Query 041937
Match_columns 88
No_of_seqs 105 out of 640
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cjj_A Radialis; plant develop 99.9 8.2E-28 2.8E-32 156.0 8.3 75 8-82 3-77 (93)
2 2cqq_A RSGI RUH-037, DNAJ homo 99.9 1.6E-26 5.6E-31 143.7 9.0 71 7-79 2-72 (72)
3 1wgx_A KIAA1903 protein; MYB D 99.8 3.1E-21 1.1E-25 120.5 7.3 59 7-65 2-60 (73)
4 2cqr_A RSGI RUH-043, DNAJ homo 99.8 1.5E-21 5.2E-26 121.6 5.3 57 10-66 15-71 (73)
5 4eef_G F-HB80.4, designed hema 99.8 2.2E-21 7.4E-26 121.4 -0.5 50 11-60 18-67 (74)
6 2yum_A ZZZ3 protein, zinc fing 99.8 3.3E-18 1.1E-22 105.3 8.9 70 7-79 2-73 (75)
7 2din_A Cell division cycle 5-l 99.7 1.7E-17 5.8E-22 100.0 7.6 63 5-72 1-63 (66)
8 1x41_A Transcriptional adaptor 99.7 2.6E-17 8.7E-22 97.9 7.1 53 7-62 2-54 (60)
9 2yus_A SWI/SNF-related matrix- 99.7 2.3E-17 7.8E-22 103.7 4.0 59 11-73 16-75 (79)
10 2elk_A SPCC24B10.08C protein; 99.7 2.3E-16 7.8E-21 93.4 7.6 52 7-61 3-55 (58)
11 2cu7_A KIAA1915 protein; nucle 99.7 5.5E-16 1.9E-20 94.9 9.3 58 5-66 1-58 (72)
12 2d9a_A B-MYB, MYB-related prot 99.6 3.1E-16 1.1E-20 92.7 6.6 53 7-62 2-54 (60)
13 1guu_A C-MYB, MYB proto-oncoge 99.6 5.1E-16 1.7E-20 89.4 6.3 48 12-62 2-49 (52)
14 2dim_A Cell division cycle 5-l 99.6 1.1E-15 3.9E-20 92.9 6.6 55 5-62 1-55 (70)
15 1gvd_A MYB proto-oncogene prot 99.6 1.1E-15 3.6E-20 88.2 5.1 48 12-62 2-49 (52)
16 1w0t_A Telomeric repeat bindin 99.6 8.7E-15 3E-19 84.8 6.7 47 13-62 2-50 (53)
17 3sjm_A Telomeric repeat-bindin 99.5 2.4E-14 8.3E-19 86.5 7.0 49 12-63 10-60 (64)
18 2k9n_A MYB24; R2R3 domain, DNA 99.5 3.4E-14 1.2E-18 92.2 8.0 60 6-69 46-105 (107)
19 1ity_A TRF1; helix-turn-helix, 99.5 4.4E-14 1.5E-18 85.7 7.4 52 9-63 6-59 (69)
20 1gv2_A C-MYB, MYB proto-oncoge 99.5 7E-14 2.4E-18 89.9 6.2 53 6-62 49-101 (105)
21 2llk_A Cyclin-D-binding MYB-li 99.5 8.6E-14 3E-18 86.4 6.2 55 5-64 15-69 (73)
22 3osg_A MYB21; transcription-DN 99.5 9.9E-14 3.4E-18 92.4 6.8 57 6-66 55-111 (126)
23 2ltp_A Nuclear receptor corepr 99.2 4.1E-15 1.4E-19 94.8 0.0 58 4-65 7-64 (89)
24 2eqr_A N-COR1, N-COR, nuclear 99.5 2.7E-13 9.3E-18 80.9 7.8 47 10-60 9-55 (61)
25 1h8a_C AMV V-MYB, MYB transfor 99.4 2.7E-13 9.1E-18 90.1 6.4 54 6-62 20-73 (128)
26 2k9n_A MYB24; R2R3 domain, DNA 99.4 4.1E-13 1.4E-17 87.1 5.9 46 14-62 2-47 (107)
27 1gv2_A C-MYB, MYB proto-oncoge 99.4 3.4E-13 1.2E-17 86.7 5.2 48 12-62 3-50 (105)
28 1h8a_C AMV V-MYB, MYB transfor 99.4 3.2E-13 1.1E-17 89.8 4.8 53 6-62 72-124 (128)
29 3zqc_A MYB3; transcription-DNA 99.3 1.4E-12 4.9E-17 87.1 5.8 56 6-65 47-102 (131)
30 3osg_A MYB21; transcription-DN 99.3 3E-12 1E-16 85.1 6.0 49 10-62 8-56 (126)
31 2ckx_A NGTRF1, telomere bindin 99.3 5.1E-12 1.7E-16 80.0 6.7 47 14-63 1-51 (83)
32 1h89_C C-MYB, MYB proto-oncoge 99.3 2E-12 7E-17 88.5 5.0 53 6-62 103-155 (159)
33 1h89_C C-MYB, MYB proto-oncoge 99.3 3.9E-12 1.4E-16 87.0 6.2 54 6-62 51-104 (159)
34 3zqc_A MYB3; transcription-DNA 99.3 9.5E-13 3.2E-17 88.0 3.0 47 13-62 2-48 (131)
35 2yqk_A Arginine-glutamic acid 99.3 2.2E-11 7.4E-16 73.2 7.0 50 7-60 3-53 (63)
36 2crg_A Metastasis associated p 99.1 1.3E-10 4.4E-15 71.2 6.9 48 9-60 4-52 (70)
37 2aje_A Telomere repeat-binding 99.1 9.4E-11 3.2E-15 77.2 5.7 51 10-63 10-64 (105)
38 2roh_A RTBP1, telomere binding 99.1 1.7E-10 5.7E-15 77.8 6.6 49 12-63 30-82 (122)
39 2juh_A Telomere binding protei 99.1 1.5E-10 5.3E-15 77.8 6.0 53 9-64 13-69 (121)
40 2iw5_B Protein corest, REST co 99.1 3.6E-10 1.2E-14 83.2 8.2 45 12-60 132-176 (235)
41 1x58_A Hypothetical protein 49 99.1 3.3E-10 1.1E-14 68.6 6.4 52 8-63 3-57 (62)
42 1ign_A Protein (RAP1); RAP1,ye 99.0 1.9E-10 6.5E-15 85.2 4.2 56 9-64 4-61 (246)
43 4a69_C Nuclear receptor corepr 99.0 1.2E-09 4E-14 70.3 6.1 45 13-61 43-87 (94)
44 2xag_B REST corepressor 1; ami 98.7 3.4E-08 1.2E-12 78.9 6.4 44 13-60 380-423 (482)
45 3hm5_A DNA methyltransferase 1 98.6 1.6E-07 5.6E-12 60.6 7.2 53 13-69 30-87 (93)
46 1ug2_A 2610100B20RIK gene prod 98.6 3.1E-07 1.1E-11 59.4 8.4 53 14-67 34-86 (95)
47 2lr8_A CAsp8-associated protei 97.8 2.5E-08 8.5E-13 61.4 0.0 51 14-66 15-65 (70)
48 1fex_A TRF2-interacting telome 98.4 7.8E-07 2.7E-11 52.7 5.8 49 13-61 2-56 (59)
49 1ofc_X ISWI protein; nuclear p 98.3 4E-07 1.4E-11 69.0 4.6 49 14-65 111-159 (304)
50 4iej_A DNA methyltransferase 1 97.9 4E-05 1.4E-09 49.4 7.3 52 14-69 31-87 (93)
51 2ebi_A DNA binding protein GT- 97.9 4.8E-05 1.6E-09 47.0 6.5 59 13-71 4-72 (86)
52 2xag_B REST corepressor 1; ami 97.7 4.9E-06 1.7E-10 66.5 0.0 44 13-60 189-232 (482)
53 1irz_A ARR10-B; helix-turn-hel 97.5 0.00061 2.1E-08 41.0 7.6 56 12-68 6-63 (64)
54 4b4c_A Chromodomain-helicase-D 97.3 0.00042 1.4E-08 48.4 6.0 54 9-63 3-58 (211)
55 1ign_A Protein (RAP1); RAP1,ye 97.3 0.00086 2.9E-08 49.6 7.7 27 38-64 173-199 (246)
56 1ofc_X ISWI protein; nuclear p 97.0 0.0025 8.6E-08 48.2 7.6 55 12-66 211-277 (304)
57 2y9y_A Imitation switch protei 96.4 0.01 3.5E-07 46.1 7.4 56 11-66 226-293 (374)
58 2y9y_A Imitation switch protei 95.7 0.013 4.3E-07 45.6 4.8 47 14-63 124-171 (374)
59 4b4c_A Chromodomain-helicase-D 95.1 0.097 3.3E-06 36.2 7.2 51 13-66 134-198 (211)
60 2xb0_X Chromo domain-containin 94.2 0.15 5.2E-06 37.8 6.8 48 14-62 4-53 (270)
61 2ecc_A Homeobox and leucine zi 91.3 1.5 5.2E-05 26.5 8.4 59 7-66 1-59 (76)
62 2cxy_A BAF250B subunit, HBAF25 89.0 0.63 2.2E-05 30.2 4.5 47 37-83 73-124 (125)
63 2xb0_X Chromo domain-containin 88.7 0.33 1.1E-05 36.0 3.3 28 14-44 169-196 (270)
64 2dn0_A Zinc fingers and homeob 85.7 3.7 0.00013 23.9 9.4 64 5-69 4-67 (76)
65 2ys8_A RAB-related GTP-binding 84.8 4.7 0.00016 24.3 6.6 52 9-66 5-56 (90)
66 2hzd_A Transcriptional enhance 81.4 7.3 0.00025 24.1 6.8 54 12-65 5-75 (82)
67 3i4p_A Transcriptional regulat 78.3 5.4 0.00019 26.0 5.5 40 20-63 4-43 (162)
68 1qgp_A Protein (double strande 75.1 9 0.00031 22.5 5.4 46 17-63 12-57 (77)
69 1kkx_A Transcription regulator 73.3 6.9 0.00023 25.3 4.9 31 36-66 69-99 (123)
70 1qbj_A Protein (double-strande 73.0 11 0.00037 22.6 5.4 44 19-63 10-53 (81)
71 2eqy_A RBP2 like, jumonji, at 71.4 13 0.00045 23.8 5.9 36 36-71 63-102 (122)
72 2e19_A Transcription factor 8; 71.4 12 0.0004 21.3 6.8 54 8-62 2-55 (64)
73 2da6_A Hepatocyte nuclear fact 70.6 18 0.0006 23.0 7.1 55 12-66 9-83 (102)
74 2cuf_A FLJ21616 protein; homeo 69.9 15 0.00053 22.1 8.1 59 12-70 10-82 (95)
75 2jxj_A Histone demethylase jar 69.5 3.1 0.00011 25.4 2.4 30 37-66 58-91 (96)
76 2e1c_A Putative HTH-type trans 69.2 14 0.00048 24.4 5.9 40 20-63 28-67 (171)
77 2lm1_A Lysine-specific demethy 67.3 12 0.0004 23.2 4.8 34 37-70 66-103 (107)
78 3a02_A Homeobox protein arista 67.0 13 0.00046 20.3 6.8 52 13-65 3-54 (60)
79 2dbb_A Putative HTH-type trans 67.0 21 0.00072 22.5 6.2 39 21-63 11-49 (151)
80 2li6_A SWI/SNF chromatin-remod 64.7 4.5 0.00016 25.7 2.5 26 37-62 71-96 (116)
81 2cyy_A Putative HTH-type trans 63.7 25 0.00086 22.2 6.1 40 21-64 9-48 (151)
82 1fs1_B SKP1, cyclin A/CDK2-ass 62.7 4.5 0.00015 26.3 2.3 20 40-59 115-134 (141)
83 1i1g_A Transcriptional regulat 62.3 25 0.00084 21.7 5.7 39 22-64 7-45 (141)
84 1ig7_A Homeotic protein MSX-1; 61.4 17 0.00059 19.6 7.7 49 13-62 4-52 (58)
85 3hug_A RNA polymerase sigma fa 61.3 22 0.00074 20.7 5.2 28 38-66 55-82 (92)
86 2cg4_A Regulatory protein ASNC 61.3 25 0.00084 22.2 5.7 40 21-64 10-49 (152)
87 2kk0_A AT-rich interactive dom 60.4 5.3 0.00018 26.5 2.3 38 37-74 86-128 (145)
88 2da3_A Alpha-fetoprotein enhan 60.4 22 0.00074 20.4 5.9 52 14-66 22-73 (80)
89 3mzy_A RNA polymerase sigma-H 59.7 27 0.00092 21.3 5.6 29 37-66 125-153 (164)
90 2p1m_A SKP1-like protein 1A; F 59.1 5.2 0.00018 26.6 2.1 20 40-59 119-138 (160)
91 1or7_A Sigma-24, RNA polymeras 58.9 26 0.00089 22.3 5.5 46 21-67 131-186 (194)
92 2da1_A Alpha-fetoprotein enhan 58.6 22 0.00075 19.9 8.0 54 12-66 10-63 (70)
93 3v7d_A Suppressor of kinetocho 58.2 7.4 0.00025 26.2 2.8 43 17-59 100-146 (169)
94 2dmt_A Homeobox protein BARH-l 57.8 25 0.00086 20.3 7.3 52 14-66 22-73 (80)
95 2cue_A Paired box protein PAX6 57.7 25 0.00086 20.3 8.2 49 12-61 10-58 (80)
96 2o8x_A Probable RNA polymerase 57.5 21 0.0007 19.2 6.5 48 14-67 14-61 (70)
97 2pn6_A ST1022, 150AA long hypo 57.3 25 0.00085 22.0 5.1 39 21-63 5-43 (150)
98 2cra_A Homeobox protein HOX-B1 57.1 24 0.00082 19.8 8.1 54 12-66 10-63 (70)
99 2dmu_A Homeobox protein goosec 56.2 25 0.00084 19.7 8.8 54 12-66 10-63 (70)
100 2p5v_A Transcriptional regulat 56.1 36 0.0012 21.7 5.9 43 16-63 8-50 (162)
101 1axn_A Annexin III; annexin fa 55.6 58 0.002 23.8 8.2 63 5-71 7-78 (323)
102 1bw5_A ISL-1HD, insulin gene e 55.1 25 0.00085 19.5 6.6 50 13-63 7-56 (66)
103 2e1o_A Homeobox protein PRH; D 55.1 26 0.00089 19.7 8.8 53 12-65 10-62 (70)
104 2ly9_A Zinc fingers and homeob 54.7 27 0.00092 19.7 8.8 61 9-70 6-66 (74)
105 2k40_A Homeobox expressed in E 54.6 26 0.00088 19.5 7.1 55 13-68 5-59 (67)
106 2h1k_A IPF-1, pancreatic and d 54.6 25 0.00086 19.3 7.8 54 12-66 6-59 (63)
107 2cfx_A HTH-type transcriptiona 54.2 36 0.0012 21.3 5.5 39 21-63 7-45 (144)
108 1akh_A Protein (mating-type pr 53.9 25 0.00085 19.1 6.0 47 13-60 9-55 (61)
109 1fjl_A Paired protein; DNA-bin 53.8 30 0.001 20.0 7.5 53 12-65 21-73 (81)
110 2ast_A S-phase kinase-associat 53.7 7.6 0.00026 25.5 2.2 20 40-59 120-139 (159)
111 2ia0_A Putative HTH-type trans 52.4 37 0.0013 22.3 5.5 39 21-63 19-57 (171)
112 2jrz_A Histone demethylase jar 51.9 12 0.00041 23.7 2.9 47 24-70 45-99 (117)
113 1fse_A GERE; helix-turn-helix 51.5 27 0.00094 18.9 6.0 47 13-66 9-55 (74)
114 1b72_A Protein (homeobox prote 50.6 38 0.0013 20.3 7.4 55 12-67 37-91 (97)
115 1hbk_A ACBP, acyl-COA binding 50.4 18 0.00061 22.0 3.4 28 38-66 57-84 (89)
116 2p7v_B Sigma-70, RNA polymeras 50.3 30 0.001 18.9 6.0 48 16-67 6-55 (68)
117 1du6_A PBX1, homeobox protein 50.0 30 0.001 18.9 5.8 48 12-60 6-56 (64)
118 2hdd_A Protein (engrailed home 49.5 30 0.001 18.8 7.3 49 13-62 7-55 (61)
119 3epy_A Acyl-COA-binding domain 49.2 19 0.00063 22.1 3.4 28 39-67 58-85 (89)
120 2da4_A Hypothetical protein DK 49.0 36 0.0012 19.6 6.9 55 12-67 11-69 (80)
121 1zq3_P PRD-4, homeotic bicoid 49.0 33 0.0011 19.1 7.1 53 13-66 6-58 (68)
122 2dk8_A DNA-directed RNA polyme 48.0 44 0.0015 20.3 7.4 40 22-63 17-56 (81)
123 2da2_A Alpha-fetoprotein enhan 47.8 35 0.0012 19.0 8.2 53 12-65 10-62 (70)
124 2dms_A Homeobox protein OTX2; 47.6 39 0.0013 19.4 9.9 59 12-71 10-68 (80)
125 1x3u_A Transcriptional regulat 47.4 34 0.0012 18.8 5.2 44 16-66 17-60 (79)
126 1je8_A Nitrate/nitrite respons 47.0 39 0.0013 19.4 5.2 46 14-66 20-65 (82)
127 2cb8_A Acyl-COA-binding protei 46.6 22 0.00074 21.6 3.4 29 38-67 55-83 (87)
128 2djn_A Homeobox protein DLX-5; 46.6 37 0.0013 19.0 7.1 52 12-64 10-61 (70)
129 2cop_A Acyl-coenzyme A binding 46.2 45 0.0016 21.0 5.0 29 38-67 61-89 (109)
130 3fp5_A Acyl-COA binding protei 46.0 20 0.0007 22.7 3.3 24 45-68 67-90 (106)
131 2dmq_A LIM/homeobox protein LH 45.8 41 0.0014 19.2 8.6 50 12-62 10-59 (80)
132 1jgg_A Segmentation protein EV 45.1 36 0.0012 18.4 7.6 49 13-62 5-53 (60)
133 2lbb_A Acyl COA binding protei 44.5 24 0.00083 22.0 3.4 28 38-66 64-91 (96)
134 1st7_A ACBP, acyl-COA-binding 42.4 19 0.00064 21.8 2.6 28 38-66 54-81 (86)
135 1yz8_P Pituitary homeobox 2; D 42.3 44 0.0015 18.6 8.0 56 12-68 6-61 (68)
136 3kw6_A 26S protease regulatory 41.3 30 0.001 19.6 3.3 38 22-59 10-47 (78)
137 3ulq_B Transcriptional regulat 40.9 55 0.0019 19.3 5.6 48 12-66 26-73 (90)
138 2l7z_A Homeobox protein HOX-A1 40.6 49 0.0017 18.7 8.1 56 11-67 9-64 (73)
139 3c57_A Two component transcrip 40.2 56 0.0019 19.2 6.1 47 14-67 26-72 (95)
140 2w25_A Probable transcriptiona 40.0 67 0.0023 20.0 5.5 38 22-63 10-47 (150)
141 3flv_A Acyl-COA-binding domain 39.7 34 0.0011 22.2 3.6 28 38-66 81-108 (119)
142 1k61_A Mating-type protein alp 39.6 45 0.0015 17.9 7.0 48 14-62 3-53 (60)
143 1e3o_C Octamer-binding transcr 39.1 80 0.0027 20.7 7.2 54 12-66 104-157 (160)
144 1c20_A DEAD ringer protein; DN 39.0 44 0.0015 21.3 4.1 35 37-71 74-113 (128)
145 1ku3_A Sigma factor SIGA; heli 38.8 50 0.0017 18.2 6.4 50 15-66 10-59 (73)
146 1tty_A Sigma-A, RNA polymerase 38.7 56 0.0019 18.8 5.8 30 37-67 39-68 (87)
147 2wh5_A Acyl-COA-binding domain 38.2 33 0.0011 21.6 3.4 29 38-67 65-93 (106)
148 1ig6_A MRF-2, modulator recogn 37.9 14 0.0005 22.8 1.6 26 37-62 55-85 (107)
149 2kt0_A Nanog, homeobox protein 37.6 59 0.002 18.7 6.8 52 13-65 26-77 (84)
150 1nk2_P Homeobox protein VND; h 36.7 60 0.002 18.5 7.7 51 12-63 12-62 (77)
