pred -CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CC
Q 041936 213 -KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-S----GVSMYNVRIHSLCKLRKCAEAKALLDEMLSK----GM 282 (402)
Q Consensus 213 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~ 282 (402)
.....+++.+..+|...|++++|...+++..+.... + ...++..+..+|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112357888889999999999999999887653100 1 1247888899999999999999999998762 22
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHhHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCC
Q 041936 283 -KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPNSSVYFTMVYFMCKGGD---YETALGFCKESIAKGWVP 354 (402)
Q Consensus 283 -~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~ 354 (402)
+....++..+...|...|++++|...+++..+. +-......+..+...+...|+ +++|..++++.. ..+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHH
Confidence 223567888999999999999999999987753 111122335677888888998 777777776651 1123
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 355 NFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
....+..+...|.+.|++++|.+.+++..+.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456778899999999999999999988763
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=1.4e-12 Score=104.28 Aligned_cols=167 Identities=10% Similarity=-0.032 Sum_probs=96.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
+..+|..+...|.+.|++++|++.|++..+.+ +-+..++..+..+|...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 34455566666666666666666666665554 4455566666666666666666666666654332 23344555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
..+...++++.+.+.+.+..+.. +.+...+..+..++.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 55666666666666666555542 2345555555666666666666666666555543 334555555556666666666
Q ss_pred HHHHHHHHHHHC
Q 041936 269 EAKALLDEMLSK 280 (402)
Q Consensus 269 ~a~~~~~~~~~~ 280 (402)
+|.+.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 666666655543
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=3e-13 Score=108.26 Aligned_cols=166 Identities=9% Similarity=0.027 Sum_probs=88.3
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041936 216 ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG 295 (402)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 295 (402)
..+|..+...|...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 4445555555555555555555555555443 334445555555555555555555555555544222 33444445555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHH
Q 041936 296 FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 375 (402)
+...++++.|...+.+...... -+...+..+...|...|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 5555555555555555554321 134455555555555666666666665555543 34455555555666666666666
Q ss_pred HHHHHHHHhc
Q 041936 376 KELIGLVKEK 385 (402)
Q Consensus 376 ~~~~~~~~~~ 385 (402)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666655554
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=8.8e-12 Score=108.53 Aligned_cols=217 Identities=10% Similarity=0.060 Sum_probs=130.9
Q ss_pred chHHHHHHHhhcCCCCCchHHHHHHHHHHH-------hcCCH-------HHHHHHHHHhHh-CCCCCCHHHHHHHHHHHH
Q 041936 92 NGISQYLEELKTRPDLQNERFHAHSIILYG-------QANMT-------EHAVRTFKEMDE-HKLRHSVGAFNALLLALT 156 (402)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 156 (402)
++|..+|++... ..+.+...|..++..+. +.|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~-~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLL-VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 456666666663 23455556666655554 24664 677777777665 23 445556667777777
Q ss_pred HcCCHHHHHHHHHHchhhcCCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh-ccCCHH
Q 041936 157 IAKDYKEVKRVFIEFPKTYGIKPD-LD-TYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFY-KEEKYE 233 (402)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~ 233 (402)
..|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 777777777777766532 343 22 56666666667777777777777776653 223334433322221 256777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041936 234 DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG-MKP--NSVTYSHFIYGFCKDGNFEEAKKFYR 310 (402)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~ 310 (402)
+|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++......|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777666543 3455666666667777777777777777776652 233 24456666666666777777777777
Q ss_pred HHHhC
Q 041936 311 IMSNS 315 (402)
Q Consensus 311 ~m~~~ 315 (402)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76664
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=6.4e-14 Score=121.92 Aligned_cols=170 Identities=18% Similarity=0.097 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc------C
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEH-------KLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY------G 176 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~ 176 (402)
...+..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++..+.. .
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344445555555555666555555555441 112233445555556666666666666655553321 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC----
Q 041936 177 IKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK------SI-KPNASSFGALVAGFYKEEKYEDVNKVLQMMERY---- 245 (402)
Q Consensus 177 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 245 (402)
.+....++..+...|...|++++|.+.++++.+. +. +.....+..+...+...|++++|.+.++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1122344555555666666666666666555432 11 112334555555566666666666666555442
Q ss_pred --C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 246 --G-MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 246 --~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
+ .+....++..+..+|...|++++|...++++.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 011223445555555555566655555555543
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=3.5e-13 Score=124.58 Aligned_cols=192 Identities=7% Similarity=-0.113 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHHhcCCH-HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMT-EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|++..+. .|+...+..+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~l 176 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---CKNKVSLQNL 176 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCHHHHHHH
Confidence 344444444444455555 55555555444433 333444444555555555555555555444322 3444444444
Q ss_pred HHHHHhc---------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc--------CCHHHHHHHHHHHHHCCCC--
Q 041936 188 IKAFCES---------SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKE--------EKYEDVNKVLQMMERYGMK-- 248 (402)
Q Consensus 188 i~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~-- 248 (402)
...+... |++++|.+.|++..+.. +.+...|..+..+|... |++++|.+.|++..+.. +
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCc
Confidence 4444444 44444444444444432 22334444444444444 44444444444444432 1
Q ss_pred -CChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041936 249 -SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 249 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
.+...|..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|..
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444444444444444444444444433111 23334444444444444444443
No 68
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=1.3e-12 Score=119.92 Aligned_cols=313 Identities=8% Similarity=-0.025 Sum_probs=184.1
Q ss_pred HHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCc---chHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 041936 47 TLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYF---NGISQYLEELKTRPDLQNERFHAHSIILYGQA 123 (402)
Q Consensus 47 ~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 123 (402)
..+...|+++.|+++|+...... +...+..+...+...|+. ++|.++|++.... +...+..+...+...
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 34445677888888887765432 122444455555556666 7788887777633 333344444434444
Q ss_pred C-----CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH-----------------------------------cC----
Q 041936 124 N-----MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI-----------------------------------AK---- 159 (402)
Q Consensus 124 ~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------------------~~---- 159 (402)
+ ++++|+..|++..+.|. ++ .+..|...|.. .+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 3 67778888887776652 22 33333333333 33
Q ss_pred CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc----CCH
Q 041936 160 DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS---DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKE----EKY 232 (402)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----~~~ 232 (402)
..+.+..++.... ..+...+..|...|...| +.++|+++|++..+.| .++...+..+...|... +++
T Consensus 160 ~~~~a~~~~~~a~-----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 160 HLDDVERICKAAL-----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GHHHHHHHHHHHT-----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 2233333333332 223336777778888888 8888888888888876 44555556677777554 688
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHH-H--HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 041936 233 EDVNKVLQMMERYGMKSGVSMYNVRIHS-L--CKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG-----NFEE 304 (402)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~ 304 (402)
++|.+.|++.. . -+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 88888888877 3 345556666665 3 45788888888888888776 5666667777766 45 8888
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHH
Q 041936 305 AKKFYRIMSNSGLSPNSSVYFTMVYFMCK----GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG----ASKVSEAK 376 (402)
Q Consensus 305 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 376 (402)
|..+|++.. . -+...+..+...|.. ..++++|..+|++..+.| +......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 888888877 3 355666677776765 348888888888888876 33445556666654 45788888
Q ss_pred HHHHHHHhcCCCChh
Q 041936 377 ELIGLVKEKFTKNVD 391 (402)
Q Consensus 377 ~~~~~~~~~~~~~~~ 391 (402)
.+|+...+...++..
T Consensus 379 ~~~~~A~~~g~~~a~ 393 (452)
T 3e4b_A 379 VFSQLAKAQDTPEAN 393 (452)
T ss_dssp HHHHHHHTTCCHHHH
T ss_pred HHHHHHHHCCCHHHH
Confidence 888888776444433
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=2.8e-12 Score=115.38 Aligned_cols=305 Identities=10% Similarity=0.019 Sum_probs=210.7
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCC-CC--CCCHHHHHHHHHH--HHhcCCcchHH-----------HHHHHhhcC
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTP-ES--HLDRLAFSIAINK--LSEANYFNGIS-----------QYLEELKTR 104 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~-~~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~ 104 (402)
.++.+...+. .++.+.|.++.+.....- .. .++...|-.++.. ....++++.+. +.++.+...
T Consensus 15 ~l~~w~~~i~-~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~ 93 (383)
T 3ulq_A 15 KINEWYMYIR-RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK 93 (383)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc
Confidence 4455555555 568888888887764321 11 2233333333332 11223444444 667666532
Q ss_pred CCCCch----HHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc
Q 041936 105 PDLQNE----RFHAHSIILYGQANMTEHAVRTFKEMDEH----KLRH-SVGAFNALLLALTIAKDYKEVKRVFIEFPKTY 175 (402)
Q Consensus 105 ~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 175 (402)
+...+. ..+......+...|++++|+..|++..+. +-++ ...++..+..+|...|++++|...+++..+..
T Consensus 94 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 173 (383)
T 3ulq_A 94 QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY 173 (383)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 211111 12223556788999999999999998763 1111 34678889999999999999999998875532
Q ss_pred CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 176 GIKPD-----LDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIK-PNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 176 ~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
.-.++ ..+++.+...|...|++++|.+.+++..+. +-. ....++..+..+|...|++++|.+.+++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 174 KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22222 457888999999999999999999988753 111 11247888999999999999999999988762
Q ss_pred ----CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 041936 246 ----GM-KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG----MKPNSVTYSHFIYGFCKDGN---FEEAKKFYRIMS 313 (402)
Q Consensus 246 ----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~ 313 (402)
+. +....++..+...|.+.|++++|...+++..+.. -......+..+...+...|+ +++|..++++.
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~- 332 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK- 332 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-
Confidence 22 3446778889999999999999999999887531 11122345678888888998 67777777665
Q ss_pred hCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 314 NSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 314 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
+..|+ ...+..+...|...|++++|...+++..+
T Consensus 333 --~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 --MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333 45677889999999999999999998865
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.51 E-value=4.9e-12 Score=113.52 Aligned_cols=311 Identities=8% Similarity=-0.040 Sum_probs=204.7
Q ss_pred CCCCHHHHHHHHHHH--HhcCCcchHHHHHHHhhcCC----CCCchHHHHHHHHH--HHhcCCHHHHH---------HHH
Q 041936 71 SHLDRLAFSIAINKL--SEANYFNGISQYLEELKTRP----DLQNERFHAHSIIL--YGQANMTEHAV---------RTF 133 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~--~~~~~~~~~A~---------~~~ 133 (402)
..|+..+-..+-..+ ...+++++|.++++++.... ...+..+|..++.. ..-.+.++.+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 344555555565565 77889999999998876221 12223333333332 11112222222 555
Q ss_pred HHhHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHH
Q 041936 134 KEMDEHKLRHSV----GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFCESSDSSSAYSILA 205 (402)
Q Consensus 134 ~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~ 205 (402)
+.+.....+.+. ..+......+...|++++|+..|++..+...-.++ ..++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 554432111111 12233455667889999999999887543221233 4567888889999999999999998
Q ss_pred HHHhC----CC-CC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 206 EMDRK----SI-KP-NASSFGALVAGFYKEEKYEDVNKVLQMMERY----GMK-SGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 206 ~~~~~----g~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
+..+. +. .+ ...+++.+..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87653 11 11 2456788889999999999999999887652 111 12356778888999999999999999
Q ss_pred HHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHhHHHHHHHHHccCC---hHHHHH
Q 041936 275 DEMLS-----KGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL----SPNSSVYFTMVYFMCKGGD---YETALG 342 (402)
Q Consensus 275 ~~~~~-----~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~ 342 (402)
++..+ .... ...++..+...+.+.|++++|...+++..+... ......+..+...+...++ +.+|..
T Consensus 246 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99887 4222 366788889999999999999999999876421 1123445666667777888 777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 343 FCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
++++.. ..+.....+..+...|.+.|++++|.+.|++..+
T Consensus 325 ~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 766521 1122345667788999999999999999998865
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=8.7e-13 Score=121.90 Aligned_cols=214 Identities=11% Similarity=0.010 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY-KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSI 203 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 203 (402)
.+++++..++...... +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3567777777766544 56778888888888888998 99999988886653 34577888888888888999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhcc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc--------CC
Q 041936 204 LAEMDRKSIKPNASSFGALVAGFYKE---------EKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKL--------RK 266 (402)
Q Consensus 204 ~~~~~~~g~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~ 266 (402)
|++..+. .|+...+..+..++... |++++|.+.|++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 8888876 46677888888888888 88888888888887765 45677788888888877 88
Q ss_pred HHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 041936 267 CAEAKALLDEMLSKGMK--PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFC 344 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 344 (402)
+++|...|++..+.... -+...|..+..+|...|++++|...|++..+... -+...+..+...+...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888775220 2667788888888888888888888888877532 24556777777777777777777654
Q ss_pred H
Q 041936 345 K 345 (402)
Q Consensus 345 ~ 345 (402)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=119.34 Aligned_cols=171 Identities=9% Similarity=0.035 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcC-------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC------C
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTR-------PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH------K 140 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~ 140 (402)
+..++..+...+...|++++|..+++++... ..+.....+..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888888999999999999999888742 34455677888888999999999999999988753 2
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc-----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 041936 141 -LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY-----GI-KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK--- 210 (402)
Q Consensus 141 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 210 (402)
.+....++..+...|...|++++|...+++..+.. +. +.....+..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 13345678889999999999999999999886542 22 224556888899999999999999999988764
Q ss_pred ---CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 211 ---SIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 211 ---g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
+..| ...++..+..++...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 345788889999999999999999998875
No 73
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=9.1e-12 Score=114.35 Aligned_cols=250 Identities=11% Similarity=0.068 Sum_probs=179.7
Q ss_pred HHHHHHHHhcCCHH----HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHchhhcCCCCCHHHHHH
Q 041936 114 AHSIILYGQANMTE----HAVRTFKEMDEHKLRHSVGAFNALLLALTIAK---DYKEVKRVFIEFPKTYGIKPDLDTYNR 186 (402)
Q Consensus 114 ~~li~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~ 186 (402)
..+...|...+.++ .+..+++... ..+...+..|..+|...| +.++|+.+|++..+.. +++...+..
T Consensus 145 ~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~ 218 (452)
T 3e4b_A 145 LAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDS 218 (452)
T ss_dssp HHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 34444455555333 3333333332 223337888889999999 9999999999986542 556666677
Q ss_pred HHHHHHhc----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041936 187 VIKAFCES----SDSSSAYSILAEMDRKSIKPNASSFGALVAG-F--YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH 259 (402)
Q Consensus 187 li~~~~~~----~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 259 (402)
+...|... +++++|.++|++.. .| +...+..+... + ...+++++|.+.|++..+.| +...+..+..
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~ 291 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGK 291 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 77777665 79999999999988 43 56677777776 4 56899999999999999876 5667777877
Q ss_pred HHHccC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041936 260 SLCKLR-----KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYF 330 (402)
Q Consensus 260 ~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 330 (402)
.|. .| ++++|...|++.. .| +...+..+...|.. ..++++|..+|.+..+.|. ......|...
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~ 363 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQL 363 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHH
Confidence 777 55 9999999999888 33 56677777777766 4499999999999998764 3455666667
Q ss_pred HHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 331 MCK----GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 331 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
|.. ..+.++|..+++...+.| .++.......+......++.++|.++.++..+.
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 764 458999999999999988 333333333333334455677888888776553
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=2.8e-11 Score=108.35 Aligned_cols=303 Identities=7% Similarity=-0.052 Sum_probs=199.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhcCCCCCch----HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CCCH----HHH
Q 041936 78 FSIAINKLSEANYFNGISQYLEELKTRPDLQNE----RFHAHSIILYGQANMTEHAVRTFKEMDEHKL-RHSV----GAF 148 (402)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~ 148 (402)
+......+...|++++|...++.........+. ..+..+...+...|++++|.+.+++..+... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455666789999999999887744322222 2455566778888999999999988764210 1122 335
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhc---CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--CHhh
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTY---GIK--P-DLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIK--P--NASS 218 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~--~~~~ 218 (402)
..+...+...|++++|...+++..+.. +.. | ....+..+...+...|++++|...+++..+.... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667778888999999999998875432 221 2 2345666778888899999999999887754221 1 2345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGV-SMYN-----VRIHSLCKLRKCAEAKALLDEMLSKGMKPN---SVTY 289 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~ 289 (402)
+..+...+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 677788888899999999999887653211111 1122 233446788999999999888775432211 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPNS-SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVT 364 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (402)
..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++..... +. .-.+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 66778888889999999988887643 222222 255666777888899999999998888752 11 11234
Q ss_pred HHHcCCChHHHHHHHHHHHhcCCC
Q 041936 365 GLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 365 ~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
.+...| +....+++.+....+.
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHcc--HHHHHHHHHHHhCCCC
Confidence 455555 6677778777765443
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=2e-11 Score=97.17 Aligned_cols=158 Identities=9% Similarity=0.015 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHh
Confidence 33334444444444444444443332 2333444444444444444444444444443221 22233344444444444
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
|++++|.+.++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444443321 1233333333444444444444444444433322 222333333333344444444444444
Q ss_pred HHH
Q 041936 275 DEM 277 (402)
Q Consensus 275 ~~~ 277 (402)
++.
T Consensus 168 ~~~ 170 (186)
T 3as5_A 168 KKA 170 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.44 E-value=8.1e-11 Score=105.31 Aligned_cols=266 Identities=9% Similarity=-0.023 Sum_probs=161.7
Q ss_pred HhcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHhhc----CCCCC-chHHHHHHHHH
Q 041936 49 LKSESNPEKILEICRAAALTPESHLDR----LAFSIAINKLSEANYFNGISQYLEELKT----RPDLQ-NERFHAHSIIL 119 (402)
Q Consensus 49 l~~~~~~~~al~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~ 119 (402)
+...|+++.|.+.++......+. .+. ..+..+...+...|++++|.+.+++... .+... ....+..+...
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34567888888888776543221 122 2455556667777888888888877662 11111 11224456667
Q ss_pred HHhcCCHHHHHHHHHHhHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCC---CCCHHHHHHHHH
Q 041936 120 YGQANMTEHAVRTFKEMDEH----KLR--H-SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGI---KPDLDTYNRVIK 189 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~ 189 (402)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++......- .....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 77888888888888776542 211 2 2345566777778888888888888776543211 112345667777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC--HhhHH----HHHHHHhccCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKPN--ASSFG----ALVAGFYKEEKYEDVNKVLQMMERYGMKSG---VSMYNVRIHS 260 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~ 260 (402)
.+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 77888888888888887764311111 11111 223346677888888888877765332111 2245566677
Q ss_pred HHccCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 261 LCKLRKCAEAKALLDEMLSK----GMKPNS-VTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+.+....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 77888888888888776542 222222 25556667777788888888888877764
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=2.2e-11 Score=109.21 Aligned_cols=303 Identities=9% Similarity=0.019 Sum_probs=206.7
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCC-CC--CCCHHHHHHHHHH--HHhcCCcchHH---------HHHHHhhcCCCC
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTP-ES--HLDRLAFSIAINK--LSEANYFNGIS---------QYLEELKTRPDL 107 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~-~~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~~~~~~~~ 107 (402)
++.....+. .++.+.|.++++...... .. ..+...|-.++.. ..-.+.++.+. +.++.+.....+
T Consensus 16 l~~wy~~i~-~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 94 (378)
T 3q15_A 16 INEWYKMIR-QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK 94 (378)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH
T ss_pred HHHHHHHHH-HcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC
Confidence 334444444 668899999988753211 11 1233333444332 12224444444 667766532221
Q ss_pred Cch----HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCC
Q 041936 108 QNE----RFHAHSIILYGQANMTEHAVRTFKEMDEHKL-RH----SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIK 178 (402)
Q Consensus 108 ~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 178 (402)
.+. ..+......+...|++++|+..|++..+... .+ ...++..+..+|...|+++.|...+++..+...-.
T Consensus 95 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 111 1233345567899999999999999875321 12 24578889999999999999999998875432211
Q ss_pred C-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHH----
Q 041936 179 P-----DLDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIK-PNASSFGALVAGFYKEEKYEDVNKVLQMMER---- 244 (402)
Q Consensus 179 p-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 244 (402)
+ ...+++.+...|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|...+++..+
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 2 2457888999999999999999999987653 211 1235788899999999999999999998876
Q ss_pred -CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC
Q 041936 245 -YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK---P-NSVTYSHFIYGFCKDGN---FEEAKKFYRIMSNSG 316 (402)
Q Consensus 245 -~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~ 316 (402)
.. +....++..+...+.+.|++++|...+++..+.... | ....+..+...+...++ +++|+..++. .+
T Consensus 255 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~ 330 (378)
T 3q15_A 255 KVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KN 330 (378)
T ss_dssp HCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TT
T ss_pred hCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CC
Confidence 33 334677888999999999999999999998874221 2 23456666677777888 7777777765 32
Q ss_pred CCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 317 LSPN-SSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 317 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
..|+ ...+..+...|...|++++|...+++..+
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2233 35667888999999999999999998865
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=4.1e-11 Score=95.39 Aligned_cols=166 Identities=10% Similarity=0.060 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (402)
...+..+...+...|++++|.+.++.+.. ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYD-ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCC-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34577778888899999999999999874 345567788888999999999999999999998775 6678889999999
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYED 234 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 234 (402)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999986653 4567888899999999999999999999998764 4467889999999999999999
Q ss_pred HHHHHHHHHHC
Q 041936 235 VNKVLQMMERY 245 (402)
Q Consensus 235 a~~~~~~~~~~ 245 (402)
|...+++..+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999988764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=5.2e-11 Score=98.67 Aligned_cols=208 Identities=11% Similarity=0.095 Sum_probs=163.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 041936 178 KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVR 257 (402)
Q Consensus 178 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (402)
+.|+..+......+...|++++|.+.|++..+...+++...+..+..++...|++++|++.+++..+.. +.+...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346688889999999999999999999999887543677888889999999999999999999999875 4567788999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHH
Q 041936 258 IHSLCKLRKCAEAKALLDEMLSKGMKPNS-------VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN---SSVYFTM 327 (402)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l 327 (402)
..+|...|++++|...+++..+.... +. ..|..+...+...|++++|+..|++..+. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999886322 34 45778888899999999999999999885 454 4567777
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 328 VYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
..+|... +..+++++...+ ..+...|.... ....+.+++|...+++..+..|.+......+-
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 7777544 445566666554 33455554443 33456789999999999998888877666553
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=2.6e-11 Score=116.77 Aligned_cols=167 Identities=13% Similarity=0.053 Sum_probs=109.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 108 QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
.+...+..+..+|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|+..|++.++.. +-+...|..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 345566666666777777777777777766654 4456666677777777777777777777665442 2345566677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (402)
...+...|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|++..+.. +-+...|..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 777777777777777777666643 2345666777777777777777777777766654 34456666677777777777
Q ss_pred HHHHHHHHHHHH
Q 041936 268 AEAKALLDEMLS 279 (402)
Q Consensus 268 ~~a~~~~~~~~~ 279 (402)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666666543
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=2.8e-11 Score=116.52 Aligned_cols=166 Identities=13% Similarity=0.048 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041936 180 DLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH 259 (402)
Q Consensus 180 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 259 (402)
+..+|+.|...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35567777777777777777777777766652 2245666777777777777777777777766654 344566666777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYET 339 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 339 (402)
+|.+.|++++|++.|++..+.... +...|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 777777777777777776665222 4556666666777777777777777766664211 35566666666666777777
Q ss_pred HHHHHHHHHh
Q 041936 340 ALGFCKESIA 349 (402)
Q Consensus 340 a~~~~~~~~~ 349 (402)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.36 E-value=1.4e-11 Score=105.20 Aligned_cols=157 Identities=11% Similarity=0.049 Sum_probs=74.9
Q ss_pred hcCCcchHHHHHHHhhc-------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC------C-CCCCHHHHHHHH
Q 041936 87 EANYFNGISQYLEELKT-------RPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH------K-LRHSVGAFNALL 152 (402)
Q Consensus 87 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~ 152 (402)
..|++++|..++++... ...+.....+..+...|...|++++|+..+++..+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666666655441 112233445555566666666666666666655432 1 112234455555
Q ss_pred HHHHHcCCHHHHHHHHHHchhhc-----C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHhhH
Q 041936 153 LALTIAKDYKEVKRVFIEFPKTY-----G-IKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK------SIKP-NASSF 219 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~~~~~~-----~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~ 219 (402)
.+|...|++++|...+++..+.. . .+....++..+...|...|++++|...++++.+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 55666666666666655553320 0 0112334444555555555555555555544432 0011 12334
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Q 041936 220 GALVAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~ 243 (402)
..+..++...|++++|...+++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444455555554444443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=2.1e-10 Score=94.99 Aligned_cols=207 Identities=10% Similarity=0.002 Sum_probs=158.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGA 221 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (402)
+.++..+......+...|++++|+..|++..+.. -+++...+..+..++...|++++|.+.+++..+.. +.+...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 4567888999999999999999999999997653 12677788889999999999999999999999874 336778999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSGV-------SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN---SVTYSH 291 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ 291 (402)
+..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 9999999999999999999998865 3344 45788888899999999999999999876 454 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSL 362 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (402)
+..+|...| ...++.+...+. .+...|.... ....+.+++|...+++..+.. +-+..+...+
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 777776544 444555555432 2344444443 234567899999999998864 3344444433
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=2.5e-11 Score=103.71 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=119.8
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcC------C-CCCchHHHHHHHHHHHhcCCH
Q 041936 54 NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTR------P-DLQNERFHAHSIILYGQANMT 126 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~ 126 (402)
..++|+++++..... .......++..+...+...|++++|...++++... + .+.....+..+...|...|++
T Consensus 23 ~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 101 (283)
T 3edt_B 23 LCKQALEDLEKTSGH-DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 101 (283)
T ss_dssp HHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH
Confidence 344555555444322 22335678889999999999999999999998732 2 344567788889999999999
Q ss_pred HHHHHHHHHhHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh------cCCCCCHHHHHHHHHHHHh
Q 041936 127 EHAVRTFKEMDEH------K-LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT------YGIKPDLDTYNRVIKAFCE 193 (402)
Q Consensus 127 ~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~p~~~~~~~li~~~~~ 193 (402)
++|.+.|++..+. . .+....++..+...+...|++++|...+++..+. ...+....++..+...|..
