BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041942
(498 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/529 (65%), Positives = 418/529 (79%), Gaps = 39/529 (7%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
+R + S+LW+ CT + TLKQI A + + GFNS++SALRELIY+ S+ I G + YAH++F
Sbjct: 12 SRQQRSQLWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFP 71
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
ITEPDTFM+NT+IRGSAQS +PL+A+ LY+QME ++P+KFTF FVLKACTRL + M
Sbjct: 72 HITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKM 131
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
GF VHG++ + GFE N FVRN+LIYFHANCGDL A LFDG AK DVVAWS+LTAGYAR
Sbjct: 132 GFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYAR 191
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
RGEL +AR LFDEMPV+DLVSWNVMITGYAK+GEME A +LF+EVPKRDVV+WNAMI+GY
Sbjct: 192 RGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGY 251
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
VLCG N+QALEMFEEMRSVGE PD+VTMLSLL+AC DLGDL+ G+++HC + +M
Sbjct: 252 VLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLS 311
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
VL GNALIDMYAKCGSI RA+EVF GMR++DVSTW++++GGLAFHG AE+SI +F EM++
Sbjct: 312 VLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRK 371
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
LK+RP EITFVGVLVACSHAG+VEEG++YF LMRDEYNIEPNIRHYG
Sbjct: 372 LKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLN 431
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
+HG+VELGR AN +LL MR DESGDYVLLSNIYA
Sbjct: 432 EAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYA 491
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
SRGEW+ VEKVRKLMDDS ++K+ GCSLIE D+KA + +LF+ KPK NS
Sbjct: 492 SRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGDNKALMHFLFDSKPKLNS 540
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/511 (65%), Positives = 402/511 (78%), Gaps = 40/511 (7%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ + GFNS++SALRELIY+ S+ I G + YAH++F ITEPDTFM+NT+IRGSAQS +PL
Sbjct: 1 MIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPL 60
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147
+A+ LY+QME ++P+KFTF FVLKACTRL + MGF VHG++ + GFE N FVRN+LI
Sbjct: 61 NAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLI 120
Query: 148 YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV 207
YFHANCGDL A LFDG AK DVVAWS+LTAGYARRGEL +AR LFDEMPV+DLVSWNV
Sbjct: 121 YFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNV 180
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
MITGYAK+GEME A +LF+EVPKRDVV+WNAMI+GYVLCG N+QALEMFEEMRSVGE PD
Sbjct: 181 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPD 240
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+VTMLSLL+AC DLGDL+ G+++HC + +M VL GNALIDMYAKCGSI RA+EVF
Sbjct: 241 EVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVF 300
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
GMR++DVSTW++++GGLAFHG AE+SI +F EM++LK+RP EITFVGVLVACSHAG+VE
Sbjct: 301 QGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVE 360
Query: 388 EGKKYFKLMRDEYNIEPNIRHYG------------------------------------- 410
EG++YF LMRDEYNIEPNIRHYG
Sbjct: 361 EGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGA 420
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
+HG+VELGR AN +LL MR DESGDYVLLSNIYASRGEW+ VEKVRKLMDDS ++K+
Sbjct: 421 CRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEA 480
Query: 469 GCSLIEADDKAFLQYLFNLKPKPN-SGNLDT 498
GCSLIE D+KA + +LF+ KP GN DT
Sbjct: 481 GCSLIEGDNKALMHFLFDSKPNLFIEGNDDT 511
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/531 (62%), Positives = 411/531 (77%), Gaps = 40/531 (7%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
TNR + S LWK C NL LKQI A + I GFNS+ +ALRELI++G++ I GAINYAH++F
Sbjct: 11 TNRKQPSSLWKNCNNLLALKQIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVF 70
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
+ITEPD FM+NT++RGS+QS+NP V LYTQME +KP+KFTFSF+LK CTRL +R
Sbjct: 71 AQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRK 130
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
GFCVHGK++KYGFE N FVRN+LIYFH+NCGDL A +F + VV+WS+LTAGYA
Sbjct: 131 TGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYA 190
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
RRGEL +AR +FDEMPV+DLVSWNVMITGY K GEME A LF+E P++DVV+WN MI+G
Sbjct: 191 RRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAG 250
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
YVL G +QALEMFEEMR+VGE PD+VTMLSLL+ACADLGDL+VG+K+HC++ +MT G
Sbjct: 251 YVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDL 310
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
VL GNAL+DMYAKCGSIE A++VF MR++DV+TW+++IGGLAFHG AEESI +F EMQ
Sbjct: 311 SVLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQ 370
Query: 363 RLK-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
LK ++P EITFVGV+VACSHAG VEEG++YFKLMR+ Y+IEPN+ H+G
Sbjct: 371 ALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGL 430
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
VHG+VELGRLAN+RLL +R+DESGDYVLLSNI
Sbjct: 431 LSEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNI 490
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
YAS GEW+ E+VRKLMDD ++K+ G SLIEADD+A +Q+LF+ KPK NS
Sbjct: 491 YASAGEWDGAEEVRKLMDDGGVRKEAGRSLIEADDRAVMQFLFDPKPKLNS 541
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/528 (60%), Positives = 402/528 (76%), Gaps = 39/528 (7%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
N NR + S LW+KCTN R+LKQ+ A + +NG NS +S LRELI+ ++V+ G ++YAH+
Sbjct: 9 NSFNRFQQSSLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQ 68
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I++PD FM+NT+IRGSAQ+ P AV LYTQME ++P+KFTFSFVLKACT+L +
Sbjct: 69 LFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSW 128
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+GF +HGK++K GF+ N FVRN+LIYFHANCGDL TA LFD AK +VV WS+LTAG
Sbjct: 129 VKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAG 188
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YARRG+L +AR LFDEMP++DLVSWNVMIT YAK GEMEKA +LF+EVPK+DVV+WNAMI
Sbjct: 189 YARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMI 248
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+GYVL +NK+ALEMF+ MR +G+RPDDVTMLS+L+A ADLGDLE+GKK+H ++ DM G
Sbjct: 249 AGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCG 308
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
VL NALIDMYAKCGSI A+EVF GMR +D S+W+++IGGLA HG AEESI +F+E
Sbjct: 309 DLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQE 368
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M RLK++P EITFV VLVACSHAGKV EG+ YF LM++ + IEPNI+HYG
Sbjct: 369 MLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAG 428
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
VHGDVELGR AN++LL MRKDESGDYVLLSN
Sbjct: 429 LLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSN 488
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKP 489
IYAS+GEW+ V+KVRKLMDD +KK+ G SLI++D+ + +LF+ KP
Sbjct: 489 IYASQGEWDGVQKVRKLMDDGGVKKKVGHSLIDSDNSFLMHFLFDSKP 536
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 295/537 (54%), Positives = 383/537 (71%), Gaps = 45/537 (8%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+RT R +LW+ C N+RTLKQI A + +NG S+ S + ELIYS S+ +PGA+ YAHK
Sbjct: 8 DRTTNRRRPKLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHK 67
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I +PD + N ++RGSAQS P V LYT+MEK + P+++TF+FVLKAC++L +
Sbjct: 68 LFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEW 127
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
R+ GF HGK+V++GF N +V+N+LI FHANCGDL AS LFD AK VAWSS+T+G
Sbjct: 128 RSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSG 187
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+RG++ A LFDEMP +D V+WNVMITG K EM+ A ELF+ ++DVV+WNAMI
Sbjct: 188 YAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMI 247
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
SGYV CG K+AL +F+EMR GE PD VT+LSLL+ACA LGDLE GK++H +L+ S
Sbjct: 248 SGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASV 307
Query: 301 VAKVLHG----NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ + G NALIDMYAKCGSI+RAIEVF G++DRD+STW+TLI GLA H AE SI
Sbjct: 308 SSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIE 366
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
MF EMQRLKV P E+TF+GV++ACSH+G+V+EG+KYF LMRD YNIEPNI+HYG
Sbjct: 367 MFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDML 426
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
++G+VELG+ AN++LL+MRKDESGDYV
Sbjct: 427 GRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYV 486
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA-DDKAFLQYLFNLKPKPNS 493
LLSNIYAS G+W+ V+KVRK+ DD+ +KK G SLIE DDK ++YL + +P+ S
Sbjct: 487 LLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDDKLMMRYLLSSEPESRS 543
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/537 (54%), Positives = 382/537 (71%), Gaps = 45/537 (8%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+RT R S+LW+ C N RTL QI A + +NG S+ S + ELIYS S+ +PGA+ YAHK
Sbjct: 8 DRTTNRRRSKLWQNCKNFRTLMQIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHK 67
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I +PD + N ++RGSAQS P V LYT+MEK + P+++TF+FVLKAC++L +
Sbjct: 68 LFEEIPKPDVSICNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEW 127
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
R+ GF +HGK+V++GF N +V+N+LI FHANCGDL AS LFD AK VAWSS+T+G
Sbjct: 128 RSNGFAIHGKVVRHGFLLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSG 187
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+RG++ A LFDEMP +D V+WNVMITG K EM+ A ELF+ ++DVV+WNAMI
Sbjct: 188 YAKRGKIDEAMRLFDEMPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMI 247
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
SGYV CG K+AL +F+EMR GE PD VT+LSLL+ACA LGDLE GK++H +L+ S
Sbjct: 248 SGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASV 307
Query: 301 VAKVLHG----NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ + G NALIDMYAKCGSI+RAIEVF GM+DRD+STW+TLI GLA H AE S+
Sbjct: 308 SSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVE 366
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
MF EMQRLKV P E+TF+GV++ACSH+G+V+EG+KYF LMRD YNIEPNI+HYG
Sbjct: 367 MFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDML 426
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
++G+VELG+ AN++LL+MRKDESGDYV
Sbjct: 427 GRAGLLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYV 486
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA-DDKAFLQYLFNLKPKPNS 493
LLSNIYAS G+W+ V+KVRK+ DD+ +KK G SLIE DDK ++YL + + + S
Sbjct: 487 LLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGISLIEEDDDKLMMRYLLSSEAESKS 543
>gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 288/455 (63%), Positives = 355/455 (78%), Gaps = 9/455 (1%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
T R + S LW+ CTNLR+LKQI A + I GFNS S ALRELI++ ++VIPG I+YAH++F
Sbjct: 11 TKRQQPSSLWQNCTNLRSLKQIHASLIIKGFNSSSYALRELIFASAIVIPGTIDYAHQLF 70
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
++ EPD FM+NT++RGS+QS +P+ AV LYTQME C IKP+KFTFSF+LKACTRL +RN
Sbjct: 71 DQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLLKACTRLEWRN 130
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
MGFC+HGK +K+GF+ N FVRN+L+Y+HA CGDL A +FD AK DVVAWS+LTAGYA
Sbjct: 131 MGFCIHGKALKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRDVVAWSALTAGYA 190
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
RRGEL MAR LFDEMPV+DLV+WNV+IT Y K+GEM A +LFNEVP+RDVV+WNAMI+G
Sbjct: 191 RRGELCMARRLFDEMPVKDLVAWNVIITAYVKRGEMACARKLFNEVPRRDVVTWNAMIAG 250
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
+V CG N+QALEMFEEM SVGE+PD+VTMLSLL+AC DLGDLEVGKKVH ++L+M+ G
Sbjct: 251 FVHCGENEQALEMFEEMISVGEQPDEVTMLSLLSACTDLGDLEVGKKVHSSILEMSLGDL 310
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
VL GNAL MYAKCGSIERA+EVF GMR++DV+TW+++I GLA HG AEESI +FREMQ
Sbjct: 311 SVLLGNALTYMYAKCGSIERALEVFRGMREKDVTTWNSVIVGLALHGHAEESIHLFREMQ 370
Query: 363 RL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLA 421
RL ++P EITFVGVLVACSHAGKVEEG++YF LM + Y + +R H L L
Sbjct: 371 RLNNIKPNEITFVGVLVACSHAGKVEEGQRYFDLMTNLYILAGFLRIENSHHSGCLEPLN 430
Query: 422 NKRLLNMRKDESGDY--------VLLSNIYASRGE 448
R+L D S + +LLS Y G+
Sbjct: 431 FARVLIRLMDLSASFKNLVIHMGILLSVTYLVLGK 465
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/504 (56%), Positives = 360/504 (71%), Gaps = 45/504 (8%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYS------GSVVIPGAINYAHKMFVKITEPDT 70
NL+TLKQI AL+ INGFN++ + L +L+ + G P NYAH++F +I +PDT
Sbjct: 14 NLKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDT 73
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
FMYN +IRGS+QS NPL A+ LYT+M + +K + +TF FVLKACTRL + N G VHG
Sbjct: 74 FMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGM 133
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+++ GF N VRN+L+ FHA CGDLN A+ LFD K DVVAWSSL AGYARRG+L +A
Sbjct: 134 VLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVA 193
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R LF+EMP RDLVSWNVMITGY KQGEME A LF+E P +DVVSWNAMI+GYV+CG++K
Sbjct: 194 RKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSK 253
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
QALE+F EM G PD+VT+LSLL+ACADLGDLE GKKVH +++++ G L GNAL
Sbjct: 254 QALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNAL 313
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMYAKCG+I+ +++VF + D+DV +W+++I G+A HG +ES+++F+ MQR K+ P E
Sbjct: 314 IDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNE 373
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
ITFVGVLVACSHAG+++EG KYF LM EY IEPNIRH G
Sbjct: 374 ITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFID 433
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
VHGDVEL ++AN++L +MRKD SGDYVL+SN+YASRGEW+
Sbjct: 434 SMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYASRGEWDG 493
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEA 475
EKVRKLMDDS + K G S +EA
Sbjct: 494 AEKVRKLMDDSGVTKIRGSSFVEA 517
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 285/519 (54%), Positives = 363/519 (69%), Gaps = 50/519 (9%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSG--SVVIPGA----I 55
R R RS+ TN+ TLKQI AL+ +NG S+ LR+L+ + S+V P A I
Sbjct: 3 RKRRGRST-----ITNVGTLKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVI 57
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
YA +MF +I +PDTFM+NT IRGS+QS +P+ AV LY QM++ S+KP+ FTF FVLKAC
Sbjct: 58 RYALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKAC 117
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
T+L + N G VHG++++ GF N VRN+L+ FHA CGDL A+ +FD K DVVAWS
Sbjct: 118 TKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWS 177
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
+L AGYA+RG+LS+AR LFDEMP RDLVSWNVMIT Y K GEME A LF+E P +D+VS
Sbjct: 178 ALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVS 237
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WNA+I GYVL +N++ALE+F+EM VGE PD+VTMLSLL+ACADLGDLE G+KVH ++
Sbjct: 238 WNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKII 297
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
+M G L GNAL+DMYAKCG+I +A+ VF +RD+DV +W+++I GLAFHG AEES+
Sbjct: 298 EMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESL 357
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
+FREM+ KV P E+TFVGVL ACSHAG V+EG +YF LM+++Y IEP IRH G
Sbjct: 358 GLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDM 417
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
VHGDVEL + AN++LL MR D+SGDY
Sbjct: 418 LGRAGLLKEAFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDY 477
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
VLLSN+YAS+GEW+ E VRKLMDD+ + K G S +EA
Sbjct: 478 VLLSNVYASQGEWDGAENVRKLMDDNGVTKNRGSSFVEA 516
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 281/510 (55%), Positives = 365/510 (71%), Gaps = 45/510 (8%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ +NG S+ S + ELIYS S+ +PGA+ YAHK+F +I +PD + N ++RGSAQS P
Sbjct: 1 MVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPE 60
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147
V LYT+MEK + P+++TF+FVLKAC++L +R+ GF HGK+V++GF N +V+N+LI
Sbjct: 61 KTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALI 120
Query: 148 YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV 207
FHANCGDL AS LFD AK VAWSS+T+GYA+RG++ A LFDEMP +D V+WNV
Sbjct: 121 LFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNV 180
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
MITG K EM+ A ELF+ ++DVV+WNAMISGYV CG K+AL +F+EMR GE PD
Sbjct: 181 MITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPD 240
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG----NALIDMYAKCGSIERA 323
VT+LSLL+ACA LGDLE GK++H +L+ S + + G NALIDMYAKCGSI+RA
Sbjct: 241 VVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRA 300
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
IEVF G++DRD+STW+TLI GLA H AE SI MF EMQRLKV P E+TF+GV++ACSH+
Sbjct: 301 IEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHS 359
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G+V+EG+KYF LMRD YNIEPNI+HYG
Sbjct: 360 GRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRT 419
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
++G+VELG+ AN++LL+MRKDESGDYVLLSNIYAS G+W+ V+KVRK+ DD+ +
Sbjct: 420 LLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRV 479
Query: 465 KKQPGCSLIEA-DDKAFLQYLFNLKPKPNS 493
KK G SLIE DDK ++YL + +P+ S
Sbjct: 480 KKPTGVSLIEEDDDKLMMRYLLSSEPESRS 509
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 286/538 (53%), Positives = 363/538 (67%), Gaps = 61/538 (11%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSG--SVVIPGAI---- 55
R R RS+ TNL TL+QI AL+ +NGF S+ LR+L+ + S+V P A
Sbjct: 3 RKRRGRST-----ITNLGTLRQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVT 57
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
YA +MF +I +PDTFM+NT IRGS+QS +P+ AV LY QM S+KP+ FTF VLKAC
Sbjct: 58 QYAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKAC 117
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
T+L + N G VHG++ + GF N VRN+L+ FHA CGDL A+ +FD K DVVAWS
Sbjct: 118 TKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWS 177
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
+L AGYA+RG+LS+AR LFDEMP RDLVSWNVMIT Y K GEME A LF+E P +DVVS
Sbjct: 178 ALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVS 237
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WNAM+ GYVL +N++ALE+F+EM VGE PD+VTMLSLL+ACADLGD G+KVH ++
Sbjct: 238 WNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLGD--XGEKVHAKIM 295
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
++ G L GNAL+DMYAKCG+I + + VF +RD+D+ +W+++IGGLAFHG AEES+
Sbjct: 296 ELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESL 355
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
+FREMQR KV P EITFVGVL ACSH G V+EG +YF LM+++Y IEPNIRH G
Sbjct: 356 GLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDM 415
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
VHGDVEL + A ++LL MR D+SGDY
Sbjct: 416 LARAGLLKEAFDFIASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDY 475
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSG 494
VLLSN+YAS GEW+ E VRKLMDD+ + K G S +EA + ++P P +G
Sbjct: 476 VLLSNVYASHGEWDGAENVRKLMDDNGVTKTRGSSFVEA---------YRIEPNPVNG 524
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 270/523 (51%), Positives = 362/523 (69%), Gaps = 46/523 (8%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
+ R LW++C +LR +KQ+ AL+ + GF SD SALREL+++ +V + GAI +A+ +F +
Sbjct: 8 QRRQPPLWRRCRSLRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQ 67
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK---CS-IKPNKFTFSFVLKACTRLLY 120
I PD FMYNT+IRG+A + P DAV LY +M + C ++P+K TF FVL+ACT +
Sbjct: 68 IPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGA 127
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
G VH +VK G E + FVRN+LI HA+CG+L AS LFDG A+ D VAWS++ G
Sbjct: 128 GGTGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITG 187
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
ARRG++ AR LFDE PV+D VSWNVMIT YAK+GEM A LFN +P+RDVVSWNAMI
Sbjct: 188 CARRGDIVAARKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMI 247
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM--T 298
SG+V CG + A+E+FE+M+ +G++PD VTMLSLL+ACAD GD++VG+++H +L +M
Sbjct: 248 SGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLR 307
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
+G +L GNALIDMYAKCGS++ A++VF MRD+DVSTW+++IGGLA HG ESI +F
Sbjct: 308 TGFTVIL-GNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVF 366
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
++M + KVRP EITFV VL+ACSH G V++G++YF LM+ Y IEPN++HYG
Sbjct: 367 KKMLKEKVRPDEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGR 426
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
VHG++EL AN++LL R DESGDYVLL
Sbjct: 427 AGLLKEAFEFIDTMKVEPNSVIWRTLLGACRVHGEIELAEHANRQLLKARNDESGDYVLL 486
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQ 482
SNIYAS GEW+ EK+RKLMDDS + KQ G ++++ K +Q
Sbjct: 487 SNIYASAGEWSESEKMRKLMDDSGVNKQAGRTVVDGSAKDLMQ 529
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/524 (51%), Positives = 360/524 (68%), Gaps = 46/524 (8%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
+ R W++C +LR +KQ+ A++ + GF SD S LREL+++ +V + GAI +A+ +F
Sbjct: 7 TQRRQPPAWRRCRSLRHIKQMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFD 66
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM----EKCSIKPNKFTFSFVLKACTRLL 119
+I PD FMYNT+IRG+A + P DAV LYT+M ++P+K TF FVL+ACT +
Sbjct: 67 QIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMG 126
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
+ G VH +VK G E + FV+N+LI HA+CG+L A+ LFDG A+ D VAWS++
Sbjct: 127 AGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMIT 186
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
G ARRG++ AR LFDE PV+DLVSWNVMIT YAK+G+M A ELF++VP+RDVVSWN M
Sbjct: 187 GCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVM 246
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
ISGYV CG + ALE+FE+M+ +GE+PD VTMLSLL+ACAD GDL+VG+++H +L DM S
Sbjct: 247 ISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFS 306
Query: 300 --GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
G VL GNALIDMYAKCGS++ A EVF MRD+DVSTW++++GGLA HG ESI M
Sbjct: 307 RNGFPVVL-GNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDM 365
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------- 410
F +M + KVRP EITFV VL+ACSH G V++G+++F LM+ +Y +EPNI+HYG
Sbjct: 366 FEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLG 425
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
VHG++EL + AN++LL R DESGDYVL
Sbjct: 426 RAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVL 485
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQ 482
LSNIYAS GEW EK+RKLMDDS + K+ G + ++ K +Q
Sbjct: 486 LSNIYASVGEWFGSEKMRKLMDDSGVNKEAGQTFVDGSVKDIIQ 529
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 267/527 (50%), Positives = 352/527 (66%), Gaps = 48/527 (9%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
T R + + LW++C +LR +KQ+ AL+ + GF SDSSALRELI++ +V + G +A +F
Sbjct: 7 TQRQQPA-LWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVF 65
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-------IKPNKFTFSFVLKAC 115
+I PD FMYNT+IRG+A S P DAV +Y +M + S ++P+K TF FVL+AC
Sbjct: 66 DRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRAC 125
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+ G VH +VK G E + FVRN+LI HA GDL A+ LFDG+A+ D VAWS
Sbjct: 126 AAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWS 185
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
++ +G+ARRG++ AR LFDE PV+DLVSWNVMIT YAK G+M A ELF+ P RDVVS
Sbjct: 186 AMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVS 245
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WNAMISGYV CG KQA+E+FE+M+++GE+PD VTMLSLL+ACAD GDL+ G+++H L
Sbjct: 246 WNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLS 305
Query: 296 DMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
S + GNALIDMYAKCGS+ A+EVF M+D++VSTW+++IGGLA HG A ES
Sbjct: 306 GRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATES 365
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
IA+FR+M + V+P EITFV VL ACSH G V++G +YF LM+ Y IEPNI+HYG
Sbjct: 366 IAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVD 425
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
+HG++EL AN+ LL R D SGD
Sbjct: 426 MLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGD 485
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQ 482
+VLLSNIYAS GEW E +RKLMDDS + K+ G ++I++ K ++
Sbjct: 486 FVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVIDSSSKDLMR 532
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 267/527 (50%), Positives = 352/527 (66%), Gaps = 48/527 (9%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
T R + + LW++C +LR +KQ+ AL+ + GF SDSSALRELI++ +V + G +A +F
Sbjct: 7 TQRQQPA-LWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVF 65
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-------IKPNKFTFSFVLKAC 115
+I PD FMYNT+IRG+A S P DAV +Y +M + S ++P+K TF FVL+AC
Sbjct: 66 DRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRAC 125
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+ G VH +VK G E + FVRN+LI HA GDL A+ LFDG+A+ D VAWS
Sbjct: 126 AAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWS 185
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
++ +G+ARRG++ AR LFDE PV+DLVSWNVMIT YAK G+M A ELF+ P RDVVS
Sbjct: 186 AMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVS 245
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WNAMISGYV CG KQA+E+FE+M+++GE+PD VTMLSLL+ACAD GDL+ G+++H L
Sbjct: 246 WNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLS 305
Query: 296 DMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
S + GNALIDMYAKCGS+ A+EVF M+D++VSTW+++IGGLA HG A ES
Sbjct: 306 GRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATES 365
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
IA+FR+M + V+P EITFV VL ACSH G V++G +YF LM+ Y IEPNI+HYG
Sbjct: 366 IAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVD 425
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
+HG++EL AN+ LL R D SGD
Sbjct: 426 MLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGD 485
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQ 482
+VLLSNIYAS GEW E +RKLMDDS + K+ G ++I++ K ++
Sbjct: 486 FVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVIDSSSKDLMR 532
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/519 (51%), Positives = 350/519 (67%), Gaps = 48/519 (9%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
R LW++C +LR +KQ+ AL+ + GF SD SALRELI++ SV + G +A +F +I
Sbjct: 10 RQPALWRRCRSLRQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIP 69
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS------IKPNKFTFSFVLKACTRLLY 120
PD FMYNT+IRG+A S P DAV +Y +M + S ++P+K TF FVL+AC +
Sbjct: 70 HPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGA 129
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
G VH +VK G E + FVRN+LI HA CGDL A+ LFDG+A+ D VAWS++ +G
Sbjct: 130 SETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISG 189
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
+ARRG++ AR LFDE PV+DLVSWNVMIT YAK G+M A ELF+ P RDVVSWNAMI
Sbjct: 190 FARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMI 249
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS- 299
SGYV CG +KQA+E+FE+M+++GE+PD VTMLSLL+ACAD GD++ G+++H L S
Sbjct: 250 SGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSR 309
Query: 300 -GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
G + VL GNALIDMYAKCGS+ A+EVF M+D++VSTW+++IGGLA HG E+I +F
Sbjct: 310 IGPSTVL-GNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVF 368
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
++M + V+P EITFV VLVACSH G V++G +YF LM+ Y IEPN++HYG
Sbjct: 369 QKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSR 428
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
+HG++EL AN+ LL R D SGD+VLL
Sbjct: 429 AGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSDASGDFVLL 488
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
SNIYAS GEW E +RKLMDDS + K+ GC++++ K
Sbjct: 489 SNIYASVGEWLGSENMRKLMDDSGVNKEAGCAVVDGSSK 527
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 260/485 (53%), Positives = 338/485 (69%), Gaps = 46/485 (9%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ + GF SD S LREL+++ +V + GAI +A+ +F +I PD FMYNT+IRG+A + P
Sbjct: 1 MALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPR 60
Query: 88 DAVFLYTQM----EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVR 143
DAV LYT+M ++P+K TF FVL+ACT + + G VH +VK G E + FV+
Sbjct: 61 DAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVK 120
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N+LI HA+CG+L A+ LFDG A+ D VAWS++ G ARRG++ AR LFDE PV+DLV
Sbjct: 121 NALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLV 180
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWNVMIT YAK+G+M A ELF++VP+RDVVSWN MISGYV CG + ALE+FE+M+ +G
Sbjct: 181 SWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMG 240
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS--GVAKVLHGNALIDMYAKCGSIE 321
E+PD VTMLSLL+ACAD GDL+VG+++H +L DM S G VL GNALIDMYAKCGS++
Sbjct: 241 EKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVL-GNALIDMYAKCGSMK 299
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A EVF MRD+DVSTW++++GGLA HG ESI MF +M + KVRP EITFV VL+ACS
Sbjct: 300 SAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACS 359
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------- 410
H G V++G+++F LM+ +Y +EPNI+HYG
Sbjct: 360 HGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIW 419
Query: 411 --------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462
VHG++EL + AN++LL R DESGDYVLLSNIYAS GEW EK+RKLMDDS
Sbjct: 420 RTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDS 479
Query: 463 DIKKQ 467
+ K+
Sbjct: 480 GVNKE 484
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 260/485 (53%), Positives = 338/485 (69%), Gaps = 46/485 (9%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ + GF SD S LREL+++ +V + GAI +A+ +F +I PD FMYNT+IRG+A + P
Sbjct: 1 MALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPR 60
Query: 88 DAVFLYTQM----EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVR 143
DAV LYT+M ++P+K TF FVL+ACT + + G VH +VK G E + FV+
Sbjct: 61 DAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVK 120
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N+LI HA+CG+L A+ LFDG A+ D VAWS++ G ARRG++ AR LFDE PV+DLV
Sbjct: 121 NALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLV 180
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWNVMIT YAK+G+M A ELF++VP+RDVVSWN MISGYV CG + ALE+FE+M+ +G
Sbjct: 181 SWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMG 240
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS--GVAKVLHGNALIDMYAKCGSIE 321
E+PD VTMLSLL+ACAD GDL+VG+++H +L DM S G VL GNALIDMYAKCGS++
Sbjct: 241 EKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVL-GNALIDMYAKCGSMK 299
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A EVF MRD+DVSTW++++GGLA HG ESI MF +M + KVRP EITFV VL+ACS
Sbjct: 300 SAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACS 359
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------- 410
H G V++G+++F LM+ +Y +EPNI+HYG
Sbjct: 360 HGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIW 419
Query: 411 --------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462
VHG++EL + AN++LL R DESGDYVLLSNIYAS GEW EK+RKLMDDS
Sbjct: 420 RTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDS 479
Query: 463 DIKKQ 467
+ K+
Sbjct: 480 GVNKE 484
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 260/485 (53%), Positives = 338/485 (69%), Gaps = 46/485 (9%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ + GF SD S LREL+++ +V + GAI +A+ +F +I PD FMYNT+IRG+A + P
Sbjct: 1 MALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPR 60
Query: 88 DAVFLYTQM----EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVR 143
DAV LYT+M ++P+K TF FVL+ACT + + G VH +VK G E + FV+
Sbjct: 61 DAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVK 120
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N+LI HA+CG+L A+ LFDG A+ D VAWS++ G ARRG++ AR LFDE PV+DLV
Sbjct: 121 NALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLV 180
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWNVMIT YAK+G+M A ELF++VP+RDVVSWN MISGYV CG + ALE+FE+M+ +G
Sbjct: 181 SWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMG 240
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS--GVAKVLHGNALIDMYAKCGSIE 321
E+PD VTMLSLL+ACAD GDL+VG+++H +L DM S G VL GNALIDMYAKCGS++
Sbjct: 241 EKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVL-GNALIDMYAKCGSMK 299
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A EVF MRD+DVSTW++++GGLA HG ESI MF +M + KVRP EITFV VL+ACS
Sbjct: 300 SAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACS 359
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------- 410
H G V++G+++F LM+ +Y +EPNI+HYG
Sbjct: 360 HGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVIW 419
Query: 411 --------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462
VHG++EL + AN++LL R DESGDYVLLSNIYAS GEW EK+RKLMDDS
Sbjct: 420 RTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDS 479
Query: 463 DIKKQ 467
+ K+
Sbjct: 480 GVNKE 484
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/497 (46%), Positives = 308/497 (61%), Gaps = 40/497 (8%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
N R+LKQI + + G S LREL+ + G ++YA K+F I+ PD FM+N +
Sbjct: 9 NPRSLKQIHGNLVVKGITSRLQPLRELLLACVASFNGGMDYARKVFDGISHPDLFMHNVM 68
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
+RG A S P A LY ++E +KP+ FTF ++L+AC L G+ VHG +VK G+
Sbjct: 69 VRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLLRACAGLPGSCAGYQVHGAVVKLGY 128
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
+ FVRN+LI HA CGDL A L D + DVVA S++ AG+A +GEL +AR LFDE
Sbjct: 129 FKDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGELDIARQLFDE 188
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
+DLV WNVM+ YAK GEMEKA L + P++DVVSWN +I+GY G+ K+ALE+
Sbjct: 189 CQHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVL 248
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
+EMR VG PD+ T++SLL+ CA+LG L G+ +H L+ ++ +L GNAL+ MYAK
Sbjct: 249 DEMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCIS-ILPGNALVSMYAK 307
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CG ++ A+EVF M++RDV TW+++IGGLAFHG AE+S+ F +M + P EI+F+ V
Sbjct: 308 CGDVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPNEISFLCV 367
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------- 410
L ACSHAG VE+G++YF LM + Y IEPN RHY
Sbjct: 368 LGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDMLGRSGLLDEAFAIVSSMRCEP 427
Query: 411 -------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
+HGDV LG+LA +RLL M +D SGDYVLLS IYAS EW VE VR
Sbjct: 428 AVVIWRTLLGACRIHGDVALGKLARERLLKMNEDASGDYVLLSGIYASCDEWFGVETVRG 487
Query: 458 LMDDSDIKKQPGCSLIE 474
MD+ I+K G + +E
Sbjct: 488 SMDERGIRKVAGYAQVE 504
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/497 (44%), Positives = 303/497 (60%), Gaps = 41/497 (8%)
Query: 19 RTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
R ++QI + + G + LREL+ S G + YA K+F I PD FM+N ++
Sbjct: 12 RAVRQIHGHLVVGGIAAARLQHLRELLLSCVATFRGRMGYARKVFDGIPRPDLFMHNAMV 71
Query: 78 RGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
RG A + P DA +Y +M + S ++P+ FTF ++L+AC L G VHG +VK GF
Sbjct: 72 RGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGF 131
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
+ +VRN+LI A CGDL ASVL D + DVVAWS++ AG+A RG+++ AR +FDE
Sbjct: 132 LKDAYVRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHAARGDMAAARKMFDE 191
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
+D+V WNVM+ YAK GEME A ELF+ P++DVVSWN +I+GY GM K ALE+F
Sbjct: 192 CTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGMLKHALEVF 251
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
+EMR+ G PD+ T++SLL+ CA+ G L+ G+ +H L ++ GNAL+ MYAK
Sbjct: 252 DEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVVGNALVSMYAK 311
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CG + A+E F M+D DV TW+++IGGLAFHG AE+S+ F++M ++ P EI+F+ V
Sbjct: 312 CGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIHPNEISFLCV 371
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------- 410
L ACSHAG VE+G+K+F LM+D Y IEPN RHY
Sbjct: 372 LGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAYAIVSNMRCEP 431
Query: 411 -------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
HG++ LG+L ++LLNM +D S DYVLLS IYAS GEW VE R+
Sbjct: 432 SAVVWRTLLGACRTHGNMTLGKLVREKLLNMNEDASADYVLLSGIYASSGEWLGVETERR 491
Query: 458 LMDDSDIKKQPGCSLIE 474
MD I+K G + I+
Sbjct: 492 SMDRRGIRKAAGYAQID 508
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/534 (37%), Positives = 291/534 (54%), Gaps = 72/534 (13%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L+ C LR LKQ+ A + I NS S P + YA +F + P
Sbjct: 102 LFNPCKTLRHLKQVHAQI-ITHHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPP 160
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+YN++IR + S+ PL+A+ LY M + +KP+ T+ FV+KAC G VH
Sbjct: 161 SLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTH 220
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+VK GFE + ++ +SLI+ +AN DL A LF+ + DVV+W+++ GY + E+ A
Sbjct: 221 VVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHA 280
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV------ 244
R +FD M RD++SWN MI GYA G++++A LF+E+P+R++VSWN+M++G+V
Sbjct: 281 RMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVE 340
Query: 245 -------------------------LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
CG +AL +F++MR+VG +P + T++SLL+ACA
Sbjct: 341 DAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACA 400
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
LG L+ G +H + D V ++ G AL+DMYAKCG I A +VF M +DV W+
Sbjct: 401 HLGALDKGLHLHTYINDNRIEVNSIV-GTALVDMYAKCGKISLATQVFNAMESKDVLAWN 459
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
T+I G+A HG +E+ +F+EM+ V P +ITFV +L ACSHAG V+EG+K M
Sbjct: 460 TIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSS 519
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y IEP + HYG +HG+ ELG +
Sbjct: 520 YGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEM 579
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
KRL+N++ SG Y+LLSNIYA+ +W+ KVR LM + I K PG S+IE
Sbjct: 580 VGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIE 633
>gi|449527613|ref|XP_004170804.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like, partial [Cucumis sativus]
Length = 315
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/309 (59%), Positives = 227/309 (73%), Gaps = 39/309 (12%)
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
KA +LF+EVPK+DVV+WNAMI+GYVL +NK+ALEMF+ MR +G+RPDDVTMLS+L+A A
Sbjct: 1 KARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASA 60
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
DLGDLE+GKK+H ++ DM G VL NALIDMYAKCGSI A+EVF GMR +D S+W+
Sbjct: 61 DLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWN 120
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
++IGGLA HG AEESI +F+EM RLK++P EITFV VLVACSHAGKV EG+ YF LM++
Sbjct: 121 SIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNV 180
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
+ IEPNI+HYG VHGDVELGR
Sbjct: 181 FKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRR 240
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
AN++LL MRKDESGDYVLLSNIYAS+GEW+ V+KVRKLMDD +KK+ G SLI++D+
Sbjct: 241 ANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLIDSDNSFL 300
Query: 481 LQYLFNLKP 489
+ +LF+ KP
Sbjct: 301 MHFLFDSKP 309
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 47/299 (15%)
Query: 159 ASVLFDGDAKMDVVAWSSLTAGY-----------------------------------AR 183
A LFD K DVV W+++ AGY A
Sbjct: 2 ARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASAD 61
Query: 184 RGELSMA----RSLFDEMPVRDL--VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
G+L + RS+FD M DL + N +I YAK G + A E+F + K+D SWN
Sbjct: 62 LGDLEIGKKIHRSIFD-MCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWN 120
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
++I G L G ++++ +F+EM + +P+++T +++L AC+ G + G+ + ++
Sbjct: 121 SIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNV 180
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIA 356
+ H ++D+ + G + A + M + + W TL+G HG E +
Sbjct: 181 FKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVE--LG 238
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVE-EGKKYFKLMRDEYNIEPNIRHYGVHGD 414
Q LK+R E + VL++ +A + E +G + + + D+ ++ + H + D
Sbjct: 239 RRANEQLLKMRKDE-SGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLIDSD 296
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 114/247 (46%), Gaps = 7/247 (2%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F ++ + D +N +I G S+ +A+ ++ M +P+ T +L A
Sbjct: 2 ARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASAD 61
Query: 118 LLYRNMGFCVHGKIVKYGF-EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
L +G +H I + + + N+LI +A CG + A +F G K D +W+S
Sbjct: 62 LGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNS 121
Query: 177 LTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+ G A G + +LF EM + +++ ++ + G++ + FN +
Sbjct: 122 IIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVF 181
Query: 233 VVSWNAMISGYVLCGMNKQAL--EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
+ N G ++ + + L E F+ + ++ P+ + +LL AC GD+E+G++
Sbjct: 182 KIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRA 241
Query: 291 HCTLLDM 297
+ LL M
Sbjct: 242 NEQLLKM 248
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+I A ++F + + DT +N+II G A + +++ L+ +M + +KPN+ TF VL
Sbjct: 99 GSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVL 158
Query: 113 KACT 116
AC+
Sbjct: 159 VACS 162
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 193/505 (38%), Positives = 286/505 (56%), Gaps = 41/505 (8%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSV-VIPGAINYAHKMFVKITEPDTFMYN 74
T++ L Q A + +G + A LI S S AI YAH +F +I P+++M+N
Sbjct: 18 TSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWN 77
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
TIIR A S P A+ ++ QM S+ P+K+TF+F LK+C G +HG ++K
Sbjct: 78 TIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKT 137
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
G + F++N+LI+ +A+CG + A L D + DVV+W++L + YA RG + +A LF
Sbjct: 138 GLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLF 197
Query: 195 DEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
DEM R++ SWN MI+GY G +E+A +F E P ++VVSWNAMI+GY G + L
Sbjct: 198 DEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLV 257
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314
+FE+M+ G +PD+ T++S+L+ACA +G L G+ VH +D AL+DMY
Sbjct: 258 LFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVH-AYIDKNGISIDGFVATALVDMY 316
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
+KCGSIE+A+EVF +D+STW+++I GL+ HG + ++ +F EM +P E+TFV
Sbjct: 317 SKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFV 376
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------------------- 411
VL ACS AG ++EG++ F LM + I+P I HYG
Sbjct: 377 CVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQ 436
Query: 412 ----------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
HG+VEL ++LL + ES +V LSN+YAS G W V +V
Sbjct: 437 KEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEV 496
Query: 456 RKLMDDSDIKKQPGCSLIEADDKAF 480
R+ M ++K PGCS+IE D +
Sbjct: 497 RQKMRAQGVRKDPGCSMIEVDGTVY 521
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 187/514 (36%), Positives = 291/514 (56%), Gaps = 42/514 (8%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
+H S L C +L+ LKQ+ A V G ++D +L+ +V +P A++YA ++F+
Sbjct: 4 TQHLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFL 63
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP-NKFTFSFVLKACTRLLYRN 122
PD FM+NT+IRG A+S P +++ + +M + P + F+F+F+LKA
Sbjct: 64 HFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLE 123
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
G +H + + +G + + FV +L+ ++ CG + A +F+ + +VVAW+++
Sbjct: 124 SGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACF 183
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
R G++ A +F+ MP R+L SWNVM+ GY K GE+E A +LF E+P +D VSW+ MI G
Sbjct: 184 RCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVG 243
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
+ G +A F E++ VG RP++V++ L+ACAD G +E GK +H ++ + +
Sbjct: 244 FAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILH-GFIEKSGFLW 302
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREM 361
V NAL+D Y+KCG++ A VF M + R + +W+++I GLA HG+ EE+I +F EM
Sbjct: 303 MVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEM 362
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
+ +RP I F+ +L ACSHAG +E+G +YF M+D YNIEP I HYG
Sbjct: 363 EESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQ 422
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+HG+V+L +RL + + SGD+VLLSNI
Sbjct: 423 LDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNI 482
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
YA G+W V VR+ M D + K PG S+IE D
Sbjct: 483 YAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVD 516
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 195/512 (38%), Positives = 294/512 (57%), Gaps = 51/512 (9%)
Query: 14 KCTNLRTLKQIQA-LVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
KC +L L+QI A ++ N N + R + + + G ++YA +F +I P++F+
Sbjct: 15 KCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFI 74
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF--VLKACTRLLYRNMGFCVHGK 130
+ +I+G + + NP++++ LY +M C + FS VLKAC +LL + G VHG+
Sbjct: 75 FFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQ 134
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++K F+ FV NS++ + + G++ A +FD DVV+W+S+ AGY + GE+ +A
Sbjct: 135 VLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELA 194
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
LFDEMP RDLVS N MI GY K G E A ++F + +DVV+W +MIS YV
Sbjct: 195 SELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPM 254
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKVLH 306
+AL++F EM S+G RPD ++S+L+A ADLG +E GK +H + ++++SG
Sbjct: 255 KALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFI---- 310
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
G+ALIDMY+KCG IE A VF + R++ W+++I GLA HG A E++ +F EM+R+
Sbjct: 311 GSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMD 370
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------- 411
+ P EITF+G+L CSH G VEEG+ YF+ M ++Y I P I+HYG
Sbjct: 371 IEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDA 430
Query: 412 -------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
HG +E+G+ A R + + D+S YVLLSNIYA
Sbjct: 431 LGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKA 490
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G W+ V K+R +M +KK GCS + B K
Sbjct: 491 GRWDDVAKIRLMMRQRGVKKIAGCSSMLVBGK 522
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 191/498 (38%), Positives = 276/498 (55%), Gaps = 43/498 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +KC ++ LKQIQ+ + + G D A LI ++ ++Y + P+T
Sbjct: 56 LLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNT 115
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKC-SIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F +N IRG S+NP +AV LY ++ +C KP+ +T+ + KAC RL MG + G
Sbjct: 116 FSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILG 175
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
++ GF+ + FV N++I+ +CGDL+ A +FD D+V+W+S+ GY G L
Sbjct: 176 HVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYC--GNLES 233
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
AR LFD M + +VSW M+ GYA+ G ++ A +LF+E+P +DVV WNAMI GYV
Sbjct: 234 ARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRG 293
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
K+AL +F EM+++ PD+VTM+S L+AC+ LG L+VG +H ++ V G A
Sbjct: 294 KEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH-HYIEKHELSLNVALGTA 352
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
LIDMYAKCG I +AI+VF + R+ TW+ +I GLA HG A +IA F EM V P
Sbjct: 353 LIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPD 412
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
E+TF+G+L AC H G VEEG+KYF M ++N+ P ++HY
Sbjct: 413 EVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELI 472
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+HG+V +G A +LL M +SG YVLL+N+Y W
Sbjct: 473 KSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWK 532
Query: 451 RVEKVRKLMDDSDIKKQP 468
K RKLM ++K P
Sbjct: 533 EAGKARKLMRQRGVEKTP 550
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 195/531 (36%), Positives = 292/531 (54%), Gaps = 56/531 (10%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
N H +RL +KC+++R LK + A + ++G +++ L +LI +V G + YA +
Sbjct: 110 NVNGSHCPARLCEKCSSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQR 169
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
MF +I +P+ FMYN++IRG + S +P+DAV L+ +M + PN+FT FVLKAC
Sbjct: 170 MFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSA 229
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS---- 176
VHG +K G FV+N+LI + CG ++ A LFD +V+W+S
Sbjct: 230 YWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEI 289
Query: 177 ------------LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANEL 224
L YA+ G L A+++FD +++VSW MI+ YA+ G +E A ++
Sbjct: 290 TGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQI 349
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F+++P ++VVSWN+MIS Y+ G ++AL++F +MR+ PD+ T++S+L AC+ LGDL
Sbjct: 350 FDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDL 409
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
+GKK+H +L L+ N+LIDMYAKCG + A+++FL M +++ +W+ +IG
Sbjct: 410 VMGKKIHNYILSNKGAYGVTLY-NSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGA 468
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
LA HG E+I +F EMQ P EIT G+L ACSH+G V+ G YF M Y +
Sbjct: 469 LALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXR 528
Query: 405 NIRHYG---------------------------------------VHGDVELGRLANKRL 425
I HY +HG+VE+G+ K+L
Sbjct: 529 EIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQL 588
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
L + G YVL+SNIY W V+K+RKLM D IKK S IE D
Sbjct: 589 LELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEID 639
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 191/523 (36%), Positives = 286/523 (54%), Gaps = 45/523 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L KC++L+ KQI A + G ++D +L+ ++ I A++YA ++F PDT
Sbjct: 8 LLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDT 67
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEK-CSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
FM+NT+IR + SQ PL ++ + Q+ + ++ P+ FTF+F LKA + G +H
Sbjct: 68 FMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHS 127
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ ++GF+ + FV +LI +A CGD +A +FD ++ +VV W+++ R G++
Sbjct: 128 QAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEG 187
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
A+ +F MPVR+L SWN M+ GYAK GE+ A +F E+P RD VSW+ MI G+ G
Sbjct: 188 AQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCF 247
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
+A F E+ R ++V++ +L+ACA G E GK +H ++ + NA
Sbjct: 248 DEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILH-GFVEKAGFLYVGSVNNA 306
Query: 310 LIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
LID Y+KCG++ A VF M R + +W+++I GLA HG EE+I +F EM+ VRP
Sbjct: 307 LIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRP 366
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
ITF+ +L ACSH+G VEEG F M++ Y IEP I HYG
Sbjct: 367 DGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEF 426
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+HG++E+ L RL M D SGD+VLLSN+YA G+W
Sbjct: 427 ICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKW 486
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPN 492
V +R+ M + +KK PG S+IE D + Y F KPN
Sbjct: 487 KDVSSIRRTMTEHSMKKTPGWSMIEIDK---VIYGFVAGEKPN 526
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 184/506 (36%), Positives = 282/506 (55%), Gaps = 41/506 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L+ KC +LRT+KQIQAL+ NS +L+ +V +P +++YA ++F+ I PD
Sbjct: 11 LFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDV 70
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMGFCVHG 129
FMYNT+IRG + S P +A+ L+ +M + S+ P+ F+F+F+LKA G +H
Sbjct: 71 FMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHC 130
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
V YG + + FV +LI +A C L A +FD + ++VAW+++ A R +
Sbjct: 131 LAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKD 190
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
A +F MP+R+L SWN+M+ GY K GE++ A E+F ++P +D VSW+ MI G+ G
Sbjct: 191 AEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNF 250
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
A F E+R G RP++V++ +L+ACA G E G+ +H ++ + + + NA
Sbjct: 251 NDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILH-GFVEKSGFLQIISVNNA 309
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
LID Y+KCG+++ A VF M R +W+ +I G+A HG+ EE+I +F EM+ ++P
Sbjct: 310 LIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPD 369
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
ITF+ +L ACSHAG V+ G YF M + Y IEP I HYG
Sbjct: 370 SITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFV 429
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+HG++ L ++L + + SGD+VLLSNIYA G+W
Sbjct: 430 CQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWK 489
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEAD 476
V +R+ M +KK PG S+IE +
Sbjct: 490 DVAALRRSMTHQRLKKTPGWSMIEVN 515
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 195/580 (33%), Positives = 297/580 (51%), Gaps = 109/580 (18%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H S L C + + LKQI + + G ++ AL +LI ++ G ++YA +F I
Sbjct: 33 HPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+P+ F++NT+IRG++ S +P+ A+ Y +M C ++PN +TF F+LK+C ++ G
Sbjct: 93 EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD--------------------- 164
+HG ++K G E + FV SLI +A G+L A ++F
Sbjct: 153 QIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG 212
Query: 165 --GDAKM--------DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV----------- 203
DA+ D V+W+++ AGYA+ G A + F EM ++
Sbjct: 213 CLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLS 272
Query: 204 ---------------SW-------------NVMITGYAKQGEMEKANELFNEVPKRDVVS 235
SW N +I Y+K G+++KA +LF + ++D++S
Sbjct: 273 ACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIIS 332
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WN MI GY K+AL +F +M+ P+DVT +S+L ACA LG L++GK +H +
Sbjct: 333 WNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYID 392
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
G+ +LIDMYAKCG+IE A +VF GM+ + + +W+ +I GLA HG A ++
Sbjct: 393 KKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMAL 452
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
+FR+M+ P +ITFVGVL ACSHAG VE G++ F M ++Y+I P ++HYG
Sbjct: 453 ELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDL 512
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
VHG+VELG A K L + + G Y
Sbjct: 513 LGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAY 572
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
VLLSNIYA+ G W+ V ++R ++D +KK PGCS IE D
Sbjct: 573 VLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVD 612
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 343 bits (881), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 183/504 (36%), Positives = 284/504 (56%), Gaps = 44/504 (8%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C +L T KQI A V G SD +L++ ++ + +++YA ++F PD FM+N
Sbjct: 15 CKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHN 74
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKP-NKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
T+IRG +S P D++ + +M + S P + F+F+F++KA L +G +H + +
Sbjct: 75 TLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALV 134
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+G + + FV +LI + CG + A +FD + + +AW+++ R G++ R L
Sbjct: 135 HGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGREL 194
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FD MPVR+L+SWNVM+ GY K GE+E A E+F E+P +D VSW+ MI G+ G ++A
Sbjct: 195 FDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAF 254
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALID 312
F E++ G RP++ ++ +L+ACA G LE GK +H + SG+A ++ NAL+D
Sbjct: 255 SFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFI--EKSGLAWIVSVNNALLD 312
Query: 313 MYAKCGSIERAIEVFLG-MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
Y+KCG++ A VF M +R++ +W++++ LA HG EE+I +F +M+ +RP EI
Sbjct: 313 TYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEI 372
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
F+ +L ACSHAG VE+G +YF M+ YNIEP+I HYG
Sbjct: 373 AFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQ 432
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+HGDV+L +RL + + S D+VLLSN YA G+W
Sbjct: 433 MPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDA 492
Query: 453 EKVRKLMDDSDIKKQPGCSLIEAD 476
VR+ M + I K PG S+IE D
Sbjct: 493 ASVRRSMTEQRITKTPGWSMIEVD 516
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 201/602 (33%), Positives = 305/602 (50%), Gaps = 111/602 (18%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
H S +L KC ++RT KQI A + G ++ AL +LI +V G I+YA +F
Sbjct: 28 QEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFN 87
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
I EP+ F++N++IRG + S +P A+ + +M ++PN +TF F+LK+C +L +
Sbjct: 88 SIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHE 147
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G +H ++K GF + F+ SLI +A G++N A ++FD D +++++L AGYA
Sbjct: 148 GKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYAL 207
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV--------- 234
G + AR LFDEMPV+D+VSWN MI GYA+ G ++A LF ++ K +V
Sbjct: 208 WGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSV 267
Query: 235 -----------------SW-------------NAMISGYVLCG----------------- 247
SW NA+I Y CG
Sbjct: 268 LSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDV 327
Query: 248 --------------MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
K+AL +F EM + G P ++T LS+L +CA LG +++GK +H
Sbjct: 328 ISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIH-A 386
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
++ +LID+YAKCG+I A +VF GM+ + +++W+ +I GLA HG A++
Sbjct: 387 YINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADK 446
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-- 411
+ +F +M + P EITFVG+L AC HAG V+ G+++F M +Y I P +HYG
Sbjct: 447 AFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMI 506
Query: 412 -------------------------------------HGDVELGRLANKRLLNMRKDESG 434
HG VELG L +RL + D G
Sbjct: 507 DLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPG 566
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSG 494
YVLLSNIYA G+W+ V ++R ++D +KK PGC+ IE D+ ++L K P S
Sbjct: 567 AYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVH-EFLVGDKVHPQSE 625
Query: 495 NL 496
++
Sbjct: 626 DI 627
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 204/536 (38%), Positives = 288/536 (53%), Gaps = 92/536 (17%)
Query: 1 NRTNRHRSSRLWKK-----CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAI 55
N T ++ LW C ++ LKQ+ A + D A EL+ +V +
Sbjct: 2 NSTIFTSTTSLWPPSSFFPCKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDL 61
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKA 114
+YA K+F + P+ F YNT+IR ++S +P DA+ ++ +M E CS++PN FTF V KA
Sbjct: 62 DYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKA 121
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF---------DG 165
C R G VHG VK+G + + FV ++++ + +CG + A LF DG
Sbjct: 122 CGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDG 181
Query: 166 --DAKM----DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
D K DVV W+ + GY R GEL +AR+LFDEMP R +VSWNVMI GYA+ G
Sbjct: 182 IRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF- 240
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
K+A+E+F EM+ P+ VT++S+L A +
Sbjct: 241 ------------------------------KEAVEVFREMQMAEVPPNYVTLVSVLPAMS 270
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
LG LE+GK VH + GV VL G+ALIDMYAKCGSIE+A++VF G+ R+V TWS
Sbjct: 271 RLGALELGKWVHLYAVRNNIGVDDVL-GSALIDMYAKCGSIEKALQVFEGLPKRNVVTWS 329
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
T+I GLA HG A++++ F +M+R V P+++T++G+L ACSHAG V EG+ +F M
Sbjct: 330 TIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRV 389
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
+EP I HYG +HG+VE+G+
Sbjct: 390 SGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKR 449
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ L+ + +SG YV LSNIYAS G W V KVR +M + D++K PGCS IE D
Sbjct: 450 VAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELD 505
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 187/501 (37%), Positives = 282/501 (56%), Gaps = 43/501 (8%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+R LK + A + ++G +++ L +LI +V G + YA +MF +I +P+ FMYN++I
Sbjct: 1 MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
RG + S +P+DAV L+ +M + PN+FT FVLKAC VHG +K G
Sbjct: 61 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDG---DAKMDVVAWSSLTAGYARRGELSMARSLF 194
FV+N+LI + CG ++ A LFD +D++ ++L YA+ G L A+++F
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIF 180
Query: 195 DEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
D +++VSW MI+ YA+ G +E A ++F+++P ++VVSWN+MIS Y+ G ++AL+
Sbjct: 181 DRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALD 240
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314
+F +MR+ PD+ T++S+L AC+ LGDL +GKK+H +L L+ N+LIDMY
Sbjct: 241 LFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLY-NSLIDMY 299
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
AKCG + A+++FL M +++ +W+ +IG LA HG E+I +F EMQ P EIT
Sbjct: 300 AKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLT 359
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
G+L ACSH+G V+ G YF M Y + I HY
Sbjct: 360 GLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPM 419
Query: 411 ---------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
+HG+VE+G+ K+LL + G YVL+SNIY W V+K+
Sbjct: 420 KPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKI 479
Query: 456 RKLMDDSDIKKQPGCSLIEAD 476
RKLM D IKK S IE D
Sbjct: 480 RKLMIDRGIKKGRAISSIEID 500
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 197/549 (35%), Positives = 294/549 (53%), Gaps = 76/549 (13%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+R R L + C + + QIQA + NGF + +L+ + + + YA +
Sbjct: 34 HRLLEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATL--KRMTYARQ 91
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I +P+ ++N++ RG AQS++ + VFL+ QM+ I+PN FTF VLK+C ++
Sbjct: 92 LFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINA 151
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCG-------------------------- 154
G VH ++K GF N FV +LI ++ G
Sbjct: 152 LIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMING 211
Query: 155 -----DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMI 209
DL +A LFD + DVV W+ + +GY G++ AR LF EMP RD++ WN ++
Sbjct: 212 YILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVL 271
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDD 268
GYA G +E LF E+P+R++ SWNA+I GY G+ + L F+ M S + P+D
Sbjct: 272 KGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPND 331
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVF 327
T++++L+ACA LG L++GK VH + +SG+ V GNAL+DMYAKCG IE AI VF
Sbjct: 332 ATLVTVLSACARLGALDLGKWVH--VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVF 389
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
GM +D+ +W+TLIGGLA H +++ +F +M+ +P ITF+G+L AC+H G VE
Sbjct: 390 RGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVE 449
Query: 388 EGKKYFKLMRDEYNIEPNIRHYG------------------------------------- 410
+G YF+ M D+Y I P I HYG
Sbjct: 450 DGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGA 509
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
++ +VEL LA +RL+ + +YV+LSNIY G W V +++ M D+ KK P
Sbjct: 510 CRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLP 569
Query: 469 GCSLIEADD 477
GCSLIE +D
Sbjct: 570 GCSLIEVND 578
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 195/544 (35%), Positives = 294/544 (54%), Gaps = 79/544 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
+ ++C +R L +I A + L+ S ++++P +++YA +F +I EPD+
Sbjct: 30 ILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDS 89
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
YN +IRG Q+P +A+ L+ +M + S++P++FTF +LK C+RL + G +H
Sbjct: 90 PAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHAL 149
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
I+K GF + FV+N+LI+ +ANCG++ A +FD ++ +V W+S+ AGY + G
Sbjct: 150 IMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEV 209
Query: 191 RSLFDEMPVRD-------LVS---------------W-----------------NVMITG 211
LF EM D LVS W ++
Sbjct: 210 VKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDM 269
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
YAK G+++ A LF+++ +RDVV+W+AMISGY ++AL++F EM+ P+++TM
Sbjct: 270 YAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITM 329
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
+S+L++CA LG LE GK VH + + L G AL+D YAKCGS+E +IEVF M
Sbjct: 330 VSILSSCAVLGALETGKWVHFFIKKKRMKLTVTL-GTALMDFYAKCGSVESSIEVFGKMP 388
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
++V +W+ LI GLA +G ++++ F M V P ++TF+GVL ACSHAG V+EG+
Sbjct: 389 VKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRD 448
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
F M ++ IEP I HYG VH
Sbjct: 449 LFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
+VE+G + K+L+ + SGDY+LLSNIYAS G W KVR M + IKK PGCSL
Sbjct: 509 KNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSL 568
Query: 473 IEAD 476
IE D
Sbjct: 569 IELD 572
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 183/502 (36%), Positives = 283/502 (56%), Gaps = 44/502 (8%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C NLR L QI +G ++DS + +LI ++ I A+ YA ++ + EPD FM+N
