BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041937
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 59/80 (73%), Gaps = 3/80 (3%)
Query: 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESD 71
SG W+AK+NK FE ALA+YDKDTPDRW +A+ V G + EEVK+ YE+LV+DIK IES
Sbjct: 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 66
Query: 72 RVPLPDY---AQNDTSNEKR 88
+VP P+Y N ++EKR
Sbjct: 67 KVPFPNYRTTGGNMKTDEKR 86
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEM 60
SG W +N FE AL+ +KDTPDRW+ +A+ V G + EEVK+ YE+
Sbjct: 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67
+ WT ++ KL E AL Y +TP+RW+ IA+ V G ++++ +RY+ LV+ +K+
Sbjct: 4 TPWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKA 57
>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62
WT + KL E AL Y + + D W IA+ V S+E+ RY++LV
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 10 TISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRY 58
+IS + WTA+++ L + Y + +W IIAK G ++ +K R+
Sbjct: 59 SISHTPWTAEEDALLVQKIQEYGR----QWAIIAKFFPGRTDIHIKNRW 103
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVK 55
WT ++ +LFE LA + + RW I+K++G + +VK
Sbjct: 12 WTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVK 47
>pdb|2DIN|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 66
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 25 ENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVP 74
E L K P +W+ IA I+G T+ + ++ YE L+D K+ + D P
Sbjct: 17 EEKLLHLAKLMPTQWRTIAPIIGRTAAQCLE-HYEFLLD--KAAQRDSGP 63
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 10 TISGSSWTAKKNK-LFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSI 68
+ +WT ++++ +F N L + K W +IAK++ G ++ +K R+ + S
Sbjct: 51 AVVKHAWTPEEDETIFRNYLKLGSK-----WSVIAKLIPGRTDNAIKNRWNSSISKRIST 105
Query: 69 ESDR--VPLPDYAQ 80
S+ + LPD ++
Sbjct: 106 NSNHKEILLPDRSK 119
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 18 AKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEE-VKRRYEMLVDDIKS 67
K + F +A ++ KD P Q+ ++ G SEE+ V R L D+++
Sbjct: 537 GKLDPTFASATLLFQKDPPADVQLFQEVPKGQSEEDMVGRPLPHLAADMQA 587
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 18 AKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEE-VKRRYEMLVDDIKS 67
K + F +A ++ KD P Q+ ++ G SEE+ V R L D+++
Sbjct: 537 GKLDPTFASATLLFQKDPPADVQLFQEVPKGQSEEDMVGRPLPHLAADMQA 587
>pdb|1Q1L|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 401
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 46 VGGTSEEEVKRRYEMLVDDIKS 67
+GG EEVK+R+E V+ +KS
Sbjct: 379 LGGDFXEEVKKRFEDYVNHVKS 400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,803,516
Number of Sequences: 62578
Number of extensions: 99774
Number of successful extensions: 238
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 24
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)