T Consensus 102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998764 1 1334677888999999999999999999998654 1122245678899999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 041936 194 SSDSSSAYSILAEMDRK 210 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~ 210 (402)
.|++++|.+.++++.+.
T Consensus 182 ~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 182 QGKYQDAETLYKEILTR 198 (283)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988763
No 85
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=5.6e-09 Score=99.52 Aligned_cols=322 Identities=7% Similarity=-0.022 Sum_probs=181.3
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHhHhCC-CCCCHHHH
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM---TEHAVRTFKEMDEHK-LRHSVGAF 148 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~-~~~~~~~~ 148 (402)
-|...|..++..+.+.+.++.+..+|+.+.. ..|.....|...+..-.+.++ ++.+..+|+...... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~-~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHD-RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 3778888888888888888889999988883 367777888888888788888 888999998887653 23788888
Q ss_pred HHHHHHHHHcCCH--------HHHHHHHHHchhhcCC-CCC-HHHHHHHHHHHH---------hcCChhHHHHHHHHHHh
Q 041936 149 NALLLALTIAKDY--------KEVKRVFIEFPKTYGI-KPD-LDTYNRVIKAFC---------ESSDSSSAYSILAEMDR 209 (402)
Q Consensus 149 ~~l~~~~~~~~~~--------~~a~~~~~~~~~~~~~-~p~-~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~ 209 (402)
...+....+.++. +.+.++|+..+...|. .++ ...|...+.... ..++++.+.++|++++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8877766555443 3345777777666666 554 456666665432 22345566666666664
Q ss_pred CCCCCCHhhHH---HHHHHHh----------ccCCHHH------------------------------------------
Q 041936 210 KSIKPNASSFG---ALVAGFY----------KEEKYED------------------------------------------ 234 (402)
Q Consensus 210 ~g~~~~~~~~~---~l~~~~~----------~~~~~~~------------------------------------------ 234 (402)
.....-..+|. .....+. ...+++.
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 21111111211 1110000 0000111
Q ss_pred -------------------------HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCCHHH
Q 041936 235 -------------------------VNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAK-ALLDEMLSKGMKPNSVT 288 (402)
Q Consensus 235 -------------------------a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~p~~~~ 288 (402)
+..+|++..... +-....|-..+..+...|+.++|. .+|++.... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 122222222211 122333334444444556666665 777766653 2234445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------HHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSG---------LSPN------------SSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
|...+......|++++|.++|+.+.... ..|+ ...|...+....+.|+.+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5556666666777777777777766531 0121 234666666666667777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 348 IAKGWVPNFTTMKSLVTGLAGA-SKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
.+.........|...+..-.+. ++.+.|..+|+...+..+.+...|...+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~ 511 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYL 511 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 6651122233333333333333 3467777777777776666666665444
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.28 E-value=4.5e-08 Score=93.34 Aligned_cols=204 Identities=11% Similarity=0.030 Sum_probs=125.4
Q ss_pred HHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC---------CCC---
Q 041936 184 YNRVIKAFCESSDSSSAY-SILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGM---------KSG--- 250 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~--- 250 (402)
|-..+.-+...|+.++|. ++|++.... .+.+...|...+...-+.|++++|.++|+.+.+... .|+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 333444444566677775 777777654 344555566666667777778888877777765310 121
Q ss_pred ---------hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCC
Q 041936 251 ---------VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKD-GNFEEAKKFYRIMSNSGLSPN 320 (402)
Q Consensus 251 ---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~ 320 (402)
..+|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+. ++.+.|.++|+...+. ..-+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCc
Confidence 2356666676667777778888887777651111223333322222233 4477888888777765 2224
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 321 SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVP--NFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
...+...+......|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+..+.+++.+..|.+
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4555666666667778888888888777653211 34566777777777788888888888887766544
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.26 E-value=3.5e-09 Score=89.96 Aligned_cols=245 Identities=8% Similarity=-0.038 Sum_probs=151.5
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 82 INKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
++...-.|++..++.-...+. ..........+.++|...|+++.. ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 444556788888777333322 122223344456777777776642 11234444444444333 222
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSI-KPNASSFGALVAGFYKEEKYEDVNKVLQ 240 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (402)
|+..|++.... + +++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 --a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 --NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp --CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 67777776543 2 45555666777888888888888888888766653 2356677778888888888888888888
Q ss_pred HHHHCCCCC-----ChhhHHHHHHH--HHc--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 241 MMERYGMKS-----GVSMYNVRIHS--LCK--LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRI 311 (402)
Q Consensus 241 ~~~~~~~~~-----~~~~~~~ll~~--~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (402)
+|.+. .| +..+...+..+ ... .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88765 35 24444555544 222 33788888888887655 34533334445577888888888888886
Q ss_pred HHhC-----CC----CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 312 MSNS-----GL----SPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 312 m~~~-----~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
+.+. .. .-|+.+...+|......|+ +|.++++++.+..
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6542 00 2245566455555555666 7778888887763
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=9.9e-10 Score=94.67 Aligned_cols=193 Identities=10% Similarity=0.031 Sum_probs=96.7
Q ss_pred HHHHcCCHHHHHHHHHHchhh---cCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKT---YGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIKP-NASSFGALVA 224 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~ 224 (402)
.|...|++++|...|.+..+. .|-+++ ..+|+.+...|...|++++|+..|++..+. |-.. -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555544321 111111 234555555555566666665555554432 1000 0234556666
Q ss_pred HHhcc-CCHHHHHHHHHHHHHCCCCC-C----hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH------HHHHHH
Q 041936 225 GFYKE-EKYEDVNKVLQMMERYGMKS-G----VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS------VTYSHF 292 (402)
Q Consensus 225 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l 292 (402)
+|... |++++|+..|++..+..... + ..++..+...+.+.|++++|...|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 67777766666655421000 0 234566666666777777777777766664322111 134555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HhHHHHHHHHH--ccCChHHHHHHHHHHH
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNS------SVYFTMVYFMC--KGGDYETALGFCKESI 348 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 348 (402)
..++...|++++|...|++..+. .|+. ..+..++.+|. ..+++++|...|+.+.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 66666677777777777666553 2221 12333444443 3445556665554443
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=1.3e-08 Score=86.51 Aligned_cols=240 Identities=10% Similarity=0.026 Sum_probs=135.8
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAV 130 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 130 (402)
-.|++..++.-.... .+ ..++ ..-..+.+++...|+++.. ....+....+..+. .|...+ |+
T Consensus 25 y~G~yq~~i~e~~~~--~~-~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~ 86 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKF--SK-VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NI 86 (310)
T ss_dssp TTTCHHHHTHHHHTS--SC-CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CC
T ss_pred HhhHHHHHHHHHHhc--Cc-cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HH
Confidence 456777666633222 11 2222 2333445666666666542 11222222332222 233322 66
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 131 RTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
..|+++.+.+ +++..++..+..++...|++++|++++.+.+....-.-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777766654 455555566777777778888888877776432100124556667777777788888888888777664
Q ss_pred CCCC-----CHhhHHHHHHHH--hccC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 041936 211 SIKP-----NASSFGALVAGF--YKEE--KYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG 281 (402)
Q Consensus 211 g~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (402)
.| +..+...+..++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44 244555555442 2223 7777888888776542 443333444447777788888888777655420
Q ss_pred -----C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 282 -----M----KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 282 -----~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
. +-|..+...+|......|+ +|.+++.++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 0 1245555455555555665 677777777774
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=2.1e-09 Score=90.99 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC-HHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHS---VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTYNR 186 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 186 (402)
..+......+.+.|++++|+..|+++.+.. +.+ ...+..+..+|...|++++|+..|++.++...-.|. ...+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 333344444555555555555555554432 222 344445555555555555555555555443211111 233444
Q ss_pred HHHHHHh--------cCChhHHHHHHHHHHhC
Q 041936 187 VIKAFCE--------SSDSSSAYSILAEMDRK 210 (402)
Q Consensus 187 li~~~~~--------~~~~~~a~~~~~~~~~~ 210 (402)
+..++.. .|++++|...|+++.+.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4444444 55555555555555443
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=2.2e-09 Score=80.17 Aligned_cols=129 Identities=15% Similarity=0.201 Sum_probs=79.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++...+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 44555556666666666666666655422 2445555566666666666666666666665432 234556666666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 334 GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.|++++|..+++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777776666543 345566666667777777777777777766654
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=6e-10 Score=96.03 Aligned_cols=208 Identities=12% Similarity=0.050 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHhccCCHHH
Q 041936 160 DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIKPN-ASSFGALVAGFYKEEKYED 234 (402)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~l~~~~~~~~~~~~ 234 (402)
++++|...|++. ...|...|++++|.+.|++..+. |-+++ ..+|+.+..+|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 478888887765 34567889999999999987653 32222 5689999999999999999
Q ss_pred HHHHHHHHHHCCC---CC--ChhhHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHH
Q 041936 235 VNKVLQMMERYGM---KS--GVSMYNVRIHSLCKL-RKCAEAKALLDEMLSKGMKP-N----SVTYSHFIYGFCKDGNFE 303 (402)
Q Consensus 235 a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~ 303 (402)
|+..+++..+... .+ ...+++.+..+|... |++++|+..|++..+..... + ..++..+...+...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 9999998865321 11 145788899999996 99999999999987641110 1 356888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCH------HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHH--cC
Q 041936 304 EAKKFYRIMSNSGLSPNS------SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN------FTTMKSLVTGLA--GA 369 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~ 369 (402)
+|+..|++..+....... ..|..+..++...|++++|...+++..+.. |+ ...+..++.++. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999999986433221 156778888999999999999999988642 22 123445566664 45
Q ss_pred CChHHHHHHHHHHHhc
Q 041936 370 SKVSEAKELIGLVKEK 385 (402)
Q Consensus 370 g~~~~a~~~~~~~~~~ 385 (402)
+++++|+..|+.+...
T Consensus 254 ~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhccCCcc
Confidence 6788888888776543
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=3.1e-09 Score=79.35 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh
Q 041936 114 AHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE 193 (402)
Q Consensus 114 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 193 (402)
..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHH
Confidence 344444555555555555555554433 3344455555555555555555555555553321 2233444445555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 194 SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
.|++++|.++++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555544432 22334444444445555555555555544443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=3.8e-09 Score=89.33 Aligned_cols=188 Identities=9% Similarity=0.003 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD---LDTYNRVIKAFCESSDSSSAYSILAEMDRKSI--KPNA 216 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~~ 216 (402)
+.+...+..+...+.+.|++++|+..|+++++.. +.+ ...+..+..+|.+.|++++|...|++..+... +...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 4556777778888888999999999999887653 223 56778888888899999999999998887521 1224
Q ss_pred hhHHHHHHHHhc--------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 041936 217 SSFGALVAGFYK--------EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVT 288 (402)
Q Consensus 217 ~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 288 (402)
..+..+..++.. .|++++|...|+++.+.. +.+......+.. +..+... -...
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~ 150 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHH
Confidence 566677777777 888888888888887754 222222211100 0000000 0011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHcc----------CChHHHHHHHHHHHhC
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP--NSSVYFTMVYFMCKG----------GDYETALGFCKESIAK 350 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 350 (402)
+..+...|...|++++|+..|+++.+..... ....+..+..+|... |++++|...++++.+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 3445555666666666666666665532111 123445555555544 5666666666666654
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.15 E-value=3.7e-08 Score=84.45 Aligned_cols=168 Identities=13% Similarity=0.123 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------
Q 041936 230 EKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA--EAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN------ 301 (402)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------ 301 (402)
+++++++++++.+.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 34455555555555443 344444444444444445444 555555555554333 44455444444444443
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChHHHHHH
Q 041936 302 FEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDY-ETALGFCKESIAKG--WVPNFTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
++++++.+++++..... |...|+.+...+.+.|+. +.+..+..++.+.+ -+.++..+..+..+|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 66666666666665332 566666666666666653 33444555544322 134666777777777777788888888
Q ss_pred HHHHHhc-CCCChhhHHHHHhcC
Q 041936 379 IGLVKEK-FTKNVDTWNEIEAGL 400 (402)
Q Consensus 379 ~~~~~~~-~~~~~~~~~~l~~~~ 400 (402)
++.+.++ .|.....|+-..+.+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHhccChHHHHHHHHHHhhc
Confidence 8877763 566666666655543
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=3.1e-09 Score=86.54 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=13.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
...+...|++++|+..|++..+.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~ 33 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL 33 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 33455566666666666665544
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=1.2e-09 Score=105.42 Aligned_cols=173 Identities=12% Similarity=-0.060 Sum_probs=137.7
Q ss_pred HhcCCHHHHHHHHHHhH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH
Q 041936 121 GQANMTEHAVRTFKEMD--------EHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC 192 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 192 (402)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|++..+.. +.+...|..+...+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 67899999999999887 443 5567788888889999999999999999887653 446778888889999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKA 272 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 272 (402)
..|++++|.+.|++..+.. +-+...+..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988764 3356788888899999999999 99999888765 4567788888999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 041936 273 LLDEMLSKGMKPN-SVTYSHFIYGFCKDGN 301 (402)
Q Consensus 273 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 301 (402)
.|++..+. .|+ ...+..+..++...++
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99988765 444 5567777777766554
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.11 E-value=2.6e-09 Score=84.54 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH-H
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA-F 191 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~ 191 (402)
+......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+. .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4455566777788888888887776654 556677777777888888888888888777544 2333322222111 1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCHHHH
Q 041936 192 CESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS-GVSMYNVRIHSLCKLRKCAEA 270 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a 270 (402)
...+...+|...+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222334566666666542 2245666666666666777777777776666554211 234566666666666666666
Q ss_pred HHHHHHHH
Q 041936 271 KALLDEML 278 (402)
Q Consensus 271 ~~~~~~~~ 278 (402)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=4.8e-09 Score=85.40 Aligned_cols=161 Identities=10% Similarity=0.032 Sum_probs=84.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHH----------------HHHHHHhcCCHHHHHHHHHHhHhCCCC
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAH----------------SIILYGQANMTEHAVRTFKEMDEHKLR 142 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (402)
......+...|++++|...|+..... .+.+...+.. +..+|.+.|++++|+..|++..+.. +
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL-NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 33444555667777777777666522 2222333333 5556666666666666666666554 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHhhHH
Q 041936 143 HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD--SSSAYSILAEMDRKSIKPNASSFG 220 (402)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~ 220 (402)
.+...+..+..++...|++++|+..|++.++.. +.+..+|..+...|...|+ .+.+...++.... ..|....+.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 556666666666666666666666666665432 3344555555555544332 2333333433321 122222233
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
....++...|++++|...|++..+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3344444555666666666665543
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.09 E-value=1.3e-09 Score=105.24 Aligned_cols=175 Identities=10% Similarity=-0.016 Sum_probs=145.9
Q ss_pred HhcCCcchHHHHHHHhhc-------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 041936 86 SEANYFNGISQYLEELKT-------RPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA 158 (402)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (402)
...|++++|.+.+++... ...+.+...+..+...+.+.|++++|++.|++..+.+ +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 778999999999999871 2345667788888999999999999999999998876 67889999999999999
Q ss_pred CCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041936 159 KDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKV 238 (402)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (402)
|++++|+..|++..+.. +-+...|..+..++.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999997653 4466788999999999999999 99999998864 44678899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCC
Q 041936 239 LQMMERYGMKSGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (402)
|++..+.+ +.+...+..+..++...++
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99988764 3345677777777766554
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.09 E-value=7.5e-09 Score=88.84 Aligned_cols=164 Identities=11% Similarity=0.030 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH-
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV- 187 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l- 187 (402)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++++... .|+.......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 33444455555556666666666666655544 445555556666666666666666666655433 2333222211
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHccCC
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-SGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~ 266 (402)
...+...++.++|.+.+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 122444455555555555555442 234455555555555666666666666555554311 113445555555555555
Q ss_pred HHHHHHHHHHH
Q 041936 267 CAEAKALLDEM 277 (402)
Q Consensus 267 ~~~a~~~~~~~ 277 (402)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 55555555543
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.09 E-value=2.7e-08 Score=81.17 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=95.0
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC----CHHHHHHH
Q 041936 163 EVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE----KYEDVNKV 238 (402)
Q Consensus 163 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 238 (402)
+|.++|++..+. -+...+..+...|...+++++|.++|++..+.| +...+..+...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 345555555332 355556666666666666666666666666654 44555555555555 4 56666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 041936 239 LQMMERYGMKSGVSMYNVRIHSLCK----LRKCAEAKALLDEMLSKGMK-PNSVTYSHFIYGFCK----DGNFEEAKKFY 309 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~~~~~~a~~~~ 309 (402)
|++..+.| +...+..+...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66665543 34445555555554 55666666666666554321 014455555555555 55566666666
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHcc-C-----ChHHHHHHHHHHHhCC
Q 041936 310 RIMSNSGLSPNSSVYFTMVYFMCKG-G-----DYETALGFCKESIAKG 351 (402)
Q Consensus 310 ~~m~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 351 (402)
++..+.+ .+...+..|...|... | +.++|..++++..+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6665541 1223444444444332 2 5566666666555544
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.07 E-value=4.4e-09 Score=99.62 Aligned_cols=164 Identities=11% Similarity=0.001 Sum_probs=117.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 041936 194 SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKAL 273 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 273 (402)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887763 3457788889999999999999999999998865 45677888889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc---CChHHHHHHHHHHHhC
Q 041936 274 LDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKG---GDYETALGFCKESIAK 350 (402)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 350 (402)
+++..+.... +...+..+..+|...|++++|.+.+++..+... .+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998876322 567888899999999999999999999887632 2567788888888888 9999999999998886
Q ss_pred CCCCCHHHHHHH
Q 041936 351 GWVPNFTTMKSL 362 (402)
Q Consensus 351 ~~~~~~~~~~~l 362 (402)
+ +.+...+..+
T Consensus 158 ~-p~~~~~~~~l 168 (568)
T 2vsy_A 158 G-VGAVEPFAFL 168 (568)
T ss_dssp T-CCCSCHHHHT
T ss_pred C-CcccChHHHh
Confidence 5 3334444433
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=2.3e-07 Score=79.52 Aligned_cols=230 Identities=10% Similarity=-0.051 Sum_probs=131.7
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH----Hhc---CCh
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK--DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF----CES---SDS 197 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~---~~~ 197 (402)
++|+++++.++..+ +-+..+|+.--.++...| ++++++..++.+.... +-+..+|+.--..+ ... +++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 45666666665554 445555555555555555 6666666666665432 22233333322222 223 556
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH--HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC------HHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE--DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK------CAE 269 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~ 269 (402)
++++++++.+.+.. +-+..+|+.-..++.+.|.++ ++++.++++.+.. +.+...|+.-...+.+.+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 66666666666653 335556665555555666666 6667777666655 4555666655555555555 677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 270 AKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE-AKKFYRIMSNSG--LSPNSSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 270 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
+++.+++++...+. |...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 77777777765433 56667666666666665333 444555554432 122556677777777777788888888877
Q ss_pred HHhCCCCCCHHHHHHH
Q 041936 347 SIAKGWVPNFTTMKSL 362 (402)
Q Consensus 347 ~~~~~~~~~~~~~~~l 362 (402)
+.+.--+.....|+..
T Consensus 284 l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHTTCGGGHHHHHHH
T ss_pred HHhccChHHHHHHHHH
Confidence 7753114444444433
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=4.8e-08 Score=79.72 Aligned_cols=177 Identities=12% Similarity=0.003 Sum_probs=111.7
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 041936 128 HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS----DSSSAYSI 203 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~ 203 (402)
+|++.|++..+. -+...+..+...|...+++++|+.+|++..+. -+...+..|...|.. + ++++|.++
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 355566666553 34556666666666677777777777766432 245556666666665 5 67777777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHc----cCCHHHHHHHH
Q 041936 204 LAEMDRKSIKPNASSFGALVAGFYK----EEKYEDVNKVLQMMERYGMK-SGVSMYNVRIHSLCK----LRKCAEAKALL 274 (402)
Q Consensus 204 ~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~ 274 (402)
|++..+.| +...+..+...|.. .+++++|.+.|++..+.+.. .....+..|..+|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77776654 45566666666665 66777777777777765511 015566666666666 66777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 041936 275 DEMLSKGMKPNSVTYSHFIYGFCKD-G-----NFEEAKKFYRIMSNSGL 317 (402)
Q Consensus 275 ~~~~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~m~~~~~ 317 (402)
++..+. ..+...+..+...|... | ++++|..+|+...+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777765 12334555566666542 2 67777777777776653
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=8.4e-09 Score=97.67 Aligned_cols=153 Identities=7% Similarity=-0.161 Sum_probs=75.0
Q ss_pred CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 041936 89 NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVF 168 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 168 (402)
|++++|.+.+++... ..+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+..+|...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR-HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455555555555542 233344555555555666666666666666655543 344555555566666666666666666
Q ss_pred HHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc---CCHHHHHHHHHHHHHC
Q 041936 169 IEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKE---EKYEDVNKVLQMMERY 245 (402)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 245 (402)
++..+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5554432 2234555555566666666666666666555542 22344555555555555 6666666666655554
Q ss_pred C
Q 041936 246 G 246 (402)
Q Consensus 246 ~ 246 (402)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=1.7e-09 Score=83.13 Aligned_cols=143 Identities=8% Similarity=-0.023 Sum_probs=70.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 041936 224 AGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFE 303 (402)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 303 (402)
..+...|++++|++.++...... +.+...+..+...|.+.|++++|.+.|++..+.... +..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 33444455555555555544322 112333444555555555566665555555554221 3455555555555566666
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGF-CKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
+|+..|++..+.... +...+..+...|.+.|+++++.+. ++++.+.. +-++.+|......+...|
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666666555553211 344555555555555555544333 35554432 334444544444444444
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=8.2e-08 Score=79.11 Aligned_cols=61 Identities=8% Similarity=0.007 Sum_probs=44.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPN--SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
.+...|.+.|++++|...|+++.+...... ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 455677788888888888888877622211 2457777888888888888888888877764
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=4.6e-08 Score=80.66 Aligned_cols=204 Identities=11% Similarity=-0.075 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH-HHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLR-H-SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL-DTYNRV 187 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 187 (402)
..+..+...+.+.|++++|+..|+++.+.... + ....+..+..+|.+.|++++|+..|+++++...-.+.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34445566677788888888888887764311 1 13566677778888888888888888876653222211 133344
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCC
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGV-SMYNVRIHSLCKLRK 266 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~ 266 (402)
..++...+.. .+ ..|..+...+...|++++|...|+++.+.. |+. ..+......
