BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041937
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1
Length = 100
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPL 75
WTAK+NK FE ALA YD+DTP+RWQ +AK+VGG + EEVKR YE+LV DI SIE+ VP
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPF 73
Query: 76 PDY 78
P+Y
Sbjct: 74 PNY 76
>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1
Length = 97
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESD 71
S S WT +NK+FE ALA+YDKDTPDRW +AK VGG + EEVKR Y++LV+D+ +IE+
Sbjct: 8 SISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETG 67
Query: 72 RVPLPDY 78
RVPLP+Y
Sbjct: 68 RVPLPNY 74
>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1
SV=1
Length = 93
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 59/80 (73%), Gaps = 3/80 (3%)
Query: 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESD 71
SG W+AK+NK FE ALA+YDKDTPDRW +A+ V G + EEVK+ YE+LV+DIK IES
Sbjct: 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 66
Query: 72 RVPLPDY---AQNDTSNEKR 88
+VP P+Y N ++EKR
Sbjct: 67 KVPFPNYRTTGGNMKTDEKR 86
>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1
Length = 101
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPL 75
WT K+NK FE ALA+YD+DTPDRW +A+ VGG + EE KR+Y++LV DI+SIE+ VP
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73
Query: 76 PDYAQNDTSNEKR 88
PDY + T N R
Sbjct: 74 PDY-KTTTGNSNR 85
>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1
Length = 81
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 51/70 (72%)
Query: 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPL 75
WT K+NKLFE ALA YD+DTPDRW +A+ VGG S EEV+R YE+L+ D+ IES R P
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRYPH 71
Query: 76 PDYAQNDTSN 85
P+Y N ++
Sbjct: 72 PNYRSNGNNH 81
>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1
Length = 100
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 53/70 (75%)
Query: 19 KKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPLPDY 78
K+NK+FE ALA+YDKDTPDRWQ +AK VG S EEVKR Y++LV+D+ +IE D VPLP Y
Sbjct: 15 KQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPLPKY 74
Query: 79 AQNDTSNEKR 88
D ++ R
Sbjct: 75 KTVDVGSKSR 84
>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1
Length = 77
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 45/60 (75%)
Query: 19 KKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPLPDY 78
+++K FE ALA +DKDTPDRWQ IA+ VGG S EEVKR YE+L+ D+ IES R P P Y
Sbjct: 14 REDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYPQPRY 73
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus
GN=DIVARICATA PE=2 SV=1
Length = 307
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%)
Query: 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPL 75
WTA +NK FENALA++D++TP+RW+ +A+ V G + +V R+Y+ L DD+ SIE+ VP+
Sbjct: 26 WTAAENKAFENALAVFDENTPNRWERVAERVPGKTVGDVMRQYKELEDDVSSIEAGFVPV 85
Query: 76 PDYA 79
P Y+
Sbjct: 86 PGYS 89
>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1
SV=2
Length = 621
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 10 TISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67
I + WT ++ KL E AL Y +TP+RW+ IA+ V G ++++ RRY+ LV+ +K+
Sbjct: 548 CIDSTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMRRYKELVEMVKA 605
>sp|Q6P2Y3|DNJC2_XENTR DnaJ homolog subfamily C member 2 OS=Xenopus tropicalis GN=dnajc2
PE=2 SV=2
Length = 620
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67
S WT ++ KL E AL Y +TP+RW+ IA+ V G S+++ +RY+ LV+ +K+
Sbjct: 551 SPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRSKKDCMKRYKELVEMVKA 604
>sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2