Sbjct: 182 CKNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFN 241
Query: 75 TIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
T++RG ++S P ++V ++ +M K I P+ F+F+FV+KA GF +H + +K
Sbjct: 242 TLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALK 301
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+G + + FV +LI + CG + A +FD + ++VAW+++ R ++S AR +
Sbjct: 302 HGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREI 361
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FD+M VR+ SWNVM+ GY K GE+E A +F+E+P RD VSW+ MI G+ G ++
Sbjct: 362 FDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESF 421
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALID 312
F E+ RP++V++ +L+AC+ G E GK +H + SG + ++ NALID
Sbjct: 422 SYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFV--EKSGYSWIVSVNNALID 479
Query: 313 MYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
MY++CG++ A VF GM++ R + +W+++I GLA HG EE+I +F EM V P EI
Sbjct: 480 MYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEI 539
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------------- 411
+F+ +L ACSHAG ++EG+ YF M+ Y+IEP + HYG
Sbjct: 540 SFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQ 599
Query: 412 -------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
HG++EL +RL + + SGD VLLSN+YA+ G+W V
Sbjct: 600 MPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDV 659
Query: 453 EKVRKLMDDSDIKKQPGCSLIE 474
+RK M IKK SL+E
Sbjct: 660 ASIRKSMIVQRIKKITAWSLVE 681
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 194/537 (36%), Positives = 290/537 (54%), Gaps = 76/537 (14%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C + + QIQA + NGF + +L+ + + + YA ++F +I +P+ +
Sbjct: 109 RSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATL--KRMTYARQLFDQIPDPNIAL 166
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N++ RG AQS++ + VFL+ QM+ I+PN FTF VLK+C ++ G VH ++
Sbjct: 167 WNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLI 226
Query: 133 KYGFEFNRFVRNSLIYFHANCG-------------------------------DLNTASV 161
K GF N FV +LI ++ G DL +A
Sbjct: 227 KCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARR 286
Query: 162 LFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA 221
LFD + DVV W+ + +GY G++ AR LF EMP RD++ WN ++ GYA G +E
Sbjct: 287 LFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEAL 346
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACAD 280
LF E+P+R++ SWNA+I GY G+ + L F+ M S + P+D T++++L+ACA
Sbjct: 347 EGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACAR 406
Query: 281 LGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
LG L++GK VH + +SG+ V GNAL+DMYAKCG IE AI VF GM +D+ +W+
Sbjct: 407 LGALDLGKWVH--VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWN 464
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
TLIGGLA H +++ +F +M+ +P ITF+G+L AC+H G VE+G YF+ M D+
Sbjct: 465 TLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADD 524
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y I P I HYG ++ +VEL L
Sbjct: 525 YLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAEL 584
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
A +RL+ + +YV+LSNIY G W V +++ M D+ KK PGCSLIE +D
Sbjct: 585 ALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVND 641
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/503 (36%), Positives = 265/503 (52%), Gaps = 72/503 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L+ C LR LKQ+ A + I NS S P + YA +F + P
Sbjct: 73 LFNPCKTLRHLKQVHAQI-ITHHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPP 131
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+YN++IR + S+ PL+A+ LY M + +KP+ T+ FV+KAC G VH
Sbjct: 132 SLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTH 191
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+VK GFE + ++ +SLI+ +AN DL A LF+ + DVV+W+++ GY + E+ A
Sbjct: 192 VVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHA 251
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +FD M RD++SWN MI GYA +CG
Sbjct: 252 RMVFDRMVCRDVISWNTMINGYA-------------------------------ICGKPN 280
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+AL +F++MR+VG +P + T++SLL+ACA LG L+ G +H + D V ++ G AL
Sbjct: 281 EALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIV-GTAL 339
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMYAKCG I A +VF M +DV W+T+I G+A HG +E+ +F+EM+ V P +
Sbjct: 340 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPND 399
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
ITFV +L ACSHAG V+EG+K M Y IEP + HYG
Sbjct: 400 ITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIG 459
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+HG+ ELG + KRL+N++ SG Y+LLSNIYA+ +W+
Sbjct: 460 TMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDD 519
Query: 452 VEKVRKLMDDSDIKKQPGCSLIE 474
KVR LM + I K PG S+IE
Sbjct: 520 ARKVRNLMKVNGISKVPGVSVIE 542
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 193/529 (36%), Positives = 291/529 (55%), Gaps = 53/529 (10%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSD----SSALRELIYSGSVVIPGAINYAHKMFVKIT 66
L + T L + QI AL+ + + + LR L S + YA +F +I
Sbjct: 9 LLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSA---NDLLYARSVFDEIP 65
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRLLYRNMG 124
PDTF++NT+IR SQNP +++ L+ QM ++C I + ++ S V++AC RL G
Sbjct: 66 SPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQEC-IPIDSYSLSLVIQACGRLKDPGNG 124
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H +++K G + FV +LI +A GD+ A + D A D+V ++ L A Y R
Sbjct: 125 QKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRV 184
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
GE+++A LFD MP RDLVSWN MI G+A G++ A +LF+ +RD++SW++MI+ Y
Sbjct: 185 GEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYA 244
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH-CTLLDMTSGVAK 303
+ +AL +F EM+ PD VTM+S+L+AC D+G L +GK +H C + K
Sbjct: 245 KARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLK 304
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
+ G +L+DMYAKCG I+ ++ VF GM +RDV WS +I GLA HGF E ++ F +M
Sbjct: 305 L--GTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMIS 362
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
++P ++TF+GVL ACSH G V+EG YF M Y++ P I HYG
Sbjct: 363 EDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQ 422
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
++ +VE+ A LL + G+YVLLSNIY+
Sbjct: 423 EAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYS 482
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
EW++V VR++M + +I+K PG S IE D+ A +++ + P S
Sbjct: 483 QAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDN-AVHEFVAGDQSHPES 530
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 193/513 (37%), Positives = 275/513 (53%), Gaps = 71/513 (13%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
R L +C + +KQIQ+ +T++G D A +I +V G I++A+ +F+ +
Sbjct: 15 RVLSLLDQCVTMAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLP 74
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
+F++NT++R + P + LY M PN +TFSF+L+AC +L + G
Sbjct: 75 RRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGIL 134
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H + V+ G+E FV+N L++ +A+C +++A LFDG DVV W+++ GYA+ G+
Sbjct: 135 LHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQ 194
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ +AR LFDEMP ++ VSW+ MITGYA+ G LF E
Sbjct: 195 VVVARQLFDEMPEKNAVSWSAMITGYAQIG-------LFRE------------------- 228
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
ALE+F +M+ G RP+ ++ LTACA LG L+ G+ +H +D V +
Sbjct: 229 -----ALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIH-AYVDRNRMVLDRIL 282
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
G ALIDMYAKCG +E A VF M DRDV +++LI GLA HG + +I MF MQ V
Sbjct: 283 GTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGV 342
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------- 410
P E+TF+ +L ACS G VEEG + FK M + Y IEP ++HYG
Sbjct: 343 CPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAK 402
Query: 411 -----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
VHGDVELG+ + L D G +VLLSN+YAS
Sbjct: 403 RVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASAN 462
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
+W V KVRK M++ +KK PGCSLIE D F
Sbjct: 463 QWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVF 495
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 189/516 (36%), Positives = 283/516 (54%), Gaps = 42/516 (8%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
++ + +++ + C + LK+I A + I G D+ + + S +V I+YA
Sbjct: 23 SKNSNYKTLSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVSARN-IDYAFW 81
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+FV I PD++ + T+IRG +++NP A+ Y M + ++ NKFTF FVLKA
Sbjct: 82 VFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPS 141
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
G VHGK+VK GF ++ F RN+LI+ + CG + A +LFD +VV W+++ G
Sbjct: 142 YQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITG 201
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
G+ AR LF EMP R++ SWN ++ GY+K G ++ A LF+ +P+RDVVSW +MI
Sbjct: 202 CFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMI 261
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
S YV G +ALE+F+EM G D + + S+L+ACA +G L++G+ +H + +
Sbjct: 262 SAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIH-AYMKRSKL 320
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
V AL+DMYAKCG I+ A VF M +++ +W+ ++ GLA HG ++ +F++
Sbjct: 321 RNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQ 380
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M+ V P +ITFV VL ACSH G VEEG K F M E+NI P + HYG
Sbjct: 381 MESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQG 440
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
VHG +G + + ++ G YVLLSN
Sbjct: 441 LINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSN 500
Query: 442 IYASRGEWNRVEKVRKLMDDSDI-KKQPGCSLIEAD 476
I+A++ +WN VEK RK+M + KK PG S IE D
Sbjct: 501 IFAAKSQWNEVEKTRKMMKQMGVEKKIPGYSSIELD 536
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/510 (36%), Positives = 279/510 (54%), Gaps = 42/510 (8%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H L C NLR L QI L G ++DS +LI ++ I A+ YA ++ +
Sbjct: 6 HHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCF 65
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMG 124
EPD FM+NT++RG ++S P ++V ++ +M K + P+ F+F+FV+KA G
Sbjct: 66 PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 125
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
F +H + +K+G E + FV +LI + CG + A +FD + ++VAW+++ R
Sbjct: 126 FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+++ AR +FD+M VR+ SWNVM+ GY K GE+E A +F+E+P RD VSW+ MI G
Sbjct: 186 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 245
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G ++ F E++ G P++V++ +L+AC+ G E GK +H ++ V
Sbjct: 246 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILH-GFVEKAGYSWIV 304
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
NALIDMY++CG++ A VF GM++ R + +W+++I GLA HG EE++ +F EM
Sbjct: 305 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTA 364
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------ 411
V P I+F+ +L ACSHAG +EEG+ YF M+ Y+IEP I HYG
Sbjct: 365 YGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQ 424
Query: 412 ---------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
HG++EL +RL + + SGD VLLSN YA
Sbjct: 425 KAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYA 484
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ G+W V +RK M IKK SL+E
Sbjct: 485 TAGKWKDVASIRKSMIVQRIKKTTAWSLVE 514
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 195/535 (36%), Positives = 292/535 (54%), Gaps = 89/535 (16%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
NR+ +S K C + LK+I A V + + + +++ S + G ++YA +F
Sbjct: 11 NRYITSL--KNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNL--GHVSYATLLFK 66
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM---EKCSIKPNKFTFSFVLKACTRLLY 120
++ P+ F YN IIR A +++ A+ ++ QM S+ P+KFTF FV+K+CT +L
Sbjct: 67 QLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILC 126
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+G VHG + K+G +F+ N+LI D+
Sbjct: 127 HRLGMQVHGLVYKFGADFHCITENALI-------DM------------------------ 155
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
Y + G+L+ A +F+EM RD++SWN +I GY K G+M A ELF+++P R +VSW MI
Sbjct: 156 YTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMI 215
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+GY G AL++F EM+ VG PD+++++++L ACA LG LEVGK +H D
Sbjct: 216 TGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIH-MYADKNGF 274
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ K NALI+MYAKCG I+ A +F + ++DV +WST+IGGLA HG E+I +F E
Sbjct: 275 LRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEE 334
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M +++V P EITF+GVL+ACSH G +EG KYF +M Y+IEP I HYG
Sbjct: 335 MCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSG 394
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
+H ++++ +A K+L+ + +ESG+YVLL+N
Sbjct: 395 CLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLAN 454
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA-----------DDKAFLQYLF 485
+YA G+W V +RKL+ + IKK PG S IE D K F Q +F
Sbjct: 455 MYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNVVQEFVSSDDSKPFSQEVF 509
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 183/505 (36%), Positives = 278/505 (55%), Gaps = 42/505 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L C NLR L QI L G ++DS +LI ++ I A+ YA ++ + EPD
Sbjct: 3 LLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDA 62
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
FM+NT++RG ++S P ++V ++ +M K + P+ F+F+FV+KA GF +H
Sbjct: 63 FMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHC 122
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ +K+G E + FV +LI + CG + A +FD + ++VAW+++ R +++
Sbjct: 123 QALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAG 182
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
AR +FD+M VR+ SWNVM+ GY K GE+E A +F+E+P RD VSW+ MI G G
Sbjct: 183 AREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSF 242
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
++ F E++ G P++V++ +L+AC+ G E GK +H ++ V NA
Sbjct: 243 NESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILH-GFVEKAGYSWIVSVNNA 301
Query: 310 LIDMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
LIDMY++CG++ A VF GM++ R + +W+++I GLA HG EE++ +F EM V P
Sbjct: 302 LIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTP 361
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------------- 411
I+F+ +L ACSHAG +EEG+ YF M+ Y+IEP I HYG
Sbjct: 362 DGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDF 421
Query: 412 ----------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
HG++EL +RL + + SGD VLLSN YA+ G+W
Sbjct: 422 ICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKW 481
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIE 474
V +RK M IKK SL+E
Sbjct: 482 KDVASIRKSMIVQRIKKTTAWSLVE 506
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 183/503 (36%), Positives = 274/503 (54%), Gaps = 40/503 (7%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
K T+L LKQ+ A+ G D L+ + +N+A K+F + P+ F+
Sbjct: 38 KSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFV 97
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N II+G Q+ P A+ Y +M +PNKFT+ + KACT G VH ++
Sbjct: 98 FNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVI 157
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K G + +R++ I + + G++ A + D DV+ ++++ GY + GE+ A+
Sbjct: 158 KQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKE 217
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
LF M +++ SWNVM++G AK G +E+A ELFNE+ +++ +SW+AMI GY+ G K+A
Sbjct: 218 LFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEA 277
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
LE+F M+ RP + S+L ACA+LG L+ G+ +H + + ++ VL G AL+D
Sbjct: 278 LEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVL-GTALVD 336
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCG ++ A +VF M ++V TW+ +I GL HG AE++I +F +MQ+ K RP IT
Sbjct: 337 MYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGIT 396
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------------- 411
+GVL AC+H+G V+EG + F M + Y IEP + HYG
Sbjct: 397 LLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSM 456
Query: 412 ------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
HGDVELG K LL + SG Y LLSNIYA G W+ V
Sbjct: 457 PMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVA 516
Query: 454 KVRKLMDDSDIKKQPGCSLIEAD 476
VRKLM + +K G S+I+ D
Sbjct: 517 NVRKLMKERGVKTSTGISMIDFD 539
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 184/523 (35%), Positives = 282/523 (53%), Gaps = 76/523 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L K+C+NL+ L Q + G + D+ L I + S + G +Y+H +F T PD
Sbjct: 47 LLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSL--GFSHYSHSIFTHKTRPDI 104
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++YNTII+ + + +A+ LY ++ ++ + ++ FVLKA RLL ++G +H +
Sbjct: 105 YLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQ 164
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+ G + V +LI +++CG + S A
Sbjct: 165 AIGTGLVSDIHVVTALIQMYSSCGCV-------------------------------SEA 193
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R LFD + RD+ WN M+ GYAK G+++ A LF +P+R+V+SW A+I+GY
Sbjct: 194 RQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPN 253
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNA 309
+A+ MF M+ PD++ ML+ L+ACA LG LE+G+ +H +D G++K++ NA
Sbjct: 254 EAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIH-NYID-KHGLSKIVPLNNA 311
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
LIDMYAKCG IE+A+EVF M + V TW+++I GLA HG E++ MF M+R +++P
Sbjct: 312 LIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPN 371
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
EITFV +L AC H G VE G+ YFK M +Y I+P I+HYG
Sbjct: 372 EITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELV 431
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+HGD ELG+ A + L+ + SG+Y LLSNIYA++ +WN
Sbjct: 432 RGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWN 491
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
VRK+M D+ +KK PG S IE +++ +++ K P S
Sbjct: 492 EAGMVRKVMRDTGVKKMPGGSCIEVNNRVH-EFVAGDKLHPQS 533
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 184/523 (35%), Positives = 282/523 (53%), Gaps = 76/523 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L K+C+NL+ L Q + G + D+ L I + S + G +Y+H +F T PD
Sbjct: 47 LLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSL--GFSHYSHSIFTHKTRPDI 104
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++YNTII+ + + +A+ LY ++ ++ + ++ FVLKA RLL ++G +H +
Sbjct: 105 YLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQ 164
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+ G + V +LI +++CG + S A
Sbjct: 165 AIGTGLVSDIHVVTALIQMYSSCGCV-------------------------------SEA 193
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R LFD + RD+ WN M+ GYAK G+++ A LF +P+R+V+SW A+I+GY
Sbjct: 194 RQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPN 253
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNA 309
+A+ MF M+ PD++ ML+ L+ACA LG LE+G+ +H +D G++K++ NA
Sbjct: 254 EAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIH-NYID-KHGLSKIVPLNNA 311
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
LIDMYAKCG IE+A+EVF M + V TW+++I GLA HG E++ MF M+R +++P
Sbjct: 312 LIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPN 371
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
EITFV +L AC H G VE G+ YFK M +Y I+P I+HYG
Sbjct: 372 EITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELV 431
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+HGD ELG+ A + L+ + SG+Y LLSNIYA++ +WN
Sbjct: 432 RGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWN 491
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
VRK+M D+ +KK PG S IE +++ +++ K P S
Sbjct: 492 EAGMVRKVMRDTGVKKMPGGSCIEVNNRVH-EFVAGDKLHPQS 533
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 185/536 (34%), Positives = 281/536 (52%), Gaps = 72/536 (13%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+ +N ++ L ++C+N+ L+QI + G D +L+ + G++ YA
Sbjct: 14 SESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYART 73
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I P+TFM+NT+IRG + S+ P +A+ LY M S+ N +TF F+LKAC+ +
Sbjct: 74 VFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSA 133
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+H I+K GF + NSL LN
Sbjct: 134 LEETQQIHAHIIKMGFGSEIYTTNSL---------LNV---------------------- 162
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
Y++ G++ AR LFD++ RD VSWN MI GY K GE+E A E+FN +P+R+++SW +MI
Sbjct: 163 YSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMI 222
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
SG V G K+AL +F M++ G + D+V ++S L ACADLG L+ GK +H +
Sbjct: 223 SGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIE 282
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ +L G LIDMYAKCG +E AIEVF M ++ VS W+ +I G A HG E++ F +
Sbjct: 283 IDPIL-GCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMK 341
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
MQ V P ++TF G+L ACSHAG V E K F+ M + +P+I HYG
Sbjct: 342 MQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAG 401
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
+HG++ELG+ K L+ + G Y+ L++
Sbjct: 402 LLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLAS 461
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLD 497
I+A+ GEWN+ +VR+ M + + K PGCS+I + A ++L + P +D
Sbjct: 462 IHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAH-EFLAGDESHPQIKEID 516
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 191/503 (37%), Positives = 279/503 (55%), Gaps = 48/503 (9%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG---AINYAHKMFVKITEPDTFM 72
T+L LKQ AL+ G DS L+ S + V + + ++F + +P+ F+
Sbjct: 45 TSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFL 104
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I+ ++ P A+ LY +M +PNK+T+ VLKAC+ G VH +V
Sbjct: 105 WNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLV 164
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTAS-VLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
K+G + + +S I +A+ G L A +L D ++D V W+++ GY R GE+ AR
Sbjct: 165 KHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAAR 224
Query: 192 SLFDEMPVRDLVS-WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
LF+ MP R ++S WN MI+G+++ G +E A E F+E+ +RD +SW+AMI GY+ G
Sbjct: 225 ELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFM 284
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ALE+F +M+ RP + S+L+ACA+LG L+ G+ +H + + VL G +L
Sbjct: 285 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVL-GTSL 343
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMYAKCG I+ A EVF M +++VS+W+ +IGGLA HG AE++I +F +M + P E
Sbjct: 344 VDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNE 400
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------------- 411
ITFVGVL AC+H G V++G F MR EY +EP I HYG
Sbjct: 401 ITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVS 460
Query: 412 --------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
HG+VELG K LL + SG Y LLSNIYA G W
Sbjct: 461 SIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEE 520
Query: 452 VEKVRKLMDDSDIKKQPGCSLIE 474
V +VRKLM + IK PG S+I+
Sbjct: 521 VGEVRKLMKERGIKTTPGTSIID 543
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 191/503 (37%), Positives = 279/503 (55%), Gaps = 48/503 (9%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG---AINYAHKMFVKITEPDTFM 72
T+L LKQ AL+ G DS L+ S + V + + ++F + +P+ F+
Sbjct: 46 TSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFL 105
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I+ ++ P A+ LY +M +PNK+T+ VLKAC+ G VH +V
Sbjct: 106 WNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLV 165
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTAS-VLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
K+G + + +S I +A+ G L A +L D ++D V W+++ GY R GE+ AR
Sbjct: 166 KHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAAR 225
Query: 192 SLFDEMPVRDLVS-WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
LF+ MP R ++S WN MI+G+++ G +E A E F+E+ +RD +SW+AMI GY+ G
Sbjct: 226 ELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFM 285
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ALE+F +M+ RP + S+L+ACA+LG L+ G+ +H + + VL G +L
Sbjct: 286 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVL-GTSL 344
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMYAKCG I+ A EVF M +++VS+W+ +IGGLA HG AE++I +F +M + P E
Sbjct: 345 VDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNE 401
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------------- 411
ITFVGVL AC+H G V++G F MR EY +EP I HYG
Sbjct: 402 ITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVS 461
Query: 412 --------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
HG+VELG K LL + SG Y LLSNIYA G W
Sbjct: 462 SIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEE 521
Query: 452 VEKVRKLMDDSDIKKQPGCSLIE 474
V +VRKLM + IK PG S+I+
Sbjct: 522 VGEVRKLMKERGIKTTPGTSIID 544
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 181/515 (35%), Positives = 285/515 (55%), Gaps = 55/515 (10%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
++ ++++ ++Q Q L+T +G + + ++I S+ G++ YA +F + F+
Sbjct: 120 QQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTAMDNPFV 179
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG-------- 124
NT+IR A+S P+ A++LY M + IK + FT+ F LKAC R+L+ N G
Sbjct: 180 CNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIKCTQLD 239
Query: 125 -FC----VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
C +H ++ + G + + F++NSL+Y ++ CG L+ A +FD + + +W+ + +
Sbjct: 240 IACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSWNVMIS 299
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
Y + + A SL MP +++VSWN++I Y + G++E A +F E+P+RD VSWN+M
Sbjct: 300 AYDQINDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSM 359
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
I+GYV +AL +F EM D+T++S+L ACA+ G LE+G+K+H +L
Sbjct: 360 IAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREY 419
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ L NAL+DMYAKCG + A EVF ++ + +S W+ +I LA HG+ EE++ +F
Sbjct: 420 KIEGYL-SNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFS 478
Query: 360 --EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------- 410
EM RP +TF+GVL+ACSH G V+EG+ +F M +EY I P+I+HYG
Sbjct: 479 TMEMSVDGARPNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLS 538
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
VH V+L + ++L M GDYVL
Sbjct: 539 RCGLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVL 598
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
LSNIYA WN VE+VR M S + K+PG S I
Sbjct: 599 LSNIYAEAQRWNDVERVRSEMIGSGVPKKPGSSHI 633
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 190/499 (38%), Positives = 270/499 (54%), Gaps = 71/499 (14%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
+KQIQ+ +T++G D A +I +V G I++A+ +F+ + +F++NT++R
Sbjct: 4 IKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAF 63
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
+ P + LY M PN +TFSF+L+AC +L + G +H + V+ G+E
Sbjct: 64 TDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYD 123
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
FV+N L++ +A+C +++A LFDG DVV W+++ GYA+ G++ +AR LFDEMP +
Sbjct: 124 FVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEK 183
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
+ VSW+ MITGYA+ G LF E ALE+F +M+
Sbjct: 184 NAVSWSAMITGYAQIG-------LFRE------------------------ALELFNDMQ 212
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
G RP+ ++ LTACA LG L+ G+ +H +D V + G ALIDMYAKCG +
Sbjct: 213 IAGFRPNHGAIVGALTACAFLGALDQGRWIH-AYVDRNRMVLDRILGTALIDMYAKCGCV 271
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
E A VF M DRDV +++LI GLA HG + +I MF MQ V P E+TF+ +L AC
Sbjct: 272 ETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSAC 331
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
S G VEEG + FK M + Y IEP ++HYG
Sbjct: 332 SRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYV 391
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
VHGDVELG+ + L D G +VLLSN+YAS +W V KVRK M++
Sbjct: 392 LGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEE 451
Query: 462 SDIKKQPGCSLIEADDKAF 480
+KK PGCSLIE D F
Sbjct: 452 KKVKKVPGCSLIEVDGAVF 470
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 191/585 (32%), Positives = 298/585 (50%), Gaps = 110/585 (18%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H S L C + + LKQI + + G ++ AL +LI ++ G ++YA +F I
Sbjct: 33 HPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+P+ F++NT+IRG++ S +P+ A+ Y +M C ++PN +TF F+LK+C ++ G
Sbjct: 93 EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD--------------------- 164
+HG ++K G E + FV SLI +A G+L A ++F
Sbjct: 153 QIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG 212
Query: 165 --GDAKM--------DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV----------- 203
DA+ D V+W+++ AGYA+ G A + F EM ++
Sbjct: 213 CLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLS 272
Query: 204 ---------------SW-------------NVMITGYAKQGEMEKANELFNEVPKRDVVS 235
SW N +I Y+K G+++KA +LF + ++D++S
Sbjct: 273 ACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIIS 332
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WN MI GY K+AL +F +M+ P+DVT +S+L ACA LG L++GK +H +
Sbjct: 333 WNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYID 392
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
G+ +LIDMYAKCG+IE A +VF GM+ + + +W+ +I GLA HG A ++
Sbjct: 393 KKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMAL 452
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
+FR+M+ P +ITFVGVL ACSHAG VE G++ F M ++Y+I P ++HYG
Sbjct: 453 ELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDL 512
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
VHG+VELG A K L + + G Y
Sbjct: 513 LGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAY 572
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKK-QPGCSLIEADDKAF 480
VLLSNIYA+ G W+ V ++R ++D +KK Q +++ D++F
Sbjct: 573 VLLSNIYATAGRWDDVARIRTKLNDKGMKKXQDIYKMLDEIDQSF 617
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 190/550 (34%), Positives = 284/550 (51%), Gaps = 86/550 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C L QIQA + +G + I + + + G I A ++F K +P+
Sbjct: 28 LLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACARL--GGIRRARRVFDKTAQPNG 85
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+N + RG AQ+ LD V L+ +M + PN FTF V+K+C G VH
Sbjct: 86 ATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCV 145
Query: 131 IVKYGFEFNRFVRNSLIYF---------------------------------HANCGDLN 157
+ K GF+ N FV +LI+ H C D+
Sbjct: 146 VAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMV 205
Query: 158 TASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGE 217
+A LFD + DVV W+ + +GY G++ AR LFD MP RD++SWN +++GYA GE
Sbjct: 206 SARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGE 265
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-----------P 266
+E +LF E+P R+V SWN +I GYV G+ K+ALE F+ M + E P
Sbjct: 266 VESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVP 325
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
+D T++++LTAC+ LGDLE+GK VH + + GNALIDMYAKCG IE+A++V
Sbjct: 326 NDYTVVAVLTACSRLGDLEMGKWVH-VYAESIGYKGNLFVGNALIDMYAKCGVIEKALDV 384
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F G+ +D+ TW+T+I GLA HG +++++F M+R RP +TFVG+L AC+H G V
Sbjct: 385 FDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLV 444
Query: 387 EEGKKYFKLMRDEYNIEPNIRHYG------------------------------------ 410
G +F+ M D+Y+I P I HYG
Sbjct: 445 RNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLG 504
Query: 411 ---VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
++ +VE+ LA +RL+ + + G++V++SNIY G V +++ M D+ +K
Sbjct: 505 ACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKV 564
Query: 468 PGCSLIEADD 477
PGCS+I +D
Sbjct: 565 PGCSVIGCND 574
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 184/538 (34%), Positives = 282/538 (52%), Gaps = 81/538 (15%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV-----IPGAINYAHKMFVKITEPD 69
C + + QI + ++G L++ + +G V P ++ +A +F + EPD
Sbjct: 69 CGSTKEFNQIHTQLIVSGL------LQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPD 122
Query: 70 TFMYNTIIRGSAQSQNPLDAV-FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
F+ NTI+R +P A+ F Y QM + + PN +TF ++K C + G +H
Sbjct: 123 AFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIH 182
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+I+K+GFE + FVRNSLI+ ++ CG + A +F+ + D+V W+S+ GY + GE+
Sbjct: 183 ARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIG 242
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
AR LF+EMP RDL SWN MI GY G+M A +LFN++P RD+VSWN MI GY
Sbjct: 243 AARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQN 302
Query: 249 NKQALEMFEEM-----------------------------RSVGER-PDDVTMLSLLTAC 278
+ A E+F M + +GE P++ T++S+LTAC
Sbjct: 303 MEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLVSVLTAC 362
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
A LG L+ GK +H + + VL AL+ MYAKCG+++ A +VF M +R V +W
Sbjct: 363 AHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSW 422
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+++I G HG A++++ MF +M++ P + TF+ VL AC+H+G + EG YF LMR
Sbjct: 423 NSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRR 482
Query: 399 EYNIEPNIRHYG---------------------------------------VHGDVELGR 419
Y IEP + HYG H + EL
Sbjct: 483 AYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAE 542
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+ KRL+ + + G Y+LLSNIYA+ G+W+ VE VRK+M + + K G S + ++
Sbjct: 543 IVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFSWVHIEE 600
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 174/509 (34%), Positives = 286/509 (56%), Gaps = 54/509 (10%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
L L QI A + ++ S+S + +LI S + +++YA +F P+ F++N +
Sbjct: 52 TLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSL--KSLDYALSIFRCFDHPNLFVFNAL 109
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
IRG A++ +V + M + SI+P++ T FVLK+ L+ +G C+HG ++K G
Sbjct: 110 IRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGL 169
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD----VVAWSSLTAGYARRGELSMARS 192
EF+ FVR SL+ + G+L LFD + + ++ W+ L G + G+LS A S
Sbjct: 170 EFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAAS 229
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
LF+ MP R+ SWN +I G+ + G++++A ELF ++P+++VVSW MI+G+ G +++A
Sbjct: 230 LFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKA 289
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKVLHGN 308
L MF M G RP+D+T++S L AC +G L+VG+++H L + G+ G
Sbjct: 290 LSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGI-----GT 344
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
AL+DMYAKCG+I+ A VF+ + +D+ TWS +I G A HG ++++ F +M+ + P
Sbjct: 345 ALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINP 404
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------------- 411
E+ F+ +L ACSH+G V++G +F+ MR +Y+IEP ++HY +
Sbjct: 405 DEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSF 464
Query: 412 ----------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
H ++E+ L ++LL + G YV LSN+YA+ G W
Sbjct: 465 IQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRW 524
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
VE+VR LM + ++K PG S IE + +
Sbjct: 525 EDVERVRTLMKNRGVEKDPGWSYIEVEGQ 553
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 165/464 (35%), Positives = 274/464 (59%), Gaps = 41/464 (8%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
++YA + ++ P+ F+YN +I+G QS P+ A+ LY QM + ++ P +TF ++KA
Sbjct: 30 MDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKA 89
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C + VHG + + GF+ + FV+ SL+ F+++ G + + +FD + DV AW
Sbjct: 90 CGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAW 149
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+++ +G R G++S A LFD MP R+L +WN +I GYA+ E++ A LFN++P RD++
Sbjct: 150 TTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDII 209
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
SW MI+ Y ++AL +F EM G PD+VTM ++++ACA LG L++GK++H +
Sbjct: 210 SWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYI 269
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
+ + V G+ALIDMYAKCGS++R++ +F +R++++ W+++I GLA HG+AEE+
Sbjct: 270 MQHGFNL-DVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEA 328
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
+AMF +M+R K++P +TFV VL AC+HAG +EEG+K F M +++I P + HYG
Sbjct: 329 LAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVD 388
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
+H ++E+ ++A +L+ + SG
Sbjct: 389 LLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGY 448
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ-PGCSLIEADDK 478
Y LL N+ A W K+R M + ++K+ PG S IE + +
Sbjct: 449 YTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQ 492
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 177/501 (35%), Positives = 284/501 (56%), Gaps = 42/501 (8%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
K T+L+ L Q+ LV +G D L+ + ++A K+F I P+ F+
Sbjct: 41 KSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I+G ++ A++ Y +M +PNKFT+ + KAC+ G +HG +V
Sbjct: 101 WNIVIKGCLENNKLFKAIYFYGRM-VIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K+G + ++++ I+ +A+ G L A +F + DVV W+++ GY + G L A+
Sbjct: 160 KHGIGSDVHIKSAGIHMYASFGRLEDARKMFY-SGESDVVCWNTMIDGYLKCGVLEAAKG 218
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
LF +MPV+++ SWNVMI G AK G + A +LF+E+ +RD +SW++M+ GY+ G K+A
Sbjct: 219 LFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEA 278
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
LE+F++M+ RP + S+L AC+++G ++ G+ VH L + + VL G AL+D
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVL-GTALLD 337
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCG ++ EVF M++R++ TW+ +IGGLA HG AE+++ +F ++Q +++P IT
Sbjct: 338 MYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGIT 397
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
VGVL AC+HAG V++G + F+ MR+ Y ++P + HYG
Sbjct: 398 LVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSM 457
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+HG+ +L K LL + SG YVLLSNIYA G ++ V
Sbjct: 458 PMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVS 517
Query: 454 KVRKLMDDSDIKKQPGCSLIE 474
K+RKLM D IK PG S+++
Sbjct: 518 KIRKLMKDRGIKTVPGVSIVD 538
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 180/511 (35%), Positives = 279/511 (54%), Gaps = 78/511 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
+ K C N+ LK+I A + + S + +++ + G YA+ +F + +P+
Sbjct: 20 ILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHY--GETEYANLLFKGVADPNA 77
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQM-----EKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
F+YN +IR ++ + A+ +Y QM + I P+KFTF FV+K+C L+ ++G
Sbjct: 78 FLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGK 137
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
VHG + K+G + N V NSL+ + C L+ A
Sbjct: 138 QVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDA-------------------------- 171
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+F+EM RD VSWN +I+G+ + G+M +A +F E+ + + SW A++SGY
Sbjct: 172 -----HRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYAR 226
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
G ALE F M+ VG PD+++++S+L CA LG LE+GK +H D + +
Sbjct: 227 IGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIH-IYADKAGFLRNIC 285
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
NALI+MYAKCGSI++ +F M++RDV +WST+I GLA HG A E+I +F+EMQ+ K
Sbjct: 286 VCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAK 345
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------- 411
+ P+ ITFVG+L AC+HAG + EG +YF+ M+ +YNIEP + HYG
Sbjct: 346 IEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQA 405
Query: 412 -------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
HG++++ +A + LL + ++G+YVLLSN+YA
Sbjct: 406 LELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADL 465
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
G+W+ V ++RKLM +KK PGCS IE D+
Sbjct: 466 GKWDGVSRMRKLMRSKSMKKTPGCSSIEVDN 496
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 164/467 (35%), Positives = 264/467 (56%), Gaps = 41/467 (8%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
IN A F + P+ ++N +IRG A+ Y M + ++ P ++FS ++KA
Sbjct: 26 INLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKA 85
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
CT L+ G VHG + K+GF+ + FV+ +LI F++ GD+ + +FD + DV AW
Sbjct: 86 CTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAW 145
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+++ + + R G+++ A LFDEMP +++ +WN MI GY K G E A LFN++P RD++
Sbjct: 146 TTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDII 205
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
SW M++ Y K+ + +F ++ G PD+VTM ++++ACA LG L +GK+VH L
Sbjct: 206 SWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYL 265
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
+ + V G++LIDMYAKCGSI+ A+ VF ++ +++ W+ +I GLA HG+ EE+
Sbjct: 266 V-LQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEA 324
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
+ MF EM+R ++RP +TF+ +L AC+HAG +EEG+++F M +Y I P + HYG
Sbjct: 325 LRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVD 384
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
+H ++E+ +A + L+ + SG
Sbjct: 385 LLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGH 444
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ-PGCSLIEADDKAFL 481
Y LL N+YA WN V K+R M D ++K+ PG S +E + L
Sbjct: 445 YSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTVHL 491
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N I+ + + A F V +V+ +NA+I G V C ++QAL + M
Sbjct: 14 NQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVM 73
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
P + SL+ AC L D G+ VH + + V LI+ Y+ G + +
Sbjct: 74 PTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFD-SHVFVQTTLIEFYSTFGDVGGSRR 132
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
VF M +RDV W+T+I G + +F EM V
Sbjct: 133 VFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNV 173
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 177/501 (35%), Positives = 284/501 (56%), Gaps = 42/501 (8%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
K T+L+ L Q+ ALV +G D L+ + ++A K+F I P+ F+
Sbjct: 41 KSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I+G ++ A++ Y +M +PNKFT+ + KAC+ G +HG +V
Sbjct: 101 WNIVIKGCLENNKLFKAIYFYGRM-VIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K+G + ++++ I +A+ G L A +F + DVV W+++ GY + G L A+
Sbjct: 160 KHGIGSDVHIKSAGIQMYASFGRLEDARKMFY-SGESDVVCWNTMIDGYLKCGVLEAAKG 218
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
LF +MPV+++ SWNVMI G AK G + A +LF+E+ +RD +SW++M+ GY+ G K+A
Sbjct: 219 LFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEA 278
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
LE+F++M+ RP + S+L AC+++G ++ G+ VH L + + VL G AL+D
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVL-GTALLD 337
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCG ++ EVF M++R++ TW+ +IGGLA HG AE+++ +F ++Q +++P IT
Sbjct: 338 MYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGIT 397
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
VGVL AC+HAG V++G + F+ MR+ Y ++P + HYG
Sbjct: 398 LVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSM 457
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+HG+ +L K LL + SG YVLLSNIYA G ++ V
Sbjct: 458 PMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVS 517
Query: 454 KVRKLMDDSDIKKQPGCSLIE 474
K+RKLM + IK PG S+++
Sbjct: 518 KIRKLMKNRGIKTVPGVSIVD 538
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 181/511 (35%), Positives = 276/511 (54%), Gaps = 78/511 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
+ K C N+ LK+I A + + S + +++ + YA+ +F ++ +P+
Sbjct: 20 ILKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNH--HAETEYANLLFKRVADPNA 77
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-----IKPNKFTFSFVLKACTRLLYRNMGF 125
F+YN +IR ++ + A+ +Y QM S I P+KFTF FV+K+C L+ ++G
Sbjct: 78 FLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGK 137
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
VHG + K+G + N V NSL+ + C L+ A
Sbjct: 138 QVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDA-------------------------- 171
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+F+EM RD VSWN +I+G+ + G+M +A +F E+ + + SW A++SGY
Sbjct: 172 -----HKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYAR 226
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
G ALE F M+ VG PD+++++S+L ACA LG LE+GK +H D + +
Sbjct: 227 IGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIH-FYADKAGFLRNIC 285
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
NALI+MYAKCGSI+ +F M +RDV +WST+I GLA HG A E+I +F+EMQ+ K
Sbjct: 286 VCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAK 345
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------- 411
+ P ITFVG+L AC+HAG + EG +YF+ M+ +YNIEP + HYG
Sbjct: 346 IEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQA 405
Query: 412 -------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
H ++E+ +A + LL + ++G+YVLLSN+YA
Sbjct: 406 LELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADL 465
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
G+W+ V ++RKLM +KK PGCS IE D+
Sbjct: 466 GKWDGVSRMRKLMRSKSMKKTPGCSSIEVDN 496
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 182/515 (35%), Positives = 276/515 (53%), Gaps = 69/515 (13%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H + L +C+ + LKQI A + G D + LI + ++ +++YA ++F +I
Sbjct: 36 HPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQI 95
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMG 124
P+ + +NT+IR A S NP ++ ++ +M S P+KFTF F++KA + L G
Sbjct: 96 PHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTG 155
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG---- 180
HG ++K + F+ NSLI+F+A CG+L +F + DVV+W+S+
Sbjct: 156 KAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQG 215
Query: 181 ----------------------------YARRGELSMARSLFDEMPVRDLVSWNVMITGY 212
Y + G + A+ LFD+MP +D+VSW M+ GY
Sbjct: 216 GCPEEALELFQEMETQNSLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGY 275
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDDVTM 271
AK GE + A +F+ +P +D+ +WNA+IS Y CG K+ALE+F E++ S +PD+VT
Sbjct: 276 AKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVT- 334
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
L+ G K++C L +LIDMY KCG +++A+ VF +
Sbjct: 335 ------------LKQGMKLNCHL------------TTSLIDMYCKCGDLQKALMVFHSVE 370
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+DV WS +I GLA HG +++IA+F +MQ KV+P +TF +L ACSH G VEEG+
Sbjct: 371 RKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRT 430
Query: 392 YFKLMRDEYN---IEPNIRHYG-------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
+F M Y + P +G +H +V L A +L+ + G YVLLSN
Sbjct: 431 FFNQMELVYGKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSN 490
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
IYA G+W+RV +RKLM D +KK+PGCS IE D
Sbjct: 491 IYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVD 525
>gi|357477477|ref|XP_003609024.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510079|gb|AES91221.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 544
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 180/529 (34%), Positives = 294/529 (55%), Gaps = 63/529 (11%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF--VK 64
R++ L K +++ LKQ+QA++T +G +S +LI+ ++ G +++A+ +F
Sbjct: 8 RATSLLNKLSSMSELKQLQAIITKSGLHSHIPLTTKLIFFSALSPFGNLSHAYSLFQHSS 67
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR------- 117
I + F+ NT+IR + S PL A+ +Y QM ++ + +T +FVLKAC+R
Sbjct: 68 ILIHNPFISNTMIRAFSHSCFPLQALLIYNQMLINNVVSDSYTCNFVLKACSRAYKLIQE 127
Query: 118 -----------LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
++ N G +H +++K GF+ + V+NSL+YF++ CG ++ A LFD
Sbjct: 128 SGSCDDDDDNLVVVYNKGTEIHCRVIKIGFQNDPSVQNSLLYFYSQCGLVSVARYLFDQI 187
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+V+W+ + + Y R + +A L + MP + ++SWN +I Y + G+++ A +F
Sbjct: 188 KDTSLVSWNIMISAYDRVDDYELADHLLELMPCKTVISWNTLIARYIRLGDVQAARRVFG 247
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+P+R+ VSWN+MI+G V ALE+F EM++ G +P +VT++S+L ACA+ G LE+
Sbjct: 248 CMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEI 307
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G K++ +L + L GNAL++MY KCG++ A E+F GM+ + VS W+ ++ GLA
Sbjct: 308 GHKIYESLKVCEHKIESYL-GNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLA 366
Query: 347 FHGFAEESIAMFREMQRL---KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403
HG+ EE +F EM+ +RP +TF+GVLVACSH G V++ + YF M Y I
Sbjct: 367 VHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIV 426
Query: 404 PNIRHYGVHGDV---------------------------------------ELGRLANKR 424
P+ +HYG D+ EL ++ K+
Sbjct: 427 PDSKHYGCMVDLLTRRGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQ 486
Query: 425 LLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
L +++ GDYVLLSNIYA G W+ VE++R MD + +Q G S I
Sbjct: 487 LAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQI 535
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 180/506 (35%), Positives = 274/506 (54%), Gaps = 44/506 (8%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
++ +L ++Q A + G D+ SA + + ++ + P ++YAH + +I P+ F
Sbjct: 17 ERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGF 76
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+N++IR A S P A+ ++ +M + P+K++F+FVLKAC G +HG
Sbjct: 77 THNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLF 136
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+K + FV N+LI + G A + D D V+W+SL + Y +G + AR
Sbjct: 137 MKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEAR 196
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+LFDEM R++ SWN MI+GYA G +++A E+F+ +P +DVVSWNAM++ Y G +
Sbjct: 197 ALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNE 256
Query: 252 ALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
LE+F M ERPD T++++L+ACA LG L G+ VH +D + AL
Sbjct: 257 VLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVH-VYIDKHGIEIEGFVATAL 315
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMY+KCG I++A+EVF RDVSTW+++I GL+ HG ++++ +F EM +P
Sbjct: 316 VDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNG 375
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLAN-------- 422
ITF+GVL AC+H G +++ +K F++M Y IEP I HYG D+ LGR+
Sbjct: 376 ITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDL-LGRMGKFEEAEELV 434
Query: 423 --------------------------------KRLLNMRKDESGDYVLLSNIYASRGEWN 450
RLL ES YV +SN+YAS G W+
Sbjct: 435 NEVPADEASILLESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWD 494
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEAD 476
+VR M +KK PGCS+IE D
Sbjct: 495 EAMEVRGKMRAERVKKNPGCSMIEVD 520
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 175/505 (34%), Positives = 278/505 (55%), Gaps = 54/505 (10%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L++ C ++ LKQI + G + +++ G + YA ++F I EP
Sbjct: 20 LFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSV 79
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F +N + +G ++ P V LY +M + ++KP+ +T+ F+ K TR + +G +H
Sbjct: 80 FSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCH 139
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+VKYG + N F N+LI ++ CG ++ A +FD K DVV W+++ +GY R
Sbjct: 140 VVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIK----- 194
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
+D++SW ++TG+ G+++ A + F+++P+RD VSW AMI GY+ K
Sbjct: 195 ---------KDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYK 245
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+AL +F EM++ +PD+ TM+S+LTACA LG LE+G+ + T +D GNAL
Sbjct: 246 EALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIR-TYIDKNKVKNDTFVGNAL 304
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMY KCG++E A+ +F + RD TW+ ++ GLA +G EE++ MF +M + V P E
Sbjct: 305 IDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDE 364
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
+T+VGVL AC+H G V+EGKK+F M + IEPNI HYG
Sbjct: 365 VTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIK 424
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+H D E+ A +++L + + YVL NIYA+ +W++
Sbjct: 425 NMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDK 484
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEAD 476
+ ++R++M D IKK PGCSLIE +
Sbjct: 485 LRELRQVMMDRGIKKTPGCSLIEMN 509
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 183/533 (34%), Positives = 287/533 (53%), Gaps = 86/533 (16%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C + R L ++ A + S ++++ + G + +A ++F ++ EP+ +
Sbjct: 21 RACASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNA--HGRVAHATRVFSQVREPNLHL 78
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP-------NKFTFSFVLKACTRLLYRNMGF 125
+N +I+ AQ+ LDA+ +Y +M + P ++FT+ F+LKAC L+ ++G
Sbjct: 79 HNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGK 138
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
VHG +V+ G E N V+NSLI Y R G
Sbjct: 139 QVHGHVVRSGCESNAIVQNSLIEM-------------------------------YTRAG 167
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+L +AR +FD M RD+VSWN +I+ +A+ G+M KA +FN +P + VVSW A++SGY
Sbjct: 168 DLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTA 227
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV--HCTLLDMTSGVAK 303
G A+E F M+ G PDDV+++++L ACA LG LE+G+ + +C M + +
Sbjct: 228 AGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQM---LRE 284
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
NAL++MYAKCG I++A+++F GM ++DV +WST++GGLA HG A+E++ +F EM+R
Sbjct: 285 TYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMER 344
Query: 364 L-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
V+P ITFVG+L ACSHAG ++EG YF M D Y IEP + HYG
Sbjct: 345 QGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQI 404
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
HGDV+ LA +RL+ + ++ G+ V+L+N+Y
Sbjct: 405 QRTLDLISDMPLPADAKIWGSVLNACRSHGDVDTAVLAAERLVALEPEDVGNLVMLANVY 464
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
A+ W+ V RK + ++K PGCSLIE D+ +++ KP G L
Sbjct: 465 AAARRWSEVANTRKAIRSRSMRKTPGCSLIEVDN-VVQEFVAGEDLKPEFGGL 516
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 177/537 (32%), Positives = 289/537 (53%), Gaps = 75/537 (13%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KCT+ +K++ A + ++D +LI + S+ +N A +F +I +P+ +Y
Sbjct: 32 KCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLC--HQMNLAVNVFNQIQDPNVHLY 89
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
NT+IR Q+ L A + M+K + + FT+ F+LKAC + +H + K
Sbjct: 90 NTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEK 149
Query: 134 YGFEFNRFVRNSLIYFHANCG---------------------------------DLNTAS 160
YGF + FV NSLI ++ CG DL A
Sbjct: 150 YGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRAR 209
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK 220
LFD A+ D V+W+++ GY + GE+S A +LF++MP R++VSW+ M++GY K G+ME
Sbjct: 210 KLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEM 269
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A LF+++P +++V+W +ISG+ G+ K+A ++ +M + G +PDD T++S+L ACA+
Sbjct: 270 ARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAE 329
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
G L +GKKVH ++ + + V NAL+DMYAKCG +++A+ +F M RD+ +W+
Sbjct: 330 SGLLVLGKKVHASIKKIRIKCS-VNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNC 388
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
++ GLA HG E++I +F +MQ+ +P ++T + +L AC+HAG V++G YF M ++
Sbjct: 389 MLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDH 448
Query: 401 NIEPNIRHYG---------------------------------------VHGDVELGRLA 421
I P+I HYG VH V L
Sbjct: 449 GIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKV 508
Query: 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
RL+ + + + G+Y +LSNI+A+ G+WN V +R M + ++K G S IE DD+
Sbjct: 509 LDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDE 565
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 170/439 (38%), Positives = 244/439 (55%), Gaps = 71/439 (16%)
Query: 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165
T+ FV+KAC G VH +VK GFE + ++ NSLI+ +AN DL A LF
Sbjct: 1 MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60
Query: 166 DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF 225
+ DVV+W+++ GY +RGE+ R +FD M RD++SWN +I GYA G++++A LF
Sbjct: 61 CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLF 120
Query: 226 NEVPKRDVVSWNAMISGYV-------------------------------LCGMNKQALE 254
+E+P+R++VSWN+M+SG+V CG +AL
Sbjct: 121 DEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 180
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314
+F++MR+VG +P + T++SLL+ACA LG L+ G +H + D V ++ G AL+DMY
Sbjct: 181 LFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIV-GTALVDMY 239
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
AKCG I A +VF M +DV W+T+I G+A HG +E+ +F+EM+ V P +ITFV
Sbjct: 240 AKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFV 299
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
+L ACSHAG V+EG+K M Y IEP + HY
Sbjct: 300 AMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPM 359
Query: 411 ---------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
+HG+ ELG + KRL+N++ SG Y+LLSNIYA+ +W+ KV
Sbjct: 360 EPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKV 419
Query: 456 RKLMDDSDIKKQPGCSLIE 474
R LM + I K PG S+IE
Sbjct: 420 RNLMKVNGISKVPGVSVIE 438
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 124/256 (48%), Gaps = 16/256 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F ++ D +N+++ AQ P +A+ L+ QM +KP + T +L
Sbjct: 142 GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 201
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L + G +H I E N V +L+ +A CG ++ A+ +F+ DV+
Sbjct: 202 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 261
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV 228
AW+++ AG A G + A+ LF EM + +++ M++ + G +++ +L + +
Sbjct: 262 AWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 321
Query: 229 -------PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
PK V ++ +I G+ ++A+E+ M P+ + +LL C
Sbjct: 322 SSSYGIEPK--VEHYDCVIDLLARAGLLEEAMELIGTMPM---EPNPSALGALLGGCRIH 376
Query: 282 GDLEVGKKVHCTLLDM 297
G+ E+G+ V L+++
Sbjct: 377 GNFELGEMVGKRLINL 392
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 183/505 (36%), Positives = 274/505 (54%), Gaps = 82/505 (16%)
Query: 14 KCTNLRTLKQIQA-LVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
KC +L L+QI A ++ N N + R + + + G ++YA +F +I P++F+
Sbjct: 15 KCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFI 74
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF--VLKACTRLLYRNMGFCVHGK 130
+ +I+G + + NP++++ LY +M C + FS VLKAC +LL + G VHG+
Sbjct: 75 FFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQ 134
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++K F+ FV NS++ Y GE+ +A
Sbjct: 135 VLKTHLWFDPFVGNSMVRM-------------------------------YIDFGEIELA 163
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +FD MP RD+VSWN MI GY K GE+E A ++F + +DVV+W +MIS YV
Sbjct: 164 RRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPM 223
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKVLH 306
+AL++F EM S+G RPD ++S+L+A ADLG +E GK +H + ++++SG
Sbjct: 224 KALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFI---- 279
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
G+ALIDMY+KCG IE A VF + R++ W+++I GLA HG A E++ +F EM+R+
Sbjct: 280 GSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMD 339
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------- 411
+ P EITF+G+L CSH G VEEG+ YF+ M ++Y I P I+HYG
Sbjct: 340 IEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDA 399
Query: 412 -------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
HG +E+G+ A R + + D+S YVLLSNIYA
Sbjct: 400 LGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKA 459
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCS 471
G W+ V K+R +M +KK GCS
Sbjct: 460 GRWDDVAKIRLMMRQRGVKKIAGCS 484
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 188/523 (35%), Positives = 284/523 (54%), Gaps = 54/523 (10%)
Query: 4 NRHRSSRL--WKKCTNLRTLKQIQALV--TINGFNSDSSALRELIYSGSVVIPGAINYAH 59
N H+ S L + C +++ LKQI A + T+ ++ + L + +P YA
Sbjct: 34 NPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYAL 93
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQN-PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
+ ++ P+ +YN IIRG A S N ++ + +Y QM I P+ +T FVLKAC
Sbjct: 94 SLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAES 153
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
G VHG+ +K G + +V N+L+ +A C + +A +FD + D+V+W+++
Sbjct: 154 RAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMI 213
Query: 179 AGYARRGELSMARSLFDEMPVR------DLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
GY + G AR +R D+ N ++ Y K G+ A ++F E+P ++
Sbjct: 214 QGYVKMG---FAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKN 270
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VVSWN+MISG G K++L MF +M+ +G +PDDVT++++L +CA+LG LE+GK VH
Sbjct: 271 VVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVH- 329
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
LD A GNAL+DMYAKCGSI++A VF M +DV +++ +I GLA HG
Sbjct: 330 AYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGG 389
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+++ +F EM ++ + P E+TFVGVL ACSH G VEEG+KYF+ M YN+ P + HYG
Sbjct: 390 KALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCM 449
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG VELG K++ + +
Sbjct: 450 VDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKD 509
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YVL+SNIY+S W K+RK M + +++K PGCS IE D
Sbjct: 510 GAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELD 552
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 194/595 (32%), Positives = 297/595 (49%), Gaps = 115/595 (19%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KC++ + LK++ A + G D + +L + ++ ++YA +F +I +P+ + +
Sbjct: 34 KCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTW 93
Query: 74 NTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
NT+IR A S +P + ++ + +KC PNKFTF FV+KA + L +G VHG +
Sbjct: 94 NTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAI 153
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K F + ++ NSL+ F+ CGDL+ A LF G + DVV+W+S+ + +A+ A
Sbjct: 154 KLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALE 213
Query: 193 LFDEMPVR---------------------------------------DLVSWNVMITGYA 213
LF +M DL N M+ Y
Sbjct: 214 LFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYT 273
Query: 214 KQGEMEKANELFNEVPKRDVVS-------------------------------WNAMISG 242
K G ++ A +LF+E+P+RDV S WN +IS
Sbjct: 274 KCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISA 333
Query: 243 YVLCGMNKQALEMFEEMR-SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
Y G K+AL +F E++ S +PD+VT++S L+ACA LG +++G +H + G+
Sbjct: 334 YEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYI--KREGI 391
Query: 302 AKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
H ++L+DMYAKCGS+E+A+EVF + +RDV WS +I GL HG + +I +F E
Sbjct: 392 VLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFE 451
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
MQ KV+P +TF VL ACSHAG V+EG+ +F M Y + P ++HY
Sbjct: 452 MQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAG 511
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
+H +VELG LA+ +LL + G VLLSN
Sbjct: 512 FLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSN 571
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
IYA G W +V ++RKLM D+++KK+PGCS IEA+ ++L P S N+
Sbjct: 572 IYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVH-EFLVGDNTHPLSSNI 625
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 178/522 (34%), Positives = 292/522 (55%), Gaps = 55/522 (10%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
R S + + ++ LKQ+QA++T G +S +LI+ ++ G +++AH +F++ +
Sbjct: 7 RISCMTQHLCSMLELKQVQAIITKAGLHSHLPFTAKLIFFSALSPMGNLSHAHSLFLQTS 66
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR--------- 117
++F+ NT+IR A S PL A+++Y M ++ + FT++FVLKAC+R
Sbjct: 67 MHNSFICNTMIRAFANSSYPLQALYIYNHMHTTNVVSDHFTYNFVLKACSRAHKFAQEFV 126
Query: 118 ----LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
+ + G VH ++K G + + ++NSL+ ++ CG ++ A LFD + +V+
Sbjct: 127 KCDEFIIISKGGEVHCTVLKLGLDQDPSIQNSLLCMYSQCGLVHVAQHLFDEISNRSLVS 186
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233
W+ + + Y R + A L + MP +++VSWN +I Y + G++E A +F +P+RD
Sbjct: 187 WNIMISAYDRVNDSKSADYLLESMPHKNVVSWNTVIGRYIRLGDIEGARRVFQIMPQRDA 246
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
VSWN++I+G V + A+ +F EM++ RP +VT++S+L ACA+ G LE+G K+H +
Sbjct: 247 VSWNSLIAGCVSVKDYEGAMGLFSEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHES 306
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
L + L GNAL++MY+KCG + A EVF GMR + +S W+ +I GLA HG+ EE
Sbjct: 307 LKACGHKIEGYL-GNALLNMYSKCGKLNSAWEVFNGMRIKTLSCWNAMIVGLAVHGYCEE 365
Query: 354 SIAMFREMQRL--KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
++ +F EM+ VRP +TF+GVL+ACSH G V++ + F M +Y I P+I+HYG
Sbjct: 366 ALQLFSEMESGLDTVRPNRVTFLGVLIACSHKGLVDKARWNFDHMAKQYKILPDIKHYGC 425
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
G+VEL +++ ++L + +
Sbjct: 426 IVDLLSRFGLLEEAHQMIKTAPLQNSAILWRTLLGACRTQGNVELAKVSFQQLAKLGRLT 485
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
GDYVLLSNIYA W+ VE+VR M + KQ S I+
Sbjct: 486 DGDYVLLSNIYAEAERWDEVERVRSEMIGLHVPKQVAYSQID 527
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 188/490 (38%), Positives = 273/490 (55%), Gaps = 57/490 (11%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
++ LKQ+ A + D A EL+ +V ++YA K+F + P+ F YNT+I
Sbjct: 1 MQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLI 60
Query: 78 RGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