T Consensus 85 g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l------ 139 (225)
T 2yhc_A 85 GLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL------ 139 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH------
T ss_pred HHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH------
Confidence 4444332210 11 112223334455678888888888888754 332 222221110
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHccCChHHHHHHH
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP--NSSVYFTMVYFMCKGGDYETALGFC 344 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 344 (402)
..+...+. .....+...|.+.|++++|...|+++++..... ....+..+..+|.+.|+.++|.+.+
T Consensus 140 ----~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 140 ----VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp ----HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 00111111 112346778889999999999999999853221 1256788899999999999999999
Q ss_pred HHHHhCC
Q 041936 345 KESIAKG 351 (402)
Q Consensus 345 ~~~~~~~ 351 (402)
+.+...+
T Consensus 208 ~~l~~~~ 214 (225)
T 2yhc_A 208 KIIAANS 214 (225)
T ss_dssp HHHHHCC
T ss_pred HHHHhhC
Confidence 9988864
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=9.1e-09 Score=81.32 Aligned_cols=161 Identities=12% Similarity=0.018 Sum_probs=93.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-H
Q 041936 148 FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAG-F 226 (402)
Q Consensus 148 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~ 226 (402)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 4445566777788888888887775542 3455667777777778888888888777766542 233332222111 1
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFCKDGNFEEA 305 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 305 (402)
...++..+|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12122233555666655543 3345556666666666666666666666666553322 234555566666666666666
Q ss_pred HHHHHHHH
Q 041936 306 KKFYRIMS 313 (402)
Q Consensus 306 ~~~~~~m~ 313 (402)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=2.5e-09 Score=82.10 Aligned_cols=139 Identities=8% Similarity=-0.017 Sum_probs=76.9
Q ss_pred hcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 041936 87 EANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKR 166 (402)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 166 (402)
..|++++|+..++.... ..+.....+..+...|.+.|++++|++.|++..+.+ +-+..+|..+..+|...|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~-~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP-SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSC-SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcc-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 34556666666665542 222233344455666666666666666666666554 4556666666666666666666666
Q ss_pred HHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 167 VFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSI-LAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 167 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
.|++.++.. +-+...|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 87 ~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666665432 22455566666666666666554443 35555432 224445555555444444
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=1.9e-08 Score=86.30 Aligned_cols=167 Identities=11% Similarity=0.052 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH-
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFG- 220 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~- 220 (402)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++... .|+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 4445556666667777777777777777775542 334566677777777777777777777766554 23333222
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFCKD 299 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 299 (402)
.....+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+..... +...+..++..+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22223455566666666676666654 4456666666777777777777777777776653221 244566666666667
Q ss_pred CCHHHHHHHHHHHH
Q 041936 300 GNFEEAKKFYRIMS 313 (402)
Q Consensus 300 ~~~~~a~~~~~~m~ 313 (402)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 77666666665543
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=3.1e-06 Score=78.19 Aligned_cols=324 Identities=9% Similarity=-0.053 Sum_probs=183.2
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHhhc-CC-CCCchHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEAN-YFNGISQYLEELKT-RP-DLQNERFHAH 115 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~-~~-~~~~~~~~~~ 115 (402)
+..+..++..+-. ++.+.+.++|+..... .|+...|..-+....+.+ ..+....+|+.... .| .+.+..+|..
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 4445556666654 7899999999988764 368889999988888776 34667788887773 22 4557788877
Q ss_pred HHHHHH----hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH----------------------------------
Q 041936 116 SIILYG----QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI---------------------------------- 157 (402)
Q Consensus 116 li~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------- 157 (402)
.+..+. ..++.+.+..+|+.........-...|......-..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 776544 346788899999998874211111222211111000
Q ss_pred ------------cCC---------HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 041936 158 ------------AKD---------YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNA 216 (402)
Q Consensus 158 ------------~~~---------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 216 (402)
.++ .+.+..+|++++... +.+...|...+.-+...|+++.|.++|++.... +.+.
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 010 122334444443321 333444555555555666666666666666655 2222
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCC---------C---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYG---------M---KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
..+.. |....+.++. ++.+.+.- . ......|...+....+.++.+.|..+|++. .. ...
T Consensus 247 ~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~ 317 (493)
T 2uy1_A 247 FLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGV 317 (493)
T ss_dssp HHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCC
T ss_pred HHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCC
Confidence 22211 1111111111 11111100 0 001234555555555667788888888888 22 122
Q ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041936 285 NSVTYSHFIYGFCK-DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLV 363 (402)
Q Consensus 285 ~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (402)
+...|......-.. .++.+.|..+|+...+... -+...+...+....+.|+.+.|..+|+.+. .....|...+
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~ 391 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI 391 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 34444432222222 2368888888888877521 124445556666677888888888888762 2467777777
Q ss_pred HHHHcCCChHHHHHHHHHHHhc
Q 041936 364 TGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
..-...|+.+.+..++++..+.
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 7777788888888888877653
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=5.4e-08 Score=84.40 Aligned_cols=227 Identities=11% Similarity=0.025 Sum_probs=139.6
Q ss_pred cCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 041936 88 ANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRV 167 (402)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 167 (402)
.|++++|.+++++..+.... . + +...+++++|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~--~-------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S--F-------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C--S-------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c--c-------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 46777888888776622110 0 0 11146677777776654 4467778888888888
Q ss_pred HHHchhhc---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhccCCHHHHHHH
Q 041936 168 FIEFPKTY---GIKP-DLDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIKP-NASSFGALVAGFYKEEKYEDVNKV 238 (402)
Q Consensus 168 ~~~~~~~~---~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 238 (402)
|.+..+.. +-.+ -..+|+.+...|...|++++|...|++..+. |-.. -..++..+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 87764321 1111 1346777888888888888888888876543 2111 13467777778877 888888888
Q ss_pred HHHHHHCCCC---C--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 041936 239 LQMMERYGMK---S--GVSMYNVRIHSLCKLRKCAEAKALLDEMLSK----GMKPN-SVTYSHFIYGFCKDGNFEEAKKF 308 (402)
Q Consensus 239 ~~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 308 (402)
|++..+.... + ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8877653210 1 1356777788888888888888888877653 11111 12555666677777888888888
Q ss_pred HHHHHhCCCC-CC---HHhHHHHHHHHHccCChHHHHH
Q 041936 309 YRIMSNSGLS-PN---SSVYFTMVYFMCKGGDYETALG 342 (402)
Q Consensus 309 ~~~m~~~~~~-~~---~~~~~~l~~~~~~~g~~~~a~~ 342 (402)
|++.. .... ++ ......++.++ ..|+.+.+..
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88877 3211 11 12233444444 4566655555
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=2e-07 Score=80.18 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=42.0
Q ss_pred HHHHHHcCCHHHHHHHHHHchhhcCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HhhHHHH
Q 041936 152 LLALTIAKDYKEVKRVFIEFPKTYGIKPDLD----TYNRVIKAFCESSDSSSAYSILAEMDRKSIK-PN----ASSFGAL 222 (402)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 222 (402)
+..+...|++++|..++++..+.....|+.. .+..+...+...+++++|...+++..+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445555666666666655543222222211 1223344444445555555555555542111 11 1134555
Q ss_pred HHHHhccCCHHHHHHHHHHHH
Q 041936 223 VAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~ 243 (402)
..+|...|++++|...|+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555444
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=3.7e-08 Score=85.42 Aligned_cols=228 Identities=10% Similarity=0.041 Sum_probs=159.5
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
..|++++|.+++++..+.. +.. + +...+++++|...|++. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 3577888888888776532 111 0 11147788888777654 44677889999999
Q ss_pred HHHHHHHhC----CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC---CC--ChhhHHHHHHHHHccCCHHHHH
Q 041936 202 SILAEMDRK----SIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMERYGM---KS--GVSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 202 ~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~ 271 (402)
..|.+..+. |-.. -..+|+.+..+|...|++++|...|++..+... .+ ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887653 2111 145788899999999999999999998765310 12 24567888888988 9999999
Q ss_pred HHHHHHHHCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHhHHHHHHHHHccCChHHHH
Q 041936 272 ALLDEMLSKGMK---P--NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPN-SSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 272 ~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~ 341 (402)
..|++..+.... + ...++..+...|...|++++|+..|++..+. +..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988753111 1 1457888999999999999999999998763 22111 235667777888889999999
Q ss_pred HHHHHHHhCCC--CCC--HHHHHHHHHHHHcCCChHHHHHH
Q 041936 342 GFCKESIAKGW--VPN--FTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 342 ~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
..+++.. ... ... ......++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999998 421 111 12344555555 56787766664
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=6.6e-08 Score=71.59 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 366 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (402)
..+......|.+.|++++|++.|++.++... .+...|..+..+|.+.|++++|...+++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 4566777888888888888888888877532 256777888888888888888888888888765 55677888888888
Q ss_pred HcCCChHHHHHHHHHHHhcCCCChhhHHHHHhc
Q 041936 367 AGASKVSEAKELIGLVKEKFTKNVDTWNEIEAG 399 (402)
Q Consensus 367 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 399 (402)
...|++++|.+.|++..+..|.+...+..|-.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888878887777766554
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=1.1e-06 Score=75.38 Aligned_cols=162 Identities=9% Similarity=0.021 Sum_probs=94.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 041936 223 VAGFYKEEKYEDVNKVLQMMERYGM-KSG----VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK-PN----SVTYSHF 292 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l 292 (402)
+..+...|++++|.+++++..+... .++ ...+..+...+...+++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455666666666666666655321 111 112233455555666777777777776653222 12 2246667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNS-----GLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAK----GWVPN-FTTMKS 361 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 361 (402)
...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777766631 11111 235666777777777777777777766542 21111 456677
Q ss_pred HHHHHHcCCC-hHHHHHHHHHHHh
Q 041936 362 LVTGLAGASK-VSEAKELIGLVKE 384 (402)
Q Consensus 362 l~~~~~~~g~-~~~a~~~~~~~~~ 384 (402)
+..++.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777777774 5777777776654
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.88 E-value=3.1e-07 Score=74.72 Aligned_cols=122 Identities=15% Similarity=0.051 Sum_probs=54.8
Q ss_pred HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 041936 152 LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK 231 (402)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 231 (402)
...+...|++++|...|++.. .|+...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|+
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 334444444444444444432 2234444444444444444444444444444332 2233344444444444444
Q ss_pred HHHHHHHHHHHHHCCCCC----------------ChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 232 YEDVNKVLQMMERYGMKS----------------GVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~----------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
+++|.+.|++..+.. +. ....+..+..++.+.|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 444444444444322 11 1134455555555555555555555555544
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=2.7e-07 Score=75.02 Aligned_cols=130 Identities=11% Similarity=0.024 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 041936 182 DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSL 261 (402)
Q Consensus 182 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (402)
..+..+...+...|++++|...|++.. .|+...+..+..++...|++++|.+.|++..+.. +.+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345567778888999999999998773 5678899999999999999999999999988765 55677888899999
Q ss_pred HccCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041936 262 CKLRKCAEAKALLDEMLSKGMK--------------P-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
...|++++|...|++..+.... | ....+..+..+|...|++++|...|+...+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999885322 1 12677888889999999999999999988754
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=1.4e-06 Score=75.49 Aligned_cols=254 Identities=10% Similarity=0.004 Sum_probs=129.8
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc-C-Ch
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK-DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES-S-DS 197 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~-~~ 197 (402)
.+.+..++|+++++.+...+ +-+..+|+.--.++...| .+++++.+++.+.+.. +-+..+|+--...+... + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCCh
Confidence 33444567888888777766 566677777766676677 4777777777776542 44555566555555554 5 66
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH--------HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC---
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE--------DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK--- 266 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--- 266 (402)
++++++++++.+.. +-|..+|+.-..++.+.|.++ ++++.++++.+.. +-+...|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 77777777777653 335556655554444444444 5555555555544 3455555555555555443
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 041936 267 ----CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE--AKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETA 340 (402)
Q Consensus 267 ----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~--a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 340 (402)
++++++.++++...... |...|+-+-..+.+.|.... -..++ ...|...+. .....
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~~--------------~~~~~ 281 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLNP--------------DIETV 281 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC------------------------
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccc---ccccccccc--------------cchhH
Confidence 34455555554443222 34444433333333332200 00000 000000000 01112
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCCChhhHHHHH
Q 041936 341 LGFCKESIAKG-----WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK-FTKNVDTWNEIE 397 (402)
Q Consensus 341 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~ 397 (402)
..+..++...+ -.+++..+..++..|.+.|+.++|.++++.+.++ .|....-|+-..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 22222222111 1356667777777777777777788887777654 344444554433
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.83 E-value=3.9e-06 Score=72.79 Aligned_cols=184 Identities=14% Similarity=-0.018 Sum_probs=139.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 78 FSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN-MTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
++.+-......+..++|+++++.+.. -.+.....++.--.++...| .+++++..++.+...+ +-+..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~-~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVR-MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH-hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33333344445566789999999983 34556666666666677788 5999999999999887 788899998888888
Q ss_pred Hc-C-CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 041936 157 IA-K-DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS--------SAYSILAEMDRKSIKPNASSFGALVAGF 226 (402)
Q Consensus 157 ~~-~-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (402)
.. + ++++++.+++.+.+.. +-+..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 77 7 8899999999997543 456677776655555555666 8999999999875 44788899888888
Q ss_pred hccCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 041936 227 YKEEK-------YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 227 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (402)
.+.++ ++++++.+++..... +-|...|+-+-..+.+.|+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 88876 688888888888765 56778888777666666553
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=5.2e-07 Score=77.55 Aligned_cols=163 Identities=9% Similarity=0.008 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHchhhcC--CCCC--HHHH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSV------GAFNALLLALTIAKDYKEVKRVFIEFPKTYG--IKPD--LDTY 184 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~~~~ 184 (402)
..+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|+..+++..+... ..+. ..+|
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444455555555555555554443211 11 1223344445555566666665555432110 0111 2355
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh---C-CCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCC-Chhh
Q 041936 185 NRVIKAFCESSDSSSAYSILAEMDR---K-SIKP--NASSFGALVAGFYKEEKYEDVNKVLQMMERYG----MKS-GVSM 253 (402)
Q Consensus 185 ~~li~~~~~~~~~~~a~~~~~~~~~---~-g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~ 253 (402)
+.+...|...|++++|...|++..+ . +..+ ...++..+..+|...|++++|...+++..+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5555666666666666666655541 1 1011 11355555666666666666666665544321 000 1345
Q ss_pred HHHHHHHHHccCCHHHH-HHHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEA-KALLDEML 278 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a-~~~~~~~~ 278 (402)
|..+..+|.+.|++++| ...+++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55566666666666666 55455443
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=1.5e-06 Score=74.57 Aligned_cols=166 Identities=11% Similarity=0.021 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC---CCC--hh
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN-----ASSFGALVAGFYKEEKYEDVNKVLQMMERYGM---KSG--VS 252 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 252 (402)
.+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455566667777777777766665422111 01233344555666777777777776654321 111 33
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CH
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLS---K-GMKP--NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSP-NS 321 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 321 (402)
+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|...+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 666777777777777777777777652 1 1111 1146667777777777777777777766542 1111 14
Q ss_pred HhHHHHHHHHHccCChHHH-HHHHHHHH
Q 041936 322 SVYFTMVYFMCKGGDYETA-LGFCKESI 348 (402)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 348 (402)
.+|..+...|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5667777777777777777 66666554
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=2.3e-07 Score=68.65 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
.+......|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHH
Confidence 34444445555555555555555555443 4445555555555555555555555555554331 22344455555555
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 041936 192 CESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~ 210 (402)
...|++++|.+.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5555555555555555543
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.77 E-value=3.9e-07 Score=70.64 Aligned_cols=126 Identities=11% Similarity=-0.033 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC 192 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 192 (402)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 4445555666666666666666665543 4455566666666666666666666666654432 334455555666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHH--HHHHHHhccCCHHHHHHHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFG--ALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
..|++++|...|++..+.. +.+...+. ..+..+...|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666655542 11233332 2222244555555555555543
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=2.5e-07 Score=71.80 Aligned_cols=130 Identities=8% Similarity=0.038 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 46777888889999999999999998743 44567788888999999999999999999998875 66788999999999
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHHh
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR--VIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~--li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
...|++++|...|++..+.. +.+...+.. ....+...|++++|.+.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999987653 334444533 44447788999999999886643
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=5e-07 Score=69.01 Aligned_cols=100 Identities=9% Similarity=-0.080 Sum_probs=66.7
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 108 QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
.+...+..+...+.+.|++++|+..|++..+.+ |.+...|..+..+|...|++++|+..|++..+.. +.+...|..+
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~l 110 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHH
Confidence 344555566666777777777777777776655 5566677777777777777777777777765442 3345566667
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 041936 188 IKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
..+|...|++++|...|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777776664
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=5.7e-07 Score=65.76 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
.+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHH
Confidence 34444445555555555555555554433 3344445555555555555555555555543321 22344444555555
Q ss_pred HhcCChhHHHHHHHHHHh
Q 041936 192 CESSDSSSAYSILAEMDR 209 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~ 209 (402)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555444
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=5.8e-07 Score=66.71 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..+...+...|++++|.+.+++.... .+.+...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3445555555666666666666666665522 33344555555555666666666666666655543 344555555566
Q ss_pred HHHHcCCHHHHHHHHHHchh
Q 041936 154 ALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~ 173 (402)
++...|++++|...|++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666655543
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=2.1e-07 Score=79.42 Aligned_cols=193 Identities=6% Similarity=-0.079 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4455566667777888888888888777654 4567777777778888888888888887775431 335567777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKPNA-SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
++...|++++|...|++..+.. |+. ..+...+....+. .++ ..+........+.+......+.. + ..|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 7888888888888887766532 111 1111111111111 111 11122222333444444333322 2 257778
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 041936 269 EAKALLDEMLSKGMKPNSV-TYSHFIYGFCKD-GNFEEAKKFYRIMSNS 315 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~~~~a~~~~~~m~~~ 315 (402)
+|.+.++...+. .|+.. ....+...+.+. +.+++|.++|....+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888887777655 44433 333333334443 5677788888776653
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=6.5e-08 Score=82.68 Aligned_cols=97 Identities=10% Similarity=-0.009 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 041936 145 VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVA 224 (402)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 224 (402)
...+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444555555555555555555555554331 2244445555555555555555555555555432 223444455555
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 041936 225 GFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~ 244 (402)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554443
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.71 E-value=1.8e-07 Score=75.31 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=52.6
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh---cCCC-CCHHHHHHHHHHHHhcCCh
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT---YGIK-PDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-p~~~~~~~li~~~~~~~~~ 197 (402)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+. .+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123444555555555555555555555554321 0111 1123344455555555555
Q ss_pred hHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041936 198 SSAYSILAEMDRK----SIKP--NASSFGALVAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 198 ~~a~~~~~~~~~~----g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (402)
++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555555544332 1011 12234444555555555555555555443
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.71 E-value=5.3e-07 Score=66.92 Aligned_cols=118 Identities=8% Similarity=-0.020 Sum_probs=70.3
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHH
Q 041936 107 LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR 186 (402)
Q Consensus 107 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 186 (402)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHH
Confidence 3344555666666677777777777777766554 4456666666666767777777777776665432 334556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 041936 187 VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK 228 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (402)
+...+...|++++|.+.|++..+.. +.+...+..+..++..
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 6666666666666666666665542 1233344444444433
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.70 E-value=2.3e-07 Score=73.07 Aligned_cols=119 Identities=8% Similarity=0.123 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH-HHhcCCh--hH
Q 041936 123 ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA-FCESSDS--SS 199 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~--~~ 199 (402)
.|++++|+..++...+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 344444444444444333 3344444445555555555555555555443321 2233344444444 4444544 55
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 200 AYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 200 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
|...++++.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 555555544432 223344444445555555555555555554443
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=1.7e-07 Score=75.49 Aligned_cols=156 Identities=9% Similarity=-0.054 Sum_probs=76.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHccCCH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY----GM-KSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~ 267 (402)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444331 1223455666666666666666666666655441 11 11234455555556666666
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHccCC
Q 041936 268 AEAKALLDEMLSK----GMKP--NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSP-NSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 268 ~~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~ 336 (402)
++|...+++..+. +..| ....+..+...+...|++++|...+++.... +... -..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666655432 1111 1223455555555566666666665555422 1000 01223444555555555
Q ss_pred hHHHHHHHHHHHh
Q 041936 337 YETALGFCKESIA 349 (402)
Q Consensus 337 ~~~a~~~~~~~~~ 349 (402)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=4.7e-07 Score=66.85 Aligned_cols=116 Identities=12% Similarity=-0.071 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHH
Confidence 334444445555555555555555554433 3344455555555555555555555555554321 2234444455555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
+...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555555544432 123334444444444333
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=5.3e-07 Score=75.63 Aligned_cols=136 Identities=7% Similarity=-0.086 Sum_probs=68.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHcc
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN--SSVYFTMVYFMCKG 334 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~ 334 (402)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4445555566666666665555432 322233334445556666666666665333321 110 12445555566666
Q ss_pred CChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 335 GDYETALGFCKESIAKGWVPN--FTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++....|. ...+..|
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 666666666666553221132 223444455556666666666666666665444 4444443
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.68 E-value=6.2e-07 Score=68.48 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
.+..+...+.+.|++++|...|++...... -+...|..+..+|...|++++|...|+++.+.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 455555566666666666666666665422 135555666666666666666666666666553 334555666666666
Q ss_pred cCCChHHHHHHHHHHHhc
Q 041936 368 GASKVSEAKELIGLVKEK 385 (402)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~ 385 (402)
+.|++++|.+.|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666654
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=6e-07 Score=65.62 Aligned_cols=96 Identities=17% Similarity=0.314 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++++.+... .+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 334444444455555555555555544431 11333444444444444555555554444444311 1233444444444
Q ss_pred HccCChHHHHHHHHHHHh
Q 041936 332 CKGGDYETALGFCKESIA 349 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~ 349 (402)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444444444444444443
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=2.9e-07 Score=72.55 Aligned_cols=121 Identities=9% Similarity=0.007 Sum_probs=86.2
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH-HHHcCCH--H
Q 041936 86 SEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA-LTIAKDY--K 162 (402)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 162 (402)
...|++++|...++..... .+.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4467777888777776632 34556677777788888888888888888877655 5567777777777 6677887 8
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 163 EVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 163 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
+|...+++..+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888876542 334667777888888888888888888888775
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.66 E-value=1.7e-07 Score=71.59 Aligned_cols=99 Identities=8% Similarity=-0.022 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 250 GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
+...+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++...... .+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 3444555556666666666666666666654222 455566666666666666666666666665421 13455556666
Q ss_pred HHHccCChHHHHHHHHHHHhC
Q 041936 330 FMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666553
No 143
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=1.1e-05 Score=74.52 Aligned_cols=198 Identities=6% Similarity=-0.026 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHHhHhC-CC-CCCHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM-TEHAVRTFKEMDEH-KL-RHSVGAFNALL 152 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~ 152 (402)
..|...+..+-. |+++.+..+|+..... .|+..+|...+....+.+. .+....+|+..... |. +.+...|...+
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 344444444433 8899999999998853 4588899888887777763 45677788877653 42 45778888888
Q ss_pred HHHH----HcCCHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHHh-------------cCChhHHHHHHHHHHhCCCC
Q 041936 153 LALT----IAKDYKEVKRVFIEFPKTYGIKPD--LDTYNRVIKAFCE-------------SSDSSSAYSILAEMDRKSIK 213 (402)
Q Consensus 153 ~~~~----~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~-------------~~~~~~a~~~~~~~~~~g~~ 213 (402)
..+. ..++.+.+..+|+..+. +++. ...|......-.. .+.+..|..+++++...--.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~---~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQ---TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHT---SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHh---ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 7654 34678889999999874 2322 1223332221111 11223344445444321000
Q ss_pred CCHhhHHHHHHHHhccC--C-----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 214 PNASSFGALVAGFYKEE--K-----YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
.+...|...+.--...+ - .+.+..+|+++.... +.+...|...+..+.+.|++++|..+|++....