151 2rnj_A Response regulator prot 36.5 50 0.0017 19.0 3.8 45 15-66 29-73 (91)
152 1p4w_A RCSB; solution structur 36.4 71 0.0024 19.3 6.0 46 13-65 32-77 (99)
153 2d5v_A Hepatocyte nuclear fact 35.9 89 0.003 20.3 6.6 52 12-64 100-151 (164)
154 2cqu_A Peroxisomal D3,D2-enoyl 35.1 37 0.0013 21.8 3.2 28 38-66 69-96 (116)
155 3eyi_A Z-DNA-binding protein 1 34.6 57 0.0019 19.6 3.8 45 15-62 6-50 (72)
156 3aji_B S6C, proteasome (prosom 33.9 35 0.0012 19.5 2.8 38 22-59 8-45 (83)
157 2vi6_A Homeobox protein nanog; 33.6 60 0.002 17.6 6.9 49 13-62 7-55 (62)
158 2xsd_C POU domain, class 3, tr 33.6 1E+02 0.0035 20.3 6.7 54 13-67 103-156 (164)
159 1puf_A HOX-1.7, homeobox prote 33.1 69 0.0024 18.2 8.6 53 10-63 14-66 (77)
160 3a03_A T-cell leukemia homeobo 32.4 60 0.0021 17.3 7.0 48 14-62 2-49 (56)
161 1pk1_B Sex COMB on midleg CG94 32.4 26 0.00091 21.2 2.1 28 1-28 1-29 (89)
162 1b72_B Protein (PBX1); homeodo 32.0 76 0.0026 18.3 7.1 52 13-65 5-59 (87)
163 3b73_A PHIH1 repressor-like pr 31.9 94 0.0032 19.4 4.9 47 14-63 8-55 (111)
164 2h8r_A Hepatocyte nuclear fact 31.5 1.4E+02 0.0046 21.3 6.0 34 14-47 147-180 (221)
165 1ahd_P Antennapedia protein mu 31.4 71 0.0024 17.7 8.4 55 13-68 6-60 (68)
166 2hi3_A Homeodomain-only protei 31.2 73 0.0025 17.9 9.5 59 10-69 3-62 (73)
167 1b8i_A Ultrabithorax, protein 31.1 79 0.0027 18.2 7.6 53 12-65 23-75 (81)
168 2da5_A Zinc fingers and homeob 30.9 76 0.0026 18.0 7.3 57 13-70 11-67 (75)
169 1au7_A Protein PIT-1, GHF-1; c 30.6 1.1E+02 0.0038 19.7 6.9 51 12-63 90-140 (146)
170 2r5y_A Homeotic protein sex co 30.6 83 0.0028 18.3 7.4 54 12-66 31-84 (88)
171 3cz6_A DNA-binding protein RAP 30.5 44 0.0015 23.2 3.1 21 5-25 106-126 (168)
172 1wi9_A Protein C20ORF116 homol 30.0 17 0.00059 21.9 0.9 37 23-63 11-47 (72)
173 2q1z_A RPOE, ECF SIGE; ECF sig 29.0 14 0.00047 23.5 0.4 45 22-67 127-181 (184)
174 1rp3_A RNA polymerase sigma fa 28.9 1.2E+02 0.0041 19.6 6.7 31 36-67 203-233 (239)
175 2opa_A Probable tautomerase YW 28.9 67 0.0023 16.7 3.3 22 46-67 8-29 (61)
176 2jpc_A SSRB; DNA binding prote 28.7 67 0.0023 16.7 4.0 27 39-66 16-42 (61)
177 1w3w_A Annexin A8; coagulation 28.5 1.4E+02 0.0049 21.8 5.9 53 15-71 20-81 (327)
178 1puf_B PRE-B-cell leukemia tra 28.3 83 0.0028 17.5 7.4 54 13-67 5-61 (73)
179 1ftt_A TTF-1 HD, thyroid trans 28.2 81 0.0028 17.4 7.9 56 13-69 6-61 (68)
180 3nar_A ZHX1, zinc fingers and 28.1 98 0.0034 18.4 7.3 54 12-66 28-81 (96)
181 3a01_A Homeodomain-containing 28.0 98 0.0034 18.3 7.5 54 13-67 21-74 (93)
182 2ecb_A Zinc fingers and homeob 27.6 1E+02 0.0036 18.5 9.1 58 13-71 15-72 (89)
183 1yii_A Annexin A5, annexin V, 27.5 1.7E+02 0.006 21.1 6.3 54 14-71 12-74 (320)
184 2bze_A KIAA0252 protein; human 26.7 1.2E+02 0.0041 19.9 4.8 46 6-64 106-151 (153)
185 3k2a_A Homeobox protein MEIS2; 26.6 89 0.0031 17.4 6.5 52 14-66 3-57 (67)
186 2rq5_A Protein jumonji; develo 26.4 61 0.0021 20.8 3.1 27 37-63 64-95 (121)
187 2zhj_A Annexin A4; zynogen gra 26.0 1.9E+02 0.0065 20.9 7.9 54 14-71 15-77 (322)
188 2dmp_A Zinc fingers and homeob 25.9 1.1E+02 0.0037 18.1 10.6 56 15-71 19-74 (89)
189 2m0c_A Homeobox protein arista 25.7 92 0.0032 17.2 7.1 57 12-69 12-68 (75)
190 1txl_A Metal-binding protein Y 25.6 26 0.0009 25.1 1.3 32 37-68 75-107 (215)
191 2krk_A 26S protease regulatory 25.6 39 0.0013 19.9 1.9 38 22-59 18-55 (86)
192 3d1n_I POU domain, class 6, tr 25.3 1.4E+02 0.0047 19.2 7.2 51 12-63 96-146 (151)
193 1m9i_A Annexin VI; calcium-bin 25.3 2.3E+02 0.0078 23.1 7.0 55 13-71 16-79 (672)
194 2yqf_A Ankyrin-1; death domain 25.2 34 0.0012 21.1 1.7 33 17-54 14-46 (111)
195 1otf_A 4-oxalocrotonate tautom 25.2 81 0.0028 16.4 3.3 22 46-67 8-29 (62)
196 3dxr_B Mitochondrial import in 24.7 38 0.0013 21.0 1.8 60 1-61 3-74 (95)
197 1ucr_A Protein DSVD; dissimila 24.2 1E+02 0.0035 18.7 3.7 27 37-63 22-48 (78)
198 1hm6_A Annexin 1; phospholipid 24.1 2.2E+02 0.0075 21.0 7.0 54 14-71 40-102 (346)
199 1oyi_A Double-stranded RNA-bin 23.3 97 0.0033 18.6 3.5 44 24-72 22-66 (82)
200 1otg_A 5-carboxymethyl-2-hydro 23.2 85 0.0029 19.7 3.4 24 45-68 67-90 (125)
201 2dmn_A Homeobox protein TGIF2L 23.0 1.2E+02 0.0041 17.6 8.3 52 12-64 10-64 (83)
202 1dm5_A Annexin XII E105K mutan 23.0 2.2E+02 0.0074 20.6 6.2 54 14-71 10-72 (315)
203 4ard_A Capsid protein P27; vir 23.0 1.1E+02 0.0036 19.8 3.8 28 35-62 36-64 (116)
204 3e6q_A Putative 5-carboxymethy 22.9 82 0.0028 20.7 3.3 23 45-67 89-111 (146)
205 1wh5_A ZF-HD homeobox family p 22.7 1.2E+02 0.0041 17.5 6.6 46 14-60 22-71 (80)
206 1ttw_B YSCM2; chaperone, type 22.5 65 0.0022 18.2 2.3 38 20-57 14-51 (56)
207 3rkq_A Homeobox protein NKX-2. 22.3 94 0.0032 16.2 6.2 47 13-60 6-52 (58)
208 1mnm_C Protein (MAT alpha-2 tr 21.7 1.3E+02 0.0044 17.4 7.1 49 12-61 30-81 (87)
209 1hfo_A Migration inhibitory fa 21.4 96 0.0033 18.4 3.2 21 46-66 64-84 (113)
210 2hyv_A Annexin A2; calcium-bin 21.3 2.3E+02 0.008 20.3 6.8 52 16-71 2-62 (308)
211 1uiz_A MIF, macrophage migrati 21.2 99 0.0034 18.5 3.3 22 45-66 64-85 (115)
212 1m9i_A Annexin VI; calcium-bin 20.8 3.4E+02 0.012 22.0 7.4 54 14-71 360-422 (672)
213 2doe_A Transcription elongatio 20.7 1.4E+02 0.0049 17.6 6.6 52 23-74 22-80 (83)
214 1oeg_A Apolipoprotein E; siali 20.6 43 0.0015 16.3 1.2 17 51-67 3-19 (26)
215 2v79_A DNA replication protein 20.6 1.7E+02 0.0059 18.5 5.7 46 17-63 31-77 (135)
216 2kgf_A Capsid protein P27; ret 20.4 78 0.0027 21.1 2.8 32 16-47 19-66 (140)
217 1go3_F DNA-directed RNA polyme 20.2 1.7E+02 0.0057 18.2 5.3 42 15-58 46-87 (107)
No 1
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.95 E-value=8.2e-28 Score=156.00 Aligned_cols=75 Identities=56% Similarity=0.982 Sum_probs=61.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCC
Q 041937 8 TSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPLPDYAQND 82 (88)
Q Consensus 8 ~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie~g~v~~P~y~~~~ 82 (88)
+|..+...||.+||++|++||++|+.++++||.+||++|||||++||++||+.|+++|+.||+|.||+|.|...+
T Consensus 3 ~~~~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~~~ 77 (93)
T 2cjj_A 3 STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRTTG 77 (93)
T ss_dssp -----CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-------
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Confidence 345567899999999999999999998889999999999999999999999999999999999999999998875
No 2
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.94 E-value=1.6e-26 Score=143.71 Aligned_cols=71 Identities=21% Similarity=0.417 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 041937 7 RTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPLPDYA 79 (88)
Q Consensus 7 ~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie~g~v~~P~y~ 79 (88)
++|+.+...||.+|+++|++||++||.++++||++||++| |||++||++||+.|++++ .|++|+||+|+|.
T Consensus 2 ~~~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~~ 72 (72)
T 2cqq_A 2 SSGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSSG 72 (72)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCCC
Confidence 4566777899999999999999999999999999999998 899999999999999996 6899999999983
No 3
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.84 E-value=3.1e-21 Score=120.48 Aligned_cols=59 Identities=25% Similarity=0.405 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 7 RTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 7 ~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
.+++++...||.+|+++|++||+.||.++++||++||++|||||++||+.||+.|....
T Consensus 2 ~~~~~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 2 SSGSSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp CCCCCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 34566678999999999999999999999999999999999999999999999985544
No 4
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.84 E-value=1.5e-21 Score=121.56 Aligned_cols=57 Identities=33% Similarity=0.580 Sum_probs=53.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 10 TISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 10 ~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
.++...||.+||++|+.||++|+.+.++||.+||++|||||++||++||+.|++|+.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence 456788999999999999999998888999999999999999999999999999874
No 5
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.80 E-value=2.2e-21 Score=121.42 Aligned_cols=50 Identities=48% Similarity=0.821 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHH
Q 041937 11 ISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEM 60 (88)
Q Consensus 11 ~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~ 60 (88)
.+...||.+|+++||+||++||+++++||++||++|||||++||+.||..
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35668999999999999999999999999999999999999999999963
No 6
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=105.25 Aligned_cols=70 Identities=20% Similarity=0.426 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCC--ChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 041937 7 RTSTISGSSWTAKKNKLFENALAIYDKDT--PDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDRVPLPDYA 79 (88)
Q Consensus 7 ~~~~~s~~~WT~eE~k~Le~al~~~~~~~--~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie~g~v~~P~y~ 79 (88)
+.|......||.|||++|+++|.+|+.+. +.+|.+||++|||||..||++||+.++..+ +..| +++|.+.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~--~k~g-~~~pg~~ 73 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL--TKAG-IPVSGPS 73 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG--STTC-SCCCCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH--HhcC-CCCCCCC
Confidence 45677889999999999999999998644 379999999999999999999997665543 3455 5777663
No 7
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=100.02 Aligned_cols=63 Identities=19% Similarity=0.407 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCC
Q 041937 5 GQRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESDR 72 (88)
Q Consensus 5 ~~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie~g~ 72 (88)
|++.|......||.|||++|..++.+|+. +|.+||+ +||||..||++||..++.....+++|.
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCCC
Confidence 67889999999999999999999999865 7999999 889999999999999999998888874
No 8
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.6e-17 Score=97.93 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 7 RTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 7 ~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
.++.+....||.+||++|.+++.+|+.+ +|.+||++|||||..||++||..++
T Consensus 2 ss~~~~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 2 SSGSSGDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 4567788999999999999999999754 8999999999999999999998754
No 9
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-17 Score=103.67 Aligned_cols=59 Identities=27% Similarity=0.517 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHH-HHHHhhhcCCCC
Q 041937 11 ISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEML-VDDIKSIESDRV 73 (88)
Q Consensus 11 ~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L-~~dv~~ie~g~v 73 (88)
.....||.+|+++|++||.+|+ .+|.+||++|||||..||++||..+ ++|+..++++.-
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~~~ 75 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSG 75 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCCCC
Confidence 3467899999999999999998 3899999999999999999999987 888887777643
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.67 E-value=2.3e-16 Score=93.41 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC-CCCHHHHHHHHHHH
Q 041937 7 RTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG-GTSEEEVKRRYEML 61 (88)
Q Consensus 7 ~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp-gRT~~qc~~ry~~L 61 (88)
.+...-...||.+||++|..++.+|+.+ +|.+||++|| |||+.||++||..+
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~---~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLG---NWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTT---CHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3445557889999999999999999754 8999999999 99999999999864
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=5.5e-16 Score=94.93 Aligned_cols=58 Identities=28% Similarity=0.505 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 5 GQRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 5 ~~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
|-.+|......||.|||.+|..++.+|+. +|..||++|||||..||++||+.++....