R ++S +P DA+ ++ +M E CS++PN FTF V KAC R G VHG VK+G
Sbjct: 61 RALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGL 120
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
+ + FV ++++ + +CG + A LF + V RR +
Sbjct: 121 DSDEFVVSNVVRMYLSCGVMEDAHRLF---YRRVFVDGCDGIRDKKRRVD---------- 167
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
D+V WNVMI GY + GE+E A LF+E+P+R VVSWN MI+GY G K+A+E+F
Sbjct: 168 ---GDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVF 224
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
EM+ P+ VT++S+L A + LG LE+GK VH + GV VL G+ALIDMYAK
Sbjct: 225 REMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVL-GSALIDMYAK 283
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CGSIE+A++VF G+ R+V TWST+I GLA HG A++++ F +M+R V P+++T++G+
Sbjct: 284 CGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGL 343
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------- 410
L ACSHAG V EG+ +F M +EP I HYG
Sbjct: 344 LSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKP 403
Query: 411 -------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
+HG+VE+G+ + L+ + +SG YV LSNIYAS G W V KVR
Sbjct: 404 DDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRL 463
Query: 458 LMDDSDIKKQ 467
+M + D+ +
Sbjct: 464 MMKEMDVSAR 473
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 198/602 (32%), Positives = 285/602 (47%), Gaps = 112/602 (18%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H S L C L+TLKQI + + G ++ AL +LI +V G ++YA +F I
Sbjct: 29 HPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTI 88
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
P+ ++N +IRG + S++P A+ Y M +PN++TF + K+CT++ + G
Sbjct: 89 RNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGK 148
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
VH ++K G E N FV SLI +A G+L A ++FD + D V++++L GYA +G
Sbjct: 149 QVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKG 208
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV----------- 234
L AR LFDE+PVRD+VSWN MI+GYA+ G +E+A F E+ + V
Sbjct: 209 FLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLS 268
Query: 235 ----------------SW-------------NAMISGYVLCG------------------ 247
SW N +I YV CG
Sbjct: 269 ACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVV 328
Query: 248 -------------MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
K+AL +F M P+DVT LS+L ACA+LG L++GK VH +
Sbjct: 329 SWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYV 388
Query: 295 -LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+M S V +LIDMYAKCG + A +F M + ++TW+ +I G A HG +
Sbjct: 389 DKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDT 448
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
++ +F M P +ITFVGVL AC HAG + G++YF M +Y + P + HYG
Sbjct: 449 ALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMI 508
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
+H +EL K L + +
Sbjct: 509 DLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPS 568
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSG 494
YVLLSNIYA G W V K+R ++D+ +KK PGCS IE D ++L K P S
Sbjct: 569 AYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVH-EFLVGDKVHPQSN 627
Query: 495 NL 496
+
Sbjct: 628 EI 629
>gi|357473845|ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508262|gb|AES89404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 180/527 (34%), Positives = 292/527 (55%), Gaps = 61/527 (11%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF--VK 64
R++ L K +++ LKQ+QA++T +G +S +LI+ ++ G +++A+ +F
Sbjct: 8 RATSLLNKLSSISELKQLQAIITKSGLHSHIPLTTKLIFFSALSPFGNLSHAYSLFQHSS 67
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR------- 117
I + F+ NT+IR + S PL A+ +Y QM ++ + +T +FVLKAC+R
Sbjct: 68 ILIHNPFISNTMIRAFSHSCFPLQALLIYNQMLINNVVSDSYTCNFVLKACSRAYKLIQE 127
Query: 118 ---------LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168
++ N G +H +++K GF+ + V+NSL+YF++ CG ++ A LFD
Sbjct: 128 SGSCDDDNLVVVYNKGTEIHCRVIKIGFQNDPSVQNSLLYFYSQCGLVSVARHLFDQIKD 187
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+V+W+ + + Y + A L + MP + +VSWN +I Y + G+++ A +F +
Sbjct: 188 TSLVSWNIMISAYDLVNDYESADYLLELMPCKTVVSWNTLIARYIRLGDVQAARRVFGCM 247
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
P+R+ VSWN+MI+G V ALE+F EM++ G +P +VT++S+L ACA+ G LE+G
Sbjct: 248 PERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGH 307
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
K++ +L + L GNAL++MY KCG++ A E+F GM+ + VS W+ ++ GLA H
Sbjct: 308 KIYESLKVCEHKIESYL-GNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 366
Query: 349 GFAEESIAMFREMQRL---KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
G+ EE +F EM+ +RP +TF+GVLVACSH G V++ + YF M Y I P+
Sbjct: 367 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 426
Query: 406 IRHYGVHGDV---------------------------------------ELGRLANKRLL 426
+HYG D+ EL ++ K+L
Sbjct: 427 SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLA 486
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+++ GDYVLLSNIYA G W+ VE++R MD + +Q G S I
Sbjct: 487 KLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQI 533
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 174/501 (34%), Positives = 278/501 (55%), Gaps = 55/501 (10%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
++ ++++ ++Q Q L+T +G + + ++I S+ G++ YA +F T + F+
Sbjct: 14 QQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTTMDNPFV 73
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG-------- 124
NT+IR A+S P+ A++LY M + IK + F + F LKAC R+L+ N G
Sbjct: 74 CNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFMYPFGLKACARVLWCNEGDIKCTQLD 133
Query: 125 -FC----VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
C +H ++ + G + + F++NSL+Y ++ CG L+ A +FD + + +W+ + +
Sbjct: 134 IACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARRVFDEMTEKTITSWNVMIS 193
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
Y + + A SL MP +++VSWN++I Y + G++E A +F E+P+RD VSWN+M
Sbjct: 194 AYDQINDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSM 253
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
I+GYV +AL +F EM D+T++S+L ACA+ G LE+G+K+H +L
Sbjct: 254 IAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREY 313
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ L NAL+DMYAKCG + A EVF ++ + +S W+ +I LA HG+ EE++ +F
Sbjct: 314 KIEGYL-SNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFS 372
Query: 360 --EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------- 410
EM RP +TF+GVL+ACSH G V+EG+K+F M +EY I P+I+HYG
Sbjct: 373 TMEMSVDGARPNRVTFIGVLIACSHKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLS 432
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
VH V+L + ++L M GDYVL
Sbjct: 433 RCGLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVL 492
Query: 439 LSNIYASRGEWNRVEKVRKLM 459
LSNIYA WN VE+ K++
Sbjct: 493 LSNIYAEAQRWNDVERASKIL 513
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 176/510 (34%), Positives = 282/510 (55%), Gaps = 83/510 (16%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAIN-----YAHKMFVKITE 67
+ CT L LK I A + D +++ S +I +IN YA ++F +I
Sbjct: 23 ESCTTLSHLKIIHAHLIRAHTIFD-------VFAASCLISISINKNLLDYAAQVFYQIQN 75
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P+ F+YN+ IRG + S++P + Y Q ++ + P+ T+ F++KACT+ +MG
Sbjct: 76 PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG+I+++GF+ + +V+NSL+ ++ GD+ +AS +F + +DVV+W+S+ AGY + G++
Sbjct: 136 HGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDV 195
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
+ AR LFD+MP ++LV+W+VMI+GYAK N F+
Sbjct: 196 TSARKLFDKMPEKNLVTWSVMISGYAK-------NSFFD--------------------- 227
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+A+E++ ++S G ++ M+S++ +CA LG LE+G++ H +L V +L G
Sbjct: 228 ---KAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLIL-G 283
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
AL+DMYA+CGSI++AI VF + RD +W+TLI G A HG+AE+++ F M++ +
Sbjct: 284 TALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLT 343
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P EITF VL ACSH G VE G + F+ M+ +Y IEP + HYG
Sbjct: 344 PREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEK 403
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+H + E+ A K L+ ++ + SG YVLLSNIYA +
Sbjct: 404 FVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNK 463
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
W VE +R++M + + K PG +L E D K
Sbjct: 464 WENVENIRQMMKERGVVKPPGYTLFEMDGK 493
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 186/538 (34%), Positives = 280/538 (52%), Gaps = 74/538 (13%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C N L QIQA + +G + I + S I++A K+F KI +P+T
Sbjct: 18 LLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRF--KRIHHARKLFDKIPQPNT 75
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+N + RG Q+ + D V L+ ++ + + PN FTF ++K+C +L G VH
Sbjct: 76 ATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCC 135
Query: 131 IVKYGFEFNRFVRNSLIYFHAN-------------------------------CGDLNTA 159
K+GF+ N FV SLI ++ CGD+ +
Sbjct: 136 ATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSG 195
Query: 160 SVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
LFD + DVV WS L +GY ++ AR LFD+MP RD +SWN M+ GYA GE+E
Sbjct: 196 RRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVE 255
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLSLLTAC 278
++F+E+P+R+V SWN +I GYV G+ + LE F+ M G P+D T++++L+AC
Sbjct: 256 MFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSAC 315
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
+ LG L++GK VH + + GN LIDMYAKCG IE A+ VF + +D+ +W
Sbjct: 316 SRLGALDMGKWVH-VYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISW 374
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+T+I GLA HG A +++ MF M+ P +TFVG+L AC+H G V++G YFK M D
Sbjct: 375 NTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVD 434
Query: 399 EYNIEPNIRHYG---------------------------------------VHGDVELGR 419
Y+I P I HYG ++ +VE+
Sbjct: 435 HYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAE 494
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
LA +RL+ + + ++V++SNIY G V +++ M D+ +K PGCS+IE +D
Sbjct: 495 LALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECND 552
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 196/593 (33%), Positives = 285/593 (48%), Gaps = 112/593 (18%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +KC ++ LKQIQ+ + + G D A LI ++ ++Y + P+T
Sbjct: 12 LLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNT 71
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKC-SIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F +N IRG S+NP +AV LY ++ +C KP+ +T+ + KAC RL MG + G
Sbjct: 72 FSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILG 131
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
++ GF+ + FV N++I+ +CGDL+ A +FD D+V+W+S+ GY RRG
Sbjct: 132 HVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYE 191
Query: 190 ARSLFDEMPVRDLVSWNVMITG-------------------------------------- 211
A + + EM V + V + G
Sbjct: 192 ALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMD 251
Query: 212 -YAKQGEMEKANEL-------------------------------FNEVPKRDVVSWNAM 239
Y K G +E A +L F+E+P +DVV WNAM
Sbjct: 252 MYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAM 311
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
I GYV K+AL +F EM+++ PD+VTM+S L+AC+ LG L+VG +H ++
Sbjct: 312 IGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH-HYIEKHE 370
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
V G ALIDMYAKCG I +AI+VF + R+ TW+ +I GLA HG A +IA F
Sbjct: 371 LSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFS 430
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
EM V P E+TF+G+L AC H G VEEG+KYF M ++N+ P ++HY
Sbjct: 431 EMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRA 490
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
+HG+V +G A +LL M +SG YVLL+
Sbjct: 491 GLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLA 550
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
N+Y W K RKLM ++K PGCS IE + + +++ K P S
Sbjct: 551 NMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVY-EFIVRDKSHPQS 602
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 177/491 (36%), Positives = 264/491 (53%), Gaps = 72/491 (14%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
AHK+F +I EP+ ++N + RG +Q+++ D + L+ QM+ + PN FTF +LK+C +
Sbjct: 4 AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVK 63
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHAN------------------------- 152
+ G VH ++K GF N FV +LI +A+
Sbjct: 64 INALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAM 123
Query: 153 ------CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWN 206
C DL TA LFD + D+V W+++ +GY ++ AR LFD+MP +D++SWN
Sbjct: 124 INGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWN 183
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER- 265
++ GYA G++ LF E+P+R+V SWNA+I GY G + L F+ M G
Sbjct: 184 TVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVV 243
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
P+D T++++L+ACA LG L++GK VH + V NAL+DMYAKCG +E A++
Sbjct: 244 PNDATLVNVLSACARLGALDLGKWVH-VYAESHGYKGNVYVRNALMDMYAKCGVVETALD 302
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VF M ++D+ +W+T+IGGLA HG +++ +F M+ P ITF+G+L AC+H G
Sbjct: 303 VFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGL 362
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYG----------------------------------- 410
VE+G YFK M D+Y+I P I HYG
Sbjct: 363 VEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALL 422
Query: 411 ----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
V+ +VEL LA ++L+ +YV+LSNIY G W V +++ M D+ KK
Sbjct: 423 GACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKK 482
Query: 467 QPGCSLIEADD 477
PGCSLIE +D
Sbjct: 483 LPGCSLIEVND 493
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
ME A+++F+++P+ + WNAM GY +K + +F +M+ + P+ T +L +
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60
Query: 278 CADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
C + L+ G++VHC ++ SG A LIDMYA G+I A VF M +R+V
Sbjct: 61 CVKINALKEGEEVHCFVI--KSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVI 118
Query: 337 TWSTLIGG 344
W+ +I G
Sbjct: 119 AWTAMING 126
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F + D +NTII G A + DA+ L++ M+ P+ TF +L
Sbjct: 295 GVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGIL 354
Query: 113 KACTRLLYRNMGF 125
ACT + GF
Sbjct: 355 CACTHMGLVEDGF 367
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
+E A +VF + + + S W+ + G + + ++ I +FR+M+ L V P TF +L +
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60
Query: 380 CSHAGKVEEGKK 391
C ++EG++
Sbjct: 61 CVKINALKEGEE 72
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 181/508 (35%), Positives = 279/508 (54%), Gaps = 45/508 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYS-GSVVIPGAINYAHKMFVKITEP- 68
L + C N + L Q+ L+ + A L+ S S G++NYA K+F + P
Sbjct: 37 LLQNCKNPKDLIQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPR 96
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
++FMY T+I+ A NP +A Y++M ++ + PN FTF++V AC++ G
Sbjct: 97 NSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQ 156
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLN-TASVLFDGDAKMDVVAWSSLTAGYARRG 185
H +++K+ FEF NSL+ F+ G++ +FD DVV+W+ L GY + G
Sbjct: 157 AHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSG 216
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+L AR LFDEMP RD+VSW +M+ GYA G + +A+ LF+E+PKR++VSW+A+I GY+
Sbjct: 217 DLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQ 276
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
G +ALE+F+EM+ + D+V + +LL+ACA LG L+ G+ +H + V L
Sbjct: 277 IGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHL 336
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
ALIDMY+KCG I+ A +VF D+ V WS++IGGLA H F E++I +F +M
Sbjct: 337 -STALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECG 395
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
+ P+EIT++ +L AC+H+G V+ G + F M + +P ++HYG
Sbjct: 396 IEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDA 455
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+H +VELG + L+ M +YVL SN+YA+
Sbjct: 456 FRVVETMPVKADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAV 515
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
W+ K+R+ M ++K PGCS IE
Sbjct: 516 NRWDISGKLRREMKVRGMQKNPGCSSIE 543
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 188/510 (36%), Positives = 273/510 (53%), Gaps = 73/510 (14%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
R L ++C + +KQ+ + + ++ D A ++I +V I++A+K+F+ +
Sbjct: 11 QRCLSLLEQCRTMSQIKQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSL 70
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
TF++NTIIR + A+ LY M + PN +TFSFVL+ACT +G
Sbjct: 71 PHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTD--NSPVGL 128
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
H +++K G+E FV N LI+ +AN WSS+ A
Sbjct: 129 ASHAQVIKLGWESYDFVLNGLIHLYAN---------------------WSSVEA------ 161
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
AR LFD RD+++W +I GY K G +E A ELF+++P+R+ VSW+AMI+GYV
Sbjct: 162 ----ARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVH 217
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
GM ++ALE+F +++ G RP+ ++ LTAC+ LG L+ G+ +H + + + +VL
Sbjct: 218 MGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVL 277
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
G AL+DMYAKCG IE A VF M D+D +++LI GLA HG + ++I +F MQ K
Sbjct: 278 -GTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEK 336
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
V P E+TF+ VL ACS G V+EG + F M Y IEP ++HYG
Sbjct: 337 VIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEA 396
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
VHGDVELG+ + L+ D G +VLLSN+YAS
Sbjct: 397 KRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVESLVERGLDHGGVHVLLSNMYASS 456
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+W+ V KVRK M +KK PGCS IE D
Sbjct: 457 NQWDWVVKVRKEMGAKKVKKVPGCSSIEID 486
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 196/583 (33%), Positives = 289/583 (49%), Gaps = 113/583 (19%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP--GAINYAHKMFV 63
H S L C L++L+ I A + G ++ + AL +LI V+ P + YA +F
Sbjct: 3 HPSLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLI-EFCVLSPHFDGLPYAISVFE 61
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
I EP+ ++NT+ RG A S +P+ A++LY M + PN +TF F+LK+C +
Sbjct: 62 TIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFRE 121
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA---------------- 167
G +HG ++K G++ + +V SLI + G L A +FD +
Sbjct: 122 GQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYAS 181
Query: 168 --------KM-------DVVAWSSLTAGYARRGELSMARSLFDEMPV------------- 199
KM DVV+W+++ +GYA G A LF EM
Sbjct: 182 KGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSV 241
Query: 200 -------------RDLVSW-------------NVMITGYAKQGEMEKANELFNEVPKRDV 233
R + SW N +I Y K GE+E A LF + +DV
Sbjct: 242 VSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDV 301
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
+SWN +I GY + K+AL +F+EM GE P+DVTMLS+L ACA LG +E+G+ +H
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY 361
Query: 294 LLDMTSGVAKVL-HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ GVA H +LIDMYAKCG IE A +VF + +R +S+W+ +I G A HG A
Sbjct: 362 INKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRAN 421
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+ +F M++ ++ P +ITFVG+L ACSH+G ++ G+ F+ M+++Y I P + HYG
Sbjct: 422 AAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCM 481
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
++ +VELG + L+ +
Sbjct: 482 IDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNP 541
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YVLLSNIYA+ G WN V K+R L++D +KK PGCS IE D
Sbjct: 542 GSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 584
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 177/522 (33%), Positives = 286/522 (54%), Gaps = 79/522 (15%)
Query: 2 RTNRHRSSRLW--KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGA----I 55
+T R ++ +L+ + C++L LK I A + D A LI V P + I
Sbjct: 12 KTLRLKNPKLFSLETCSDLTHLKIIHAYMIRTHIICDVFAASRLI--AFCVDPSSGTSLI 69
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
+YA ++F +I P+ F++N +IRG + S+NP A Y Q ++ + P+ TF F++K+C
Sbjct: 70 DYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSC 129
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
T+L +MG HG I+K+GFE + +V+NSL++ +A GD A+++F +DVV+W+
Sbjct: 130 TKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWT 189
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
S+ G+ + G++ AR LFD+MP ++LV+W+ MI+GYA+ +K
Sbjct: 190 SMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDK--------------- 234
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
A+E+F+ ++S G R ++ M+S++++CA LG LE+G++ H ++
Sbjct: 235 ----------------AVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVV 278
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
+ +L G AL+DMYA+CGSI++A+ VF + +RD +W+ LI GLA HG++E S+
Sbjct: 279 KNGMTLNLIL-GTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSL 337
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
F M + P +ITF VL ACSH G VE G + F+ M+ ++ +EP + HYG
Sbjct: 338 KYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDL 397
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
+H + E+G K L+ + SG Y
Sbjct: 398 LGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYY 457
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
VLLSNIYA+ EW +V ++R++M +KK PG SLIE D +
Sbjct: 458 VLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGR 499
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 185/505 (36%), Positives = 273/505 (54%), Gaps = 94/505 (18%)
Query: 14 KCTNLRTLKQIQA-LVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
KC +L L+QI A ++ N N + R + + + G ++YA +F +I P++F+
Sbjct: 15 KCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFI 74
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF--VLKACTRLLYRNMGFCVHGK 130
+ +I+G + + NP++++ LY +M C + FS VLKAC +LL + G VHG+
Sbjct: 75 FFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQ 134
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++K F+ FV NS++ Y GE+ +A
Sbjct: 135 VLKTHLWFDPFVGNSMVRM-------------------------------YIDFGEIELA 163
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +FD MP RD+VSWN MI GY K GE+E A+ELF+E+P+RD+VS NAMI GY
Sbjct: 164 RRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGY------- 216
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKVLH 306
+EM S+G RPD ++S+L+A ADLG +E GK +H + ++++SG
Sbjct: 217 -----GKEMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFI---- 267
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
G+ALIDMY+KCG IE A VF + R ++ W+++I GLA HG A E++ +F EM+R+
Sbjct: 268 GSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMD 327
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------- 411
+ P EITF+G+L CSH G VEEG+ YF+ M ++Y I P I+HYG
Sbjct: 328 IEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDA 387
Query: 412 -------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
HG +E+G+ A R + + D+S YVLLSNIYA
Sbjct: 388 LGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKA 447
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCS 471
G W+ V K+R +M +KK GCS
Sbjct: 448 GRWDDVAKIRLMMRQRGVKKIAGCS 472
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 186/539 (34%), Positives = 286/539 (53%), Gaps = 76/539 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C + L+++QA + +GF + ++ S V + +A +F +P
Sbjct: 31 LLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSW--VGLKQMAHARHLFDHFPDPKV 88
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++N I RG + + VFL+ +M+ ++PN FTF VLK+C ++ G +H +
Sbjct: 89 ELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCE 148
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY--------A 182
++K G E N+FV +LI ++ + +A LF G + ++VAW+S+ +GY A
Sbjct: 149 VIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALA 208
Query: 183 RR-----------------------GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
RR G++ AR LFD MP RD +SWN M+ GYA G++E
Sbjct: 209 RRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVE 268
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVTMLSLLTAC 278
+LF E+P+R+V SWN +I GY G + L F+ M G P+D T++++L+AC
Sbjct: 269 ACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSAC 328
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
A LG L++GK VH + T G ++ GNALIDMY+KCG IE A+EVF M +D+ T
Sbjct: 329 ARLGALDLGKWVH--VYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLIT 386
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+++I GLA HG +++ +F +M+ +P ITF+GVL +C+H G VEEG YF M
Sbjct: 387 WNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMV 446
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
+EY+I P I HYG ++ +++L
Sbjct: 447 NEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLA 506
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
LA ++L+ + +YVLLSNIY G W V +++ LM D+ KK PGCSLIE +D
Sbjct: 507 ELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVND 565
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 181/506 (35%), Positives = 270/506 (53%), Gaps = 73/506 (14%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSV-VIPGAINYAHKMFVKITEPDTFMYN 74
T++ L Q A + +G + A LI S S AI YAH +F +I P+++M+N
Sbjct: 18 TSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWN 77
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
TIIR A S P A+ ++ QM S+ P+K+TF+F LK+C G +HG ++K
Sbjct: 78 TIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKT 137
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA-RSL 193
G + F++N+LI+ +A+CG + A L D + DVV+W++L + YA RG + +A R +
Sbjct: 138 GLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRV 197
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
F E PV+++VSWN MITGY+ G F+EV L
Sbjct: 198 FGETPVKNVVSWNAMITGYSHAGR-------FSEV------------------------L 226
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
+FE+M+ G +PD+ T++S+L+ACA +G L G+ VH +D AL+DM
Sbjct: 227 VLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVH-AYIDKNGISIDGFVATALVDM 285
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
Y+KCGSIE+A+EVF +D+STW+++I GL+ HG + ++ +F EM +P E+TF
Sbjct: 286 YSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTF 345
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------------------- 411
V VL ACS AG ++EG++ F LM + I+P I HYG
Sbjct: 346 VCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMP 405
Query: 412 -----------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
HG+VEL ++LL + ES +V LSN+YAS G W V +
Sbjct: 406 QKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVME 465
Query: 455 VRKLMDDSDIKKQPGCSLIEADDKAF 480
VR+ M ++K PGCS+IE D +
Sbjct: 466 VRQKMRAQGVRKDPGCSMIEVDGTVY 491
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 163/423 (38%), Positives = 253/423 (59%), Gaps = 41/423 (9%)
Query: 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
M + + P FTFS ++KAC+ + G VHG I KYGF+ + FV+ +L+ F+ N G
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQ 215
+ A +FD ++ DV AW+++ + +AR G++S AR LFDEMPVR+ SWN MI GY++
Sbjct: 61 IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRL 120
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
+E A LF+++P RD++SW MI+ Y ++AL +F EM++ G PD+VTM +++
Sbjct: 121 RNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATII 180
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+ACA LG L++GK++H ++M + V G+ALIDMYAKCGS+++++ VF +R +++
Sbjct: 181 SACAHLGALDLGKEIHLYAMEMGFDL-DVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNL 239
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
W+++I GLA HG+AEE++AMF MQR K++P +TF+ VL AC+HAG VEEG+K F
Sbjct: 240 FCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLS 299
Query: 396 MRDEYNIEPNIRHYG---------------------------------------VHGDVE 416
M +++I P I HYG +H +++
Sbjct: 300 MSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLK 359
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK-QPGCSLIEA 475
+ ++A + + SG Y LL N+YA W+ V +R M + ++K PG S IE
Sbjct: 360 IAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEM 419
Query: 476 DDK 478
D K
Sbjct: 420 DRK 422
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 186/539 (34%), Positives = 286/539 (53%), Gaps = 76/539 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C + L+++QA + +GF + ++ S V + +A +F +P
Sbjct: 73 LLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSW--VGLKQMAHARHLFDHFPDPKV 130
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++N I RG + + VFL+ +M+ ++PN FTF VLK+C ++ G +H +
Sbjct: 131 ELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCE 190
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY--------A 182
++K G E N+FV +LI ++ + +A LF G + ++VAW+S+ +GY A
Sbjct: 191 VIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALA 250
Query: 183 RR-----------------------GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
RR G++ AR LFD MP RD +SWN M+ GYA G++E
Sbjct: 251 RRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVE 310
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVTMLSLLTAC 278
+LF E+P+R+V SWN +I GY G + L F+ M G P+D T++++L+AC
Sbjct: 311 ACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSAC 370
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
A LG L++GK VH + T G ++ GNALIDMY+KCG IE A+EVF M +D+ T
Sbjct: 371 ARLGALDLGKWVH--VYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLIT 428
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+++I GLA HG +++ +F +M+ +P ITF+GVL +C+H G VEEG YF M
Sbjct: 429 WNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMV 488
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
+EY+I P I HYG ++ +++L
Sbjct: 489 NEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLA 548
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
LA ++L+ + +YVLLSNIY G W V +++ LM D+ KK PGCSLIE +D
Sbjct: 549 ELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVND 607
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 188/548 (34%), Positives = 281/548 (51%), Gaps = 81/548 (14%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV-IPGAINYAHKMFVKITE 67
SRL + C + Q AL+ +G + S + ++ +PGA A +F ++ E
Sbjct: 15 SRL-RACRSASHAIQCHALLLTSGHLAASPLRLSNLLLLAIASVPGAAPLADAVFARLPE 73
Query: 68 P---DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
P D F +NT IR A + P A+ + +M C ++P+ +TF VLKAC G
Sbjct: 74 PAARDPFPWNTAIRLHAPGR-PRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRAG 132
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD--GDAKMDVVAWSSLTAGYA 182
VH + V+ G + F N+LI F+ D + +FD G D+V+W+S+ AGY
Sbjct: 133 LLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLVSWNSMVAGYV 192
Query: 183 RRGELSMARSLFDEMPVRD---------------------------------LVSWNVMI 209
GE+ +A+ LFDEMP RD LV WN MI
Sbjct: 193 GCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELFDQMTERDLVCWNSMI 252
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
GYA+ G M++A LF E+P+R+V+SW+ +I G+V CG K+ALE F+ M G RPD V
Sbjct: 253 DGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRV 312
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
+ ++ACA LG LE G+ +H + L+ ++ V+ ALIDMY KCG ++ A+ +F
Sbjct: 313 AAVGAVSACAQLGALEQGRWLH-SYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFES 371
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M +R V TW+ +I GL HG+ +++ +F M+ +V +++ + +L AC+HAG V EG
Sbjct: 372 MPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEG 431
Query: 390 KKYFKLMRDEYNIEPNIRHYGV-------------------------------------- 411
+ F M+ ++ I+P + HYG
Sbjct: 432 LEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACR 491
Query: 412 -HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470
H VEL L+ +RL N+ D+SG YVLLSNIYA G W V ++RKLM D ++K G
Sbjct: 492 SHSCVELAELSVERLANLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGR 551
Query: 471 SLIEADDK 478
S+IE D +
Sbjct: 552 SVIEVDGE 559
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 197/583 (33%), Positives = 288/583 (49%), Gaps = 113/583 (19%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP--GAINYAHKMFV 63
H S L C L++L+ I A + G ++ + AL +LI SV+ P + YA +F
Sbjct: 3 HPSLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLI-EFSVLSPHFDGLTYAISVFD 61
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
I EP+ ++NT+ RG A S +P+ A++LY M + PN +TF F+LKAC +
Sbjct: 62 SIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFRE 121
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFH-------------------------------AN 152
G +HG ++K G + + +V SLI + A+
Sbjct: 122 GQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYAS 181
Query: 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV------------- 199
G + +A +FD DVV+W++L +GYA G A LF EM
Sbjct: 182 NGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTV 241
Query: 200 -------------RDLVSW-------------NVMITGYAKQGEMEKANELFNEVPKRDV 233
R + SW N +I Y K GE+E A+ LF + +DV
Sbjct: 242 LSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDV 301
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
+SWN +I GY + K+AL +F+EM GE P++VTMLS+L ACA LG +++G+ +H
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVY 361
Query: 294 LLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ GV+ +LIDMYAKCG IE A +VF M +R +S+W+ +I G A HG A
Sbjct: 362 IDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRAN 421
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+ +F M++ + P +ITFVG+L ACSH+G ++ G+ F+ M ++Y I P + HYG
Sbjct: 422 PAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCM 481
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG+VELG + L+ + S
Sbjct: 482 IDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNS 541
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YVLLSNIYA+ G WN V K R L++D +KK PGCS IE D
Sbjct: 542 GSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEID 584
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/504 (34%), Positives = 279/504 (55%), Gaps = 56/504 (11%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C ++ IQ ++ F S S AL +++Y F ++ P+ F+YN
Sbjct: 156 CASMIKTNAIQDCFLVHQFISASFALN------------SVHYPVFAFTQMENPNVFVYN 203
Query: 75 TIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
+I+G P A+ Y M E+ ++ P +TFS ++KACT + +G VH I K
Sbjct: 204 AMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWK 263
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GFE + FV+ +L+ F++ L+ A +FD + D AW+++ + AR G++ AR L
Sbjct: 264 KGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKL 323
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
F+EMP R+ +WN MI GYA+ G +E A LFN++P +D++SW MI+ Y + AL
Sbjct: 324 FEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDAL 383
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALID 312
++ EMR G PD+VTM ++ +ACA +G LE+GK++H + M+ G+ V G+AL+D
Sbjct: 384 AIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYV--MSQGLNLDVYIGSALVD 441
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCGS++ ++ +F + D+++ W+ +I GLA HG+AE+++ MF M+R K+ P +T
Sbjct: 442 MYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVT 501
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+ +L AC+HAG V+EG+ F M +Y+I P+IRHYG
Sbjct: 502 FISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSM 561
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+HG+ E+ A ++L+ + SG Y LL ++YA +W V
Sbjct: 562 EFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVA 621
Query: 454 KVRKLMDDSDI-KKQPGCSLIEAD 476
+R +M + + KK PG S IE +
Sbjct: 622 HIRSMMKEKGVEKKYPGSSWIELE 645
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 187/546 (34%), Positives = 280/546 (51%), Gaps = 81/546 (14%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSA-LRELIYSGSVVIPGAINYAHKMFVKITE 67
SRL + C + Q AL+ +G + S L + +P A A +F ++
Sbjct: 15 SRL-RACRSASHALQCHALLLTSGHLAASPLRLSNHLLLALASVPSAAALADVVFARLPL 73
Query: 68 P---DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
P D F +NT IR A ++ P A+ + +M +C ++P+ +TF VLKAC G
Sbjct: 74 PAARDPFAWNTAIRLHAPAR-PRAALLYFARMRRCGVRPDAYTFPAVLKACGCAPGCRAG 132
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD--GDAKMDVVAWSSLTAGYA 182
VH + V+ G + F N+LI F+ D+ + +FD G D+V+W+S+ AGY
Sbjct: 133 LLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAGYV 192
Query: 183 RRGELSM---------------------------------ARSLFDEMPVRDLVSWNVMI 209
GE+ + AR LFD+MP RDLV WN MI
Sbjct: 193 GCGEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMI 252
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
GYA+ G M++A LF E+P+R+V+SW+ +I G+V CG K+ALE F+ M G RPD +
Sbjct: 253 DGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRI 312
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
+ ++ACA LG LE G+ +H + L+ ++ V+ ALIDMY KCG ++ A+ +F
Sbjct: 313 AAVGAVSACAQLGALEQGRWLH-SYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFES 371
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M +R V TW+ +I GL HGF +++ +F M+ V +++ +G+L AC+HAG V EG
Sbjct: 372 MAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEG 431
Query: 390 KKYFKLMRDEYNIEPNIRHYGV-------------------------------------- 411
+ F M+ ++ I+P + HYG
Sbjct: 432 LEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACR 491
Query: 412 -HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470
H VEL L+ +RL ++ D+SG YVLLSNIYA G W V ++RKLM D ++K G
Sbjct: 492 SHSCVELAELSVERLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGR 551
Query: 471 SLIEAD 476
S+IE D
Sbjct: 552 SVIEVD 557
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/536 (32%), Positives = 275/536 (51%), Gaps = 72/536 (13%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+ +N ++ L ++C+N+ L+QI + G D +L+ + G++ YA
Sbjct: 14 SESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYART 73
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I P+TFM+NT+IRG + S+ P +A+ LY M S+ N +TF F+LKAC+ +
Sbjct: 74 VFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSA 133
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+H I+K GF + NSL+ ++ GD+ +A +LFD + D V+W+S+ G
Sbjct: 134 SEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDG 193
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
Y + GE+ MA +F+ MP R+++SW MI
Sbjct: 194 YTKCGEIEMAYEIFNHMPERNIISWTSMI------------------------------- 222
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
SG V G K+AL +F M++ G + D+V ++S L ACADLG L+ GK +H +
Sbjct: 223 SGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIE 282
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ +L G LIDMYAKCG +E AIEVF M ++ VS W+ +I G A HG E++ F +
Sbjct: 283 IDPIL-GCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMK 341
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
MQ V P ++TF G+L ACSHAG V E K F+ M + +P+I HYG
Sbjct: 342 MQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAG 401
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
+HG++ELG+ K L+ + G Y+ L++
Sbjct: 402 LLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLAS 461
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLD 497
I+A+ GEWN+ +VR+ M + + K PGCS+I + A ++L + P +D
Sbjct: 462 IHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAH-EFLAGDESHPQIKEID 516
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 188/546 (34%), Positives = 290/546 (53%), Gaps = 79/546 (14%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S + ++C + L+Q+ A + D ++ S ++++P I+YA +F I +P
Sbjct: 25 SLILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKP 84
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
++ YN +IRG A ++P +A+ L+ +M + S++ +KFTFS VLKAC+R+ G VH
Sbjct: 85 ESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVH 144
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG--- 185
I+K GF+ N FV N+LI +ANCG + A +FDG + +VAW+S+ +GY + G
Sbjct: 145 ALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWD 204
Query: 186 -------ELSMARSLFDE---------------MPVRDLVSWNVMITG------------ 211
++ R FD+ + + +L+ ++ G
Sbjct: 205 EVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLI 264
Query: 212 --YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
YAK G+++ A +LF+E+ KRDVV+W+AMISGY K+AL +F EM+ P++V
Sbjct: 265 DMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEV 324
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
TM+S+L +CA LG E GK VH + + L G LID YAKCG I+R++EVF
Sbjct: 325 TMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTL-GTQLIDFYAKCGYIDRSVEVFKE 383
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M ++V TW+ LI GLA +G + ++ F M V+P ++TF+GVL ACSHA V++G
Sbjct: 384 MSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQG 443
Query: 390 KKYFKLMRDEYNIEPNIRHYG--------------------------------------- 410
+ F MR +++IEP I HYG
Sbjct: 444 RHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCR 503
Query: 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470
H ++E+ + + + + SGDY+LLSN YA G +VR L+ + +IKK PGC
Sbjct: 504 AHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGC 563
Query: 471 SLIEAD 476
SLIE D
Sbjct: 564 SLIELD 569
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 173/504 (34%), Positives = 278/504 (55%), Gaps = 56/504 (11%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C ++ IQ ++ F S S AL +++Y F ++ P+ F+YN
Sbjct: 59 CASMIKTNAIQDCFLVHQFISASFAL------------NSVHYPVFAFTQMENPNVFVYN 106
Query: 75 TIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
+I+G P A+ Y M E+ ++ P +TFS ++KACT + +G VH I K
Sbjct: 107 AMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWK 166
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GFE + FV+ +L+ F++ L+ A +FD + D AW+++ + AR G++ AR L
Sbjct: 167 KGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKL 226
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
F+EMP R+ +WN MI GY + G +E A LFN++P +D++SW MI+ Y + AL
Sbjct: 227 FEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDAL 286
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALID 312
++ EMR G PD+VTM ++ +ACA +G LE+GK++H + M+ G+ V G+AL+D
Sbjct: 287 AIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYV--MSQGLNLDVYIGSALVD 344
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCGS++ ++ +F + D+++ W+ +I GLA HG+AE+++ MF M+R K+ P +T
Sbjct: 345 MYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVT 404
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+ +L AC+HAG V+EG+ F M +Y+I P+IRHYG
Sbjct: 405 FISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSM 464
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+HG+ E+ A ++L+ + SG Y LL ++YA +W V
Sbjct: 465 EFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVA 524
Query: 454 KVRKLMDDSDI-KKQPGCSLIEAD 476
+R +M + + KK PG S IE +
Sbjct: 525 HIRSMMKEKGVEKKYPGSSWIELE 548
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 174/515 (33%), Positives = 281/515 (54%), Gaps = 81/515 (15%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
+H + + + CT LR LKQI + ING +D + + + S ++ P ++Y++++
Sbjct: 9 KHPTISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDN 68
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS--IKPNKFTFSFVLKACTRLLYRN 122
P F +N++IR ++S P + Y+++ + + P+ +TF+F+++ +LL
Sbjct: 69 SQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHG 128
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
G VHG VKYGFE++ V++ LIY YA
Sbjct: 129 TGSSVHGAAVKYGFEYDPHVQSGLIYM-------------------------------YA 157
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
G L +F + DLV M++ AK G++ A +LF+++ +D ++WNAMISG
Sbjct: 158 ELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISG 217
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMT 298
YV CG +++AL +F M+ G + ++V+M+S+L+AC+ LG L+ G+ H + L MT
Sbjct: 218 YVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMT 277
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
+ G ALIDMYAKCG++ +A+EVF GM++++V TWS+ IGGLA +G E+ + +F
Sbjct: 278 LTL-----GTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELF 332
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
M++ V+P EITFV VL CS G VEEG+K+F+ M Y IEP + HYG
Sbjct: 333 SLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGR 392
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
++ ++E+G LA+++++ + G YVLL
Sbjct: 393 AGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLL 452
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
SNIYA +W+RV VR+ M+ ++KQPGCS+IE
Sbjct: 453 SNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIE 487
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 179/482 (37%), Positives = 259/482 (53%), Gaps = 83/482 (17%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-SIKPNKFTFSFVLK 113
++YA +F ++ P+ F YN IIR + A+ ++ QM S P+KFTF FV+K
Sbjct: 55 VDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIK 114
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
+C LL R +G VH + K+G + + N+LI + CGD+
Sbjct: 115 SCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDM----------------- 157
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233
S A +++EM RD VSWN +I+G+ + G+M+ A E+F+E+P R +
Sbjct: 158 --------------SGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTI 203
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
VSW MI+GY G AL +F EM+ VG PD+++++S+L ACA LG LEVGK +H
Sbjct: 204 VSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIH-K 262
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+ + + NAL++MYAKCG I+ A +F M ++DV +WST+IGGLA HG
Sbjct: 263 YSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYA 322
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
+I +F +MQ+ V P +TFVGVL AC+HAG EG +YF +MR +Y++EP I HYG
Sbjct: 323 AIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLV 382
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
+H ++E+ +A ++LL + +ESG
Sbjct: 383 DLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESG 442
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA-----------DDKAFLQY 483
+YVLL+NIYA +W V VRKL+ IKK PGCSLIE D K F Q
Sbjct: 443 NYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQEFVSGDDSKPFSQE 502
Query: 484 LF 485
+F
Sbjct: 503 VF 504
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 185/580 (31%), Positives = 291/580 (50%), Gaps = 114/580 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG----AINYAHKMFVKIT 66
L ++C +++ L QI A + ++GF+ SS +LI S + G + +A ++F +I
Sbjct: 16 LLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIP 75
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
EPD FMYNT++R + S P +A+ L+ + + I PN+FT FVLKACT +
Sbjct: 76 EPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALA 135
Query: 127 VHGKIVKYGFEFNRFVR-------------------------------NSLIYFHANCGD 155
HG +VK GF FV N++I +A G+
Sbjct: 136 AHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGE 195
Query: 156 LNTASVLF------------------------DGD---------------AKMDVVAWSS 176
++ A LF +G+ +++D + ++
Sbjct: 196 VSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNA 255
Query: 177 LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW 236
L Y + G+L MA FD MP++++V+W M+ AK G ++ + F ++P+R++VSW
Sbjct: 256 LLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSW 315
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
NAMIS YV CG + L+++ MRS+G PD+ T+ +L+AC GDL GK +HC + D
Sbjct: 316 NAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRD 375
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ L N+L+DMYA+CG ++ AI +F M +++V +W+ +IG LA HG A+E++
Sbjct: 376 NFNDPGVTLL-NSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVT 434
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
FR M P EITFVG+L ACSH G +E G+ YF+ M YN+EP + HYG
Sbjct: 435 FFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLL 494
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
+HG+VE+G+L K+LL + G +V
Sbjct: 495 GRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFV 554
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
L+ N++ +W ++K+RKLM + KK G S IE +
Sbjct: 555 LICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKN 594
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 175/507 (34%), Positives = 271/507 (53%), Gaps = 71/507 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C+N R LK I A + D A LI ++YA ++ +I P+
Sbjct: 23 LLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNL 82
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F+YN +IRG + S+NP ++ Y + + + P+ T F++KAC +L MG HG+
Sbjct: 83 FIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQ 142
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+K+GFE + +V+NSL++ +A+ GD+N A +F + DVV+W+ + AGY R G+ A
Sbjct: 143 AIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSA 202
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R LFD MP R+LV+W+ MI+GYA+ EK
Sbjct: 203 RELFDRMPERNLVTWSTMISGYARNNCFEK------------------------------ 232
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
A+E FE +++ G ++ M+ ++++CA LG L +G+K H ++ + +L G A+
Sbjct: 233 -AVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLIL-GTAV 290
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMYA+CG++E+A+ VF + ++DV W+ LI GLA HG+AE+++ F EM + P +
Sbjct: 291 VDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRD 350
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
ITF VL ACSHAG VE G + F+ M+ ++ +EP + HYG
Sbjct: 351 ITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVL 410
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+H +VE+G K LL M+ + SG YVLLSNIYA +W
Sbjct: 411 KMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKD 470
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEADDK 478
V +R++M D ++K PG SLIE D K
Sbjct: 471 VTVMRQMMKDKGVRKPPGYSLIEIDGK 497
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 169/469 (36%), Positives = 260/469 (55%), Gaps = 83/469 (17%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP-------NKFT 107
+ +A ++F ++ +P+ ++N +I+ AQ+ DAV +Y +M +C P ++FT
Sbjct: 62 VTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFT 121
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
+ F+LKAC +G VH +V+ G + + V+NSLI
Sbjct: 122 YPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEM------------------ 163
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
Y R G+L++A +FDEM RD+VSWN++I+ +A+ G+M KA LFN
Sbjct: 164 -------------YTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNS 210
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P + +V+W AM+SGY G A++ F M++ G PDDV+++++L ACA LG LE+G
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGTLELG 270
Query: 288 KKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
+ + +C M + NAL++MYAKCG I++A+++F GM D+DV +WST+IGGL
Sbjct: 271 RWIYAYCKRHGMLTSTHIC---NALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGL 327
Query: 346 AFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
A HG A E++ +F EM++ KVRP ITFVG+L ACS+AG V+EG +F M D Y +EP
Sbjct: 328 AAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEP 387
Query: 405 NIRHYGV---------------------------------------HGDVELGRLANKRL 425
+ HYG HGDV+ LA +RL
Sbjct: 388 GVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERL 447
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ + D+ G+ V+L+N+YA+ W+ V RK + ++K PGCSLIE
Sbjct: 448 VELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIE 496
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 59/326 (18%)
Query: 11 LWKKCTNLRTL---KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKI 65
L K C L KQ+ V +G +S + LI Y+ + G + AHK+F ++
Sbjct: 125 LLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRA----GDLALAHKVFDEM 180
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI------------------------ 101
E D +N +I A+ A L+ M +I
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240
Query: 102 -------KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCG 154
+P+ + VL AC +L +G ++ ++G + + N+L+ +A CG
Sbjct: 241 SMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCG 300
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMI----- 209
++ A LFDG A DV++WS++ G A G A LF EM V NV+
Sbjct: 301 CIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLL 360
Query: 210 -----TGYAKQG--EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
G +G ++ N+++ P V + ++ G ++AL++ +M
Sbjct: 361 SACSYAGLVDEGLSHFDRMNDVYGVEPG--VEHYGCVVDLLGRSGQIRRALDLVRDM--- 415
Query: 263 GERPDDVTML-SLLTACADLGDLEVG 287
P D + SLL+AC GD++
Sbjct: 416 -PVPADAKVWGSLLSACRSHGDVDTA 440
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 169/469 (36%), Positives = 260/469 (55%), Gaps = 83/469 (17%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP-------NKFT 107
+ +A ++F ++ +P+ ++N +I+ AQ+ DAV +Y +M +C P ++FT
Sbjct: 62 VTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFT 121
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
+ F+LKAC +G VH +V+ G + + V+NSLI
Sbjct: 122 YPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEM------------------ 163
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
Y R G+L++A +FDEM RD+VSWN++I+ +A+ G+M KA LFN
Sbjct: 164 -------------YTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNS 210
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P + +V+W AM+SGY G A++ F M++ G PDDV+++++L ACA LG LE+G
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELG 270
Query: 288 KKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
+ + +C M + NAL++MYAKCG I++A+++F GM D+DV +WST+IGGL
Sbjct: 271 RWIYAYCKRHGMLTSTHIC---NALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGL 327
Query: 346 AFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
A HG A E++ +F EM++ KVRP ITFVG+L ACS+AG V+EG +F M D Y +EP
Sbjct: 328 AAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEP 387
Query: 405 NIRHYGV---------------------------------------HGDVELGRLANKRL 425
+ HYG HGDV+ LA +RL
Sbjct: 388 GVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERL 447
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ + D+ G+ V+L+N+YA+ W+ V RK + ++K PGCSLIE
Sbjct: 448 VELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIE 496
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 59/326 (18%)
Query: 11 LWKKCTNLRTL---KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKI 65
L K C L KQ+ V +G +S + LI Y+ + G + AHK+F ++
Sbjct: 125 LLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRA----GDLALAHKVFDEM 180
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI------------------------ 101
E D +N +I A+ A L+ M +I
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240
Query: 102 -------KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCG 154
+P+ + VL AC +L +G ++ ++G + + N+L+ +A CG
Sbjct: 241 SMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCG 300
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMI----- 209
++ A LFDG A DV++WS++ G A G A LF EM V NV+
Sbjct: 301 CIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLL 360
Query: 210 -----TGYAKQG--EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
G +G ++ N+++ P V + ++ G ++AL++ +M
Sbjct: 361 SACSYAGLVDEGLSHFDRMNDVYGVEPG--VEHYGCVVDLLGRSGQIRRALDLVRDM--- 415
Query: 263 GERPDDVTML-SLLTACADLGDLEVG 287
P D + SLL+AC GD++
Sbjct: 416 -PVPADAKVWGSLLSACRSHGDVDTA 440
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 169/469 (36%), Positives = 260/469 (55%), Gaps = 83/469 (17%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP-------NKFT 107
+ +A ++F ++ +P+ ++N +I+ AQ+ DAV +Y +M +C P ++FT
Sbjct: 62 VTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFT 121
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
+ F+LKAC +G VH +V+ G + + V+NSLI
Sbjct: 122 YPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEM------------------ 163
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
Y R G+L++A +FDEM RD+VSWN++I+ +A+ G+M KA LFN
Sbjct: 164 -------------YTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNS 210
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P + +V+W AM+SGY G A++ F M++ G PDDV+++++L ACA LG LE+G
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELG 270
Query: 288 KKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
+ + +C M + NAL++MYAKCG I++A+++F GM D+DV +WST+IGGL
Sbjct: 271 RWIYAYCKRHGMLTSTHIC---NALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGL 327
Query: 346 AFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
A HG A E++ +F EM++ KVRP ITFVG+L ACS+AG V+EG +F M D Y +EP
Sbjct: 328 AAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEP 387
Query: 405 NIRHYGV---------------------------------------HGDVELGRLANKRL 425
+ HYG HGDV+ LA +RL
Sbjct: 388 GVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERL 447
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ + D+ G+ V+L+N+YA+ W+ V RK + ++K PGCSLIE
Sbjct: 448 VELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIE 496
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 59/326 (18%)
Query: 11 LWKKCTNLRTL---KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKI 65
L K C L KQ+ V +G +S + LI Y+ + G + AHK+F ++
Sbjct: 125 LLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRA----GDLALAHKVFDEM 180
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI------------------------ 101
E D +N +I A+ A L+ M +I
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240
Query: 102 -------KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCG 154
+P+ + VL AC +L +G ++ ++G + + N+L+ +A CG
Sbjct: 241 SMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCG 300
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMI----- 209
++ A LFDG A DV++WS++ G A G A LF EM V NV+
Sbjct: 301 CIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLL 360
Query: 210 -----TGYAKQG--EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
G +G ++ N+++ P V + ++ G ++AL++ +M
Sbjct: 361 SACSYAGLVDEGLSHFDRMNDVYGVEPG--VEHYGCVVDLLGRSGQIRRALDLVRDM--- 415
Query: 263 GERPDDVTML-SLLTACADLGDLEVG 287
P D + SLL+AC GD++
Sbjct: 416 -PVPADAKVWGSLLSACRSHGDVDTA 440
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 175/510 (34%), Positives = 263/510 (51%), Gaps = 77/510 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP-D 69
L C+NL+ L Q A + + D+ L I S S + G YA+ +F +T P +
Sbjct: 17 LLNHCSNLKHLHQTHAFMLCRALDHDNLLLSLFIQSSSSL--GFSLYAYSLFTSLTHPPN 74
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F+YNTIIR + S P ++FL+ +++ ++P+ ++F F LKA RL G H
Sbjct: 75 IFLYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTGLQFHS 134
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ +++G + V SLI +++ +S
Sbjct: 135 QAIRFGLHSHLHVLVSLIRMYSS--------------------------------SHISD 162
Query: 190 ARSLFDEMPV--RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
AR LFD +P+ R++ WN M+T YAK +M A LF+ +P+R+++SW A+ISGY
Sbjct: 163 ARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHIN 222
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
QA+ +F M+ PD++T+L++L+ACA LG LE+G+ + +D+ V
Sbjct: 223 RPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIR-NYIDIHGLHRNVPLH 281
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
NALIDMYAK G+I+RA+ +F M+ + + TW+T+I GLA HG +++ MF M+R +V+
Sbjct: 282 NALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVK 341
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P EITF+ VL ACSH G V+ + +F MR Y I+P I HYG
Sbjct: 342 PNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGYLQEAQQ 401
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
HGD LG K L+ + + SG+Y LLSNIYAS G
Sbjct: 402 LLQQMPFEPNAAIWGSLLAASYTHGDAMLGERTLKHLIELEPNNSGNYALLSNIYASLGR 461
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
W VRK+M D +KK PG S IE +++
Sbjct: 462 WKASRIVRKMMRDRGVKKIPGGSFIEVNNR 491
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 193/569 (33%), Positives = 284/569 (49%), Gaps = 113/569 (19%)
Query: 20 TLKQIQALVTINGFNSDSSALRELIYSGSVVIP--GAINYAHKMFVKITEPDTFMYNTII 77
+L+ I A + G ++ + AL +LI V+ P + YA +F I EP+ ++NT+
Sbjct: 2 SLRMIHAQMIKTGLHNTNYALSKLI-EFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMF 60
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
RG A S +P+ A++LY M + PN +TF F+LK+C + G +HG ++K G++
Sbjct: 61 RGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 120
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDA------------------------KM---- 169
+ +V SLI + G L A +FD + KM
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 180
Query: 170 ---DVVAWSSLTAGYARRGELSMARSLFDEMPV--------------------------R 200
DVV+W+++ +GYA G A LF EM R
Sbjct: 181 PIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 240
Query: 201 DLVSW-------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
+ SW N +I Y K GE+E A LF + +DV+SWN +I GY
Sbjct: 241 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL-H 306
+ K+AL +F+EM GE P+DVTMLS+L ACA LG +E+G+ +H + GVA H
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 360
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
+LIDMYAKCG IE A +VF + +R +S+W+ +I G A HG A + +F M++ ++
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 420
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------- 410
P +ITFVG+L ACSH+G ++ G+ F+ M+++Y I P + HYG
Sbjct: 421 EPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAE 480
Query: 411 -----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
+HG+VELG + L+ + G YVLLSNIYA+ G
Sbjct: 481 EMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAG 540
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
WN V K+R L++D +KK PGCS IE D
Sbjct: 541 RWNEVAKIRALLNDKGMKKVPGCSSIEID 569
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 175/499 (35%), Positives = 269/499 (53%), Gaps = 79/499 (15%)
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
NY +F +I +P+ F++NT+IRG + DA+ Y M PN FTF FVLKAC
Sbjct: 63 NYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKAC 122
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
RLL +G +H +VK GF+ + FV+ SL+ +A CG L A +FD +VV+W+
Sbjct: 123 ARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWT 182
Query: 176 SLTAGYARRGELSMARSLFDEM-------------------------------------- 197
++ +GY G+ A +F +
Sbjct: 183 AIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEM 242
Query: 198 -PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
VR++ ++ YAK G MEKA +F+ +P++D+VSW AMI GY L G+ K+A+++F
Sbjct: 243 GMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLF 302
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
+M+ +PD T++ +L+ACA LG LE+G+ V L+D + + G ALID+YAK
Sbjct: 303 LQMQRENVKPDCYTVVGVLSACARLGALELGEWVS-GLVDRNEFLYNPVLGTALIDLYAK 361
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CGS+ RA EVF GM+++D W+ +I GLA +G+ + S +F ++++L ++P TF+G+
Sbjct: 362 CGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGL 421
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------- 410
L C+HAG V+EG++YF M +++ P+I HYG
Sbjct: 422 LCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEA 481
Query: 411 -------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
+H D +L LA K+L+ + SG+YVLLSNIY++ +W+ KVR
Sbjct: 482 NAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRL 541
Query: 458 LMDDSDIKKQPGCSLIEAD 476
M++ I+K PGCS IE D
Sbjct: 542 SMNEKRIQKPPGCSWIEVD 560
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 178/401 (44%), Gaps = 51/401 (12%)
Query: 13 KKCTNLRTLK---QIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITE 67
K C L L+ +I LV GF+ D L+ Y+ G + AHK+F I +
Sbjct: 120 KACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKC----GYLEDAHKVFDDIPD 175
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
+ + II G +A+ ++ ++ + ++ P+ FT VL ACT+L N G +
Sbjct: 176 KNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWI 235
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H I++ G N FV SL+ +A CG++ A +FDG + D+V+W ++ GYA G
Sbjct: 236 HKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLP 295
Query: 188 SMARSLFDEMP-----------------------------VRDLVSWN----------VM 208
A LF +M V LV N +
Sbjct: 296 KEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTAL 355
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
I YAK G M +A E+F + ++D V WNA+ISG + G K + +F ++ +G +PD
Sbjct: 356 IDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDG 415
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
T + LL C G ++ G++ ++ S + H ++D+ + G ++ A ++
Sbjct: 416 NTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIR 475
Query: 329 GM-RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
M + + W L+G H + +A Q +++ P
Sbjct: 476 NMPMEANAIVWGALLGACRIH--RDTQLAELALKQLIELEP 514
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 184/548 (33%), Positives = 281/548 (51%), Gaps = 85/548 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + CTN++ LKQI A I+ + + ++I S + ++YA ++F + EPD
Sbjct: 12 LIETCTNIQQLKQIHAKSIISSLSYTQFIITKII--NSFLSHACLDYATQVFNQTQEPDG 69
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKC-SIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F+YN +IR + SQ P A+ +Y +M C +I +K+T+ FV KAC G VHG
Sbjct: 70 FIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHG 129
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
IV+ G+E + F+++SL+ F+ CG++ A +FD DVV W++L GYAR+G +
Sbjct: 130 VIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLD 189
Query: 190 ARSLFDEMP-----------------------------------VRDLVSWN------VM 208
+ +F EM ++D+V +
Sbjct: 190 SFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAAL 249
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
I Y K G ++ A +LF+E+P+++ V WN++I GY G + +E+ EM +PD
Sbjct: 250 INLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDR 309
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
T+ +L+ACA +G +G VH G+ V G ALIDMYAKCG I A +VF
Sbjct: 310 FTVSGVLSACAQMGAFNLGNWVH--RFAEKKGIWDVFIGTALIDMYAKCGFIGAARKVFD 367
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
M +R+V+TW+ ++ G A HG AE +I +F EM+ RP ITF+ VL AC+H+G VE
Sbjct: 368 QMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVEN 427
Query: 389 GKKYFKLMRDEYNIEPNIRHYG-------------------------------------- 410
GK+YF LM Y I P + HYG
Sbjct: 428 GKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSAC 487
Query: 411 -VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469
+HG++E+G A ++ + + G YV+L+N+YAS +NRV+ VR++M + I K G
Sbjct: 488 SIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHG 547
Query: 470 CSLIEADD 477
CS+IE D
Sbjct: 548 CSMIEIGD 555
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 178/518 (34%), Positives = 272/518 (52%), Gaps = 91/518 (17%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAH--KMFVKITEPDT 70
+ C R L + L + S ++++ V G AH ++F + P+
Sbjct: 18 RACATFRDLLRAHGLAVRLCLSQSSYVATQIVH----VCNGHGRAAHAARVFAHVPAPNL 73
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP---------NKFTFSFVLKACTRLLYR 121
++N +I+ AQ+ DAV +Y +M +C P ++FT+ F+LKAC L
Sbjct: 74 HLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAAS 133
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
+G VH + + G E + V+NSLI + CGD
Sbjct: 134 QLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGD-------------------------- 167