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 13335555554432221 1 345778899888754 556788888899999999999999999999987
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=1.2e-06 Score=73.47 Aligned_cols=51 Identities=6% Similarity=-0.092 Sum_probs=20.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFI 169 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (402)
...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333444444444444444443322 211122333334444444444444444
No 145
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.9e-05 Score=71.70 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=40.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHC--CC---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--H
Q 041936 218 SFGALVAGFYKEEKYEDVNKVLQMMERY--GM---KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK----GMKPN--S 286 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~ 286 (402)
++..+...+...|++++|..+++.+... +. +....++..++..|...|++++|..++++.... +..+. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 3444455555555555555555544321 00 011234444455555555555555555544321 11111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIM 312 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m 312 (402)
..+..+...+...|++++|...|.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23333444444455555555444443
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.64 E-value=3e-07 Score=70.16 Aligned_cols=98 Identities=10% Similarity=-0.094 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
+...+..+...+.+.|++++|+..|+.....+ +.+...|..+..+|...|++++|+..|++..... +.+...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHH
Confidence 33444445555555666666666666555543 4455555555555556666666666665554332 22344455555
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 041936 189 KAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+|...|++++|.+.|++..+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555544
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=9.2e-07 Score=65.23 Aligned_cols=120 Identities=10% Similarity=0.029 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 4557788888899999999999999998743 34567788888899999999999999999988765 567888999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
++...|++++|...|++..+.. +.+...+..+...+...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999987653 34667777788887777664
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=8.6e-07 Score=65.35 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
.+..+...+...|++++|...|++..+... .+...|..+..+|...|++++|...+++.++.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 344455555555555555555555554321 134555555555555666666666665555543 334555555555666
Q ss_pred cCCChHHHHHHHHHHHhcC
Q 041936 368 GASKVSEAKELIGLVKEKF 386 (402)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~ 386 (402)
..|++++|.+.|++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 6666666666666555543
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.59 E-value=5.5e-05 Score=65.28 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=17.6
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHch
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK--DYKEVKRVFIEFP 172 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 172 (402)
++++.+++.+...+ +-+..+|+.-..++...+ .+++++.+++.+.
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l 137 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFL 137 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence 33444444443332 333444444333333333 2344444444443
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=2e-06 Score=62.10 Aligned_cols=107 Identities=15% Similarity=0.023 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
.+..+...+...|++++|...+++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 344444555555555555555555544321 134445555555555555555555555555443 334455555555555
Q ss_pred cCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 368 GASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
..|++++|.+.+++..+..|.+...+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 55566666665555555544444444433
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=1.3e-06 Score=76.68 Aligned_cols=124 Identities=11% Similarity=-0.018 Sum_probs=62.2
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--------------hhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 215 NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG--------------VSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
+...+..+...+.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666677777777777777777777766531111 244444444555555555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 041936 281 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETA 340 (402)
Q Consensus 281 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 340 (402)
.. .+...|..+..+|...|++++|...|++..+... -+...+..+..++...|+.+++
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 21 1334444444444455555555555544444311 1233444444444444444444
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=8.3e-08 Score=77.32 Aligned_cols=59 Identities=15% Similarity=0.002 Sum_probs=23.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
+..+..++...|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3333333444444444444444333332 2233333334444444444444444444443
No 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=1.5e-06 Score=76.21 Aligned_cols=95 Identities=13% Similarity=0.007 Sum_probs=58.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGF 296 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 296 (402)
..|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 456666666666666666666666666654 345566666666667777777777777766665221 445666666666
Q ss_pred HhcCCHHHH-HHHHHHHH
Q 041936 297 CKDGNFEEA-KKFYRIMS 313 (402)
Q Consensus 297 ~~~~~~~~a-~~~~~~m~ 313 (402)
...|+.++| ...|..|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666 33444443
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.55 E-value=2.2e-07 Score=74.83 Aligned_cols=96 Identities=13% Similarity=-0.092 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
..|..+..+|.+.|++++|...+++..+... .+...+..+..+|...|++++|...|++..+... -+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 4555666666667777777777776665421 2455666666667777777777777776665421 1345555565566
Q ss_pred HccCChHHHH-HHHHHHHh
Q 041936 332 CKGGDYETAL-GFCKESIA 349 (402)
Q Consensus 332 ~~~g~~~~a~-~~~~~~~~ 349 (402)
...++.+++. ..+..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5555555555 34444433
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=6.3e-06 Score=59.36 Aligned_cols=96 Identities=11% Similarity=-0.074 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
.+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 34444555555666666666666655443 3445555555556666666666666665554431 22344555555555
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 041936 192 CESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~ 210 (402)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5566666666666555544
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=1.5e-06 Score=65.64 Aligned_cols=97 Identities=11% Similarity=-0.010 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
..+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++...... .+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 34444555566666666666666666654222 455566666666666666666666666665432 1344555566666
Q ss_pred HccCChHHHHHHHHHHHhC
Q 041936 332 CKGGDYETALGFCKESIAK 350 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~ 350 (402)
...|++++|...+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=3.9e-06 Score=63.47 Aligned_cols=106 Identities=13% Similarity=-0.003 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN----SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSL 362 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (402)
..+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 34444444444555555555555554442 222 3444444445555555555555555554432 2234444555
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCChhhHHH
Q 041936 363 VTGLAGASKVSEAKELIGLVKEKFTKNVDTWNE 395 (402)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 395 (402)
..++...|++++|.+.|++..+..+.+...+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 555555555555555555555544444444433
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=1.5e-06 Score=65.61 Aligned_cols=96 Identities=10% Similarity=-0.114 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..+..+...+.+.|++++|+..|+.....+ +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHH
Confidence 334444455555666666666666555544 4455555555556666666666666665554432 2234445555555
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 041936 191 FCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~ 209 (402)
+...|++++|.+.|++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555666666655555544
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=4.4e-06 Score=61.45 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC 192 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 192 (402)
+......+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++.++.. +.+...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 4444445555566666666666555543 4445555555555666666666666655554432 223445555555555
Q ss_pred hcCChhHHHHHHHHHHh
Q 041936 193 ESSDSSSAYSILAEMDR 209 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~ 209 (402)
..|++++|.+.|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.50 E-value=2e-06 Score=61.41 Aligned_cols=98 Identities=15% Similarity=0.019 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVP--NFTTMKSLVTG 365 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 365 (402)
.+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 344444555555555555555555554321 134445555555555566666666555555542 22 35555555555
Q ss_pred HHcC-CChHHHHHHHHHHHhcCC
Q 041936 366 LAGA-SKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 366 ~~~~-g~~~~a~~~~~~~~~~~~ 387 (402)
+.+. |++++|.+.++.+.+..|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 6666 666666666666555433
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=2e-06 Score=66.78 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=76.5
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 250 GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..|++.++... -+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4556777778888888888888888888876322 567778888888888888888888888887532 24677788888
Q ss_pred HHHccCChHHHHHHHHHHHhC
Q 041936 330 FMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+|...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888765
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=9.7e-06 Score=73.64 Aligned_cols=166 Identities=11% Similarity=0.019 Sum_probs=112.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCH----hhHHHHHHHHhccCCHHHHHHHHHHHHH----CCCCC-Chhh
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDRKS-IKPNA----SSFGALVAGFYKEEKYEDVNKVLQMMER----YGMKS-GVSM 253 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~ 253 (402)
+..+...|...|++++|.+.+..+...- ..++. .+.+.+...+...|+++++..+++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666777777776666554320 01111 2234444455567888888888877653 22222 2456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSK--GM--KP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPN--SS 322 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~ 322 (402)
+..+...|...|++++|..+++++... +. .+ ...++..++..|...|++++|..+++..... +..+. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 788899999999999999999988653 11 12 2457888999999999999999999887643 11111 34
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
.+..+...+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566777788889999999988877654
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.49 E-value=2.3e-06 Score=61.08 Aligned_cols=97 Identities=11% Similarity=-0.027 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC--CHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP--DLDTYNRVI 188 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li 188 (402)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHH
Confidence 344445555566666666666666655543 3445555556666666666666666666554331 22 345555555
Q ss_pred HHHHhc-CChhHHHHHHHHHHhC
Q 041936 189 KAFCES-SDSSSAYSILAEMDRK 210 (402)
Q Consensus 189 ~~~~~~-~~~~~a~~~~~~~~~~ 210 (402)
..+... |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555566 6666666666555544
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.49 E-value=0.0002 Score=61.84 Aligned_cols=234 Identities=8% Similarity=-0.025 Sum_probs=152.1
Q ss_pred hcCCHH-HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 122 QANMTE-HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD----------YKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 122 ~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
+.|.++ +|+++++.+...+ +-+..+|+.--.++...+. +++++.+++.+.... +-+..+|+--.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 444443 5677777776665 4555556544333333332 578888888887653 4466677766666
Q ss_pred HHhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc---
Q 041936 191 FCESS--DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK-YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKL--- 264 (402)
Q Consensus 191 ~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 264 (402)
+...+ .+++++++++.+.+.. +-|...|+.-..++...|. ++++++.++.+.+.. +-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 66666 4788999999888875 4477777777777777777 588888888888876 56777777766655544
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHH
Q 041936 265 -----------RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKD-----------GNFEEAKKFYRIMSNSGLSPNSS 322 (402)
Q Consensus 265 -----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~ 322 (402)
+.++++++.++......+. |...|+-+-..+.+. +.++++++.++++.+. .||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-
Confidence 4577888888888876433 666666444444333 3577889999988874 4553
Q ss_pred hHHHHH-----HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041936 323 VYFTMV-----YFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTG 365 (402)
Q Consensus 323 ~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (402)
.|..+. ......|..+++..++.++++.+ +....-|.-+...
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~ 318 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHH
Confidence 233221 22224677888899999998765 4444445444433
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=2.9e-06 Score=63.36 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=61.3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 041936 249 SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMV 328 (402)
Q Consensus 249 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 328 (402)
.+...+..+...+...|++++|...|++....... +...|..+..++...|++++|...+++..+... .+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 34555666666666666777777666666654322 455666666666666666666666666665432 1355566666
Q ss_pred HHHHccCChHHHHHHHHHHHhC
Q 041936 329 YFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.++...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666666543
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=3.3e-06 Score=62.36 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2233344444444444444444444444443
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=3.2e-06 Score=65.58 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..+...+.+.|++++|.+.|++.... .+.+...+..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI-APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445666666666777777777777666632 33455666666667777777777777777766654 455666666777
Q ss_pred HHHHcCCHHHHHHHHHHchhh
Q 041936 154 ALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~ 174 (402)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777666544
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.44 E-value=6.3e-06 Score=60.84 Aligned_cols=96 Identities=14% Similarity=0.017 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcC-CCCC----HHHHHHH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG-IKPD----LDTYNRV 187 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~----~~~~~~l 187 (402)
+..+...+.+.|++++|+..|++..+.. +.+...|+.+..+|...|++++|++.+++.++... ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445555666666666666666665544 44555666666666666666666666665543210 0111 1234444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 041936 188 IKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~ 209 (402)
..++...|++++|++.|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555544
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=2.5e-06 Score=62.90 Aligned_cols=99 Identities=8% Similarity=0.028 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCC-CCC----HHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGI-KPD----LDTYN 185 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~~~ 185 (402)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+...- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344455556666666666666666666544 445566666666666666666666666665433100 111 44555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 186 RVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 186 ~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
.+...+...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5666666666666666666666553
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.44 E-value=9.7e-07 Score=64.20 Aligned_cols=88 Identities=6% Similarity=-0.099 Sum_probs=64.5
Q ss_pred hcCCcchHHHHHHHhhcCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 041936 87 EANYFNGISQYLEELKTRP--DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
..|++++|+..|++....+ .+.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888887543 34556677778888888888888888888887765 56677888888888888888888
Q ss_pred HHHHHHchhhc
Q 041936 165 KRVFIEFPKTY 175 (402)
Q Consensus 165 ~~~~~~~~~~~ 175 (402)
+..+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888876653
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.43 E-value=8e-06 Score=60.89 Aligned_cols=96 Identities=5% Similarity=-0.169 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
...+..+...+...|++++|+..|+...+.. +.+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHH
Confidence 3344444444455555555555555444433 3334444444445555555555555554443321 223344444444
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 041936 190 AFCESSDSSSAYSILAEMD 208 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~ 208 (402)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444443
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.9e-05 Score=59.60 Aligned_cols=94 Identities=9% Similarity=-0.098 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHS----VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
.+..+...+...|++++|.+.|++..+.. |+ ...+..+..+|...|++++|...+++..+.. +.+...+..+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHHH
Confidence 33334444444444444444444444332 22 3334444444444444444444444443321 1223334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 041936 188 IKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~ 209 (402)
..++...|++++|.+.|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=1.5e-05 Score=58.58 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=49.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHH
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNS---VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN--SSVYFTMVYF 330 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~ 330 (402)
.+...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...|++..+...... ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3444555566666666666665554211 11 3445555556666666666666666555321100 3344555555
Q ss_pred HHccCChHHHHHHHHHHHhC
Q 041936 331 MCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~ 350 (402)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55566666666666555553
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.35 E-value=3.8e-06 Score=61.83 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC--CCC----HHHH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKL--RHS----VGAF 148 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 148 (402)
...+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...++...+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 346777888899999999999999998843 345677888888999999999999999999876531 122 7788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..+..++...|++++|...|++..+. .|+......+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 88999999999999999999998764 4566555554443
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=7.5e-06 Score=59.84 Aligned_cols=93 Identities=9% Similarity=-0.023 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
.+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 34445566666666666666666554 4456666666666666666666666666665432 22445556666666666
Q ss_pred CChhHHHHHHHHHHhC
Q 041936 195 SDSSSAYSILAEMDRK 210 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~ 210 (402)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666543
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.32 E-value=5.2e-06 Score=60.68 Aligned_cols=93 Identities=8% Similarity=-0.031 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
.+...+.+.|++++|...|++..+... -+...|..+..++...|++++|...+++.++.. +.+...+..+..++.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344445555555555555555554321 134445555555555555555555555555543 334445555555555555
Q ss_pred ChHHHHHHHHHHHhc
Q 041936 371 KVSEAKELIGLVKEK 385 (402)
Q Consensus 371 ~~~~a~~~~~~~~~~ 385 (402)
++++|...+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555543
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.26 E-value=4.2e-06 Score=64.15 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCCHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSP-NSSVYFTMVYFMCKGGDYETALGFCKESIAK----GW-VPNFT 357 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 357 (402)
++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|...+++..+. +. .....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555555555555555554432 0000 1234455555666666666666666655432 10 11134
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455666667777777777777776655
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=7e-06 Score=62.88 Aligned_cols=131 Identities=7% Similarity=-0.107 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLR-HS----VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LD 182 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 182 (402)
.+..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555666666666666554432100 11 124555555666666666666666554322100011 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRK----SIK-PNASSFGALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
.+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444555555555555555555544322 100 01223344444444445555555444443
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.20 E-value=6.8e-05 Score=55.02 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC---HHHHHHHHHH
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSV---GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD---LDTYNRVIKA 190 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~ 190 (402)
...+...|++++|...|+...+.. +.+. ..+..+..++...|++++|...|++..+.. +.+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 334445555555555555554432 1222 344445555555555555555555554331 111 3334444555
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 041936 191 FCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~ 209 (402)
+...|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=3e-06 Score=61.53 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHH
Q 041936 264 LRKCAEAKALLDEMLSKGMK-P-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
.|++++|+..|++..+.+.. | +...+..+..+|...|++++|...|++..+.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 46666677777766654311 2 2345666666666667777777777666664322 3555666666666667777777
Q ss_pred HHHHHHHhC
Q 041936 342 GFCKESIAK 350 (402)
Q Consensus 342 ~~~~~~~~~ 350 (402)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.17 E-value=1.8e-05 Score=61.07 Aligned_cols=99 Identities=14% Similarity=0.077 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041936 251 VSMYNVRIHSLCKLRKCAEAKALLDEMLSK--------GM--------KP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 251 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 313 (402)
...+......+.+.|++++|...|++.... .. .| +...|..+..+|.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666667777778888888777776653 00 01 22455566666666666666666666666
Q ss_pred hCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 314 NSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 314 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+... .+...|..+..+|...|++++|...+++.++.
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5421 23556666666666666666666666666654
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=5.1e-06 Score=76.49 Aligned_cols=117 Identities=12% Similarity=0.001 Sum_probs=63.4
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS 199 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 199 (402)
+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 445566666666666665543 4445666666666666666666666666664431 3344556666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHH--HhccCCHHHHHHHHH
Q 041936 200 AYSILAEMDRKSIKPNASSFGALVAG--FYKEEKYEDVNKVLQ 240 (402)
Q Consensus 200 a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 240 (402)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666665542 1123334444433 555566666666665
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=4.8e-05 Score=69.67 Aligned_cols=121 Identities=11% Similarity=0.006 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHS---------------VGAFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
...+......+.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..+++.++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3445566666777777777777777766532 122 344444444555555555555555444332
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 041936 175 YGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYED 234 (402)
Q Consensus 175 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 234 (402)
. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.++
T Consensus 347 ~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 347 D--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp S--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred C--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 1 2233444444444444455555555444444432 1123344444444444444433
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=1e-05 Score=74.47 Aligned_cols=119 Identities=9% Similarity=0.055 Sum_probs=89.9
Q ss_pred HHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 041936 83 NKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYK 162 (402)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 162 (402)
..+.+.|++++|.+.+++.... .+.+...+..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3456778899999999888743 45567788888889999999999999999988876 667888888999999999999
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 041936 163 EVKRVFIEFPKTYGIKPDLDTYNRVIKA--FCESSDSSSAYSILA 205 (402)
Q Consensus 163 ~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~ 205 (402)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999887653 2233445555555 778899999999888
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=5.6e-05 Score=69.18 Aligned_cols=122 Identities=5% Similarity=-0.054 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041936 145 VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-------------LDTYNRVIKAFCESSDSSSAYSILAEMDRKS 211 (402)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 211 (402)
...|..+...+.+.|++++|+..|++.++...-.++ ...|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 456677777888888888888888877653211111 2344444444444444444444444444432
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 041936 212 IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
+.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 2233444444444444444444444444444432 222333334444444444333
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=0.00022 Score=67.00 Aligned_cols=131 Identities=13% Similarity=0.074 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC--
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK----------YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLR-- 265 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 265 (402)
++|++.++++.... +-+..+|+.--.++...|+ ++++++.++.+.+.. +.+..+|+.-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45566666665543 2234445444444444444 556666666665544 345555555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG-NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 332 (402)
+++++++.++++.+.... +...|+.-.-.+.+.| .++++++.++++++.... |...|+.....+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~ 189 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 189 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHH
Confidence 446666666666655333 4555555555555555 555556655555554332 4445544444443
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=4.8e-05 Score=67.49 Aligned_cols=97 Identities=9% Similarity=0.060 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhcC-------------C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTYG-------------I-KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSI 212 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 212 (402)
.+..+...+.+.|++++|+..|++.++... . +.+...|..+..+|.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 355566666677777777777766643100 0 1122334444444444555555555554444432
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 213 KPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
+.+...+..+..+|...|++++|.+.|++..+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 12334444444444444444444444444444
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=3.8e-05 Score=68.12 Aligned_cols=90 Identities=9% Similarity=0.023 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041936 144 SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALV 223 (402)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (402)
+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34555666666666666666666666664321 2345556666666666666666666666665542 22444555555
Q ss_pred HHHhccCCHHHHH
Q 041936 224 AGFYKEEKYEDVN 236 (402)
Q Consensus 224 ~~~~~~~~~~~a~ 236 (402)
.++...++.+++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=5.2e-05 Score=58.42 Aligned_cols=98 Identities=17% Similarity=0.046 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcC---------C--------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTR---------P--------DLQNERFHAHSIILYGQANMTEHAVRTFKEMDE 138 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~--------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 138 (402)
..+......+.+.|++++|...|+..... + .+.....+..+..+|.+.|++++|+..++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45666667777778888888777776632 0 122234555666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 139 HKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
.+ +.+...|..+..+|...|++++|...|++..+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54 455666666666666666666666666666443
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.07 E-value=0.00022 Score=66.89 Aligned_cols=133 Identities=8% Similarity=0.005 Sum_probs=81.9
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD----------SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
.++|++.++++++.. +-+...|+.--..+...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 356677777776542 2234455555455555554 677777777776654 335666666666666666
Q ss_pred --CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041936 231 --KYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLR-KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK 298 (402)
Q Consensus 231 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 298 (402)
+++++++.++++.+.. +.+..+|+.-...+.+.| .++++++.++++.+..+. +...|+.....+.+
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~ 190 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 190 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHh
Confidence 5577777777777665 456666666666666666 677777777777665433 55666655555444
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=1.6e-05 Score=69.77 Aligned_cols=151 Identities=14% Similarity=0.043 Sum_probs=81.3
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041936 216 ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG 295 (402)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 295 (402)
...+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5567778888889999999999999887653 43321 223333333332221 1367778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCChHH
Q 041936 296 FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTG-LAGASKVSE 374 (402)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 374 (402)
|.+.|++++|+..+++.++... .+...|..+..+|...|++++|...|+++.+.. +.+...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887532 256778888888888899999988888887653 2344455555444 234566777
Q ss_pred HHHHHHHHHhcCC
Q 041936 375 AKELIGLVKEKFT 387 (402)
Q Consensus 375 a~~~~~~~~~~~~ 387 (402)
+...|..+....|
T Consensus 318 a~~~~~~~l~~~p 330 (338)
T 2if4_A 318 QKEMYKGIFKGKD 330 (338)
T ss_dssp -------------
T ss_pred HHHHHHHhhCCCC
Confidence 7888888776533
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.97 E-value=3.5e-05 Score=70.66 Aligned_cols=125 Identities=7% Similarity=-0.047 Sum_probs=62.9
Q ss_pred HHhcCCHHHHHHHHHHhHhC-----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh----cCC-CC-CHHHHHH
Q 041936 120 YGQANMTEHAVRTFKEMDEH-----K--LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT----YGI-KP-DLDTYNR 186 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~p-~~~~~~~ 186 (402)
+...|++++|+.++++.++. | .+....+++.|..+|...|++++|..++++..+. .|- -| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566777776666655431 1 1112345666666666666666666666554321 111 11 2234556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC-----CC--CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 187 VIKAFCESSDSSSAYSILAEMDRK-----SI--KPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~~~~-----g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
|...|...|++++|+.++++..+. |. +....+...+..++...+.+++|+.+|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665554431 21 11122333444444555555555555555543
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.97 E-value=5.9e-05 Score=57.13 Aligned_cols=62 Identities=15% Similarity=0.027 Sum_probs=41.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAK-------GWVPNFTTM----KSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.|..+..++.+.|++++|+..+++.++. . +-+...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666666666777777777777666654 3 3344556 66677777777777777777777664
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=4.3e-05 Score=70.06 Aligned_cols=127 Identities=12% Similarity=-0.032 Sum_probs=95.1
Q ss_pred HHHhcCCcchHHHHHHHhhc-------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHh-----CC--CCCCHHHHH
Q 041936 84 KLSEANYFNGISQYLEELKT-------RPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDE-----HK--LRHSVGAFN 149 (402)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~--~~~~~~~~~ 149 (402)
.+...|++++|..++++... ...+....+++.+..+|...|++++|+.++++..+ .| .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34578999999999987761 12233457788899999999999999999988654 23 222346789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhh----cCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 150 ALLLALTIAKDYKEVKRVFIEFPKT----YGIK-P-DLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 150 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
.|...|...|++++|+.++++..+. .|-. | ...+.+.+-.++...+.+++|+.+|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887432 2221 2 2345667778888889999999999988763
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=7e-05 Score=53.84 Aligned_cols=80 Identities=13% Similarity=0.048 Sum_probs=55.4
Q ss_pred chHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 92 NGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
++|.+.++.... ..+.+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLA-QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHT-TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356666666662 344556667777777777777777777777777654 456667777777777777777777777776
Q ss_pred hh
Q 041936 172 PK 173 (402)
Q Consensus 172 ~~ 173 (402)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.95 E-value=0.00037 Score=51.97 Aligned_cols=83 Identities=7% Similarity=0.021 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----c
Q 041936 263 KLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK----G 334 (402)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~ 334 (402)
..+.+++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..|...|.. .