T Consensus 1 gs~~p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 1 GSSGSSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp CCCCCSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999999976 79999999999999999999998776553
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=3.1e-16 Score=92.74 Aligned_cols=53 Identities=9% Similarity=0.386 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 7 RTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 7 ~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
.+|......||.|||++|..++.+|+.. +|..||+.|||||..||++||..++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHccCCCHHHHHHHHHHHc
Confidence 4567788999999999999999999753 7999999999999999999998754
No 13
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=5.1e-16 Score=89.39 Aligned_cols=48 Identities=15% Similarity=0.493 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
..+.||.|||.+|..++.+|+.+ +|..||+.|||||..||++||..++
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 35789999999999999999764 7999999999999999999998865
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=92.87 Aligned_cols=55 Identities=24% Similarity=0.515 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 5 GQRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 5 ~~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
|...|......||.+||++|..++.+|+.. +|..||+.|||||..||++||..++
T Consensus 1 gss~~~~k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 1 GSSGSSGKGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp CCSCSCSTTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 344556677899999999999999999753 8999999999999999999998754
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.60 E-value=1.1e-15 Score=88.15 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
..+.||.|||.+|..++.+|+.. +|..||+.|||||..||++||..++
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 35789999999999999999753 7999999999999999999998753
No 16
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.56 E-value=8.7e-15 Score=84.78 Aligned_cols=47 Identities=15% Similarity=0.340 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC--CCCHHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG--GTSEEEVKRRYEMLV 62 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp--gRT~~qc~~ry~~L~ 62 (88)
...||.|||.+|..++.+|+.+ +|..||+.|| |||..||++||..++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999754 8999999999 999999999999875
No 17
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=2.4e-14 Score=86.51 Aligned_cols=49 Identities=16% Similarity=0.407 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC--CCCHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG--GTSEEEVKRRYEMLVD 63 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp--gRT~~qc~~ry~~L~~ 63 (88)
-...||.|||++|..++.+|+.+ +|..||+.+| |||..||++||..|+.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999765 7999999987 9999999999998764
No 18
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.53 E-value=3.4e-14 Score=92.20 Aligned_cols=60 Identities=17% Similarity=0.470 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhc
Q 041937 6 QRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIE 69 (88)
Q Consensus 6 ~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie 69 (88)
+..|....++||.|||.+|..++.+|+. +|..||+.|||||..+|++||..|+..+..++
T Consensus 46 ~L~p~i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 46 YINPALRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HSSSCCTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHcccccccccCHHHHHHHHHHHHHhCc----CHHHHHHHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 3567788899999999999999999975 69999999999999999999999988766543
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.52 E-value=4.4e-14 Score=85.66 Aligned_cols=52 Identities=13% Similarity=0.299 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC--CCCHHHHHHHHHHHHH
Q 041937 9 STISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG--GTSEEEVKRRYEMLVD 63 (88)
Q Consensus 9 ~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp--gRT~~qc~~ry~~L~~ 63 (88)
+......||.|||.+|..++.+|+.+ +|..||+.|| |||..||++||..++.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSS---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC---cHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 34456889999999999999999754 8999999999 9999999999997654
No 20
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.47 E-value=7e-14 Score=89.93 Aligned_cols=53 Identities=21% Similarity=0.512 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 6 QRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 6 ~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
...|....++||.|||.+|..++.+|+. +|..||++|||||..||++||+.++
T Consensus 49 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 49 HLNPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp TTCCCCCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred ccCCcccccCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4567788899999999999999999974 7999999999999999999999765
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.47 E-value=8.6e-14 Score=86.41 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041937 5 GQRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDD 64 (88)
Q Consensus 5 ~~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~d 64 (88)
-...|....++||.|||++|.+++.+|+. +|.+||+.| |||..||++||+.|...
T Consensus 15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~----kW~~IA~~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN----DWATIGAAL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHHHSS----CHHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHCC----CHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 45678889999999999999999999975 499999999 99999999999987543
No 22
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.47 E-value=9.9e-14 Score=92.37 Aligned_cols=57 Identities=26% Similarity=0.582 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 6 QRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 6 ~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
...|....++||.|||++|..++.+|+. +|.+||+.|||||..+|++||..|+..+.
T Consensus 55 ~l~p~~~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 55 YLAPSISHTPWTAEEDALLVQKIQEYGR----QWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp HTSTTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred hcccccccccCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 3456778899999999999999999975 69999999999999999999999988764
No 23
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.20 E-value=4.1e-15 Score=94.77 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=51.0
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 4 SGQRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 4 ~~~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
++..++.+..+.||.+||.+|..++.+|+. +|..||.+|||||..||++||..++..+
T Consensus 7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356677888899999999999999999965 6999999999999999999998766543
No 24
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.7e-13 Score=80.85 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=42.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHH
Q 041937 10 TISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEM 60 (88)
Q Consensus 10 ~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~ 60 (88)
......||.+|+++|+.++.+||. +|.+||++|||||+.||+++|..
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCTTSCHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHH
Confidence 345678999999999999999975 69999999999999999999975
No 25
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.42 E-value=2.7e-13 Score=90.14 Aligned_cols=54 Identities=19% Similarity=0.406 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 6 QRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 6 ~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
...|....+.||.|||++|..++.+|+.. +|..||+.|||||..||++||..++
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 45677788999999999999999999764 7999999999999999999998744
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.40 E-value=4.1e-13 Score=87.06 Aligned_cols=46 Identities=11% Similarity=0.338 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
+.||.|||.+|..++.+|+.. +|..||+.|||||+.||++||..++
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 579999999999999999764 8999999999999999999998744
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.39 E-value=3.4e-13 Score=86.69 Aligned_cols=48 Identities=21% Similarity=0.483 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
..+.||.|||++|..++.+|+.. +|..||+.|||||..||++||..++
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 45789999999999999999764 7999999999999999999998743
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.38 E-value=3.2e-13 Score=89.76 Aligned_cols=53 Identities=23% Similarity=0.513 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 6 QRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 6 ~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
...|....++||.|||.+|..++.+|+. +|..||+.|||||..+|++||+.++
T Consensus 72 ~l~p~~~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 72 HLNPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp TTCSSSCCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred hcccccccccCCHHHHHHHHHHHHHHCc----CHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4567778899999999999999999975 6999999999999999999998764
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.34 E-value=1.4e-12 Score=87.11 Aligned_cols=56 Identities=16% Similarity=0.462 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 6 QRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 6 ~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
+..|....++||.|||.+|..++.+|+. +|..||+.|||||..+|++||..++...
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLGS----KWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSCS----CHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999975 6999999999999999999999876543
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.31 E-value=3e-12 Score=85.13 Aligned_cols=49 Identities=14% Similarity=0.391 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 10 TISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 10 ~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
......||.|||++|..++.+|+. +|..||+.|||||..||++||...+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 445688999999999999999964 6999999999999999999998754
No 31
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.31 E-value=5.1e-12 Score=80.02 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHH----cCCCCHHHHHHHHHHHHH
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKI----VGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~----vpgRT~~qc~~ry~~L~~ 63 (88)
.+||.||+..|..++.+|+.+ +|..|++. ++|||..||++||..|+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 379999999999999999876 89999997 899999999999999875
No 32
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.30 E-value=2e-12 Score=88.46 Aligned_cols=53 Identities=21% Similarity=0.512 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 6 QRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 6 ~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
...|.....+||.+||.+|..++.+|+. +|..||++|||||..+|++||+.|+
T Consensus 103 ~l~p~~~~~~WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 103 HLNPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp TTCTTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTSTTCCHHHHHHHHHTTT
T ss_pred HhCccccccCCChHHHHHHHHHHHHHCC----CHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4567778899999999999999999975 7999999999999999999999764
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.30 E-value=3.9e-12 Score=87.02 Aligned_cols=54 Identities=19% Similarity=0.429 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 6 QRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 6 ~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
...|....++||.+||.+|..++.+|+.. +|..||+.|||||..||++||..++
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 35566778999999999999999999754 7999999999999999999998743
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.29 E-value=9.5e-13 Score=87.98 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
.+.||.|||++|..++.+|+.. +|..||+.|||||..||++||..++
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQ---NWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSC---CGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 3689999999999999999754 7999999999999999999997654
No 35
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.2e-11 Score=73.17 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHH-HcCCCCHHHHHHHHHH
Q 041937 7 RTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAK-IVGGTSEEEVKRRYEM 60 (88)
Q Consensus 7 ~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~-~vpgRT~~qc~~ry~~ 60 (88)
..|......||.+|.++|+++|.+|+++ |.+||+ .||+||..||++.|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHhc
Confidence 4455667899999999999999999885 999999 5999999999999864
No 36
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.15 E-value=1.3e-10 Score=71.16 Aligned_cols=48 Identities=29% Similarity=0.421 Sum_probs=43.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHH-HcCCCCHHHHHHHHHH
Q 041937 9 STISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAK-IVGGTSEEEVKRRYEM 60 (88)
Q Consensus 9 ~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~-~vpgRT~~qc~~ry~~ 60 (88)
.......||.+|.++|+.+|.+|+++ |..||+ .||+||..||++.|..
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHHh
Confidence 34566899999999999999999885 999999 6999999999999974
No 37
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.12 E-value=9.4e-11 Score=77.16 Aligned_cols=51 Identities=12% Similarity=0.237 Sum_probs=45.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHc----CCCCHHHHHHHHHHHHH
Q 041937 10 TISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIV----GGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 10 ~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~v----pgRT~~qc~~ry~~L~~ 63 (88)
.....+||.||+..|..++.+|+.+ +|..|+..+ +|||..+|++||..|+.
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 3356789999999999999999876 899999976 89999999999999885
No 38
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.10 E-value=1.7e-10 Score=77.76 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHc----CCCCHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIV----GGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~v----pgRT~~qc~~ry~~L~~ 63 (88)
....||.||+..|..++.+|+.+ +|..|+... +|||..||++||..|+.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 56789999999999999999876 899999985 89999999999999875
No 39
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.09 E-value=1.5e-10 Score=77.84 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=46.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHc----CCCCHHHHHHHHHHHHHH
Q 041937 9 STISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIV----GGTSEEEVKRRYEMLVDD 64 (88)
Q Consensus 9 ~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~v----pgRT~~qc~~ry~~L~~d 64 (88)
.......||.||+..|..++.+|+.+ +|..||..+ +|||..||++||..|+..
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34466789999999999999999765 899999995 899999999999998864
No 40
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.09 E-value=3.6e-10 Score=83.20 Aligned_cols=45 Identities=24% Similarity=0.462 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEM 60 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~ 60 (88)
....||.+|.++|++||.+|+. +|..||+.|||||..||+++|..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFVN 176 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHH
Confidence 4568999999999999999987 49999999999999999999985
No 41
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.08 E-value=3.3e-10 Score=68.57 Aligned_cols=52 Identities=12% Similarity=0.302 Sum_probs=45.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHH---HcCCCCHHHHHHHHHHHHH
Q 041937 8 TSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAK---IVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 8 ~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~---~vpgRT~~qc~~ry~~L~~ 63 (88)
+.+.....||.||+..|.+.+.+|+. +|..|+. .+++||..+++.+|+.|..
T Consensus 3 ~~~~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 3 SGSSGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCCCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 44557789999999999999999975 6999995 6789999999999999865
No 42
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.01 E-value=1.9e-10 Score=85.20 Aligned_cols=56 Identities=11% Similarity=0.269 Sum_probs=45.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCC--CChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041937 9 STISGSSWTAKKNKLFENALAIYDKD--TPDRWQIIAKIVGGTSEEEVKRRYEMLVDD 64 (88)
Q Consensus 9 ~~~s~~~WT~eE~k~Le~al~~~~~~--~~~rW~kIA~~vpgRT~~qc~~ry~~L~~d 64 (88)
+......||.|||++|..++.+||.. +...|..||++|||||..+|++||..++..
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 45567899999999999999999763 223399999999999999999999986543
No 43
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.97 E-value=1.2e-09 Score=70.26 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEML 61 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L 61 (88)
...||.+|..+|++++.+||+ +|.+||+.||+||..||..+|..-
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK----NFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcCCCCHHHHHHHHhcc
Confidence 478999999999999999987 499999999999999999999653
No 44
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.66 E-value=3.4e-08 Score=78.86 Aligned_cols=44 Identities=25% Similarity=0.471 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEM 60 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~ 60 (88)
...||.+|..+|+.+|.+|+. +|..||+.|++||..||+.+|..
T Consensus 380 ~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCCCHHHHHHHHHH
Confidence 578999999999999999987 49999999999999999999965
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.60 E-value=1.6e-07 Score=60.57 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=47.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHc-----CCCCHHHHHHHHHHHHHHHhhhc
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIV-----GGTSEEEVKRRYEMLVDDIKSIE 69 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~v-----pgRT~~qc~~ry~~L~~dv~~ie 69 (88)
...||.||...|...+.+|.. ||..|+..+ ++||.+++++||..++..+....
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 379999999999999999966 899999999 58999999999999888776544
No 46
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.60 E-value=3.1e-07 Score=59.36 Aligned_cols=53 Identities=17% Similarity=0.385 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
-.||.++|..++.+.++-+. .++.|..||+.+++||++||.+||+.|...+..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 35999999999999988765 467899999999999999999999999887764
No 47
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.81 E-value=2.5e-08 Score=61.44 Aligned_cols=51 Identities=12% Similarity=0.267 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
-.||.|||..+..+.++-++ .+..|..||+.+ +||++||.+||+.|...+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~-s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGP-SSKTFAYLAAKL-DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 46999999999888777655 457999999999 8999999999999887654
No 48
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.39 E-value=7.8e-07 Score=52.66 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC-----CChhHHHHHH-HcCCCCHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKD-----TPDRWQIIAK-IVGGTSEEEVKRRYEML 61 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~-----~~~rW~kIA~-~vpgRT~~qc~~ry~~L 61 (88)
...||.|||++|...|.+|... ++.-|+.+|+ .+|++|-..|++||...
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHH
Confidence 4689999999999999999432 5678999999 89999999999999863
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.34 E-value=4e-07 Score=69.05 Aligned_cols=49 Identities=29% Similarity=0.382 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
+.||..+...|.+|+.+|+.+ .|..||+.|+|||.+||+..|+.+.+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~---~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRD---DIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTT---CHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHH---HHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 469999999999999999875 8999999999999999999888888776
No 50
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.94 E-value=4e-05 Score=49.36 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC-----CCCHHHHHHHHHHHHHHHhhhc
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG-----GTSEEEVKRRYEMLVDDIKSIE 69 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp-----gRT~~qc~~ry~~L~~dv~~ie 69 (88)
..||.||-..|-....+|.. ||-.|+.... .||.+|+++||..++..+....
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999865 8999999984 6999999999999888776543
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.87 E-value=4.8e-05 Score=47.02 Aligned_cols=59 Identities=14% Similarity=0.293 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHHhcC------CCCChhHHHHHHHcC----CCCHHHHHHHHHHHHHHHhhhcCC
Q 041937 13 GSSWTAKKNKLFENALAIYD------KDTPDRWQIIAKIVG----GTSEEEVKRRYEMLVDDIKSIESD 71 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~------~~~~~rW~kIA~~vp----gRT~~qc~~ry~~L~~dv~~ie~g 71 (88)
...||.+|-.+|..+..... ......|+.||+.|. .||++||+.+|+.|...-+.+...
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999998876421 223568999999985 599999999999999988776654
No 52
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.71 E-value=4.9e-06 Score=66.46 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEM 60 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~ 60 (88)
...||.+|.++|+++|.+|++. |.+|+++||+||..+|..+|..
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKd----F~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKT----FHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp ------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCcc----HHHHHHHcCCCCHHHHHHHhcc
Confidence 4589999999999999999884 9999999999999999998753
No 53
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=97.54 E-value=0.00061 Score=41.03 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC--CCCHHHHHHHHHHHHHHHhhh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG--GTSEEEVKRRYEMLVDDIKSI 68 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp--gRT~~qc~~ry~~L~~dv~~i 68 (88)
..-.||.|....|..|+.+.+. ....+.+|.+.|+ |.|..+|+.|-+.+.-.++++
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 3457999999999999999984 3446899998865 899999999999887777643
No 54
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.34 E-value=0.00042 Score=48.36 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=41.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHH--cCCCCHHHHHHHHHHHHH
Q 041937 9 STISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKI--VGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 9 ~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~--vpgRT~~qc~~ry~~L~~ 63 (88)
|......||..|-..|.+|+.+|+. ..+||+.|++. +.+||.++|+.-|..+..
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~-~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGG-PLERLDAIARDAELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSS-GGGCHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCC-chhHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 3345678999999999999999973 24599999976 679999999987766444
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.32 E-value=0.00086 Score=49.61 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=24.8
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041937 38 RWQIIAKIVGGTSEEEVKRRYEMLVDD 64 (88)
Q Consensus 38 rW~kIA~~vpgRT~~qc~~ry~~L~~d 64 (88)
.|..||+.+|++|....++||..++.+
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhh
Confidence 899999999999999999999976654
No 56
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.00 E-value=0.0025 Score=48.22 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=47.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHH------------HcCCCCHHHHHHHHHHHHHHHh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAK------------IVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~------------~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
....||.+||..|...|-+|+-+..+.|++|-. .+-.||+.++..|-..|+.-|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ie 277 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE 277 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 557899999999999999999877789999974 4557999999999998886654
No 57
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.43 E-value=0.01 Score=46.10 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHH------------cCCCCHHHHHHHHHHHHHHHh
Q 041937 11 ISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKI------------VGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 11 ~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~------------vpgRT~~qc~~ry~~L~~dv~ 66 (88)
.....||.+||..|...|-+|+-+..+.|++|-.. +-.||+.++..|-..|+.-|.