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
LS+AR +FD M +D VSWN +I+ +A+ G+M KA ELF+ +P + VVSW A++S
Sbjct: 168 -----LSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVS 222
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV--HCTLLDMTS 299
GY G A+E+F +M+ G PDDV+++++L ACA LG LE+G+ + +C M
Sbjct: 223 GYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGM-- 280
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ K+ NAL++MYAKCG IE A+++F GM ++DV +WST IGGLA HG A E++ +F
Sbjct: 281 -LGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFE 339
Query: 360 EMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------- 411
M R +V P ITFVG+L ACSHAG ++EG +YF M++EY +EP++ HYG
Sbjct: 340 VMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGR 399
Query: 412 --------------------------------HGDVELGRLANKRLLNMRKDESGDYVLL 439
H DV+ +A +RL+ + ++ G+ V+L
Sbjct: 400 SGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVML 459
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+N+YA+ G W V RK + +K PGCS+IE D+
Sbjct: 460 ANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEVDN 497
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 185/553 (33%), Positives = 294/553 (53%), Gaps = 78/553 (14%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
+C++L +KQI A V + +S ++LI + S+ + A +F +I +PD +Y
Sbjct: 26 RCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLC--RQMTLAVNVFNQIQDPDVLLY 83
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
NT+IR ++ PL A ++ +M+ + + FT+ F+LKAC+ ++ + +H ++ K
Sbjct: 84 NTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEK 143
Query: 134 YGFEFNRFVRNSLIYFHANCG---------------------------------DLNTAS 160
GF + FV NSLI + CG +L A
Sbjct: 144 MGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEAR 203
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK 220
LFD + D V+W+++ GY + GE++ A LF++MP R++VSW+ M+ GY+K G+M+
Sbjct: 204 RLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDM 263
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A LF+++P +++V W MISGY G+ K A+ ++ +M G + DD T++S+L+ACA
Sbjct: 264 ARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAV 323
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
G L +GK+VH + ++ T NALIDMYAKCGS+E A+ +F GM +DV +W+
Sbjct: 324 SGLLGLGKRVHAS-IERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNA 382
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
+I GLA HG E+++ +F M+ P ++TFVGVL AC+HAG V+EG YF M +Y
Sbjct: 383 IIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDY 442
Query: 401 NIEPNIRHYGVHGDVELGR-------------------------------------LANK 423
+ P + HYG D+ LGR LA +
Sbjct: 443 GVPPEVEHYGCMVDL-LGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEE 501
Query: 424 ---RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
RL+ +SG+ +LSNIYA+ G+W+ +R M + I+K G S IE DD+
Sbjct: 502 VFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVH 561
Query: 481 LQYLFNLKPKPNS 493
+F+ + P S
Sbjct: 562 EFTVFD-RSHPKS 573
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 195/583 (33%), Positives = 287/583 (49%), Gaps = 113/583 (19%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG--AINYAHKMFV 63
H S L C L++L+ I A + G ++ + AL +LI ++ P + YA +F
Sbjct: 34 HPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLI-EFCILSPHFEGLPYAISVFK 92
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
I EP+ ++NT+ RG A S +P+ A+ LY M + PN +TF FVLK+C +
Sbjct: 93 TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKE 152
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFH-------------------------------AN 152
G +HG ++K G + + +V SLI + A+
Sbjct: 153 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYAS 212
Query: 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF----------DEMPVRDL 202
G + A LFD DVV+W+++ +GYA G A LF DE + +
Sbjct: 213 RGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 272
Query: 203 VS----------------W-------------NVMITGYAKQGEMEKANELFNEVPKRDV 233
VS W N +I Y+K GE+E A LF +P +DV
Sbjct: 273 VSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDV 332
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
+SWN +I GY + K+AL +F+EM GE P+DVTMLS+L ACA LG +++G+ +H
Sbjct: 333 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY 392
Query: 294 LLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ GV +LIDMYAKCG IE A +VF + + +S+W+ +I G A HG A+
Sbjct: 393 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRAD 452
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
S +F M+++ ++P +ITFVG+L ACSH+G ++ G+ F+ M +Y + P + HYG
Sbjct: 453 ASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCM 512
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG+VELG + L+ + +
Sbjct: 513 IDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENP 572
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YVLLSNIYAS G WN V K R L++D +KK PGCS IE D
Sbjct: 573 GSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/431 (22%), Positives = 172/431 (39%), Gaps = 58/431 (13%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
+Q+ + +GF S+ + LI YS G + A +F ++ D +NT+I G
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKC----GELETACGLFERLPYKDVISWNTLIGG 341
Query: 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY--GFE 137
+A+ L+ +M + PN T +L AC L ++G +H I K G
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVT 401
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+R SLI +A CGD+ A +F+ + +W+++ G+A G + LF M
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRM 461
Query: 198 P----VRDLVSWNVMITGYAKQGEMEKANELFNEV-------PKRDVVSWNAMISGYVLC 246
D +++ +++ + G ++ +F + PK + + MI L
Sbjct: 462 RKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLE--HYGCMID---LL 516
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM--TSGVAKV 304
G + E E + + PD V SLL AC G++E+G+ L+ + + + V
Sbjct: 517 GHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYV 576
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDV------------STWSTLIGGLAFHGFAE 352
L L ++YA G + + D+ + S I G FH
Sbjct: 577 L----LSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNR 632
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH 412
E M EM+ V AG V + + + M +E+ E +RH+
Sbjct: 633 EIYGMLEEME---------------VLLEKAGFVPDTSEVLQEMEEEWK-EGALRHHSEK 676
Query: 413 GDVELGRLANK 423
+ G ++ K
Sbjct: 677 LAIAFGLISTK 687
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 195/583 (33%), Positives = 282/583 (48%), Gaps = 113/583 (19%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG--AINYAHKMFV 63
H S L C L++L+ I A + G ++ + AL L+ ++ P + YA +F
Sbjct: 3 HPSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLL-EFCILSPNFDGLPYAISVFE 61
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
I EP+ ++NT+ RG A S +P+ A+ LY M + PN +TF F+LK+C +L
Sbjct: 62 TIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKE 121
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA---------------- 167
G +HG ++K G+E + +V SLI + G A +FDG +
Sbjct: 122 GQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYAS 181
Query: 168 --------KM-------DVVAWSSLTAGYARRGELSMARSLFDEMPV------------- 199
KM DVV+W+++ +GYA G A LF EM
Sbjct: 182 RGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTV 241
Query: 200 -------------RDLVSW-------------NVMITGYAKQGEMEKANELFNEVPKRDV 233
R + SW N +I Y+K GE+E A LF + +DV
Sbjct: 242 VSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDV 301
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
+SWN MI GY + K+AL +F+EM GE P+DVTMLS+L ACA LG ++ G+ +H
Sbjct: 302 ISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVY 361
Query: 294 LLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ GV +LIDMYAKCG IE A +VF M R +S + +I G A HG A
Sbjct: 362 IDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRAN 421
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+ +F M++ + P +ITFVG+L ACSH+G ++ G++ F+ M Y I P + HYG
Sbjct: 422 AAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCM 481
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG+VELG ++L+ + +
Sbjct: 482 IDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENP 541
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YVLLSNIYA+ G WN V +R L++D +KK PGCS IE D
Sbjct: 542 GSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEID 584
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 179/518 (34%), Positives = 273/518 (52%), Gaps = 75/518 (14%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
T+ + + L C + L QI + + D+ L + I + + + G +YA +F
Sbjct: 22 TSSLQFTSLLSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTSL--GLSSYAFSIF 79
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
T PD +YNT I+ +++ +P++A++LYT++ ++P+ ++ VLKA +L
Sbjct: 80 SNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVE 139
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
+G +H + V + + V SLI +++CG ++ A LFD DV W+++ AGY
Sbjct: 140 VGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYV 199
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
+ GEL AR +F+EMP R+++SW +I GYA+ +A ELF ++ +V
Sbjct: 200 KVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEV--------- 250
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
PD++ ML++L+ACADLG LE+G+ +H + G+
Sbjct: 251 ----------------------EPDEIAMLAVLSACADLGALELGEWIHNYI--EKHGLC 286
Query: 303 KVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+++ NALIDMYAK G+I RA+EVF M+ + V TWST+I LA HG E+I MF M
Sbjct: 287 RIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRM 346
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
++ KVRP E+TFV +L ACSH G V+ G+ YF M+ Y IEP I HYG
Sbjct: 347 EKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGY 406
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
H D EL +LA K L + SG+YVLLSN
Sbjct: 407 LQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNT 466
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
YA+ G+WN VRKLM ++ +KK PG S+IE ++ +
Sbjct: 467 YAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINNIVY 504
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 191/558 (34%), Positives = 289/558 (51%), Gaps = 87/558 (15%)
Query: 4 NRHRSSRL--WKKCTNLRTLKQIQALV--TINGFNSDSSALRELIYSGSVVIPGAINYAH 59
N H+ S L + C +++ LKQI A + T+ ++ + L + +P YA
Sbjct: 19 NPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYAL 78
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQN-PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
+ ++ P+ +YN IIRG A S N ++ + +Y QM I P+ +T FVLKAC
Sbjct: 79 SLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAES 138
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
G VHG+ +K G + +V N+L+ +A C + +A +FD + D+V+W+++
Sbjct: 139 RAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMI 198
Query: 179 AGY-----------------------------------ARRGELSMARSLFDEMPVR--- 200
GY AR G+L + R L + +R
Sbjct: 199 QGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYI-IRNSN 257
Query: 201 ---DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
D+ N ++ Y K G+ A ++F E+P ++VVSWN+MISG G K++L MF
Sbjct: 258 VNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFR 317
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
+M+ +G +PDDVT++++L +CA+LG LE+GK VH LD A GNAL+DMYAKC
Sbjct: 318 KMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVH-AYLDRNQIRADGFIGNALVDMYAKC 376
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
GSI++A VF M +DV +++ +I GLA HG +++ +F EM ++ + P E+TFVGVL
Sbjct: 377 GSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVL 436
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------- 410
ACSH G VEEG+KYF+ M YN+ P + HYG
Sbjct: 437 TACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPD 496
Query: 411 ------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
+HG VELG K++ + + G YVL+SNIY+S W K+RK
Sbjct: 497 AFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKT 556
Query: 459 MDDSDIKKQPGCSLIEAD 476
M + +++K PGCS IE D
Sbjct: 557 MKERNLEKTPGCSSIELD 574
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 172/490 (35%), Positives = 260/490 (53%), Gaps = 72/490 (14%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
+ YA +F +I +NTII+ ++Q D + L+ ++ P+ FT V+K
Sbjct: 63 LGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKG 121
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C RL G +HG +K GF + FV+ SL+ ++ CG+++ A +FDG DVV W
Sbjct: 122 CARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLW 181
Query: 175 SSLTAGYARRGELSMA-------------------------------RSLFDEMPVRDLV 203
+SL GYAR GE+ +A R LFD+MP R+LV
Sbjct: 182 NSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLV 241
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN MI GY K G+ + A ELF ++P D+V+WN MI+GY L G A++MF M +G
Sbjct: 242 SWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLG 301
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
RP T++S+L+A + L L G+ +H + + +L G +LI+MYAKCG IE A
Sbjct: 302 SRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGIL-GTSLIEMYAKCGCIESA 360
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+ VF ++ + V W+ +I GL HG A ++A+F EM + ++P I F+GVL AC+HA
Sbjct: 361 LTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHA 420
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------------------------- 411
G V++G++YF +M +EY IEP + HYG
Sbjct: 421 GLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMS 480
Query: 412 -------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
HG +++G A +R++ + + G Y+LLSN+YA+ G W +V VR++M
Sbjct: 481 LLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGF 540
Query: 465 KKQPGCSLIE 474
+K PGCS +E
Sbjct: 541 RKDPGCSSVE 550
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTML 272
K ++ A +F+ + +R ++ WN +I YV + + +F E+ V E PD+ T+
Sbjct: 59 KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL--VHEYLPDNFTLP 116
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
++ CA LG ++ GK++H L + G + G +L++MY+KCG I+ A +VF GM D
Sbjct: 117 CVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQG-SLVNMYSKCGEIDCARKVFDGMID 175
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
+DV W++LI G A G + ++ +F EM + G+ S GKVE +K
Sbjct: 176 KDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGL----SKCGKVESARKL 231
Query: 393 FKLM 396
F M
Sbjct: 232 FDQM 235
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 136/317 (42%), Gaps = 56/317 (17%)
Query: 121 RNMGFC-------VHGKIVKYGFEFNRFVRNSLIYFHAN--CGDLNTASVLFDGDAKMDV 171
+ MG C +H +K + FV + L+ +++ DL A +FD + +
Sbjct: 19 QRMGLCAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSL 78
Query: 172 VAWSSLTAGYARRGELSMARSLFDE-----------MPV--------------------- 199
+ W+++ Y LF E +P
Sbjct: 79 IHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLA 138
Query: 200 ------RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
D+ ++ Y+K GE++ A ++F+ + +DVV WN++I GY CG AL
Sbjct: 139 LKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIAL 198
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
++FEEM ER D + L+ + G +E +K L D ++ NA+I+
Sbjct: 199 QLFEEMP---ER-DAFSWTVLVDGLSKCGKVESARK----LFDQMP-CRNLVSWNAMING 249
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
Y K G + A+E+F M D+ TW+ +I G +G +++ MF M +L RP+ T
Sbjct: 250 YMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATL 309
Query: 374 VGVLVACSHAGKVEEGK 390
V VL A S + +G+
Sbjct: 310 VSVLSAVSGLAVLGKGR 326
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 69/145 (47%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F ++ D +N +I G + +DAV ++ M K +P+ T VL
Sbjct: 254 GDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVL 313
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A + L G +H + K GFE + + SLI +A CG + +A +F K V
Sbjct: 314 SAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVG 373
Query: 173 AWSSLTAGYARRGELSMARSLFDEM 197
W+++ G G + A +LF EM
Sbjct: 374 HWTAIIVGLGIHGMANHALALFLEM 398
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 175/501 (34%), Positives = 278/501 (55%), Gaps = 84/501 (16%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
K+I A + ++G + S + +++ + G ++YA ++F +++ P+ F+YN+IIR
Sbjct: 27 KKIHACIIVHGLSQSSFMVTKMVDLCDKL--GDMDYATRLFNQVSNPNVFLYNSIIRAYT 84
Query: 82 QSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
+ D + +Y Q+ + +I+ P++FTF F+ K+C L +G VHG + K+G F+
Sbjct: 85 HNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHV 144
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
N+LI D+ Y + +L A +FDEM R
Sbjct: 145 VTENALI-------DM------------------------YMKFDDLVDAHKVFDEMSER 173
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D++SWN +++GYA+ G+M+KA LF+ + + +VSW AMISGY G +A++ F EM+
Sbjct: 174 DVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQ 233
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCT-----LLDMTSGVAKVLHGNALIDMYA 315
G PD+++++S+L +CA LG LE+GK +H LL T GV NALI+MY+
Sbjct: 234 LAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQT-GVC-----NALIEMYS 287
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
KCG + +AI++F + +DV +WST+I G A+HG A + F EMQR KV+P ITF+G
Sbjct: 288 KCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLG 347
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------- 410
+L ACSH G ++G KYF +MR +Y IEP I HYG
Sbjct: 348 LLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVK 407
Query: 411 --------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
G++++ +A L+ + D+ G+YVLL+NIYA G+W V ++R
Sbjct: 408 PDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLR 467
Query: 457 KLMDDSDIKKQPGCSLIEADD 477
K++ ++KK PGCSLIE ++
Sbjct: 468 KIIRKENMKKTPGCSLIEVNN 488
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 173/532 (32%), Positives = 280/532 (52%), Gaps = 75/532 (14%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKM 61
R +H + L CT L+ +KQI A + + G ++ + + + ++ ++YA+K+
Sbjct: 6 RIAKHPTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKL 65
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM---EKCSIKPNKFTFSFVLKACTRL 118
P F N++IR ++S P + Y + ++ P+ +TF+F+++ C +L
Sbjct: 66 LNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQL 125
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
G CVHG ++K+GFE + V+ L++
Sbjct: 126 QAHVTGLCVHGAVIKHGFELDPHVQTGLVFM----------------------------- 156
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
YA G LS ++FD DLV+ M+ AK G+++ A ++F+E+P+RD V+WNA
Sbjct: 157 --YAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNA 214
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MI+GY CG +++AL++F M+ G + ++V+M+ +L+AC L L+ G+ VH +
Sbjct: 215 MIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYK 274
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
+ L G AL+DMYAKCG+++RA++VF GM++R+V TWS+ IGGLA +GF EES+ +F
Sbjct: 275 VRMTVTL-GTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLF 333
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV--- 415
+M+R V+P ITF+ VL CS G VEEG+K+F MR+ Y I P + HYG+ D+
Sbjct: 334 NDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGR 393
Query: 416 ------------------------------------ELGRLANKRLLNMRKDESGDYVLL 439
ELG +A ++++ + G YVLL
Sbjct: 394 AGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLL 453
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKP 491
SNIYA W V +R+ M +KK PGCS+IE D + +++ K P
Sbjct: 454 SNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVH-EFIVGDKSHP 504
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 273/512 (53%), Gaps = 72/512 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L K C +++ LKQIQ + GF+ L + + + G ++YA ++F I P
Sbjct: 38 LLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGL 97
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F+YN +I+ ++ + AV L+ Q+ + + P+ FT+ FV KA L G V+G
Sbjct: 98 FIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGF 157
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA--RRGE-- 186
+VK G EF+ +V NSL+ +A G + +F+ + DVV+W+ L +GY RR E
Sbjct: 158 VVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDA 217
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ + R +F++MP++ ++ W M++GY G++++A ELF P RDVV W AMI+GYV
Sbjct: 218 VDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQF 277
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
A+ +F EM+ PD T+++LLT +
Sbjct: 278 NRFDDAVALFREMQIKRVSPDRFTLVALLT--------------------------DAVV 311
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
G ALI+MYAKCG IE+++E+F G++++D ++W+++I GLA +G +++ +F EM + V
Sbjct: 312 GTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGV 371
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------- 410
+P +ITF+GVL ACSH G VEEG+K+F+ M Y IEP + HYG
Sbjct: 372 KPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAE 431
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
HG+VE+G KRL+ + +S + LL+NIYA
Sbjct: 432 ELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYA 491
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
S W V KVR+ M D +KK PGCS +E +
Sbjct: 492 SADRWEDVTKVRRKMKDLGVKKVPGCSSVEVN 523
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 187/560 (33%), Positives = 286/560 (51%), Gaps = 89/560 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L CT++ KQ AL+ + +LI ++ G +NYA K+F ++ PD
Sbjct: 17 LKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDP 76
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F+ NT+IRG A+SQNP +AV LY M + + + +T+ FVL AC RL +G H +
Sbjct: 77 FICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCE 136
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++K GF + FV N+LI F+ NCG A +FD DVV W+ + + +G A
Sbjct: 137 VLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKA 196
Query: 191 RSLFDEMPVRD--------LVSW--------------------------------NVMIT 210
L DEM D +VS N ++
Sbjct: 197 FDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILD 256
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
Y K ++E A E+FN + ++DV+SW +M+SG G ++AL +F++M+ D++T
Sbjct: 257 MYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEIT 316
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
++ +L+ACA G L+ GK +H L+D ++ AL+DMYAKCGSI+ A++VF M
Sbjct: 317 LVGVLSACAQTGALDQGKYIH-LLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRM 375
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
R R+V TW+ LIGGLA HG E++I++F +M+ K+ P ++TF+ +L ACSHAG V+EG
Sbjct: 376 RVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGL 435
Query: 391 KYFKLMRDEYNIEPNIRHYGV--------------------------------------- 411
F+ M++++ IEP + HYG
Sbjct: 436 AMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRS 495
Query: 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
G +L +R++ + D G YV+LSN+YA +W+ K+RK M + I+K PGCS
Sbjct: 496 GGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCS 555
Query: 472 LIE---------ADDKAFLQ 482
IE A D++ LQ
Sbjct: 556 WIELNGMIHQFVAGDRSHLQ 575
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 144/330 (43%), Gaps = 26/330 (7%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I A ++F +I E D + +++ G A+S +A+ L+ +M+ I+ ++ T VL A
Sbjct: 264 IESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSA 323
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C + + G +H I K+ + + +L+ +A CG ++ A +F +V W
Sbjct: 324 CAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTW 383
Query: 175 SSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
++L G A G A SLFD+M + D V++ ++ + G +++ +F +
Sbjct: 384 NALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKN 443
Query: 231 RDVVSWNAMISGYV---LCGMNK--QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+ + G V LC K AL E M + + V +LL AC G +
Sbjct: 444 KFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPI---KANSVLWATLLGACRSGGHFD 500
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS-----TWST 340
+ +K+ ++++ L ++YA + A+++ M+++ + +W
Sbjct: 501 LAEKIGRRVIELEPDSCG--RYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIE 558
Query: 341 L-------IGGLAFHGFAEESIAMFREMQR 363
L + G H E+ AM EM R
Sbjct: 559 LNGMIHQFVAGDRSHLQTEQIYAMIEEMTR 588
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 170/492 (34%), Positives = 256/492 (52%), Gaps = 74/492 (15%)
Query: 30 INGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE-PDTFMYNTIIRG-SAQSQNPL 87
+ ++D+ L I++ S + G +YA+ +F IT PD ++YN II+ S+ +P
Sbjct: 3 LRALDTDNLLLSRFIHACSSL--GFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPK 60
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147
++FLY ++ ++P+ ++F F LKA TR G +H + +++G + V + +
Sbjct: 61 ASIFLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFV 120
Query: 148 YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR--DLVSW 205
+++ G G + AR +FD M + D+ W
Sbjct: 121 QMYSSFGS-----------------------------GCICDARKMFDGMSMSTGDVALW 151
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N M+ GYAK G++ A +LF +P+R+V+SW A+I+GY A+ +F M+
Sbjct: 152 NAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVE 211
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD++ ML LTACA LG LE+G+ + + + + NALIDMYAK G I+ A++
Sbjct: 212 PDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQ 271
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VF M + + TW+T+I GLA HG E++ MF M+R +V+P +ITF+ +L ACSH G
Sbjct: 272 VFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGL 331
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYG----------------------------------- 410
V+ G+ YF M Y IEP I HYG
Sbjct: 332 VQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLL 391
Query: 411 ----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
HGD ELG LA + LL + D SG+Y LLSNIYASRG WN VRK+M D+ +KK
Sbjct: 392 AACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNESRVVRKVMWDAGVKK 451
Query: 467 QPGCSLIEADDK 478
PG SLIE +++
Sbjct: 452 MPGGSLIEVNNR 463
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 185/515 (35%), Positives = 268/515 (52%), Gaps = 72/515 (13%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHK 60
+ ++ S L +K + LKQIQ+ +T+ D A ++I ++ YA +
Sbjct: 8 KASKKTISLLDQKGLTISQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAER 67
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F+ + TF++NT+++ + + A LY M + + PN FTFSFV++AC +
Sbjct: 68 LFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFN 127
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
MG C HG++VK+G+E FV+N LI+ +ANCG ++ A +FD K DVV W+ L +G
Sbjct: 128 LQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISG 187
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
Y G++ +AR LFD MP ++ VSW +I GY +
Sbjct: 188 YLNSGQVLIARELFDRMPEKNPVSWGALIAGYVR-------------------------- 221
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
G K+ALE+F +M+ G R + +++ LTACA LG L+ G+ +H +
Sbjct: 222 -----IGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMS 276
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ ++L G ALIDMYAKCG IE A VF M DRDV ++ LI GLA H +E +I +F
Sbjct: 277 LDRML-GTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNR 335
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
MQ V P E+TFV VL ACS G V+EG + F+ M + Y IEP I+HYG
Sbjct: 336 MQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAG 395
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
VHGDV+LG L+ D G +VLLSN
Sbjct: 396 KIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQRCLDHGGVHVLLSN 455
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+YAS +W K+RK M+D +I+K PGCS IE +
Sbjct: 456 MYASADKWEDASKIRKKMEDKNIRKLPGCSSIEVN 490
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 186/583 (31%), Positives = 286/583 (49%), Gaps = 114/583 (19%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H + L +C+ + LKQI A + G D + LI + ++ +++YA ++F +I
Sbjct: 36 HPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQI 95
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMG 124
P+ + +NT+IR A S NP ++ ++ +M S P+KFTF F++KA + L G
Sbjct: 96 PHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTG 155
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
HG ++K + F+ NSLI+F+A CG+L +F + DVV+W+S+ + +
Sbjct: 156 KAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQG 215
Query: 185 GELSMARSLFDEMPVRDLVS----------------------W----------------- 205
G A LF EM +++ W
Sbjct: 216 GCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLS 275
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVS------------------------------ 235
N M+ Y K G +E A LF+++P++D+VS
Sbjct: 276 NAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIA 335
Query: 236 -WNAMISGYVLCGMNKQALEMFEEMR-SVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
WNA+IS Y CG K+ALE+F E++ S +PD+VT++S L+ACA LG +++G +H
Sbjct: 336 AWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVY 395
Query: 294 LLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ G+ H +LIDMY KCG +++A+ VF + +DV WS +I GLA HG +
Sbjct: 396 I--KKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGK 453
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
++IA+F +MQ KV+P +TF +L ACSH G VEEG+ +F M Y + P ++HY
Sbjct: 454 DAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACM 513
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+H +V L A +L+ +
Sbjct: 514 VDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNH 573
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YVLLSNIYA G+W+RV +RKLM D +KK+PGCS IE D
Sbjct: 574 GAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVD 616
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 185/601 (30%), Positives = 293/601 (48%), Gaps = 111/601 (18%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H L + C ++ L+Q+ G N++ ++ G YA ++F +I
Sbjct: 40 HPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEI 99
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
EP+ F++NT+IRG ++ P V LY +M + +KP+++TF F+ K TR + G
Sbjct: 100 PEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGR 159
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG ++K+G ++N FV +L+ + CG L+TA +FD K DV+ W+ + + Y + G
Sbjct: 160 QLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVG 219
Query: 186 ELSMARSLFDEMPVR---------------------------------------DLVSWN 206
+ +R LF M + +LV N
Sbjct: 220 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLEN 279
Query: 207 VMITGYAKQGEMEK-------------------------------ANELFNEVPKRDVVS 235
MI YA GEM+ A F+++P++D VS
Sbjct: 280 AMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVS 339
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
W AMI GY+ K+ALE+F M++ +PD+ TM+S+LTACA LG LE+G+ + T +
Sbjct: 340 WTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIR-TYI 398
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
D + NALIDMY KCG +++A +F M RD TW+ +I GLA +G E+++
Sbjct: 399 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 458
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
MF M + + P EIT++GVL AC+H G V++G+KYF M ++ IEPNI HYG
Sbjct: 459 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 518
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
V+ + ++ + K++L + D Y
Sbjct: 519 LARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVY 578
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
VLL NIYA+ WN + ++R++M D IKK PGCSLIE + + +++ + P + N+
Sbjct: 579 VLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVH-EFVAGDRSHPQTKNI 637
Query: 497 D 497
D
Sbjct: 638 D 638
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/502 (33%), Positives = 273/502 (54%), Gaps = 47/502 (9%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
L QI A + I+ +S S +LI S S + +IN++ +F + F +N +IRG
Sbjct: 97 LHQIHAQIIIHNLSSSSLITTQLISSSS--LRKSINHSLAVFNHHKPKNLFTFNALIRGL 154
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
+ + +A+F + M + IKP++ T+ FVLK+ L +G +H I++ G E +
Sbjct: 155 TTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDS 214
Query: 141 FVRNSLIYFHANCGDLNTASVLFDG-----DAKMDVVAWSSLTAGYARRGELSMARSLFD 195
FVR SL+ + L +A +FD D+ + W+ L G + G + A LF
Sbjct: 215 FVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFK 274
Query: 196 EMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
MP ++ VSW+ +I G+AK G+M++A ELF+++P+++VVSW M+ G+ G +++AL M
Sbjct: 275 AMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSM 334
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
F +M G RP+ T++S L+ACA +G LE G ++H + D + + L G AL+DMYA
Sbjct: 335 FSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEAL-GTALVDMYA 393
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
KCG+IE A EVF + + TW+ +I G A HG +E++IA F++M ++P E+ F+
Sbjct: 394 KCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLA 453
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------------------ 411
+L AC H+G+V+ G +F MR +Y IEP+++HY +
Sbjct: 454 LLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMN 513
Query: 412 ---------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
H ++ + A +LL + +G+Y+ LSN YA+ G+W E+VR
Sbjct: 514 PDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVR 573
Query: 457 KLMDDSDIKKQPGCSLIEADDK 478
LM + + K G S IE + +
Sbjct: 574 VLMQNRGVHKNSGWSCIEVEGQ 595
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/509 (33%), Positives = 259/509 (50%), Gaps = 71/509 (13%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
N ++ L ++C+N++ L QI + G + + L+ S + + + Y +F
Sbjct: 9 NTEQTQALLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFD 68
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
I+ P+T ++NT++R + S +P A+ LY QM S+ N +TF F+LKAC+ L
Sbjct: 69 SISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEE 128
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
+H I+K GF + NSL+ YA
Sbjct: 129 TQQIHAHIIKRGFGLEVYATNSLLRV-------------------------------YAI 157
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G + A LF+++P RD+VSWN+MI GY K G ++ A ++F +P+++V+SW MI G+
Sbjct: 158 SGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGF 217
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
V GM+K+AL + ++M G +PD +T+ L+ACA LG LE GK +H + +
Sbjct: 218 VRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDP 277
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
VL G L DMY KCG +E+A+ VF + + V W+ +IGGLA HG E++ F +MQ+
Sbjct: 278 VL-GCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQK 336
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
+ P ITF +L ACSHAG EEGK F+ M YNI+P++ HYG
Sbjct: 337 AGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLK 396
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
+H ELG+ K L+ + D SG Y+ L++IYA
Sbjct: 397 EAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIELDPDHSGRYIHLASIYA 456
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ GEWN+V +VR + + PGCS I
Sbjct: 457 AAGEWNQVVRVRSQIKHRGLLNHPGCSSI 485
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 185/601 (30%), Positives = 293/601 (48%), Gaps = 111/601 (18%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H L + C ++ L+Q+ G N++ ++ G YA ++F +I
Sbjct: 19 HPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEI 78
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
EP+ F++NT+IRG ++ P V LY +M + +KP+++TF F+ K TR + G
Sbjct: 79 PEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGR 138
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG ++K+G ++N FV +L+ + CG L+TA +FD K DV+ W+ + + Y + G
Sbjct: 139 QLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVG 198
Query: 186 ELSMARSLFDEMPVR---------------------------------------DLVSWN 206
+ +R LF M + +LV N
Sbjct: 199 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLEN 258
Query: 207 VMITGYAKQGEMEK-------------------------------ANELFNEVPKRDVVS 235
MI YA GEM+ A F+++P++D VS
Sbjct: 259 AMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVS 318
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
W AMI GY+ K+ALE+F M++ +PD+ TM+S+LTACA LG LE+G+ + T +
Sbjct: 319 WTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIR-TYI 377
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
D + NALIDMY KCG +++A +F M RD TW+ +I GLA +G E+++
Sbjct: 378 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 437
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
MF M + + P EIT++GVL AC+H G V++G+KYF M ++ IEPNI HYG
Sbjct: 438 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 497
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
V+ + ++ + K++L + D Y
Sbjct: 498 LARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVY 557
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
VLL NIYA+ WN + ++R++M D IKK PGCSLIE + + +++ + P + N+
Sbjct: 558 VLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVH-EFVAGDRSHPQTKNI 616
Query: 497 D 497
D
Sbjct: 617 D 617
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 173/513 (33%), Positives = 269/513 (52%), Gaps = 77/513 (15%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
RH SS C L+ L QI A G SD+ ++ ++ G+I YA +F +
Sbjct: 40 RHLSS-----CKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYR 94
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNM 123
I +PD F+ NT+IR A S NP+DAV Y++M + S+ P+ TF +LKAC+ + +
Sbjct: 95 IRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRL 154
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G +H + K G+ V N L+ +A+CG + +A ++FD + D +W+ + GY +
Sbjct: 155 GEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLK 214
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G AR +F+ MP RD+VSW+VMI GY ++
Sbjct: 215 CGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRF------------------------- 249
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
K+ L +F++M P++ +++ L+ACA LG +E G+ + ++ +
Sbjct: 250 ------KEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIE-RYMERKNVRLT 302
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
V G ALIDMY+KCGS+ERA+EVF M++++V WS +I GLA +G ++++ +F +M+
Sbjct: 303 VRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEM 362
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH-------YG------ 410
V+P E+TF+G+L ACSH+ V+EG +F M Y ++PN H YG
Sbjct: 363 QGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLD 422
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
+HGD ELG KRLL + + G YVLLSNIYA
Sbjct: 423 QAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYA 482
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+ G W+RV ++R++M + + K PGCS I+ D
Sbjct: 483 ACGRWDRVAELRRMMRERQVSKTPGCSFIDLGD 515
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 181/510 (35%), Positives = 282/510 (55%), Gaps = 82/510 (16%)
Query: 15 CTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
C NL+ +I + + + GF SD+ +A R L +S G ++Y+ ++F +I + FM+
Sbjct: 39 CHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIG-LDYSLQIFDRIENSNGFMW 97
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
NT++R QS + A+ LY M K ++ P+ +T+ V++AC L G +H ++K
Sbjct: 98 NTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLK 157
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM---A 190
GF+ + +V+N+LI +A CG++ A LFD +D V+W+S+ AGY ++G++ A
Sbjct: 158 VGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEA 217
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
LF+EM +D+VSW+ +I+GY + GM +
Sbjct: 218 WKLFNEMDEKDMVSWSALISGYEQN-------------------------------GMYE 246
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNA 309
+AL MF EM + G R D+V ++S+L+ACA L ++ GK +H ++ M G+ ++ NA
Sbjct: 247 EALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRM--GIESYVNLQNA 304
Query: 310 LI----DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
LI DMY KCG +E A+EVF GM ++ VS+W+ LI GLA +G E S+ MF EM+
Sbjct: 305 LIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNG 364
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------- 411
V P EITF+GVL AC H G V+EG+ +F M +++ IEPN++HYG
Sbjct: 365 VIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEA 424
Query: 412 -------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
HGD E+G ++L+ ++ D G +VLLSNI+AS+
Sbjct: 425 EKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASK 484
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G+W V +VR +M + K PGCSLIEA+
Sbjct: 485 GDWEDVLEVRGMMKQQGVVKTPGCSLIEAN 514
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 136/300 (45%), Gaps = 19/300 (6%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
++ C N+R +++ + S +S L + G + G + A K+F ++ E D
Sbjct: 173 MYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDM---GQVMEAWKLFNEMDEKDM 229
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++ +I G Q+ +A+ ++ +M ++ ++ VL AC L G +HG
Sbjct: 230 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGL 289
Query: 131 IVKYGFEFNRFVRNSLIYFHAN----CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+++ G E ++N+LI+ +++ CG + A +F+G + V +W++L G A G
Sbjct: 290 VIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGL 349
Query: 187 LSMARSLFDEMPVRDLVSWNVMITG---------YAKQGEMEKANELFNEVPKRDVVSWN 237
+ + +F EM ++ + G +G A+ + + +V +
Sbjct: 350 VERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYG 409
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
M+ G+ +A ++ E M PD T +LL AC GD E+G++V L+++
Sbjct: 410 CMVDLLGRAGLLNEAEKLIESMPMA---PDVATWGALLGACKKHGDTEMGERVGRKLIEL 466
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 178/525 (33%), Positives = 277/525 (52%), Gaps = 73/525 (13%)
Query: 23 QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQ 82
QI A + SD+ A L+ S V +NYA +F +I +P++F+ NT+++ +
Sbjct: 29 QIHAQLITTNLISDTFAASRLLDS-VVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTE 87
Query: 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFV 142
S P A+ Y +M K + + +T+ FVLKAC + G V G+ VK GF + FV
Sbjct: 88 SSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFV 147
Query: 143 RNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA-------------------- 182
N LI + CG+ A +FDG ++ D+V+W+S+ GY
Sbjct: 148 VNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDV 207
Query: 183 ------------RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
+ GE++ AR FD MP RDLVSWN MI GYAK GEME A E+FB++ +
Sbjct: 208 VSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQ 267
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
++V+SW+ MI GY +K+AL +F +M G +PD V+++ ++AC+ LG L+ G+ +
Sbjct: 268 KNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWI 327
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
H + + ++ AL+DMY KCGS + A +F M +R+V +W+ +I GL +GF
Sbjct: 328 H-LYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGF 386
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
+E++ F +M+ ++ ++ F+GVL+ACSHA V EG F M+ Y +EP + HYG
Sbjct: 387 GKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYG 446
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
+H +V L + +RL ++ D
Sbjct: 447 CLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKAD 506
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+SG YVL+SNIYA G W + ++RKLM + +KK G S+IE D
Sbjct: 507 DSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVD 551
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 188/561 (33%), Positives = 273/561 (48%), Gaps = 97/561 (17%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ + G D A LI ++ ++Y + P+TF +N IRG S+NP
Sbjct: 1 MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 60
Query: 88 DAVFLYTQMEKC-SIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL 146
+AV LY ++ +C KP+ +T+ + KAC RL MG + G ++ GF+ + FV N++
Sbjct: 61 EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 120
Query: 147 IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWN 206
I+ +CGDL+ A +FD D+V+W+S+ GY RRG A + + EM V +
Sbjct: 121 IHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDE 180
Query: 207 VMITG---------------------------------------YAKQGEMEKANE---- 223
V + G Y K G +E A +
Sbjct: 181 VTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDS 240
Query: 224 ------------LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
LF+E+P +DVV WNAMI GYV K+AL +F EM+++ PD+VTM
Sbjct: 241 MTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 300
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
+S L+AC+ LG L+VG +H ++ V G ALIDMYAKCG I +AI+VF +
Sbjct: 301 VSCLSACSQLGALDVGIWIH-HYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELP 359
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
R+ TW+ +I GLA HG A +IA F EM V P E+TF+G+L AC H G VEEG+K
Sbjct: 360 GRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRK 419
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
YF M ++N+ P ++HY +H
Sbjct: 420 YFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIH 479
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
G+V +G A +LL M +SG YVLL+N+Y W K RKLM ++K PGCS
Sbjct: 480 GNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSS 539
Query: 473 IEADDKAFLQYLFNLKPKPNS 493
IE + + +++ K P S
Sbjct: 540 IEVNGIVY-EFIVRDKSHPQS 559
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 184/588 (31%), Positives = 300/588 (51%), Gaps = 119/588 (20%)
Query: 2 RTNRHRS-SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
++ H++ L +C++++ LK + A + ++G + L +L+ V G + YAH
Sbjct: 35 KSPTHQTLHHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLL--SLCVQEGDLRYAHL 92
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM----------------EKCSIKP- 103
+F +I +P+ FMYN +IRG + S +P+ ++ L+ QM + C+ KP
Sbjct: 93 LFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPF 152
Query: 104 -----------------------NKFTFSFVLKACTRLL--------------------- 119
N ++V AC +L
Sbjct: 153 YWEAVIVHAQAIKLGMGPHACVQNAILTAYV--ACRLILSARQVFDDISDRTIVSWNSMI 210
Query: 120 --YRNMGFC-----VHGKIVKYGFEFNRFVRNSLI-----YFHANCGDLNTASVLFDGDA 167
Y MGFC + ++++ G E + F SL+ + + + G ++ G
Sbjct: 211 AGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITG-V 269
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
++D + ++L YA+ G L A+ +FD+M +D+VSW M+ YA QG +E A ++FN
Sbjct: 270 EIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNH 329
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P ++VVSWN++I V G +A+E+F M G PDD T++S+L+ C++ GDL +G
Sbjct: 330 MPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALG 389
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
K+ HC + D V+ L N+LIDMYAKCG+++ AI++F GM +++V +W+ +IG LA
Sbjct: 390 KQAHCYICDNIITVSVTL-CNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALAL 448
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
HGF EE+I MF+ MQ + P EITF G+L ACSH+G V+ G+ YF +M + I P +
Sbjct: 449 HGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVE 508
Query: 408 HYG---------------------------------------VHGDVELGRLANKRLLNM 428
HY ++G++E+ + K+LL +
Sbjct: 509 HYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLEL 568
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ SG YVLLSN+Y+ W+ ++K+RK+MDDS IKK S IE D
Sbjct: 569 GRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEID 616
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 189/583 (32%), Positives = 286/583 (49%), Gaps = 113/583 (19%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP--GAINYAHKMFV 63
H S L C L++L+ I A + G ++ + AL +L+ V+ P + YA +F
Sbjct: 3 HPSLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLL-EXCVLSPHFDGLPYAISVFD 61
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
I EP ++NT+ RG A S +P+ A+ LY M + PN +TF F+LK+C +
Sbjct: 62 TIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKE 121
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFH-------------------------------AN 152
G +HG+++K+GF+ + ++ SLI + A+
Sbjct: 122 GQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYAS 181
Query: 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV------------- 199
G + +A +FD DVV+W++ +GYA G A LF +M
Sbjct: 182 RGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTV 241
Query: 200 -------------RDLVSW-------------NVMITGYAKQGEMEKANELFNEVPKRDV 233
R + SW N +I Y+K GE+E A LF + +DV
Sbjct: 242 LSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDV 301
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
+SWN +I GY + K+AL +F++M GE+P+DVTMLS+L+ACA LG +++G+ +H
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVY 361
Query: 294 LLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ GV +LIDMYAKCG IE A +VF M +R +S+W+ +I G A HG A
Sbjct: 362 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRAN 421
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+ +F M++ + P +ITFVG+L ACSH+G ++ G+ F+ M +Y + P + HYG
Sbjct: 422 AAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCM 481
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG+VELG + L+ + +
Sbjct: 482 IDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENP 541
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YVLLSNIYA+ WN V K R L++D +KK PGCS IE D
Sbjct: 542 GSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEID 584
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 191/564 (33%), Positives = 290/564 (51%), Gaps = 92/564 (16%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV--IPGAINYAHKMFVKITEPDTF 71
KCTNL ++ QI A V + D +LI + S+ + A+N +F + P+
Sbjct: 30 KCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVN----VFNHVPHPNVH 85
Query: 72 MYNTIIRGSAQSQN----PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
+YN+IIR A + + P +A F QM+K + P+ FT+ F+LKAC+ + +
Sbjct: 86 LYNSIIRAHAHNSSHRSLPFNAFF---QMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMI 142
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCG--------------------------------- 154
H + K GF + FV NSLI ++ CG
Sbjct: 143 HAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCG 202
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK 214
+L A LFD D+V+W+++ GYA+ GE+ A LF+ MP R++VSW+ M+ GY+K
Sbjct: 203 ELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSK 262
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
G+M+ A LF+ P ++VV W +I+GY G+ ++A E++ +M G RPDD +LS+
Sbjct: 263 GGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSI 322
Query: 275 LTACADLGDLEVGKKVHCTL--LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG-MR 331
L ACA+ G L +GK++H ++ G AKVL NA IDMYAKCG ++ A +VF G M
Sbjct: 323 LAACAESGMLGLGKRIHASMRRWRFRCG-AKVL--NAFIDMYAKCGCLDAAFDVFSGMMA 379
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+DV +W+++I G A HG E+++ +F M + P TFVG+L AC+HAG V EG+K
Sbjct: 380 KKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRK 439
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
YF M Y I P + HYG +H
Sbjct: 440 YFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMH 499
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
DV+L R ++L + + G+Y LLSNIYA G+W V VR M ++ +K G S
Sbjct: 500 NDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASS 559
Query: 473 IEADDKAFLQYLFNLKPKPNSGNL 496
IE +++ +F+ + P S ++
Sbjct: 560 IEVEEEVHEFTVFD-QSHPKSDDI 582
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 177/501 (35%), Positives = 269/501 (53%), Gaps = 46/501 (9%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
L+QI + S S + + I S S + +++YA +F + +++++N +IRG
Sbjct: 58 LRQIHGQLYRCNVFSSSRVVTQFISSCSSL--NSVDYAISIFQRFELKNSYLFNALIRGL 115
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
A++ ++ + M K I P++ TF FVLK+ L +G +H I+K+G EF+
Sbjct: 116 AENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDS 175
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKM----DVVAWSSLTAGYARRGELSMARSLFDE 196
FVR SL+ + +L +A +FD + V+ W+ L GY R G+L A LFD
Sbjct: 176 FVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDS 235
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP +D SWN +I G+ K G+M +A ELF ++P+++VVSW M++G+ G ++ALE F
Sbjct: 236 MPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETF 295
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
M G RP+D T++S L+ACA +G L+ G ++H L + V+ G AL+DMYAK
Sbjct: 296 FCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVI-GTALVDMYAK 354
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CG+IE A +VF +++ + WS +I G A HG +++ F M+ +P + F+ V
Sbjct: 355 CGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAV 414
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------------------- 411
L ACSH+G+V EG K+F MR Y IEP+++HY +
Sbjct: 415 LNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITP 474
Query: 412 --------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
H +VE+ LA+K+LL + G YV LSN YAS G W+ E+VR
Sbjct: 475 DFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRV 534
Query: 458 LMDDSDIKKQPGCSLIEADDK 478
M D K PG S IE D K
Sbjct: 535 SMRDHGAHKDPGWSFIEVDHK 555
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 179/513 (34%), Positives = 279/513 (54%), Gaps = 77/513 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C ++ LKQI + +NGF+ + L +L+ + G + AHK+F +I P T
Sbjct: 24 LLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLL--SFYITSGNLLNAHKVFERIENPST 81
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++N +IRG +QS+ P V LY +M + +PN+FT+SF++ C R G VHG+
Sbjct: 82 TVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGR 141
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+V G+ N FVR SL+ +A G +DG K A
Sbjct: 142 VVANGYCTNVFVRTSLVNLYAIAGG-------YDGVRK---------------------A 173
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +FDE+ R++VSWN ++ GY + G+++ A +F+E+P+R+VVSW MI+G G K
Sbjct: 174 RRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCK 233
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD-MTSGVAKVLHG-- 307
QAL +F EMR G + D V +++ L+ACA+LGDL++G +H + + + +G +L
Sbjct: 234 QALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLN 293
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV- 366
N+LI MYA CG I++A +VF+GM+ R +W+++I G A G AEE++ +F+ MQRL
Sbjct: 294 NSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTD 353
Query: 367 --RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------- 410
RP ITF+GVL ACSHAG V++G+ +F+ M ++ I P I HYG
Sbjct: 354 EGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDE 413
Query: 411 -------------------------VHGDVELG-RLANKRLLNMRKDESGDY-VLLSNIY 443
+H + EL +A K L ++ D++ Y VLLSN+Y
Sbjct: 414 AHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVY 473
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
A+ W V VR+ M + ++K G S ++ +
Sbjct: 474 ATAKRWQDVALVRQKMVEIGVRKPAGRSWVQIN 506
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 184/588 (31%), Positives = 291/588 (49%), Gaps = 114/588 (19%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
++N L KC N + LKQ+ A + G D + +L + ++ P +++YA K
Sbjct: 26 QKSNPSTVPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACK 85
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLL 119
+F +I P+ + +NT+IR A S P+ + ++ QM S + PN +TF FV+KA T +
Sbjct: 86 VFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVS 145
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
G +HG ++K F + F+ NSLI+F+++ GDL++A ++F + D+V+W+S+ +
Sbjct: 146 SLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMIS 205
Query: 180 GYARRGELSMARSLFDEM------PVR--------------------------------- 200
G+ + G A LF M P R
Sbjct: 206 GFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDI 265
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNE-------------------------------VP 229
+L+ N M+ Y K G +E A LF++ +P
Sbjct: 266 NLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMP 325
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDDVTMLSLLTACADLGDLEVGK 288
+ D+ +WNA+IS Y G K+AL +F E++ + +P++VT+ S L ACA LG +++G
Sbjct: 326 REDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGG 385
Query: 289 KVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
+H + G+ H +LIDMY+KCG +E+A+EVF + RDV WS +I GLA
Sbjct: 386 WIHVYI--KKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAM 443
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
HG +I +F +MQ KV+P +TF +L ACSH+G V+EG+ +F MR Y + P +
Sbjct: 444 HGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSK 503
Query: 408 HYG---------------------------------------VHGDVELGRLANKRLLNM 428
HY ++G+VEL +A RLL
Sbjct: 504 HYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLET 563
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ G YVLLSNIYA G+W+ V ++R+ M S ++K+PGCS IE +
Sbjct: 564 DSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVN 611
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 187/575 (32%), Positives = 285/575 (49%), Gaps = 110/575 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L K C ++ LKQI + G S+ ++I G + YA +F + P+
Sbjct: 25 LIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNH 84
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F++N +I+G ++ P AV +Y +M + + P+++T+ F+LK TR G +H
Sbjct: 85 FVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDH 144
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
IVK GF N FV+N+LI+ ++ G+++ A +FD +K DVV W+ + +GY R + +
Sbjct: 145 IVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDES 204
Query: 191 RSLFDEMP---------------------------------VRDL------VSWNVMITG 211
LFDEM V+DL V N +I
Sbjct: 205 MKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDM 264
Query: 212 YAKQGEMEK-------------------------------ANELFNEVPKRDVVSWNAMI 240
YA G+M+ A F+++P+RD VSW AMI
Sbjct: 265 YAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMI 324
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
GY+ K+ L +F EM++ +PD+ TM+S+LTACA LG LE+G+ + +D
Sbjct: 325 DGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIK-AYIDKNEI 383
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
GNALIDMY CG++E+AI +F M RD +W+ +I GLA +G+ EE++ MF +
Sbjct: 384 KIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQ 443
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M + + P E+T +GVL AC+H+G V++GKK+F M ++ IEPN+ HYG
Sbjct: 444 MLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAG 503
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
VH D E+ +A +++L + + YVLL N
Sbjct: 504 HLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCN 563
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
IYA+ W ++ +VRKLM D IKK PGCSLIE +
Sbjct: 564 IYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMN 598
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 176/473 (37%), Positives = 256/473 (54%), Gaps = 78/473 (16%)
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F EP+ F ++ II QS+ A Y+QM C ++PN FTFS VLK+C+
Sbjct: 101 VFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSL--- 157
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
G +H + +K G + +VR L+ DV
Sbjct: 158 -ESGKVLHCQAIKLGLGSDLYVRTGLV----------------------DV--------- 185
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YAR G++ AR LFD+MP R LVS M+T Y+K GE++KA LF + +RDVV WN MI
Sbjct: 186 YARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMI 245
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
GY G+ ++L++F M P++VT+L++L+AC LG LE G+ +H + + G
Sbjct: 246 GGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIEN--KG 303
Query: 301 VAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ +H G ALIDMY+KCGS+E A VF +RD+DV W+++I G A HGF++ ++ +F
Sbjct: 304 IQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFE 363
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
EM +PT+ITF+G+L AC H G VEEG+ +F+LMRD+Y IEP I HYG
Sbjct: 364 EMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRA 423
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
+H +++LG K L++ + SG YVLLS
Sbjct: 424 GHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLS 483
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
N+YA+ G W V K+R LM + I+K+ GCS IE D+K +++ + P S
Sbjct: 484 NMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVH-EFVAGERKHPKS 535
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 34/209 (16%)
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
YA G ++ + +FN + +V S++A+I +V + +A + +M S G P+ T
Sbjct: 89 YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148
Query: 272 LSLLTACADLGDLEVGKKVHCT---------------LLDMTSGVAKVLHGNALID---- 312
S+L +C+ LE GK +HC L+D+ + V+ L D
Sbjct: 149 SSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPE 204
Query: 313 -----------MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
Y+K G +++A +F GM++RDV W+ +IGG A G ES+ +FR M
Sbjct: 205 RSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRM 264
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGK 390
K P E+T + VL AC G +E G+
Sbjct: 265 LVAKAIPNEVTVLAVLSACGQLGALESGR 293
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 130/293 (44%), Gaps = 16/293 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F + E D +N +I G AQS P +++ L+ +M PN+ T VL
Sbjct: 221 GELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVL 280
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC +L G +H I G + N V +LI ++ CG L A ++FD DVV
Sbjct: 281 SACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVV 340
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELFNEV 228
AW+S+ GYA G A LF+EM ++ G G +E+ F +
Sbjct: 341 AWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLM 400
Query: 229 PKRDVVSWNAMISGYV----LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
RD I Y L G E + ++++ D V +LL C ++
Sbjct: 401 --RDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNI 458
Query: 285 EVGKKVHCTLLD--MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
++G+++ L+D + + VL L +MYA G+ E ++ M++ +
Sbjct: 459 KLGEEIAKFLVDQKLANSGTYVL----LSNMYAATGNWEGVAKMRTLMKEHGI 507
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 175/530 (33%), Positives = 271/530 (51%), Gaps = 72/530 (13%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKM 61
+ N ++ L ++C+N+ LKQI + G + L+ + + + + YA +
Sbjct: 8 QLNVEQTMSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMV 67
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
F +I+ P+T M+NT+IR + S +P +A+ LY QM SI N +TF F+LKAC+ L
Sbjct: 68 FDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSAL 127
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
+H +I+K GF + NSL+ Y
Sbjct: 128 AETHQIHVQIIKRGFGSEVYATNSLLRV-------------------------------Y 156
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
A G + A LFD +P RD+VSWN MI GY K G +E A ++F +P+++V+SW +MI
Sbjct: 157 AISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIV 216
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
G+V GM+K+AL + ++M G +PD +T+ L+ACA LG LE GK +H + +
Sbjct: 217 GFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKI 276
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
VL G ALIDMY KCG +++A+ VF + + V TW+ +IGG A HG E++ F +M
Sbjct: 277 DPVL-GCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQM 335
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
Q+ ++PT TF VL ACSH G VEEGK F+ M YN++P + HYG
Sbjct: 336 QKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGF 395
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+H +ELG+ K L+ + + G Y+ L++I
Sbjct: 396 LKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDGRYIHLASI 455
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPN 492
+A+ GEW+ +VR + + + PGCS I + A ++ +P P+
Sbjct: 456 HAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLNGVAH-EFFAGAEPHPH 504
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 180/533 (33%), Positives = 276/533 (51%), Gaps = 74/533 (13%)
Query: 13 KKCTNLRTLKQIQAL-VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
+ C R Q+ AL + N S + R L I + YAH +F I EP
Sbjct: 23 QNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRI-NNLQYAHSLFDWIQEPTLV 81
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+N +I+ ++Q DA+ L+ ++ C P+ FT VLK C RL G +HG +
Sbjct: 82 SWNLLIKCYIENQRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLV 140
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA- 190
+K GF ++FV +SL+ ++ CG++ +FD DVV+W+SL GYAR GE+ +A
Sbjct: 141 LKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELAL 200
Query: 191 ------------------------------RSLFDEMPVRDLVSWNVMITGYAKQGEMEK 220
R +FD MP+R+ VSWN MI GY K G+
Sbjct: 201 EMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNT 260
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A ELF+++P+R +V+WN+MI+GY +AL++FE M P+ T+L ++A +
Sbjct: 261 AKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASG 320
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
+ L G+ VH ++ VL G LI+MY+KCGS++ A+ VF + + + W++
Sbjct: 321 MVSLGTGRWVHSYIVKSGFKTDGVL-GTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTS 379
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
+I GL HG E+++ +F EM R ++P ITF+GVL ACSHAG E+ +YFK+M +Y
Sbjct: 380 VIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDY 439
Query: 401 NIEPNIRHYGV---------------------------------------HGDVELGRLA 421
I+P+I HYG HG++ +G A
Sbjct: 440 GIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYA 499
Query: 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ L+++ D +G YV+LSN+YA+ G W +V +VR++M +KK PGCS IE
Sbjct: 500 AQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIE 552
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 183/544 (33%), Positives = 282/544 (51%), Gaps = 87/544 (15%)
Query: 12 WKKCTNLRTLKQIQALVTINGFNSD----SSALRELIYSGSVVIPGAINYAHKMFVKITE 67
WK NL L Q+ + + ++G + +SA+++L S SV P A +F +
Sbjct: 17 WK---NLHELNQVLSQLIVSGLSQHPLFATSAIKKLC-SHSVTFPRATF----LFDHLHH 68
Query: 68 PDTFMYNTIIRGSAQSQN-PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
PD F NTIIR A+ + P F Y +M S+ PN +TF ++K CT + G
Sbjct: 69 PDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLK 128
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
H +IVK+GF + F RNSLI ++ G + A ++FD +D+V+++S+ GY + GE
Sbjct: 129 GHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGE 188
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ AR +F+EMP RD++SWN +I GY G+++ ANELF +P+RD VSWN MI G
Sbjct: 189 IGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARV 248
Query: 247 GMNKQALEMFEEM--------------------RSVGE--------------RPDDVTML 272
G A++ F+ M ++ GE P++ T++
Sbjct: 249 GNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLV 308
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
S+LTACA+LG L +G VH + + + VL L+ MYAKCG+++ A VF M
Sbjct: 309 SVLTACANLGKLSMGMWVH-SFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPV 367
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
R V +W+++I G HG ++++ +F EM++ +P + TF+ VL AC+HAG V EG Y
Sbjct: 368 RSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWY 427
Query: 393 FKLMRDEYNIEPNIRHYGV---------------------------------------HG 413
F LM+ Y IEP + HYG H
Sbjct: 428 FDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHL 487
Query: 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
D ELG + KR + + + G Y+LLSN+YA++G W+ VE VR ++ + ++K+ SL+
Sbjct: 488 DSELGEIVAKRFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSLV 547
Query: 474 EADD 477
+D
Sbjct: 548 HLED 551
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 178/507 (35%), Positives = 277/507 (54%), Gaps = 77/507 (15%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C ++ LKQI + +NGF+ + L +L+ + G + AHK+F +I P T ++N
Sbjct: 44 CDTIKKLKQIHTQIIVNGFSQKNFLLVKLL--SFYITSGNLLNAHKVFERIENPSTTVWN 101
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
+IRG +QS+ P V LY +M + +PN+FT+SF++ C R G VHG++V
Sbjct: 102 QMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVAN 161
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
G+ N FVR SL+ +A G +DG K AR +F
Sbjct: 162 GYCTNVFVRTSLVNLYAIAGG-------YDGVRK---------------------ARRVF 193
Query: 195 DEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