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCC
Confidence 3333444444444444332 23333334333433 344444444444444432 23333334444443 3
Q ss_pred CChHHHHHHHHHHHhCC
Q 041936 335 GDYETALGFCKESIAKG 351 (402)
Q Consensus 335 g~~~~a~~~~~~~~~~~ 351 (402)
++.++|..++++..+.|
T Consensus 111 ~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 44444444444444443
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.94 E-value=2.8e-05 Score=68.17 Aligned_cols=95 Identities=8% Similarity=0.044 Sum_probs=36.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 041936 218 SFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG-F 296 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~ 296 (402)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 45555566666666666666666665543 334555666666666666666666666665543211 22333333333 1
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 041936 297 CKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~ 314 (402)
...+..+.+..+|..|..
T Consensus 310 ~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 233445555566666554
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.92 E-value=0.00039 Score=51.89 Aligned_cols=110 Identities=10% Similarity=-0.015 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh----cCChhHH
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE----SSDSSSA 200 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a 200 (402)
++++|++.|++..+.| .+... |...|...+..++|.++|++..+. -+...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4455555555555544 23222 444444444555555555554332 234444555555544 4555555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCC
Q 041936 201 YSILAEMDRKSIKPNASSFGALVAGFYK----EEKYEDVNKVLQMMERYG 246 (402)
Q Consensus 201 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 246 (402)
.++|++..+.| +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555543 33444444444444 445555555555554443
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.89 E-value=0.00026 Score=53.64 Aligned_cols=60 Identities=12% Similarity=-0.093 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-C-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHch
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLR-H-----SV-----GAFNALLLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 172 (402)
+......+.+.|++++|+..|++..+.... | +. ..|+.+..++.+.|++++|+..+++.+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445566667777777777766554211 0 11 145555555555555555555555443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.82 E-value=1.5e-05 Score=56.86 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
.+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++.++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444444444555555555544444311 1334444444445555555555555555444
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.78 E-value=0.00011 Score=51.29 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=43.8
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 107 LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 107 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
+.+...+..+..+|...|++++|+..|++..+.+ +.+...|..+..+|...|++++|...|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566666667777777777777777776654 44556677777777777777777777766643
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.77 E-value=3.2e-05 Score=55.08 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 172 (402)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344455555666666666666666655543 4455556666666666666666666666654
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.72 E-value=0.00053 Score=46.42 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
.+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444445555555555555555554433 33444555555555555555555555555433
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00031 Score=47.62 Aligned_cols=62 Identities=18% Similarity=0.450 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444444455555555555555555444321 12344444444555555555555555554443
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.67 E-value=0.00064 Score=48.63 Aligned_cols=79 Identities=6% Similarity=-0.100 Sum_probs=50.4
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 128 HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+|+..|++..+.. +.+...+..+..+|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666665554 4556666677777777777777777777665442 334556666666677777777777776666
Q ss_pred Hh
Q 041936 208 DR 209 (402)
Q Consensus 208 ~~ 209 (402)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.60 E-value=0.00023 Score=53.80 Aligned_cols=98 Identities=8% Similarity=0.014 Sum_probs=59.1
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY----------KEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
.+.+.+++|.+.++...+.+ +.+...|+.+..++...+++ ++|+..|++.++.. +-+..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHH
Confidence 34556777777777777665 66777777777777766654 36666666665442 2244556666666
Q ss_pred HHhcC-----------ChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041936 191 FCESS-----------DSSSAYSILAEMDRKSIKPNASSFGALV 223 (402)
Q Consensus 191 ~~~~~-----------~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (402)
|...| ++++|++.|++.++. .|+...|...+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 66543 566666666666553 44444443333
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.52 E-value=0.00024 Score=53.72 Aligned_cols=87 Identities=6% Similarity=0.032 Sum_probs=51.4
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 262 CKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNF----------EEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
.+.+.+++|...++...+.... +...|..+..++...+++ ++|+..|++.++.... +...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 3445667777777777765322 566666666666666554 3666666666653221 345566666666
Q ss_pred HccC-----------ChHHHHHHHHHHHhC
Q 041936 332 CKGG-----------DYETALGFCKESIAK 350 (402)
Q Consensus 332 ~~~g-----------~~~~a~~~~~~~~~~ 350 (402)
...| ++++|.+.|+++++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5543 556666666655554
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.41 E-value=0.00066 Score=47.29 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041936 182 DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 182 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
..+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444443332 112333444444444444444444444433
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.20 E-value=0.019 Score=56.40 Aligned_cols=154 Identities=10% Similarity=0.040 Sum_probs=91.0
Q ss_pred HHHHhcCCcchHHH-HHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 83 NKLSEANYFNGISQ-YLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 83 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
......+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445677777765 44221 102223666777777888888776653211 113345667888
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+.
T Consensus 669 ~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 669 TLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 8888876555 2556788888888888888888888887643 33444445556666665555554
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
....|. ++....+|.+.|++++|.+++.+
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 444331 33344445555666665555544
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.046 Score=47.46 Aligned_cols=73 Identities=8% Similarity=-0.067 Sum_probs=38.2
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041936 214 PNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYS 290 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 290 (402)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 344455555444444555666655555555543 44444545555555556666666655555544 34444443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.03 E-value=0.0029 Score=43.57 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPNSS-VYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
....+...|++++|...+++..+... .+.. .+..+..+|...|++++|...+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45667788888888888888887532 2456 77788888888888888888888888764
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.00 E-value=0.002 Score=58.05 Aligned_cols=64 Identities=6% Similarity=0.057 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhh----cCC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 146 GAFNALLLALTIAKDYKEVKRVFIEFPKT----YGI-KPD-LDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+++.|..+|...|++++|+.++++..+. .|- -|+ ..+++.|...|...|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45666666666666666666666555321 111 122 34566666666666666666666665543
No 213
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.089 Score=40.32 Aligned_cols=100 Identities=6% Similarity=0.140 Sum_probs=61.8
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS 199 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 199 (402)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|... +. +..+.-.|.-.|+.++
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ-HS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-TC---------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh-CC---------HHHHHHHHHHhCCHHH
Confidence 45677777777776654 34567777777777777777777777766 21 4445555555666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 200 AYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 200 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
..++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665555554443 244445555566777777766644
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.91 E-value=0.0051 Score=55.44 Aligned_cols=93 Identities=11% Similarity=-0.104 Sum_probs=61.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHchhh----cC-CCC-CHHH
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHK---LRH----SVGAFNALLLALTIAKDYKEVKRVFIEFPKT----YG-IKP-DLDT 183 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~p-~~~~ 183 (402)
+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++..+- .| .-| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556778888888887766421 112 2456777888888888888888887766432 12 122 2356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888888888888888877654
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.89 E-value=0.067 Score=38.59 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
+...+......|+-++-.+++..+.. +..|++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444444445555555555444322 123444444445555555555555555555555444
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.046 Score=53.72 Aligned_cols=151 Identities=9% Similarity=0.090 Sum_probs=102.1
Q ss_pred cCCChhHHHH-HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 51 SESNPEKILE-ICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 51 ~~~~~~~al~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
..++.+.|.+ ++.. .++......++..+.+.|.+++|.++.+. +. .-.......|++++|
T Consensus 611 ~~~~~~~a~~~~l~~-------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 611 LRGEIEEAIENVLPN-------VEGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLA 671 (814)
T ss_dssp HTTCHHHHHHHTGGG-------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHH
T ss_pred HhCCHHHHHHHHHhc-------CCchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHH
Confidence 4567777765 4311 11133457888888899999988875531 11 113346789999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.++.+.+ .+...|..+...+.+.++++.|++.|..+ +. |..+...+...|+.+...++-+....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9987553 56789999999999999999999999988 32 55566666667877777666666555
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041936 210 KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
.| -++....+|.+.|++++|.+++.++
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 54 2344444555566666666655443
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.86 E-value=0.1 Score=45.34 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=53.5
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 041936 248 KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYF 325 (402)
Q Consensus 248 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 325 (402)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+.+.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4566677777666666688888888888888764 67667777777777888888888888877774 45555543
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.83 E-value=0.012 Score=40.18 Aligned_cols=67 Identities=6% Similarity=-0.074 Sum_probs=33.9
Q ss_pred CHHhHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 320 NSSVYFTMVYFMCKGGD---YETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 320 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
|...+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+.+.+..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444444432222 455555555555543 34455555555555555555555555555555433
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.81 E-value=0.016 Score=39.68 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=38.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVG-AFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
...+...|++++|+..|++..+.. +.+.. .+..+..+|...|++++|...|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445666777777777777776654 44555 6667777777777777777777776554
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.79 E-value=0.0066 Score=54.69 Aligned_cols=86 Identities=5% Similarity=-0.139 Sum_probs=62.4
Q ss_pred cCCcchHHHHHHHhh-------cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHh-----CC--CCCCHHHHHHHHH
Q 041936 88 ANYFNGISQYLEELK-------TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDE-----HK--LRHSVGAFNALLL 153 (402)
Q Consensus 88 ~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~--~~~~~~~~~~l~~ 153 (402)
.|++++|..++++.. ....+....+++.+..+|...|++++|+.++++..+ .| .+....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 467777777776655 122233456788888899999999999998888654 23 1223456888899
Q ss_pred HHHHcCCHHHHHHHHHHchh
Q 041936 154 ALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~ 173 (402)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999998888754
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.78 E-value=0.014 Score=40.68 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG------LSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+..-+..+...+...|+++.|..+|+...+.. -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44445567777777777777777777766531 1124556677777777777777777777777664
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.73 E-value=0.0071 Score=54.50 Aligned_cols=92 Identities=12% Similarity=-0.013 Sum_probs=60.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHhC-----C--CCCCHHH
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSG---LSPN----SSVYFTMVYFMCKGGDYETALGFCKESIAK-----G--WVPNFTT 358 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~ 358 (402)
+..+...|++++|+.++++..+.. ..|+ ..+++.+..+|...|++++|+.+++++++. | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556677788888777776531 1121 356677777787788888888777766542 2 1223345
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 359 MKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777778888888888888777665
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.72 E-value=0.21 Score=41.72 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHhCCCCCC---HhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc-CCHH
Q 041936 198 SSAYSILAEMDRKSIKPN---ASSFGALVAGFYKE-----EKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKL-RKCA 268 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~ 268 (402)
..|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4666667776664 444 45777788888774 88888888888888865222467777777888774 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHH
Q 041936 269 EAKALLDEMLSKGMK--PNSVTYSHF 292 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~--p~~~~~~~l 292 (402)
++.+.+++....... |+....+.+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 888888888887655 555444433
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.72 E-value=0.095 Score=37.83 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
-.|..++..++..+... +.+..-||.+|--....-+-+-..++++.+-+-. |.. ..|+.....
T Consensus 19 ldG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Dis----------~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DLD----------KCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CGG----------GCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhc----CcH----------hhhcHHHHH
Confidence 34555666666655554 3344555555555555555555555555553322 211 122222222
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 041936 202 SILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG 281 (402)
Q Consensus 202 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (402)
..+-.+ ..+...+...++.+...|+.++-.+++..+... .+|+....-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 222221 113344555555566666666666666664332 24555555666666666666666666666666655
Q ss_pred C
Q 041936 282 M 282 (402)
Q Consensus 282 ~ 282 (402)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.063 Score=41.13 Aligned_cols=129 Identities=9% Similarity=0.070 Sum_probs=90.5
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 041936 224 AGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFE 303 (402)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 303 (402)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445789999999987765 4678899999999999999999999988652 344555566778888
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLV 382 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (402)
+-.++-+.....|- ++.....+.-.|+++++.+++.+. |-.|.. .......|..+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 87777666665542 445555566789999999998554 312211 11122357778888887765
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.57 E-value=0.045 Score=37.19 Aligned_cols=64 Identities=8% Similarity=-0.006 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHhcCC---HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 109 NERFHAHSIILYGQANM---TEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
+...+..+..++...++ .++|..++++..+.+ +.+......+...+.+.|++++|+..|+.+.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444432222 455555555555544 44555555555555555666666655555543
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.52 E-value=0.021 Score=42.65 Aligned_cols=82 Identities=11% Similarity=0.158 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHccCChHHHH
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG---NFEEAKKFYRIMSNSGLSP--NSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
...+.+-|.+....|. ++..+...+.-++++.+ +.++++.+++...+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444445554444433 34444444555555555 3445555555555542 12 2333334444555556666666
Q ss_pred HHHHHHHhC
Q 041936 342 GFCKESIAK 350 (402)
Q Consensus 342 ~~~~~~~~~ 350 (402)
++++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 665555553
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.13 E-value=0.052 Score=37.72 Aligned_cols=64 Identities=8% Similarity=-0.096 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcC------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTR------PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
..+..+...+.+.++++.|...++..... +......++..+..++.+.|+++.|+..+++..+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445555555555555555555554421 11223344445555555555555555555555443
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.04 E-value=1.3 Score=43.67 Aligned_cols=258 Identities=10% Similarity=0.016 Sum_probs=123.5
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHchhhcCC------CCCHHHHHHHHHH
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVG--AFNALLLALTIAKDYKEVKRVFIEFPKTYGI------KPDLDTYNRVIKA 190 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~p~~~~~~~li~~ 190 (402)
+....|+.++++.+++.....+-..+.. .-..+.-+....|..+++..++......... .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3445666666666666544311012222 2222333344455545566666555443210 0111122223233
Q ss_pred HHhcCC-hhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH--HHHHccC
Q 041936 191 FCESSD-SSSAYSILAEMDRKSIKPNA--SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI--HSLCKLR 265 (402)
Q Consensus 191 ~~~~~~-~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~ 265 (402)
.+-.|. -+++.+.+..+....- ... ..-..+...+.-.|+.+....+++.+.+.. +..+...+. -++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 2345555555544321 111 111233344556677777777777666532 222233333 3344667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHH
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVTYS---HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALG 342 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 342 (402)
+.+.+..+++.+... ..|. .-|. ++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 777777777777654 1222 2222 34456777788777777887777642 1222222233334444566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHh
Q 041936 343 FCKESIAKGWVPNFTTMKSLVTGLAGASKV-SEAKELIGLVKE 384 (402)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 384 (402)
+++.+.+.+ .|....-..+.-+....|.. .++.+++..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666665544 34433333343444444443 466667776654
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.01 E-value=0.062 Score=40.07 Aligned_cols=81 Identities=10% Similarity=-0.024 Sum_probs=45.3
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHchhhcCCCC--CHHHHHHHHHHHHhcCChhHHH
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK---DYKEVKRVFIEFPKTYGIKP--DLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~ 201 (402)
..+.+-|.+..+.| +++..+...+..++++.+ +.++++.++++..+.. .| ....+-.+.-+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHH
Confidence 34444555544444 356666666666666666 4446666666665542 23 2334445555566666666666
Q ss_pred HHHHHHHhC
Q 041936 202 SILAEMDRK 210 (402)
Q Consensus 202 ~~~~~~~~~ 210 (402)
+.++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666654
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.68 E-value=0.12 Score=37.09 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChHHH
Q 041936 301 NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYET---ALGFCKESIAKGWVP--NFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 375 (402)
....+.+-|.+....|. ++..+-..+..++.+...... +..++++..+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444444444333 455555555555555554443 556666555543 12 233333445556666666666
Q ss_pred HHHHHHHHhcCCCCh
Q 041936 376 KELIGLVKEKFTKNV 390 (402)
Q Consensus 376 ~~~~~~~~~~~~~~~ 390 (402)
.+.++.+.+.-|.|.
T Consensus 94 ~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhCCCCH
Confidence 666666666544443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.54 E-value=0.17 Score=37.30 Aligned_cols=113 Identities=9% Similarity=0.122 Sum_probs=65.0
Q ss_pred CChhhHHHHHHHHHccCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHHH------HHhcCCHHHHHHHHHHHHhC
Q 041936 249 SGVSMYNVRIHSLCKLRKC------AEAKALLDEMLSKGMKPNSV-TYSHFIYG------FCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 249 ~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~~~~~~a~~~~~~m~~~ 315 (402)
-|..+|-..+....+.|++ ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666777 7777777777664 444421 22222221 12346677777777777654
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041936 316 GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVT 364 (402)
Q Consensus 316 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (402)
.-+. ...|......-.+.|++..|.+++...+..+.+ +...+...++
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 3333 555555555556677777777777777766533 3344444433
No 233
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.52 E-value=0.23 Score=33.68 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 337 YETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
.-+..+-+..+...++.|++....+.+++|.+.+++..|.++|+-++.+..+....|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3344444455555555555555555555555555555555555555555444433444443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.35 E-value=0.28 Score=36.26 Aligned_cols=104 Identities=11% Similarity=0.051 Sum_probs=66.2
Q ss_pred CCHhhHHHHHHHHhccCCH------HHHHHHHHHHHHCCCCCCh-hhHHHHHHHH------HccCCHHHHHHHHHHHHHC
Q 041936 214 PNASSFGALVAGFYKEEKY------EDVNKVLQMMERYGMKSGV-SMYNVRIHSL------CKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~------~~~~~~~~a~~~~~~~~~~ 280 (402)
-|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|...+..+ ...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566676677666666777 7777788777664 34432 2233333322 2346788888888888664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 281 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 281 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
+-.. ...|....+--.+.|+...|.+++...+..+.+|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3232 5555555565667888888888888888776654
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.22 E-value=0.23 Score=41.43 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-CChH
Q 041936 268 AEAKALLDEMLSKGMKPN---SVTYSHFIYGFCKD-----GNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKG-GDYE 338 (402)
Q Consensus 268 ~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~ 338 (402)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444444444443 233 33455555555552 56666666666665532211244455555555553 6666
Q ss_pred HHHHHHHHHHhCCCC
Q 041936 339 TALGFCKESIAKGWV 353 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~ 353 (402)
++.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666655433
No 236
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.52 E-value=0.51 Score=33.92 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 339 TALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
+..+-++.+...++.|++......+++|.+.+++-.|.++|+-++.+..+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 44444455555555566666666666666666666666666665555444444454444
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.41 E-value=2.7 Score=37.82 Aligned_cols=164 Identities=9% Similarity=0.067 Sum_probs=97.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCC--HH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERY--GMKSG---VSMYNVRIHSLCKLRKCAEAKALLDEMLS----KGMKPN--SV 287 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~p~--~~ 287 (402)
...|...+...|++.+|.+++..+... +.... ...+...++.|...+++.+|..+++++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355777888889999999888887642 21111 34567778888999999999999888642 222233 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhH-----HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNS-GLSPNSSVY-----FTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKS 361 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (402)
.+...+..+...+++.+|.+.|.+.... ...-|...+ ..++.... .+....-..++........-++...|..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iL-a~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL-SPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-SSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHhhcccccccHHHHH
Confidence 5667777888899999998888877643 111122222 22222222 2211222222332222222356778888
Q ss_pred HHHHHHcC--CChHHHHHHHHHHH
Q 041936 362 LVTGLAGA--SKVSEAKELIGLVK 383 (402)
Q Consensus 362 l~~~~~~~--g~~~~a~~~~~~~~ 383 (402)
++.+|... .+++.+.+.|+...
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHhchHhhhHHHHHHHHHHh
Confidence 88888754 45666666665543
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.25 Score=47.44 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=45.8
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 328 VYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
...|...|+++.|+++.++....- +.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344667899999999999988764 6678899999999999999999999988774
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.00 E-value=5.4 Score=40.86 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 150 ALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 150 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
.++..+...+..+.+.++..-. +.+....-.+..++...|++++|.+.|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455555666666665544333 123333344556666677777777776654
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.94 E-value=1.7e-06 Score=76.41 Aligned_cols=264 Identities=9% Similarity=0.063 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
..|+.+..+....+.+.+|++-| .+ ..++..|..++....+.|.+++-++.+...++.. .++..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---Ik---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH---Hh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 45666666666666666554321 11 2233345566666666666666666665554432 2223334566666
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDV 235 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 235 (402)
++.++..+.++.+ . .|+..-...+..-|...|.++.|.-+|..+. -|..|..++.+.|++..|
T Consensus 127 Ak~~rL~elEefl----~----~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 127 AKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HTSCSSSTTTSTT----S----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred HhhCcHHHHHHHH----c----CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence 6666654433222 1 3444445556666666666666554443321 233444455666666655
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
.+.- ++ .-++.||..+-.+|...+++.-|.-.--.++-. || -...++..|...|-+++-+.+++.-...
T Consensus 190 VdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 4322 11 356778999999999999988776655554422 11 1234677888999999999999887743
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 316 GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 316 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
-+....+|+-|.-.|++- ++++..+.++..-.+ .| .-.++++|.+...|.++.=++....
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr---iN---ipKviracE~ahLW~ElvfLY~~yd 318 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELFWSR---VN---IPKVLRAAEQAHLWAELVFLYDKYE 318 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHHTTTTCHHHHHHHHHHHT
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHHHHHhhHHHHHHHHhcch
Confidence 245778899999888876 455555555433222 11 1247899999999999988877543
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.84 E-value=1.3 Score=42.67 Aligned_cols=137 Identities=9% Similarity=0.025 Sum_probs=90.0
Q ss_pred CCCCCccchHHHHHHHhcCCC-hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-cchHHHHHHHhhc-------C
Q 041936 34 TPLTSKDKTRAALTLLKSESN-PEKILEICRAAALTPESHLDRLAFSIAINKLSEANY-FNGISQYLEELKT-------R 104 (402)
Q Consensus 34 ~~~~~~~~~~~~l~~l~~~~~-~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~-------~ 104 (402)
+...++.....+++.+...++ .+.|+.+|+......+.. +......++..+...++ --+|.+++.+..+ .
T Consensus 243 ~t~v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 243 ATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp CCSSSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 455677778888999988777 477999998886553211 22222233333333321 1234444433321 1
Q ss_pred CCCCc----------hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 041936 105 PDLQN----------ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 105 ~~~~~----------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 172 (402)
-...+ ..+...-+..+...|+++-|+.+-++..... +-+-.+|..|..+|...|+++.|+-.++.++
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111 1233333556778999999999999988764 6678999999999999999999999999885
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.59 E-value=6.2 Score=38.98 Aligned_cols=259 Identities=8% Similarity=-0.019 Sum_probs=138.6
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCchH--HHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-------CCCHHHHHHHH
Q 041936 82 INKLSEANYFNGISQYLEELKTRPDLQNER--FHAHSIILYGQANMTEHAVRTFKEMDEHKL-------RHSVGAFNALL 152 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~ 152 (402)
--++...|+.+++..++..........+.. .-..+.-+....|..+++..++.......- .+....-..+.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 345677888888988888776422122222 222223345556665677777776554220 01122222232
Q ss_pred HHH--HHcCCHHHHHHHHHHchhhcCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH--HHHH
Q 041936 153 LAL--TIAKDYKEVKRVFIEFPKTYGIKPDLDTYN--RVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGAL--VAGF 226 (402)
Q Consensus 153 ~~~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--~~~~ 226 (402)
-++ .-.++ +++.+.+..+.... .+...... .|...+...|+.+....++..+.+.. +..+...+ .-++
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGl 534 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHH
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHh
Confidence 233 33344 34455555554431 11111122 23334556788787888888776642 22333333 3344
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYN--VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE 304 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 304 (402)
...|+.+.+..+.+.+.... .|....-. ++.-+|+..|+......+++.+.+.. ..+......+.-++...|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 46788888888888877642 23222211 23446777888877777888887652 2233333333344555677777
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHHHHh
Q 041936 305 AKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDY-ETALGFCKESIA 349 (402)
Q Consensus 305 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 349 (402)
+.+++..+.+.+ .|....-..+.-+....|.. .++...+..+..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777777666543 34444334444444444443 567778887765
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.48 E-value=0.39 Score=34.39 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=7.9
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041936 295 GFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~ 314 (402)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 33344444444444443333
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.46 E-value=4.2 Score=36.62 Aligned_cols=258 Identities=9% Similarity=0.060 Sum_probs=146.1
Q ss_pred CChhHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH----HHHhcC
Q 041936 53 SNPEKILEICRAAA----LTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII----LYGQAN 124 (402)
Q Consensus 53 ~~~~~al~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~~ 124 (402)
++++.|++-+.... ...+..........++..|...++++...+.+..+....... ......++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 57777777664433 334455567788899999999999999988887766332222 222233333 232333
Q ss_pred CHHH--HHHHHHHhHh--CC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHH
Q 041936 125 MTEH--AVRTFKEMDE--HK-LRH---SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFC 192 (402)
Q Consensus 125 ~~~~--A~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~ 192 (402)
..+. -..+.+.+.. .| +.. .......|...+...|++.+|..++.++..+..-..+ ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3332 2222222211 11 112 2334567888899999999999999998543221222 345677788899
Q ss_pred hcCChhHHHHHHHHHHh----CCCCCC--HhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhH-----HHHHHH
Q 041936 193 ESSDSSSAYSILAEMDR----KSIKPN--ASSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSGVSMY-----NVRIHS 260 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~----~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~-----~~ll~~ 260 (402)
..+++..|..++.++.. ....|+ ...+...+..+...+++.+|-+.|.++.+.- ...+...+ ..++..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999887642 222222 2356667777888899998888887765421 11122212 222222
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q 041936 261 LCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKD--GNFEEAKKFYRIM 312 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~m 312 (402)
.. .+....-..+..........++...|..++.+|... .+++.+.+.|...