T Consensus 226 ~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~Ie 293 (374)
T 2y9y_A 226 NNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLE 293 (374)
T ss_dssp SSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 35678999999999999999998767799999766 567999999999999887764
No 58
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.72 E-value=0.013 Score=45.60 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC-CCCHHHHHHHHHHHHH
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG-GTSEEEVKRRYEMLVD 63 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp-gRT~~qc~~ry~~L~~ 63 (88)
+.||..+=..|.+|+.+|+.+ .-..||+.|. |||.+||+.-++.+..
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~---d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRN---SIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTT---CHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHh---HHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 479999999999999999875 7999999998 9999999955555444
No 59
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.07 E-value=0.097 Score=36.17 Aligned_cols=51 Identities=12% Similarity=0.302 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC------------C--CCHHHHHHHHHHHHHHHh
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG------------G--TSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp------------g--RT~~qc~~ry~~L~~dv~ 66 (88)
...||.+||..|..++.+|+-+ +|+.|-.-.- . .+..++..|...|+.-+.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g---~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~ 198 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYG---SWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS 198 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTT---CHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcC---cHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence 3569999999999999999876 8999987331 2 346789999887776554
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=94.16 E-value=0.15 Score=37.77 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHH--cCCCCHHHHHHHHHHHH
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKI--VGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~--vpgRT~~qc~~ry~~L~ 62 (88)
..||..|-..|.+++.+|+. ...||+.|++. |+.|+...++.-|..|.
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~-~~~R~e~I~~dA~L~~ks~~~i~~~~~~li 53 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGN-LKEILDELIADGTLPVKSFEKYGETYDEMM 53 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSS-CTTCHHHHHHTTSSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 67999999999999999985 24599999865 56799999988887644
No 61
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=91.32 E-value=1.5 Score=26.54 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 7 RTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 7 ~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
++|+++...+|.++-..|+.+....+--+...=+.||+.+ |=|..+|+.=|++-....+
T Consensus 1 ~~~g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t-gLte~qIkvWFqNrR~k~K 59 (76)
T 2ecc_A 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT-GLPRPEIIQWFGDTRYALK 59 (76)
T ss_dssp CCCSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-CcCHHHhhHHhHhhHHHHH
Confidence 4677888999999999999999887765667778899999 7999999887776544433
No 62
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=89.04 E-value=0.63 Score=30.23 Aligned_cols=47 Identities=17% Similarity=0.356 Sum_probs=31.7
Q ss_pred hhHHHHHHHcCCCC----HHHHHHHHHHHHHHHhh-hcCCCCCCCCCCCCCC
Q 041937 37 DRWQIIAKIVGGTS----EEEVKRRYEMLVDDIKS-IESDRVPLPDYAQNDT 83 (88)
Q Consensus 37 ~rW~kIA~~vpgRT----~~qc~~ry~~L~~dv~~-ie~g~v~~P~y~~~~~ 83 (88)
..|..||..|+--+ ...++.+|..++-.... ++.|..|+|.-.+.++
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~~p~~i~~~~~ 124 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGD 124 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHCCCCCCSCC----
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCCChhHhcccC
Confidence 48999999996533 46789999875544443 5788888887665554
No 63
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.74 E-value=0.33 Score=35.95 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAK 44 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~ 44 (88)
-.|+.+||..|...|-+|+.| .|+.|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG---~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYG---SWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCC---cHHHHhc
Confidence 469999999999999999887 8999975
No 64
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.66 E-value=3.7 Score=23.87 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhc
Q 041937 5 GQRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIE 69 (88)
Q Consensus 5 ~~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie 69 (88)
|...|......+|.++-..|+.+....+.-....=..||..+ |-|..+|+.=|++-....++.+
T Consensus 4 ~~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 4 GSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp SCSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHHHhHHHHHhc
Confidence 455556667889999999999998887655555667899999 6999999988877665555433
No 65
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.82 E-value=4.7 Score=24.29 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=35.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 9 STISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 9 ~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
|..+.-.||.++-..+...+.. . .+-.|=..-++-|.++|+..|+.|.....
T Consensus 5 ~s~~~~~~s~~~~~~~~~~~~~-----~-~~y~iLgv~~~as~~eIk~aYr~la~~~H 56 (90)
T 2ys8_A 5 SSGSSASFTKEQADAIRRIRNS-----K-DSWDMLGVKPGASRDEVNKAYRKLAVLLH 56 (90)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTC-----S-SHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CCccccCCCHHHHHHHHHHhcC-----C-CHHHHcCcCCCCCHHHHHHHHHHHHHHHC
Confidence 3444568999998888765432 2 34444444457899999999998876553
No 66
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=81.42 E-value=7.3 Score=24.07 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCC------------ChhHHHHHHHc-----CCCCHHHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDT------------PDRWQIIAKIV-----GGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~------------~~rW~kIA~~v-----pgRT~~qc~~ry~~L~~dv 65 (88)
....|+.+=+..|.+||..||+.. ..|=+-||..+ ..||.+||-.|-+.|....
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 457899999999999999999531 12334455444 2489999999988877654
No 67
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=78.29 E-value=5.4 Score=26.03 Aligned_cols=40 Identities=20% Similarity=0.100 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 20 KNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 20 E~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
-|..+..+|++-+. -.|..||+.+ |-|...|+.|.+.|.+
T Consensus 4 ~d~~il~~L~~~~~---~s~~~la~~l-g~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 4 LDRKILRILQEDST---LAVADLAKKV-GLSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHHHHHHTTCSC---SCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 35667777877543 3799999999 6999999999999876
No 68
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=75.09 E-value=9 Score=22.47 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 17 TAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 17 T~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
|.+.+..+..+|...+.+..-.=..||+.+ |.+...|..|-..|.+
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 345556677888888755455679999999 5888888888777755
No 69
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=73.28 E-value=6.9 Score=25.34 Aligned_cols=31 Identities=10% Similarity=0.281 Sum_probs=24.9
Q ss_pred ChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 36 PDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 36 ~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
...|..||..|+--+...++.+|..++-...
T Consensus 69 ~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 69 TQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 4699999999977668999999987664433
No 70
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=73.00 E-value=11 Score=22.60 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 19 KKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 19 eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
+-+..+..+|...+++..-.=..||+.+ |-|...|..+-..|.+
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3455666888888866556789999999 5888889888877765
No 71
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=71.43 E-value=13 Score=23.76 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=24.9
Q ss_pred ChhHHHHHHHcCCCC----HHHHHHHHHHHHHHHhhhcCC
Q 041937 36 PDRWQIIAKIVGGTS----EEEVKRRYEMLVDDIKSIESD 71 (88)
Q Consensus 36 ~~rW~kIA~~vpgRT----~~qc~~ry~~L~~dv~~ie~g 71 (88)
...|..||..|+--+ ...++.+|..++-......++
T Consensus 63 ~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~ 102 (122)
T 2eqy_A 63 DRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSG 102 (122)
T ss_dssp TTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred CCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 358999999996432 468899998766554444444
No 72
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.42 E-value=12 Score=21.27 Aligned_cols=54 Identities=20% Similarity=0.205 Sum_probs=40.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 8 TSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 8 ~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
+++.+...-+.++-..|+......+.-....=..||+.+ |-|..+|+-=|++-.
T Consensus 2 ~sg~~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~L~e~qVqvWFqNRR 55 (64)
T 2e19_A 2 SSGSSGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSV-NLPLDVVKKWFEKMQ 55 (64)
T ss_dssp CCSCSCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCCCCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcChhhcCcchhccc
Confidence 455666777889999999988776544444556799999 699999887776543
No 73
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.55 E-value=18 Score=22.96 Aligned_cols=55 Identities=7% Similarity=0.105 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC--------------------CCCHHHHHHHHHHHHHHHh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG--------------------GTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp--------------------gRT~~qc~~ry~~L~~dv~ 66 (88)
....||..+...|+.+...-+.-.....+.||+.+. +-|..+|..=|++-....+
T Consensus 9 ~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 9 NRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 456799999999999988877556678899999992 5788888877765443333
No 74
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=69.91 E-value=15 Score=22.06 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC--------------CCCHHHHHHHHHHHHHHHhhhcC
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG--------------GTSEEEVKRRYEMLVDDIKSIES 70 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp--------------gRT~~qc~~ry~~L~~dv~~ie~ 70 (88)
....||.++...|+......+.-....=+.||..+. .-|..+|..=|++-....+....
T Consensus 10 ~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 10 SRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 456799999999999998876555566788999883 17899998888765555554443
No 75
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=69.55 E-value=3.1 Score=25.38 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=21.5
Q ss_pred hhHHHHHHHcCCC---C-HHHHHHHHHHHHHHHh
Q 041937 37 DRWQIIAKIVGGT---S-EEEVKRRYEMLVDDIK 66 (88)
Q Consensus 37 ~rW~kIA~~vpgR---T-~~qc~~ry~~L~~dv~ 66 (88)
..|..||..|+-- + ...++.+|..++-...
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE 91 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYE 91 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 5899999999642 2 5678888977554443
No 76
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=69.20 E-value=14 Score=24.43 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 20 KNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 20 E~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
-+..+..+|...+. -.+..||+.+ |-|...|..|.+.|.+
T Consensus 28 ~d~~IL~~L~~~~~---~s~~eLA~~l-glS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 28 IDKKIIKILQNDGK---APLREISKIT-GLAESTIHERIRKLRE 67 (171)
T ss_dssp HHHHHHHHHHHCTT---CCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34456677777543 3699999999 6999999999998865
No 77
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=67.31 E-value=12 Score=23.17 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=24.4
Q ss_pred hhHHHHHHHcCCCC----HHHHHHHHHHHHHHHhhhcC
Q 041937 37 DRWQIIAKIVGGTS----EEEVKRRYEMLVDDIKSIES 70 (88)
Q Consensus 37 ~rW~kIA~~vpgRT----~~qc~~ry~~L~~dv~~ie~ 70 (88)
..|..||..|+--+ ...++.+|..++-......+
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~~ 103 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTS 103 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHh
Confidence 47999999996433 57889999887665544433
No 78
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=67.05 E-value=13 Score=20.26 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
...+|.++...|+......+.-....=..||..+ |-|..+|+.=|++-....
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~ 54 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI-GLTEARIQVWFQNRRAKW 54 (60)
T ss_dssp --CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CcCHHHHHHHhhhhhhhh
Confidence 4679999999999998886654445567899999 699999988776644433
No 79
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=66.97 E-value=21 Score=22.49 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 21 NKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 21 ~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
+..+..+|...+. -.+..||+.+ |-|..-|.+|.+.|.+
T Consensus 11 d~~il~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 11 DMQLVKILSENSR---LTYRELADIL-NTTRQRIARRIDKLKK 49 (151)
T ss_dssp HHHHHHHHHHCTT---CCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3345567777543 3799999999 6899999999998865
No 80
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=64.75 E-value=4.5 Score=25.71 Aligned_cols=26 Identities=12% Similarity=0.387 Sum_probs=21.6
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 37 DRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 37 ~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
..|..||..|+--+...++.+|..++
T Consensus 71 ~~W~~Va~~lg~~~~~~Lr~~Y~k~L 96 (116)
T 2li6_A 71 QQWSMVAQRLQISDYQQLESIYFRIL 96 (116)
T ss_dssp TCHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred CcHHHHHHHhCCChHHHHHHHHHHHH
Confidence 48999999997666788999998754
No 81
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=63.65 E-value=25 Score=22.22 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041937 21 NKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDD 64 (88)
Q Consensus 21 ~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~d 64 (88)
+..+..+|...+. -.+..||+.+ |-|..-|..|.+.|.+.
T Consensus 9 ~~~il~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 9 DKKIIKILQNDGK---APLREISKIT-GLAESTIHERIRKLRES 48 (151)
T ss_dssp HHHHHHHHHHCTT---CCHHHHHHHH-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 3345567777543 3799999999 69999999999988653
No 82
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=62.68 E-value=4.5 Score=26.30 Aligned_cols=20 Identities=20% Similarity=0.682 Sum_probs=17.5
Q ss_pred HHHHHHcCCCCHHHHHHHHH
Q 041937 40 QIIAKIVGGTSEEEVKRRYE 59 (88)
Q Consensus 40 ~kIA~~vpgRT~~qc~~ry~ 59 (88)
+.||..+.|||++|+|+.|.
T Consensus 115 ~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 115 KTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHcC
Confidence 57999999999999998764
No 83
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=62.29 E-value=25 Score=21.71 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041937 22 KLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDD 64 (88)
Q Consensus 22 k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~d 64 (88)
..+..+|...+. -.+..||+.+ |-|..-|.++.+.|.+.
T Consensus 7 ~~il~~L~~~~~---~~~~ela~~l-g~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 7 KIILEILEKDAR---TPFTEIAKKL-GISETAVRKRVKALEEK 45 (141)
T ss_dssp HHHHHHHHHCTT---CCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 344457766543 3799999999 79999999999988763
No 84
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=61.40 E-value=17 Score=19.55 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
...+|.++...|+.+....+.-+...=..||..+ |-|..+|..=|++-.
T Consensus 4 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR 52 (58)
T 1ig7_A 4 RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL-SLTETQVKIWFQNRR 52 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHhhhhhhHhh
Confidence 3578999999999998887755556678899999 699999987776543
No 85
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=61.33 E-value=22 Score=20.72 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=20.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 38 RWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 38 rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
.-..||+.+ |.|..-|+.|.......++
T Consensus 55 s~~eIA~~l-gis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 55 STAQIATDL-GIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp CHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 578888888 5888888888776555554
No 86
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=61.27 E-value=25 Score=22.23 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041937 21 NKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDD 64 (88)
Q Consensus 21 ~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~d 64 (88)
+..+..+|...+. -.+..||+.+ |-|..-|..|.+.|.+.
T Consensus 10 d~~il~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 10 DRGILEALMGNAR---TAYAELAKQF-GVSPETIHVRVEKMKQA 49 (152)
T ss_dssp HHHHHHHHHHCTT---SCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHHc
Confidence 3455567777543 3799999999 69999999999998763
No 87
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=60.40 E-value=5.3 Score=26.49 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=28.2
Q ss_pred hhHHHHHHHcCCC-----CHHHHHHHHHHHHHHHhhhcCCCCC
Q 041937 37 DRWQIIAKIVGGT-----SEEEVKRRYEMLVDDIKSIESDRVP 74 (88)
Q Consensus 37 ~rW~kIA~~vpgR-----T~~qc~~ry~~L~~dv~~ie~g~v~ 74 (88)
..|..||..|+-- ....++.+|..++-.......|..+
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~ 128 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSN 128 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCC
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5899999999642 2568899999877666666677544
No 88
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=60.35 E-value=22 Score=20.38 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
..+|.++...|+.+....+.-....=..||+.+ |-|..+|+.=|++-....+
T Consensus 22 t~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~k 73 (80)
T 2da3_A 22 TTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV-GLKKRVVQVWFQNTRARER 73 (80)
T ss_dssp SSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhHHHhHHHHHhHh
Confidence 458999999999998877654555567899999 6999999887776554444
No 89
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=59.73 E-value=27 Score=21.29 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=22.3
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 37 DRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 37 ~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
-....||+.+ |.|...|+.+.......++
T Consensus 125 ~s~~EIA~~l-gis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 125 YSYREIATIL-SKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp CCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3688999999 6888889888876555554
No 90
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=59.14 E-value=5.2 Score=26.56 Aligned_cols=20 Identities=25% Similarity=0.649 Sum_probs=17.5
Q ss_pred HHHHHHcCCCCHHHHHHHHH
Q 041937 40 QIIAKIVGGTSEEEVKRRYE 59 (88)
Q Consensus 40 ~kIA~~vpgRT~~qc~~ry~ 59 (88)
..||.++.|||+++||+.|.
T Consensus 119 ~~vA~~ikgkt~eeir~~f~ 138 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTFN 138 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHcC
Confidence 57899999999999998764
No 91
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=58.88 E-value=26 Score=22.28 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCC----------CChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 21 NKLFENALAIYDKD----------TPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 21 ~k~Le~al~~~~~~----------~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
...|..+|.+.|+. ..-....||+.+ |-|...|+.+.......++.
T Consensus 131 ~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 131 RQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 34566666665421 234688999999 68999999988876666653
No 92
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=58.60 E-value=22 Score=19.90 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
....+|.++...|+.+....+.-....=..||..+ |-|..+|..=|++-....+
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~k 63 (70)
T 2da1_A 10 PRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS-GLPQKVIKHWFRNTLFKER 63 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh-CCCHHHHHHHhhhhhHHHh
Confidence 45679999999999998776654555678899999 6999999887776544443
No 93
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=58.16 E-value=7.4 Score=26.18 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhcCCCC----ChhHHHHHHHcCCCCHHHHHHHHH
Q 041937 17 TAKKNKLFENALAIYDKDT----PDRWQIIAKIVGGTSEEEVKRRYE 59 (88)
Q Consensus 17 T~eE~k~Le~al~~~~~~~----~~rW~kIA~~vpgRT~~qc~~ry~ 59 (88)
.-+.+.+|+-.++..--+. .--=..||..+.|||++|+|+.|.