DE+ R++VSWN ++ GY + G+++ A +F+E+P+R+VVSW MI+G G KQAL
Sbjct: 194 DEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALH 253
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD-MTSGVAKVLHG--NALI 311
+F EMR G + D V +++ L+ACA+LGDL++G +H + + + +G +L N+LI
Sbjct: 254 LFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLI 313
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV---RP 368
MYA CG I++A +VF+GM+ R +W+++I G A G AEE++ +F+ MQRL RP
Sbjct: 314 HMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRP 373
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
ITF+GVL ACSHAG V++G+ +F+ M ++ I P I HYG
Sbjct: 374 DGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRL 433
Query: 411 ---------------------VHGDVELG-RLANKRLLNMRKDESGDY-VLLSNIYASRG 447
+H + EL +A K +L ++ D++ Y VLLSN+YA+
Sbjct: 434 XESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLVLELKPDQAAGYLVLLSNVYATAK 493
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIE 474
W V VR+ M + ++K G S ++
Sbjct: 494 RWQDVALVRQKMVEIGVRKPAGRSWVQ 520
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 179/537 (33%), Positives = 281/537 (52%), Gaps = 73/537 (13%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +K + QI A + SD+ A L+ S V +NYA +F +I +P++
Sbjct: 17 LLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDS-VVSKTLNVNYAELVFAQIHQPNS 75
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F+ NT+++ +S P A+ Y +M + + + +T+ FVLKAC + G V G+
Sbjct: 76 FICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGE 135
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA-------- 182
VK GF + FV N LI + CG+ A +FDG ++ D+V+W+S+ GY
Sbjct: 136 AVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENA 195
Query: 183 ------------------------RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEM 218
+ GE++ AR FD MP RDLVSWN MI GYAK GEM
Sbjct: 196 QNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEM 255
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
E A E+F+++ +++V+SW+ MI GY +K+AL +F +M G +PD V+++ ++AC
Sbjct: 256 EVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSAC 315
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
+ LG L+ G+ +H + + ++ AL+DMY KCGS + A +F M +R+V +W
Sbjct: 316 SQLGALDQGRWIH-LYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSW 374
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+ +I GL +GF +E++ F +M+ ++ ++ F+GVL+ACSHA V EG F M+
Sbjct: 375 NVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKG 434
Query: 399 EYNIEPNIRHYG---------------------------------------VHGDVELGR 419
Y +EP + HYG +H +V L
Sbjct: 435 VYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAE 494
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ +RL ++ D+SG YVL+SNIYA G W + ++RKLM + +KK G S+IE D
Sbjct: 495 IVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVD 551
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 172/473 (36%), Positives = 256/473 (54%), Gaps = 80/473 (16%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM---------EKCSIKPNK 105
++YA +F ++ +P+ ++YN +IR + + Y QM + I P++
Sbjct: 36 MDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDE 95
Query: 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165
FTF FV+KAC RL N+G VH + K+G + + N+LI + C +L
Sbjct: 96 FTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNL--------- 146
Query: 166 DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF 225
+D A +LFDEM R +SWN +I+G+ + G+M +A LF
Sbjct: 147 ---LD-------------------AHNLFDEMHERGAISWNGIISGHVRLGQMRRARALF 184
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+E+P R +VSW A+ISGY G AL++F EM+ G PD+ +++S+L ACA LG LE
Sbjct: 185 DEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALE 244
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
GK +H + + NALI+MY KCG I++A ++F MR RDV +WST+IGGL
Sbjct: 245 TGKWIH-MFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGL 303
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
A HG E+IA+F M++ ++P ITFVG+L AC+HAG EEG YF M+ +++IEP
Sbjct: 304 ANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPE 363
Query: 406 IRHYG---------------------------------------VHGDVELGRLANKRLL 426
I HYG H ++E+ +A + L
Sbjct: 364 IEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLE 423
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
+ D++G+YVLLSNIYA G+W+ V ++RKL+ +KK PGCSLIE ++ A
Sbjct: 424 ELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVA 476
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 41/223 (18%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM------RS 261
MI + +M+ A+ LF EV + +NAMI M ++ +++M
Sbjct: 26 MIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQ 85
Query: 262 VGER---PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC- 317
E PD+ T ++ ACA LG +GK+VH + ++ NALIDMY KC
Sbjct: 86 TSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKK-SHLITENALIDMYTKCD 144
Query: 318 ------------------------------GSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
G + RA +F M +R + +W+ +I G
Sbjct: 145 NLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTR 204
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
G +++ +FREMQ + P E + + VL AC+ G +E GK
Sbjct: 205 IGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGK 247
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 121/253 (47%), Gaps = 13/253 (5%)
Query: 44 IYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP 103
I SG V + G + A +F ++ + II G + + +DA+ ++ +M+ I+P
Sbjct: 167 IISGHVRL-GQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEP 225
Query: 104 NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF 163
++ + VL AC +L G +H + G + N+LI + CG ++ A LF
Sbjct: 226 DEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLF 285
Query: 164 DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEME 219
D DV++WS++ G A G++ A ++F+ M ++ +++ +++ A G E
Sbjct: 286 DQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWE 345
Query: 220 KANELFNEVPK-----RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
+ F+ + K ++ + +++ G QAL++ E+M +PD SL
Sbjct: 346 EGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPM---KPDSKIWGSL 402
Query: 275 LTACADLGDLEVG 287
L++C ++EV
Sbjct: 403 LSSCRTHCNIEVA 415
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 174/497 (35%), Positives = 275/497 (55%), Gaps = 76/497 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
K+I A + I+G + S + +++ + ++YA ++F +++ P+ F+YN+IIR
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDKI--EDMDYATRLFNQVSNPNVFLYNSIIRAYT 84
Query: 82 QSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
+ D + +Y Q+ + S + P++FTF F+ K+C L +G VHG + K+G F+
Sbjct: 85 HNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHV 144
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
N+LI D+ Y + +L A +FDEM R
Sbjct: 145 VTENALI-------DM------------------------YMKFDDLVDAHKVFDEMYER 173
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D++SWN +++GYA+ G+M+KA LF+ + + +VSW AMISGY G +A++ F EM+
Sbjct: 174 DVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQ 233
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGS 319
G PD+++++S+L +CA LG LE+GK +H L G K NALI+MY+KCG
Sbjct: 234 LAGIEPDEISLISVLPSCAQLGSLELGKWIH--LYAERRGFLKQTGVCNALIEMYSKCGV 291
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I +AI++F M +DV +WST+I G A+HG A +I F EMQR KV+P ITF+G+L A
Sbjct: 292 ISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSA 351
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSH G +EG +YF +MR +Y IEP I HYG
Sbjct: 352 CSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSK 411
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
G++++ +A L+ + ++ G+YVLL+NIYA G+W V ++RK++
Sbjct: 412 IWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIR 471
Query: 461 DSDIKKQPGCSLIEADD 477
+ ++KK PG SLIE ++
Sbjct: 472 NENMKKTPGGSLIEVNN 488
>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 182/575 (31%), Positives = 289/575 (50%), Gaps = 111/575 (19%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSAL-RELIYSGSVVIPGAINYAHKMFVKITE 67
S+L +++ KQ+ AL+ I+G + L R+++ S S Y H +
Sbjct: 8 SKLSTISLSVKQAKQVHALILIHGLSHLEPILARQILISASNYSATVAQYVHSVLHHSKS 67
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
PD+F + IR S Q +A LY QM++ + P F S LKAC R+ YR G +
Sbjct: 68 PDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISI 127
Query: 128 HGKIVKYGFEFNR---FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
HG++ K+GF +V +L+ F+ GD+ A +FD A+ +VV+W+S+ AGY +
Sbjct: 128 HGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKS 187
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG-- 242
G+L +A+ +FDE+P +D++SWN MI+GYA+ G+MEKA+ LF ++P+R+ SWNAMISG
Sbjct: 188 GDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHV 247
Query: 243 -----------------------------YVLCGMNKQALEMFEEMRS------------ 261
Y CG A E+F+++
Sbjct: 248 EFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIAC 307
Query: 262 ---------------------VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
V +PD++T+ S+++AC+ LGDL G + + + G
Sbjct: 308 YAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRL--G 365
Query: 301 VAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ H AL+D+YAKCGSI++A E+F G+R +D+ ++ +I G +G A ++I +F
Sbjct: 366 IEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFD 425
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------- 411
EM ++ P ITF+G+L A +HAG VEEG + F M+ +YN+ P++ HYG+
Sbjct: 426 EMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMK-KYNLVPSVDHYGIMVDLFGRA 484
Query: 412 -------------------------------HGDVELGRLANKRLLNMRKDESGDYVLLS 440
H +VE G +A + + D +G LLS
Sbjct: 485 GRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLS 544
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
NIYAS W+ V+++RK+ + K PGCS +E+
Sbjct: 545 NIYASGERWDDVKRLRKVTKEKGFSKIPGCSWMES 579
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 173/488 (35%), Positives = 258/488 (52%), Gaps = 85/488 (17%)
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP--------NKFTFSFVL 112
+F +I P+ ++N +I+ AQ+ DAV +Y +M +C P ++FT+ F+L
Sbjct: 64 VFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLL 123
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC L +G VH + + G E + V+NSLI + CGD
Sbjct: 124 KACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGD----------------- 166
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
LS AR FD M +D+VSWN +I+ +A+ G+M +A ELF +P +
Sbjct: 167 --------------LSTARKAFDGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKT 212
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV-- 290
VVSW A++SGY G A+E+F M+ G PDDV+++++L ACA LG LE+G+ +
Sbjct: 213 VVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYA 272
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
+C+ M + KV NAL++MYAKCG IE A+++F GM ++DV +WST IGGLA HG
Sbjct: 273 YCSKHGM---LGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGR 329
Query: 351 AEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
A E++ +F M R +V P ITFVG+L ACSHAG V+EG +Y M+++Y +EP + HY
Sbjct: 330 AREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHY 389
Query: 410 GV---------------------------------------HGDVELGRLANKRLLNMRK 430
G HGDVE +A +RL+ +
Sbjct: 390 GCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVETAVVAAERLVELEP 449
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPK 490
+ G+ V+L+N+Y + G W V RK + +K PGCS+IE D+ +++
Sbjct: 450 GDVGNLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCSMIEVDN-VVREFVAGQDLG 508
Query: 491 PNSGNLDT 498
P G + T
Sbjct: 509 PELGGIAT 516
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 197/585 (33%), Positives = 290/585 (49%), Gaps = 116/585 (19%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFV 63
H + L K L + QI + + GF ++ S +I +S S P + +A +F+
Sbjct: 15 HPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKP-LVEFARYLFM 73
Query: 64 KI-------TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
+ + F++N II+ + ++P +A ++ M + + +KF+FS VLKAC+
Sbjct: 74 SRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACS 133
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD------ 170
RL G +HG + + + F++N L+ + CG L A LFD K D
Sbjct: 134 RLGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNS 193
Query: 171 ---------------------------VVAWSSLTAGYARRGE-LSMARSLFDEMPVRDL 202
+++W+S+ +GYAR E L +A LF+EMP RDL
Sbjct: 194 MIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDL 253
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW-------------------------- 236
+SWN MI G K G+ME A+ LFN++PKRDVVSW
Sbjct: 254 ISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPER 313
Query: 237 -----NAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLSLLTACADLGDLEVGKKV 290
NAM++GYV G +AL F +M S E PD+ T+L L+A A LG + G +
Sbjct: 314 DVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVAL 373
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
HC + D +++ L G ALIDMYAKCGSI+ A+ VF + D+ + W+ +IGGLA HG
Sbjct: 374 HCYIEDNGFSLSEKL-GVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGL 432
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
E + +F EM++L V+P +ITF+GVL AC+HAG V+EG F+LMR + +EP ++HYG
Sbjct: 433 GEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYG 492
Query: 411 V---------------------------------------HGDVELGRLANKRLLNMRKD 431
H + +G K L+++
Sbjct: 493 CMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSY 552
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
YVLLSNIYA G WN V ++R +M D+KK PGCS IE +
Sbjct: 553 NPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELE 597
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 190/550 (34%), Positives = 282/550 (51%), Gaps = 87/550 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +KC + LK++ L+ D L L+ + G +NYA +F +I P
Sbjct: 11 LLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSL 70
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+++N++I+G + S++P +A+ +Y +M + P+ FTF FVLKAC+ + N+G CVH
Sbjct: 71 YIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNC 130
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY--------- 181
IVK GFE + + +L+ +A CGD+ A +FD K +VVAW+SL AG
Sbjct: 131 IVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEA 190
Query: 182 --------------------------ARRGELSMARSLFDEM------PVRDLVSWNVMI 209
AR +L+ R + D P + ++NV++
Sbjct: 191 VRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVIL 250
Query: 210 TG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
YAK G ++ A +LFN++P R++V+WN+MI Y G +AL++F +MR G
Sbjct: 251 ATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGF 310
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
PD T L ++ ACA LG L G+ +H + T+ G AL+DMYAK G ERA
Sbjct: 311 DPDKATFLCVIGACAHLGALVSGQALH-AYVSKTNLTDDTAIGTALVDMYAKSGDAERAQ 369
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR-LKVRPTEITFVGVLVACSHA 383
+VF ++ +DV+ W++LI GLA HG EE++ F++MQ + P EIT++GVL ACSH
Sbjct: 370 QVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHV 429
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV--------ELGRLANK-----------R 424
GKVE+GK +F M++ + IEP +HYG D+ E RL K
Sbjct: 430 GKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSA 489
Query: 425 LLN--------------------MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
LLN + D SG YVLLSNIYA W V+ R+LM + I
Sbjct: 490 LLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELMKERKI 549
Query: 465 KKQPGCSLIE 474
+K G S +E
Sbjct: 550 QKSLGHSSVE 559
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 182/508 (35%), Positives = 278/508 (54%), Gaps = 62/508 (12%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
K C ++R LKQ+ A + G D++ E++ + I YA +F ++ E + F
Sbjct: 23 KACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFA 82
Query: 73 YNTIIRGSAQSQN-PLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+NT+IR A++Q+ LDA+ ++ QM + +++PN+FTF VLKAC + G VHG
Sbjct: 83 WNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGL 142
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++K+G + FV +L+ + CG + A+VLF Y +
Sbjct: 143 LLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLF-----------------YRNVEGVDDV 185
Query: 191 RSLFDEMPVRD--LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
R+L + R+ +V NVM+ GYA+ G ++ A ELF+ + +R VVSWN MISGY G
Sbjct: 186 RNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGF 245
Query: 249 NKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
K+A+E+F M +G+ P+ VT++S+L A + LG LE+GK VH + VL G
Sbjct: 246 YKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVL-G 304
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
+AL+DMYAKCGSIE+AI+VF + +V TW+ +IGGLA HG A + M++ +
Sbjct: 305 SALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGIS 364
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P+++T++ +L ACSHAG V+EG+ +F M + ++P I HYG
Sbjct: 365 PSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEE 424
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+H ++++G A + L+ M +SG YV LSN+YAS G
Sbjct: 425 LILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGN 484
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
W+ V VR +M D DI+K PGCS IE D
Sbjct: 485 WDGVAAVRLMMKDMDIRKDPGCSWIEID 512
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 177/506 (34%), Positives = 269/506 (53%), Gaps = 72/506 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVKITEPD 69
L KC + +KQIQ +T++G D A ++I + ++++A+++F+ +
Sbjct: 16 LLDKCRTISQIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRS 75
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
TF++NT+IR A+ P A+ L+ M + PN +T+SF+ KACT L +G H
Sbjct: 76 TFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHC 135
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ +K G+EF FV+N L++ A G +++A LFD + DV+ W++L GY R G++ +
Sbjct: 136 QSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLI 195
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
R LFD+MP R+ VSW+ MITGY + G E+A ELFN + +ISG+
Sbjct: 196 GRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAM----------LISGF------ 239
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
P+ ++ + ACA LG L+ G+ +HC + + +V+ G A
Sbjct: 240 ---------------WPNHAGIVCAINACASLGALDQGRWIHCYIKRNRMDLDRVM-GAA 283
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
LIDMYAKCG IE A +F +R+RDV ++ LI GLA HG + ++ +F M V P
Sbjct: 284 LIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPN 343
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
E+TFV VL ACS G V++G + F+ M Y EP ++HYG
Sbjct: 344 EVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGCLVDLLGRAGKLEEAKKLV 403
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
V+GDVELG + L + D SG +V+LSN+YAS +W+
Sbjct: 404 KEMPMKPDSYVLGALLNASRVYGDVELGEETVESLAQLSLDHSGVHVVLSNMYASANKWD 463
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEAD 476
V +VR+ M D ++K PGCSLI+ D
Sbjct: 464 EVARVRRGMGDKKVRKVPGCSLIKVD 489
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 190/583 (32%), Positives = 286/583 (49%), Gaps = 113/583 (19%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP--GAINYAHKMFV 63
H S L C L++L+ I A + G ++ + AL +L+ V+ P + YA +F
Sbjct: 34 HPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLL-ELCVISPHFDGLPYAISVFE 92
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
I EP+ ++NT+ RG A S +P+ A+ LY M + PN +TF F+LK+C +
Sbjct: 93 TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKE 152
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFH-------------------------------AN 152
G +HG ++K G++ + FV SLI + A+
Sbjct: 153 GQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYAS 212
Query: 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV------------- 199
G + +A LFD DVV+W+++ +GYA G A LF EM
Sbjct: 213 RGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTV 272
Query: 200 -------------RDLVSW-------------NVMITGYAKQGEMEKANELFNEVPKRDV 233
R + SW N ++ Y+K GE+E A LF + +DV
Sbjct: 273 VSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDV 332
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
+SWN +I GY + K+AL +F+EM GERP+DVTMLS+L ACA LG +++G+ +H
Sbjct: 333 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVY 392
Query: 294 L-LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ + S +LIDMYAKCG IE A +VF + + +S+W+ +I G A HG A+
Sbjct: 393 IDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRAD 452
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+ +F M+++ + P +ITFVG+L ACS +G ++ G+ F+ M +Y I P + HYG
Sbjct: 453 AAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCM 512
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+ G+VELG + L+ + +
Sbjct: 513 IDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENP 572
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YVLLSNIYA+ G WN V K+R L++D +KK PGCS IE D
Sbjct: 573 GCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 615
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 95/430 (22%), Positives = 173/430 (40%), Gaps = 56/430 (13%)
Query: 22 KQIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
+Q+ + + +GF S+ + L +YS G + A +F + D +NT+I G
Sbjct: 286 RQVHSWIDDHGFGSNLKIVNSLMDLYSKC----GELETACGLFEGLLYKDVISWNTLIGG 341
Query: 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY--GFE 137
+A+ L+ +M + +PN T +L AC L ++G +H I K
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSAT 401
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+R SLI +A CGD+ A +F+ + +W+++ G+A G A +F M
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRM 461
Query: 198 PV----RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS-----WNAMISGYVLCGM 248
D +++ +++ ++ G ++ +F + + ++ + MI G+
Sbjct: 462 RKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGL 521
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM---TSGVAKVL 305
K+A EM M PD V SLL AC G++E+G+ L+ + G +L
Sbjct: 522 FKEAEEMINNMEM---EPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLL 578
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDV------------STWSTLIGGLAFHGFAEE 353
++YA G ++ + D+ + S I G FH E
Sbjct: 579 S-----NIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 633
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413
M EM+ V AG V + + + M +E+ E +RH+
Sbjct: 634 IYGMLEEME---------------VLLEKAGFVPDTSEVLQEMEEEWK-EGALRHHSEKL 677
Query: 414 DVELGRLANK 423
+ G ++ K
Sbjct: 678 AIAFGLISTK 687
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 190/592 (32%), Positives = 293/592 (49%), Gaps = 111/592 (18%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +KC ++ LKQI + G +SD + +I G + YA ++F I +P
Sbjct: 13 LLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTL 72
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F++NT+I+G ++ +P + V +Y M +IKP++FTF F+LK TR + G +
Sbjct: 73 FIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNH 132
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
VK+GF+ N FV+ + I+ + C ++ A +FD +VV W+ + +GY R + +
Sbjct: 133 AVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKS 192
Query: 191 RSLFDEMPV---------------------------------------RDLVSWNVMITG 211
+ LF EM R+L+ NV+I
Sbjct: 193 KMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDM 252
Query: 212 YAKQGEMEKANEL-------------------------------FNEVPKRDVVSWNAMI 240
+A GEM++A + F+++P+RD VSW AMI
Sbjct: 253 FAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMI 312
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
GY+ +AL +F EM+ +PD+ TM+S+LTACA LG LE+G+ V T +D S
Sbjct: 313 DGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVK-TYIDKNSI 371
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
GNALIDMY KCG++ +A +VF M +D TW+ +I GLA +G EE++AMF
Sbjct: 372 KNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSN 431
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M + P EIT++GVL AC+HAG VE+G+ +F M ++ I+PN+ HYG
Sbjct: 432 MIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAG 491
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
VH +V+L +A K++L + + YVLL N
Sbjct: 492 RLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCN 551
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
IYA+ W + +VRKLM + IKK PGCSL+E + + +++ + P S
Sbjct: 552 IYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVY-EFVAGDQSHPQS 602
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 173/505 (34%), Positives = 266/505 (52%), Gaps = 79/505 (15%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C+ + LKQ + + G ++D+ A+ +I ++ G +NYA ++F KI PD ++YN
Sbjct: 30 CSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYN 89
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
TI RG + Q + +F+Y++M S+ PNKFT+ +++AC G +H ++K+
Sbjct: 90 TIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKF 149
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
GF + F N+LI+ + N L A +FD + DVV+W+SL GY++ G + AR +F
Sbjct: 150 GFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVF 209
Query: 195 DEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
+ MP R+ VSWN MI Y + + +A LF+ + +VV
Sbjct: 210 ELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVL------------------- 250
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKVLHGNAL 310
D S+L+AC LG LE GK +H + +++ S +A +
Sbjct: 251 ------------DKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLA-----TTV 293
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMY KCG +E+A EVF + + +S+W+ +IGGLA HG E +I +F+EM+R V P
Sbjct: 294 IDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDG 353
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
ITFV VL AC+H+G VEEGK YF+ M + ++P + H+G
Sbjct: 354 ITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLIN 413
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+HG+ ELG K+++ + SG YVLL+N+YAS G W
Sbjct: 414 EMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWED 473
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEAD 476
V KVRKLM+D +KK PG S+IE++
Sbjct: 474 VAKVRKLMNDRGVKKAPGFSMIESE 498
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 187/507 (36%), Positives = 277/507 (54%), Gaps = 64/507 (12%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIY--SGSVVIPGAINYAHKMFVKITEPDTFM 72
C +R L QI A+ +G D+ A E++ + S + ++YAHK+F ++ + + F
Sbjct: 33 CRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFS 92
Query: 73 YNTIIRGSAQSQNP---LDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+NTIIRG ++S + Y M ++PN+FTF VLKAC + G +HG
Sbjct: 93 WNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHG 152
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-KMDVVAWSSLTAGYARRGELS 188
+KYGF + FV ++L+ + CG + A VLF + + D+V +T R GE+
Sbjct: 153 LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV---MTDRRKRDGEI- 208
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
V WNVMI GY + G+ + A LF+++ +R VVSWN MISGY L G
Sbjct: 209 --------------VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
K A+E+F EM+ RP+ VT++S+L A + LG LE+G+ +H D + VL G+
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVL-GS 313
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
ALIDMY+KCG IE+AI VF + +V TWS +I G A HG A ++I F +M++ VRP
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
+++ ++ +L ACSH G VEEG++YF M +EP I HYG
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+ G+VE+G+ L++M +SG YV LSN+YAS+G W
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ V ++R M + DI+K PGCSLI+ D
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDID 520
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 174/508 (34%), Positives = 275/508 (54%), Gaps = 72/508 (14%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S L K CT ++ L++I A + G A+ ++ + G INYA+ +F +I P
Sbjct: 28 SILEKHCTTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSP 87
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
+ F +NTIIRG +QS P A+ L+ M S++P++ T+ V KA +L + G +
Sbjct: 88 NLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQL 147
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG+++K G +F+ F+RN++IY +ANCG L+ F D+VAW+S+ G A+ GE+
Sbjct: 148 HGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEV 207
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
+R LFDEMP+R+ VSWN MI+GY + G +
Sbjct: 208 DESRKLFDEMPLRNTVSWNSMISGYVRNGRL----------------------------- 238
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
++AL++F +M+ +P + TM+SLL A A LG L+ G+ +H + + V+
Sbjct: 239 --REALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIH-DYIRKNNFELNVIVT 295
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
++IDMY KCGSI A +VF + +S+W+T+I GLA +G E+I +F ++ +R
Sbjct: 296 ASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLR 355
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------------- 411
P ++TFVGVL AC+++G V++ K+YF LM Y IEP+I+HY
Sbjct: 356 PDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEE 415
Query: 412 -----------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
HG+VEL + A K ++++ ++S YVLLSNIYA+ +
Sbjct: 416 LIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQ 475
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ + R M + I+K+PGCSLIE +
Sbjct: 476 FEEAMEQRLSMKEKQIEKEPGCSLIEVN 503
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 193/573 (33%), Positives = 283/573 (49%), Gaps = 117/573 (20%)
Query: 20 TLKQIQALVTINGFNSDSSALRELIYSGSVVIP--GAINYAHKMFVKITEPDTFMYNTII 77
+++ I A + G ++ + AL +L+ VV P YA +F I EP+ ++NT+
Sbjct: 3 SVRXIHAQMIKTGLHNTNYALSKLL-EFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMF 61
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
RG A S +P+ A+ LY M + P+ +TF F+LK+C + R G +HG ++K GF+
Sbjct: 62 RGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFD 121
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR------------- 184
+ +V SLI +A G L A +FD + DVV++++L AGY R
Sbjct: 122 LDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEI 181
Query: 185 ------------------GELSMARSLFDEMPV--------------------------- 199
G A LF EM +
Sbjct: 182 PGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELG 241
Query: 200 RDLVSW-------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
R + SW N +I Y+K GE+E A ELF+ + +DV+SWN +I GY
Sbjct: 242 RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHM 301
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
+ K+AL +F+EM GE P+DVTMLS+L ACA LG +++G+ +H + GV +
Sbjct: 302 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVS 361
Query: 307 G--NALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
+LIDMYAKCG I+ A +VF M +R +STW+ +I G A HG A + +F M+
Sbjct: 362 SLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRM 421
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
+ P +ITFVG+L ACSH+G ++ G+ F+ M Y I P + HYG
Sbjct: 422 NGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFK 481
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
+HG++ELG K+L+ + SG YVLLSNIYA
Sbjct: 482 EAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYA 541
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQ-PGCSLIEAD 476
+ G WN V K+R L++D +KK+ PGCS IE D
Sbjct: 542 AAGRWNEVAKIRALLNDKGMKKKVPGCSSIEID 574
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 178/508 (35%), Positives = 270/508 (53%), Gaps = 78/508 (15%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
NL+TLKQ + I G N D+ + + I + S G + YA+ +F P+T+++NT+
Sbjct: 27 NLKTLKQSHCYMIITGLNRDNLNVAKFIEACSN--AGHLRYAYSVFTHQPCPNTYLHNTM 84
Query: 77 IRGSAQSQNPLD---AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
IR + P A+ +Y ++ KP+ FTF FVLK R+ G +HG++V
Sbjct: 85 IRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVV 144
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+GF+ + V LI + +CG L GDA R +
Sbjct: 145 FGFDSSVHVVTGLIQMYFSCGGL--------GDA-----------------------RKM 173
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP--KRDVVSWNAMISGYVLCGMNKQ 251
FDEM V+D+ WN ++ GY K GEM++A L +P R+ VSW +ISGY G +
Sbjct: 174 FDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASE 233
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
A+E+F+ M PD+VT+L++L+ACADLG LE+G+++ C+ +D V NA+I
Sbjct: 234 AIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERI-CSYVDHRGMNRAVSLNNAVI 292
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DMYAK G+I +A++VF + +R+V TW+T+I GLA HG E++AMF M + VRP ++
Sbjct: 293 DMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDV 352
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TF+ +L ACSH G V+ GK+ F MR +Y I PNI HYG
Sbjct: 353 TFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKS 412
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
VH D+ELG A L+ + + SG+Y+LL+N+Y++ G W+
Sbjct: 413 MPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDES 472
Query: 453 EKVRKLMDDSDIKKQPGCSLIEADDKAF 480
+R +M +KK G S IE +++ +
Sbjct: 473 RMMRNMMKGIGVKKMAGESSIEVENRVY 500
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 183/512 (35%), Positives = 264/512 (51%), Gaps = 79/512 (15%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
R + L K + L QI A++ +G D + S G ++Y+ +F +
Sbjct: 32 RLAVLIDKSKTISHLLQIHAVLFRHGL--DHHPILNFKLQRSYASLGRLDYSVALFGRTQ 89
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
P F + II G A A+ Y QM ++PN FTFS +LK C G
Sbjct: 90 NPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPI----EPGKA 145
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H + VK GF+ + +VR L +DV YAR G+
Sbjct: 146 LHSQAVKLGFDSDLYVRTGL----------------------LDV---------YARGGD 174
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ A+ LFD MP + LVS M+T YAK GE++ A LF+ + +RD V WN MI GY
Sbjct: 175 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 234
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
GM +AL +F M +P++VT+LS+L+AC LG LE G+ VH + + +G+ +H
Sbjct: 235 GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN--NGIQFNVH 292
Query: 307 -GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
G AL+DMY+KCGS+E A VF + D+DV W+++I G A HGF++E++ +F+ M R+
Sbjct: 293 VGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG 352
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
+ PT ITF+G+L AC H+G V EG F M+DEY IEP I HYG
Sbjct: 353 LHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQA 412
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+HG + LG + L++ SG Y+LLSNIYA+
Sbjct: 413 YELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAV 472
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G W+ V ++R +M DS +KK+PGCS IE ++K
Sbjct: 473 GNWDGVARLRTMMKDSGVKKEPGCSSIEVNNK 504
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 183/542 (33%), Positives = 281/542 (51%), Gaps = 82/542 (15%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP--DTFMY 73
T+ R L Q+ A + +G + S + + P + YA +F P T Y
Sbjct: 27 TDPRYLPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCY 86
Query: 74 NTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
N ++R + +P DA+ L+ +M + S+ P++ T + LK+C+R+ ++G + V
Sbjct: 87 NVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAV 146
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE----LS 188
K G +RFV +SLI+ +A+C D+ A +LFD + VV W+++ Y + G +
Sbjct: 147 KRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVE 206
Query: 189 MARSL------FDEMPVRDLVS------------W-----------------NVMITGYA 213
M + + FDE+ + +V+ W +I YA
Sbjct: 207 MFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYA 266
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
K GE+ KA LF+ + RDVV+W+AMISGY ++AL +F EM+ P+DVTM+S
Sbjct: 267 KCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVS 326
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
+L+ACA LG LE GK VH + + +L G AL+D YAKCG I+ A+E F M +
Sbjct: 327 VLSACAVLGALETGKWVHSYIRRKRLSLTIIL-GTALVDFYAKCGCIDDAVEAFESMPVK 385
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
+ TW+ LI G+A +G E++ +F M++ + PT++TF+GVL+ACSH+ VEEG+++F
Sbjct: 386 NSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHF 445
Query: 394 KLMRDEYNIEPNIRHYG---------------------------------------VHGD 414
M +Y I+P HYG VH +
Sbjct: 446 DSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKN 505
Query: 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
VE+G A K+++++ SGDY+LLSNIYAS G+W +RK M D I+K PGCSLIE
Sbjct: 506 VEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIE 565
Query: 475 AD 476
D
Sbjct: 566 LD 567
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 189/571 (33%), Positives = 280/571 (49%), Gaps = 113/571 (19%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP--GAINYAHKMFVKITEPDTFMYNT 75
L++L+ I A + G ++ + AL +LI ++ P + YA +F I EP+ ++NT
Sbjct: 3 LQSLRMIHAQMIKTGLHNTNYALSKLI-EFCILSPHFDGLPYAISVFETIQEPNLLIWNT 61
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+ RG A S +P+ A+ LY M + PN +TF F+LK+C + G +HG ++K G
Sbjct: 62 MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLG 121
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDA------------------------KM-- 169
+ + +V SLI + G L A +FD KM
Sbjct: 122 CDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFD 181
Query: 170 -----DVVAWSSLTAGYARRGELSMARSLFDEMPV------------------------- 199
DVV+W+++ +GYA G A LF +M
Sbjct: 182 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 241
Query: 200 -RDLVSW-------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
R + SW N +I Y+K GE+E A LF +P +DV+SWN +I GY
Sbjct: 242 GRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTH 301
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
+ K+AL +F+EM GE P+DVTMLS+L ACA LG +++G+ +H + GVA
Sbjct: 302 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANAS 361
Query: 306 H-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
+LIDMYAKCG IE A +VF + + +S+W+ +I G A HG A+ S +F M++
Sbjct: 362 SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKN 421
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------- 410
+ P +ITFVG+L ACSH+G ++ G+ F+ M +Y + P + HYG
Sbjct: 422 GIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKE 481
Query: 411 -------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
+HG+VELG + L+ + + G YVLLSNIYA+
Sbjct: 482 AEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYAT 541
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G WN V R L++D +KK PGCS IE D
Sbjct: 542 AGRWNEVANTRALLNDKGMKKVPGCSSIEID 572
>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 184/575 (32%), Positives = 289/575 (50%), Gaps = 111/575 (19%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSAL-RELIYSGSVVIPGAINYAHKMFVKITE 67
S+L +++ KQ+ AL+ I+G + L R+++ S S Y H +
Sbjct: 8 SKLSTISLSVKQAKQVHALILIHGLSHLEPILARQILLSASNYSATVAQYVHSVLHHSKS 67
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
PD+F + IR S Q +A LY QM++ + P F S LKAC R+ YR G +
Sbjct: 68 PDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSI 127
Query: 128 HGKIVKYGFEFNR---FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
HG++ K+GF +V +L+ F+ GD+ A +FD A+ +VV+W+S+ AGY +
Sbjct: 128 HGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKS 187
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS--- 241
G+L +A+ +FDE+P +D++SWN MI+GYA+ G+MEKA LF ++P+R+ SWNAMIS
Sbjct: 188 GDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYV 247
Query: 242 ----------------------------GYVLCG-------------------------- 247
GY CG
Sbjct: 248 EFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIAC 307
Query: 248 -----MNKQALEMFEEMRS--VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
K+AL++F M + V +PD++T+ S+++AC+ LGDL G + + + G
Sbjct: 308 YAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRL--G 365
Query: 301 VAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ H AL+D+YAKCGSI++A E+F G+R +D+ ++ +I G +G A ++I +F
Sbjct: 366 IEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFD 425
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------- 411
EM ++ P ITF+G+L A +HAG VEEG F M+ +YN+ P++ HYG+
Sbjct: 426 EMVDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMK-KYNLVPSVDHYGIMVDLFGRA 484
Query: 412 -------------------------------HGDVELGRLANKRLLNMRKDESGDYVLLS 440
H +VE G +A + + D +G LLS
Sbjct: 485 GRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYCSLLS 544
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
NIYAS W+ V+++RK+ + K PGCS +E+
Sbjct: 545 NIYASGERWDDVKRLRKVTKEKGFSKIPGCSWMES 579
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 168/489 (34%), Positives = 264/489 (53%), Gaps = 44/489 (8%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
++ +L ++Q A + G D+ SA + + ++ + P ++YAH + +I P+ F
Sbjct: 47 ERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGF 106
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+N++IR A S P A+ ++ +M + P+K++F+FVLKAC G +HG
Sbjct: 107 THNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLF 166
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+K G + FV N+L+ + G A + D D V+W+SL + Y +G + AR
Sbjct: 167 IKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEAR 226
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+LFDEM R++ SWN MI+GYA G +++A E+F+ +P RDVVSWNAM++ Y G +
Sbjct: 227 ALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNE 286
Query: 252 ALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
LE+F +M E+PD T++S+L+ACA LG L G+ VH +D + AL
Sbjct: 287 VLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVH-VYIDKHGIEIEGFLATAL 345
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMY+KCG I++A+EVF RDVSTW+++I L+ HG ++++ +F EM +P
Sbjct: 346 VDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNG 405
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLAN-------- 422
ITF+GVL AC+H G +++ +K F++M Y +EP I HYG D+ LGR+
Sbjct: 406 ITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDL-LGRMGKIEEAEELV 464
Query: 423 --------------------------------KRLLNMRKDESGDYVLLSNIYASRGEWN 450
RLL + +S Y +SN+YAS G W
Sbjct: 465 NEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWE 524
Query: 451 RVEKVRKLM 459
+V R+ M
Sbjct: 525 KVIDGRRNM 533
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 178/567 (31%), Positives = 290/567 (51%), Gaps = 111/567 (19%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+ +K++ A ++G + A+ +++ S +++ P + +AHK+F +I P TF++N +I
Sbjct: 466 MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLV-FAHKVFDQIEAPTTFLWNILI 524
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
RG AQS P DA+ Y + + + P+ TF F+LKAC R+ N G +H I K G
Sbjct: 525 RGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLL 584
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA--------------- 182
+ FV NSLI+ +A CG+L A +FD DVV+W+SL GY+
Sbjct: 585 SDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLM 644
Query: 183 --------------------RRGELSMA----RSLFDEMPVRDLVSWNVMITGYAKQGEM 218
R G+ SMA R + D D+ N ++ + ++G++
Sbjct: 645 QNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQL 704
Query: 219 EKAN-------------------------------ELFNEVPKRDVVSWNAMISGYVLCG 247
+ A ++F+++PK+D++SW++MISGY
Sbjct: 705 QSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQAN 764
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
ALE+F +M+ +PD + + S++++CA LG L++GK VH + + A +
Sbjct: 765 HFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVH-EYVRRNNIKADTIME 823
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
N+LIDMY KCGS + A++VF M+++D +W+++I GLA +GF +ES+ +F+ M R
Sbjct: 824 NSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFR 883
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P +TF+GVL+AC++A VEEG +F+ M+ Y++EP ++HYG
Sbjct: 884 PNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALR 943
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
HGDV + + K+L + SG+Y LLSN YAS
Sbjct: 944 FITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHR 1003
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEA 475
W+ VR+ M D+D++K PGCS +EA
Sbjct: 1004 WSEAMNVRQCMADTDVRKSPGCSAVEA 1030
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 140/446 (31%), Positives = 234/446 (52%), Gaps = 77/446 (17%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
AH++F + P ++ +++ + +P DA+ L+ + + + F+F LKAC
Sbjct: 47 AHQVFDRRPTP----WHALLKAYSHGPHPQDALQLFRH-ARWHAADDTYAFTFALKACAG 101
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L + +HG +V+ GFEF +V +L+ + CG L D++M
Sbjct: 102 LGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCL--------ADSRMA------- 146
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
F+EMPV++ VSWNV+ITG+A GE+E A LF +P R+VVSW+
Sbjct: 147 ----------------FEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWS 190
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
MI GY +A+ +F M + G P ++T+L+++ A +++G + +G+ +H +
Sbjct: 191 GMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALH-GYCEK 249
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIA 356
V V GN+LID+YAK GSI+ ++ VF M D R++ +W+++I G A HG + +++
Sbjct: 250 EGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVE 309
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----- 411
+F +M+R +RP ITF+ VL ACSH G VE+G +FK M EYNI P+++H+G
Sbjct: 310 LFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDML 369
Query: 412 ----------------------------------HGDVELGRLANKRLLNMRKDESGDYV 437
+G+VE+G K++L + ++ GD+V
Sbjct: 370 GRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFV 429
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSD 463
+LSN+ ++ E VRKL+D +
Sbjct: 430 VLSNMLTELRRFSDAEIVRKLVDQRN 455
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 89/413 (21%), Positives = 166/413 (40%), Gaps = 82/413 (19%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + YA +F ++ + ++ +I G ++ P++AV L+ +M I P++ T V+
Sbjct: 169 GEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVV 228
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-KMDV 171
A + + +G +HG K G ++ V NSLI +A G + + +FD + ++
Sbjct: 229 PALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNL 288
Query: 172 VAWSSLTAGYARRGELSMARSLFDEM------PVR------------------------- 200
V+W+S+ +G+A G A LF +M P R
Sbjct: 289 VSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKS 348
Query: 201 ---------DLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNK 250
D+ + +I + G + +A ++ + P + + W ++ C
Sbjct: 349 MIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLG----CCSKY 404
Query: 251 QALEMFEE-MRSV--GERP---DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-- 302
+EM E M+ + ER D V + ++LT D E+ +K L+D + V
Sbjct: 405 GEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRK----LVDQRNSVKSF 460
Query: 303 ---------KVLHGNALIDMYAKC---------------GSIERAIEVFLGMRDRDVSTW 338
K LH ++ C + A +VF + W
Sbjct: 461 FNIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLW 520
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+ LI GLA ++IA +++ Q + P +TF +L AC+ + EG++
Sbjct: 521 NILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQ 573
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 179/511 (35%), Positives = 271/511 (53%), Gaps = 52/511 (10%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGS-VVIPGAINYAHKMFVKITEP----- 68
C L LKQ+ +T NG + S L +L+ +G+ + P +++YA K F E
Sbjct: 35 CKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDD 94
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
FM N++IRG + + +A+ LY +M + PN +TF FVL CT++ G VH
Sbjct: 95 ALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVH 154
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G +VK G E + F++N LI+F+A CG ++ +F+G ++ +VV+W+SL GYAR
Sbjct: 155 GSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPK 214
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
A SLF EM + +V N ++ Y K G ++ A LF+E R++V +N ++S Y G+
Sbjct: 215 EAVSLFFEMLNKVMV--NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGL 272
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC----TLLDMTSGVAKV 304
++AL + +EM G RPD VTMLS ++A A L DL GK H T ++ +
Sbjct: 273 AREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDM 332
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
AL+DM+A+CG + A++VF M +RDVS W+ IG +A G E + +F +M
Sbjct: 333 RLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQ 392
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------- 410
V+P + FV VL ACSH G+VE+G F LM D + I P I HYG
Sbjct: 393 GVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLRE 451
Query: 411 -------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
VH +VE+ A +R+ + +G +VLLSNIYAS
Sbjct: 452 AFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYAS 511
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G+W V +VR + + ++K PG S ++ +
Sbjct: 512 AGKWTDVARVRLNLREKGVRKVPGSSSVQVN 542
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 188/564 (33%), Positives = 288/564 (51%), Gaps = 92/564 (16%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV--IPGAINYAHKMFVKITEPDTF 71
KC+NL ++ QI A V + D +LI + S+ + A+N +F + P+
Sbjct: 30 KCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVN----VFNHVPHPNVH 85
Query: 72 MYNTIIRGSAQSQN----PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
+YN+IIR A + + P +A F QM+K + P+ FT+ F+LKACT + +
Sbjct: 86 LYNSIIRAHAHNTSHPSLPFNAFF---QMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMI 142
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCG--------------------------------- 154
H + K+GF + FV NSLI ++ CG
Sbjct: 143 HAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCG 202
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK 214
+L A LFD + D+V+W+++ GYA+ GE+ A LF+ MP R++VSW+ M+ GY+K
Sbjct: 203 ELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSK 262
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
G+M+ A LF+ P ++VV W +I+GY G ++A E++ +M G RPDD ++S+
Sbjct: 263 GGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISI 322
Query: 275 LTACADLGDLEVGKKVHCTL--LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG-MR 331
L ACA+ G L +GK++H ++ G KVL NA IDMYAKCG ++ A +VF G M
Sbjct: 323 LAACAESGMLGLGKRIHASMRRWRFRCGT-KVL--NAFIDMYAKCGCLDAAFDVFSGMMA 379
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+DV +W+++I G A HG E+++ +F M P TFVG+L AC+HAG V EG+K
Sbjct: 380 KKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRK 439
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
YF M Y I P + HYG +H
Sbjct: 440 YFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMH 499
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
DV+ R ++L + + G+Y LLSNIYA G+W V VR M ++ +K G S
Sbjct: 500 NDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASS 559
Query: 473 IEADDKAFLQYLFNLKPKPNSGNL 496
IE +++ +F+ + P S ++
Sbjct: 560 IEVEEEVHEFTVFD-QSHPKSDDI 582
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 174/535 (32%), Positives = 279/535 (52%), Gaps = 72/535 (13%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S L K CT TL+Q+ A + G + D + + + + + +Y +F ++ P
Sbjct: 29 STLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSL--SNFSYTTSVFNGVSSP 86
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
T ++NT I+G +++ + V L+ +M++ P+KFT+ ++KAC+++ G H
Sbjct: 87 STVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFH 146
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G V+ G + FV SLI + CG++ A +FD + +VV+W+++ AGYA +L
Sbjct: 147 GSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLV 206
Query: 189 MARSLFDEMPVRDLVSWN-------------------------------VMITGYAKQGE 217
AR LFDEMP ++ VSWN MI GYAK G+
Sbjct: 207 EARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGD 266
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
M A +F E P+RDVV+W+A+ISGYV G +A+++F EM S +PD+ M+SL++A
Sbjct: 267 MASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSA 326
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
C+ +G LE+ K V + + V + ALIDM AKCGS++RA ++F M RD+ +
Sbjct: 327 CSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLIS 386
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
+ +++ GL+ HG +++++F M + P ++ F +L ACS AG V+EG YF+ M+
Sbjct: 387 YCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMK 446
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
+Y+I P+ HY +H D+ELG
Sbjct: 447 TDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELG 506
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ +L + +G+YVLLSNIYA+ +W V +R M + I+K PGCS I
Sbjct: 507 EVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 189/546 (34%), Positives = 280/546 (51%), Gaps = 85/546 (15%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVKITE--PDT 70
+C +R+LKQI A + +G D L ++ + G + G ++YA F+ T+ T
Sbjct: 14 RCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHI--GFVDYAFD-FLNQTDLHVGT 70
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
YNT+I A S P A +Y ++ P+ +TF VLKACT+ L G VHG
Sbjct: 71 LPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGV 130
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
VK GF + +V+NSL++F++ CG A +FD DVV+W+ L +GY R G A
Sbjct: 131 AVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEA 190
Query: 191 RSLFDEMPVRD------------------------------------LVSWNVMITGYAK 214
+LF +M V LV N ++ Y K
Sbjct: 191 INLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVK 250
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
+ +A +LF+E+P RD+VSW ++ISG V C K +LE+F +M+ G PD + + S+
Sbjct: 251 CECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSV 310
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDR 333
L+ACA LG L+ G+ V + G+ +H G AL+DMYAKCG IE A+ +F G+ +R
Sbjct: 311 LSACASLGALDYGRWVQEYI--ERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNR 368
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
++ TW+ L+GGLA HG E++ F M +RP E+TF+ +L AC H+G V EG+ YF
Sbjct: 369 NIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYF 428
Query: 394 -KLMRDEYNIEPNIRHYG---------------------------------------VHG 413
+++ +N P + HYG +G
Sbjct: 429 YQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANG 488
Query: 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+VEL + LL ++ +SG YVLLSNIYA+ W+ V +VR+LM D I+K PG S+I
Sbjct: 489 NVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVI 548
Query: 474 EADDKA 479
E D +A
Sbjct: 549 EVDGEA 554
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/403 (25%), Positives = 177/403 (43%), Gaps = 49/403 (12%)
Query: 13 KKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
K CT ++ Q+ + GF D L++ SV G A ++F ++ D
Sbjct: 113 KACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVC--GKWGGAGRVFDEMLVRD 170
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+ +I G ++ +A+ L+ +M+ + PN TF VL AC R+ Y +MG VHG
Sbjct: 171 VVSWTGLISGYVRTGLFDEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHG 227
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ K F V N+L+ + C L A LFD D+V+W+S+ +G + +
Sbjct: 228 LVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKD 287
Query: 190 ARSLFDEMPV----------------------------------RDLVSWNV-----MIT 210
+ LF +M + R + W++ ++
Sbjct: 288 SLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVD 347
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
YAK G +E A +FN +P R++ +WNA++ G + G +AL+ FE M G RP++VT
Sbjct: 348 MYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVT 407
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL-HGNALIDMYAKCGSIERAIEVFLG 329
L++LTAC G + G+ ++ + L H +ID+ + G ++ A +
Sbjct: 408 FLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRN 467
Query: 330 MR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
M DV W L+ +G E S + + LK + + +
Sbjct: 468 MPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGV 510
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 169/506 (33%), Positives = 275/506 (54%), Gaps = 76/506 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
K CT+++ L++I A + G D+ +A R L + S G INYA+ +F +I P+ F
Sbjct: 4 KNCTSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPA--GDINYAYLVFTQIRNPNLF 61
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
++NTIIRG +QS P +A+ L+ M + +P + T+ V KA +L + G +HG
Sbjct: 62 VWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHG 121
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+++K G E ++F++N+++ + NCG L A +FDG DV
Sbjct: 122 RVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDV------------------ 163
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
V+WN MI G AK GE++K+ LF+++ R+ VSWN+MISGYV G
Sbjct: 164 -------------VTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRF 210
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
+A+E+F M+ G +P + TM+SLL ACA LG L G+ +H ++ + ++ A
Sbjct: 211 FEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVI-TA 269
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
+IDMY+KCGSI++A++VF + +S W++LI GLA G E++ +F +++ ++P
Sbjct: 270 IIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPD 329
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------------ 411
++F+GVL AC+HAG V+ K YF LM + Y IEP+I+HY
Sbjct: 330 HVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELI 389
Query: 412 ---------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+G++E+ + A KR+ + +ES ++LLSN+YA+ +
Sbjct: 390 KSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFE 449
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ R + + + K+PGCSLIE +
Sbjct: 450 EAIEQRLSLKEKQMDKEPGCSLIEVN 475
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 171/509 (33%), Positives = 276/509 (54%), Gaps = 56/509 (11%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
++ L+Q QA + GF + + +LI S+ G++ +A +F + + D+F+ NT+I
Sbjct: 12 IKELEQAQAFIVKAGFYNHIPIITKLIAFSSLSPLGSLPHACALFQETSMDDSFICNTMI 71
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL--------------YRNM 123
R + + PL A+ +Y +M++ + + FT++FVL+AC R +
Sbjct: 72 RAYSNTVFPLKALLIYNRMQRMDVDSDHFTYNFVLRACARAIKCTEMDDQCFGHHIISRK 131
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G +H +I+K GF+ + V+NSL+ ++ G + A ++F+ V+W+ + + Y R
Sbjct: 132 GSEIHARILKLGFDQDHHVQNSLLLVYSGSGLVGFARLIFNEMTVKTAVSWNIMMSAYNR 191
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
+ A L + MP + VSWN ++ Y + + A ++F E+P+RDVVSWN++ISGY
Sbjct: 192 VHDYKSADVLLESMPQTNAVSWNTLLARYIRLNNLVAARKVFEEMPERDVVSWNSIISGY 251
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
V K AL++F M+ R +VT +S+L ACA+LG LE+GKK+H +L + +
Sbjct: 252 VNVKDYKGALDLFHSMKQWNIRATEVTFISILGACAELGALEIGKKIHDSLKEKHYRIEG 311
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
L GNA++DMYAKCG + A+EVF M + VS W+ +I GLA HG E ++ MF M+
Sbjct: 312 YL-GNAIVDMYAKCGELGLALEVFNEMEMKPVSCWNAMIMGLAVHGHCERALEMFDSMKA 370
Query: 364 L--KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
+P ITF+ +L+ACSH G + EG+ +F LM +Y I P+++HYG
Sbjct: 371 EDGDHKPNRITFIALLIACSHKGLLAEGRHFFSLMVTKYKIMPDLKHYGCMIDLLSRWGF 430
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+H VELG + ++L + + GDYVLLSNI
Sbjct: 431 LEEAYVMIKTCPFSSCSVLWRTLLGGCRLHRHVELGEESFRKLAELEPGKDGDYVLLSNI 490
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
YA W+ VE++RK M + + K+ G S
Sbjct: 491 YAEEERWDDVERLRKEMINYGVCKKAGSS 519
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 185/534 (34%), Positives = 280/534 (52%), Gaps = 57/534 (10%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +KC ++ LKQI + G +SD +I G +NYAH++F I P
Sbjct: 13 LLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSM 72
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F++NT+I+G ++ +P + V +Y M +IKP++FTF F LK TR + G +
Sbjct: 73 FIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNH 132
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
VK+GF+ N FV+ + I+ + CG ++ A +FD +VV W+ + +GY R + ++
Sbjct: 133 AVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKIS 192
Query: 191 RSLFDEMPVRDL--VSWNVMITGY----------AKQGEMEKANELFNEVPKRDVVSWNA 238
+ L L + W I Y A GEM++A +F+ + RDVVSW A
Sbjct: 193 KMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTA 252
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MI GY+ AL +F EM+ +PD+ TM+S+L ACA LG LE+G+ V T +D
Sbjct: 253 MIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVK-TCIDKN 311
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
S GNAL+DMY KCG++ +A +VF M +D TW+T+I GLA +G EE++AMF
Sbjct: 312 SNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMF 371
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
M V P EIT++GVL AC V++GK +F M ++ I+P + HYG
Sbjct: 372 SNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGC 427
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
VH +V+L +A K++L + + YVLL
Sbjct: 428 VGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLL 487
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
NIYA+ +W + +VRKLM + IKK PGCSL+E + + +++ + P S
Sbjct: 488 CNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVY-EFVAGDQSHPQS 540
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 186/507 (36%), Positives = 275/507 (54%), Gaps = 52/507 (10%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVKITE--PDT 70
+C +R+LKQI A + +G D L ++ + G + G ++YA F+ T+ T
Sbjct: 14 RCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHI--GFVDYAFD-FLNQTDLHVGT 70
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
YNT+I A S P A +Y ++ P+ +TF VLKACT+ L G VHG
Sbjct: 71 LPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGV 130
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
VK GF + +V+NSL++F++ CG A +FD DVV+W+ L +GY R G A
Sbjct: 131 AVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEA 190
Query: 191 RSLFDEMPVRD------------------------------------LVSWNVMITGYAK 214
+LF +M V LV N ++ Y K
Sbjct: 191 INLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVK 250
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
+ +A +LF+E+P RD+VSW ++ISG V C K +LE+F +M+ G PD + + S+
Sbjct: 251 CECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSV 310
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDR 333
L+ACA LG L+ G+ V + G+ +H G AL+DMYAKCG IE A+ +F G+ +R
Sbjct: 311 LSACASLGALDYGRWVQEYI--ERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNR 368
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
++ TW+ L+GGLA HG E++ F M +RP E+TF+ +L AC H+G V EG+ YF
Sbjct: 369 NIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYF 428
Query: 394 -KLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+++ +N P + HYG D+ L LL+ + +G YVLLSNIYA+ W+ V
Sbjct: 429 YQMISQPFNFSPRLEHYGCMIDL----LCRAGLLD--EAYNGVYVLLSNIYATNERWDDV 482
Query: 453 EKVRKLMDDSDIKKQPGCSLIEADDKA 479
+VR+LM D I+K PG S+IE D +A
Sbjct: 483 TRVRRLMKDKGIRKFPGSSVIEVDGEA 509
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 159/354 (44%), Gaps = 48/354 (13%)
Query: 13 KKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
K CT ++ Q+ + GF D L++ SV G A ++F ++ D
Sbjct: 113 KACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVC--GKWGGAGRVFDEMLVRD 170
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+ +I G ++ +A+ L+ +M+ + PN TF VL AC R+ Y +MG VHG
Sbjct: 171 VVSWTGLISGYVRTGLFDEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHG 227
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ K F V N+L+ + C L A LFD D+V+W+S+ +G + +
Sbjct: 228 LVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKD 287
Query: 190 ARSLFDEMPV----------------------------------RDLVSWNV-----MIT 210
+ LF +M + R + W++ ++
Sbjct: 288 SLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVD 347
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
YAK G +E A +FN +P R++ +WNA++ G + G +AL+ FE M G RP++VT
Sbjct: 348 MYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVT 407
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL-HGNALIDMYAKCGSIERA 323
L++LTAC G + G+ ++ + L H +ID+ + G ++ A
Sbjct: 408 FLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEA 461
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 174/507 (34%), Positives = 278/507 (54%), Gaps = 56/507 (11%)
Query: 15 CTNLRTLKQIQALVTI-NGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
C L++LK I A + I + S + +L+ S GA +YAHK+F +IT+P+ +++
Sbjct: 12 CKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRF--GATDYAHKVFDEITQPNAYLW 69
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
++I G +++ +A L+ QM + I FT S VLKA RL G V
Sbjct: 70 TSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAV------ 123
Query: 134 YGFEFNRFVR------NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
YGF F+ N +I + N ++ A FD + +VV+W+S+ GY + G++
Sbjct: 124 YGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDM 183
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK-ANELFNEVPKRDVVSWNAMISGYVLC 246
+ A+ LFD MPV+DL SWNVM++GY G+ A LF+++P +++V+W+ MI GY
Sbjct: 184 AEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARN 243
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
G +ALE+FE + +PD+ +L +++AC+ LG ++ + + + S ++ +
Sbjct: 244 GQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVG-PSLLSDLRV 302
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
+LIDMYAKCGSIE+A+++F +D+ +ST+I LA HG ++I +F +MQR +
Sbjct: 303 FTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANI 362
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------- 410
+P +TF+GVL AC+H G V+EG+KYFK M +E+ I+P+ +HY
Sbjct: 363 KPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAY 422
Query: 411 -----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
VH +V+L +A L + D SG+Y+LLSNIYA+ G
Sbjct: 423 NLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAG 482
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIE 474
W V KVR + + ++K G S IE
Sbjct: 483 RWGSVAKVRAKIREHRVRKNRGSSWIE 509
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 177/509 (34%), Positives = 271/509 (53%), Gaps = 78/509 (15%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT 75
TNL+TLKQ + I G N D+ + + I + S G + YA+ +F P+T+++NT
Sbjct: 26 TNLKTLKQSHCFMIITGLNRDNLNVAKFIEACSN--AGHLRYAYSVFTHQPFPNTYLHNT 83
Query: 76 IIRGSA---QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+IR + + A+ +Y + KP+ FTF FVLK R+ G VHG+ V
Sbjct: 84 MIRALSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAV 143
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
+GF+ + V LI +++CG L GDA R
Sbjct: 144 VFGFDSSVHVVTGLIQMYSSCGGL--------GDA-----------------------RK 172
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP--KRDVVSWNAMISGYVLCGMNK 250
+FDEM VRD+ WN ++ GY K GEM++A L +P R+ VSW +ISGY G
Sbjct: 173 VFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRAS 232
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+A+E+F+ M PD+VT+L++L+ACADLG LE+G+++ C+ +D V NA+
Sbjct: 233 EAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERI-CSYVDHRGMNRAVSLNNAV 291
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMYAK G+I +A+EVF + +R+V TW+T+I GLA HG E++ MF M + V+P +
Sbjct: 292 IDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPND 351
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
+TF+ +L ACSH G V+ G ++F MR +Y I PNI HYG
Sbjct: 352 VTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIK 411
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
VH D+++G A +L+ + + SG+Y+LL+N+Y++ G W+
Sbjct: 412 SMPFESNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDE 471
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
+RK+M +KK G S IE +++ +
Sbjct: 472 SRMMRKMMKGIGVKKLAGESSIEVENRVY 500
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 181/595 (30%), Positives = 289/595 (48%), Gaps = 114/595 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +KC L LKQIQA + ING D A LI ++ ++Y+ K+ I P+
Sbjct: 59 LLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNI 118
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEK---CSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
F +N IRG ++S+NP ++ LY QM + C +P+ FT+ + K C L ++G +