PE=2 SV=1
Length = 621
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 10 TISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67
I WT ++ KL E AL Y +TP+RW+ IA+ V G ++++ RRY+ LV+ +K+
Sbjct: 548 CIDSIPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMRRYKELVEMVKA 605
>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1
Length = 621
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67
+ WT ++ KL E AL Y +TP+RW+ IA+ V G ++++ +RY+ LV+ +K+
Sbjct: 552 TPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKA 605
>sp|Q4R8H2|DNJC2_MACFA DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2
PE=2 SV=1
Length = 621
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67
+ WT ++ KL E AL Y +TP+RW+ IA+ V G ++++ +RY+ LV+ +K+
Sbjct: 552 TPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKA 605
>sp|Q99543|DNJC2_HUMAN DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1
SV=4
Length = 621
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67
+ WT ++ KL E AL Y +TP+RW+ IA+ V G ++++ +RY+ LV+ +K+
Sbjct: 552 TPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKA 605
>sp|Q6NWJ4|DNJC2_DANRE DnaJ homolog subfamily C member 2 OS=Danio rerio GN=dnajc2 PE=2
SV=1
Length = 618
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67
+ ++WT ++ KL E AL Y T +RW+ I++ V G S+++ +RY+ LV+ IK+
Sbjct: 549 NAAAWTTEEQKLLEQALKTYPVSTAERWERISEAVPGRSKKDCMKRYKELVEMIKA 604
>sp|Q61712|DNJC1_MOUSE DnaJ homolog subfamily C member 1 OS=Mus musculus GN=Dnajc1 PE=1
SV=1
Length = 552
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 15 SWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66
+WT + KL E AL Y K DRW IAK V S+E+ RY++LV+ ++
Sbjct: 494 AWTQSQQKLLELALQQYPKGASDRWDKIAKCVPSKSKEDCIARYKLLVELVQ 545
>sp|Q96KC8|DNJC1_HUMAN DnaJ homolog subfamily C member 1 OS=Homo sapiens GN=DNAJC1 PE=1
SV=1
Length = 554
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66
WT + KL E AL Y + + DRW IA+ V S+E+ RY++LV+ ++
Sbjct: 497 WTQNQQKLLELALQQYPRGSSDRWDKIARCVPSKSKEDCIARYKLLVELVQ 547
>sp|P34454|YMA9_CAEEL Uncharacterized protein F54F2.9 OS=Caenorhabditis elegans
GN=F54F2.9 PE=4 SV=3
Length = 414
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66
W+ + K FE AL Y K T +RW+ I++ +G ++++V R++ L + I+
Sbjct: 357 WSQAEQKAFETALQKYPKGTDERWERISEEIGSKTKKQVMVRFKQLAEMIR 407
>sp|Q3B532|SAHH_PELLD Adenosylhomocysteinase OS=Pelodictyon luteolum (strain DSM 273)
GN=ahcY PE=3 SV=1
Length = 471
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 9 STISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEML 61
S + + A++ LF AIY++D+ +RW +AK + G SEE V R Y+M+
Sbjct: 154 SMLQNAGGNAEERALFGQLKAIYEEDS-NRWHKVAKEMKGVSEETTTGVHRLYQMM 208
>sp|P39964|CEF1_SCHPO Pre-mRNA-splicing factor cdc5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc5 PE=1 SV=1
Length = 757
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 36 PDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPL 75
P +W+ IA IVG T+ + ++ RY+ L+DD+++ E++++ L
Sbjct: 77 PTQWRTIAPIVGRTATQCLE-RYQKLLDDLEAKENEQLGL 115
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 7 RTSTISGS---SWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVK 55
R+ T GS WT+++ +LFE L Y + RW IAK++G + +VK
Sbjct: 110 RSPTKPGSYSLKWTSEEKELFEQGLVKYGR----RWTKIAKLIGSRTVLQVK 157
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVK---RRY-------EMLVDDI 65
WT ++ LFE LA + + RW IA+++G S +VK R Y E V +
Sbjct: 112 WTKEEKNLFEQGLATFGR----RWTSIARLIGSRSVLQVKNYARHYFKNKCKLEGFVKEE 167
Query: 66 KSIESDRVP-LPDY 78
I S ++P L DY
Sbjct: 168 AKIGSLQIPNLQDY 181
>sp|Q5PQQ2|WBP11_RAT WW domain-binding protein 11 OS=Rattus norvegicus GN=Wbp11 PE=2
SV=1