T Consensus 100 ~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 100 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 3345566665555432221 112467899999999999999775
No 94
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.84 E-value=25 Score=20.33 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
..+|.++...|+.+....+.-....=..||..+ |-|..+|+.=|++-....+
T Consensus 22 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k~k 73 (80)
T 2dmt_A 22 TVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL-GLSQLQVKTWYQNRRMKWK 73 (80)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCHHHeeeccHHHHHHhh
Confidence 459999999999998887655555668899999 6999999887776544443
No 95
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=57.72 E-value=25 Score=20.32 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEML 61 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L 61 (88)
....+|.++...|+......+.-....=..||..+ |-|..+|+.=|++-
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNR 58 (80)
T 2cue_A 10 NRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI-DLPEARIQVWFSNR 58 (80)
T ss_dssp CCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CCCHHHhhHHHHHH
Confidence 55679999999999998876654555677899999 69999997766543
No 96
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.45 E-value=21 Score=19.20 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
...++.|..+|.-. |-.+ -.+..||+.+ |-|...|+.+.......++.
T Consensus 14 ~~L~~~~r~il~l~---~~~g--~s~~eIA~~l-gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALLLT---QLLG--LSYADAAAVC-GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHHHH---HTSC--CCHHHHHHHH-TSCHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHH---HHcC--CCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 34677777766432 2222 3699999999 69999999988877766653
No 97
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=57.25 E-value=25 Score=22.05 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 21 NKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 21 ~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
+..+..+|...+ .-.+..||+.+ |-|...|..|.+.|.+
T Consensus 5 ~~~il~~L~~~~---~~~~~ela~~l-g~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 5 DLRILKILQYNA---KYSLDEIAREI-RIPKATLSYRIKKLEK 43 (150)
T ss_dssp HHHHHHHHTTCT---TSCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344556676644 34799999999 6999999999998866
No 98
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=57.10 E-value=24 Score=19.85 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
....+|.++...|+.+....+.-....=..||..+ |-|..+|..=|++-....+
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR~k~k 63 (70)
T 2cra_A 10 KRIPYSKGQLRELEREYAANKFITKDKRRKISAAT-SLSERQITIWFQNRRVKEK 63 (70)
T ss_dssp SCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHHHTTT
T ss_pred CCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CCCHHHhhHhhHhHHHHhc
Confidence 45679999999999998887655556678899999 6999999887776544433
No 99
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.16 E-value=25 Score=19.73 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
....+|.++...|+.+....+.-....=..||..+ |-|..+|..=|++-....+
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~r 63 (70)
T 2dmu_A 10 HRTIFTDEQLEALENLFQETKYPDVGTREQLARKV-HLREEKVEVWFKNRRAKWR 63 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CCCHHHeehcccccccccc
Confidence 45679999999999999887755556678899999 6999999887766444333
No 100
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=56.05 E-value=36 Score=21.71 Aligned_cols=43 Identities=16% Similarity=0.042 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 16 WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
-+.-+. .+..+|...+. -.+..||+.+ |-|..-|.+|.+.|.+
T Consensus 8 ld~~~~-~il~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 8 LDKTDI-KILQVLQENGR---LTNVELSERV-ALSPSPCLRRLKQLED 50 (162)
T ss_dssp CCHHHH-HHHHHHHHCTT---CCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344444 45557777543 3799999999 6999999999998865
No 101
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=55.65 E-value=58 Score=23.82 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCCHHHHH-HHHHHHHhcCCCCChhHHHHHHHcCCCCHHH---HHHHHHH-----HHHHHhhhcCC
Q 041937 5 GQRTSTISGSSWTAKKNK-LFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEM-----LVDDIKSIESD 71 (88)
Q Consensus 5 ~~~~~~~s~~~WT~eE~k-~Le~al~~~~~~~~~rW~kIA~~vpgRT~~q---c~~ry~~-----L~~dv~~ie~g 71 (88)
|....-.....+++++|. .|.+|+.-++.+ =..|-+.+.+||..| ++..|+. |..+|+..=+|
T Consensus 7 ~~~~ti~~~~~f~~~~Da~~L~kA~kG~Gtd----e~~li~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG 78 (323)
T 1axn_A 7 GHRGTVRDYPDFSPSVDAEAIQKAIRGIGTD----EKMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSG 78 (323)
T ss_dssp CSSCSCCCCTTCCHHHHHHHHHHHHSSSSCC----HHHHHHHHTTSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCH
T ss_pred CCCCcccCCCCCCHHHHHHHHHHHhcCCCCC----HHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCc
Confidence 333333333458887776 777888765432 357777899999977 5777775 66777754444
No 102
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=55.15 E-value=25 Score=19.47 Aligned_cols=50 Identities=8% Similarity=0.054 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
...+|.++...|+.+....+.-+...=..||..+ |-|..+|..=|++-..
T Consensus 7 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~ 56 (66)
T 1bw5_A 7 RTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT-GLSPRVIRVWFQNKRC 56 (66)
T ss_dssp CCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHHHHHhHHHHH
Confidence 4679999999999999887755555667899999 6999999877765443
No 103
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=55.14 E-value=26 Score=19.68 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
....+|.++...|+......+.-....=..||..+ |-|..+|..=|++-....
T Consensus 10 ~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~ 62 (70)
T 2e1o_A 10 GQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML-QLSERQVKTWFQNRRAKW 62 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CCCHHHhhHhhHhhHhhc
Confidence 45679999999999998887655556678899999 699999988776644433
No 104
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=54.70 E-value=27 Score=19.73 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=45.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcC
Q 041937 9 STISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIES 70 (88)
Q Consensus 9 ~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie~ 70 (88)
+..+...+|.++-..|+......+.-....=..||..+ |-+..+|+.=|+.-....++.+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT-GLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CcCHHHeeeCChhHhHHHHhhCc
Confidence 44566789999999999998876543444556789888 69999998888876666555444
No 105
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=54.59 E-value=26 Score=19.47 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhh
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSI 68 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~i 68 (88)
...+|.++...|+......+.-+...=..||+.+ |-|..+|..=|++-....+..
T Consensus 5 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 5 RTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL-NLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp SCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhhHhhHhHHHHHhHh
Confidence 4679999999999999887655556678899999 699999998887655544433
No 106
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=54.55 E-value=25 Score=19.32 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
....+|.++...|+.+....+.-....=..||..+ |-|..+|+.=|++-....+
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~k 59 (63)
T 2h1k_A 6 TRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML-NLTERHIKIWFQNRRMKWK 59 (63)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcCHHHhhHHHHhhhhhhh
Confidence 45679999999999998877654555668899999 6999999877766444433
No 107
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=54.18 E-value=36 Score=21.32 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 21 NKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 21 ~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
+..+..+|...+. -....||+.+ |-|...|.+|.+.|.+
T Consensus 7 d~~il~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 7 DLNIIEELKKDSR---LSMRELGRKI-KLSPPSVTERVRQLES 45 (144)
T ss_dssp HHHHHHHHHHCSC---CCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4455567777543 3699999999 6899999999998865
No 108
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=53.89 E-value=25 Score=19.07 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEM 60 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~ 60 (88)
...+|.++...|+......+.-+...=..||..+ |-|..+|..=|++
T Consensus 9 Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqN 55 (61)
T 1akh_A 9 KSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC-GITPLQVRVWFIN 55 (61)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 4578999999999999887765566678899999 6999998876654
No 109
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=53.78 E-value=30 Score=19.98 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
....+|.++...|+......+.-....=..||..+ |-|..+|..=|++-....
T Consensus 21 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~ 73 (81)
T 1fjl_A 21 SRTTFSASQLDELERAFERTQYPDIYTREELAQRT-NLTEARIQVWFQNRRARL 73 (81)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHhhhh
Confidence 34569999999999998887654555667899999 699999988776544433
No 110
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=53.70 E-value=7.6 Score=25.53 Aligned_cols=20 Identities=20% Similarity=0.682 Sum_probs=17.3
Q ss_pred HHHHHHcCCCCHHHHHHHHH
Q 041937 40 QIIAKIVGGTSEEEVKRRYE 59 (88)
Q Consensus 40 ~kIA~~vpgRT~~qc~~ry~ 59 (88)
..||.++-|||+++||+.|.
T Consensus 120 ~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 120 KTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHSSCCHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHcC
Confidence 46899999999999998765
No 111
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=52.37 E-value=37 Score=22.29 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 21 NKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 21 ~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
+..+..+|...+. -.+..||+.+ |-|..-|.+|.+.|.+
T Consensus 19 d~~IL~~L~~~~~---~s~~eLA~~l-glS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 19 DRNILRLLKKDAR---LTISELSEQL-KKPESTIHFRIKKLQE 57 (171)
T ss_dssp HHHHHHHHHHCTT---CCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3455667776543 3699999999 6999999999998865
No 112
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=51.91 E-value=12 Score=23.74 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=28.9
Q ss_pred HHHHHHhcCCC----CChhHHHHHHHcCCCC----HHHHHHHHHHHHHHHhhhcC
Q 041937 24 FENALAIYDKD----TPDRWQIIAKIVGGTS----EEEVKRRYEMLVDDIKSIES 70 (88)
Q Consensus 24 Le~al~~~~~~----~~~rW~kIA~~vpgRT----~~qc~~ry~~L~~dv~~ie~ 70 (88)
|-.++...+.- ....|..||..|+--+ ...++.+|..++-.......
T Consensus 45 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~~~ 99 (117)
T 2jrz_A 45 LSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQS 99 (117)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 44445554421 2358999999996433 56789999875544433333
No 113
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=51.50 E-value=27 Score=18.88 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
....|..|.++|.- +.. + ..-..||+.+ |-|..-|..|...+...+.
T Consensus 9 ~~~L~~~e~~il~~-~~~-g----~s~~eIA~~l-~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFEL-LVQ-D----KTTKEIASEL-FISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHH-HTT-T----CCHHHHHHHH-TSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH-HHc-C----CCHHHHHHHH-CCCHHHHHHHHHHHHHHHC
Confidence 45689999888866 311 1 2578999999 6899999999888777664
No 114
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=50.56 E-value=38 Score=20.28 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
....+|.++...|+.+....+.-....=..||..+ |-|..+|+.=|++-....++
T Consensus 37 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR~k~kk 91 (97)
T 1b72_A 37 LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL-ELNETQVKIWFQNRRMKQKK 91 (97)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CCCHHHhHHHHHHHhHHHhH
Confidence 35679999999999998876654455567899999 69999998877664444433
No 115
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=50.40 E-value=18 Score=22.02 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=22.2
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 38 RWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 38 rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
+|..=. .+.|.|.++.+.+|..+++.+.
T Consensus 57 Kw~AW~-~l~gms~eeA~~~YI~~v~~l~ 84 (89)
T 1hbk_A 57 KYEAWK-SVENLNREDAQKRYVDIVSEIF 84 (89)
T ss_dssp HHHHHH-HTTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHc
Confidence 455544 4589999999999999998874
No 116
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=50.27 E-value=30 Score=18.90 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhcCC--CCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 16 WTAKKNKLFENALAIYDK--DTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 16 WT~eE~k~Le~al~~~~~--~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
=++.|...| ...|+- ...-.+..||+.+ |-|..-|+.+.......++.
T Consensus 6 L~~~er~il---~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 6 LTAREAKVL---RMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCHHHHHHH---HHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGGS
T ss_pred CCHHHHHHH---HHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 355666666 333411 1234699999999 69999999999887777763
No 117
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=49.98 E-value=30 Score=18.93 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHH---HhcCCCCChhHHHHHHHcCCCCHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENAL---AIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEM 60 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al---~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~ 60 (88)
....+|.++...|+..+ ...+.-+...=..||..+ |-|..+|..=|+.
T Consensus 6 ~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-~L~~~qV~~WFqN 56 (64)
T 1du6_A 6 EGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC-GITVSQVSNWFGN 56 (64)
T ss_dssp CCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 45678999999999999 444443455667899998 6999999876654
No 118
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=49.47 E-value=30 Score=18.79 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
...+|.++...|+.+....+.-+...=..||..+ |-|..+|..=|++-.
T Consensus 7 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR 55 (61)
T 2hdd_A 7 RTAFSSEQLARLKREFNENRYLTERRRQQLSSEL-GLNEAQIKIWFKNKR 55 (61)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHhhhhc
Confidence 4678999999999998887655556678899999 699999987666533
No 119
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=49.25 E-value=19 Score=22.08 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=22.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 39 WQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 39 W~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
|..=. .+.|.|.++++.+|..+++.+..
T Consensus 58 w~AW~-~l~g~s~eeA~~~Yi~~v~~l~~ 85 (89)
T 3epy_A 58 WEAWN-LKKGLSTEDATSAYISKAKELIE 85 (89)
T ss_dssp HHHHH-TTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhhCCCHHHHHHHHHHHHHHHhh
Confidence 44433 37899999999999999988764
No 120
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.99 E-value=36 Score=19.55 Aligned_cols=55 Identities=5% Similarity=-0.004 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 12 SGSSWTAKKNKLFENALAIY----DKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~----~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
....+|.++-..|+...... +.-....=..||..+ |-|..+|+.=|++-....+.
T Consensus 11 ~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l-gL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 11 DRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL-NVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp SSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh-CCCHHHhhHhHHHHHHHHhh
Confidence 34568999999999998876 432334567889999 69999999888775555443
No 121
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=48.98 E-value=33 Score=19.13 Aligned_cols=53 Identities=13% Similarity=0.054 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
...+|.++...|+.+....+.-....=..||..+ |-|..+|..=|++-....+
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNRR~k~k 58 (68)
T 1zq3_P 6 RTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL-ALGTAQVKIWFKNRRRRHK 58 (68)
T ss_dssp SCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CcCHHHhhHhhHHHHHHHH
Confidence 4679999999999998887655566778899999 6999999877765444333
No 122
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=47.97 E-value=44 Score=20.25 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 22 KLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 22 k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
..+...+..||.+..+ +.+...+|+-+.++...--+.|+.
T Consensus 17 ~~IL~l~~~~P~GItd--~~L~~~~p~~~~~~r~~aIN~LL~ 56 (81)
T 2dk8_A 17 NRIIELCHQFPHGITD--QVIQNEMPHIEAQQRAVAINRLLS 56 (81)
T ss_dssp HHHHHHHHHCSSCEEH--HHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCH--HHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3577788999987543 569999999999999888887776
No 123
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=47.76 E-value=35 Score=19.01 Aligned_cols=53 Identities=6% Similarity=0.154 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
....+|.++...|+.+....+.-....=..||..+ |-|..+|+.=|++-....
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~ 62 (70)
T 2da2_A 10 SRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL-NLPTRVIVVWFQNARQKA 62 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCHHHhHHhhHhhhHHH
Confidence 45679999999999998887655556678899999 699999988776644433
No 124
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.58 E-value=39 Score=19.44 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCC
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESD 71 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie~g 71 (88)
....+|.++...|+.+....+.-....=..||..+ |-|..+|+.=|++-....+..+..
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 10 ERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI-NLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHhhhhhHHHhHHhhHHHHc
Confidence 45679999999999998887655556678899999 699999998887766555555443
No 125
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=47.42 E-value=34 Score=18.82 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 16 WTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 16 WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
.|..|..+|.- + + . .-.-..||+.+ |-|..-|+.|...+...++
T Consensus 17 L~~~e~~vl~l-~--~-~--g~s~~eIA~~l-~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-V--V-A--GLPNKSIAYDL-DISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-H--T-T--TCCHHHHHHHT-TSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-H--H-c--CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 45666666644 2 2 1 12578999999 6899999998888777665
No 126
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=46.96 E-value=39 Score=19.35 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
...|..|.++|.- + ..+ -.-..||+.+ |-|..-|+.|...+...++
T Consensus 20 ~~Lt~~e~~vl~l-~-~~g----~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKL-I-AQG----LPNKMIARRL-DITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHH-H-TTT----CCHHHHHHHH-TSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHH-H-HcC----CCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 4588888888865 3 111 2578999999 6999999999888777664
No 127
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=46.63 E-value=22 Score=21.59 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=22.4
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 38 RWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 38 rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
+|..=. .+.|.|.++.+.+|..+++.+..
T Consensus 55 Kw~AW~-~l~gms~eeA~~~Yi~~v~~l~~ 83 (87)
T 2cb8_A 55 KWDAWN-ELKGTSKEDAMKAYINKVEELKK 83 (87)
T ss_dssp HHHHHH-TTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence 344433 35899999999999999988753
No 128
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.56 E-value=37 Score=18.98 Aligned_cols=52 Identities=8% Similarity=0.053 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDD 64 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~d 64 (88)
....+|.++...|+.+....+.-....=..||..+ |-|..+|+.=|++-...