Sbjct: 119 FSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMI 178
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
G ++K E V N+ I+ A+CGD+ A +FD D+V+W+ L GY + GE
Sbjct: 179 LGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEA 238
Query: 188 SMARSLF----------DEMPVRDLVS-----------------------------WNVM 208
A ++ D++ + LVS N +
Sbjct: 239 EKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNAL 298
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM-------------------- 248
+ ++K G++ +A +F+ + KR +VSW MISGY CG+
Sbjct: 299 MDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWN 358
Query: 249 -----------NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
+ AL +F+EM++ +PD++TM+ L+AC+ LG L+VG +H ++
Sbjct: 359 AMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIH-RYIEK 417
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
S V G +L+DMYAKCG+I A+ VF G++ R+ T++ +IGGLA HG A +I+
Sbjct: 418 YSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISY 477
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------ 411
F EM + P EITF+G+L AC H G ++ G+ YF M+ +N+ P ++HY +
Sbjct: 478 FNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLG 537
Query: 412 ---------------------------------HGDVELGRLANKRLLNMRKDESGDYVL 438
HG+VELG A K+LL + +SG YVL
Sbjct: 538 RAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVL 597
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
L +Y W ++ R++M++ ++K PGCS IE + +++ K +P S
Sbjct: 598 LDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNG-IVCEFIVRDKSRPES 651
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 174/509 (34%), Positives = 275/509 (54%), Gaps = 79/509 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C ++ LKQI A + ++ S L +++ +V G + YA ++F ++ +P+TF
Sbjct: 24 ENCQSMNHLKQIHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQMPQPNTFF 83
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF-----C- 126
YNTIIRG A+S +P V L+ QM + + P++FTF+F++KA +R+ ++ F C
Sbjct: 84 YNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRV-HKVHNFPSTLECD 142
Query: 127 -VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG + KYGF + FV+N+LI +A G A +F+ +DVV+WS L + R G
Sbjct: 143 EIHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGG 202
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
EL +AR +FD+MP +D+VSW M++GY+ KAN
Sbjct: 203 ELELARQVFDDMPEKDVVSWTAMVSGYS------KAN----------------------- 233
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
+++ALE+F EM G RPD+VT++S+++AC +LGD+E G VH + + G L
Sbjct: 234 --CSREALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSL 291
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
NALI+MYAKCG ++RA VF M+ + + TW+++I A HG+AE++ +F M
Sbjct: 292 -CNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSG 350
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
+ P ITF+ +L+A +H G V+EG + F++M +Y IE +I HYG
Sbjct: 351 IAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEA 410
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
++GDV +G K+LL ++ DE G Y+LL +IY +
Sbjct: 411 YELIVTMPIPSNDIVWGALLAACRIYGDVNMGERVVKKLLELKPDEGGYYILLRDIYVAS 470
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
G +R+ M +S K PG S + A
Sbjct: 471 GRTAEANHIRQAMQESGAMKNPGYSWVGA 499
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 178/567 (31%), Positives = 284/567 (50%), Gaps = 111/567 (19%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+ +K++ A ++G + A+ +++ S +++ P + +AHK+F +I P TF++N +I
Sbjct: 1 MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLV-FAHKVFDQIEAPTTFLWNILI 59
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
RG AQS P DA+ Y + + + P+ TF F+LKAC R+ N G +H I K G
Sbjct: 60 RGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLL 119
Query: 138 FNRFVR-------------------------------NSLIYFHANCGDLNTASVLFD-- 164
+ FV NSLI ++ C LF
Sbjct: 120 SDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLM 179
Query: 165 ----------------------GDAKM---------------DVVAWSSLTAGYARRGEL 187
GD M DV ++L + RRG+L
Sbjct: 180 QNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQL 239
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
A +F M VR++V+ N MI YAK ++ A ++F+++PK+D++SW++MISGY
Sbjct: 240 QSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQAN 299
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
ALE+F +M+ +PD + + S++++CA LG L++GK VH + + A +
Sbjct: 300 HFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVH-EYVRRNNIKADTIME 358
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
N+LIDMY KCGS + A++VF M+++D +W+++I GLA +GF +ES+ +F+ M R
Sbjct: 359 NSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFR 418
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P +TF+GVL+AC++A VEEG +F+ M+ Y++EP ++HYG
Sbjct: 419 PNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALR 478
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
HGDV + + K+L + SG+Y LLSN YAS
Sbjct: 479 FITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHR 538
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEA 475
W+ VR+ M D+D++K PGCS +EA
Sbjct: 539 WSEAMNVRQCMADTDVRKSPGCSAVEA 565
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 193/581 (33%), Positives = 287/581 (49%), Gaps = 117/581 (20%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L+++CT+ + LKQI A + D A EL + + A++YA K+F +I +P+
Sbjct: 145 LFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNL 204
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+ +N +IR A S +P+ +V ++ +M PNKFTF ++KA +G VHG
Sbjct: 205 YSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHG 264
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF---DGDAKMDVVAWSSLTAGYARRGE 186
+K F + FV NSLI+F+A+CG L+ A ++F +G+ K D+V+W+S+ G+ + G
Sbjct: 265 MAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNK-DIVSWNSMVTGFVQGGY 323
Query: 187 LSMARSLFDEM-----------------------------PVRDLVSWNVM--------- 208
A LF+ M V D + N M
Sbjct: 324 PDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNA 383
Query: 209 -ITGYAKQGEMEKANELFNEVPKRDVVS-------------------------------W 236
I + K GE+E A LF+ + KRDVVS W
Sbjct: 384 TIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAW 443
Query: 237 NAMISGYVLCGMNKQALEMFEEMR--SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
N +ISGY G K+AL +F E++ G RPD VT+LS L+ACA LG +++G+ +H +
Sbjct: 444 NVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYI 503
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
+ + L +LIDMY+K G +E+AIEVF + ++DV WS +I GLA HG E +
Sbjct: 504 KKERIQLNRNL-ATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAA 562
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
I +F +MQ +V+P +TF +L ACSH+G V+EGK+ F M Y + P +HY
Sbjct: 563 IELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVD 622
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
+HG++EL A RLL + G
Sbjct: 623 VLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGA 682
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
YVLLSN+YA G+W V ++R+ M DS +KK+ GCS IE D
Sbjct: 683 YVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEID 723
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 169/510 (33%), Positives = 279/510 (54%), Gaps = 50/510 (9%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK--MFVKITEPDTFMY 73
T L Q A + ++G S + L+ + + + P A + H +F+ P FM+
Sbjct: 22 TATSHLHQAHAHLIVSGLASHPFTVTRLL-ACAALSPSASDLPHAKTIFLHTHNPSPFMF 80
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
NTII S+++ LD+V Y M P+ FTF F++K+ + +G +H +VK
Sbjct: 81 NTIIMASSRT---LDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVK 137
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM-DVVAWSSLTAGYARRGELSMARS 192
+G + + FV N++I +++ +L +A +FD + DVV+W++L G++ G++ AR
Sbjct: 138 FGLDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARK 197
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
+FD MP+++ VSWN MI+GYA + +A +LF+E+P RD SW+AM+SGY GM +A
Sbjct: 198 IFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEA 257
Query: 253 LEMFEEMRSVGER--PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
L++F EM + G++ P++ ++S ++ACA L LE G+ +H + + + L G L
Sbjct: 258 LDLFMEMVT-GDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTL-GTVL 315
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMY KCGSI A VF M +R+V++W+++I GLA +G +E++A+F +MQ + P
Sbjct: 316 LDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNA 375
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
ITF+ +L CSH+G + EG+ F +M Y I+P ++HYG
Sbjct: 376 ITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVE 435
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+HG VELG KRL+++ G Y LL NI+A+ W+
Sbjct: 436 KMPMKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWDD 495
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEADDKAFL 481
V VR L + K PG + + A++ + +
Sbjct: 496 VAMVRDLEKGRKVLKNPGNNGLGAEEGSIM 525
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 192/568 (33%), Positives = 280/568 (49%), Gaps = 110/568 (19%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+R LK + A + ++G +++ L +LI +V G + YA +MF +I +P+ FMYN++I
Sbjct: 1 MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
RG + S +P+DAV L+ +M + PN+FT FVLKAC VHG +K G
Sbjct: 61 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
FV+N+LI + CG ++ A LFD +V+W+S+ GYA G A LF +M
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKM 180
Query: 198 --------------------PVRDL-----VSWNVMITG--------------YAKQGEM 218
RDL V + + ITG YAK G +
Sbjct: 181 REWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNL 240
Query: 219 -------------------------------EKANELFNEVPKRDVVSWNAMISGYVLCG 247
E A ++F+++P ++VVSWN+MIS Y+ G
Sbjct: 241 HSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREG 300
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
++AL++F +MR+ PD+ T++S+L AC+ LGDL +GKK+H +L L+
Sbjct: 301 QYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLY- 359
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
N+LIDMYAKCG + A+++FL M +++ +W+ +IG LA HG E+I +F EMQ
Sbjct: 360 NSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTL 419
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P EIT G+L ACSH+G V+ G YF M Y + I HY
Sbjct: 420 PDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIE 479
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+HG+VE+G+ K+LL + G YVL+SNIY
Sbjct: 480 LIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQR 539
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
W V+K+RKLM D IKK S IE D
Sbjct: 540 WEDVKKIRKLMIDRGIKKGRAISSIEID 567
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 171/567 (30%), Positives = 288/567 (50%), Gaps = 111/567 (19%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+ +K++ A + ++G ++ A+ ++I S ++ + +AHK+F +I P TF++NT++
Sbjct: 324 MEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLV-FAHKVFEQIESPTTFLWNTLL 382
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
RG AQS P DA+ Y + ++ +KP+ TF FVLKAC + G +H ++K GF
Sbjct: 383 RGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFL 442
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ FV NSLI+ +A CGDL A +FD DVV+W+SL GY++R +LF+ M
Sbjct: 443 LDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELM 502
Query: 198 PVRD-----------------LVSW----------------------NVMITGYAKQGEM 218
+ L W N +I Y + G++
Sbjct: 503 QAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQL 562
Query: 219 EKA-------------------------------NELFNEVPKRDVVSWNAMISGYVLCG 247
+ A ++F+++P +D++SW++MI Y
Sbjct: 563 QSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQAS 622
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+LE+F +M+ +PD V + S+L+ACA LG L++GK +H + ++
Sbjct: 623 HFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIME- 681
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
N+LIDM+AKCG ++ A++VF M ++D +W+++I GLA +GF +E++ +F M R
Sbjct: 682 NSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPR 741
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P E+TF+GVL+AC++ V+EG +F+ M+ +N+EP ++HYG
Sbjct: 742 PNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKN 801
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
HG+V + +A K+L + SGDY+LLSNIYAS
Sbjct: 802 FINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASADR 861
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEA 475
W+ VR+ M D+ ++K P CS++++
Sbjct: 862 WSDALNVRQWMADTAVRKSPACSVVDS 888
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 191/319 (59%), Gaps = 45/319 (14%)
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP++++VSWNV+ITG+A GE+E A LF+++P R+VVSW +I GY + +A+ +F
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH--CTLLDMTSGVAKVLHGNALIDMY 314
M + G P ++T+L+++ A ++LG + +G+ +H C + S A+V GN+LID+Y
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSD-ARV--GNSLIDLY 117
Query: 315 AKCGSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
AK GS++ +++VF M DR ++ +W+++I G A HG + E++ +F EM+R +RP ITF
Sbjct: 118 AKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITF 177
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------------------- 411
+ V+ ACSH G VE+G +FK M EYNI+P I+H+G
Sbjct: 178 LSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLP 237
Query: 412 -----------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
+G+VE+G+ A K + ++ ++ GD+ +LSN+ G ++ E+
Sbjct: 238 VEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQ 297
Query: 455 VRKLMDDSDIKKQPGCSLI 473
RKL+D+ I K PG +L+
Sbjct: 298 ARKLLDERKIVKVPGLALV 316
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/418 (22%), Positives = 168/418 (40%), Gaps = 85/418 (20%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I YA +F ++ + + +I G ++ +AV L+ M I P++ T V+
Sbjct: 20 GEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVV 79
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-KMDV 171
A + L MG +HG VK G + V NSLI +A G + + +FD + ++
Sbjct: 80 PAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNL 139
Query: 172 VAWSSLTAGYARRGELSMARSLFDEM------PVR------------------------- 200
V+W+S+ +G+A G A LF EM P R
Sbjct: 140 VSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKS 199
Query: 201 ---------DLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMI---SGYVLCG 247
++ + +I + G + +A ++ +P + +V+ W ++ S Y
Sbjct: 200 MVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVE 259
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLS-LLTACADLGDLEVGKKVHCTLLD-----MTSGV 301
M K+A++M ++ E D +LS +L D E +K LLD G+
Sbjct: 260 MGKRAIKMISDLER--ESGGDFAVLSNVLNELGRFSDAEQARK----LLDERKIVKVPGL 313
Query: 302 A-------------KVLHGNALIDMYAKC---------------GSIERAIEVFLGMRDR 333
A K LH + ++ C + A +VF +
Sbjct: 314 ALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESP 373
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
W+TL+ GLA +++I +++ Q ++P +TF VL AC+ +EG++
Sbjct: 374 TTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQ 431
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 183/458 (39%), Positives = 255/458 (55%), Gaps = 48/458 (10%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
LKQIQA NG + L+ IP +I YAHK+F I +P F+YN +I+
Sbjct: 4 LKQIQAYTLRNGIEHTKQLIVSLLQ-----IP-SIPYAHKLFDFIPKPTVFLYNKLIQAY 57
Query: 81 AQSQNPLDAVF-LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN 139
+ S P F LYTQM PN+ +F+F+ AC L G +H VK GF
Sbjct: 58 S-SHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGF--- 113
Query: 140 RFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV 199
C DV A ++L YA+ G LS+AR FDEM V
Sbjct: 114 ------------GC----------------DVFALTALVDMYAKLGLLSLARKQFDEMTV 145
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
RD+ +WN MI GYA+ G++E A ELF +P R+V SW AMISGY G +AL MF M
Sbjct: 146 RDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMM 205
Query: 260 RSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKC 317
E RP++VT+ S+L ACA+LG LEVG+++ + +G K L+ NAL++MYA+C
Sbjct: 206 EEETEMRPNEVTLASVLPACANLGALEVGERIE--VYARGNGYFKNLYVSNALLEMYARC 263
Query: 318 GSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
G I++A VF + R ++ +W+++I GLA HG +E+I +F +M R P ++TFVGV
Sbjct: 264 GRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGV 323
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDY 436
L+AC+H G V EG+ +F+ M +++I P + HYG D+ L L + G+Y
Sbjct: 324 LLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDL----LGPGALFELEPSNPGNY 379
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
V+LSNIYA+ G W+ V ++RKLM I K G S IE
Sbjct: 380 VILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIE 417
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 177/537 (32%), Positives = 264/537 (49%), Gaps = 110/537 (20%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
+ YA +F I EP+ ++NT+IRG A S +P+ ++ LY M + PN +TF F+LK
Sbjct: 13 GLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLK 72
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH----------------------- 150
+C + G +HG+++K GF+ + +V SLI +
Sbjct: 73 SCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVS 132
Query: 151 --------ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV--- 199
A+ GD+ +A LFD DVV+W+++ +GYA G A LF+EM
Sbjct: 133 YTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNV 192
Query: 200 -----------------------RDLVSW-------------NVMITGYAKQGEMEKANE 223
R + SW N +I Y+K GE+E A
Sbjct: 193 RPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACG 252
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
LF + +DV+SWN +I GY + K+AL +F+EM GE P+DVTMLS+L ACA LG
Sbjct: 253 LFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGA 312
Query: 284 LEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+++G+ +H + GV +LIDMYAKCG IE A +VF M + +S+W+ +I
Sbjct: 313 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 372
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G A HG A+ S +F M+++ + P +ITFVG+L ACSH+G ++ G+ F+ M +Y +
Sbjct: 373 FGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKM 432
Query: 403 EPNIRHYG---------------------------------------VHGDVELGRLANK 423
P + HYG +HG+VEL +
Sbjct: 433 TPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQ 492
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
L+ + + Y+LLSNIYAS G W V ++R L++ +KK PGCS IE D F
Sbjct: 493 NLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVF 549
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 185/590 (31%), Positives = 290/590 (49%), Gaps = 110/590 (18%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C+ +R LKQIQA +T+ G + + + +I ++ G ++YAH +F ++ +P+TFM
Sbjct: 165 ESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFM 224
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+NT+IRG ++ P+ A + M + ++ + +F F LKAC + G V+ +
Sbjct: 225 WNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVW 284
Query: 133 KYGFEFNRFVRNSLIYFHANCG---------------DLNTASVLFDGDAKMDV------ 171
K GF+ VRN LI+F+A G D+ T + + DG A D
Sbjct: 285 KMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAME 344
Query: 172 --------------VAWSSLTAGYARRGELSM---------------------------- 189
V ++ + + G L M
Sbjct: 345 VFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYV 404
Query: 190 -------ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
AR LFD M +D+ SW M+ GYAK G++E A F++ P+++ V W+AMI+G
Sbjct: 405 KCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAG 464
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
Y K++L++F EM G P + T++S+L+AC L L +G +H +
Sbjct: 465 YSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPL 524
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
V NA++DMYAKCGSI+ A EVF M +R++ +W+T+I G A +G A+++I +F +M+
Sbjct: 525 SVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMR 584
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------ 410
+ P ITFV +L ACSH G + EG++YF M +Y I+P HY
Sbjct: 585 NMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLL 644
Query: 411 ---------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
+HG+VEL RL+ LL + ++SG YVLL+N
Sbjct: 645 EEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTC 704
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
A+ +W+ V +VR LM D +KK PG SLIE D F+++L + P S
Sbjct: 705 ANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDG-GFVEFLVADESHPQS 753
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 174/511 (34%), Positives = 266/511 (52%), Gaps = 80/511 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C N+ LK I A V + S + +++ + YA +F ++ EP+ ++
Sbjct: 22 QNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKT--EDLGYASLLFKQVKEPNGYL 79
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKC-------SIKPNKFTFSFVLKACTRLLYRNMGF 125
YN +IR ++ A+ Y +M + I P++FTF FV+K+C+ L+ N+G
Sbjct: 80 YNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGK 139
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
VH + K+G + N + N+LI + C L A +FDG
Sbjct: 140 QVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDG-------------------- 179
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
M RD +SWN +I+G+ G+M KA LF+ +P R +VSW AMISGY
Sbjct: 180 -----------MVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTR 228
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
G AL +F +M+ VG PD+++++S+L ACA LG LEVGK +H D + K
Sbjct: 229 LGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIH-MYCDRNGLLRKTS 287
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
NAL++MY+KCG I +A ++F M DV +WST+IGGLA HG A E+I +F+ M++ K
Sbjct: 288 ICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAK 347
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
+ P ITF+G+L AC+HAG EG YF M +Y+IEP + HYG
Sbjct: 348 IEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQA 407
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
H ++++ +A + L + D++G+YVLLSNIYA
Sbjct: 408 LDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADL 467
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+W+ V ++RKL+ +KK PG SLI+ ++
Sbjct: 468 AKWDGVSRMRKLIKSKSMKKTPGSSLIDINN 498
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 177/502 (35%), Positives = 251/502 (50%), Gaps = 75/502 (14%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK-ITEPDTF 71
+KC LKQI A + +G D A+ + + +YAH +F PDTF
Sbjct: 19 QKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSS--FSSYAHDVFFNGFDRPDTF 76
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
++N +IRG + S P ++ LY +M CS N +TF F+LKAC+ L +H I
Sbjct: 77 LWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHI 136
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
K+G+ + + NSLI YA G A
Sbjct: 137 TKFGYGHDIYAVNSLI-------------------------------NSYAVTGNFKHAH 165
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNK 250
LFD + D VSWN +I GY K GEM+ A LF ++P K + +SW MISGYV GMNK
Sbjct: 166 LLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNK 225
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+AL++F EM++ PD+V++ S L+AC+ LG LE GK +H + + VL L
Sbjct: 226 EALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVL-CCVL 284
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMYAKCG +E A+ VF M+ + V W+ LI G A+HG E+I+ F EMQ + V+P
Sbjct: 285 IDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNA 344
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
ITF VL ACS+ G VEEGK F + +YN++P I HYG
Sbjct: 345 ITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQ 404
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+H ++ELG + L+ M + G YV ++NI+A +W++
Sbjct: 405 KMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDK 464
Query: 452 VEKVRKLMDDSDIKKQPGCSLI 473
+ R+LM + + K PGCS I
Sbjct: 465 AAETRRLMREQGVVKVPGCSAI 486
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 187/580 (32%), Positives = 291/580 (50%), Gaps = 113/580 (19%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
+S R+ K + T K++ A + ++D + ++I S S+ ++ AH +F +I
Sbjct: 19 KSGRVSKNSISTDTSKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTN-LHKAHLVFNQIE 77
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
P ++N +IRG +QS +P++A+ +YT+M I N T F+ KAC R+ G
Sbjct: 78 CPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRK 137
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H +K GFE FV N+LI+ +A CG L A +FDG D+V+W++L GY++ +
Sbjct: 138 IHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNK 197
Query: 187 LSMARSLFDEMPVRDLVS-----------------W----------------------NV 207
LFD M ++ + W N
Sbjct: 198 YKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNT 257
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNA----------------------------- 238
+I Y ++ E A +F+ + +R++VSWNA
Sbjct: 258 LIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISW 317
Query: 239 --MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
MI+GY A+++F+EM + +PD VT+ S+L+ACA LG L+VG VH +
Sbjct: 318 TSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYI-- 375
Query: 297 MTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
GV A + GN+LIDMY KCG +E+A+EVF M+D+D +W+++I GLA +GFA ++
Sbjct: 376 RRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSAL 435
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
+F +M R V+PT TFVG+L+AC+HAG V +G +YF+ M + + P ++HYG
Sbjct: 436 DLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDL 495
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
+HG+V L +A KRLL + +SG+Y
Sbjct: 496 LSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNY 555
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
VLLSN YA W+ K+R+LM+DSD++K G S IE D
Sbjct: 556 VLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVD 595
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 178/533 (33%), Positives = 259/533 (48%), Gaps = 110/533 (20%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
+ YA +F I EP+ ++NT+ RG A S +P+ A+ LY M + PN +TF F+LK
Sbjct: 12 GLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLK 71
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH----------------------- 150
+C +L G +HG ++K G+E + +V SLI +
Sbjct: 72 SCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVS 131
Query: 151 --------ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV--- 199
A+ G + +A +FD DVV+W+++ +GY G A LF EM
Sbjct: 132 YTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNV 191
Query: 200 -----------------------RDLVSW-------------NVMITGYAKQGEMEKANE 223
R + SW N +I Y+K GEME A
Sbjct: 192 RPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACG 251
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
LF + +DV+SWN +I GY + K+AL +F+EM GE P+DVTMLS+L ACA LG
Sbjct: 252 LFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGA 311
Query: 284 LEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+++G+ +H + GV +LIDMY+KCG IE A +VF M + + W+ +I
Sbjct: 312 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMI 371
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G A HG A + +F M++ +++P +ITFVG+L ACSHAG ++ G+ F+ M Y I
Sbjct: 372 FGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKI 431
Query: 403 EPNIRHYG---------------------------------------VHGDVELGRLANK 423
P + HYG +HG+VELG +
Sbjct: 432 TPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQ 491
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
L + + G YVLLSNIYA+ G WN V ++R L++D +KK PGCS IE D
Sbjct: 492 NLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEID 544
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/431 (22%), Positives = 177/431 (41%), Gaps = 58/431 (13%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
+Q+ + + +GF S+ + LI YS G + A +F+ ++ D +N +I G
Sbjct: 215 RQVHSWIADHGFGSNLKIVNALIDFYSKC----GEMETACGLFLGLSYKDVISWNILIGG 270
Query: 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY--GFE 137
+A+ L+ +M + PN T +L AC L ++G +H I K G
Sbjct: 271 YTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVT 330
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+R SLI ++ CGD+ A +F+ + AW+++ G+A G + A +F M
Sbjct: 331 NASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRM 390
Query: 198 PVRDL----VSWNVMITGYAKQGEMEKANELFNEV-------PKRDVVSWNAMISGYVLC 246
++ +++ +++ + G ++ +F + PK + + MI
Sbjct: 391 RKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLE--HYGCMIDLLGHS 448
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL--LDMTSGVAKV 304
G+ K+A EM M PD V SLL AC G++E+G+K L ++ + + V
Sbjct: 449 GLFKEAEEMISTMTM---EPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYV 505
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDV------------STWSTLIGGLAFHGFAE 352
L L ++YA G + + D+ + S I G FH
Sbjct: 506 L----LSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNR 561
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH 412
E M EM+ V AG V + + + M +E+ E +RH+
Sbjct: 562 EIYGMLEEME---------------VLLQEAGFVPDTSEVLQEMEEEFK-EGALRHHSEK 605
Query: 413 GDVELGRLANK 423
+ G ++ K
Sbjct: 606 LAIAFGLISTK 616
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 185/545 (33%), Positives = 270/545 (49%), Gaps = 83/545 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPG--AINYAHKMFVKITEPD 69
K C NLR +QI A + +G D +++ + + V G A +Y + T
Sbjct: 13 KDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQ---GNTRLG 69
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+F +N++I G + P AV +Y +M + P+ FTF +LKAC+ G VHG
Sbjct: 70 SFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHG 129
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+VK G + +V+NSLI + CGD + A +FD DVV+W+SL +G+ + G
Sbjct: 130 VVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDE 189
Query: 190 ARSLFDEMPVR-----------------------------------DLVSWNVMITGYAK 214
A S+F M V +LV N M+ Y K
Sbjct: 190 AISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAMLDMYVK 249
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
G +A +F+E+P RD+VSW MI+G V KQ+LE+F MR++G PD + + S+
Sbjct: 250 NGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSV 309
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDR 333
L+ACA LG L+ G VH + G+ +H G A++DMYAKCG IE A+++F M R
Sbjct: 310 LSACASLGTLDFGTWVHEYI--NQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQR 367
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
+ TW+ L+ GLA HG E++ +F M V+P EITF+ +L AC H G V+EG+KYF
Sbjct: 368 NTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYF 427
Query: 394 KLMRDEYNIEPNIRHYGVH---------------------------------------GD 414
M YN+ P + HYG G+
Sbjct: 428 DNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGN 487
Query: 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+EL +L + D+SG +VLLSNI A W+ V ++R+LM D ++K PG S+IE
Sbjct: 488 IELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIE 547
Query: 475 ADDKA 479
D KA
Sbjct: 548 VDGKA 552
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 176/510 (34%), Positives = 257/510 (50%), Gaps = 72/510 (14%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMF 62
N + + ++C+ LKQI A + G DS A+ + + + S + YA +F
Sbjct: 13 NLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVF 72
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
PDTF++N +IRG + S P ++ LY +M S N +TF +LKAC+ L
Sbjct: 73 DGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFE 132
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
+H +I K G+E DV A +SL YA
Sbjct: 133 ETTQIHAQITKLGYE-------------------------------NDVYAVNSLINSYA 161
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
G +A LFD +P D VSWN +I GY K G+M+ A LF ++ +++ +SW MISG
Sbjct: 162 VTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISG 221
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
YV MNK+AL++F EM++ PD+V++ + L+ACA LG LE GK +H L +
Sbjct: 222 YVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMD 281
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
VL G LIDMYAKCG +E A+EVF ++ + V W+ LI G A+HG E+I+ F EMQ
Sbjct: 282 SVL-GCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ 340
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------ 410
++ ++P ITF VL ACS+ G VEEGK F M +YN++P I HYG
Sbjct: 341 KMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLL 400
Query: 411 ---------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
+H ++ELG + L+ + G YV +NI+
Sbjct: 401 DEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIH 460
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
A +W++ + R+LM + + K PGCS I
Sbjct: 461 AMDKKWDKAAETRRLMKEQGVAKVPGCSTI 490
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 177/533 (33%), Positives = 263/533 (49%), Gaps = 110/533 (20%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
+ YA +F I EP+ +NT+IRG A S +P+ A+ LY M + PN +TF F+ K
Sbjct: 27 GLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFK 86
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCG------------------- 154
+C + G +H +I+KYG + V SLI +A G
Sbjct: 87 SCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146
Query: 155 ------------DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV--- 199
+++ A +FD DVV+W+++ +GYA G A LF+EM
Sbjct: 147 YTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV 206
Query: 200 -----------------------RDLVSW-------------NVMITGYAKQGEMEKANE 223
R + SW N +I Y+K GEME+A+
Sbjct: 207 KPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHG 266
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
LF + +DV+SWN +I GY +K+AL +F+EM +GE P+DVTMLS+L ACA LG
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326
Query: 284 LEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+++G+ +H + G+ +LIDMYAKCG+IE A +VF + ++ +S+ + +I
Sbjct: 327 IDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMI 386
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G A HG A+ + + M++ + P +ITFVG+L ACSHAG + G+K FK M +Y I
Sbjct: 387 FGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRI 446
Query: 403 EPNIRHYG---------------------------------------VHGDVELGRLANK 423
EP + HYG +H ++ELG L +
Sbjct: 447 EPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQ 506
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+L+ + G YVLLSNIYA+ W+ V +VR L++D +KK PGCS IE D
Sbjct: 507 KLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEID 559
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 177/558 (31%), Positives = 289/558 (51%), Gaps = 80/558 (14%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KC NL +KQ+ A + + D +LI + S+ N A ++F ++ EP+ +
Sbjct: 28 KCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLC--RQTNLAVRVFNQVQEPNVHLC 85
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
N++IR AQ+ P A F++++M++ + + FT+ F+LKAC+ + + +H I K
Sbjct: 86 NSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEK 145
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNT--ASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
G + +V N+LI ++ CG L A LF+ ++ D V+W+S+ G + GEL AR
Sbjct: 146 LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDAR 205
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM------------ 239
LFDEMP RDL+SWN M+ GYA+ EM KA ELF ++P+R+ VSW+ M
Sbjct: 206 RLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEM 265
Query: 240 ---------------------ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
I+GY G+ K+A + ++M + G + D ++S+L AC
Sbjct: 266 ARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAAC 325
Query: 279 ADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
+ G L +G ++H L G A VL NAL+DMYAKCG++++A +VF + +D+ +
Sbjct: 326 TESGLLSLGMRIHSILKRSNLGSNAYVL--NALLDMYAKCGNLKKAFDVFNDIPKKDLVS 383
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+T++ GL HG +E+I +F M+R +RP ++TF+ VL +C+HAG ++EG YF M
Sbjct: 384 WNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSME 443
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
Y++ P + HYG +H +V++
Sbjct: 444 KVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIA 503
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ L+ + + G+Y LLSNIYA+ +W V +R M ++K G S +E +D
Sbjct: 504 KEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDG 563
Query: 479 AFLQYLFNLKPKPNSGNL 496
+F+ K P S +
Sbjct: 564 IHEFTVFD-KSHPKSDQI 580
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 185/538 (34%), Positives = 267/538 (49%), Gaps = 116/538 (21%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
+ YA +F I EP+ ++N + RG A S +P+ A+ LY M + PN FTF F+LK
Sbjct: 24 GLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLK 83
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA------ 167
+C + G +HG ++K GF+ + +V SLI +A G L A +FD +
Sbjct: 84 SCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVS 143
Query: 168 ------------------KM-------DVVAWSSLTAGYARRGELSMARSLFDEMPV--- 199
KM DVV+W+++ +GYA G A LF EM
Sbjct: 144 YTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNV 203
Query: 200 -----------------------RDLVSW-------------NVMITGYAKQGEMEKANE 223
R + SW N +I Y+K GE+E A E
Sbjct: 204 KPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACE 263
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
L + +DV+SWN +I GY + K+AL +F+EM GE P+DVTMLS+L ACA LG
Sbjct: 264 LLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 323
Query: 284 LEVGKKVHCTLLDMTSGV----AKVLHGNALIDMYAKCGSIERAIEVF-LGMRDRDVSTW 338
+++G+ +H + GV A L +LIDMYAKCG I+ A +V +R +STW
Sbjct: 324 IDIGRWIHVYIDKKLKGVVVTNASSLR-TSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTW 382
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+ +I G A HG A + +F M++ + P +ITFVG+L ACSH+G ++ G+ F+ MR
Sbjct: 383 NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQ 442
Query: 399 EYNIEPNIRHYG---------------------------------------VHGDVELGR 419
+YNI P + HYG +HG++ELG
Sbjct: 443 DYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGE 502
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ-PGCSLIEAD 476
K+L+ + + G YVLLSNIYA+ G+WN V K+R L++D +KK+ PGCS IE D
Sbjct: 503 SFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEID 560
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 170/520 (32%), Positives = 269/520 (51%), Gaps = 72/520 (13%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
CT++ +KQ+ A + G L +L+ + + + Y +F ++ P+ F++
Sbjct: 49 CTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWT 108
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK-IVK 133
+IRG A +++V LY M + I P FTF+ +LKAC+ L N+G VH + I+
Sbjct: 109 ALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILI 168
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF + +V N+LI + CG L +
Sbjct: 169 GGFGSDLYVGNTLIDMYVKCGCLGCG-------------------------------HRV 197
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FDEM RD++SW +I YAK G ME A+ELF+ +P +D+V+W AM++GY ++AL
Sbjct: 198 FDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREAL 257
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG-VAKVLHGNALID 312
E+FE M++ G + D+VT++ +++ACA LG + V G + V+ G+ALID
Sbjct: 258 EVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALID 317
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCGS+E A +VF M +R+V ++S++I G A HG A ++ +F EM + +++P +T
Sbjct: 318 MYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVT 377
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+GVL ACSHAG VE+G++ F +M + + + P+ HY
Sbjct: 378 FIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMM 437
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+HG+ ++ ++A L + + G+Y+LLSNIYAS G W+ V
Sbjct: 438 PMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVS 497
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
KVRKLM +KK PGCS +E ++ P S
Sbjct: 498 KVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKS 537
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 171/512 (33%), Positives = 270/512 (52%), Gaps = 77/512 (15%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT-FMYNTI 76
++ K+ + ING +LR +I ++ G I+YA + ++ + P T F++NT
Sbjct: 1 MKQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTT 60
Query: 77 IRGSAQSQNP---LDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
IRG ++++ P L +V L+ +M S+ PN FTF+F+ + C+ + ++G HG ++K
Sbjct: 61 IRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIK 120
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
FE + FVRNS+I F++ CG LN A +FD +++DVV+W+S+ G R G + A SL
Sbjct: 121 NSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSL 180
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
F +M R+ +SWN+MI+GYA+ G+ K+AL
Sbjct: 181 FSKMTERNDISWNMMISGYAQNGQ-------------------------------PKEAL 209
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
+F EM+ + + P+ ++S+L+AC+ LG L+ G VHC + V +L ALIDM
Sbjct: 210 ALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSA-ALIDM 268
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YAKCGSI+ A++ F R RDVS ++ I GLA +G +EE++ +F +M+ + P +++
Sbjct: 269 YAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSY 328
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------- 410
+ VL ACSHAG VE+G YF M D + I P + HY
Sbjct: 329 IAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMP 388
Query: 411 ----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
V+G+ E+G+ L+ ++ G Y+LLSNIYA + E+
Sbjct: 389 IKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQ 448
Query: 455 VRKLMDDSDIKKQPGCSLIEADDKAFLQYLFN 486
VRK M + + PGCSLIE F+ F+
Sbjct: 449 VRKTMRRRKVDRVPGCSLIEV--AGFVHEFFS 478
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 172/466 (36%), Positives = 247/466 (53%), Gaps = 77/466 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++Y+ +F + P F + II G A A+ Y QM ++PN FTFS +L
Sbjct: 23 GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL 82
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
K C G +H + VK GF+ + +VR L +DV
Sbjct: 83 KLCPI----EPGKALHSQAVKLGFDSDLYVRTGL----------------------LDV- 115
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
YAR G++ A+ LFD MP + LVS M+T YAK GE++ A LF+ + +RD
Sbjct: 116 --------YARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERD 167
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
V WN MI GY GM +AL +F M +P++VT+LS+L+AC LG LE G+ VH
Sbjct: 168 GVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHS 227
Query: 293 TLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ + +G+ +H G AL+DMY+KCGS+E A VF + D+DV W+++I G A GF+
Sbjct: 228 YIEN--NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFS 285
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
+E++ +F+ M R+ + PT ITF+G+L AC H+G V EG F M+DEY IEP I HYG
Sbjct: 286 QEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGC 345
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+HG + LG + L++
Sbjct: 346 MVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLAN 405
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
SG Y+LLSNIYA+ G W+ V ++R +M DS +KK+PGCS IE ++K
Sbjct: 406 SGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNK 451
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 34/209 (16%)
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
YA G ++ + LF V W A+I G+ L G+++QAL + +M + G P+ T
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 272 LSLLTACADLGDLEVGKKVHCT---------------LLDMTSGVAKVLHGNALIDM--- 313
S+L C +E GK +H LLD+ + V+ L D
Sbjct: 79 SSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134
Query: 314 ------------YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
YAK G ++ A +F GM +RD W+ +I G +G E++ +FR M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ K +P E+T + VL AC G +E G+
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLGALESGR 223
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/479 (35%), Positives = 257/479 (53%), Gaps = 75/479 (15%)
Query: 41 RELIYSGSVVI----PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM 96
R +I S S+++ G + A K+F ++ E D ++ +I Q++ +A+ + M
Sbjct: 173 RSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGM 232
Query: 97 EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156
K + ++ L AC LL NMG +H +K G E ++N+LIY ++ CGD+
Sbjct: 233 HKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDI 292
Query: 157 NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG 216
+AR LFDE + DL+SWN MI+GY K
Sbjct: 293 -------------------------------MVARKLFDEAYLLDLISWNSMISGYLKCN 321
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
++ A +F+ +P++DVVSW++MISGY + + L +F+EM+ G +PD+ T++S+++
Sbjct: 322 LVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVIS 381
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
ACA L LE GK VH + V+ G LIDMY KCG +E A+EVF GM ++ +S
Sbjct: 382 ACARLAALEQGKWVH-AYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIS 440
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
TW+ LI GLA +G E S+ MF M++ V P EITF+GVL AC H G V+EG+ +F M
Sbjct: 441 TWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSM 500
Query: 397 RDEYNIEPNIRHYGV---------------------------------------HGDVEL 417
++ I+PN++HYG HGD E+
Sbjct: 501 IHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 560
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
GR ++L+ ++ D G +VLLSNIYAS+G+W+ V ++R +M + K PGCS+IEA+
Sbjct: 561 GRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEAN 619
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 207/393 (52%), Gaps = 34/393 (8%)
Query: 30 INGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDA 89
+ GF ++ A LI + I+Y ++F I + FM+N +IR Q+ +P A
Sbjct: 3 LTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFA 62
Query: 90 VFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF 149
LY M + + +T+ +++AC+ VH ++K GF+ + +VRN+LI
Sbjct: 63 FTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINC 122
Query: 150 HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMI 209
+ C ++ A +F+ + +D V+W+S+ AGY G + A+ ++ +MP R +++ N MI
Sbjct: 123 FSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMI 182
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
+ +G + +A +LF+E+ ++D+V+W+A+I+ + M ++A+ F M +G D+V
Sbjct: 183 VLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEV 242
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSI-------- 320
+S L+ACA+L + +GK +H L + G ++ NALI MY+KCG I
Sbjct: 243 VAVSALSACANLLVVNMGKLIHS--LSLKIGTESYINLQNALIYMYSKCGDIMVARKLFD 300
Query: 321 -----------------------ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
+ A +F M ++DV +WS++I G A + +E++A+
Sbjct: 301 EAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLAL 360
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
F+EMQ +P E T V V+ AC+ +E+GK
Sbjct: 361 FQEMQMSGFKPDETTLVSVISACARLAALEQGK 393
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 188/508 (37%), Positives = 277/508 (54%), Gaps = 65/508 (12%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIY--SGSVVIPGAINYAHKMFVKITEPDTFM 72
C +R L QI A+ +G D+ A E++ + S + ++YAHK+F ++ + + F
Sbjct: 26 CRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFS 85
Query: 73 YNTIIRGSAQSQN--PLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+NTIIRG ++S L A+ L+ +M I+PN+FTF VLKAC + G +HG
Sbjct: 86 WNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHG 145
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+KYGF + FV ++L+ + CG + A VLF Y E M
Sbjct: 146 LALKYGFGGDEFVMSNLVRMYVICGLMKDACVLF-----------------YKNIIEREM 188
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
+ ++V WNVMI GY + G+ + A LF+++ +R VVSWN MISGY G
Sbjct: 189 VMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFF 248
Query: 250 KQALEMFEEMRSVGE--RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
K A+E+F EM+ GE RP+ VT++S+L A + LG LE+G+ +H D + VL G
Sbjct: 249 KDAVEVFREMKK-GEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVL-G 306
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
+ALIDMY+KCG IE+AI VF + +V TWS +I G A HG A ++I F +M++ VR
Sbjct: 307 SALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 366
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P+++ ++ +L ACSHAG VEEG++YF M +EP I HYG
Sbjct: 367 PSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEE 426
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+H +VE+G+ L++M +SG YV LSN+YAS+G
Sbjct: 427 FILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGN 486
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
W+ V ++R M + DI+K PGCS I+ D
Sbjct: 487 WSEVSEMRLRMKEMDIRKDPGCSWIDID 514
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/479 (35%), Positives = 257/479 (53%), Gaps = 75/479 (15%)
Query: 41 RELIYSGSVVI----PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM 96
R +I S S+++ G + A K+F ++ E D ++ +I Q++ +A+ + M
Sbjct: 308 RSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGM 367
Query: 97 EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156
K + ++ L AC LL NMG +H +K G E ++N+LIY ++ CGD+
Sbjct: 368 HKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDI 427
Query: 157 NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG 216
+AR LFDE + DL+SWN MI+GY K
Sbjct: 428 -------------------------------MVARKLFDEAYLLDLISWNSMISGYLKCN 456
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
++ A +F+ +P++DVVSW++MISGY + + L +F+EM+ G +PD+ T++S+++
Sbjct: 457 LVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVIS 516
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
ACA L LE GK VH + V+ G LIDMY KCG +E A+EVF GM ++ +S
Sbjct: 517 ACARLAALEQGKWVH-AYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIS 575
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
TW+ LI GLA +G E S+ MF M++ V P EITF+GVL AC H G V+EG+ +F M
Sbjct: 576 TWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSM 635
Query: 397 RDEYNIEPNIRHYGV---------------------------------------HGDVEL 417
++ I+PN++HYG HGD E+
Sbjct: 636 IHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEM 695
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
GR ++L+ ++ D G +VLLSNIYAS+G+W+ V ++R +M + K PGCS+IEA+
Sbjct: 696 GRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEAN 754
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 184/345 (53%), Gaps = 34/345 (9%)
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
R Q+ +P A LY M + + +T+ +++AC+ VH ++K GF+
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ +VRN+LI + C ++ A +F+ + +D V+W+S+ AGY G + A+ ++ +M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
P R +++ N MI + +G + +A +LF+E+ ++D+V+W+A+I+ + M ++A+ F
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAK 316
M +G D+V +S L+ACA+L + +GK +H L + G ++ NALI MY+K
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHS--LSLKIGTESYINLQNALIYMYSK 423
Query: 317 CGSI-------------------------------ERAIEVFLGMRDRDVSTWSTLIGGL 345
CG I + A +F M ++DV +WS++I G
Sbjct: 424 CGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGY 483
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
A + +E++A+F+EMQ +P E T V V+ AC+ +E+GK
Sbjct: 484 AQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGK 528
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 182/542 (33%), Positives = 279/542 (51%), Gaps = 83/542 (15%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP--DTFMYNTIIR 78
L Q+ A + +G + S+ + + P + YA +F P T YN ++R
Sbjct: 32 LPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMR 91
Query: 79 GSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
+ +P DA+ L+ +M + ++ T + LK+C+R+ ++G V VK G
Sbjct: 92 AFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGL 151
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE----LSMARS 192
+RFV +SLI+ +A+CGD+ A ++FD + VV W+++ A Y + G+ + M +
Sbjct: 152 VADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKG 211
Query: 193 L------FDEMPVRDLVS------------W-----------------NVMITGYAKQGE 217
+ FDE+ + +V+ W ++ YAK GE
Sbjct: 212 MLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGE 271
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
+ KA LF+ + RDVV+W+AMISGY ++AL +F EM+ P+DVTM+S+L+A
Sbjct: 272 IGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSA 331
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
CA LG LE GK VH + + +L G AL+D YAKCG I+ A+E F M ++ T
Sbjct: 332 CAVLGALETGKWVHSYVRRKRLSLTTIL-GTALVDFYAKCGCIDDAVEAFESMPVKNSWT 390
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+ LI G+A +G E++ +F M+ + PT++TF+GVL+ACSH+ VEEG+++F M
Sbjct: 391 WTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMA 450
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
+Y I+P + HYG VH +V +G
Sbjct: 451 RDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIG 510
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
A K+++++ SGDYVLLSNIYAS G+W VRK M D I+K PGCSLIE D
Sbjct: 511 EEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGV 570
Query: 479 AF 480
F
Sbjct: 571 VF 572
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/400 (24%), Positives = 176/400 (44%), Gaps = 50/400 (12%)
Query: 3 TNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAH 59
++H ++ K C+ + L + +QA G +D L LI+ + G + A
Sbjct: 118 ADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASC--GDVAAAR 175
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
+F E M+N I+ ++ + ++ V ++ M + + ++ T V+ AC R+
Sbjct: 176 LVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIG 235
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
+G V G + + G N + +L+ +A CG++ A LFDG DVVAWS++ +
Sbjct: 236 DAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMIS 295
Query: 180 GYARRGELSMARSLFDEMPVR-------DLVS---------------W------------ 205
GY + + A LF EM + +VS W
Sbjct: 296 GYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSL 355
Query: 206 -----NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
++ YAK G ++ A E F +P ++ +W A+I G G ++ALE+F MR
Sbjct: 356 TTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMR 415
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGS 319
G P DVT + +L AC+ +E G++ H + G+ +V H ++D+ + G
Sbjct: 416 EAGIEPTDVTFIGVLMACSHSCLVEEGRR-HFDSMARDYGIKPRVEHYGCMVDLLGRAGL 474
Query: 320 IERAIEVFLGMR-DRDVSTWSTLIGGLAFH---GFAEESI 355
++ A + M + + W L+ A H G EE++
Sbjct: 475 VDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEAL 514
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/469 (35%), Positives = 251/469 (53%), Gaps = 76/469 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-----IKPNKFT 107
G YA+ +F ++ +P+ F+YN +IR ++ + A+ ++ QM S P+KFT
Sbjct: 34 GETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXFPDKFT 93
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
F FV+K C L+ N+G VHG K+G + N + NSL+ + C L+ A
Sbjct: 94 FPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDA-------- 145
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
+F+EM RD VSWN +I+G+ + G+M +A +F E
Sbjct: 146 -----------------------HRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEE 182
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+ + + SW A++SGY G + ALE F M+ V D+++++S+L ACA LG LE+G
Sbjct: 183 LQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGALELG 242
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
K +H D + + NALI++YAK GS++ +F M +RDV +WST+I GLA
Sbjct: 243 KWIH-IYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLAN 301
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
HG A E+I +F+EMQ+ KV P ITFVG+L AC+HAG + EG YF+ M + NIEP +
Sbjct: 302 HGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVE 361
Query: 408 HYGV---------------------------------------HGDVELGRLANKRLLNM 428
HYG HG++E+ +A + LL +
Sbjct: 362 HYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIVAIAMEHLLEL 421
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
D++G+Y+ LSN+YA G+W+ V ++RKLM + K PGCS IE D+
Sbjct: 422 EPDDTGNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGCSSIEVDN 470
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 182/578 (31%), Positives = 282/578 (48%), Gaps = 113/578 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L K C +++ LKQIQ + GF+ L + + + G ++YA ++F I P
Sbjct: 38 LLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGL 97
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F+YN +I+ ++ + AV L+ Q+ + + P+ FT+ FV KA L G V+G
Sbjct: 98 FIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGF 157
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+VK G EF+ +V NSL+ +A G + +F+ + DVV+W+ L +GY + A
Sbjct: 158 VVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDA 217
Query: 191 RSLFDEMP----------------------------------VRDLVSW-----NVMITG 211
+F M VR+ + + N ++
Sbjct: 218 VDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGNALVDM 277
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE-------------- 257
Y K G + A E+FN++P + V+ W +M+SGYV CG +A E+FE
Sbjct: 278 YCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMI 337
Query: 258 -----------------EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
EM+ PD T+++LLT CA LG LE GK +H +D
Sbjct: 338 NGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIH-GYIDENKI 396
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ + G ALI+MYAKCG IE+++E+F G++++D ++W+++I GLA +G +++ +F E
Sbjct: 397 MIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAE 456
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M + V+P +ITF+GVL ACSH G VEEG+K+F+ M Y IEP + HYG
Sbjct: 457 MVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAG 516
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
HG+VE+G KRL+ + +S + L
Sbjct: 517 QLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTL 576
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
L+NIYAS W V KVR+ M D +KK PGCS +E +
Sbjct: 577 LANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVN 614
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 186/512 (36%), Positives = 266/512 (51%), Gaps = 81/512 (15%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
+C R LKQI A G A EL+ ++ I YA K F +I P+ F +
Sbjct: 24 RCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSW 83
Query: 74 NTIIRGSAQSQ-------NPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
NTIIR A S N L+A+ ++ M ++PNKFTF VLKAC +L G
Sbjct: 84 NTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGK 143
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF-DGDAKMDVVAWSSLTAGYARR 184
+HG +VK G + FVR++L+ + CG + A VLF + +VV W+ + GY R
Sbjct: 144 QLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRM 203
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G+L +R LFD MP + +VSWNVMI+G A+ G ++A E+F+++ DV
Sbjct: 204 GDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDV----------- 252
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
P+ VT++S+L A + LG +E+GK VH + V
Sbjct: 253 --------------------PPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDV 292
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
L G+ALIDMY+KCGSI++A++VF G+R+ ++ TWS +IGGLA HG A +++ F MQ+
Sbjct: 293 L-GSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQ 351
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
V P+++ ++GVL ACSHAG VEEG+ + M + + P I HYG
Sbjct: 352 AGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLE 411
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
+HG++E+G K L+ +SG YV LSN++A
Sbjct: 412 EAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFA 471
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
S G W V KVR M + DI+K PGCS IE D
Sbjct: 472 SEGNWEGVVKVRLKMKELDIRKDPGCSWIELD 503
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 172/520 (33%), Positives = 264/520 (50%), Gaps = 78/520 (15%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGA-------INY 57
+H L + C++ LK I + SD L+ V + Y
Sbjct: 12 KHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGY 71
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A+ +F +I P+ F++N +IR + P A YTQM K I P+ TF F++KA T
Sbjct: 72 AYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTE 131
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+ +G H +IV++GF+ + +V NSL++ +ANCG + A +F DVV+W+S+
Sbjct: 132 MECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSM 191
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
AGY + G + AR +FDEMP R+L +W++MI GYAK EK
Sbjct: 192 VAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEK----------------- 234
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
A+++FE M+ G ++ M+S++++CA LG LE G++ H ++
Sbjct: 235 --------------AIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKS 280
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
V +L G AL+DMY +CG IE+AI VF + D+D +WS++I GLA HG A ++I
Sbjct: 281 HMTVNLIL-GTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHY 339
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------- 410
F +M RL P +IT VL ACSH G V++G + ++ M+ +Y IEP + HYG
Sbjct: 340 FSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLG 399
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
++ + E+ L+ ++ + SG YVL
Sbjct: 400 RAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVL 459
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
LSNIYA G+W ++E +R +M + +KK PG SLIE D K
Sbjct: 460 LSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGK 499
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 174/530 (32%), Positives = 269/530 (50%), Gaps = 75/530 (14%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
+L + CTN++ QI +T+ G A I + ++++ ++ I EPD
Sbjct: 63 KLEQSCTNIKQFNQIHTQLTVLGLFQHPFAASRYIKKLCACL-NSVSHCVSLYNHIEEPD 121
Query: 70 TFMYNTIIRGSAQSQNPLDAV-FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
FM NTI+R +P A+ F Y +M + PN +TF V K C + G VH
Sbjct: 122 AFMCNTIMRSFVNVNDPFGALRFYYEKMIAKWVLPNHYTFPLVAKVCADIGSLREGQKVH 181
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+VK+GFE + FVRNS I F++ CG + A ++FD +D+V+W+S+ GY + GEL
Sbjct: 182 ALVVKFGFELDLFVRNSFIRFYSVCGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELG 241
Query: 189 MARSLFDEM-------------------------------PVRDLVSWNVMITGYAKQGE 217
+AR +FDEM P RD+VSWN MI G+A+ +
Sbjct: 242 LAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFARIKD 301
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
+ A + F+E+P R+VVSWN M++ Y+ C L F+ M PD+ +++S+LTA
Sbjct: 302 VSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTA 361
Query: 278 CADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
CA+L L+ GK VH + D +G+ +L AL+ MYAKCG+++ A EVF M ++ V
Sbjct: 362 CAELKMLDQGKWVHSYMKD--NGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVV 419
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+W+++I G HG ++++ MFREM++ P + TF+ VL ACSH+G V G YF LM
Sbjct: 420 SWNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACSHSGMVWNGWWYFDLM 479
Query: 397 RDEYNIEPNIRHYG---------------------VHGDV------------------EL 417
+Y I+P HYG H +V E
Sbjct: 480 HRKYRIQPKPEHYGCLVDLLGQAGLKEPSEDLTRKTHTEVEPTLWGDLLSACRAHCISEP 539
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
G + K+L+ + + Y+LLSN Y + G W+ VE +R + + + +
Sbjct: 540 GEILAKQLIKLFPNHVVPYLLLSNTYVAEGRWDDVENLRMTLKNKTLNSK 589
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 184/540 (34%), Positives = 273/540 (50%), Gaps = 82/540 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+KCT + LKQI A + D + +++ ++ G++ YA +F +I P TF
Sbjct: 48 EKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFT 107
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
N+IIRG P A+ Y M + P++FTF + K+C L G +H
Sbjct: 108 CNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHST 164
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K GF + +++N+L+ ++NCG L +A +FD VV+W+++ YA+ A
Sbjct: 165 KLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIK 224
Query: 193 LFDEMPV--------------------RDL--------------VSWNVMITG-----YA 213
LF M + RDL + ++ ++T Y
Sbjct: 225 LFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYC 284
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
K G A +LFN++P++++ WN MI+G+V ++AL +F EM+ G + D VTM S
Sbjct: 285 KCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMAS 344
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
LL AC LG LE+GK +H ++ V G AL+DMYAKCGSIE A+ VF M ++
Sbjct: 345 LLIACTHLGALELGKWLH-VYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEK 403
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
DV TW+ LI GLA G +++ +F EMQ +V+P ITFVGVL ACSHAG V EG YF
Sbjct: 404 DVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYF 463
Query: 394 KLMRDEYNIEPNIRHYG---------------------------------------VHGD 414
M ++Y I+P+I HYG +HG+
Sbjct: 464 NSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGN 523
Query: 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ + A ++L+ + G YVLLSNIY+S W +K+R+LM + +IKK PGCS IE
Sbjct: 524 LVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIE 583
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 188/572 (32%), Positives = 278/572 (48%), Gaps = 111/572 (19%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT 75
T+L LKQ+ A + + + +S L +L+ S S + +++YA +F I +P+T + N
Sbjct: 34 TSLTHLKQVHAQILRSKLDRSTSLLVKLVIS-SCALSSSLDYALSVFNLIPKPETHLCNR 92
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+R ++S+ P + +Y +M + ++F+F +LKA +R+ G +HG K G
Sbjct: 93 FLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLG 152
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
F+ + FV+ L+ +A CG + A ++FD DVV WS + GY + G + A LF+
Sbjct: 153 FDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFE 212
Query: 196 EMP-----------------------------VRDLVSWN----------VMITGYAKQG 216
EM + D + N ++T YA G
Sbjct: 213 EMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCG 272
Query: 217 EM-------------------------------EKANELFNEVPKRDVVSWNAMISGYVL 245
M E A +FN++ K+D+V W+AMISGY
Sbjct: 273 SMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAE 332
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
++AL +F EM+S+G +PD VTMLS++TACA LG L+ K +H +D +
Sbjct: 333 SDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIH-LFVDKNGFGGALP 391
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
NALI+MYAKCGS+ERA +F M ++V +W+ +I A HG A ++ F +M+
Sbjct: 392 INNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDEN 451
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
+ P ITFVGVL ACSHAG VEEG+K F M +E+NI P HYG
Sbjct: 452 IEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREA 511
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
VHG++ELG A KRLL + D G +V LSNIYA
Sbjct: 512 LELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKA 571
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
W V +VRKLM I K+ GCS E +++
Sbjct: 572 RRWEDVGQVRKLMKHKGISKERGCSRFELNNE 603
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 188/559 (33%), Positives = 279/559 (49%), Gaps = 81/559 (14%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KCTN +KQI A + + D +LI S S+ ++ A +F ++ +P+ +Y
Sbjct: 31 KCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIASYSLT--NNLSSAVNVFNQVPDPNVHLY 88
Query: 74 NTIIRG---SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT-RLLYRNMGFCVHG 129
N +IR S N L A + +M + + FT+ F+LK C + ++ VH
Sbjct: 89 NYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHA 148
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ K GF ++ FV NSLI + CGD+ A +F G + DVV+W+S+ G + G+L
Sbjct: 149 HVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDG 208
Query: 190 ARSLFDEMPVRDLVSWNV-------------------------------MITGYAKQGEM 218
A +FDEMP RD VSWN M+ GY+K G+M
Sbjct: 209 ALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDM 268
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+ A LF+ P +++V W +ISGY G K+A+ + +EM G R DD +S+L AC
Sbjct: 269 DMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAAC 328
Query: 279 ADLGDLEVGKKVHCTLL-DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVS 336