Length = 641
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 1 MEYSGQRTSTISGSSWTAKKNKL---FENALAIYDKDTPDRWQIIAKIVGGTSEEEVKR- 56
ME++ + ++ K+ KL FE L +Y+K+ PD ++ + K+ E E KR
Sbjct: 63 MEFNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKL---EVEYEQKRA 119
Query: 57 ---RYEMLVDDIKSIESDRVPLPDYAQ 80
+Y V + + +E + +PLPD
Sbjct: 120 QLSQYFDAVKNAQHVEVESIPLPDMPH 146
>sp|Q9Y2W2|WBP11_HUMAN WW domain-binding protein 11 OS=Homo sapiens GN=WBP11 PE=1 SV=1
Length = 641
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 1 MEYSGQRTSTISGSSWTAKKNKL---FENALAIYDKDTPDRWQIIAKIVGGTSEEEVKR- 56
ME++ + ++ K+ KL FE L +Y+K+ PD ++ + K+ E E KR
Sbjct: 63 MEFNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKL---EVEYEQKRA 119
Query: 57 ---RYEMLVDDIKSIESDRVPLPDYAQ 80
+Y V + + +E + +PLPD
Sbjct: 120 QLSQYFDAVKNAQHVEVESIPLPDMPH 146
>sp|Q923D5|WBP11_MOUSE WW domain-binding protein 11 OS=Mus musculus GN=Wbp11 PE=1 SV=2
Length = 641
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 1 MEYSGQRTSTISGSSWTAKKNKL---FENALAIYDKDTPDRWQIIAKIVGGTSEEEVKR- 56
ME++ + ++ K+ KL FE L +Y+K+ PD ++ + K+ E E KR
Sbjct: 63 MEFNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKL---EVEYEQKRA 119
Query: 57 ---RYEMLVDDIKSIESDRVPLPDYAQ 80
+Y V + + +E + +PLPD
Sbjct: 120 QLSQYFDAVKNAQHVEVESIPLPDMPH 146
>sp|Q9CF36|MUTS2_LACLA MutS2 protein OS=Lactococcus lactis subsp. lactis (strain IL1403)
GN=mutS2 PE=3 SV=1
Length = 776
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 15 SWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSE------EEVKRRYEMLVDDIKSI 68
S KK ++F+NA ++YD + + I A I SE E + + L +++ +I
Sbjct: 128 SALVKKLEIFDNAGSLYDNASLELMHIRASIKSHQSEIRKIMQEMLTKNLSSLSENVITI 187
Query: 69 ESDRVPLPDYAQN 81
+DR LP A+N
Sbjct: 188 RNDRQVLPVKAEN 200
>sp|Q4WHG0|CEF1_ASPFU Pre-mRNA-splicing factor cef1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cef1 PE=3
SV=1
Length = 792
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 33 KDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPL 75
K P +W+ IA IVG T+ + ++ RY+ L+D+ ++ E+D + L
Sbjct: 74 KLMPTQWRTIAPIVGRTATQCLE-RYQKLLDEAEARENDELGL 115
>sp|A2RJC8|MUTS2_LACLM MutS2 protein OS=Lactococcus lactis subsp. cremoris (strain MG1363)
GN=mutS2 PE=3 SV=1
Length = 776
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 15 SWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSE------EEVKRRYEMLVDDIKSI 68
S KK ++F+NA ++YD + + I A I SE E + + L +++ +I
Sbjct: 128 SGLIKKLEIFDNAGSLYDNASLELMHIRASIKSHQSEIRKIMQEMLTKNLSSLSENVITI 187
Query: 69 ESDRVPLPDYAQN 81
+DR LP A+N
Sbjct: 188 RNDRQVLPVKAEN 200
>sp|C8VBH3|CEF1_EMENI Pre-mRNA-splicing factor cef1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cef1
PE=3 SV=1
Length = 791
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 36 PDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPL 75
P +W+ IA IVG T+ + ++ RY+ L+D+ ++ E+D + L
Sbjct: 77 PTQWRTIAPIVGRTATQCLE-RYQKLLDEAEARENDELGL 115
>sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ADA2 PE=1 SV=1
Length = 434
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 39 WQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPLPDYAQN 81
WQ IA +G +EEVK Y +ES P+PD QN
Sbjct: 85 WQDIADHIGSRGKEEVKEHYLKYY-----LESKYYPIPDITQN 122
>sp|A7SD85|CDC5L_NEMVE Cell division cycle 5-related protein OS=Nematostella vectensis
GN=cdc5l PE=3 SV=1
Length = 805
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 10 TISGSSWTAKKN-KLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSI 68
+I + W+ +++ KL A K P +W+ IA ++G T+ + ++ RYE L+D ++
Sbjct: 57 SIKKTEWSREEDEKLLHLA-----KLMPTQWRTIAPLIGRTAAQCLE-RYEYLLDQAQAK 110
Query: 69 ESDR 72
E D+
Sbjct: 111 EGDK 114