T Consensus 269 iL-a~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 269 VL-SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HH-SSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred Hh-CCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 22 221122222223322222234566778888887654 3455555555443
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.35 E-value=2.9 Score=42.80 Aligned_cols=147 Identities=17% Similarity=0.147 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-----------------
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKL----------------- 141 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~----------------- 141 (402)
..++..+...+.++.+.++..... .+....-.+..+|...|++++|.+.|++... |+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 346667777888888777665543 1222223456678888999999988876421 11
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC-C--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041936 142 ------RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP-D--LDTYNRVIKAFCESSDSSSAYSILAEMDRKSI 212 (402)
Q Consensus 142 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 212 (402)
..-..-|..++..+.+.+.++.+.++-...++..+-.+ + ...|..+.+++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 11224577888899999999988887776655432222 1 12588889999999999999999988876543
Q ss_pred CCCHhhHHHHHHHHhccCCHH
Q 041936 213 KPNASSFGALVAGFYKEEKYE 233 (402)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~ 233 (402)
+ ......++...+..|..+
T Consensus 970 r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHH
T ss_pred H--HHHHHHHHHHHHhCCChh
Confidence 3 445666666666555543
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.97 E-value=0.49 Score=41.89 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHhhHH
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR-----KSIKPNASSFG 220 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~ 220 (402)
..++..+...|+++++...+..+...+ +-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344555556666666666665554433 44555666666666666666666666665433 26666655433
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.54 E-value=0.65 Score=41.08 Aligned_cols=76 Identities=11% Similarity=0.186 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCChhhHHHH
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER-----YGMKSGVSMYNVR 257 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 257 (402)
+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 35567788889999999999999988763 66888999999999999999999999998754 5899987765444
Q ss_pred HH
Q 041936 258 IH 259 (402)
Q Consensus 258 l~ 259 (402)
-.
T Consensus 252 ~~ 253 (388)
T 2ff4_A 252 ER 253 (388)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.82 E-value=6.3 Score=34.66 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=26.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSG-----VSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
++..|...|++.+|.+++..+.+.=-..| ..+|..-++.|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44555555555555555555443100111 1223334445555555555555555543
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.67 E-value=0.14 Score=45.96 Aligned_cols=217 Identities=11% Similarity=0.131 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
|+..|..++....+.|.+++-..++....+. .....+=+.++.+|++.++..+-.+++. .|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 3346888888888889999888888776643 3333444578888888888655433221 355555666777
Q ss_pred HHHHcCCHHHHHHHHHHchhhc-------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTY-------------------GIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKP 214 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~-------------------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~ 214 (402)
-|...|.++.|.-+|..+..-. .-.-++.||..+-.+|...+++.-|.-.--.++-.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---- 228 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---- 228 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC----
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc----
Confidence 7777787777777776552110 11235667888888888888777665543333321
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-------CHH
Q 041936 215 NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-------NSV 287 (402)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-------~~~ 287 (402)
......++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- ++++..+.++....+=--| ...
T Consensus 229 -adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 229 -ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp -SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1123345566777888888888887766432 45667777777777764 5666666655433220011 234
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAK 306 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~ 306 (402)
.|.-++-.|.+-+++|.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 4666666666666666554
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.64 E-value=2.3 Score=30.68 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 283 KPNSVTYSHFIYGFCKDGN---FEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 283 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.|+..+--.+.-++++..+ ..+++.++.++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444443334444444443 3355666666655431112334444555566666666666666666654
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.14 E-value=7.9 Score=32.78 Aligned_cols=18 Identities=17% Similarity=0.012 Sum_probs=10.9
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 041936 296 FCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~ 313 (402)
|...|+...|..+++...
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 445566666666666554
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.98 E-value=9.6 Score=33.53 Aligned_cols=167 Identities=10% Similarity=-0.009 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhc----CCCCCchHHHHHHHHHHHhcC-CHHHHHHHHH----HhHhCCCC-CCHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKT----RPDLQNERFHAHSIILYGQAN-MTEHAVRTFK----EMDEHKLR-HSVG 146 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~----~~~~~~~~-~~~~ 146 (402)
....+...+.+.|+.++..+++..... -+-..+..+...++..+.... ..+.-.++.. +....... ....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888777776651 111233455666676666543 3333333333 33322100 0001
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHH
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFCESSDSSSAYSILAEMDRK--SIKPNASSFG 220 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~ 220 (402)
.=..++..|...|++.+|..++.++.+...-..| ...|-.-+..|...+++.++...+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 1225777888888888888888777553221111 234555667788888888888888766533 2223333222
Q ss_pred H----HHHHHh-ccCCHHHHHHHHHHHH
Q 041936 221 A----LVAGFY-KEEKYEDVNKVLQMME 243 (402)
Q Consensus 221 ~----l~~~~~-~~~~~~~a~~~~~~~~ 243 (402)
. -.-.+. ..+++..|...|-+..
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 123345 6788888877665543
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.18 E-value=5.1 Score=29.27 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 283 KPNSVTYSHFIYGFCKDGN---FEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 283 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.|+..+--.+.-++.+..+ ..+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444444445555443 3356666666655432212333344455666666666666666666664
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.92 E-value=4.6 Score=29.09 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLV 363 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (402)
+..+-++.+....+.|++....+.+++|.+.+|+..|.++++-.+.+- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 444555555555566666666666666666666666666666655542 23334454444
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.82 E-value=4.2 Score=30.61 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcC----CCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTR----PDLQN----ERFHAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
-.-+..+...+.++.|+-+.+.+... +...+ ..++..+..++...+++..|...|++..
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33445555566666666555554411 11101 1233444556666777777777777643
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.72 E-value=2.4 Score=31.91 Aligned_cols=125 Identities=7% Similarity=0.018 Sum_probs=68.0
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCC-------HHHHHHHHHHHHhcCCcchHHHHHHHhhc--CCCC
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLD-------RLAFSIAINKLSEANYFNGISQYLEELKT--RPDL 107 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~ 107 (402)
.+-..+-.-++.+-..+-++.|.-+...+....+..|+ ..++..+.+++...+++.+|...|++... +...
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 34455666777788888888887766654322222222 23566777888999999999999998651 1111
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 108 QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
........+- ....... ......+...--.+..+|.+.+++++|+.+++.++.+
T Consensus 98 k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 98 KTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111111000 0000000 0111234444455777888888888888888887543
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.52 E-value=1.9 Score=31.06 Aligned_cols=69 Identities=10% Similarity=-0.127 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHhcC---CcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 041936 71 SHLDRLAFSIAINKLSEAN---YFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
-.|++.+--...-++.+.. +..+++.+++.+...+.....+.+-.+..++.+.|++++|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3445555555555666654 34467777777764332233445556666788888888888888887765
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.23 E-value=4.5 Score=27.47 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
+.=++.+-++.+...++-|++....+.+.+|.+.+++..|+++|+-+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445666666666666667777777777777777777777777766643
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.08 E-value=4.7 Score=29.46 Aligned_cols=69 Identities=10% Similarity=-0.123 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHhcC---CcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 041936 72 HLDRLAFSIAINKLSEAN---YFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHK 140 (402)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 140 (402)
.|+..+-....-++.+.. +..+++.+++.+.........+..-.+..++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 456666666666666665 345677777777643332344444456667888888888888888887753
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.83 E-value=11 Score=33.76 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEH--KLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
....+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445555566666666666666665542 22233445555556666666666666665555
No 261
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=83.19 E-value=25 Score=31.44 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=96.3
Q ss_pred hcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 50 KSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 50 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
....+++.|+.+........ -...|..-.+.+...|++++|.++--... ++...+..+.+.+-.+=..-|+..--
T Consensus 340 ~~l~n~~lA~~lA~R~~LpG----Ad~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~spl 414 (494)
T 1bpo_A 340 NVLQNPDLALRMAVRNNLAG----AEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPL 414 (494)
T ss_dssp HTTCCHHHHHHHHHHTTCSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHH
T ss_pred hccCCHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHH
Confidence 34578888888877665443 33568888889999999999998887766 55677777776655544455777778
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMD 208 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 208 (402)
+.+|..+.+.| ..+..---.+++.....|+.+-.+.++.+ ..+..+...-..+ +..+..-|..+|.+..
T Consensus 415 L~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e----~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 415 LQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE----DKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc----CCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 88888888877 66665555667777777877666666543 3445555432222 3335566666665553
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=82.02 E-value=34 Score=32.17 Aligned_cols=322 Identities=9% Similarity=0.007 Sum_probs=167.8
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIIL 119 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 119 (402)
..+..+...+. .+++..+.++...+... +..| -..|..+...+. ....+++...+.... +.+....+-..-+..
T Consensus 8 ~~~~~a~~a~~-~~~~~~~~~l~~~l~~~-pL~~-yl~y~~l~~~l~-~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~ 81 (618)
T 1qsa_A 8 SRYAQIKQAWD-NRQMDVVEQMMPGLKDY-PLYP-YLEYRQITDDLM-NQPAVTVTNFVRANP--TLPPARTLQSRFVNE 81 (618)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHSGGGTTS-TTHH-HHHHHHHHHTGG-GCCHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHhhcCC-CcHH-HHHHHHHHhCcc-cCCHHHHHHHHHHCC--CChhHHHHHHHHHHH
Confidence 34556666665 46777777665544322 2211 123333332221 123445555554422 223334555566777
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS 199 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 199 (402)
+.+.+++...+..+.. .+.+...-.....+....|+..+|......+-... ......+..++..+.+.|....
T Consensus 82 l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 82 LARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHCCCCCH
Confidence 7788888877775543 15566666667778888899877777666663332 2334557888888887665543
Q ss_pred --HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC---------CCCCChh---hHHHHHHHHHccC
Q 041936 200 --AYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY---------GMKSGVS---MYNVRIHSLCKLR 265 (402)
Q Consensus 200 --a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~---~~~~ll~~~~~~~ 265 (402)
..+-++.+...| +...-..++..+ . .+.....+.+..+.+. ...++.. .+...+.-+.+ .
T Consensus 155 ~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 155 LAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-c
Confidence 333344444443 111111121111 0 0010000111111110 0112222 11122233333 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHH
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVT----YSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
+.+.|...+........ .+... +..+.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 78889999988865432 23322 2223333344453556666776655432 33333444444455679999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 342 GFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
..|+.|.... .....-.--+.+++.+.|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9998886532 12333344456677888999999999998875
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.43 E-value=4.9 Score=32.99 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=40.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 294 YGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
....+.|++++++.....-++... -|...-..++..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345567788888877777776643 36667777788888888888888777776654
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.37 E-value=9 Score=31.47 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
+.|++++|+.....-++.. |.|...-..++..+|-.|+++.|..-++.+
T Consensus 9 ~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444444444433333 334444444444444444444444444333
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.15 E-value=11 Score=25.46 Aligned_cols=74 Identities=9% Similarity=-0.011 Sum_probs=40.4
Q ss_pred CcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041936 90 YFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFI 169 (402)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (402)
.-++|..|-+.+...+. .+.+-..-+..+.+.|++++|..+.+.+. .||...|-.|- -.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 44555555555543332 11111112234566777777777666554 66766665543 345666677777666
Q ss_pred Hc
Q 041936 170 EF 171 (402)
Q Consensus 170 ~~ 171 (402)
.+
T Consensus 94 ~l 95 (116)
T 2p58_C 94 RL 95 (116)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.71 E-value=11 Score=25.49 Aligned_cols=47 Identities=9% Similarity=-0.089 Sum_probs=28.5
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
.+.+.|++++|..+.+.+. .||...|-.|- -.+.|..+++...+..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGL 94 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 4556677777766655543 56666665443 34666666666666555
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.05 E-value=16 Score=29.73 Aligned_cols=238 Identities=12% Similarity=0.018 Sum_probs=107.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC---HHHHHHHH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVG---AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD---LDTYNRVI 188 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 188 (402)
..+...++.|+.+.+..+++ .|..++.. .-...+...+..|+.+-+..+++. |..++ ..-.+. +
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~g~t~-L 76 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-----GADPVLRKKNGATP-F 76 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTCCCH-H
T ss_pred hHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-----CCCCcccCCCCCCH-H
Confidence 34555667888766555554 34333211 112345566677887666555543 32322 222222 3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHh---hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh------------
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNAS---SFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSM------------ 253 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------ 253 (402)
...+..|+.+ +++.+.+.|..++.. .++.+ ...+..|+.+ +++.+.+.|..++...
T Consensus 77 ~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~ 147 (285)
T 1wdy_A 77 LLAAIAGSVK----LLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKG 147 (285)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred HHHHHcCCHH----HHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccC
Confidence 3334455543 445555566554422 22333 3344556654 3444555554443220
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh--HHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS---VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSV--YFTMV 328 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~ 328 (402)
-.+.+...+..|+.+-+..+++. .|..++. .-.+.+ ...+..++.....++++.+.+.|..++... -...+
T Consensus 148 g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L 223 (285)
T 1wdy_A 148 GATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 11233444456665544443332 1443322 222233 333445555555667777777776655321 11223
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChHHHHHHH
Q 041936 329 YFMCKGGDYETALGFCKESIAKGWVPNF---TTMKSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~ 379 (402)
...+..|+.+-+..+++. .|..++. .-.+. +....+.|+.+-+.-++
T Consensus 224 ~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~-l~~A~~~~~~~i~~~Ll 273 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAVELKLKKIAELLC 273 (285)
T ss_dssp HHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcH-HHHHHHcCcHHHHHHHH
Confidence 334455665544333331 3433332 22223 33344556655444333
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.81 E-value=12 Score=30.68 Aligned_cols=211 Identities=12% Similarity=0.017 Sum_probs=91.9
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHH--HHHHHHHHHHHc
Q 041936 81 AINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVG--AFNALLLALTIA 158 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 158 (402)
.+...++.|+++.+..+++.-.......+.. -...+...+..|+.+-+..+ .+.|..++.. .-...+...+..
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELL----LRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTT-CCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCC-CCcHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCCHHHHHHHc
Confidence 4445566677766655555422111110111 11233344556665444333 3444333221 011233344556
Q ss_pred CCHHHHHHHHHHchhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh------------HHHHH
Q 041936 159 KDYKEVKRVFIEFPKTYGIKPD---LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASS------------FGALV 223 (402)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~------------~~~l~ 223 (402)
|+.+-+..+++. |..++ ...++. +...+..|+.+ +++.+.+.|..++... -...+
T Consensus 83 ~~~~~v~~Ll~~-----g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 83 GSVKLLKLFLSK-----GADVNECDFYGFTA-FMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp TCHHHHHHHHHT-----TCCTTCBCTTCCBH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred CCHHHHHHHHHc-----CCCCCccCcccCCH-HHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 666655555442 22222 112222 33334555543 4444555554443220 11233
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHh
Q 041936 224 AGFYKEEKYEDVNKVLQMMERYGMKSG---VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVT--YSHFIYGFCK 298 (402)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~ 298 (402)
...+..|+.+-+..+++. .|..++ ....+.+.. .+..++.....++++.+.+.|..++... -.+.+...+.
T Consensus 153 ~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 228 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228 (285)
T ss_dssp HHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 344456666554444432 133322 222233333 3345665555677777777776655321 1223444456
Q ss_pred cCCHHHHHHHHH
Q 041936 299 DGNFEEAKKFYR 310 (402)
Q Consensus 299 ~~~~~~a~~~~~ 310 (402)
.|+.+-+..+++
T Consensus 229 ~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 229 KKHLGLVQRLLE 240 (285)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHh
Confidence 677655444443
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.34 E-value=24 Score=27.54 Aligned_cols=56 Identities=9% Similarity=0.094 Sum_probs=36.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 041936 194 SSDSSSAYSILAEMDRKSIKPN-ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS 249 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (402)
.++..++.++|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3345577777777776654333 3456666666667777777777777777666555
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.08 E-value=18 Score=24.51 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041936 123 ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYS 202 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 202 (402)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+... -||...|-.|-. .+.|--+++..
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHH
Confidence 4467888888888877552 22222233556788999999998876653 788888877655 47788888888
Q ss_pred HHHHHHhCCCCCCHhhHH
Q 041936 203 ILAEMDRKSIKPNASSFG 220 (402)
Q Consensus 203 ~~~~~~~~g~~~~~~~~~ 220 (402)
.+.++..+| .|....|.
T Consensus 90 rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 888888876 44444443
No 271
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.91 E-value=39 Score=30.86 Aligned_cols=65 Identities=8% Similarity=0.110 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCC--CCch---HHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPD--LQNE---RFHAHSIILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
-...++.+++.|...+.++.|..+..+.. .+. ..+. .++..+...+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34566677777777777777777777664 111 1111 12222344456667777777776665543
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.38 E-value=19 Score=24.45 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=61.8
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
-....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+... -||...|-.|-. .+.|--+++.
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHH
Confidence 34567888888888877652 22222233556788999999999887663 788888877655 4678888888
Q ss_pred HHHHHHHhCCCCCCHhhHH
Q 041936 202 SILAEMDRKSIKPNASSFG 220 (402)
Q Consensus 202 ~~~~~~~~~g~~~~~~~~~ 220 (402)
..+.++..+| .|....|.
T Consensus 90 ~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 90 SRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 8888888776 44444443
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.00 E-value=33 Score=26.73 Aligned_cols=58 Identities=17% Similarity=0.087 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHhHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH
Q 041936 123 ANMTEHAVRTFKEMDEHKLRHS-VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL 181 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 181 (402)
.+...++.++|..|...|+-.. ...|......+...|++++|.++|+.-++. +..|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 4457899999999998776554 556788888899999999999999988654 555643
No 274
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=71.84 E-value=33 Score=26.63 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=38.4
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC-----HHHHHHHHHHHHHCCCCC
Q 041936 186 RVIKAFC---ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK-----YEDVNKVLQMMERYGMKS 249 (402)
Q Consensus 186 ~li~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 249 (402)
.+|+++. +..+++.|+-++-+|++.| .|.-..-..++-+.-.-|. ...|...++.....|.+-
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3444444 4578888888888888888 6655555555555544443 334555566666666433
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.80 E-value=54 Score=29.13 Aligned_cols=100 Identities=9% Similarity=-0.057 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhhc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHhh--H
Q 041936 146 GAFNALLLALTIAKDYKEVKRVFIEFPKTY-GIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR---KSIKPNASS--F 219 (402)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~--~ 219 (402)
.++..+...|.+.|++++|.+.|.++.... +...-...+-..++.+...+++..+...+.++.. .+-.++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 367788999999999999999999985432 2233456788889999999999999999988753 332333221 1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 220 GALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
..-+..+...+++..|-+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11222345678899998888776543
No 276
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=67.02 E-value=26 Score=26.51 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=23.0
Q ss_pred CCCHHHHH--HHHHHHHcCCChHHHHHHHHHHHhcC
Q 041936 353 VPNFTTMK--SLVTGLAGASKVSEAKELIGLVKEKF 386 (402)
Q Consensus 353 ~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (402)
.|....|- .....|...|..++...+|..+..+.
T Consensus 203 iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kD 238 (242)
T 3kae_A 203 VPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKD 238 (242)
T ss_dssp TTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcC
Confidence 55555543 23455677888888888888887763
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.96 E-value=63 Score=27.59 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHchhhcCCCCCHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVF----IEFPKTYGIKPDLDTYNR 186 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~p~~~~~~~ 186 (402)
..|.++..=|.+.+++++|++++..- ...+.+.|+...+-++- +-. ++.++++|......
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy-~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTF-RQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHH-HHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHH
Confidence 44555555566666666666654332 12344556655544433 333 34466777766666
Q ss_pred HHHHHHhcCChh-HHHHHHHHHHh----CC--CCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041936 187 VIKAFCESSDSS-SAYSILAEMDR----KS--IKPNASSFGALVAGFYKEEKYEDVNKVL 239 (402)
Q Consensus 187 li~~~~~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (402)
++..+.....-+ .=.++++++++ .| ..-|+.....+...|.+.+++.+|+.-|
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 666665544311 11122222211 11 2224455555666666666666655544
No 278
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=64.15 E-value=18 Score=27.65 Aligned_cols=14 Identities=7% Similarity=0.162 Sum_probs=6.9
Q ss_pred HhcCCcchHHHHHH
Q 041936 86 SEANYFNGISQYLE 99 (402)
Q Consensus 86 ~~~~~~~~a~~~~~ 99 (402)
+..|+.+.+..++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44455555554443
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.99 E-value=45 Score=26.77 Aligned_cols=90 Identities=14% Similarity=-0.000 Sum_probs=51.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSK--GMKP----NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYF 330 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 330 (402)
-++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 567778888888888888876542 2221 111222233333333333344445555532 3445555666677
Q ss_pred HHccCChHHHHHHHHHHHh
Q 041936 331 MCKGGDYETALGFCKESIA 349 (402)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~ 349 (402)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7788888888888766653
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.37 E-value=75 Score=31.78 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=67.2
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC------------------
Q 041936 81 AINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLR------------------ 142 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~------------------ 142 (402)
++..|...+.++-|.++...+. .+...--.+..+|...|++++|.+.|++.- .|+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCc
Confidence 5666777777766655443332 222222356667888888888888887642 1211
Q ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH----HHHHHHHHHHHhcC
Q 041936 143 -----HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL----DTYNRVIKAFCESS 195 (402)
Q Consensus 143 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~ 195 (402)
....-|..++..+-+.+.++.+.++-+..+.... +.|. ..|+.+.++++..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 0123578899999999999998888777765322 1122 35777777776554
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.95 E-value=34 Score=26.95 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=9.8
Q ss_pred HHHHHHcCCHHHHHHHHHHc
Q 041936 152 LLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~~ 171 (402)
+...+..|+.+.+..+++.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~ 32 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLF 32 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33444555555555555443
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=62.34 E-value=71 Score=26.96 Aligned_cols=168 Identities=9% Similarity=0.036 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHH----HHHhHhCCCCCCHHHHHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRT----FKEMDEHKLRHSVGAFNALL 152 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~l~ 152 (402)
.|.++..-+.+.+++++|.+++..-- ..+.+.|+...|-++ .+-..+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35566666667777777776654422 224455666555443 44445567777777777777
Q ss_pred HHHHHcCCHH-HHHHHHHHchh---hcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 041936 153 LALTIAKDYK-EVKRVFIEFPK---TYG--IKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGF 226 (402)
Q Consensus 153 ~~~~~~~~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (402)
..+.....-+ .-.++++++++ ..| -.-|+.....+...|.+.+++.+|...|- .|-.-|...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHH
Confidence 6665533111 11222222211 111 12356667777777888787777766553 11111344444444433
Q ss_pred hcc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 227 YKE---EKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 227 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
... |...++ +...-.+++ .|.-.|+...|..+|+...
T Consensus 176 ~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 332 322221 122222233 3445688888888888765
No 283
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=62.21 E-value=53 Score=25.44 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=35.0
Q ss_pred HHHHHH---hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC-----HHHHHHHHHHHHHCC
Q 041936 187 VIKAFC---ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK-----YEDVNKVLQMMERYG 246 (402)
Q Consensus 187 li~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 246 (402)
+|+++. +..|++.|+-++-+|++.|-.|.-..-..++-+.-.-|. ...|...++.....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 444444 457888888888888888866665555555555433332 234444444444444
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.93 E-value=78 Score=27.32 Aligned_cols=75 Identities=12% Similarity=0.191 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD--YETALGFCKESIAKGWVPNFTTMKSLVT 364 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (402)
...++.-|...|+.++|...++++...... .......+..++-+.++ .+...+++..+...|+-+.......+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 456677777777777777777777532111 12333444444444332 3456666666666665444444333333
No 285
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=59.27 E-value=56 Score=24.78 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=26.6
Q ss_pred hcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 041936 87 EANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHK 140 (402)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 140 (402)
-.|.+.+++-++..+ ...+...|..+. |-+..++..|+..++.+....