A+ G L +GKK+H + L KVL N+ IDMYAKCG ++ A VF GM+ ++D+
Sbjct: 329 AESGMLGLGKKMHDSFLRSRFRCSTKVL--NSFIDMYAKCGCVDDAFRVFNGMKTEKDLV 386
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+W+++I G HG E+SI +F M R +P TF+G+L AC+HAG V EG+ YF M
Sbjct: 387 SWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSM 446
Query: 397 RDEYNIEPNIRHYG---------------------------------------VHGDVEL 417
+ Y I P I HYG +H DV+L
Sbjct: 447 QRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMHNDVKL 506
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+K L + + G++ LLSNIYA G+W V KVRK M+D +K G S IE ++
Sbjct: 507 ATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEGGQKPSGVSSIEVEE 566
Query: 478 KAFLQYLFNLKPKPNSGNL 496
+ ++ P SG++
Sbjct: 567 EVH-EFTVRDWSHPKSGDI 584
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 169/520 (32%), Positives = 275/520 (52%), Gaps = 57/520 (10%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S L K CT TL+Q+ A + G + D + + + + + +Y +F ++ P
Sbjct: 29 STLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSL--SNFSYTTSVFNGVSSP 86
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
T ++NT I+G +++ + V L+ +M++ P+KFT+ ++KAC+++ G H
Sbjct: 87 STVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFH 146
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G V+ G + FV SLI + CG++ A +FD + +VV+W+++ AGYA +L
Sbjct: 147 GSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLV 206
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
AR LFDEMP ++ VSWN +I+GY K G++ A ++F+E+P R+VVS+ MI GY G
Sbjct: 207 EARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGD 266
Query: 249 NKQALEMFEE-------------MRSVGE---RPDDVTMLSLLTACADLGDLEVGKKVHC 292
A +FEE R E +PD+ M+SL++AC+ +G LE+ K V
Sbjct: 267 MASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDD 326
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ + V + ALIDM AKCGS++RA ++F M RD+ ++ +++ GL+ HG
Sbjct: 327 YVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGP 386
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+++++F M + P ++ F +L ACS AG V+EG YF+ M+ +Y+I P+ HY
Sbjct: 387 QAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACM 446
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+H D+ELG + +L + +
Sbjct: 447 VDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNA 506
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
G+YVLLSNIYA+ +W V +R M + I+K PGCS I
Sbjct: 507 GNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 546
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 180/557 (32%), Positives = 276/557 (49%), Gaps = 94/557 (16%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAIN-------------Y 57
L C ++R +KQI A +I N+ S I S I + Y
Sbjct: 32 LLSSCKSVREIKQIHA--SIIKANTTRSTTTLPIISLCTKITSLLQQDVHLADSIQNLWY 89
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF-LYTQMEKCSIKPNKFTFSFVLKACT 116
A + + +++N II+ + S N +F LY QM + P+ +T ++LKAC+
Sbjct: 90 ASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACS 149
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
+ +H +K G N FV+N+L+ F+A G + +FD D+++W++
Sbjct: 150 QSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTT 209
Query: 177 LTAGYARRGELSMARSLF-------DEMPV------------------------------ 199
L Y++ G S A + F D M +
Sbjct: 210 LIQAYSKMGYPSEAIAAFFRMNCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDV 269
Query: 200 -RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
D+ N ++ Y K G+ A +LF+ +P +++VSWN+MISG G+ K+AL MF
Sbjct: 270 HSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRR 329
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M+++G +PD VT++ +L +CA+LGDLE+GK VH + +D A NAL+DMYAKCG
Sbjct: 330 MQTMGLKPDSVTLVGVLNSCANLGDLELGKWVH-SYIDKNHMKADGYVANALVDMYAKCG 388
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
SI++A VF M+ +DV +++ +I G A HG A+ ++A+F EM R+ VRP +T VGVL
Sbjct: 389 SIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLS 448
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------- 410
ACSHAG +EEG+++F+ M Y+++P HYG
Sbjct: 449 ACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDA 508
Query: 411 -----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459
+H VELG ++L+ M + G Y+L+SNIY+S W K RK M
Sbjct: 509 SVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAM 568
Query: 460 DDSDIKKQPGCSLIEAD 476
++IKK PGCS IE D
Sbjct: 569 KQNNIKKTPGCSSIEVD 585
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 178/535 (33%), Positives = 265/535 (49%), Gaps = 116/535 (21%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
YA +F I EP+ ++NT++RG A S +P+ A+ LY M + PN +TF F+LK+C
Sbjct: 18 YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA------------------------- 151
+ G +HG ++K G+E + +V SLI +A
Sbjct: 78 KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137
Query: 152 ------NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV------ 199
+ G++ +A +FD DVV+W+++ +GYA G A LF EM
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197
Query: 200 --------------------RDLVSW-------------NVMITGYAKQGEMEKANELFN 226
R + SW N +I Y+K G++E A LF
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+ +DVVSWN +I GY + K+AL +F+EM GE P+DVT++S+L ACA LG +++
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317
Query: 287 GKKVHC----TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
G+ +H L D+T+ + +LIDMYAKCG IE A +VF M + +S+W+ +I
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSL---RTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 374
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G A HG A +F M++ + P +ITFVG+L ACSH+GK++ G+ FK M +Y+I
Sbjct: 375 FGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDI 434
Query: 403 EPNIRHYGV---------------------------------------HGDVELGRLANK 423
P + HYG HG++EL +
Sbjct: 435 TPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFAR 494
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
L+ + + G YVLLSNIYA+ GEW+ V KVR L++ +KK PGCS IE D +
Sbjct: 495 NLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSE 549
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 27/292 (9%)
Query: 15 CTNLRTL---KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPD 69
C R++ +Q+ + + +GF S+ + LI YS G + A +F ++ D
Sbjct: 208 CAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKC----GQVETACGLFEGLSCKD 263
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+NT+I G +A+ L+ +M + PN T +L AC L ++G +H
Sbjct: 264 VVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHV 323
Query: 130 KIVKYGFEFNRF--VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
I K + +R SLI +A CGD+ A +F+ + +W+++ G+A G
Sbjct: 324 YIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRA 383
Query: 188 SMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV-------PKRDVVSW 236
+ LF M D +++ +++ + G+++ +F + PK + +
Sbjct: 384 NAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLE--HY 441
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
MI G+ K+A EM + M PD V SLL AC G+LE+ +
Sbjct: 442 GCMIDLLGHSGLFKEAKEMIKTMPM---EPDGVIWCSLLKACRRHGNLELAE 490
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 180/585 (30%), Positives = 299/585 (51%), Gaps = 117/585 (20%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+ LKQIQAL+ I + +R L+ + I YA ++F +I PD ++ + I
Sbjct: 15 INQLKQIQALIIIKYLSLTPLFIRRLLNAS------FIQYARQVFDQIPHPDQGVHCSFI 68
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
++ +A+ + M + +++ FT + K+C LL ++G VH +++YGF
Sbjct: 69 TAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFH 128
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD--------------------------- 170
+ F +N+LI F+A DL +A ++FDG D
Sbjct: 129 SSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKM 188
Query: 171 ----VVAWSSLTAGYARRGE--------------------------LSMARSLFD-EMPV 199
+V+W+++ + YA+ G+ LS+ L D EM +
Sbjct: 189 RDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGL 248
Query: 200 R------------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
R +++ M+ Y K G ++ +F+ + +RDVV+W+AMI+GY G
Sbjct: 249 RIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNG 308
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+ +ALE+FE M+S +P+DVT++S+L+ACA LG +E G+++ + ++ ++ V
Sbjct: 309 RSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIG-SYVESRGLISNVYVA 367
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
+AL+ MY+KCG+I +A ++F + RD TW+++I GLA +GFAE++IA++ M+ ++V+
Sbjct: 368 SALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVK 427
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P ITFVG++ AC+HAG VE G ++F+ MR ++NI PNI H+
Sbjct: 428 PNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYE 487
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+H +VEL LA K+LL + D SG+YV+LSNIYAS G
Sbjct: 488 FICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGR 547
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
W KVRKLM D ++K S +E +D+ ++L P S
Sbjct: 548 WQEALKVRKLMKDKRVQKAAAYSWVEVEDRVH-KFLVGDTSHPRS 591
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 186/526 (35%), Positives = 276/526 (52%), Gaps = 53/526 (10%)
Query: 4 NRHRSSRLWKKCT---NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
N ++ L +C ++R L +IQA + + S + + + G G + ++
Sbjct: 20 NHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVL 79
Query: 61 MFVK-ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC---SIKPNKFTFSFVLKACT 116
+F ++ P+ F YN +++ +Q N Y + + P+++TF+ VLKAC
Sbjct: 80 IFNHFLSFPNIFAYNALLKAFSQ-HNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACA 138
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI--YFHANCGDLNTASVLFDGDAKMDVVAW 174
L G VH + KYG E N FVRNSL+ YF C + A LFD DVV+W
Sbjct: 139 GLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCI--AQKLFDEMVVRDVVSW 196
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
++L +GY G + AR +FD M ++LVSW+ MI+GYA+ G +E+A +LF +P R+VV
Sbjct: 197 NTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVV 256
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCT 293
SWNAMI+GY A+E+F +M+ G P+DVT++S+L+ACA LG L++GK +H
Sbjct: 257 SWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRF 316
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+ V L GNAL DMYAKCG + A VF M +RDV +WS +I GLA +G+A E
Sbjct: 317 IRRNKIEVGLFL-GNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANE 375
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
+ F EM + P +I+F+G+L AC+HAG V++G +YF +M Y I P I HYG
Sbjct: 376 AFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVV 435
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
++ D E G R+L + + SG
Sbjct: 436 DLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSG 495
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
V L+N+YAS G + R M D+ K PGCS IE ++ +
Sbjct: 496 SLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVY 541
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 174/575 (30%), Positives = 294/575 (51%), Gaps = 112/575 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +C +L+ LK + A + ++G + L +L+ S SV + + YAHK+F +I +P+
Sbjct: 42 LIDQCISLKQLKHVHAQIILHGLATQVLTLGKLV-SSSVQLRD-LRYAHKLFDQIPQPNK 99
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
FM+N +I+G + S +P+ ++ LY +M I PN+FT FVLKAC +G CVH +
Sbjct: 100 FMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQ 159
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
K G + V+N+++ + CG + +A +FD ++ +V+W+S+ GY++ G A
Sbjct: 160 SFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEA 219
Query: 191 RSLFDEMPVRDL-------------------------VSWNVMITG-------------- 211
+F EM L V ++++TG
Sbjct: 220 VLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDM 279
Query: 212 YAKQGEMEKAN-------------------------------ELFNEVPKRDVVSWNAMI 240
YAK G ++ A E FN++P ++VVSWN++I
Sbjct: 280 YAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSII 339
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+V G+ +A+++F M G +D T++++L++C+ +GDL +GK+ H + D
Sbjct: 340 WCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNIT 399
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
++ L NA+IDMYAKCG+++ A++VF GM +++ +W+ +IG LA HG+ +E+I MF +
Sbjct: 400 LSATL-CNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEK 458
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
MQ V P EITF G+L ACSH+G V+ G+ YF++M + I P++ HY
Sbjct: 459 MQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRG 518
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
+G++ +G+ K+LL + + SG YVLLSN
Sbjct: 519 LLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSN 578
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+Y+ W+ ++ + K++D + IKK S IE D
Sbjct: 579 MYSESQRWDDMKNIWKILDQNGIKKCRAISFIEID 613
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 172/556 (30%), Positives = 290/556 (52%), Gaps = 77/556 (13%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KCTNL +KQ+ A + + + D + +LI + S+ + A F ++ P+ +Y
Sbjct: 29 KCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLC--RQMLLATNAFNQVQYPNVHLY 86
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
NT+IR + + P A + M++ + FTF F+LK CT ++ + VH +I K
Sbjct: 87 NTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEK 146
Query: 134 YGFEFNRFVRNSLIYFHANCGD--LNTASVLF-DGDAKMDVVAWSSLTAG---------- 180
+GF + FV NSLI ++ CG ++ A LF A+ DVV+W+S+ +G
Sbjct: 147 FGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEA 206
Query: 181 ---------------------YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
Y + G++ A LFDEMP R++VSW+ M+ GY K G+ME
Sbjct: 207 RKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDME 266
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
A LF+++P +++VSW ++SG+ G+ ++A+ +F++M + D+ T++S+L ACA
Sbjct: 267 MARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACA 326
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
+ G L +G+K+H ++ + + NAL+DMYAKCG + A +VF ++++DV +W+
Sbjct: 327 ESGLLGLGEKIHASIKNNNFKCTTEI-SNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWN 385
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
++ GLA HG +++ +F+ M+ P ++T +GVL AC+HAG +++G +YF M +
Sbjct: 386 AMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERD 445
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y + P + HYG +H VEL R
Sbjct: 446 YTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELARE 505
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
L+ + +SG++ +LSNIYA+ G+WN V R M KK G S IE +++
Sbjct: 506 VLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSIEVNNEVH 565
Query: 481 LQYLFNLKPKPNSGNL 496
+F+ + P S N+
Sbjct: 566 EFTVFD-RSHPKSDNI 580
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 180/553 (32%), Positives = 280/553 (50%), Gaps = 85/553 (15%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
T RH + KC LKQ +++ +G + L +++ S + + Y +F
Sbjct: 6 TLRHSILCCFHKCGTFDHLKQTTSILITSGLAHHTFFLSDILRSAT----KDLGYTLLLF 61
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
++ P F++NTIIRG + S P + Y+++ + P++ TF +LKA ++L N
Sbjct: 62 DRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNEN 121
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
F + IVK+G +F+ FV+NSL+ A+CG ++ + LF AK DVV+W++L G
Sbjct: 122 -PFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCL 180
Query: 183 RRGELSMARSLFDEMP--------------------VRDL---------------VSWNV 207
R G A F EM +RD+ V W+V
Sbjct: 181 RNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDV 240
Query: 208 -----MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
++ Y+K G + A ++FNE+P R++VSW A+I+GYV C K+AL++F+EM
Sbjct: 241 YVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIE 300
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G P+ T+ S LTACA LG L+ G+ +H + G+ L G AL+DMY+KCG ++
Sbjct: 301 GIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKL-GTALVDMYSKCGCVDE 359
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A+ VF + +DV W+ +I GLA G A S+ +F +M R +V+P +TF+GVL AC+H
Sbjct: 360 ALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAH 419
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
G V+EG + F+LM +Y +EPN+ HYG
Sbjct: 420 GGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWG 479
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
+H ELG L+ ++ SG Y+LL+N+Y+ +W VR+LM
Sbjct: 480 ALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKG 539
Query: 464 IKKQPGCSLIEAD 476
+ K PGCS IE +
Sbjct: 540 VDKSPGCSWIEVN 552
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 179/541 (33%), Positives = 266/541 (49%), Gaps = 112/541 (20%)
Query: 48 SVVIP--GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK 105
SV+ P ++YA +F I EP+ ++NT+ RG A + + + A+ LY M + PN
Sbjct: 6 SVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNS 65
Query: 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL--------- 156
++F F+LK+C + G +HG ++K G++ + +V SLI +A G L
Sbjct: 66 YSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDR 125
Query: 157 ----------------------NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
N A LFD + DVV+W+++ +GY A L+
Sbjct: 126 SSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELY 185
Query: 195 DEMPV--------------------------RDLVSW-------------NVMITGYAKQ 215
+M R L SW NV+I Y+K
Sbjct: 186 KDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKC 245
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
GE+E A LF + K+DV+SWN +I G+ + K+AL +F+EM GE P+DVTMLS+L
Sbjct: 246 GEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVL 305
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHG-NALIDMYAKCGSIERAIEVFLGMRDRD 334
ACA LG +++G+ +H + GV +LIDMYAKCG IE A +VF M R
Sbjct: 306 PACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRS 365
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK 394
+S+W+ +I G A HG A + +F +M++ + P +ITFVG+L ACSH+G ++ G+ F+
Sbjct: 366 LSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFR 425
Query: 395 LMRDEYNIEPNIRHYG---------------------------------------VHGDV 415
M +Y I P + HYG +H +V
Sbjct: 426 SMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNV 485
Query: 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
ELG + L+ + + G YVLLSNIYA+ G W++V K+R L++D IKK PGCS IE
Sbjct: 486 ELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEI 545
Query: 476 D 476
D
Sbjct: 546 D 546
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 174/507 (34%), Positives = 267/507 (52%), Gaps = 82/507 (16%)
Query: 55 INYAHKMFVKITEP--DTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
++YA ++F P YN +IR ++ +P DA+ L+ +M + ++ P++ T +
Sbjct: 118 LSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANT 177
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
+K+C+R+ ++G V K GF ++FV NSLI+ +A+CGD+ A VLF V
Sbjct: 178 VKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGV 237
Query: 172 VAWSSLTAGYARRGE----------LSMARSLFDEMPV------------RDLVSW---- 205
+AW+++ AGY + G+ + R+ FDE+ + +L W
Sbjct: 238 IAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEY 297
Query: 206 -------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
++ YAK GE++KA LF+ + RDVV+W+AMISGY ++A
Sbjct: 298 AEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREA 357
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
L +F EM+ P+DVTM+S+L+ACA LG LE GK VH + + +L G AL+D
Sbjct: 358 LAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVIL-GTALVD 416
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
YAKCG I+ A++ F M R+ TW+ LI G+A +G + E++ +F M + PT++T
Sbjct: 417 FYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVT 476
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+GVL+ACSH VEEG+++F M +Y I P I HYG
Sbjct: 477 FIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNM 536
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
VH +VE+G A K+++ + SG+Y+LLSN YAS G+W
Sbjct: 537 PIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAA 596
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDKAF 480
VRK M + ++K PGCSLIE + F
Sbjct: 597 MVRKEMKEKGVEKIPGCSLIELEGTIF 623
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 134/321 (41%), Gaps = 30/321 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A ++F ++ D ++ +I G QS +A+ ++ +M+ + PN T VL
Sbjct: 321 GELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVL 380
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L G VH I + + +L+ F+A CG + A F+ +
Sbjct: 381 SACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTW 440
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
W++L G A G A LF M ++ +V G + ++ E +R
Sbjct: 441 TWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVL----LACSHGCLVEEGRRH 496
Query: 233 VVSWNAMISGYVLCG-----------MNKQAL--EMFEEMRSVGERPDDVTMLSLLTACA 279
S M Y +C + + L E ++ +R++ P+ V +LL+AC
Sbjct: 497 FTS---MTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACT 553
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI--DMYAKCGSIERAIEVFLGMRDRDVST 337
++E+G++ L + GN ++ + YA G + A V M+++ V
Sbjct: 554 VHKNVEIGEEA----LKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEK 609
Query: 338 WS--TLI--GGLAFHGFAEES 354
+LI G F FAE+S
Sbjct: 610 IPGCSLIELEGTIFEFFAEDS 630
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 189/605 (31%), Positives = 295/605 (48%), Gaps = 114/605 (18%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
+H L +KC N+ T KQI +L+ G N+ +LI+ +V G ++YA +F +
Sbjct: 28 QHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEE 87
Query: 65 ITEP---DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
+ + F++N++IRG + S +PL ++ L+++M ++PN TF F+ K+CT+
Sbjct: 88 NQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKAT 147
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD----------------- 164
+ G +H +K FN V S+I+ +A+ G+++ A ++FD
Sbjct: 148 HEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGY 207
Query: 165 ------GDAK--------MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV------- 203
DA+ DVV+W+++ +GY + G A F EM +++
Sbjct: 208 VSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMV 267
Query: 204 -------------------SW-------------NVMITGYAKQGEMEKANELFNEVPKR 231
SW N +I Y K GE + A ELF+ + ++
Sbjct: 268 VVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEK 327
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
DV+SWN MI GY + ++AL +FE M +P+DVT L +L ACA LG L++GK VH
Sbjct: 328 DVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVH 387
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ + +LIDMYAKCG IE A VF M R++++W+ ++ G A HG A
Sbjct: 388 AYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHA 447
Query: 352 EESIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
E ++A+F EM + RP +ITFVGVL AC+ AG V+ G +YF+ M +Y I P ++HYG
Sbjct: 448 ERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYG 507
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
HG VE G +RL + +
Sbjct: 508 CMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPE 567
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKP 491
+G +VLLSNIYA G W+ V ++R ++D +KK PGC+ IE D ++L K P
Sbjct: 568 NAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVH-EFLVGDKFHP 626
Query: 492 NSGNL 496
N+
Sbjct: 627 ECNNI 631
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 175/518 (33%), Positives = 268/518 (51%), Gaps = 82/518 (15%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVK 64
H RL++ +L+ LK + A + G + DS L +++ +S + G NY+H++F +
Sbjct: 11 HIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNF---GNTNYSHRIFHQ 67
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
EP+ F++NT+I G + + +++ +Y M K + P+ FTF F+LKAC RLL +G
Sbjct: 68 TKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLG 127
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+HG +VK G E + FV SL+ + CG ++ A +FD + +V AW+++ +GY
Sbjct: 128 IKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGV 187
Query: 185 GE----LSMAR---SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
G+ + M R S+FD M +D+VSW+ MI GYA
Sbjct: 188 GKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASN---------------------- 225
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
G+ K+AL++F +M + G RPD M+ +L ACA LG LE+G L+D
Sbjct: 226 ---------GLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWAS-NLMDR 275
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
+ + G ALIDMYAKCG ++ A EVF GMR +D+ W+ I GLA G + + +
Sbjct: 276 NEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGL 335
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------- 410
F +M++ + P TFVG+L AC+HAG V+EG++YF M + + P I HYG
Sbjct: 336 FGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLG 395
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
+H D +L K+L+ + SG+YVL
Sbjct: 396 RAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVL 455
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
LSNIY++ +W K+R +M + IKK PG S IE D
Sbjct: 456 LSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVD 493
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 177/512 (34%), Positives = 264/512 (51%), Gaps = 80/512 (15%)
Query: 5 RHR-SSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
HR S+ L T+ LKQ+ A + NS S+L + + +YA +F
Sbjct: 14 HHRPSTHLLHNFTSPFELKQLHAHLLKT--NSPLSSLPLSRVASVCAFNSSFSYAKLIFQ 71
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
+ + +NT +R A+ +P DA+ L+ ++ + I P+ +T SFVLKAC+RLL
Sbjct: 72 LLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRN 131
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G VHG + K G + N F++N +++ +A CG++ A +FD + DV+ W+ + A +
Sbjct: 132 GKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVK 191
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G+ A LF EMP R++ SW MI GYA+
Sbjct: 192 MGDAEGAYKLFAEMPERNVRSWTSMIGGYAQ----------------------------- 222
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT--SGV 301
CG +K+A+++F EM G P++VT++++L ACAD+G+L +G+++H D + SG
Sbjct: 223 --CGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIH----DFSNRSGY 276
Query: 302 AKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
K + N LIDMY KCG +E A +F M +R V +WS +I GLA HG AE+++A+F +
Sbjct: 277 EKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNK 336
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M V+P +TF+G+L ACSH G VE+G+KYF M +Y I P I HYG
Sbjct: 337 MINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAG 396
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
VH +++L A + L + G YV+LSN
Sbjct: 397 LLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSN 456
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
IYA G W V +VRKLM D +KK PG S I
Sbjct: 457 IYAEAGRWEDVARVRKLMRDRGVKKTPGWSSI 488
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 182/589 (30%), Positives = 285/589 (48%), Gaps = 116/589 (19%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
N +RH S L +C++LR LKQ A + G SD + +L ++ ++ YA K
Sbjct: 28 NERSRHTIS-LIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARK 86
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRL 118
+F +I +P++F +NT+IR A +P+ +++ + M + PNK+TF F++KA +
Sbjct: 87 VFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEV 146
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
++G +HG +K + FV NSLI+ + +CGDL++A +F + DVV+W+S+
Sbjct: 147 SSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMI 206
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITG--------------------------- 211
G+ ++G A LF +M D+ + +V + G
Sbjct: 207 NGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVN 266
Query: 212 ------------YAKQGEMEKANELF-------------------------------NEV 228
Y K G +E A LF N +
Sbjct: 267 VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAM 326
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDDVTMLSLLTACADLGDLEVG 287
PK+D+V+WNA+IS Y G +AL +F E++ + + +T++S L+ACA +G LE+G
Sbjct: 327 PKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELG 386
Query: 288 KKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
+ +H + +G+ + +ALI MY+KCG +E+A EVF + RDV WS +IGGLA
Sbjct: 387 RWIHSYI--KKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLA 444
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HG E++ MF +MQ V+P +TF V ACSH G V+E + F M Y I P
Sbjct: 445 MHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPED 504
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
+HY +H ++ L +A RLL
Sbjct: 505 KHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLE 564
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ G +VLLSNIYA G+W+ V ++RK M + +KK+PGCS IE D
Sbjct: 565 LEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEID 613
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 176/516 (34%), Positives = 259/516 (50%), Gaps = 106/516 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F++N +I+ + +P A+FL M + S+ +KF+ S LKAC+RL + G VH
Sbjct: 70 DPFLWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVKEGTQVH 129
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD------------------------ 164
G ++K G + F++N LI + CG L A +FD
Sbjct: 130 GFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVE 189
Query: 165 --GD-------AKMDVVAWSSLTAGYARRGE-LSMARSLFDEMPVRDLVSWNVMITGYAK 214
G+ K +++ W+S+ GYA+R + + +A LFDEMP +DL+SWN MI GY K
Sbjct: 190 SAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISWNSMIGGYVK 249
Query: 215 QGEMEKANELFNEVPKRDVVSW-------------------------------NAMISGY 243
G +E A LFN +P+RDVV+W N+M+SGY
Sbjct: 250 HGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGY 309
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
V + +ALE+F M PD+ +++ +L+A A LG L +H +++ ++
Sbjct: 310 VQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLS 369
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDMY+KCGSI+ A+ VF G+ + + W+ +IGGLA HG E + M +++
Sbjct: 370 GKL-GVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIE 428
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
R ++P ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 429 RRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSI 488
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E G L K L+ YVLLSN+Y
Sbjct: 489 KLARNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILXGGYNPSSYVLLSNMY 548
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
AS G W V +VR +M + +I+K PGCS IE D +
Sbjct: 549 ASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRV 584
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/529 (30%), Positives = 279/529 (52%), Gaps = 75/529 (14%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H L KC ++ LKQ+ A+V G + D + +++ ++ G INY++++F ++
Sbjct: 15 HNLLSLLDKCKSILELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQL 74
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+ P F +NTIIRG + S+NP+ ++ ++ +M + + P+ T+ F++KA RLL + G
Sbjct: 75 SSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGV 134
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
VH I+K G E +RF++NSLI+ +A CG+ A +FD + +VV+W+S+ GYA+ G
Sbjct: 135 SVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCG 194
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
E+ MA+ F+ M +D+ SW+ +I GY K GE
Sbjct: 195 EMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEY--------------------------- 227
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
+A+ +FE+M+S G + ++VTM+S+ ACA +G LE G+ ++ ++D + VL
Sbjct: 228 ----SEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVL 283
Query: 306 HGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
+L+DMYAKCG+IE A+ +F + DV W+ +IGGLA HG EES+ +F+EMQ
Sbjct: 284 Q-TSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQI 342
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------ 411
+ + P E+T++ +L AC+H G V+E +F+ + + + P HY
Sbjct: 343 VGICPDEVTYLCLLAACAHGGLVKEAWFFFESL-SKCGMTPTSEHYACMVDVLARAGQLT 401
Query: 412 ---------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
H ++ L + ++L+ + + G Y+ LSN+YA
Sbjct: 402 TAYQFICQMPTEPTASMLGALLSGCINHRNLALAEIVGRKLIELEPNHDGRYIGLSNMYA 461
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
W+ +R+ M+ +KK PG S +E +++ + K P+S
Sbjct: 462 VDKRWDDARSMREAMERRGVKKSPGFSFVEISG-VLHRFIAHDKTHPDS 509
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 275/536 (51%), Gaps = 76/536 (14%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S L K C + L Q A + G D I S + I +++Y+ +F ++ P
Sbjct: 13 SLLIKSCKTIPHLHQFHAHIIHKGLEQD-----HFIISHFLSISTSVSYSTSIFNRLLNP 67
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMGFCV 127
TF+YN +++ +++ +D L+ +M++ +K+T+ ++K C+ L G V
Sbjct: 68 STFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIV 127
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG ++ G + +V +SLI F+ C ++ +A +FD + +VV+W+++ AGYA G+L
Sbjct: 128 HGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDL 187
Query: 188 SMARSLFDEMPVRDLVSWN-------------------------------VMITGYAKQG 216
A+ +F+ MP R+L SWN VMI GYAK G
Sbjct: 188 ENAKRVFERMPERNLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVG 247
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
+M A LF+E P++DVV+W+A+ISGY +A+++F EM S+ +PD+ M+SL++
Sbjct: 248 DMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMS 307
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
AC+ LG+ ++ K V L + + ALIDM+AKCG++E+A+++F M RD+
Sbjct: 308 ACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLI 367
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+LI GL+ HG E++ +F M + P + F +L ACS G +E+G +F M
Sbjct: 368 PCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTM 427
Query: 397 RDEYNIEPNIRHYG---------------------------------------VHGDVEL 417
+++Y++ P+ HY +HGDVEL
Sbjct: 428 KNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVEL 487
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
RLL + +++G YVLLSNIYAS +W V VR M + I+K PGCS I
Sbjct: 488 REEVANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPGCSYI 543
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 180/580 (31%), Positives = 287/580 (49%), Gaps = 116/580 (20%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV-IPGAINYAHKMFVKITEPD 69
L + C + + QI A +NG + ++ LI S++ ++++ +F +I P+
Sbjct: 15 LLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPN 74
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
FM+NT+IRG ++S NP +A+ LY M K PN FTF F+L +C RL G VH
Sbjct: 75 LFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVH 134
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
I+K+GFE + FVRN+LI+ ++ G+LN A LFD D+V+++++ GYA +
Sbjct: 135 SHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPE 194
Query: 189 MARSLFDEMPVRDL------------------------------------VSWNVMITG- 211
A LF EM + + N+++
Sbjct: 195 SALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSA 254
Query: 212 ----YAKQGEMEKANELFNEV-PKRDVVSWNAMISGYVLC-------------------- 246
YAK G + A +F+ + + +W++M+ GY C
Sbjct: 255 IVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVIS 314
Query: 247 -----------GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
G +ALE+F+EM ++G +PD+VT++++L+ACA LG ++GK+++ +
Sbjct: 315 WTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYI 374
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEE 353
+ + A++DMYAKCGSI+ A+E+F +G + ++++I GLA HG E
Sbjct: 375 ENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGET 434
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
+I +FRE+ ++P E+TFVGVL AC H+G +EEGKK F+ M + Y I+P + HYG
Sbjct: 435 AITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMV 494
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
HG+V++G +A ++LL M
Sbjct: 495 DLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGA 554
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
YVLLSNI A +W +VRK+M+D I+K PG S IE
Sbjct: 555 RYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIE 594
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 166/503 (33%), Positives = 266/503 (52%), Gaps = 86/503 (17%)
Query: 55 INYAHKMFVKI---TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV 111
++Y++ +F ++ + + ++N +IRG A + + + ++ +M + +KP+ FT+ +V
Sbjct: 1 MDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYV 60
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFE---------FNRFVR------------------- 143
+ +C L + G VH +IVK GFE FN +++
Sbjct: 61 INSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYAR 120
Query: 144 --------------NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
N +I + N GD+ +A LFD + D+V+W+S+ GYA+ G+++
Sbjct: 121 KIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVAN 180
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
AR LF++MP ++++SW MI YA ++E A F +P+R+VVSWN+MIS Y G
Sbjct: 181 ARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKF 240
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
++L +F +M+S G PD T +S+L+AC++LGDLE GK +H D++ ++V+ G A
Sbjct: 241 VESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQ--SEVMVGTA 298
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
L +MYA+CG +++A VF+ + RDV W+ +I LA HG +EE+I +F M++ ++P
Sbjct: 299 LTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPN 358
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
+ TF L ACSH G VEEG F M +Y I P I HYG
Sbjct: 359 DFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLV 418
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
V GD++L ++ M +ESG YVLLSNI+AS G+W
Sbjct: 419 EDMPFQPDVAIWGALLGGCRVTGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQWI 478
Query: 451 RVEKVRKLMDDSDIKKQPGCSLI 473
RK MD+ I K+ G S++
Sbjct: 479 EAADARKKMDEKKISKKTGSSVV 501
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 20/193 (10%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C+NL L+ + + ++G S S + + G ++ A +F+KI + D F +N
Sbjct: 269 CSNLGDLEFGKYIHYLSGDLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWN 328
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT--------RLLYRNM--G 124
II+ A +A+ ++ M K +KPN FTF+ L AC+ +++ +M
Sbjct: 329 VIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIFNSMEKD 388
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF-DGDAKMDVVAWSSLTAGYAR 183
+ + KI YG + RN G L A +L D + DV W +L G
Sbjct: 389 YKIIPKITHYGCLIDMLCRN---------GQLEEAMLLVEDMPFQPDVAIWGALLGGCRV 439
Query: 184 RGELSMARSLFDE 196
G+L +A + ++
Sbjct: 440 TGDLKLAEKVVEK 452
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 238/443 (53%), Gaps = 70/443 (15%)
Query: 98 KCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN 157
KC + PN +TF ++K C + G +H +I+K+GFE + FVRNSLI+ ++ CG +
Sbjct: 4 KC-VAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIG 62
Query: 158 TASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGE 217
A +F+ + D+V W+S+ GY + GE+ AR LF+EMP RDL SWN MI GY G+
Sbjct: 63 DARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGD 122
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM------------------ 259
M A +LFN++P RD+VSWN MI GY + A E+F M
Sbjct: 123 MTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRI 182
Query: 260 -----------RSVGER-PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+ +GE P++ T++S+LTACA LG L+ GK +H + + VL
Sbjct: 183 KDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLS 242
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
AL+ MYAKCG+++ A +VF M +R V +W+++I G HG A++++ MF +M++
Sbjct: 243 TALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPM 302
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P + TF+ VL AC+H+G + EG YF LMR Y IEP + HYG
Sbjct: 303 PNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEE 362
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
H + EL + KRL+ + + G Y+LLSNIYA+ G+
Sbjct: 363 LIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGK 422
Query: 449 WNRVEKVRKLMDDSDIKKQPGCS 471
W+ VE VRK+M + + K G S
Sbjct: 423 WDDVEIVRKMMKERGLTKTTGLS 445
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 165/523 (31%), Positives = 285/523 (54%), Gaps = 73/523 (13%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L KC ++ LK++ A+ G + + S + +++ ++ G I+Y++++F +I+ P
Sbjct: 20 LLDKCKSMLELKKLHAIGISYGLSHEYSFIFKILSFSALSNSGDIDYSYRVFSQISSPTI 79
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F +N IIRG + S+NP+ ++ ++ +M + + P+ T+ F++KA RL + G VH +
Sbjct: 80 FSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLSKQKSGVSVHAQ 139
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
I+K G E +RF++NSLI+ +A+CG++ A +F+ ++V+W+S+ GYA+ GE++MA
Sbjct: 140 IIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAKCGEMAMA 199
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
+ +F+ M RD+ SW+ I GY K GE +
Sbjct: 200 QKVFESMQERDVRSWSSFIDGYVKAGEY-------------------------------R 228
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+A+ +FE+MR+VG + ++VTM+S+L+ACA LG L+ G+ +H ++D + VL +L
Sbjct: 229 EAMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQ-TSL 287
Query: 311 IDMYAKCGSIERAIEVFLGM--RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+DMYAKCG+IE A+ VF G+ DV W+ +IGGLA HG EES+ +F+EMQ +R
Sbjct: 288 VDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRS 347
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFK---------------LMRD--------------- 398
EIT++ +L AC+H G V+E +F+ M D
Sbjct: 348 DEITYLCLLAACAHGGLVKEAWNFFESLVKRGMTPTSEHYACMVDVLARAGQLTTAYQFI 407
Query: 399 -EYNIEPNIRHYGV-------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+ IEP G H + +L ++L+ + + G Y+ LSN+YA W+
Sbjct: 408 CQIPIEPTASMLGAIFSGCINHRNFDLAETVGRKLIELDPNNDGRYIGLSNVYAVVKRWD 467
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
+ +R+ M+ +KK PG S +E + +++ + K P+S
Sbjct: 468 DSKSMREAMERRGVKKSPGFSFVEISE-IHHRFIAHDKTHPDS 509
>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
Length = 841
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 178/557 (31%), Positives = 279/557 (50%), Gaps = 111/557 (19%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSAL-RELIYSGSVVIPGAINYAHKMFVKITE 67
S+L +++ KQ+ AL+ I+G + L R+++ S S Y H +
Sbjct: 4 SKLSTISLSVKQAKQVHALILIHGLSHLEPILARQILJSASNYSATVAQYVHSVLHHSKS 63
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
PD+F + IR S Q +A LY QM++ + P F S LKAC R+ YR G +
Sbjct: 64 PDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSI 123
Query: 128 HGKIVKYGFEFNR---FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
HG++ K+GF +V +L+ F+ GD+ A +FD A+ +VV+W+S+ AGY +
Sbjct: 124 HGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKS 183
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS--- 241
G+L +A+ +FDE+P +D++SWN MI+GYA+ G+MEKA LF ++P+R+ SWNAMIS
Sbjct: 184 GDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYV 243
Query: 242 ----------------------------GYVLCG-------------------------- 247
GY CG
Sbjct: 244 EFGDIDSARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIAC 303
Query: 248 -----MNKQALEMFEEM--RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
K+AL++F M V +PD++T+ S+++AC+ LGDL G + + + G
Sbjct: 304 YAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRL--G 361
Query: 301 VAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ H AL+D+YAKCGSI++A E+F G+R +D+ ++ +I G +G A ++I +F
Sbjct: 362 IEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFD 421
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------- 411
EM ++ P ITF+G+L A +HAG VEEG + F M+ +YN+ P++ HYG+
Sbjct: 422 EMVDAQIFPNLITFIGLLTAYNHAGLVEEGYRCFTSMK-KYNLVPSVDHYGIMVDLLGRA 480
Query: 412 -------------------------------HGDVELGRLANKRLLNMRKDESGDYVLLS 440
H +VE G +A + + D +G LLS
Sbjct: 481 GRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYXSLLS 540
Query: 441 NIYASRGEWNRVEKVRK 457
NIYAS W+ V+++RK
Sbjct: 541 NIYASGERWDDVKRLRK 557
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 172/505 (34%), Positives = 271/505 (53%), Gaps = 76/505 (15%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+C+ +R LKQI A + G SD+ +A R L + + P +NYA+ +F +I + F+
Sbjct: 34 QCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCAS--PSDMNYAYLVFTRINHKNPFV 91
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+NTIIRG ++S P A+ ++ M S+KP + T+ V KA RL G +HG
Sbjct: 92 WNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGM 151
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++K G E + F+RN++++ + CG L A +F G DVVAW+S+ G+A+ G + A
Sbjct: 152 VIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQA 211
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
++LFDEMP R+ VSWN MI+G+ + G + A ++F E+ ++DV
Sbjct: 212 QNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDV----------------- 254
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+PD TM+SLL ACA LG E G+ +H ++ + ++ AL
Sbjct: 255 --------------KPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVV-TAL 299
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMY KCG IE + VF + +S W+++I GLA +GF E ++ +F E++R + P
Sbjct: 300 IDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDS 359
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH------------------ 412
++F+GVL AC+H+G+V ++F+LM+++Y IEP+I+HY +
Sbjct: 360 VSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIK 419
Query: 413 ---------------------GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
G+VE+ + A K L + DE+ YVLLSN YAS G +
Sbjct: 420 NMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEE 479
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEAD 476
+ R LM + ++K+ GCS IE D
Sbjct: 480 AVEQRLLMKERQMEKEVGCSSIEVD 504
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 172/512 (33%), Positives = 267/512 (52%), Gaps = 67/512 (13%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTING-FNSDSSALREL-IYSGSVVIPGAINYAHKM 61
N H S L++ C+ + ++Q+ A FN + R L +YS + + YA +
Sbjct: 17 NLHLS--LFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKI--NDLGYARSI 72
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
F +I +NTII+ ++Q D + L+ ++ P+ FT V+K C RL
Sbjct: 73 FDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVV 131
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
G +HG +K GF + FV+ SL+ ++ CG+++ A +FDG DVV W+SL G
Sbjct: 132 QEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG- 190
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
+LVSWN MI GY K G+ + A ELF ++P D+V+WN MI+
Sbjct: 191 -------------------NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIA 231
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
GY L G A++MF M +G RP T++S+L+A + L L G+ +H + +
Sbjct: 232 GYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFEL 291
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+L G +LI+MYAKCG IE A+ VF ++ + V W+ +I GL HG A ++A+F EM
Sbjct: 292 DGIL-GTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEM 350
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------- 411
+ ++P I F+GVL AC+HAG V++G++YF +M +EY IEP + HYG
Sbjct: 351 CKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGH 410
Query: 412 -----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
HG +++G A +R++ + + G Y+LLSN+
Sbjct: 411 LEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNM 470
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
YA+ G W +V VR++M +K PGCS +E
Sbjct: 471 YAASGMWEKVSHVREMMYKRGFRKDPGCSSVE 502
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/527 (30%), Positives = 288/527 (54%), Gaps = 50/527 (9%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
++ K+C+ + L+ A + + + + I + S ++ A ++ +P+
Sbjct: 785 QIIKQCSTPKLLESALAAMIKTSQTQNCYLMNQFITACSSF--NRLDLAVSFMTQMQKPN 842
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F+YN +I+G +P+ ++ Y +M + S+ P+ +T+S +++A G +
Sbjct: 843 VFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQASA--FASGFGESLQA 900
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
I K+GF F+ ++ +LI F++ G + A +FD + D V W+++ + Y + ++
Sbjct: 901 HIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPERDDVTWTTMVSAYRQVLDMDS 960
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
A SL ++MP ++ +WN +I GY + G +E A LFN++P +D++SW MI+GY
Sbjct: 961 ANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRY 1020
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG-VAKVLHGN 308
++A+ +F +M G PD+VTM ++++ACA LG LE+GK+VH + + +G V V G+
Sbjct: 1021 REAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVH--MYTVQNGFVLDVYIGS 1078
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
AL+DMY+KCGS+ERA+ VF + +++ W+++I GLA HGFA+E++ MF +M+ V+P
Sbjct: 1079 ALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKP 1138
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
+TFV V AC+HAG VEEG++ ++ M D+Y+I N+ HYG
Sbjct: 1139 NTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALEL 1198
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+H ++E+ +A +L+ + SG Y LL ++YA + W
Sbjct: 1199 IGSMEFEPNAVIWGALLDGCRIHKNLEIAEIAFNKLMILEPMNSGYYFLLVSMYAEQNRW 1258
Query: 450 NRVEKVRKLMDDSDIKKQ-PGCSLIEADDKAFLQYLFNLKPKPNSGN 495
V ++R M + I+K PG S I D + +LF K +S +
Sbjct: 1259 RDVAEIRGRMRELGIEKICPGTSSIRIDKR---DHLFAAADKSHSAS 1302
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 182/576 (31%), Positives = 276/576 (47%), Gaps = 113/576 (19%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
K C ++ LKQI A + G + D +L +L+ + G +NYA KMF I P +
Sbjct: 45 KSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLI 104
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
YN II+ A+ N + L++++ + + P+ FT+ FV KA L + + G +
Sbjct: 105 YNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVT 164
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K G EF+ +VRNSLI +A + +LFD DV++W+ + +GY + A +
Sbjct: 165 KTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAIN 224
Query: 193 LFDEMP----------------------------------VRDLVSW-----NVMITGYA 213
+F M VRD V + N ++ Y
Sbjct: 225 VFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGNALLDMYC 284
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE---------------- 257
K G + A +F E+P ++V+ W M+SGY CG ++A E+FE
Sbjct: 285 KCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMING 344
Query: 258 ---------------EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
EM+ +PD ++SLLT CA G +E GK +H +D
Sbjct: 345 YVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIH-EFIDENRIPI 403
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
+ G ALI+MYAKCG IE+A+E+F G+R +D ++W+++I GLA +G +++ +F +M+
Sbjct: 404 DAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMK 463
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------ 410
+ VRP +ITF+GVL ACSH G VEEG+K+F MR EY I+P + HYG
Sbjct: 464 QAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLL 523
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
++G+VE+G K+L+ +S + LL+
Sbjct: 524 NEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLLA 583
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
NIYA W V KVR+ M D +KK PGCS IE D
Sbjct: 584 NIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVD 619
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 169/518 (32%), Positives = 267/518 (51%), Gaps = 76/518 (14%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSD---SSALRELIYSGSVV--IPGAINYAH 59
+H L + C++ LK I + SD +S L L S + YA+
Sbjct: 12 KHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAY 71
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
+F +I P+ F++N +IR + P A YTQM K I P+ TF F++KA + +
Sbjct: 72 GIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEME 131
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
+G H +IV++GF+ + +V NSL++ +ANCG + A +F DVV+W+S+ A
Sbjct: 132 CVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVA 191
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
GY + G + AR +FDEMP R+L +W++MI GYAK EK
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEK------------------- 232
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
A+++FE M+ G ++ M+S++++CA LG LE G++ + ++
Sbjct: 233 ------------AIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
V +L G AL+DM+ +CG IE+AI VF G+ + D +WS++I GLA HG A +++ F
Sbjct: 281 TVNLIL-GTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFS 339
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
+M L P ++TF VL ACSH G VE+G + ++ M+ ++ IEP + HYG
Sbjct: 340 QMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRA 399
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
++ + E+ L+ ++ + SG YVLLS
Sbjct: 400 GKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLS 459
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
NIYA G+W+++E +R +M + +KK PG SLIE D K
Sbjct: 460 NIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGK 497
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/506 (32%), Positives = 270/506 (53%), Gaps = 63/506 (12%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S L K CT TL+Q+ A + G + D + + + + + +Y +F ++ P
Sbjct: 77 STLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSL--SNFSYTTSVFNGVSSP 134
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
T ++NT I+G +++ + V L+ +M++ P+KFT+ ++KAC+++ G H
Sbjct: 135 STVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFH 194
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G V+ G + FV SLI + CG++ A +FD + +VV+W+++ AGYA +L
Sbjct: 195 GSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLV 254
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP--KRDVVSWNAMISGYVLC 246
AR LFDEMP ++ VSWN +I+GY K G++ A ++F+E+P RDVV+W+A+ISG V
Sbjct: 255 EARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNV-- 312
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
+PD+ M+SL++AC+ +G LE+ K V + + V +
Sbjct: 313 ------------------KPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHV 354
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
ALIDM AKCGS++RA ++F M RD+ ++ +++ GL+ HG +++++F M +
Sbjct: 355 IAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGL 414
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------- 410
P ++ F +L ACS AG V+EG YF+ M+ +Y+I P+ HY
Sbjct: 415 TPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAY 474
Query: 411 -----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
+H D+ELG + +L + +G+YVLLSNIYA+
Sbjct: 475 ELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAE 534
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLI 473
+W V +R M + I+K PGCS I
Sbjct: 535 QWLDVSLLRNKMRERGIRKIPGCSWI 560
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 162/526 (30%), Positives = 284/526 (53%), Gaps = 48/526 (9%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
++ K+C+ + L+ A + N D + + I + + ++ A ++ EP+
Sbjct: 33 KIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSF--KCLDLAVSTMTQMQEPN 90
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F+YN + +G +P+ ++ LY +M + S+ P+ +T+S ++KA + G +
Sbjct: 91 VFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASS--FASRFGESLQA 148
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
I K+GF F+ ++ +LI F++ G + A +FD + D +AW+++ + Y R ++
Sbjct: 149 HIWKFGFGFHVKIQTTLIDFYSATGGIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDS 208
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
A SL ++M ++ + N +I GY G +E+A LFN++P +D++SW MI GY
Sbjct: 209 ANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRY 268
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
++A+ +F +M G PD+VTM ++++ACA LG LE+GK+VH L V V G+A
Sbjct: 269 REAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQ-NGFVLDVYIGSA 327
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
L+DMY+KCGS+ERA+ VF + +++ W+++I GLA HGFA+E++ MF +M+ V+P
Sbjct: 328 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 387
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
+TFV V AC+HAG V+EG++ ++ M D+Y+I N+ HYG
Sbjct: 388 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 447
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+H ++ + +A +L+ + SG Y LL ++YA + W
Sbjct: 448 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWR 507
Query: 451 RVEKVRKLMDDSDIKKQ-PGCSLIEADDKAFLQYLFNLKPKPNSGN 495
V ++R M + I+K PG S I D + +LF K +S +
Sbjct: 508 DVAEIRGRMRELGIEKICPGTSSIRIDKR---DHLFAAADKSHSAS 550
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 175/507 (34%), Positives = 271/507 (53%), Gaps = 74/507 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L ++ ++ + I A + NG + D + EL+ S S AI+YA ++F P+
Sbjct: 55 LLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKC--HAIDYASRIFQYTHNPNV 112
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++Y +I G S N L+A+ LY++M SI P+ + + +LKAC L G VH +
Sbjct: 113 YLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSR 172
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+K GF NR VR ++ + CG+L GDA
Sbjct: 173 ALKLGFSSNRLVRLRIMELYGKCGEL--------GDA----------------------- 201
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +F+EMP D+V+ VMI+ Y+ QG +E+A +F+ V ++D V W AMI G+V
Sbjct: 202 RRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETN 260
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ALE F M+ RP++ T++ +L+AC+ LG LE+G+ VH + + + GNAL
Sbjct: 261 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIEL-NLFVGNAL 319
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
I+MY++CGSI+ A VF M+DRDV T++T+I GL+ +G + ++I +FR M ++RPT
Sbjct: 320 INMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTN 379
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
+TFVGVL ACSH G V+ G + F M +Y +EP I HYG
Sbjct: 380 VTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIR 439
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+H ++ELG K L + + +SG YVLLS++YAS G+W
Sbjct: 440 TMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKE 499
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEADDK 478
+VR M ++ ++K+PGCS IE +++
Sbjct: 500 AAQVRAKMKEAGMQKEPGCSSIEVNNE 526
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 158/341 (46%), Gaps = 21/341 (6%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
NR R R L+ KC L +++ D A +I S S G + A
Sbjct: 181 NRLVRLRIMELYGKCGELGDARRV-----FEEMPEDVVASTVMISSYS--DQGLVEEAGA 233
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F ++ DT + +I G +++ A+ + M+ +++PN+FT VL AC++L
Sbjct: 234 VFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGA 293
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+G VH + K+ E N FV N+LI ++ CG ++ A +FD DV+ ++++ +G
Sbjct: 294 LEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISG 353
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELFNEVPK-----R 231
+ G+ A LF M R L NV G + G ++ E+F+ + +
Sbjct: 354 LSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEP 413
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
+ + M+ L G + E ++ +R++ PD + + +LL+AC +LE+G++V
Sbjct: 414 QIEHYGCMVD---LLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVA 470
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
L D G A L +YA G + A +V M++
Sbjct: 471 KELED--RGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKE 509
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/523 (32%), Positives = 268/523 (51%), Gaps = 72/523 (13%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
CT +KQ+ A + NG + S L +LI + V +Y +F ++ P+ F++
Sbjct: 52 CTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWT 111
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK-IVK 133
+IRG A ++ YT+M + + P FTFS + KAC L ++G VH + I+
Sbjct: 112 AMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILI 171
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF + +V NS+I + CG L A R +
Sbjct: 172 GGFASDLYVGNSMIDLYVKCGFLGCA-------------------------------RKV 200
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FDEM RD+VSW +I YAK G+ME A+ LF+++P +D+V+W AM++GY G K+AL
Sbjct: 201 FDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEAL 260
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALID 312
E F++M+ VG D+VT+ +++ACA LG ++ + G + V+ G+ALID
Sbjct: 261 EYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALID 320
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+KCGS + A +VF M++R+V ++S++I G A HG A ++ +F +M + ++RP ++T
Sbjct: 321 MYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVT 380
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+G+L ACSHAG VE+G++ F M + + P+ HY
Sbjct: 381 FIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTM 440
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+HG+ ++ ++A L + + G+Y+LLSNIYAS G W V
Sbjct: 441 PMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVS 500
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
K+RK++ + KK PGCS E + + P S +
Sbjct: 501 KLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEI 543
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 186/605 (30%), Positives = 284/605 (46%), Gaps = 115/605 (19%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H L KC ++ +LKQI +L+ +G ++ A +LI ++ ++YA +F I
Sbjct: 26 HPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSI 85
Query: 66 --TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
P+ F++NT+IR + + P ++ L++QM + PN TF + K+C + +
Sbjct: 86 HHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHE 145
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD------------------- 164
+H +K + V SLI+ ++ G+L A ++FD
Sbjct: 146 AKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVS 205
Query: 165 ----GDAK--------MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV--------- 203
DA+ DVV+W+++ AGY + G A + F M D+
Sbjct: 206 EGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSV 265
Query: 204 -----------------SW-------------NVMITGYAKQGEMEKANELFNEVPKRDV 233
SW N ++ Y+K GE+ A +LF+ + +DV
Sbjct: 266 LSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDV 325
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
+ WN MI GY + ++AL +FE M P+DVT L++L ACA LG L++GK VH
Sbjct: 326 ILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAY 385
Query: 294 L---LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
+ L T V V ++I MYAKCG +E A +VF M R +++W+ +I GLA +G
Sbjct: 386 IDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGH 445
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
AE ++ +F EM +P +ITFVGVL AC+ AG VE G +YF M +Y I P ++HYG
Sbjct: 446 AERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYG 505
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
+HG VE G +RL + +
Sbjct: 506 CMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPE 565
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKP 491
SG YVLLSNIYA G W+ V K+R ++D +KK PGC+ IE D ++L K P
Sbjct: 566 NSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVH-EFLVGDKFHP 624
Query: 492 NSGNL 496
S N+
Sbjct: 625 QSENI 629
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 169/484 (34%), Positives = 271/484 (55%), Gaps = 62/484 (12%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KC ++ LK+I ALV G + D + +++ ++ G INY+ + + P F +
Sbjct: 23 KCNSMLELKKIHALVITLGLSQDEPFVSKILSFSALSDSGNINYSCWVLFSLLNPTIFNW 82
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
NT+IRG ++S+NP ++ ++ QM K + P+ T+ F++KA RLL R +GF +H I+K
Sbjct: 83 NTVIRGYSKSKNPNGSISVFIQMLKVGVFPDYLTYPFLVKASARLLKRELGFSIHAHIIK 142
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+GFE +RF+ NSL++ +A+ GD+ S AR +
Sbjct: 143 HGFESDRFISNSLVHMYASFGDI-------------------------------SCARYV 171
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FD MPV++LVSWN M+ G AK G M A +LF+ +P RDV+SW+++I GYV G A+
Sbjct: 172 FDGMPVKNLVSWNSMVDGSAKCGNMVLARQLFDLMPDRDVLSWSSLIDGYVKNGDYGDAM 231
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
+F++MR G +P++VTM+S+L ACA LG L+ G+ +H ++D + VL +L+DM
Sbjct: 232 VVFDKMRVSGPKPNEVTMVSVLCACAHLGALDKGRMMHHYVIDNKLPLTLVL-CTSLVDM 290
Query: 314 YAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
YAKCG+I A +VF G+ DV W+ +IGGLA HG +ES+ +F+EM + V+P EI
Sbjct: 291 YAKCGAINEAFDVFRGIPAELSDVLLWNAMIGGLATHGLVKESLDLFKEMNFVGVKPDEI 350
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV--ELGRLANKRLLNMR 429
T++ +L AC+H G V+E +F + ++ + I HY DV G++A
Sbjct: 351 TYLSLLHACAHGGLVKEAWYFFDCL-GKHGMTLKIEHYACIVDVMARAGQIAKA------ 403
Query: 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKP 489
Y LS +RK M+ ++K PG S + A +++ +++ + K
Sbjct: 404 ------YQFLS------------RNMRKAMERMGVRKSPGYSFV-AINESLHRFIAHDKT 444
Query: 490 KPNS 493
P+S
Sbjct: 445 HPSS 448
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 184/586 (31%), Positives = 285/586 (48%), Gaps = 117/586 (19%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYS-GSVVIPGAINYA----HKMFVK 64
+L C N + +I A + NGF + + ++ + + P + +A H+ ++
Sbjct: 19 KLLGSCKNSEDVNKIHARLVTNGFIKNPNLTTRIVLAFAASRRPYXVEFARFVFHEYXIR 78
Query: 65 ITEP------DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
P D +++N +I+ + +P A+ L+ M + + +KF+ S VLKAC+RL
Sbjct: 79 SFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRL 138
Query: 119 LYRNMGFCVHGKIVK----------------------YGFEFNRFVR---------NSLI 147
G +HG + K GF F R NS+I
Sbjct: 139 GLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMI 198
Query: 148 YFHANCGDLNTASVLFD-----------------GDAKM-----------------DVVA 173
+ CG +A LFD G A+ D+++
Sbjct: 199 DGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLIS 258
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233
W+S+ GY + G + A+ LFD MP RD+V+W+ MI GYAK G + +A LF+++P RDV
Sbjct: 259 WNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDV 318
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHC 292
VS+N+MI+GYV N +ALE+F +M PD+ T++ +L+A A LG L +H
Sbjct: 319 VSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHL 378
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+++ + L G ALIDMY+KCGSI+ A+ VF G+ ++ + W+ +IGGLA HG E
Sbjct: 379 YIVEKQFFLGGKL-GVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGE 437
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV- 411
+ M +++R ++P +ITFVG+L ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 438 SAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 497
Query: 412 --------------------------------------HGDVELGRLANKRLLNMRKDES 433
H + E G L K L+
Sbjct: 498 VDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIWEAGYNP 557
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
YVLLSN+YAS G+W V ++R +M + I+K PGCS IE D +
Sbjct: 558 SSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCSWIELDGRV 603
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 173/547 (31%), Positives = 280/547 (51%), Gaps = 83/547 (15%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVKITE 67
+RL + + L+ LK I A + G + D+ L +++ +S + G NY+ ++ + E
Sbjct: 14 NRLIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNF---GNTNYSFRILDQTKE 70
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P+ F++NT+IRG + +++ +Y M K + P+ FTF FVLKAC R+L +G +
Sbjct: 71 PNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKM 130
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H +VK G E + FV+ SLI + CG ++ A +FD + +W++ +GY G+
Sbjct: 131 HSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKC 190
Query: 188 SMARSLFDEM---------------------------------------PVRDLVSWNVM 208
A +F + VR++ +
Sbjct: 191 REAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATAL 250
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
+ Y K G ME+A +F+ + ++++VSW++MI GY G+ K+AL++F +M + G +PD
Sbjct: 251 VDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDC 310
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
M+ +L +CA LG LE+G L++ + + G ALIDMYAKCG ++RA EVF
Sbjct: 311 YAMVGVLCSCARLGALELGDWAS-NLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFR 369
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
GMR +D W+ I GLA G ++++ +F +M++ ++P TFVG+L AC+HAG VEE
Sbjct: 370 GMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEE 429
Query: 389 GKKYFKLMRDEYNIEPNIRHYG-------------------------------------- 410