>sp|A4SF77|SAHH_PROVI Adenosylhomocysteinase OS=Prosthecochloris vibrioformis (strain DSM
265) GN=ahcY PE=3 SV=1
Length = 471
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 18 AKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEML 61
A++ LF +IYD+D+ RW +A + G SEE V R Y M+
Sbjct: 163 AEEKALFAQLKSIYDEDS-TRWHKVAADMKGVSEETTTGVHRLYHMM 208
>sp|B9KES4|ATPE_CAMLR ATP synthase epsilon chain OS=Campylobacter lari (strain RM2100 /
D67 / ATCC BAA-1060) GN=atpC PE=3 SV=1
Length = 130
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 46 VGGTSEEEVKRRYEMLVDDIKSIESDRVPLPD-YAQND 82
VGG S+ E+ +R E D IKS+ SD + L +A+ D
Sbjct: 87 VGGNSDSEIAKRLEEAKDLIKSMSSDSIALASTFAKMD 124
>sp|Q6P0D5|WBP11_DANRE WW domain-binding protein 11 OS=Danio rerio GN=wbp11 PE=1 SV=1
Length = 640
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 1 MEYSGQRTSTISGSSWTAKKNKL---FENALAIYDKDTPDRWQIIAKIVGGTSEEEVKR- 56
ME++ + ++ K+ KL FE + +Y+++ P+ ++ + K+ E E KR
Sbjct: 63 MEFNPVQQPLLNEKVLRDKRKKLRETFERIVRLYERENPETYKELRKL---ELEYETKRG 119
Query: 57 RYEMLVDDIK---SIESDRVPLPDYAQNDTS 84
+ + D +K S+E D +PLP+ +S
Sbjct: 120 QLSLYFDSVKNAESVEVDSIPLPEMPHAPSS 150
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVK 55
WT ++ +LFE LA + + RW I+K++G + +VK
Sbjct: 121 WTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVK 156
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 9 STISG---SSWTAKKNKLFENALAIYDKD 34
+TISG SSWT ++ +LF A +YDKD
Sbjct: 143 TTISGATRSSWTKEEERLFVEAYKLYDKD 171
>sp|Q3KFI8|MTND_PSEPF Acireductone dioxygenase OS=Pseudomonas fluorescens (strain
Pf0-1) GN=mtnD PE=3 SV=2
Length = 181
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 37 DRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67
DRWQ AKI G S+EEV Y+ +D + +
Sbjct: 37 DRWQAAAKIQPGASQEEVIGAYKEQIDKLMT 67
>sp|Q02XM1|MUTS2_LACLS MutS2 protein OS=Lactococcus lactis subsp. cremoris (strain SK11)
GN=mutS2 PE=3 SV=1
Length = 776
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 15 SWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSE------EEVKRRYEMLVDDIKSI 68
S KK ++F+NA ++YD + + I + I SE E + + L +++ +I
Sbjct: 128 SGLIKKLEIFDNAGSLYDNASLELMHIRSSIKSHQSEIRKIMQEMLTKNLASLSENVITI 187
Query: 69 ESDRVPLPDYAQN 81
+DR LP A+N
Sbjct: 188 RNDRQVLPVKAEN 200
>sp|P0CO95|CEF1_CRYNB Pre-mRNA-splicing factor CEF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CEF1 PE=3 SV=1
Length = 833
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 33 KDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPL 75
K P +W+ IA IVG T+ + ++ RY+ L+DD ++ +++ + L
Sbjct: 70 KLMPTQWRTIAPIVGRTATQCLE-RYQKLLDDAEARDNEELGL 111
>sp|P0CO94|CEF1_CRYNJ Pre-mRNA-splicing factor CEF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CEF1 PE=3 SV=1
Length = 838
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 33 KDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPL 75
K P +W+ IA IVG T+ + ++ RY+ L+DD ++ +++ + L
Sbjct: 75 KLMPTQWRTIAPIVGRTATQCLE-RYQKLLDDAEARDNEELGL 116
>sp|Q30WL8|SAHH_DESDG Adenosylhomocysteinase OS=Desulfovibrio desulfuricans (strain G20)
GN=ahcY PE=3 SV=1
Length = 479
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 15 SWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEMLVD 63
S+ K+ ++ N +A+ K+ P +W +A V G SEE V R Y M D
Sbjct: 166 SYDNKEFQIVMNRIALSMKNDPGKWTRVAAKVRGVSEETTTGVHRLYHMEKD 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,584,465
Number of Sequences: 539616
Number of extensions: 1246724
Number of successful extensions: 3073
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3035
Number of HSP's gapped (non-prelim): 61
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)