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k 61 (70)
T 2djn_A 10 PRTIYSSFQLAALQRRFQKTQYLALPERAELAASL-GLTQTQVKIWFQNKRSK 61 (70)
T ss_dssp SSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHS-SCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHhhh
Confidence 45679999999999998877654555567899988 69999998877664443
No 129
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.17 E-value=45 Score=21.04 Aligned_cols=29 Identities=17% Similarity=0.499 Sum_probs=23.3
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 38 RWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 38 rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
+|..=. .+.|.|.++.+.+|..+++.+..
T Consensus 61 Kw~AW~-~l~gms~eeAm~~YI~lv~~l~~ 89 (109)
T 2cop_A 61 KWEAWK-ALGDSSPSQAMQEYIAVVKKLDP 89 (109)
T ss_dssp HHHHHH-SCTTCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHhh
Confidence 455544 46899999999999999998863
No 130
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=45.99 E-value=20 Score=22.71 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=20.7
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhhh
Q 041937 45 IVGGTSEEEVKRRYEMLVDDIKSI 68 (88)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~i 68 (88)
.++|.|.++++.+|..+++.+...
T Consensus 67 ~l~gmS~eeA~~~YI~~v~~l~~~ 90 (106)
T 3fp5_A 67 SVEGTSKEVAYQKYVEKLLEILKK 90 (106)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999888654
No 131
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.83 E-value=41 Score=19.23 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
....+|.++...|+......+.-....=..||..+ |-|..+|+.=|++-.
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR 59 (80)
T 2dmq_A 10 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT-GLTKRVLQVWFQNAR 59 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHhhHccHHHH
Confidence 45679999999999998887755566678999999 699999987776533
No 132
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=45.08 E-value=36 Score=18.39 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
...+|.++...|+.+....+.-+...=..||..+ |-|..+|..=|++-.
T Consensus 5 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR 53 (60)
T 1jgg_A 5 RTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL-NLPESTIKVWFQNRR 53 (60)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHhhHHHH
Confidence 3578999999999998887655556678899999 699999987776533
No 133
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=44.54 E-value=24 Score=21.99 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=22.3
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 38 RWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 38 rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
+|..=. .+.|.|.++.+.+|..+++.+.
T Consensus 64 Kw~AW~-~l~gmS~eeAm~~YI~lv~~l~ 91 (96)
T 2lbb_A 64 KWEAWN-ALRGMSTESAKEAYVKLLDTLA 91 (96)
T ss_dssp HHHHHH-HTTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHh
Confidence 455554 3589999999999999998875
No 134
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=42.44 E-value=19 Score=21.77 Aligned_cols=28 Identities=29% Similarity=0.635 Sum_probs=22.1
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 38 RWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 38 rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
+|..=. .+.|.|.++.+.+|..+++.+.
T Consensus 54 Kw~AW~-~l~gms~eeA~~~YI~~v~~l~ 81 (86)
T 1st7_A 54 KWEAWE-NLKGKSQEDAEKEYIALVDQLI 81 (86)
T ss_dssp HHHHHH-TTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHh
Confidence 354443 3589999999999999998875
No 135
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=42.29 E-value=44 Score=18.56 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSI 68 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~i 68 (88)
....+|.++...|+......+.-+...=..||..+ |-|..+|..=|++-....+..
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 6 QRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT-NLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT-TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHhHHHHHH
Confidence 35679999999999998876654445567899999 699999988777654444433
No 136
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=41.33 E-value=30 Score=19.58 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHH
Q 041937 22 KLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYE 59 (88)
Q Consensus 22 k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~ 59 (88)
++|...+.+++....-.|..||+.-.|=|.-|+..-.+
T Consensus 10 ~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 10 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp HHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 46666777776544557999999999999999877554
No 137
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.93 E-value=55 Score=19.31 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
....-|..|..+|.-... +. .-..||..+ |-|..-|+.|...+...+.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L-~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF----TNQEIADAL-HLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC----CHHHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHc--CC----CHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 445688888888865442 22 478999999 6999999999888776653
No 138
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=40.56 E-value=49 Score=18.69 Aligned_cols=56 Identities=20% Similarity=0.095 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 11 ISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 11 ~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
-....+|.++...|+.+....+.-....=..||..+ |-|..+|+.=|++-....++
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR~k~kk 64 (73)
T 2l7z_A 9 KKRVPYTKVQLKELEREYATNKFITKDKRRRISATT-NLSERQVTIWFQNRRVKEKK 64 (73)
T ss_dssp CCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH-TSCSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHH-CCCHHHHHHHHHHHhHHHHH
Confidence 345679999999999998887655556678899999 68999998877765554443
No 139
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=40.24 E-value=56 Score=19.20 Aligned_cols=47 Identities=19% Similarity=0.072 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
...|..|.++|.-. ..+ -.-..||+.+ |-|..-|+.|...+...++.
T Consensus 26 ~~Lt~~e~~vl~l~--~~g----~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLL--SEG----LTNKQIADRM-FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHH--HTT----CCHHHHHHHH-TCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHH--HcC----CCHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 35677777777653 212 2468999999 68999999998888877754
No 140
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=40.03 E-value=67 Score=20.05 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 22 KLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 22 k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
..+..+|...+. -....||+.+ |-|...|..|.+.|.+
T Consensus 10 ~~iL~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 10 RILVRELAADGR---ATLSELATRA-GLSVSAVQSRVRRLES 47 (150)
T ss_dssp HHHHHHHHHCTT---CCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344556766543 3699999999 6999999999998876
No 141
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=39.72 E-value=34 Score=22.25 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=21.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 38 RWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 38 rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
+|..-. .+.|.|.++++++|..+++.|.
T Consensus 81 Kw~AW~-~l~gmS~eeAm~~YI~~v~~l~ 108 (119)
T 3flv_A 81 KWDAWS-SLGDMTKEEAMIAYVEEMKKII 108 (119)
T ss_dssp HHHHHH-HTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HccCCCHHHHHHHHHHHHHHHH
Confidence 344443 4679999999999999888774
No 142
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=39.58 E-value=45 Score=17.93 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHh---cCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 14 SSWTAKKNKLFENALAI---YDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~---~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
..+|.++-..|+..+.. .+.-+...=..||+.+ |-|..+|..=|++-.
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~-gl~~~qV~~WFqNrR 53 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT-SLSRIQIKNWVSNRR 53 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 56899999999999988 5544445557889998 699999988776543
No 143
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=39.14 E-value=80 Score=20.66 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
....+|.++-..|+......+.-....=..||..+ |-|..+|+-=|++-....+
T Consensus 104 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k~k 157 (160)
T 1e3o_C 104 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQL-NMEKEVIRVWFSNRRQKEK 157 (160)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-CCChHHhhHhhHHhhhhhh
Confidence 34579999999999999887765556678899999 6999999877766544433
No 144
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=39.03 E-value=44 Score=21.27 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=24.8
Q ss_pred hhHHHHHHHcCC-C----CHHHHHHHHHHHHHHHhhhcCC
Q 041937 37 DRWQIIAKIVGG-T----SEEEVKRRYEMLVDDIKSIESD 71 (88)
Q Consensus 37 ~rW~kIA~~vpg-R----T~~qc~~ry~~L~~dv~~ie~g 71 (88)
..|..||..|+- . ....++.+|..++-.......+
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~~ 113 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKN 113 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 479999999963 2 2578899998766555544444
No 145
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=38.85 E-value=50 Score=18.19 Aligned_cols=50 Identities=6% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 15 SWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 15 ~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
.-+..|..+|.-...- ..+.+-.+..||+.+ |-|..-|+.+.......++
T Consensus 10 ~L~~~er~il~l~~~l-~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGL-IDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTT-TTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhc-ccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3466777777433210 111234799999999 6999999998887777776
No 146
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=38.75 E-value=56 Score=18.77 Aligned_cols=30 Identities=3% Similarity=0.162 Sum_probs=25.0
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 37 DRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 37 ~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
-.+..||+.+ |-|..-|+.+.......++.
T Consensus 39 ~s~~EIA~~l-gis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 39 KTLEEVGQYF-NVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp CCHHHHHHHH-TCCHHHHHHHHHHHHHHHBT
T ss_pred CCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 4699999999 69999999988877776653
No 147
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=38.20 E-value=33 Score=21.65 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=22.9
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 38 RWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 38 rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
+|..-. .+.|.|.++++.+|..+++.+..
T Consensus 65 Kw~AW~-~l~gms~eeA~~~YI~~v~~l~~ 93 (106)
T 2wh5_A 65 KWDAWN-SLGKMSREEAMSAYITEMKLVAQ 93 (106)
T ss_dssp HHHHHH-TTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHH
Confidence 566654 45899999999999998887754
No 148
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=37.91 E-value=14 Score=22.81 Aligned_cols=26 Identities=31% Similarity=0.675 Sum_probs=19.5
Q ss_pred hhHHHHHHHcCCC-----CHHHHHHHHHHHH
Q 041937 37 DRWQIIAKIVGGT-----SEEEVKRRYEMLV 62 (88)
Q Consensus 37 ~rW~kIA~~vpgR-----T~~qc~~ry~~L~ 62 (88)
..|..||..|+-- ....++.+|..++
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L 85 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLI 85 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 4899999999632 2367899998754
No 149
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=37.58 E-value=59 Score=18.69 Aligned_cols=52 Identities=10% Similarity=0.092 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
...+|.++...|+.+....+.-....=..||..+ |-|..+|+-=|++-....
T Consensus 26 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFqNRR~k~ 77 (84)
T 2kt0_A 26 RTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL-NLSYKQVKTWFQNQRMKS 77 (84)
T ss_dssp SSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Confidence 4569999999999998876654445557889998 699999987776644433
No 150
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=36.66 E-value=60 Score=18.48 Aligned_cols=51 Identities=10% Similarity=0.043 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
....+|.++...|+......+.-....=..||..+ |-|..+|+.=|++-..
T Consensus 12 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNRR~ 62 (77)
T 1nk2_P 12 RRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI-RLTPTQVKIWFQNHRY 62 (77)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh-CCCHHHHHHHhHHhhc
Confidence 34579999999999998887655555668899999 6999999877765433
No 151
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=36.47 E-value=50 Score=19.04 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 15 SWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 15 ~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
..|..|..+|.-.+. +. .-..||+.+ |-|..-|+.|...+...++
T Consensus 29 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GY----SNQEIASAS-HITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHHHT--TC----CTTHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 467777777755321 22 357899999 6899999999888777664
No 152
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=36.43 E-value=71 Score=19.28 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
...-|..|.++|.-.+. +. .-..||+.+ |-|..-|+.+...+...+
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~----s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF----LVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC----CHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46689999988865432 22 468999999 689999988887766544
No 153
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=35.93 E-value=89 Score=20.28 Aligned_cols=52 Identities=8% Similarity=0.054 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDD 64 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~d 64 (88)
....+|.++-..|+......+.-+...=..||..+ |-|..+|+.=|++-...
T Consensus 100 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l-~L~~~qV~~WFqNrR~r 151 (164)
T 2d5v_A 100 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQL-GLELSTVSNFFMNARRR 151 (164)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHhhhcChhhhcc
Confidence 44579999999999999888765666778999999 69999999888765443
No 154
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.05 E-value=37 Score=21.81 Aligned_cols=28 Identities=21% Similarity=0.544 Sum_probs=22.4
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 38 RWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 38 rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
+|..-. .+.|.|.++.+.+|..+++.+.
T Consensus 69 Kw~AW~-~l~gms~eeAm~~YI~lv~~l~ 96 (116)
T 2cqu_A 69 KWDAWN-ALGSLPKEAARQNYVDLVSSLS 96 (116)
T ss_dssp HHHHHH-HHCSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHc
Confidence 355444 3489999999999999999886
No 155
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=34.60 E-value=57 Score=19.62 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 15 SWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 15 ~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
.-|...++.+.+.|...++ .+=-.||+.++=||.+||--+-..|.
T Consensus 6 qls~~~ee~I~~fL~~~Gp---~~AL~IAK~LGlktAK~VNp~LY~m~ 50 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKDNGP---QRALVIAQALGMRTAKDVNRDLYRMK 50 (72)
T ss_dssp CCSSHHHHHHHHHHHHHCS---EEHHHHHHHTTCCSGGGTHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHcCC---chHHHHHHHhCcchhhhcCHHHHHHH
Confidence 3444445555566776654 47789999998899999976554444
No 156
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=33.95 E-value=35 Score=19.47 Aligned_cols=38 Identities=5% Similarity=-0.007 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHH
Q 041937 22 KLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYE 59 (88)
Q Consensus 22 k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~ 59 (88)
++|...+..++....-.|..||+.-.|=|.-++..--+
T Consensus 8 ~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~ 45 (83)
T 3aji_B 8 LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQ 45 (83)
T ss_dssp HHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 45666677776544557999999999999999887443
No 157
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=33.57 E-value=60 Score=17.57 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
...+|.++...|+.+....+.-+...=..||..+ |-|..+|..=|++-.
T Consensus 7 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR 55 (62)
T 2vi6_A 7 RTVFSQAQLCALKDRFQKQKYLSLQQMQELSSIL-NLSYKQVKTWFQNQR 55 (62)
T ss_dssp -CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-CCCHHHhhHHhHHhh
Confidence 4679999999999998877654444557899999 699999987666543
No 158
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=33.56 E-value=1e+02 Score=20.33 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
...+|.++-..|+......+.-....=..||..+ |-|..+|+.=|++-....++
T Consensus 103 Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 103 RTSIEVGVKGALESHFLKCPKPSAHEITGLADSL-QLEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTB
T ss_pred ceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CCChhhhhhhhHHhhHHHhh
Confidence 4569999999999998887755556678899999 69999998888775555444
No 159
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=33.06 E-value=69 Score=18.18 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=40.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 10 TISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 10 ~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
.-....+|.++...|+.+....+.-....=..||..+ |-|..+|+.=|+.-..
T Consensus 14 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR~ 66 (77)
T 1puf_A 14 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL-NLTERQVKIWFQNRRM 66 (77)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3355679999999999998877654455567899999 6999999876665433
No 160
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=32.44 E-value=60 Score=17.27 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHH
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLV 62 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~ 62 (88)
..+|.++-..|+.+....+.-....=..||..+ |-|..+|+.=|++-.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR 49 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKAL-RMTDAQVKTWFQNRR 49 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHh-CcCHHHhhHhhHHhh
Confidence 468999999999998877654445557899999 699999987665533
No 161
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=32.37 E-value=26 Score=21.24 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=15.5
Q ss_pred Cccc-CCCCCCCCCCCCCHHHHHHHHHHH
Q 041937 1 MEYS-GQRTSTISGSSWTAKKNKLFENAL 28 (88)
Q Consensus 1 ~~~~-~~~~~~~s~~~WT~eE~k~Le~al 28 (88)
|+++ +-..+..+...||.+|-..+...+
T Consensus 1 ~~~s~~~~~~~~~v~~WsvedV~~wl~~~ 29 (89)
T 1pk1_B 1 MEKTRANSHLRSQPIDWTIEEVIQYIESN 29 (89)
T ss_dssp ----------CCCGGGCCHHHHHHHHHHH
T ss_pred CCcCCCCCCCCCCchhCCHHHHHHHHHHH
Confidence 5555 455556677789999998887665
No 162
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=31.95 E-value=76 Score=18.30 Aligned_cols=52 Identities=8% Similarity=0.083 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHH---HhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENAL---AIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al---~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
...+|.++-..|+..+ ...+.-+...=..||..+ |-|..+|..=|++-....
T Consensus 5 R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNrR~r~ 59 (87)
T 1b72_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC-GITVSQVSNWFGNKRIRY 59 (87)
T ss_dssp CCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHHHHh
Confidence 4678999999999999 454543455667899999 799999988776544433
No 163
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=31.89 E-value=94 Score=19.36 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC-CCCHHHHHHHHHHHHH
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG-GTSEEEVKRRYEMLVD 63 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp-gRT~~qc~~ry~~L~~ 63 (88)
..|-..=+..+...|...+. -.-..||+.+. |-|...|.+|-+.|.+
T Consensus 8 ~~~md~~d~~IL~~L~~~g~---~s~~eLA~~l~~giS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 8 GSWMTIWDDRILEIIHEEGN---GSPKELEDRDEIRISKSSVSRRLKKLAD 55 (111)
T ss_dssp CTTCCHHHHHHHHHHHHHSC---BCHHHHHTSTTCCSCHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHcCC---CCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 45655545555567777543 36889999996 7999999999998876
No 164
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=31.47 E-value=1.4e+02 Score=21.29 Aligned_cols=34 Identities=6% Similarity=0.189 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcC
Q 041937 14 SSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVG 47 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vp 47 (88)
..||.++...|+.+....+.-.....+.||+.+.
T Consensus 147 ~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 147 FKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 4699999999999988876556678889998764
No 165
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=31.35 E-value=71 Score=17.73 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhh
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSI 68 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~i 68 (88)
...+|.++-..|+......+.-....=..||..+ |-|..+|..=|++-....+..