T Consensus 45 yngEY~R~Lf~L~~l----NT~Ts~YYk~LC--y~klKdYkkA~~~le~il~~k 92 (242)
T 3kae_A 45 LNGEYTRALFHLHKL----NTCTSKYYESLC--YKKKKDYKKAIKSLESILEGK 92 (242)
T ss_dssp HTTCHHHHHHHHHTC----CBHHHHHHHHHH--HHHTTCHHHHHHHHHHHHTTC
T ss_pred hcchHhHHHHHHHhc----chHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcc
Confidence 356666665555442 233444444443 566677777777777766433
No 286
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=59.16 E-value=84 Score=26.80 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHH----HHhHhCCCCCCHHHHHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTF----KEMDEHKLRHSVGAFNALL 152 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~l~ 152 (402)
.|.++..-+.+.+++++|.+++..-- ..+.+.|+...|-++- +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 46667777888888888888765422 2244556665554443 4445567788887777777
Q ss_pred HHHHHcCCHH-HHHHHHHHchh---hcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 041936 153 LALTIAKDYK-EVKRVFIEFPK---TYG--IKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGF 226 (402)
Q Consensus 153 ~~~~~~~~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (402)
..+.....-+ .-..+++++++ ..| -.-|......+...|.+.+++.+|...|- .|-.++...|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 7776655311 11222222211 112 23466777888899999999988887762 23343446665555444
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
...+... +++...-.+++. |.-.+++..|..+++...+
T Consensus 178 ~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 4433221 123333334443 4455788888887766553
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=58.56 E-value=10 Score=30.69 Aligned_cols=54 Identities=6% Similarity=0.069 Sum_probs=28.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHh--ccCCHHHHHHHHHHH
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNAS-------SFGALVAGFY--KEEKYEDVNKVLQMM 242 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 242 (402)
...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34455677777666666666655444422 2233433332 456666666666544
No 288
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.67 E-value=55 Score=24.17 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 041936 198 SSAYSILAEMDRKSIKPN-ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS 249 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (402)
+++.++|..|..+|+-.. +..|......+-..|++.+|.++|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346777777777665433 3455666666667777777777777777666555
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=57.44 E-value=71 Score=25.62 Aligned_cols=89 Identities=8% Similarity=-0.011 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcC--CCCC----chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 80 IAINKLSEANYFNGISQYLEELKTR--PDLQ----NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
--++.+....++++|.+++++.... +.+. ........+..-.....-.-+..+.+.+.. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 4456677778888888888766511 0110 111222223323333333334444444422 344555666667
Q ss_pred HHHHcCCHHHHHHHHHHc
Q 041936 154 ALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~ 171 (402)
.+.+.|+.++|.++|=+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 777777777777777554
No 290
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=57.03 E-value=68 Score=25.10 Aligned_cols=65 Identities=23% Similarity=0.186 Sum_probs=41.4
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC-----HHHHHHHHHHHHHCCCC
Q 041936 184 YNRVIKAFC---ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK-----YEDVNKVLQMMERYGMK 248 (402)
Q Consensus 184 ~~~li~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 248 (402)
+..+|+++. +..+++.|+-++-+|++.|-.|.-..-..++-+.-.-|. ...|...++.....|.+
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 344555554 457888899999999888877666555555555544333 34555666666666643
No 291
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.41 E-value=1.4e+02 Score=28.39 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
.+|..|.++|.+++|.++.++..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Confidence 45556667777777777666553
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.18 E-value=71 Score=24.98 Aligned_cols=49 Identities=8% Similarity=-0.117 Sum_probs=22.6
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGA--FNALLLALTIAKDYKEVKRVF 168 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~ 168 (402)
.+..|+.+.+..+++.+.+.|..++... -...+...+..|+.+-+..++
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 66 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHH
Confidence 4456666666666665544443332210 112233444556655444443
No 293
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=55.15 E-value=47 Score=28.44 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567778888899999988888875
No 294
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=54.65 E-value=43 Score=25.40 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=7.8
Q ss_pred HHHcCCHHHHHHHHH
Q 041936 155 LTIAKDYKEVKRVFI 169 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~ 169 (402)
.+..|+.+.+..++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 344555555555553
No 295
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.93 E-value=70 Score=26.21 Aligned_cols=19 Identities=32% Similarity=0.165 Sum_probs=8.9
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 041936 258 IHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~ 276 (402)
+...+..|+.+-+..+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3344455555544444443
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=53.14 E-value=54 Score=25.58 Aligned_cols=16 Identities=19% Similarity=-0.002 Sum_probs=7.3
Q ss_pred HHHHHcCCHHHHHHHH
Q 041936 153 LALTIAKDYKEVKRVF 168 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~ 168 (402)
...+..|+.+-+..++
T Consensus 47 ~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 47 HWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHH
Confidence 3444455554444444
No 297
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.96 E-value=47 Score=24.81 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=32.2
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHhccC
Q 041936 163 EVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK--SIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 163 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~ 230 (402)
.+.+-+.+..++.|++.+.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|
T Consensus 15 ~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444555555543 233344444455555666666666554 43444444444444444444
No 298
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=51.64 E-value=1.1e+02 Score=25.71 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 272 ALLDEMLSKGMKPNSVT--YSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN---SSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 272 ~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
.+.+.+.+.|..++... -.+.+...+..|..+.+..++.. .|..++ ..-.+.|..+ +..|+.+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHH
Confidence 34444556665543221 11223344556666554443321 232222 1222233333 3445543 3444
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 041936 347 SIAKGWVPNFTTMKSLVTGLAGASKVSE 374 (402)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (402)
+++.|..++..+ .+...++.|+.+-
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~i 316 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHSL 316 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHHH
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHHH
Confidence 556666665543 2233345566543
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.91 E-value=72 Score=23.53 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHHHHHHhHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC
Q 041936 127 EHAVRTFKEMDEHKLRHS-VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD 180 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 180 (402)
+++.++|..|...|+-.. +..|......+...|++++|.++|+.-++. +..|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 347888888888776544 456777888888889999999999887554 55553
No 300
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=50.81 E-value=79 Score=23.96 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=5.9
Q ss_pred HHHHHHHHHCCCCC
Q 041936 271 KALLDEMLSKGMKP 284 (402)
Q Consensus 271 ~~~~~~~~~~~~~p 284 (402)
.++.+.+.+.|..+
T Consensus 94 ~~iv~~Ll~~Gadi 107 (186)
T 3t8k_A 94 TELCKIFLEKGADI 107 (186)
T ss_dssp HHHHHHHHHTTCCS
T ss_pred HHHHHHHHHCCCCC
Confidence 34444444444433
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.46 E-value=48 Score=25.89 Aligned_cols=206 Identities=10% Similarity=0.043 Sum_probs=89.5
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh---HHHHHHHHhccC
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASS---FGALVAGFYKEE 230 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~~ 230 (402)
..++.|+.+.+..+++.-..- . .++.. -.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~-~-~~~~~-g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDV-R-QPDKE-NVTLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-T-CCCTT-SCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHcCCCc-C-CCCCC-CCCHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 456677777776666532110 0 11211 12344555666776544 44445553332111 122334445566
Q ss_pred CHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHH
Q 041936 231 KYEDVNKVLQMMERYGMKSGV---SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS---VTYSHFIYGFCKDGNFEE 304 (402)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~ 304 (402)
+.+-+ +.+.+.|..++. ...+ .+...+..|+.+- ++.+.+.|..++. .-.+.+..++.. +....
T Consensus 88 ~~~~v----~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~----~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~ 157 (240)
T 3eu9_A 88 HLSMV----VQLMKYGADPSLIDGEGCS-CIHLAAQFGHTSI----VAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVD 157 (240)
T ss_dssp CHHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSST
T ss_pred CHHHH----HHHHHcCCCCcccCCCCCC-HHHHHHHcCHHHH----HHHHHhcCCCccccCCCCCcHHHHHHHh-CChHH
Confidence 66544 444455544432 2222 3344455677654 4444455554432 222333333333 33223
Q ss_pred HHHHHHHHHhCCCCCCHHh---HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCCChHHHHHHH
Q 041936 305 AKKFYRIMSNSGLSPNSSV---YFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTM--KSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 305 a~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~ 379 (402)
..++ +.+.|..++... -...+...+..|+.+-+..+++ .|..++.... ...+....+.|+.+-+..++
T Consensus 158 ~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 158 PTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE----AGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp THHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HHHH---HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 3333 333443333211 1123334455677664444443 3433332110 12344456677777666665
Q ss_pred HHHH
Q 041936 380 GLVK 383 (402)
Q Consensus 380 ~~~~ 383 (402)
+...
T Consensus 231 ~~~~ 234 (240)
T 3eu9_A 231 EARQ 234 (240)
T ss_dssp HHC-
T ss_pred Hhhh
Confidence 5433
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.40 E-value=68 Score=22.80 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhh
Q 041936 78 FSIAINKLSEANYFNGISQYLEELK 102 (402)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (402)
...++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556666666777777777777765
No 303
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.66 E-value=1.3e+02 Score=25.90 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=46.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN--FEEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
...++.=|...|+.++|.+.++++...... ...+...+..++-+.++ .+...+++..+...|+-+.......+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 466777888889999999999988632111 12334445555554433 4567788888888776544444444433
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.45 E-value=71 Score=23.17 Aligned_cols=36 Identities=14% Similarity=-0.143 Sum_probs=14.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 335 GDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333444444444444433333333333334444433
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.88 E-value=77 Score=23.35 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=11.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHH
Q 041936 220 GALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
..++.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444444455555555555444
No 306
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.64 E-value=68 Score=22.93 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=29.4
Q ss_pred HHHCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLR-KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
+.+.|+..+.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 34455444432 333444444444 455566666666665555555554445555555443
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.58 E-value=67 Score=23.32 Aligned_cols=44 Identities=14% Similarity=0.056 Sum_probs=20.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33333333444455555555555444444444444444444444
No 308
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.70 E-value=96 Score=23.76 Aligned_cols=141 Identities=13% Similarity=0.023 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...-...+..+.+.+..+....+.+.+. . ++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~-~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALK-D---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTT-C---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHc-C---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 44444555555565555333333333322 1 24445555555566665532 3333333332 355555555666
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK 231 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 231 (402)
++.+.++.+....+. .+.+ .++...-...+.++...++.+ +...+..+.+ .++..+-...+.++.+.+.
T Consensus 104 aL~~~~~~~~~~~L~-~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 104 ALGQIGDERAVEPLI-KALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHCCGGGHHHHH-HHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHhCcHHHHHHHH-HHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 666666543333232 2322 345444455555555555432 3333333332 2344444555555555544
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.67 E-value=1.1e+02 Score=24.32 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 041936 198 SSAYSILAEMDRKSIKPN-ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS 249 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (402)
+...++|..|..+|+-.. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 566778888877765433 4456666677777788888888888777766555
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=46.30 E-value=59 Score=23.83 Aligned_cols=58 Identities=9% Similarity=0.129 Sum_probs=27.1
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44445433322 33344444444445556666666655544445544444455555444
No 311
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=46.03 E-value=75 Score=22.71 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 041936 277 MLSKGMKPNSVTYSHFIYGFCKDG-NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDY 337 (402)
Q Consensus 277 ~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 337 (402)
+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445565544432 23444444444 4556666666666665555555544444555555543
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.86 E-value=50 Score=27.16 Aligned_cols=205 Identities=9% Similarity=-0.023 Sum_probs=105.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh---hHHHHHHHHh
Q 041936 151 LLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNAS---SFGALVAGFY 227 (402)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~ 227 (402)
.+...+..|+.+-+..+++.- ..++...-.+.+...+..|+.+-+ +.+.+.|..++.. -.+.+ ...+
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L-~~A~ 103 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAG-----ALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTAL-YYAV 103 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-----GGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHH-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCC-----CCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHH-HHHH
Confidence 344566788888777776543 233322223445555667776544 4445556554432 23333 3445
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 041936 228 KEEKYEDVNKVLQMMERYGMKSGV---SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFCKDGNFE 303 (402)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 303 (402)
..|+.+-+..+++. |..++. ..+.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+
T Consensus 104 ~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 104 DSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVD 175 (285)
T ss_dssp HTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHH
Confidence 66777655544443 433332 2223455555667776544 4444445443 2212334455556778887
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
-+..+++.-..-... +..-.+..+...+..|+. ++++.+.+.|..++.... .-...|+.+-+.-+++.=.
T Consensus 176 ~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g~ 245 (285)
T 3kea_A 176 MMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEKHV 245 (285)
T ss_dssp HHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHcCC
Confidence 777666654443222 222222222333445553 455566777777766542 1245677776666666543
No 313
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.96 E-value=94 Score=23.17 Aligned_cols=53 Identities=6% Similarity=0.015 Sum_probs=34.7
Q ss_pred ccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHcCCChHHHHHHHHHHHhc
Q 041936 333 KGGDYETALGFCKESIAKGWVP--NFTTMKSLVT-G-----LAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~~ 385 (402)
+.|++-+|.++++..-...-.+ ....|..||+ . ..+.|+.+.|..++.+....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4478888888887776553344 4556666666 2 23467888888888877664
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.62 E-value=82 Score=22.37 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=10.5
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 041936 257 RIHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~ 277 (402)
++.=|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 444444445555555555554
No 315
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.25 E-value=81 Score=23.05 Aligned_cols=59 Identities=10% Similarity=0.141 Sum_probs=26.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 041936 277 MLSKGMKPNSVTYSHFIYGFCKDG-NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 277 ~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 336 (402)
+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 444555544332 22333333333 344555555555555444444444444444444443
No 316
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.11 E-value=73 Score=23.31 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=33.6
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 041936 241 MMERYGMKSGVSMYNVRIHSLCKLR-KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNF 302 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 302 (402)
.+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345555544433 334444554444 5556777777776665555655555555656555543
No 317
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=44.06 E-value=1.8e+02 Score=26.02 Aligned_cols=35 Identities=11% Similarity=-0.015 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041936 264 LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK 298 (402)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 298 (402)
.++.+.|+..+.+|.+.|..|....-..+..+...
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ed 302 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASED 302 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 35556666666666666555444433333333333
No 318
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.82 E-value=55 Score=24.15 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhh
Q 041936 78 FSIAINKLSEANYFNGISQYLEELK 102 (402)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (402)
...++.-|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4556666666777777777777765
No 319
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=42.74 E-value=1.1e+02 Score=23.18 Aligned_cols=93 Identities=8% Similarity=0.090 Sum_probs=46.4
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh---hHHHHHHHHhc-cC
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNAS---SFGALVAGFYK-EE 230 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~-~~ 230 (402)
.++.|+.+....++..-.. ..+...-.+.+...+..|+.+.-.++.+.+++.|..++.. -.+.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~~~~----~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYE----DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSS----CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhcCcc----cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3456777766655543210 1110111234444555666666666777777777665542 22233322221 23
Q ss_pred CHHHHHHHHHHHHHCCCCCCh
Q 041936 231 KYEDVNKVLQMMERYGMKSGV 251 (402)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~ 251 (402)
+.....++.+.+.+.|..++.
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSS
T ss_pred chhhHHHHHHHHHHCCCCCCc
Confidence 344455667777777755543
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.68 E-value=1.3e+02 Score=23.94 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=41.7
Q ss_pred HHHHHHHHHhHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC
Q 041936 127 EHAVRTFKEMDEHKLRHS-VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD 180 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 180 (402)
+++.++|..|...||-.. ...|......+...|++.+|..+|+.-++. +..|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 577789999988876554 456778888899999999999999988655 55553
No 321
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.39 E-value=55 Score=23.80 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=26.9
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
+.+.|+.++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34444444332 223333333334 4456666666655554445554444445554444
No 322
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.95 E-value=99 Score=22.57 Aligned_cols=43 Identities=9% Similarity=0.206 Sum_probs=17.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG 335 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 335 (402)
+..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333344445555555544433333333333333333333
No 323
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.84 E-value=65 Score=20.40 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=32.8
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 041936 311 IMSNSGLSPNSSVYFTMVYFMCKGG-DYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASK 371 (402)
Q Consensus 311 ~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (402)
.+.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455566555433 33444444443 445566677766665544555565556666665554
No 324
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.81 E-value=1.1e+02 Score=22.94 Aligned_cols=53 Identities=8% Similarity=0.127 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 041936 198 SSAYSILAEMDRKSIKPN-ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG 250 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (402)
+...++|..|..+|+-.. +..|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 346667777777765433 34556666666677777777777777777665553
No 325
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.37 E-value=1.6e+02 Score=24.74 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4566777888888888888888764
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.06 E-value=1.1e+02 Score=22.87 Aligned_cols=53 Identities=8% Similarity=0.142 Sum_probs=35.2
Q ss_pred HHHHHHHHhHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH
Q 041936 128 HAVRTFKEMDEHKLRHS-VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL 181 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 181 (402)
.+.++|..|...|+-.. +..|......+-..|++.+|.++|+.-++. +..|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHH
Confidence 36667777777665543 445666777777788888888888777543 455543
No 327
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=39.92 E-value=1.3e+02 Score=23.30 Aligned_cols=17 Identities=0% Similarity=0.012 Sum_probs=8.3
Q ss_pred HHHHcCCHHHHHHHHHH
Q 041936 154 ALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~ 170 (402)
..+..|+.+-+..+++.
T Consensus 43 ~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 43 IAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33445555555555443
No 328
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.25 E-value=91 Score=22.61 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=25.2
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 173 KTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 173 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
+..|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 11 ~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 11 RQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344555544322 2223333333 4556666666665554444444443444444333
No 329
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=38.96 E-value=96 Score=21.55 Aligned_cols=70 Identities=10% Similarity=0.086 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSA 200 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 200 (402)
.+.+|+.-+++.... ++|......++..+-.. ++.++++.+...+..|+ ++.++...++...+.|-++..
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~ 72 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED 72 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH
Confidence 345555555555433 34444444444444332 44555555555444454 234455555555555544333
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.96 E-value=91 Score=23.18 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=32.2
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK--GMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 301 (402)
+.+.|+..+.. -..++..+...++.-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34455544332 444555555555666666666666655 444555554445555555553
No 331
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=38.92 E-value=1.1e+02 Score=28.33 Aligned_cols=87 Identities=13% Similarity=0.131 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhc--CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 041936 77 AFSIAINKLSEA--NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154 (402)
Q Consensus 77 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (402)
.|..-+..+..+ .+.+.....++++..+-...+..-..-++..|.+.|-.+.|.++++.+-..-+ .+...+ ..+..
T Consensus 481 LW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL~~ 558 (570)
T 3f3f_C 481 LWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESIAN 558 (570)
T ss_dssp THHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------
T ss_pred chhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHHHH
Confidence 455555555543 34455667777777555556666777888999999999999999998765432 233344 66678
Q ss_pred HHHcCCHHHHH
Q 041936 155 LTIAKDYKEVK 165 (402)
Q Consensus 155 ~~~~~~~~~a~ 165 (402)
|+++|+++.+.
T Consensus 559 f~rA~~~~~Vk 569 (570)
T 3f3f_C 559 FSRAGKYELVK 569 (570)
T ss_dssp -----------
T ss_pred HHHcCChhhcc
Confidence 88888887653
No 332
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=38.77 E-value=27 Score=26.99 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=11.5
Q ss_pred HHHHhcCCHHHHHHHHHHhH
Q 041936 118 ILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~ 137 (402)
..|.+.|.+++|.++|++..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHccchHHHHHHHHHHh
Confidence 34556666666666666543
No 333
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.07 E-value=2.4e+02 Score=25.82 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCH--hhH-HHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKS-IKPNA--SSF-GALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
...+|.+++.|...+.++.|..+..+..--. ..++. ..| --+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3456777777777777777777777663110 00111 111 22345556667777777777666543
No 334
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=36.84 E-value=1.4e+02 Score=22.96 Aligned_cols=19 Identities=16% Similarity=0.294 Sum_probs=9.8
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 041936 152 LLALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~ 170 (402)
+...+..|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455555555555544
No 335
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=35.91 E-value=1e+02 Score=23.97 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=15.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHh
Q 041936 363 VTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
+......|+.+.+.++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4445667777788888777765
No 336
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.72 E-value=1.1e+02 Score=23.69 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=9.3
Q ss_pred HHHHhcCCcchHHHHHHH
Q 041936 83 NKLSEANYFNGISQYLEE 100 (402)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~ 100 (402)
...++.|+++....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334455555555555544
No 337
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=35.66 E-value=1.9e+02 Score=24.06 Aligned_cols=55 Identities=4% Similarity=0.027 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 041936 43 RAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLE 99 (402)
Q Consensus 43 ~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 99 (402)
+.++......|+.+.+..+++. +...+...+..-+ +-+...++.|+.+-+.-+++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~-TpLh~A~~~g~~~iv~~Ll~ 80 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGW-TPLHNAVQMSREDIVELLLR 80 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCC-CHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCc-CHHHHHHHcCCHHHHHHHHH
Confidence 3455555667888776666543 3332222111011 12333455666654444443
No 338
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=35.62 E-value=47 Score=21.49 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=19.0
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE 193 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 193 (402)
.++|...|.+|++..+|.|+. +|...+...+.
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~ 47 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKIVF 47 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHcc
Confidence 466667777776666666654 45555544443
No 339
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=35.45 E-value=1.4e+02 Score=22.50 Aligned_cols=137 Identities=14% Similarity=0.025 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 041936 78 FSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI 157 (402)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (402)
-...+..+.+.+.-+....+.+.+. .++..+-...+.++...+..+ +...+..+.. .++...-...+.++..
T Consensus 31 r~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 31 RRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3344444444444333333333332 223444445555556666543 3333333332 3555566666666666
Q ss_pred cCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 041936 158 AKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK 231 (402)
Q Consensus 158 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 231 (402)
.++.+....+...+ . .++...-...+.++.+.++. .+...+..+.. .++..+-...+.++...|.
T Consensus 103 ~~~~~~~~~L~~~l-~----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 103 IGDERAVEPLIKAL-K----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HCCGGGHHHHHHHT-T----CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred hCcHHHHHHHHHHH-c----CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 66643333333322 2 34555555555555555543 23333334433 2345555555555555554
No 340
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=35.41 E-value=77 Score=19.40 Aligned_cols=46 Identities=11% Similarity=-0.019 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA 158 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (402)
.++.++..+++..-.++++..+++..+.| ..+...|-.-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 45566666777777777888888877777 56677776666665554
No 341
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.20 E-value=1.6e+02 Score=22.91 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 041936 299 DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG 335 (402)
Q Consensus 299 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 335 (402)
-.+.+.|+.++.+|++.| .|....-..++.+.-..|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 355666666666666666 444444444444444444
No 342
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=34.44 E-value=2.5e+02 Score=25.02 Aligned_cols=140 Identities=11% Similarity=0.062 Sum_probs=74.1
Q ss_pred ChhHHHHHHHHHHhC--------CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-C---CChhhHHHHHHHHHc
Q 041936 196 DSSSAYSILAEMDRK--------SIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGM-K---SGVSMYNVRIHSLCK 263 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~--------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~~ll~~~~~ 263 (402)
..++...+++..... ++..+......+... ..|+..++..+++.+..... . ....+-..+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 345666666666543 233455556666554 45788888887777654321 0 011222222111111
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC----
Q 041936 264 LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFC---KDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD---- 336 (402)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---- 336 (402)
... . ...+...+..++.++. +..+.+.|+.++.+|.+.|..|....-..+..+.-..|.