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 6 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL-SLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp TCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHH-CcCHhhhhHHhHHHHhHHhHh
Confidence 4678999999999998876654455567899999 699999988777655444443
No 166
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=31.23 E-value=73 Score=17.88 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=42.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhc
Q 041937 10 TISGSSWTAKKNKLFENALAI-YDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIE 69 (88)
Q Consensus 10 ~~s~~~WT~eE~k~Le~al~~-~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie 69 (88)
+-....+|.++...|+.+... .+.-....=..||..+ |-|..+|+.=|++-....+..+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~-~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA-GLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHHHHHHHhc
Confidence 345578999999999999874 4433444557899999 6999999887776555444444
No 167
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=31.06 E-value=79 Score=18.20 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDI 65 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv 65 (88)
....+|.++...|+......+.-....=..||..+ |-|..+|+.=|++-....
T Consensus 23 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~vWFqNRR~k~ 75 (81)
T 1b8i_A 23 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL-SLTERQIKIWFQNRRMKL 75 (81)
T ss_dssp -CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCHHHHHHHhHHhhhhh
Confidence 45679999999999998887654445567899999 699999987776544433
No 168
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.91 E-value=76 Score=17.99 Aligned_cols=57 Identities=7% Similarity=0.084 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcC
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIES 70 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie~ 70 (88)
....|.++-..|+.+....+.-....=..||..+ |-|..+|+.=|++-....+..+.
T Consensus 11 r~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 11 YKERAPEQLRALESSFAQNPLPLDEELDRLRSET-KMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CCCHHHhhHhhHHHHHHHHHhhh
Confidence 3468999999999998887654445557799999 69999999887765555554443
No 169
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=30.58 E-value=1.1e+02 Score=19.72 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
....+|.++-..|+......+.-....=..||..+ |-|..+|+.=|++-..
T Consensus 90 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~ 140 (146)
T 1au7_A 90 RRTTISIAAKDALERHFGEHSKPSSQEIMRMAEEL-NLEKEVVRVWFCNRRQ 140 (146)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCChhhchhhhHhhhh
Confidence 34579999999999999887765566678899999 6999999877765443
No 170
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=30.58 E-value=83 Score=18.31 Aligned_cols=54 Identities=19% Similarity=0.128 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
....+|.++...|+......+.-....=..||..+ |-|..+|+.=|++-....+
T Consensus 31 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~vWFqNRR~k~k 84 (88)
T 2r5y_A 31 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL-SLTERQIKIWFQNRRMKWK 84 (88)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh-CcCHHHhhHHhHHHHHHhH
Confidence 44579999999999998876644445567889998 6999999887766444433
No 171
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=30.46 E-value=44 Score=23.15 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHH
Q 041937 5 GQRTSTISGSSWTAKKNKLFE 25 (88)
Q Consensus 5 ~~~~~~~s~~~WT~eE~k~Le 25 (88)
|...|..=.+-||.++|+.|+
T Consensus 106 GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 106 NVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp TCSSCTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCChhhHHHHH
Confidence 666676667889999999986
No 172
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=30.02 E-value=17 Score=21.85 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 23 LFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 23 ~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
.|.+.|+.. .--.-+.+|+.+ |-+.++|.+|-+.|..
T Consensus 11 ~Fi~yIk~~---Kvv~LedLA~~F-~l~t~~~i~RI~~Le~ 47 (72)
T 1wi9_A 11 EFINYIKKS---KVVLLEDLAFQM-GLRTQDAINRIQDLLT 47 (72)
T ss_dssp HHHHHHHHC---SEECHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CeeeHHHHHHHh-CCChHHHHHHHHHHHH
Confidence 344555553 334689999999 5777889999888765
No 173
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=29.05 E-value=14 Score=23.50 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCC----------CChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 22 KLFENALAIYDKD----------TPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 22 k~Le~al~~~~~~----------~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
..|..+|.+.|+. ..-....||+.+ |-|...|+.+.......++.
T Consensus 127 ~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 127 ARLGRAIARLPEAQRALIERAFFGDLTHRELAAET-GLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 3466666655421 122456677777 57888888888877666653
No 174
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.92 E-value=1.2e+02 Score=19.56 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=23.5
Q ss_pred ChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 36 PDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 36 ~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
.-....||+.+ |-|..-|+.+.......++.
T Consensus 203 g~s~~EIA~~l-gis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 203 ELPAKEVAKIL-ETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp CCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHH
Confidence 34688999999 68999998888766665553
No 175
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=28.89 E-value=67 Score=16.72 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=16.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhh
Q 041937 46 VGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 46 vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
++|||.+|-+.-++.+.+.+..
T Consensus 8 ~~grs~eqk~~l~~~i~~~l~~ 29 (61)
T 2opa_A 8 LEGRTDEQKRNLVEKVTEAVKE 29 (61)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 5789998888888877666653
No 176
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=28.69 E-value=67 Score=16.67 Aligned_cols=27 Identities=11% Similarity=0.072 Sum_probs=22.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 39 WQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 39 W~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
-..||+.+ |-|..-|+.|...+...+.
T Consensus 16 ~~eIA~~l-~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 16 NHGISEKL-HISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp SHHHHHHT-CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHHHC
Confidence 57999999 6899999998887776654
No 177
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=28.55 E-value=1.4e+02 Score=21.79 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=36.8
Q ss_pred CCCHHHHH-HHHHHHHhcCCCCChhHHHHHHHcCCCCHHH---HHHHHHH-----HHHHHhhhcCC
Q 041937 15 SWTAKKNK-LFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEM-----LVDDIKSIESD 71 (88)
Q Consensus 15 ~WT~eE~k-~Le~al~~~~~~~~~rW~kIA~~vpgRT~~q---c~~ry~~-----L~~dv~~ie~g 71 (88)
.+.++.|. .|.+|++-++.+ =..|-+.+.+||..| ++..|+. |.++|+.--+|
T Consensus 20 ~f~~~~DA~~L~kA~kG~Gtd----E~~lieIL~~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG 81 (327)
T 1w3w_A 20 HFNPDPDAETLYKAMKGIGTN----EQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSG 81 (327)
T ss_dssp SCCCHHHHHHHHHHHSSSSCC----HHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCH
T ss_pred CCCHHHHHHHHHHHhcCCCCC----HHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCC
Confidence 46666666 777888765432 356677888999987 5677764 77777765555
No 178
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=28.25 E-value=83 Score=17.55 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHH---HhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 13 GSSWTAKKNKLFENAL---AIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al---~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
...+|.++-..|+..+ ...|.-+...=..||..+ |-|..+|..=|++-....+.
T Consensus 5 R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~-~L~~~qV~~WFqNrR~r~kk 61 (73)
T 1puf_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC-GITVSQVSNWFGNKRIRYKK 61 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHH-CcCHHHHHHHHHHHHhhccc
Confidence 4678999999999998 555544455667899998 79999999888765544443
No 179
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=28.15 E-value=81 Score=17.42 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhc
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIE 69 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie 69 (88)
...+|.++...|+......+.-+...=..||..+ |-|..+|..=|++-....+..+
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 6 RVLFSQAQVYELERRFKQQKYLSAPEREHLASMI-HLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-CCCHHHhHHHhHHHhhhhhhhh
Confidence 4678999999999998877654455567899999 6999999887776555444443
No 180
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=28.13 E-value=98 Score=18.37 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
....+|.++...|+......+.-....=..||..+ |-|..+|+.=|++-....+
T Consensus 28 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k~k 81 (96)
T 3nar_A 28 KICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES-GLARTDIVSWFGDTRYAWK 81 (96)
T ss_dssp CSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHeeecchhhhhHhh
Confidence 34569999999999998876543444456789988 6899999877776544433
No 181
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=28.05 E-value=98 Score=18.34 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
...+|.++...|+......+.-+...=..||..+ |-|..+|+.=|++-....+.
T Consensus 21 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~k~kr 74 (93)
T 3a01_A 21 RTSFTRIQVAELEKRFHKQKYLASAERAALARGL-KMTDAQVKTWFQNRRTKWRR 74 (93)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCChhhcccccHhhhhhhhh
Confidence 4569999999999998887654555567889888 69999998877664444333
No 182
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=27.64 E-value=1e+02 Score=18.52 Aligned_cols=58 Identities=9% Similarity=0.010 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCC
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESD 71 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie~g 71 (88)
-...|.++-..|+......+.-+...=..||..+ |-|..||+-=|++-....+..+..
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l-gLte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQT-KLTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHSCCSC
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CcChHHCeecccccchHHHHHHHH
Confidence 4579999999999998887655566777899999 799999999888766555554443
No 183
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=27.52 E-value=1.7e+02 Score=21.06 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=36.3
Q ss_pred CCCCHHHHH-HHHHHHHhcCCCCChhHHHHHHHcCCCCHHH---HHHHHHH-----HHHHHhhhcCC
Q 041937 14 SSWTAKKNK-LFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEM-----LVDDIKSIESD 71 (88)
Q Consensus 14 ~~WT~eE~k-~Le~al~~~~~~~~~rW~kIA~~vpgRT~~q---c~~ry~~-----L~~dv~~ie~g 71 (88)
..+.++.|. .|.+|++-++.+ =..|-+.+.+||..| ++..|+. |.++|+.-=+|
T Consensus 12 ~~~~~~~Da~~L~~A~kG~Gtd----e~~lieIL~~rs~~q~~~I~~~Y~~~~g~~L~~dl~~e~sG 74 (320)
T 1yii_A 12 SPFDARADAEALRKAMKGMGTD----EETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTG 74 (320)
T ss_dssp SSCCHHHHHHHHHHHHSSSSCC----HHHHHHHHHHSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCH
T ss_pred CCCCHHHHHHHHHHHhcCCCCC----HHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCc
Confidence 345777766 777888765432 255667888899987 5777764 67777765444
No 184
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=26.65 E-value=1.2e+02 Score=19.94 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041937 6 QRTSTISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDD 64 (88)
Q Consensus 6 ~~~~~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~d 64 (88)
+.+...|++++|.+|=..+.+++...... + =|..++.+....|.+.
T Consensus 106 ~~m~~vSN~~fte~Ef~~w~~~~~~~~~~-----------~--PT~~~v~~K~~~i~~a 151 (153)
T 2bze_A 106 FRLEFVSNQEFTESEFMKWKEAMFSAGMQ-----------L--PTLDEINKKELSIKEA 151 (153)
T ss_dssp ECGGGBCCSCCCHHHHHHHHHHHHHHTCC-----------C--CBHHHHHHHHHHHHHH
T ss_pred EEeeEeeCCCCCHHHHHHHHHHHHHcCCC-----------C--CCHHHHHHHHHHHHHH
Confidence 34556788999999988888887774322 3 3677777777776554
No 185
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=26.61 E-value=89 Score=17.40 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHH---hcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 041937 14 SSWTAKKNKLFENALA---IYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~---~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
+.+|.++-..|+..+. ..|.-+...=..||..+ |-|..||..=|+.-...++
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~-~l~~~qV~~WFqNrR~r~k 57 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT-GLTILQVNNWFINARRRIV 57 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh-CcCHHHhhhhhHHHHHHHh
Confidence 4688999999999999 44543455667899888 7999999887776554443
No 186
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=26.35 E-value=61 Score=20.78 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=19.6
Q ss_pred hhHHHHHHHcCC-C----CHHHHHHHHHHHHH
Q 041937 37 DRWQIIAKIVGG-T----SEEEVKRRYEMLVD 63 (88)
Q Consensus 37 ~rW~kIA~~vpg-R----T~~qc~~ry~~L~~ 63 (88)
..|..||..|+- . ....++.+|..++-
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~ 95 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL 95 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhH
Confidence 589999999953 2 24678888976443
No 187
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=25.96 E-value=1.9e+02 Score=20.94 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=37.9
Q ss_pred CCCCHHHHH-HHHHHHHhcCCCCChhHHHHHHHcCCCCHHH---HHHHHHH-----HHHHHhhhcCC
Q 041937 14 SSWTAKKNK-LFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEM-----LVDDIKSIESD 71 (88)
Q Consensus 14 ~~WT~eE~k-~Le~al~~~~~~~~~rW~kIA~~vpgRT~~q---c~~ry~~-----L~~dv~~ie~g 71 (88)
..+.+++|. .|.+|++-++.+ =..|-+.+.+||..| ++..|+. |..+|+.-=+|
T Consensus 15 ~~~~~~~Da~~L~kA~kG~Gtd----E~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~lkselsG 77 (322)
T 2zhj_A 15 SGFNATEDAQVLRKAMKGLGTD----EDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKSELSS 77 (322)
T ss_dssp TTCCHHHHHHHHHHHHSSSSCC----HHHHHHHHTTSCHHHHHHHHHHHHHHHCSCHHHHHHHHCCH
T ss_pred CCCCHHHHHHHHHHHhcCCCCC----HHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHhhcCc
Confidence 357777776 778888866432 367778899999987 5777764 66777754444
No 188
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.86 E-value=1.1e+02 Score=18.05 Aligned_cols=56 Identities=14% Similarity=0.070 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCC
Q 041937 15 SWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIESD 71 (88)
Q Consensus 15 ~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie~g 71 (88)
..|.++-..|+.+....+.-....=..||..+ |-|..+|+.=|++-....+..+..
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVET-KLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHh-CCCHHhccHhhHhHHHHHHHHhHh
Confidence 48999999999998887654455567899999 699999988887766555555443
No 189
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.67 E-value=92 Score=17.24 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhc
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDDIKSIE 69 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~dv~~ie 69 (88)
....+|.++...|+......+.-....=..||..+ |-|..+|+.=|++-....+..+
T Consensus 12 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 12 NRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRT-DLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCHHHHHHHhHHHHHHHHHHH
Confidence 35679999999999998776543344456788888 6899999888877665555433
No 190
>1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A
Probab=25.61 E-value=26 Score=25.13 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=25.6
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHH-HHHHHhhh
Q 041937 37 DRWQIIAKIVGGTSEEEVKRRYEM-LVDDIKSI 68 (88)
Q Consensus 37 ~rW~kIA~~vpgRT~~qc~~ry~~-L~~dv~~i 68 (88)
.-|+..|+..+.+|++|++.-|.. ...||.+|
T Consensus 75 ~v~~~kAk~~~~~TaeeyKayy~~gYkTDv~~I 107 (215)
T 1txl_A 75 PVFQKKADADKTKTFAEIKDYYHKGYATDIEMI 107 (215)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHhccCCCcceE
Confidence 468889998888999999999975 55566655
No 191
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=25.57 E-value=39 Score=19.94 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHH
Q 041937 22 KLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYE 59 (88)
Q Consensus 22 k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~ 59 (88)
++|...+.+.+....-.|+.||+.-.|=|.-|+..--+
T Consensus 18 ~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 18 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp HHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 35555666666444557999999999999999877443
No 192
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=25.34 E-value=1.4e+02 Score=19.16 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
....+|.++-..|+......+.-....=..||..+ |-|..+|+.=|++-..
T Consensus 96 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNrR~ 146 (151)
T 3d1n_I 96 RRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKEL-NYDREVVRVWFSNRRQ 146 (151)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CCCHHHhHHHHHHHHh
Confidence 34569999999999999887765566678899999 6999999877765443
No 193
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=25.34 E-value=2.3e+02 Score=23.07 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=39.8
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCCCChhHHHHHHHcCCCCHHH---HHHHHHH-----HHHHHhhhcCC
Q 041937 13 GSSWTAKKNK-LFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEM-----LVDDIKSIESD 71 (88)
Q Consensus 13 ~~~WT~eE~k-~Le~al~~~~~~~~~rW~kIA~~vpgRT~~q---c~~ry~~-----L~~dv~~ie~g 71 (88)
...+++++|. .|.+|+.-++-+ =..|-..++.||..| ++..|+. |..+|+..-+|
T Consensus 16 ~~~f~~~~Da~~L~kA~kG~GtD----E~~iI~IL~~rs~~QR~~I~~~Y~~~~gkdL~~~LkselsG 79 (672)
T 1m9i_A 16 FPGFDPNQDAEALYTAMKGFGSD----KEAILDIITSRSNRQRQEVCQSYKSLYGKDLIADLKYELTG 79 (672)
T ss_dssp CCSCCHHHHHHHHHHHTSSSSCC----HHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCH
T ss_pred CCCCChHHHHHHHHHHhcCCCCC----HHHHHHHHhcCCHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 3458887775 778888766432 378899999999976 6778875 67777765555
No 194
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=25.24 E-value=34 Score=21.13 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHH
Q 041937 17 TAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEV 54 (88)
Q Consensus 17 T~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc 54 (88)
|..=+..|...-...+ ..|..+|..+ |=|..++
T Consensus 14 ~~~~~~~~~~ia~~lg----~~Wk~LAr~L-g~s~~~I 46 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLG----LSWAELAREL-QFSVEDI 46 (111)
T ss_dssp SHHHHHHHHHHHHHHT----TTHHHHHHHT-TCCHHHH
T ss_pred HhHHHHHHHHHHHHHh----hhHHHHHHHc-CCCHHHH
Confidence 4444445544444433 3799999999 5665544
No 195
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=25.15 E-value=81 Score=16.39 Aligned_cols=22 Identities=9% Similarity=0.308 Sum_probs=16.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhh
Q 041937 46 VGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 46 vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
++|||.+|-+.-++.+.+.+..
T Consensus 8 ~~grs~e~k~~l~~~i~~~l~~ 29 (62)
T 1otf_A 8 IEGRTDEQKETLIRQVSEAMAN 29 (62)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 5789999888888877666553
No 196
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=24.66 E-value=38 Score=21.04 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=20.6
Q ss_pred CcccCCC--CC-CCCCCCCCHHHHHHHHHHHHhcCCCCChhHHHHHH-HcCCCC--------HHHHHHHHHHH
Q 041937 1 MEYSGQR--TS-TISGSSWTAKKNKLFENALAIYDKDTPDRWQIIAK-IVGGTS--------EEEVKRRYEML 61 (88)
Q Consensus 1 ~~~~~~~--~~-~~s~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~-~vpgRT--------~~qc~~ry~~L 61 (88)
|+|||.+ .| .++....- ..++.+..+...|-.=+..=|++--. .+++++ ...|.+||...
T Consensus 3 ms~~~~~~~~~~~~~~qk~~-~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~ 74 (95)
T 3dxr_B 3 MSFLGFGGGQPQLSSQQKIQ-AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFET 74 (95)
T ss_dssp --------------CTTTTH-HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 8899654 23 22333333 23344444444432212223554322 223332 24478888753
No 197
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=24.18 E-value=1e+02 Score=18.69 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.0
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 37 DRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 37 ~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
--...+++.+|+..+.+|++-...|+.
T Consensus 22 fYf~D~~k~~P~~k~r~vKK~~~~LV~ 48 (78)
T 1ucr_A 22 FYFNDFTDLFPDMKQREVKKILTALVN 48 (78)
T ss_dssp EEHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHccccCHHHHHHHHHHHHh
Confidence 357789999999999999998777765
No 198
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=24.10 E-value=2.2e+02 Score=21.01 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=37.9
Q ss_pred CCCCHHHHH-HHHHHHHhcCCCCChhHHHHHHHcCCCCHHH---HHHHHHH-----HHHHHhhhcCC
Q 041937 14 SSWTAKKNK-LFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEM-----LVDDIKSIESD 71 (88)
Q Consensus 14 ~~WT~eE~k-~Le~al~~~~~~~~~rW~kIA~~vpgRT~~q---c~~ry~~-----L~~dv~~ie~g 71 (88)
..+.+++|. .|.+|+.-++-+ =..|-..+..||..| ++..|+. |..+|+..=+|
T Consensus 40 ~~f~~~~Da~~L~kA~kg~GtD----E~~iI~IL~~rs~~Qr~~I~~~Y~~~~g~dL~~~lkselsG 102 (346)
T 1hm6_A 40 PTFNPSSDVEALHKAITVKGVD----EATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTG 102 (346)
T ss_dssp SSCCHHHHHHHHHHHHSSTTCC----HHHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCH
T ss_pred CCCCHHHHHHHHHHhccCCCCC----HHHHHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHhcCc
Confidence 458887776 778888755432 367888898999977 5777765 66677654444
No 199
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.34 E-value=97 Score=18.64 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHHHHH-HHhhhcCCC
Q 041937 24 FENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVD-DIKSIESDR 72 (88)
Q Consensus 24 Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~-dv~~ie~g~ 72 (88)
+...|...+ -.=..||+.+ |-|...|+.|-+.|.. .+...+.|.
T Consensus 22 IL~lL~~~g----~sa~eLAk~L-giSk~aVr~~L~~Le~eG~I~~~~~~ 66 (82)
T 1oyi_A 22 AIKTIGIEG----ATAAQLTRQL-NMEKREVNKALYDLQRSAMVYSSDDI 66 (82)
T ss_dssp HHHHHSSST----EEHHHHHHHS-SSCHHHHHHHHHHHHHHTSSEECSSS
T ss_pred HHHHHHHcC----CCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEeCCCC
Confidence 335555433 4678999999 6999999999988854 444344443
No 200
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=23.20 E-value=85 Score=19.66 Aligned_cols=24 Identities=38% Similarity=0.340 Sum_probs=18.7
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhhh
Q 041937 45 IVGGTSEEEVKRRYEMLVDDIKSI 68 (88)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~i 68 (88)
.++|||.+|-+.-.+.+...+...
T Consensus 67 i~~GRs~eqK~~L~~~v~~~l~~~ 90 (125)
T 1otg_A 67 IGAGRSLESRQQAGEMLFELIKTH 90 (125)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999888888777776653
No 201
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=23.04 E-value=1.2e+02 Score=17.56 Aligned_cols=52 Identities=8% Similarity=0.038 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CCCCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAIY---DKDTPDRWQIIAKIVGGTSEEEVKRRYEMLVDD 64 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~~---~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L~~d 64 (88)
....+|.++-..|+..+..| |.-+...=..||..+ |-|..||..=|++-...
T Consensus 10 ~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~-gLs~~qV~~WFqNrR~r 64 (83)
T 2dmn_A 10 RKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT-NLSLLQISNWFINARRR 64 (83)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH-CcCHHHhhHHhhhhHhh
Confidence 34569999999999998875 443556677899988 69999999877764433
No 202
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=22.99 E-value=2.2e+02 Score=20.55 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=36.3
Q ss_pred CCCCHHHHH-HHHHHHHhcCCCCChhHHHHHHHcCCCCHHH---HHHHHHH-----HHHHHhhhcCC
Q 041937 14 SSWTAKKNK-LFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEM-----LVDDIKSIESD 71 (88)
Q Consensus 14 ~~WT~eE~k-~Le~al~~~~~~~~~rW~kIA~~vpgRT~~q---c~~ry~~-----L~~dv~~ie~g 71 (88)
..+.++.|. .|.+|++-++.+ =..|-+.+.+||..| ++..|+. |.++|+.--+|
T Consensus 10 ~~~~~~~DA~~L~~A~kG~Gtd----e~~lieIL~~rs~~q~~~I~~~Y~~~yg~~L~~dl~se~sG 72 (315)
T 1dm5_A 10 ASFNSREDAETLRKAMKGIGTD----EKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSG 72 (315)
T ss_dssp TTCCHHHHHHHHHHHHSSSSCC----HHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCH
T ss_pred CCCCHHHHHHHHHHHhcCCCCC----HHHHHHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHHhhcCc
Confidence 347777776 677788765432 356667788899977 5677764 66777765444
No 203
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=22.98 E-value=1.1e+02 Score=19.84 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=16.5
Q ss_pred CChhHHHHHHHcCCCC-HHHHHHHHHHHH
Q 041937 35 TPDRWQIIAKIVGGTS-EEEVKRRYEMLV 62 (88)
Q Consensus 35 ~~~rW~kIA~~vpgRT-~~qc~~ry~~L~ 62 (88)
+|..|..||..+=.-. .-.=+.-|.+++
T Consensus 36 tP~DWkslar~~L~pgq~llW~se~~e~c 64 (116)
T 4ard_A 36 TPTDWNTLVRAVLSGGDHLLWKSEFFENC 64 (116)
T ss_pred ChHhHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 6889999999874211 112344555544
No 204
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=22.91 E-value=82 Score=20.71 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.2
Q ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Q 041937 45 IVGGTSEEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~~ 67 (88)
.++|||.+|-+.-.+.+...+..
T Consensus 89 ll~GRt~EqK~~L~e~v~~al~~ 111 (146)
T 3e6q_A 89 ILDGRDAATRQALGESLCEVLAG 111 (146)
T ss_dssp EETTCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999988887777764
No 205
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=22.66 E-value=1.2e+02 Score=17.52 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHh----cCCCCChhHHHHHHHcCCCCHHHHHHHHHH
Q 041937 14 SSWTAKKNKLFENALAI----YDKDTPDRWQIIAKIVGGTSEEEVKRRYEM 60 (88)
Q Consensus 14 ~~WT~eE~k~Le~al~~----~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~ 60 (88)
..+|.++-..|+..... .+.-....=+.||..+ |-+..+|+-=|++
T Consensus 22 t~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l-gL~~~~VkvWFqN 71 (80)
T 1wh5_A 22 TKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET-GVPRQVLKVWLHN 71 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS-CCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh-CCCcccccCCccc
Confidence 46999999999998877 3333445667899999 6888888876654
No 206
>1ttw_B YSCM2; chaperone, type III secretion; 2.38A {Yersinia pestis}
Probab=22.51 E-value=65 Score=18.17 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHH
Q 041937 20 KNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRR 57 (88)
Q Consensus 20 E~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~r 57 (88)
.++.|-.++..+.+.+.-+=..||..+|.-|.-+.-.|
T Consensus 14 ~E~~FA~~VLEH~KNT~L~R~DiA~LLPR~SN~ELsqh 51 (56)
T 1ttw_B 14 DERRFAYAVLEHAKNTILNRQDVAKLLPRASNFELSQH 51 (56)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHccccccchhhhh
Confidence 45677777777776666667889999997766555443
No 207
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=22.33 E-value=94 Score=16.16 Aligned_cols=47 Identities=9% Similarity=0.066 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHHHH
Q 041937 13 GSSWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRYEM 60 (88)
Q Consensus 13 ~~~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~ 60 (88)
....|.++...|+......+.-....=..||..+ |-|..+|+.=|++
T Consensus 6 Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 52 (58)
T 3rkq_A 6 RVLFSQAQVYELERRFKQQRYLSAPERDQLASVL-KLTSTQVKIWFQN 52 (58)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CcCHHHHHHhhHH
Confidence 4678999999999998765543334446788888 6889998876654
No 208
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=21.66 E-value=1.3e+02 Score=17.41 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCCCCChhHHHHHHHcCCCCHHHHHHHHHHH
Q 041937 12 SGSSWTAKKNKLFENALAI---YDKDTPDRWQIIAKIVGGTSEEEVKRRYEML 61 (88)
Q Consensus 12 s~~~WT~eE~k~Le~al~~---~~~~~~~rW~kIA~~vpgRT~~qc~~ry~~L 61 (88)
....+|.++-..|+..+.. .+.-+...=..||..+ |-|..+|..=|+.-
T Consensus 30 ~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~-gL~~~qV~~WFqNr 81 (87)
T 1mnm_C 30 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT-SLSRIQIKNWVSNR 81 (87)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence 4567999999999999998 6644445557789888 69999998877653
No 209
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=21.37 E-value=96 Score=18.43 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=15.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q 041937 46 VGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 46 vpgRT~~qc~~ry~~L~~dv~ 66 (88)
++|||.+|-++.++.+.+.+.
T Consensus 64 ~~g~~~eqk~~l~~~i~~~l~ 84 (113)
T 1hfo_A 64 IGGIEPSRNRDHSAKLFDHLN 84 (113)
T ss_dssp SSSCSHHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHHH
Confidence 578998888888887666554
No 210
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=21.28 E-value=2.3e+02 Score=20.33 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=35.4
Q ss_pred CCHHHHH-HHHHHHHhcCCCCChhHHHHHHHcCCCCHHH---HHHHHHH-----HHHHHhhhcCC
Q 041937 16 WTAKKNK-LFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEM-----LVDDIKSIESD 71 (88)
Q Consensus 16 WT~eE~k-~Le~al~~~~~~~~~rW~kIA~~vpgRT~~q---c~~ry~~-----L~~dv~~ie~g 71 (88)
+++++|. .|.+|+.-++-+ =..|-..+..||..| ++..|+. |..+|+..=+|
T Consensus 2 f~~~~Da~~L~kA~kg~Gtd----e~~ii~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG 62 (308)
T 2hyv_A 2 FDAERDALNIETAIKTKGVD----EVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSALSG 62 (308)
T ss_dssp CCHHHHHHHHHHHHHSTTCC----HHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHhcCCCCC----HHHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHHHcCC
Confidence 4455554 788899765432 378888999999977 5777765 66677655444
No 211
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=21.22 E-value=99 Score=18.48 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=16.5
Q ss_pred HcCCCCHHHHHHHHHHHHHHHh
Q 041937 45 IVGGTSEEEVKRRYEMLVDDIK 66 (88)
Q Consensus 45 ~vpgRT~~qc~~ry~~L~~dv~ 66 (88)
.++|||.+|-++.++.+.+.+.
T Consensus 64 ~~~g~~~eqk~~l~~~i~~~l~ 85 (115)
T 1uiz_A 64 SIGKIGGPQNKSYTKLLCDILT 85 (115)
T ss_dssp ESSCCSHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHHH
Confidence 3678998888888887666554
No 212
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=20.82 E-value=3.4e+02 Score=22.03 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=39.9
Q ss_pred CCCCHHHHH-HHHHHHHhcCCCCChhHHHHHHHcCCCCHHH---HHHHHHH-----HHHHHhhhcCC
Q 041937 14 SSWTAKKNK-LFENALAIYDKDTPDRWQIIAKIVGGTSEEE---VKRRYEM-----LVDDIKSIESD 71 (88)
Q Consensus 14 ~~WT~eE~k-~Le~al~~~~~~~~~rW~kIA~~vpgRT~~q---c~~ry~~-----L~~dv~~ie~g 71 (88)
..+++++|. .|.+|++-++-+ =..|-..++.||..| ++..|+. |..+|+..=+|
T Consensus 360 ~~f~~~~Da~~L~kA~kG~GtD----E~~iI~IL~~rs~~QR~~I~~~Y~~~~gkdL~~~LkselsG 422 (672)
T 1m9i_A 360 NDFNPDADAKALRKAMKGLGTD----EDTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDLKSEISG 422 (672)
T ss_dssp TTCCHHHHHHHHHHHHSSSSCC----HHHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCT
T ss_pred CCCChHHHHHHHHHHhcCCCCC----HHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHHHcCC
Confidence 457777776 788898876532 368888999999976 6778875 77788776565
No 213
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.72 E-value=1.4e+02 Score=17.59 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHcCC-------CCHHHHHHHHHHHHHHHhhhcCCCCC
Q 041937 23 LFENALAIYDKDTPDRWQIIAKIVGG-------TSEEEVKRRYEMLVDDIKSIESDRVP 74 (88)
Q Consensus 23 ~Le~al~~~~~~~~~rW~kIA~~vpg-------RT~~qc~~ry~~L~~dv~~ie~g~v~ 74 (88)
.|...|...+-....+|..|...+.+ .+..+.+.-|..++..++..+.-..|
T Consensus 22 ~F~~mL~e~~I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~~e~~e~~ 80 (83)
T 2doe_A 22 DFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSSGP 80 (83)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHSCCCCCST
T ss_pred HHHHHHhhCCCCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 67777888875566799999998865 45667777788888888765554333
No 214
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=20.61 E-value=43 Score=16.33 Aligned_cols=17 Identities=24% Similarity=0.601 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 041937 51 EEEVKRRYEMLVDDIKS 67 (88)
Q Consensus 51 ~~qc~~ry~~L~~dv~~ 67 (88)
++++++.|..|++.|+.
T Consensus 3 ~e~mr~Q~~~lveKvq~ 19 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQA 19 (26)
T ss_dssp HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778888888888764
No 215
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=20.57 E-value=1.7e+02 Score=18.55 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHhcCCC-CChhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041937 17 TAKKNKLFENALAIYDKD-TPDRWQIIAKIVGGTSEEEVKRRYEMLVD 63 (88)
Q Consensus 17 T~eE~k~Le~al~~~~~~-~~~rW~kIA~~vpgRT~~qc~~ry~~L~~ 63 (88)
|..|--+|...+.....+ ....-+.||+.+ |.|..+|.+.-..|.+
T Consensus 31 s~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~-~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 31 NETELILLLKIKMHLEKGSYFPTPNQLQEGM-SISVEECTNRLRMFIQ 77 (135)
T ss_dssp CHHHHHHHHHHHHHHTTTCCSCCHHHHHTTS-SSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344444444444432222 224689999999 6999999998777665
No 216
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=20.45 E-value=78 Score=21.11 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhcCCC----------------CChhHHHHHHHcC
Q 041937 16 WTAKKNKLFENALAIYDKD----------------TPDRWQIIAKIVG 47 (88)
Q Consensus 16 WT~eE~k~Le~al~~~~~~----------------~~~rW~kIA~~vp 47 (88)
-.....|.|..|+.+|+.. +|..|+.+|+++=
T Consensus 19 l~~K~iKeLk~Av~~YGp~APyT~~lle~la~~~LtP~DW~~lara~L 66 (140)
T 2kgf_A 19 FDFAVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWNTLVRAVL 66 (140)
T ss_dssp CCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHTSBCCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHhCCCChHHHHHHHHHHc
Confidence 3456677888888888754 4889999998873
No 217
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=20.15 E-value=1.7e+02 Score=18.16 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHcCCCCHHHHHHHH
Q 041937 15 SWTAKKNKLFENALAIYDKDTPDRWQIIAKIVGGTSEEEVKRRY 58 (88)
Q Consensus 15 ~WT~eE~k~Le~al~~~~~~~~~rW~kIA~~vpgRT~~qc~~ry 58 (88)
.+++++-..+...|...+- ...-..+||..+| .|.++++.-|
T Consensus 46 k~~~e~a~~l~e~L~~~~l-~e~~a~~I~nl~P-~t~dElraii 87 (107)
T 1go3_F 46 KLDKEEAKKLVEELISLGI-DEKTAVKIADILP-EDLDDLRAIY 87 (107)
T ss_dssp CSCHHHHHHHHHHHHHTTC-CHHHHHHHHHHCC-CSHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhCCC-CHHHHHHHHHhCC-CCHHHHHHHH
Confidence 4577777777777777653 3445889999999 8999987643
Done!