T Consensus 244 ~~~-------------~-~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 244 RSA-------------R-FDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp CCC-------------C----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred hhh-------------c-cCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 100 0 0011122223444443 457899999999999999887766655666666665553
Q ss_pred -hHHHHHHHHHHHhCC
Q 041936 337 -YETALGFCKESIAKG 351 (402)
Q Consensus 337 -~~~a~~~~~~~~~~~ 351 (402)
...|...++.....|
T Consensus 310 a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 310 AMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 234445555555556
No 343
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=34.18 E-value=34 Score=24.02 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKV 238 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (402)
|.-.|...+..++.+-|.++++-..+.| +...|.+++-.|...=+++.++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4455666667777777777777777766 566777777777777666666544
No 344
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.77 E-value=1.7e+02 Score=22.73 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 300 GNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 300 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
.+.+.|+.++.+|++.|..|....-..++.+.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44555555555555554444333333333333
No 345
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=33.61 E-value=1.3e+02 Score=27.69 Aligned_cols=87 Identities=9% Similarity=0.014 Sum_probs=41.8
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 112 FHAHSIILYGQ--ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 112 ~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
.|..-+..+.. ..+.+.......++..+=.-.+..--..++..|.+.|-.+.|.++++.+-.+ ..-+...| ..+.
T Consensus 481 LW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k--~l~~g~~g-eAL~ 557 (570)
T 3f3f_C 481 LWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQ--MLSAHNII-ESIA 557 (570)
T ss_dssp THHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------
T ss_pred chhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--HHHCccHH-HHHH
Confidence 34444443332 3445556666666665433445667788999999999999999999988432 12333445 6777
Q ss_pred HHHhcCChhHHH
Q 041936 190 AFCESSDSSSAY 201 (402)
Q Consensus 190 ~~~~~~~~~~a~ 201 (402)
.|+++|+++.+.
T Consensus 558 ~f~rA~~~~~Vk 569 (570)
T 3f3f_C 558 NFSRAGKYELVK 569 (570)
T ss_dssp ------------
T ss_pred HHHHcCChhhcc
Confidence 889999887653
No 346
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.48 E-value=1.2e+02 Score=25.71 Aligned_cols=16 Identities=31% Similarity=0.183 Sum_probs=9.5
Q ss_pred HHcCCChHHHHHHHHH
Q 041936 366 LAGASKVSEAKELIGL 381 (402)
Q Consensus 366 ~~~~g~~~~a~~~~~~ 381 (402)
.++.|+.+-+..+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3455776666666654
No 347
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.24 E-value=1.5e+02 Score=22.08 Aligned_cols=49 Identities=8% Similarity=-0.048 Sum_probs=25.9
Q ss_pred CCcchHHHHHHHhhcCCCCC--chHHHHHHHH------HHHhcCCHHHHHHHHHHhH
Q 041936 89 NYFNGISQYLEELKTRPDLQ--NERFHAHSII------LYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~------~~~~~~~~~~A~~~~~~~~ 137 (402)
|++=+|.++++.+=.....+ ...++..+|. ...+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666655333233 3445555554 2334566666666666544
No 348
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=32.81 E-value=3.8e+02 Score=26.61 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=88.1
Q ss_pred HHHHHHHHhcCCh---hHHHHHHHHHHhCC----CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 041936 185 NRVIKAFCESSDS---SSAYSILAEMDRKS----IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVR 257 (402)
Q Consensus 185 ~~li~~~~~~~~~---~~a~~~~~~~~~~g----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (402)
..++...|..|+. +.|.+.|+.....+ ++||. -..+...-.+.|..++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 4466677777764 46777787766542 44543 233333334567777777777777764 344445677
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHH
Q 041936 258 IHSLCKLRKCAEAKALLDEMLSKG-MKPNSVTYSHFIYGFCKD-GNFEEAKKFYRIMSNS---GLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~ 332 (402)
+.+++-..+.+...++++...... +++. .... ++.+.... ...+.|++++.+=-+. ........+..++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888888888888887766532 3322 2222 33333322 2234555555442211 12223345677777776
Q ss_pred ccCChHHHHHHHHHHHhC
Q 041936 333 KGGDYETALGFCKESIAK 350 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~ 350 (402)
..-.-++-.+-++...+.
T Consensus 843 ~~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKKN 860 (909)
T ss_dssp TTCCSHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHhh
Confidence 655444444555555443
No 349
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.80 E-value=2.2e+02 Score=23.87 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC--hHHHHHHHHHHHhCCCCCCHHHH
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD--YETALGFCKESIAKGWVPNFTTM 359 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~ 359 (402)
...++.-|...|+.++|...++++...... .......+..++-+.++ .+.+.+++..+.+.|+-+.....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 456788888899999999999888632111 12333444445544333 45566777777766654444433
No 350
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=32.71 E-value=1.5e+02 Score=21.88 Aligned_cols=20 Identities=5% Similarity=-0.107 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHccCCHHHHH
Q 041936 252 SMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~ 271 (402)
.+|.-++..+.+...+-+..
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l 176 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSL 176 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHH
Confidence 33444444433333333333
No 351
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.43 E-value=1.6e+02 Score=22.19 Aligned_cols=80 Identities=14% Similarity=-0.049 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 041936 143 HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGAL 222 (402)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 222 (402)
++...-...+.++...+..+....+.+.+ . .++...-...+.++.+.++.+. ...+..+.. .++..+-...
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l-~----d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a 127 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKAL-K----DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAA 127 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHT-T----CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHH-c----CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHH
Confidence 34444444555555555433333333222 2 2344444455555555554332 222222322 2344444444
Q ss_pred HHHHhccCC
Q 041936 223 VAGFYKEEK 231 (402)
Q Consensus 223 ~~~~~~~~~ 231 (402)
+.++.+.++
T Consensus 128 ~~aL~~~~~ 136 (201)
T 3ltj_A 128 AFALGEIGD 136 (201)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhCC
Confidence 444444444
No 352
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=32.38 E-value=58 Score=26.34 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=27.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCC-------CHhhHHHHHHHHh--ccCCHHHHHHHHHHH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKP-------NASSFGALVAGFY--KEEKYEDVNKVLQMM 242 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 242 (402)
..+..|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+-+..+++.-
T Consensus 19 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 19 DAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3445666766666666655554322 2233444444443 346666666555543
No 353
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=32.14 E-value=36 Score=20.40 Aligned_cols=10 Identities=20% Similarity=-0.041 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 041936 199 SAYSILAEMD 208 (402)
Q Consensus 199 ~a~~~~~~~~ 208 (402)
+|.+.|.+|+
T Consensus 4 Eae~aF~~lL 13 (59)
T 2b7e_A 4 EAEKEFITML 13 (59)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 354
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.99 E-value=1.9e+02 Score=22.63 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041936 265 RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFC 297 (402)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 297 (402)
.+++.|+..+-+|++.|..|....-..++.+..
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~AsE 81 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISACE 81 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 455555555555555554444443333333333
No 355
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.21 E-value=68 Score=23.11 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=23.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
.++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444444445556666666665555555555444555555544
No 356
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=29.88 E-value=1.7e+02 Score=21.58 Aligned_cols=134 Identities=10% Similarity=0.101 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHhc-CCcchHHHHHHHhhcCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC-CCCCHHH
Q 041936 71 SHLDRLAFSIAINKLSEA-NYFNGISQYLEELKTRP-DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHK-LRHSVGA 147 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 147 (402)
-..+..-+..++..+... ..-..+..++..+-..+ ...+..-+..++.........+....+|+.+-..+ -..+..-
T Consensus 34 G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e 113 (183)
T 1s6c_A 34 GVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEE 113 (183)
T ss_dssp SEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHH
T ss_pred CcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHH
Confidence 344555555555554433 23345556666654222 23343334444444444444556666676664322 1344444
Q ss_pred HHHHHHHHH-HcCC-----------HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 148 FNALLLALT-IAKD-----------YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 148 ~~~l~~~~~-~~~~-----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+..++..+. ..|. .+.+..+|..+-.. .....+|.-++..+.+...+-.....|+.+
T Consensus 114 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d---~dG~i~~~Ef~~~~~~~~~~~~~l~~~d~~ 182 (183)
T 1s6c_A 114 MMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKN---KDGIVTLDEFLESXQEDDNIMRSLQLFQNV 182 (183)
T ss_dssp HHHHHHHHHHHTC-----------CHHHHHHHHHHHCTT---CSSEECHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCC---CCCcEeHHHHHHHHhcChHHHHHHHHhhcc
Confidence 444443331 1132 25677777776221 223466777777777776677777766654
No 357
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.35 E-value=1.1e+02 Score=19.27 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=4.4
Q ss_pred HHHHHHHHHHC
Q 041936 270 AKALLDEMLSK 280 (402)
Q Consensus 270 a~~~~~~~~~~ 280 (402)
+.++++.+.+.
T Consensus 36 ~~el~~~l~~~ 46 (83)
T 2fu4_A 36 AEDLYKRLIDM 46 (83)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 33444444333
No 358
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.34 E-value=76 Score=22.49 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=22.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444556666666655544445554444555555444
No 359
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=28.61 E-value=66 Score=20.11 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=17.2
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC 192 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 192 (402)
.++|...|.+|.++.++.|+. +|...+...+
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~ 44 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNA-SWEQAMKMII 44 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHc
Confidence 456666666666666655543 4555554444
No 360
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.57 E-value=98 Score=21.89 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=24.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDY 337 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 337 (402)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4444444555556666666666655445555544445555555543
No 361
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.39 E-value=1.6e+02 Score=20.77 Aligned_cols=57 Identities=9% Similarity=0.017 Sum_probs=41.8
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQY 97 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 97 (402)
.....+..|+......++.+.|.+++++..... +.+.|.+.+..|-..=+++-++++
T Consensus 30 KkDkLykDAietAa~S~d~elaEeLL~yFVe~g----~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 30 KKDSLYKDAMQYASESKDTELAEELLQWFLQEE----KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SCCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC----SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC----chHHHHHHHHHHHhccChHHHHHH
Confidence 345667788888888888888888888887654 556777777777776666666554
No 362
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=28.34 E-value=1.9e+02 Score=21.79 Aligned_cols=27 Identities=0% Similarity=0.186 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHH
Q 041936 235 VNKVLQMMERYGMKSGVSMYNVRIHSL 261 (402)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (402)
+..+++.+.+.|.-.|...-...+...
T Consensus 52 ie~vl~~L~~~g~ldD~rfA~~~vr~~ 78 (177)
T 3e3v_A 52 ISEIINKLIDLDLINDKNYAESYVRTM 78 (177)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 334444444444433333333333333
No 363
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=28.21 E-value=56 Score=20.83 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=18.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 176 GIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 176 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+++|++.||+-+...+-+..-..+++.+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 55666666766666555554444555444443
No 364
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.01 E-value=57 Score=27.90 Aligned_cols=25 Identities=8% Similarity=0.219 Sum_probs=19.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (402)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888888887775
No 365
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.46 E-value=90 Score=22.43 Aligned_cols=46 Identities=9% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 336 (402)
.++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444545555666666666665555555554444455555443
No 366
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=27.01 E-value=2e+02 Score=21.65 Aligned_cols=115 Identities=6% Similarity=0.050 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
.+.+..++..+.+.|.--|...-...+......|.+. ...+-.++..+|+..+ +....+..+......+.|..++++
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~K 125 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAEK 125 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHHH
Confidence 4567788888899888866665566677666555443 3567778888888532 223332221111123455666554
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHh
Q 041936 347 SIAK-GWVPNFTTMKSLVTGLAGASK-VSEAKELIGLVKE 384 (402)
Q Consensus 347 ~~~~-~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 384 (402)
-... .-.++.....-++..+.+.|- ++.+..+++.+..
T Consensus 126 k~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~ 165 (177)
T 3e3v_A 126 LANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDL 165 (177)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcC
Confidence 3322 212334556677888888885 6666677777654
No 367
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=26.92 E-value=3.1e+02 Score=23.67 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
...++.-|...|+.++|.+.++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4556777777788888888777775
No 368
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=26.05 E-value=1.8e+02 Score=20.81 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=7.1
Q ss_pred HHHHcCCHHHHHHHH
Q 041936 154 ALTIAKDYKEVKRVF 168 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~ 168 (402)
..++.|+.+.+..++
T Consensus 14 ~A~~~g~~~~v~~ll 28 (165)
T 3twr_A 14 EAAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHHTCHHHHHHHC
T ss_pred HHHHhCCHHHHHHHH
Confidence 334445555554444
No 369
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.39 E-value=2.3e+02 Score=21.75 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=23.5
Q ss_pred HHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 83 NKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKE 135 (402)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 135 (402)
...++.|+.+.+..+++.-.......+..-. ..+...+..|+.+-+..+++.
T Consensus 8 ~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHTTCHHHHHHHHTTTCSCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhcCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHHHc
Confidence 3445566665555555441111111121111 223334556777666666654
No 370
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.94 E-value=2.1e+02 Score=21.07 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041936 268 AEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS 318 (402)
Q Consensus 268 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 318 (402)
+.+..++..+.+.|.--|...-...+......| .....+-.++..+|+.
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 344455555555554433333333344333322 1233444455555543
No 371
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.75 E-value=2.1e+02 Score=24.15 Aligned_cols=46 Identities=4% Similarity=-0.099 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHccCChHHHHHHHHH
Q 041936 296 FCKDGNFEEAKKFYRIMSNSGLSPNS---SVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
.+..|+.+ +.+.+.+.|..++. .-.+.|. ..+..|+.+-+..+++.
T Consensus 218 A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 218 AILINWED----VAMRFVEMGIDVNMEDNEHTVPLY-LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHH-HHHHTCCHHHHHHHHHH
T ss_pred HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHH-HHHHhChHHHHHHHHHc
Confidence 34556654 33444455554432 2222333 33455776666666554
No 372
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.71 E-value=3.2e+02 Score=23.11 Aligned_cols=49 Identities=6% Similarity=0.131 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 041936 198 SSAYSILAEMDRKSIKPNA--SSFGALVAGFYKEEKYEDVNKVLQMMERYG 246 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (402)
....++-.-+-.-.++|.. -+....|....+.+++..|-.+-+++.+.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3344444444444444432 244555666777777777777777777655
No 373
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.31 E-value=3.2e+02 Score=23.07 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 302 FEEAKKFYRIMSNSGLSPNS--SVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
..+..++-.-+-...+.|.. -+...-|....+.+++..|..+.+++++.+
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34444444444444444432 233444556667777777777777777664
No 374
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=24.15 E-value=51 Score=23.35 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhh
Q 041936 70 ESHLDRLAFSIAINKLSEANYFNGISQYLEELK 102 (402)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (402)
+..-|...+...+..+...++++++..+++.+.
T Consensus 55 P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~ 87 (124)
T 3vu7_H 55 PMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMK 87 (124)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 344566667777777777888988888876665
No 375
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.08 E-value=99 Score=24.60 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=35.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHH--ccCCHHHHHHHHHHHH
Q 041936 223 VAGFYKEEKYEDVNKVLQMMERYGMKSGVS-------MYNVRIHSLC--KLRKCAEAKALLDEML 278 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~ 278 (402)
+...++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 334557788998888888877766555533 2334444432 5688877777777654
No 376
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=24.01 E-value=1.8e+02 Score=20.08 Aligned_cols=75 Identities=20% Similarity=0.110 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS-GLSPNSSVYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
+.+|..-+++.... .+|......++..+... ++.|+++.+...+. |+ .+.++...++...+.|-.+.. +.|.
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~ 76 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWL 76 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHH
Confidence 44455555554433 23444444444444333 44555555554432 44 234445555555555544333 3344
Q ss_pred HHH
Q 041936 346 ESI 348 (402)
Q Consensus 346 ~~~ 348 (402)
.|.
T Consensus 77 ~m~ 79 (119)
T 1wty_A 77 EML 79 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 377
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.28 E-value=5.7e+02 Score=25.51 Aligned_cols=131 Identities=8% Similarity=0.023 Sum_probs=66.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 195 (402)
++..+...|.++-|.++...+ +.+...--.+..+|...|++++|.+.|++.- .|+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~--------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAV--------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGG---------
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccc---------
Confidence 445555666666555433332 2333333345666777777777777776652 133221110000
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccC
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGV----SMYNVRIHSLCKLR 265 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~ 265 (402)
......++..... ......-|..++..+-+.+-++.+.++-+..++.--..|. ..|..+.++.+..|
T Consensus 880 -~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 -LREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -GHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -hhhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0001111111100 0112336788888888889998888888877764322222 35666666665543
No 378
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=23.13 E-value=52 Score=19.68 Aligned_cols=12 Identities=25% Similarity=0.611 Sum_probs=5.7
Q ss_pred CHHHHHHHHHHc
Q 041936 160 DYKEVKRVFIEF 171 (402)
Q Consensus 160 ~~~~a~~~~~~~ 171 (402)
+++.|...|.++
T Consensus 35 d~~~A~~~F~~l 46 (59)
T 1oai_A 35 DYTRSAQAFTHL 46 (59)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444444
No 379
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.88 E-value=3e+02 Score=28.71 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=29.5
Q ss_pred HcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041936 157 IAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMD 208 (402)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 208 (402)
..+++..|.+++.++.++ +|+...|..++..+...| |+-...+.+++.
T Consensus 1296 ~~~~~g~~~k~l~k~~~~---k~~~~~~~~~~~~~~~l~-w~h~~~~~~~~~ 1343 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEE---KRTRDHFVELAAINGALG-HEHIRTVINRMM 1343 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHH---TCCHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHcC-CHHHHHHHHhhh
Confidence 567777777777777655 466666766666665554 555555555443
No 380
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.44 E-value=1.6e+02 Score=23.30 Aligned_cols=56 Identities=9% Similarity=0.048 Sum_probs=28.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhc--cCCHHHHHHHHHHHH
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNA-------SSFGALVAGFYK--EEKYEDVNKVLQMME 243 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~--~~~~~~a~~~~~~~~ 243 (402)
+...+..|+.+.+..+++.+.+.|..++. .-.+.|..++.. .|+.+-+..+++.-.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCC
Confidence 33445667777666666666665544332 223334333322 266666655555443
No 381
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=22.39 E-value=2.3e+02 Score=20.58 Aligned_cols=40 Identities=5% Similarity=0.038 Sum_probs=24.0
Q ss_pred HHHHHHHHHHchhhcCCCC---CHHHHHHHHHHHHhcCChhHH
Q 041936 161 YKEVKRVFIEFPKTYGIKP---DLDTYNRVIKAFCESSDSSSA 200 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a 200 (402)
++.++++.+...+..|..+ ++.++...++...+.|-++..
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~ 96 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM 96 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH
Confidence 4556666666655555543 355666666666666666555
No 382
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.87 E-value=66 Score=23.05 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=7.5
Q ss_pred HHhcCCcchHHHHHHH
Q 041936 85 LSEANYFNGISQYLEE 100 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~ 100 (402)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555554444444
No 383
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=21.73 E-value=1.3e+02 Score=19.09 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 041936 338 ETALGFCKESI 348 (402)
Q Consensus 338 ~~a~~~~~~~~ 348 (402)
+.|..++++.+
T Consensus 5 ~dA~~yl~~VK 15 (77)
T 2czy_A 5 EDALTYLDQVK 15 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 384
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.41 E-value=1.4e+02 Score=17.77 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=10.5
Q ss_pred cCCHHHHHHHHHHhHhCCCCC
Q 041936 123 ANMTEHAVRTFKEMDEHKLRH 143 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~~~~~ 143 (402)
.|+.+.|+..+-.|...+..|
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSC
T ss_pred CCCHHHHHHHHHcCcCCCCCC
Confidence 455555555555554433333
No 385
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=21.26 E-value=3.3e+02 Score=23.63 Aligned_cols=64 Identities=8% Similarity=0.128 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCc--chHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 041936 76 LAFSIAINKLSEANYF--NGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHK 140 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 140 (402)
.+|..++..+....++ +++..+++.+. .+..++..+-..++..+.+.-..++..-+.+.|.+.+
T Consensus 24 ~t~~~il~~l~~g~~Ls~eEa~~~~~~i~-~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 24 PSWPQILGRLTDNRDLARGQAAWAMDQIM-TGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp CCHHHHHHHHHTTCCCCTTHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 3688888888777644 67888888888 5666777777777777777778888877777777644
No 386
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=21.02 E-value=3.2e+02 Score=21.72 Aligned_cols=150 Identities=8% Similarity=0.097 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHhhcCC-CCCchHHHHHHHHHHHhcCCHHHHH
Q 041936 54 NPEKILEICRAAALT-PESHLDRLAFSIAINKLSEAN-YFNGISQYLEELKTRP-DLQNERFHAHSIILYGQANMTEHAV 130 (402)
Q Consensus 54 ~~~~al~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~ 130 (402)
..++..++++..... ++-..+...+..++..+...+ .-..+..+|..+-..+ ...+..-+..++..+......++..
T Consensus 89 s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~ 168 (256)
T 2jul_A 89 TKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLK 168 (256)
T ss_dssp CHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHH
Confidence 444555555554332 234456666666666654333 2345667777766332 2334444444554444444556677
Q ss_pred HHHHHhHh--CCCCCCHHHHHHHHHHHHH-cC-----------CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 131 RTFKEMDE--HKLRHSVGAFNALLLALTI-AK-----------DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 131 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~-----------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
.+|+.+-. .| ..+..-+..++..+.. .| ..+.+..+|..+- .. .....++.-++..+.+...
T Consensus 169 ~~F~~~D~d~dG-~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D-~d--~dG~Is~~Ef~~~~~~~~~ 244 (256)
T 2jul_A 169 WAFNLYDINKDG-CITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMD-RN--QDGVVTIDEFLETCQKDEN 244 (256)
T ss_dssp HHHHHTCCSSSS-CBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSC-CS--TTCSBCHHHHHHHHHHCSS
T ss_pred HHHHHhCCCCCC-cCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHC-CC--CCCcEeHHHHHHHHHhCHH
Confidence 77777643 33 4555555555554432 24 3456777887772 22 2234678888888888888
Q ss_pred hhHHHHHHHHH
Q 041936 197 SSSAYSILAEM 207 (402)
Q Consensus 197 ~~~a~~~~~~~ 207 (402)
+-+++..|+.+
T Consensus 245 l~~~l~~~d~~ 255 (256)
T 2jul_A 245 IMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhccc
Confidence 88888888765
No 387
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.73 E-value=1.7e+02 Score=20.73 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=7.8
Q ss_pred HHHcCCHHHHHHHHHH
Q 041936 155 LTIAKDYKEVKRVFIE 170 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~ 170 (402)
.+..|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555555555443
No 388
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.68 E-value=2.6e+02 Score=20.56 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 232 YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
.+.+..+++.+.+.|.-.|...-...+....+.| .....+-.++...|+.+
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 3455566666666665555544455555544433 22445556666666653
No 389
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.19 E-value=6.4e+02 Score=24.97 Aligned_cols=158 Identities=4% Similarity=-0.054 Sum_probs=88.5
Q ss_pred HHHHHHHhccCCH---HHHHHHHHHHHHCC----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041936 220 GALVAGFYKEEKY---EDVNKVLQMMERYG----MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHF 292 (402)
Q Consensus 220 ~~l~~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 292 (402)
..++...|..|+. +.|.+.|+.....+ ++|+. -..+...-.+.|+.++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 3456667777774 46777777765432 45553 3333444456687777777777777652 34445678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHH-ccCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHH
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSG-LSPNSSVYFTMVYFMC-KGGDYETALGFCKESIA---KGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 367 (402)
+.+++...+.+...++++...... +++. .... ++.+.. .....+.|.+++.+=-+ ..+......+..++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888889888888888776543 3332 2222 233333 22234555555544221 122233445666777666
Q ss_pred cCCChHHHHHHHHHHHh
Q 041936 368 GASKVSEAKELIGLVKE 384 (402)
Q Consensus 368 ~~g~~~~a~~~~~~~~~ 384 (402)
..-..++-.+-++...+
T Consensus 843 ~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKK 859 (909)
T ss_dssp TTCCSHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 55444444444444443
No 390
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.02 E-value=69 Score=24.00 Aligned_cols=127 Identities=11% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc
Q 041936 255 NVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKG 334 (402)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 334 (402)
..++.=|...++.++|...++++......|..+....-...=.+....+.+..++..+.. ++-+.......+...+...
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~lle~l 92 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 92 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhC
Q ss_pred C----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 335 G----DYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 335 g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
. |...|..++.++...-+.-+......+-+...+ -.-+.+.+.+....
T Consensus 93 dDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~-~~~~~~~~~l~~a~ 144 (165)
T 2rg8_A 93 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-VDCVQARAALDKAT 144 (165)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTT-CCCHHHHHHHHHHH
T ss_pred hhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhc-cCchHHHHHHHHHH
Done!