G++YF M + + P I HYG
Sbjct: 430 GRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGC 489
Query: 411 -VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469
+H D +L + K+L+ + SG+YVLLSNIYA+ +W K+R +M + +KK PG
Sbjct: 490 RLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPG 549
Query: 470 CSLIEAD 476
S IE D
Sbjct: 550 YSWIEVD 556
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 162/526 (30%), Positives = 284/526 (53%), Gaps = 48/526 (9%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
++ K+C+ + L+ A + N D + + I + + ++ A ++ EP+
Sbjct: 33 KIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSF--KRLDLAVSTMTQMQEPN 90
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F+YN + +G +P+ ++ LY +M + S+ P+ +T+S ++KA + G +
Sbjct: 91 VFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASS--FASRFGESLQA 148
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
I K+GF F+ ++ +LI F++ G + A +FD + D +AW+++ + Y R ++
Sbjct: 149 HIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDS 208
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
A SL ++M ++ + N +I GY G +E+A LFN++P +D++SW MI GY
Sbjct: 209 ANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRY 268
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
++A+ +F +M G PD+VTM ++++ACA LG LE+GK+VH L V V G+A
Sbjct: 269 REAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQ-NGFVLDVYIGSA 327
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
L+DMY+KCGS+ERA+ VF + +++ W+++I GLA HGFA+E++ MF +M+ V+P
Sbjct: 328 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 387
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
+TFV V AC+HAG V+EG++ ++ M D+Y+I N+ HYG
Sbjct: 388 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 447
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+H ++ + +A +L+ + SG Y LL ++YA + W
Sbjct: 448 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWR 507
Query: 451 RVEKVRKLMDDSDIKKQ-PGCSLIEADDKAFLQYLFNLKPKPNSGN 495
V ++R M + I+K PG S I D + +LF K +S +
Sbjct: 508 DVAEIRGRMRELGIEKICPGTSSIRIDKR---DHLFAAADKSHSAS 550
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 181/588 (30%), Positives = 282/588 (47%), Gaps = 116/588 (19%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
N +RH S L ++C +LR LKQ + G SD + +L ++ ++ YA K
Sbjct: 28 NERSRHIS--LIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARK 85
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLL 119
+F +I +P++F +NT+IR A +P+ +++ + M + PNK+TF F++KA +
Sbjct: 86 VFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVS 145
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
++G +HG VK + FV NSLI+ + +CGDL++A +F + DVV+W+S+
Sbjct: 146 SLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMIN 205
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITG---------------------------- 211
G+ ++G A LF +M D+ + +V + G
Sbjct: 206 GFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNV 265
Query: 212 -----------YAKQGEMEKANELF-------------------------------NEVP 229
Y K G +E A LF N +P
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDDVTMLSLLTACADLGDLEVGK 288
++D+V+WNA+IS Y G +AL +F E++ + + +T++S L+ACA +G LE+G+
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385
Query: 289 KVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
+H + G+ H +ALI MY+KCG +E++ EVF + RDV WS +IGGLA
Sbjct: 386 WIHSYI--KKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
HG E++ MF +MQ V+P +TF V ACSH G V+E + F M Y I P +
Sbjct: 444 HGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEK 503
Query: 408 HYG---------------------------------------VHGDVELGRLANKRLLNM 428
HY +H ++ L +A RLL +
Sbjct: 504 HYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLEL 563
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G +VLLSNIYA G+W V ++RK M + +KK+PGCS IE D
Sbjct: 564 EPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEID 611
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 176/551 (31%), Positives = 271/551 (49%), Gaps = 89/551 (16%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L KC ++R LK++ L+ L +LI G INYA + +I P
Sbjct: 10 LLAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVLRQIHNPSV 69
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+++N++IRG S NP ++ LY QM + P+ FTF FVLKAC + ++ G C+H
Sbjct: 70 YIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDCGKCIHSC 129
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
IVK GFE + + L++ + +C D+ + +FD K +VVAW+ L AGY + + A
Sbjct: 130 IVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEA 189
Query: 191 RSLFDEM-----------------------------------------PVRDLVSWNVMI 209
+F++M P + N+++
Sbjct: 190 LKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIIL 249
Query: 210 TG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
YAK G ++ A +LFN++P+R++VSWN+MI+ Y +++AL++F +M + G
Sbjct: 250 ATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGV 309
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERA 323
PD T LS+L+ CA L +G+ VH LL +G+A + AL+DMYAK G + A
Sbjct: 310 YPDKATFLSVLSVCAHQCALALGQTVHAYLLK--TGIATDISLATALLDMYAKTGELGNA 367
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR-LKVRPTEITFVGVLVACSH 382
++F ++ +DV W+++I GLA HG E+++MF+ MQ + P IT++GVL ACSH
Sbjct: 368 QKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSH 427
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
G VEE KK+F+LM + Y + P HYG
Sbjct: 428 VGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETMTVQPNIAIWG 487
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
+H +V + RL + +SG ++LLSNIYA G W V RK+M
Sbjct: 488 ALLNGCQIHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAGRWEEVNVTRKVMKHKR 547
Query: 464 IKKQPGCSLIE 474
I K G S +E
Sbjct: 548 ITKTIGHSSVE 558
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 170/516 (32%), Positives = 254/516 (49%), Gaps = 106/516 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F++N +I+ + +P ++FL+ M + + +KF+ S VLKAC+RL + G +H
Sbjct: 69 DPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFVKAGMXIH 128
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G + K G + F++N LI + CG L + +FD + D V+++S+ GY + G +
Sbjct: 129 GFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIE 188
Query: 189 MARSLFD----------------------------------EMPVRDLVSWNVMITGYAK 214
AR LFD EMP +DL+SWN MI GY K
Sbjct: 189 SARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVK 248
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ----------------------- 251
G +E A +LF+ +P+RDV++W MI GY G Q
Sbjct: 249 HGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGY 308
Query: 252 --------ALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
ALE+F +M PD+ T++ +L+A A LG L +H ++ +
Sbjct: 309 VQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIG 368
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDMY+KCGSI+ A+ VF G+ ++++ W+ +IGGLA HG + M +++
Sbjct: 369 GKL-GVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIE 427
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
RL ++P +ITF+GVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 428 RLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 487
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E+G L K L+ YVLLSN+Y
Sbjct: 488 ELAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAGYNPSSYVLLSNMY 547
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
AS G W V +VR +M + I+K PGCS IE D +
Sbjct: 548 ASCGMWKDVRRVRTMMKERKIQKIPGCSWIELDGRV 583
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 149/326 (45%), Gaps = 26/326 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G I+ A +F +I D YN+++ G Q++ ++A+ L+ +MEK S + P++ T V
Sbjct: 281 GFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIV 340
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + +H IVK F + +LI ++ CG + A ++F G ++
Sbjct: 341 LSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNI 400
Query: 172 VAWSSLTAGYARRGELSMARSLF---DEMPVR-DLVSWNVMITGYAKQGEMEKANELFNE 227
W+++ G A G A + + + ++ D +++ ++ + G +++ F
Sbjct: 401 DHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFEL 460
Query: 228 VPKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ ++ + + M+ G + A + E+M P+DV + LTAC+
Sbjct: 461 MRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEKMPI---EPNDVIWRTFLTACSHHK 517
Query: 283 DLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS---- 336
+ E+G+ V H L + + VL N MYA CG + V M++R +
Sbjct: 518 EFEMGELVAKHLILQAGYNPSSYVLLSN----MYASCGMWKDVRRVRTMMKERKIQKIPG 573
Query: 337 -TWSTLIGGLAFHGFAEESIAMFREM 361
+W L G + H F +SI + + +
Sbjct: 574 CSWIELDGRV--HEFFVDSIEVSKTL 597
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 164/535 (30%), Positives = 273/535 (51%), Gaps = 72/535 (13%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S L K C L Q+ A + G DS + + I + + V I+Y+ +F ++ P
Sbjct: 33 SALLKLCKTHIDLHQVHAHLIQKGLEQDSFLVTQFISASNSV--AHISYSTSVFDRVLSP 90
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
TF++N+++ G +D + LY +M++ P+++TF +LK C G +H
Sbjct: 91 STFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALH 150
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G I++ G + + +V SL+ + G ++ A +FDG ++ +VV+W+++ GY+ G L
Sbjct: 151 GSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLV 210
Query: 189 MARSLFDEMPVRDLVSWN-------------------------------VMITGYAKQGE 217
A+ LFD MP R++ SWN MI GYAK G+
Sbjct: 211 EAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGD 270
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
M A LF + P+RD+++W+A+ISGY G +A++ F EM S +PD + SL+ A
Sbjct: 271 MLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLA 330
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
C+ LG+L++ K V + + ALIDM AKCG++ERA+ +F M RD+ +
Sbjct: 331 CSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLIS 390
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
+ +++ GL+ HG ++++++F M + P ++ F +L ACS AG V+EG YF++MR
Sbjct: 391 YCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMR 450
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
+Y++ P++ HY ++ D EL
Sbjct: 451 CKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLYCDSELA 510
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ RL+ + + +G+YVLLSNIYA+ W V VR M++ ++K PGCS I
Sbjct: 511 EVVASRLIEIEPENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCSWI 565
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 170/505 (33%), Positives = 260/505 (51%), Gaps = 74/505 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C ++ KQIQA +G + L+ ++ G I++++++F++I P
Sbjct: 18 LLENCRSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTI 77
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+N+IIRG ++ +NP +V ++ +M + + P+ T+ F+ KA RL + VH +
Sbjct: 78 SNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLSELRLALAVHCR 137
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
I K G F+RF+ NSLI+ + +CGD+ +A +FD + V+W+++ GYA+ G+L A
Sbjct: 138 IAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSA 197
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +F+ MP RD+VSW+ MI G K GE
Sbjct: 198 RQVFESMPDRDVVSWSSMIDGCVKGGEY-------------------------------G 226
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
AL +FE MR VG + ++VTM+S+L ACA LG LE G+ +H ++D T VL +L
Sbjct: 227 VALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLR-TSL 285
Query: 311 IDMYAKCGSIERAIEVFLG--MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+DMYAKCG+IE AI VF G M DV W+T+IGGLA HG ES+ +F+EMQ L + P
Sbjct: 286 MDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVP 345
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV------------- 415
EIT++ + AC+H G V E +FK + + + P HY DV
Sbjct: 346 DEITYLCLFSACAHGGLVHEAWHFFKSLGKQ-GMVPKSEHYACMVDVLSRAGQLAEAYDF 404
Query: 416 -----------ELGRLAN---------------KRLLNMRKDESGDYVLLSNIYASRGEW 449
LG L N ++L+ + D G Y+ LSN+YA W
Sbjct: 405 IAQMPMEPTASMLGALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLW 464
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIE 474
+ +R+ M+ +KK PG S +E
Sbjct: 465 DNARMMREAMERRGVKKSPGFSFVE 489
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 182/548 (33%), Positives = 275/548 (50%), Gaps = 87/548 (15%)
Query: 13 KKC-----TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
KKC +L KQ L+ G + D+ + L+ S + A YA +F +
Sbjct: 6 KKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSS--LHFAATQYATVVFAQTPH 63
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFC 126
P+ F+YNT+IRG + DAV +Y M + P+ FTF FVLKACTRL Y ++G
Sbjct: 64 PNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLS 123
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H ++K GF+++ FV+ L+ ++ G L A +FD + +VV+W+++ GY G
Sbjct: 124 LHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGC 183
Query: 187 LSMARSLFD---EMPVR-----------------DLVS--W------------NVMITG- 211
A LF EM +R DL S W NV +
Sbjct: 184 FGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATS 243
Query: 212 ----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
YAK G ME+A +F+ + ++DVV W+A+I GY GM K+AL++F EM+ RPD
Sbjct: 244 LVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPD 303
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
M+ + +AC+ LG LE+G L+D ++ + G ALID YAKCGS+ +A EVF
Sbjct: 304 CYAMVGVFSACSRLGALELGNWAR-GLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVF 362
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
GMR +D ++ +I GLA G + +F +M ++ ++P TFVG+L C+HAG V+
Sbjct: 363 KGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVD 422
Query: 388 EGKKYFKLMRDEYNIEPNIRHYG------------------------------------- 410
+G +YF M +++ P I HYG
Sbjct: 423 DGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGG 482
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
+H D +L K+L+ + SG YVLLSNIY++ W+ EK+R ++ ++K P
Sbjct: 483 CRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLP 542
Query: 469 GCSLIEAD 476
GCS +E D
Sbjct: 543 GCSWVEVD 550
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 168/523 (32%), Positives = 268/523 (51%), Gaps = 72/523 (13%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
CT +KQ+ A + NG + S L +LI + V +Y +F ++ P+ F++
Sbjct: 52 CTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWT 111
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK-IVK 133
+IRG A ++ YT+M + + P FTFS + KAC L ++G VH + I+
Sbjct: 112 AMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILI 171
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF + +V NS+I + CG L A R +
Sbjct: 172 GGFASDLYVGNSMIDLYVKCGFLGCA-------------------------------RKV 200
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FDEM RD+VSW +I YAK G+ME A+ LF+++P +D+V+W AM++GY G K+AL
Sbjct: 201 FDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEAL 260
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALID 312
E F++M+ VG D+VT+ +++ACA LG ++ + G + V+ G+ALID
Sbjct: 261 EYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALID 320
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+KCGS + A +VF M++R+V ++S++I G A HG A ++ +F +M + ++RP ++T
Sbjct: 321 MYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVT 380
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+G+L ACSHAG VE+G++ F M + + P+ HY
Sbjct: 381 FIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTM 440
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+HG+ ++ ++A L + + G+Y+LLSNIYAS G W V
Sbjct: 441 PMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVS 500
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
K+RK++ + KK PGCS E + + P S +
Sbjct: 501 KLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEI 543
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 172/495 (34%), Positives = 249/495 (50%), Gaps = 73/495 (14%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
++ LKQIQA + ++ + + + G + YA ++F IT P+TFM+N II
Sbjct: 1 MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
R + S P A Y QM S+ N +TF F+L+AC LL VHG ++K GF
Sbjct: 61 RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFG 120
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ F N+L++ +A C GE+ AR LFD +
Sbjct: 121 SDVFALNALLHVYALC-------------------------------GEIHCARQLFDNI 149
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
P RD VSWN+MI GY K G+++ A +F ++P ++VVSW ++ISG V G + +AL +
Sbjct: 150 PERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCY 209
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
EM++ G D V + SLLTACA+LG L+ G+ +H +L+ V +V+ G AL++MY KC
Sbjct: 210 EMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVI-GCALVNMYVKC 268
Query: 318 GSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
G +E A+ VF L +DV W+ +I G A HG E++ F M+R +RP ITF
Sbjct: 269 GDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTA 328
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------- 410
VL ACS+ G VEEGK+ FK M+ YN+ P+I HYG
Sbjct: 329 VLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMK 388
Query: 411 --------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
+H D LG L+ + D SG Y+ L+ I A+ G+W +VR
Sbjct: 389 PSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVR 448
Query: 457 KLMDDSDIKKQPGCS 471
M + PG S
Sbjct: 449 LKMKSLGVPISPGKS 463
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 173/516 (33%), Positives = 255/516 (49%), Gaps = 106/516 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F++N +I+ + +P A+FL M + + +KF+FS LKAC+RL + G VH
Sbjct: 92 DPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEGTQVH 151
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD------------------ 170
G ++K G + F++N LI + CG L A +FD + D
Sbjct: 152 GFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVE 211
Query: 171 ---------------VVAWSSLTAGYARRGE-LSMARSLFDEMPVRDLVSWNVMITGYAK 214
++ W+S+ GYA+R + +++A LFDEMP +DL+SWN MI GY K
Sbjct: 212 SAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEKDLISWNSMIGGYVK 271
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM-------------------------- 248
G +E A LF+ +P+RDVV+W MI GY G+
Sbjct: 272 HGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHRDVVVYNSMMSGX 331
Query: 249 -----NKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
+ +ALE+F M PD+ +++ +L+A A LG L +H +++ +
Sbjct: 332 VQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAIDMHLYIVEKQFPSS 391
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDMY+KCGSI+ A+ VF G+ + + W+ +IGGLA HG E + M +++
Sbjct: 392 GKL-GVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIE 450
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
R ++P ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 451 RRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSI 510
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E G L K L+ YVLLSN+Y
Sbjct: 511 ELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMY 570
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
AS G W V +VR +M + +I+K PGCS IE D +
Sbjct: 571 ASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRV 606
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 162/526 (30%), Positives = 284/526 (53%), Gaps = 48/526 (9%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
++ K+C+ + L+ A + N D + + I + + ++ A ++ EP+
Sbjct: 778 KIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSF--KRLDLAVSTMTQMQEPN 835
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F+YN + +G +P+ ++ LY +M + S+ P+ +T+S ++KA + G +
Sbjct: 836 VFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASS--FASRFGESLQA 893
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
I K+GF F+ ++ +LI F++ G + A +FD + D +AW+++ + Y R ++
Sbjct: 894 HIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDS 953
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
A SL ++M ++ + N +I GY G +E+A LFN++P +D++SW MI GY
Sbjct: 954 ANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRY 1013
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
++A+ +F +M G PD+VTM ++++ACA LG LE+GK+VH L V V G+A
Sbjct: 1014 REAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQ-NGFVLDVYIGSA 1072
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
L+DMY+KCGS+ERA+ VF + +++ W+++I GLA HGFA+E++ MF +M+ V+P
Sbjct: 1073 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 1132
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
+TFV V AC+HAG V+EG++ ++ M D+Y+I N+ HYG
Sbjct: 1133 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 1192
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+H ++ + +A +L+ + SG Y LL ++YA + W
Sbjct: 1193 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWR 1252
Query: 451 RVEKVRKLMDDSDIKKQ-PGCSLIEADDKAFLQYLFNLKPKPNSGN 495
V ++R M + I+K PG S I D + +LF K +S +
Sbjct: 1253 DVAEIRGRMRELGIEKICPGTSSIRIDKR---DHLFAAADKSHSAS 1295
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 246/464 (53%), Gaps = 73/464 (15%)
Query: 54 AINYAHKMF--VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV 111
+ +YA ++F V+ +P+TF++N+ ++ A+ +P+DA+ L+ ++ + + P+ FT S V
Sbjct: 75 SFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSV 134
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L+AC LL + G +HG + K GF N +++N +++ +A+CG++ A +LF+ + DV
Sbjct: 135 LRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDV 194
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
V W+ + A ++G+ A LF MP R++ SW MI GY
Sbjct: 195 VTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGY------------------- 235
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
V CG K+A+ +F +M G + ++VT++++L ACADLG L++G ++H
Sbjct: 236 ------------VQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIH 283
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ V N LIDMY KCG +E A +VF M +R V +WS +IGGLA HG A
Sbjct: 284 -EYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRA 342
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
EE++ +F +M ++ + P +TF+G+L ACSH G + EG+++F M +Y I P I HYG
Sbjct: 343 EEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGC 402
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
VH +VE+ A K LL +
Sbjct: 403 MVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLN 462
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YV+LSNIYA G W +VRK M D +KK PG S I D
Sbjct: 463 DGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVD 506
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 246/464 (53%), Gaps = 73/464 (15%)
Query: 54 AINYAHKMF--VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV 111
+ +YA ++F V+ +P+TF++N+ ++ A+ +P+DA+ L+ ++ + + P+ FT S V
Sbjct: 75 SFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSV 134
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L+AC LL + G +HG + K GF N +++N +++ +A+CG++ A +LF+ + DV
Sbjct: 135 LRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDV 194
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
V W+ + A ++G+ A LF MP R++ SW MI GY
Sbjct: 195 VTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGY------------------- 235
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
V CG K+A+ +F +M G + ++VT++++L ACADLG L++G ++H
Sbjct: 236 ------------VQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIH 283
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ V N LIDMY KCG +E A +VF M +R V +WS +IGGLA HG A
Sbjct: 284 -EYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRA 342
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
EE++ +F +M ++ + P +TF+G+L ACSH G + EG+++F M +Y I P I HYG
Sbjct: 343 EEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGC 402
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
VH +VE+ A K LL +
Sbjct: 403 MVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLN 462
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YV+LSNIYA G W +VRK M D +KK PG S I D
Sbjct: 463 DGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVD 506
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 170/504 (33%), Positives = 266/504 (52%), Gaps = 74/504 (14%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
+C+ +R LKQI A + G SD+ A ++ + P NYA+ +F +I + F++
Sbjct: 34 RCSTMRELKQIHANLIKTGLISDTVAASRVL-AFCCASPSDRNYAYLVFTRINHKNPFVW 92
Query: 74 NTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
NTIIRG ++S P A+ ++ M S+KP + T+ V KA L G +HG++
Sbjct: 93 NTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRV 152
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+K G E + F+RN++++ + CG L A LF G DVVAW+S+ G A+ G + A+
Sbjct: 153 IKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQ 212
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
LFDEMP R+ VSWN MI+G+ + G + A E+F E+ +RDV
Sbjct: 213 KLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDV------------------ 254
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
+PD TM+SLL ACA LG E G+ +H ++ + ++ ALI
Sbjct: 255 -------------KPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVI-TALI 300
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DMY KCG E ++VF + +S W+++I GLA +G E ++ +F E++R + P +
Sbjct: 301 DMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSV 360
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------------- 411
+F+GVL AC+H+G+V + ++F+LMR++Y IEP+I+HY
Sbjct: 361 SFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKK 420
Query: 412 -------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+G+VE+ + A L N+ DE+ YVL+SN YAS G +
Sbjct: 421 MPVEGDTIIWSSLLAACRKNGNVEMAKRAANCLKNLDPDETCGYVLMSNAYASYGLFEEA 480
Query: 453 EKVRKLMDDSDIKKQPGCSLIEAD 476
+ R LM + ++K+ GCS IE D
Sbjct: 481 VEQRLLMKERQMEKEVGCSSIEVD 504
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 164/460 (35%), Positives = 247/460 (53%), Gaps = 73/460 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F +I D + TII G Q + +A+ +Y M + + PN+ ++
Sbjct: 264 GLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLI 323
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC R + + G HG IV+ GF+ F++ ++I+F+A CG++N A + F+ +K V
Sbjct: 324 SACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVS 383
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+W++L +G+ R G + AR LFDEMP RD+ SW+ MI+GY++ NE P
Sbjct: 384 SWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQ-----------NEQPDL- 431
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
AL++F EM + G +P+++TM+S+ +A A LG L G+ H
Sbjct: 432 -------------------ALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHE 472
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHGF 350
+L + + L+ ALIDMYAKCGSI A+++F ++DR VS W+ +I GLA HG
Sbjct: 473 YILSNSIPLNDNLNA-ALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGH 531
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
A S+ +F ++QR++++P ITF+GVL AC HAG V+ G+KYFK M++ YNIEPNI+HYG
Sbjct: 532 ANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYG 591
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
HG+VE+G A + L +
Sbjct: 592 CMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAAENLAKLDIS 651
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
VLLSNIYA G W+ VR+ M +KK PGCS
Sbjct: 652 HGAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPGCS 691
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 33/354 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+++ A +F K+ Y T++ G AQ+ L+A+ ++ M + PN+ T + V+
Sbjct: 132 GSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVI 191
Query: 113 KACTRLLYRNMGFC-----VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
A Y ++G +H K G E V +L++ + C L A VLFD
Sbjct: 192 SA-----YSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIP 246
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
+ +VV W+ + GY++ G + +AR LF+ +P +D+VSW +I GY + + +A ++
Sbjct: 247 ERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRS 306
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD-------DVTMLSLLTACAD 280
+ + V MI + A+ ++ + R T++ AC +
Sbjct: 307 MLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGE 366
Query: 281 LG----DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
+ E+G K H V NALI + + G IE+A ++F M +RDV
Sbjct: 367 INLAFLQFELGSKDH------------VSSWNALISGFVRNGMIEQARQLFDEMPERDVF 414
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+WS++I G + + + ++ +F EM V+P EIT V V A + G + EG+
Sbjct: 415 SWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGR 468
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 176/376 (46%), Gaps = 39/376 (10%)
Query: 105 KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD 164
+ T LK+C+ LL + G +H + K G N FV+NSLI F+ C ++ A LFD
Sbjct: 52 ELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFD 111
Query: 165 GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG-------- 216
+ +D V+ + + AGY + G L AR LF++MP++ VS+ M+ G A+
Sbjct: 112 TCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGV 171
Query: 217 --EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM---FEEMRSVGERPDDVTM 271
+M A + NEV V+S + + G + C M AL E + V +
Sbjct: 172 FKDMRFAGVIPNEVTLASVISAYSHVGGILNCRM-LHALSFKLGLEALNIVA-----TNL 225
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
+ + C+ LG+ V L D V+ N +++ Y+K G ++ A ++F +
Sbjct: 226 VHMYCVCSSLGNARV-------LFDEIPE-RNVVTWNVMLNGYSKSGLVDLARDLFERIP 277
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+DV +W T+I G E++ M+R M R V P E+ V ++ AC V EG++
Sbjct: 278 AKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQ 337
Query: 392 YFKLMR----DEYN-IEPNIRH-YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
+ ++ D Y+ I+ I H Y G++ L L + KD + L + +
Sbjct: 338 FHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFEL---GSKDHVSSWNALISGFVR 394
Query: 446 RGEWNRVEKVRKLMDD 461
G +E+ R+L D+
Sbjct: 395 NG---MIEQARQLFDE 407
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/507 (34%), Positives = 269/507 (53%), Gaps = 74/507 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L ++ ++ + I A + NG + D + EL+ S S AI+YA ++F P+
Sbjct: 55 LLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKC--HAIDYASRIFQYTHNPNV 112
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++Y +I G S N DA+ LY++M SI P+ + + +LKAC L G VH +
Sbjct: 113 YLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSR 172
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+K G NR VR ++ + CG+L GDA
Sbjct: 173 ALKLGLSSNRLVRLRIMELYGKCGEL--------GDA----------------------- 201
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +F+EMP D+V+ VMI+ Y+ QG +E+A +F+ V ++D V W AMI G+V
Sbjct: 202 RRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMN 260
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ALE F M+ RP++ T++ +L+AC+ LG LE+G+ VH + + + GNAL
Sbjct: 261 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIEL-NLFVGNAL 319
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
I+MY++CGSI+ A VF M+DRDV T++T+I GL+ +G + ++I +FR M ++RPT
Sbjct: 320 INMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTN 379
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
+TFVGVL ACSH G V+ G K F M +Y +EP I HYG
Sbjct: 380 VTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIR 439
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+H ++ELG K L + + +SG YVLLS++YAS G+W
Sbjct: 440 TMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKE 499
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEADDK 478
+VR M ++ ++K+PGCS IE +++
Sbjct: 500 AAQVRAKMKEAGMQKEPGCSSIEVNNE 526
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 158/341 (46%), Gaps = 21/341 (6%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
NR R R L+ KC L +++ D A +I S S G + A
Sbjct: 181 NRLVRLRIMELYGKCGELGDARRV-----FEEMPEDVVASTVMISSYS--DQGLVEEAGA 233
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F ++ DT + +I G +++ A+ + M+ +++PN+FT VL AC++L
Sbjct: 234 VFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGA 293
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+G VH + K+ E N FV N+LI ++ CG ++ A +FD DV+ ++++ +G
Sbjct: 294 LEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISG 353
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELFNEVPK-----R 231
+ G+ A LF M R L NV G + G ++ ++F+ + +
Sbjct: 354 LSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEP 413
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
+ + M+ L G + E ++ +R++ PD + + +LL+AC +LE+G++V
Sbjct: 414 QIEHYGCMVD---LLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVA 470
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
L D G A L +YA G + A +V M++
Sbjct: 471 KVLED--RGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKE 509
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 173/579 (29%), Positives = 280/579 (48%), Gaps = 120/579 (20%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP--GAINYAHKMFVKITEP 68
L ++C ++ L Q+ A + ++G + +S I + +P G + YA ++F +I +P
Sbjct: 18 LLRRCGSVHRLNQLHAHLVVHGVDDVTSQ----ILASYCALPAGGGVWYARQLFDRIPDP 73
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F+YN++IR S P +A+ L M + I PN+FT F+LKAC R+ H
Sbjct: 74 DRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTH 133
Query: 129 GKIVKYGFEFNRFVRN-------------------------------SLIYFHANCGDLN 157
G +VK GF FV N S+I +A G+
Sbjct: 134 GVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTR 193
Query: 158 TASVLFDG---------------------------------------DAKMDVVAWSSLT 178
A LF+G ++D++ ++L
Sbjct: 194 EACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALV 253
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
Y + G+L MA + FD MP ++ VSW M+ AK+ ++ A + F ++P++ ++SWNA
Sbjct: 254 DMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNA 313
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD-- 296
MIS YV G +AL+++ M+ +G PD+ T+ ++L+AC LGDL GK +H + D
Sbjct: 314 MISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNF 373
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
GVA N+L+DMYA+CG ++ AI +F M ++V +W+ +IG LA HG A++++
Sbjct: 374 HNPGVALF---NSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALM 430
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
FR M P EITFV +L AC+H G +E G+ YF+ MR YN++P + HY
Sbjct: 431 FFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLL 490
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
+HG +++G+ K+LL + G +V
Sbjct: 491 GRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFV 550
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
L+SN+ +W ++++RKLM + +KK G S IE +
Sbjct: 551 LISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETN 589
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 164/510 (32%), Positives = 260/510 (50%), Gaps = 73/510 (14%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAIN-YAHKMFVKITEP 68
R+ ++C++L K++ A + I S L +L+ + + ++ Y +F ++ P
Sbjct: 13 RILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTP 72
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ F + +IR A A+ Y+ M K + P FTFS + AC + + +G +H
Sbjct: 73 NPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLH 132
Query: 129 GK-IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
+ ++ GF + +V N++I + CG L A
Sbjct: 133 AQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCA---------------------------- 164
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
R +FDEMP RD++SW +I Y + G+M A +LF+ +P +D+V+W AM++GY
Sbjct: 165 ---RMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNA 221
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLH 306
M ALE+F +R G D+VT++ +++ACA LG + + GV VL
Sbjct: 222 MPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLV 281
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
G+ALIDMY+KCG++E A +VF GMR+R+V ++S++I G A HG A +I +F +M V
Sbjct: 282 GSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGV 341
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------- 410
+P +TFVGVL ACSHAG V++G++ F M Y + P Y
Sbjct: 342 KPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKAL 401
Query: 411 -----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
VHG+ ++ +A+KRL + D G+Y+LLSN YAS G
Sbjct: 402 QLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAG 461
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
W+ V KVRKL+ + ++KK PG S +EA +
Sbjct: 462 RWDDVSKVRKLLREKNLKKNPGWSWVEAKN 491
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/537 (32%), Positives = 262/537 (48%), Gaps = 114/537 (21%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
+ YA +F I EP+ ++NT++RG A S +P+ A+ +Y +M PN ++F F+LK
Sbjct: 13 GLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLK 72
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA---------------------N 152
+C + G +H +++K G +R+V SLI +A +
Sbjct: 73 SCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVS 132
Query: 153 C----------GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV--- 199
C GD +A +FD + DVV+W+++ GY G A LF EM
Sbjct: 133 CTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNV 192
Query: 200 -----------------------RDLVSW-----------------NVMITGYAKQGEME 219
R + SW N +I Y+K G++E
Sbjct: 193 RPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVE 252
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
A LF + +DVVSWN +I GY + K+AL +F+EM GE P+DVT+LS+L ACA
Sbjct: 253 TAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACA 312
Query: 280 DLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
LG +++G+ +H + GV + +LIDMYAKCG IE A +VF M R +S+W
Sbjct: 313 HLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSW 372
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+ +I G A HG A + +F M+ +V P +ITFVG+L ACSH+G ++ G++ FK M
Sbjct: 373 NAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQ 432
Query: 399 EYNIEPNIRHYGV---------------------------------------HGDVELGR 419
+YN+ P + HYG HG++EL
Sbjct: 433 DYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAE 492
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
++L+ + + SG YVLLSNIYA+ G W V +VR +++ +KK PGCS IE D
Sbjct: 493 SFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVD 549
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/507 (34%), Positives = 269/507 (53%), Gaps = 77/507 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C ++ LK I AL + + L ++ +V G ++YA ++F +I +P+TF
Sbjct: 3 EACLTMQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFF 62
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV----- 127
YNT+IRG ++S +P +V L+ QM + + P+ FTF+F+LK +R+ ++ V
Sbjct: 63 YNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRI-DLPLIVASDEI 121
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG ++K GF F+ FV N+LI+ +A G A +F+ DVV+WS L + R GEL
Sbjct: 122 HGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGEL 181
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
+AR +F EMP RD+VSW VM++GYA+ KR
Sbjct: 182 ELARQVFYEMPERDVVSWTVMVSGYAQ--------------AKR---------------- 211
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+++ALE+F EMR VG RPD+V M+S+++AC LGDLE G +VH +D V
Sbjct: 212 -SREALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVH-RYIDENGFGWMVSLC 269
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
NALIDMYAKCG ++ A +VF M + + TW+++I A HG AE++ +F M +R
Sbjct: 270 NALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIR 329
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P +TF+ +L A +H G V++G F+ M+ +Y +E + HYG
Sbjct: 330 PDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYK 389
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
++GDVE+G K+L+ ++ DE G Y+LL +IY + G
Sbjct: 390 LITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGR 449
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEA 475
++R+ MD + KK GCS + A
Sbjct: 450 RAEAIELRRAMDVNGAKKTLGCSWVGA 476
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/507 (34%), Positives = 269/507 (53%), Gaps = 77/507 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C ++ LK I AL + + L ++ +V G ++YA ++F +I +P+TF
Sbjct: 190 EACLTMQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFF 249
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV----- 127
YNT+IRG ++S +P +V L+ QM + + P+ FTF+F+LK +R+ ++ V
Sbjct: 250 YNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRI-DLPLIVASDEI 308
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG ++K GF F+ FV N+LI+ +A G A +F+ DVV+WS L + R GEL
Sbjct: 309 HGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGEL 368
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
+AR +F EMP RD+VSW VM++GYA+ KR
Sbjct: 369 ELARQVFYEMPERDVVSWTVMVSGYAQ--------------AKR---------------- 398
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+++ALE+F EMR VG RPD+V M+S+++AC LGDLE G +VH +D V
Sbjct: 399 -SREALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVH-RYIDENGFGWMVSLC 456
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
NALIDMYAKCG ++ A +VF M + + TW+++I A HG AE++ +F M +R
Sbjct: 457 NALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIR 516
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P +TF+ +L A +H G V++G F+ M+ +Y +E + HYG
Sbjct: 517 PDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYK 576
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
++GDVE+G K+L+ ++ DE G Y+LL +IY + G
Sbjct: 577 LITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGR 636
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEA 475
++R+ MD + KK GCS + A
Sbjct: 637 RAEAIELRRAMDVNGAKKTLGCSWVGA 663
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 30/206 (14%)
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE-----VPKRDVVSWNA 238
RGEL + R + M VSW VM++ YA+ + ELF E V DVV+
Sbjct: 102 RGELELPRQVM--MKYLGDVSWTVMVSMYAQAKRSREPLELFREIRDVRVRPTDVVTMGV 159
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
Y + L+ + + + P ++ S+ AC + L K +H
Sbjct: 160 DYDKY-------KTLKSYISNKVMHMLPTSQSLASMAEACLTMQAL---KLIHALAFRAN 209
Query: 299 SGVAKVLHGNALI-------DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
LH +AL+ + G + A +F + + ++TLI G +
Sbjct: 210 ------LHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSP 263
Query: 352 EESIAMFREMQRLKVRPTEITFVGVL 377
+S+ +F +M+R V P TF +L
Sbjct: 264 SQSVQLFNQMRRNCVDPDGFTFTFLL 289
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 165/483 (34%), Positives = 250/483 (51%), Gaps = 77/483 (15%)
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N ++ G A P A +Y ++ K P+ FTF VLK+C + + G VHG I+
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K GF N +V NSL++F++ C AS +FD DVV+W+ + +GY R G A
Sbjct: 62 KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121
Query: 193 LFDEMPVRD------------------------------------LVSWNVMITGYAKQG 216
LF M V L N ++ Y K G
Sbjct: 122 LFLRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCG 181
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
+ A ++F+E+ ++D+VSW ++ISG V C K+ALE+F++M+S G PD + + S+L+
Sbjct: 182 CLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLS 241
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
ACA LG L+ G+ VH +D + + G A++DMYAKCG IE ++++F GM ++V
Sbjct: 242 ACARLGALDYGRWVH-EHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVL 300
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
TW+ L+ GLA HG A + + +F EM R+ +RP E+TF+ +L AC H G V EG++YF M
Sbjct: 301 TWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWM 360
Query: 397 R-DEYNIEPNIRHYGV---------------------------------------HGDVE 416
+ +YN+ P + HYG +G+ E
Sbjct: 361 KGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTE 420
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
L + R + + +SG YVLLSNI+A W+ V ++R+LM + IKK PG ++IE D
Sbjct: 421 LPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIELD 480
Query: 477 DKA 479
KA
Sbjct: 481 GKA 483
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 120/250 (48%), Gaps = 17/250 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F ++ E D + +II G Q P +A+ L+ M+ I+P+ + VL
Sbjct: 181 GCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVL 240
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC RL + G VH I + +++ + +++ +A CG + + +F+G +V+
Sbjct: 241 SACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVL 300
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR-----DLVSWNVMITGYAKQGEMEKANELFN- 226
W++L G A G LF+EM VR + V++ ++T G + + + FN
Sbjct: 301 TWNALLNGLAMHGHAYKVLELFEEM-VRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNW 359
Query: 227 ------EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
+P R + + M+ + +ALE+ + M PD M +LL+AC +
Sbjct: 360 MKGQQYNLPPR-LEHYGCMVDLLCRARLLDEALELTKAMPM---SPDVRIMGALLSACKE 415
Query: 281 LGDLEVGKKV 290
G+ E+ +++
Sbjct: 416 NGNTELPQEI 425
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 177/553 (32%), Positives = 277/553 (50%), Gaps = 85/553 (15%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
T RH + KC L Q +++ +G + L +L+ S + + Y +F
Sbjct: 6 TLRHSILCCFHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLRSAT----KDLGYTLLLF 61
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
++ P F++NTI+R + S P + Y+++ + P++ TF +LKA ++L N
Sbjct: 62 DRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNEN 121
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
F + IVK+G +F+ FV+NSL+ A+CG ++ + LF AK DVV+W++L G
Sbjct: 122 -PFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCL 180
Query: 183 RRGELSMARSLFDEMP--------------------VRDL---------------VSWNV 207
R G A F EM +RD+ V W+V
Sbjct: 181 RNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDV 240
Query: 208 -----MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
++ Y+K G + A ++FNE+P R++VSW A+I+GYV C K+AL++F+EM
Sbjct: 241 YVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIE 300
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G P+ T+ S LTACA LG L+ G+ +H + G+ L G AL+DMY+KCG ++
Sbjct: 301 GIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKL-GTALVDMYSKCGCVDE 359
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A+ VF + +DV W+ +I GLA G A S+ +F +M R +V+P +TF+GVL AC+H
Sbjct: 360 ALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAH 419
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
G V+EG + F+LM +Y +EPN+ HYG
Sbjct: 420 GGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWG 479
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
+H ELG L+ ++ SG Y+LL+N+Y+ +W VR+LM
Sbjct: 480 ALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKG 539
Query: 464 IKKQPGCSLIEAD 476
+ K P CS IE +
Sbjct: 540 VDKSPACSWIEVN 552
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 150/344 (43%), Gaps = 26/344 (7%)
Query: 30 INGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQ 84
++GF +S + +Y GS ++ G + A K+F ++ + + +I G Q
Sbjct: 226 VHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCN 285
Query: 85 NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRN 144
+A+ ++ +M I+PN+ T + L AC +L + G +H + + N +
Sbjct: 286 RYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGT 345
Query: 145 SLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS 204
+L+ ++ CG ++ A ++F+ DV W+++ G A RG+ + +LF +M +R V
Sbjct: 346 ALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQM-IRSRVQ 404
Query: 205 WN-----VMITGYAKQGEMEKANELFNEVP-----KRDVVSWNAMISGYVLCGMNKQALE 254
N +++ A G +++ ELF + + +V + M+ G ++A++
Sbjct: 405 PNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIK 464
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV--HCTLLDMTSGVAKVLHGNALID 312
E M P +L + C E+G+ + H L +L L +
Sbjct: 465 FIESMPM---EPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYIL----LAN 517
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+Y++C E A V M+ + V S + +G E IA
Sbjct: 518 LYSRCQKWEAAANVRRLMKGKGVDK-SPACSWIEVNGVIHEFIA 560
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 170/459 (37%), Positives = 245/459 (53%), Gaps = 85/459 (18%)
Query: 65 ITEPDT-FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC---TRLLY 120
+ E DT +N +I G + ++ + M + P T+ VL AC TR +
Sbjct: 81 VGECDTPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVL 140
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+G VHG++V G + V N+L+ +A C D+ +A +FDG
Sbjct: 141 --LGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDG--------------- 183
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
M VR +VSW +++G A+ G++++A +LF+ +P+RD VSW AMI
Sbjct: 184 ----------------MQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMI 227
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LD 296
GYV ++ALEMF EM+ D+ TM+S++TACA LG LE+G+ V + +
Sbjct: 228 DGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIK 287
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
M + V GNALIDMY+KCGSIERA++VF GM RD TW+ +I GLA +G+ EE+I
Sbjct: 288 MDAFV-----GNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIE 342
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
MF M R+ P E+TF+GVL AC+HAG V++G+++F M + YNI PN+ HYG
Sbjct: 343 MFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLL 402
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
VHG+ E+G L +RLL + + S Y+
Sbjct: 403 GRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYI 462
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
LLSNIYA W V ++R + + IKK+PGCSLIE D
Sbjct: 463 LLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMD 501
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 128/280 (45%), Gaps = 18/280 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F ++ E DT + +I G + +A+ ++ +M+ ++ ++FT V+
Sbjct: 203 GQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVI 262
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC +L MG V + + G + + FV N+LI ++ CG + A +F G D
Sbjct: 263 TACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKF 322
Query: 173 AWSSLTAGYARRGELSMARSLFDEM----PVRDLVSWNVMITGYAKQGEMEKANELF--- 225
W+++ G A G A +F M D V++ ++T G ++K E F
Sbjct: 323 TWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSM 382
Query: 226 ----NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
N P +VV + +I G +AL+ ++M P+ +LL AC
Sbjct: 383 IEAYNIAP--NVVHYGCIIDLLGRAGKITEALDTIDQMPMT---PNSTIWGTLLAACRVH 437
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
G+ E+G+ V LL++ + V L ++YAKC E
Sbjct: 438 GNSEIGELVAERLLELDPENSMVY--ILLSNIYAKCNRWE 475
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 166/481 (34%), Positives = 251/481 (52%), Gaps = 77/481 (16%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F +NT+IR A + +P +A+ + M + +++P+ +TF VLKAC + +G VH
Sbjct: 77 DAFPWNTLIRLHAPA-SPRNALAYFACMRRAAVEPDAYTFPAVLKACACGV---LGLPVH 132
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+ V+ G + + F RN+L+ F+ GD + +FD A+ D+V+W+S+ AGY GEL
Sbjct: 133 AEAVRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFDHGAR-DLVSWNSMVAGYVACGELE 191
Query: 189 MA--------------------------------RSLFDEMPVRDLVSWNVMITGYAKQG 216
+A R LFDE P RDLV W MI GYA+QG
Sbjct: 192 LAQELFDGMPLRDAFSWATMIDAYGKRSGGVDRARELFDETPNRDLVCWCSMIDGYARQG 251
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
M++A LF E+P+R+V+SW+ ++ GYV CG +ALE+F+ M G +PD V + T
Sbjct: 252 RMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQRMLRCGIKPDRVAAVGAFT 311
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
ACA LG LE G+ +H + L+ + V+ ALIDMY KCG ++ +F M D+ V
Sbjct: 312 ACAQLGALEQGRWLH-SYLEKKKVLFDVVVQTALIDMYMKCGRLDLGKLIFESMPDKSVV 370
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
TW+ +I GL H ++ +F +M+ +++ + VL AC+HAG + EG F M
Sbjct: 371 TWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVLTACTHAGLISEGLGIFHRM 430
Query: 397 RDEYNIEPNIRHYGV---------------------------------------HGDVEL 417
R ++ ++P + HYG H VEL
Sbjct: 431 RKDFGMDPKVEHYGALVDLLGRAGHLDHARHAIETMPMEPTPELWGSLLAACRSHRCVEL 490
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
L+ +RL ++ D+ G YVLLSNIYA G W+ V ++R+LM +KK G S+IE D
Sbjct: 491 AELSVERLASLGADDFGVYVLLSNIYADEGMWDGVFRIRRLMSAEGMKKDIGRSVIEVDG 550
Query: 478 K 478
+
Sbjct: 551 Q 551
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 172/513 (33%), Positives = 255/513 (49%), Gaps = 106/513 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D +++N +I+ + +P A+ L+ M + + +KF+ S V+KAC+RL + G +H
Sbjct: 51 DPYLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIH 110
Query: 129 GKIVKYGFEFNRFVRNSLIYFH-------------------------------ANCGDLN 157
G + K G + F++N LI + CG +
Sbjct: 111 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIE 170
Query: 158 TASVLFDGDAK--MDVVAWSSLTAGYARRGE-LSMARSLFDEMPVRDLVSWNVMITGYAK 214
+AS LFD + ++++W+SL +GYA+ E + +A LF EMP +DL+SWN MI GY K
Sbjct: 171 SASELFDLMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVK 230
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA---------------------- 252
G +E A +LF+ VP+RDVV+W MI GY G QA
Sbjct: 231 HGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGY 290
Query: 253 ---------LEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
LE+F +M PD+ T++ +L+A A LG L +H +++ +
Sbjct: 291 VQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLG 350
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDMY+KCGSI+ A+ VF G+ ++ + W+ +IGGLA HG E + M +++
Sbjct: 351 GKL-GVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 409
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
R ++P +ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 410 RRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 469
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E G L K L+ YVLLSN+Y
Sbjct: 470 ELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQADYNPSSYVLLSNMY 529
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
AS G W V +VR +M + I+K PGCS IE D
Sbjct: 530 ASFGMWKDVRRVRTMMKERKIEKIPGCSWIELD 562
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 190/587 (32%), Positives = 285/587 (48%), Gaps = 118/587 (20%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGA-INYAHKMFVK----- 64
L KKC L + QI A + GF ++ ++I S S + I +A +F +
Sbjct: 21 LLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFARFIFFRHHAFE 80
Query: 65 ------ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
E D F++N II+ + +P +A++L + M + +KFT S VLKAC+R+
Sbjct: 81 FDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRV 140
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC------------------------- 153
G +HG + K F + F++N LI F+ C
Sbjct: 141 GLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMI 200
Query: 154 ------GDLNTASVLFDGD-------------------------------AKM---DVVA 173
G ++ A V+FD AKM D+++
Sbjct: 201 DGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLIS 260
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233
W+S+ G + G + A+ LFD MP RD+VSW MI GYAK G ++ A LF+E+P+RDV
Sbjct: 261 WNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDV 320
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHC 292
V++NAM+ GYV G +AL +F M+S G D+ T+L L+A A LG ++ G +H
Sbjct: 321 VAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHR 380
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ ++ + L G ALIDMY+KCGSIE A+ VF ++++ V W+ +IGGLA HG E
Sbjct: 381 FIEEIGFSLDGRL-GVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGE 439
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+ EM+R++V P +ITF+G+L AC HAG V+EG F+LMR + +EP ++HYG
Sbjct: 440 LAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCM 499
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
H +G+ + L+ +
Sbjct: 500 VDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSP 559
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
YVL SN+YA G+WN V KVR +M ++KK PGCS IE + +
Sbjct: 560 SSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGHVY 606
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 179/526 (34%), Positives = 266/526 (50%), Gaps = 94/526 (17%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S+ + C R LKQ+ A+ G D E+I I+YA +F ++ EP
Sbjct: 23 SKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVI-KFCAFSSRDIDYARAVFRQMPEP 81
Query: 69 DTFMYNTIIRGSAQSQNPL---DAVFLYTQMEKCS--IKPNKFTFSFVLKACTRLLYRNM 123
+ F +NTI+R A++ + +A+ L++ M C +KPN+FTF VLKAC R
Sbjct: 82 NCFCWNTILRILAETNDEHLQSEALMLFSAM-LCDGRVKPNRFTFPSVLKACARASRLRE 140
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF-------DGDAKMD------ 170
G +HG IVK+GF + FV ++L+ + C + A LF DG +M+
Sbjct: 141 GKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQ 200
Query: 171 ---VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
VV W+ + G R G++ A++LFDEMP R +VSWNVMI+GYA+ G
Sbjct: 201 DGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHF--------- 251
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+A+ +F+EM+S P+ VT++S+L A A +G LE+G
Sbjct: 252 ----------------------IEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
K +H + VL G+AL+DMY+KCGSI++A++VF + R+ TWS +IG A
Sbjct: 290 KWIHLYAGKNKVEIDDVL-GSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAM 348
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
HG AE++I F M + V P ++ ++G+L ACSHAG VEEG+ +F M ++P I
Sbjct: 349 HGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIE 408
Query: 408 HYG---------------------------------------VHGDVELGRLANKRLLNM 428
HYG +H ++++G + L+ +
Sbjct: 409 HYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMEL 468
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+SG YV LSN+YAS G W V +VR M DI+K PGCS IE
Sbjct: 469 APHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIE 514
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 185/589 (31%), Positives = 272/589 (46%), Gaps = 131/589 (22%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---- 66
L + C + Q+ A + G+ +SS ++I + +I+ HK V+
Sbjct: 20 LLRHCETQNDVNQVHARIIKTGYLKNSSLTTKIILN-------SISSPHKPLVEFARYVF 72
Query: 67 --------------EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
+ D F++N +I+ + P+ A+ L+ M + +KF+FS +L
Sbjct: 73 FTRYAVQRIRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLIL 132
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC R+ G +HG ++K N F+ N LI + CGD+ A +FD D V
Sbjct: 133 KACARVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSV 192
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPV--------------------------------- 199
+++S+ GY + G + +AR LFD MP+
Sbjct: 193 SYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMP 252
Query: 200 -RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK-------- 250
RDLVSWN +I G+AK G +E A+ LFN +PKRDV+SW+ MI GY G K
Sbjct: 253 ERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDE 312
Query: 251 -----------------------QALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEV 286
+ALE+F EM R PD+ T++ L+A + LG +E
Sbjct: 313 MPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEK 372
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
+H L+ V + ALIDMY+KCGSIE AI +F G+ + + W+ +I G+A
Sbjct: 373 AASMHNYFLENGISVTGKV-AVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMA 431
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
+G + + M EM RL V+P ITF+GVL AC+HAG V+EG F+LMR + +EP +
Sbjct: 432 RNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKL 491
Query: 407 RHYGV---------------------------------------HGDVELGRLANKRLLN 427
+HYG H + +G L K L+
Sbjct: 492 QHYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMT 551
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
M S YVLLSNIYA G W+ KVR +M ++ K PGCS IE +
Sbjct: 552 MDSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELE 600
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 172/508 (33%), Positives = 258/508 (50%), Gaps = 74/508 (14%)
Query: 8 SSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
SS K C ++ KQIQA +G + L+ ++ G I++++++F++I
Sbjct: 8 SSPSLKNCRSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPS 67
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P +N+IIRG ++ +NP +V ++ +M + + P+ T+ FV KA RL + V
Sbjct: 68 PTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAV 127
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H +I K G F+RF+ NSLI+ + +CGD+ +A +FD + V+W+++ GYA+ G+L
Sbjct: 128 HCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDL 187
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
A +F MP RD+VSW+ MI G K GE
Sbjct: 188 DSAHQVFXSMPDRDVVSWSSMIDGCVKGGEY----------------------------- 218
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
AL +FE MR VG + + VTM+S+L ACA LG LE G+ +H ++D T VL
Sbjct: 219 --GVALAIFERMRVVGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLVLR- 275
Query: 308 NALIDMYAKCGSIERAIEVFLG--MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
+L+DMYAKCG+IE AI VF G M DV W+T+IGGLA HG ES+ +F+EMQ L
Sbjct: 276 TSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVXESLELFKEMQVLG 335
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV---------- 415
+ P EIT++ + AC+H G V E +FK + + + P HY DV
Sbjct: 336 IVPDEITYLCLFSACAHGGLVHEAWHFFKSLGKQ-GMVPKSEHYACMVDVLSRAGQLAEA 394
Query: 416 --------------ELGRLAN---------------KRLLNMRKDESGDYVLLSNIYASR 446
LG L N ++L+ + D G Y+ LSN+YA
Sbjct: 395 YDFIAQMPMEPTASMLGALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGV 454
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
W+ +R+ M+ +KK PG S +E
Sbjct: 455 KLWDNARMMREAMERRGVKKSPGFSFVE 482
>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
Length = 614
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 185/584 (31%), Positives = 277/584 (47%), Gaps = 115/584 (19%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYS-GSVVIPGAINYAHKMF----VK 64
+L C N + +I A + GF +S+ +++ + P +A +F V
Sbjct: 18 QLVGSCKNSNDVGKIHARLITTGFIKNSNLTTKIVVAFADSRRPYLAEFARYVFREYHVC 77
Query: 65 ITEP----DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
P D F++N +I+ + +P A+ + M + I +KF+FS VLKAC+RL +
Sbjct: 78 SFAPGDVKDPFLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDKFSFSLVLKACSRLGF 137
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
G +HG + K G + F++N LI + CG L A +FD + D V+++S+ G
Sbjct: 138 LKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDG 197
Query: 181 YARRGELSMARSLFD----------------------------------EMPVRDLVSWN 206
Y + G + AR LFD EMP +DL+SWN
Sbjct: 198 YIKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWN 257
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM------------------ 248
+I GY K G ME A +LF+ +P+RDVV+W MI GY G
Sbjct: 258 SLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVA 317
Query: 249 -------------NKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
+ +ALE+F +M PD+ T++ +L+A A LG L +H +
Sbjct: 318 YNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYI 377
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
++ + L G ALIDMY+KCGSI++A+ VF G+ ++ + W+ +IGGLA HG E +
Sbjct: 378 VEKQFYLGGKL-GVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESA 436
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--- 411
+ E++R + P ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 437 FNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 496
Query: 412 ------------------------------------HGDVELGRLANKRLLNMRKDESGD 435
H + E+G L K L+
Sbjct: 497 LLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIGELVAKHLILQAGYNPSS 556
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
YVLLSN+YAS G W V VR +M + ++K PGCS IE D +
Sbjct: 557 YVLLSNMYASFGRWKDVRNVRTMMKERKLQKVPGCSWIELDGRV 600
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 146/320 (45%), Gaps = 26/320 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G ++ A +F ++ D YN+++ G Q+++ ++A+ +++ MEK S + P++ T V
Sbjct: 298 GFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIV 357
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + +H IV+ F + +LI ++ CG + A +F+G +
Sbjct: 358 LSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSI 417
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNE 227
W+++ G A G A ++ E+ R D +++ ++ + G +++ F
Sbjct: 418 DHWNAMIGGLAIHGLGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFEL 477
Query: 228 VPKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ ++ + + M+ CG + A + EEM P+DV + LTAC
Sbjct: 478 MRRKHKIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMPI---EPNDVIWRTFLTACNHHK 534
Query: 283 DLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS---- 336
+ E+G+ V H L + + VL L +MYA G + V M++R +
Sbjct: 535 EFEIGELVAKHLILQAGYNPSSYVL----LSNMYASFGRWKDVRNVRTMMKERKLQKVPG 590
Query: 337 -TWSTLIGGLAFHGFAEESI 355
+W L G + H F +SI
Sbjct: 591 CSWIELDGRV--HEFFVDSI 608
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/579 (29%), Positives = 280/579 (48%), Gaps = 120/579 (20%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP--GAINYAHKMFVKITEP 68
L ++C ++ L Q+ A + ++G + +S I + +P G + YA ++F +I +P
Sbjct: 18 LLRRCGSVHRLNQLHAHLVVHGVDDVTSQ----ILASYCALPAGGGVWYARQLFDRIPDP 73
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F+YN++IR S P +A+ L M + I PN+FT F+LKAC R+ H
Sbjct: 74 DRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTH 133
Query: 129 GKIVKYGFEFNRFVRN-------------------------------SLIYFHANCGDLN 157
G +VK GF FV N S+I +A G+
Sbjct: 134 GVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTR 193
Query: 158 TASVLFDG---------------------------------------DAKMDVVAWSSLT 178
A LF+G ++D++ ++L
Sbjct: 194 EACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALV 253
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
Y + G+L MA + FD MP ++ VSW M+ AK+ ++ A + F ++P++ ++SWNA
Sbjct: 254 DMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNA 313
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD-- 296
MIS YV G +AL+++ M+ +G PD+ T+ ++L+AC LGDL GK +H + D
Sbjct: 314 MISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNF 373
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
GVA N+L+DMYA+CG ++ AI +F M ++V +W+ +IG LA HG A++++
Sbjct: 374 HNPGVALF---NSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALM 430
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
FR M P EITFV +L AC+H G +E G+ YF+ MR YN++P + HY
Sbjct: 431 FFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLL 490
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
+HG +++G+ K+LL + G +V
Sbjct: 491 GRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFV 550
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
L+SN+ +W ++++RKLM + +KK G S IE +
Sbjct: 551 LISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETN 589
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 173/507 (34%), Positives = 269/507 (53%), Gaps = 77/507 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C ++ LK I A ++ + L ++ +V G ++YA ++F +I +P+TF
Sbjct: 249 EACLAMQALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFF 308
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV----- 127
YNT+IRG ++S +P +V L+ QM + + P+ FTF+F+LK +R+ ++ V
Sbjct: 309 YNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRI-DLPLIVASDEI 367
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG ++K GF F+ FV N+LI+ +A G A +F+ DVV+WS L + R GEL
Sbjct: 368 HGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGEL 427
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
+AR +FDEMP RD+VSW VM++GYA+ KR
Sbjct: 428 ELARQVFDEMPERDVVSWTVMVSGYAQ--------------AKR---------------- 457
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+++ALE+F EMR VG RPD+V M+ +++AC LGDLE G +VH +D V
Sbjct: 458 -SREALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGFEVH-RYIDENGFGWMVSLC 515
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
NALIDMYAKCG ++ A +VF M + + TW+++I A HG AE++ +F M +R
Sbjct: 516 NALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIR 575
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P +TF+ +L A +H G V++G F+ M+ +Y +E + HYG
Sbjct: 576 PDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYK 635
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
++GDVE+G K+L+ ++ DE G Y+LL +IY + G
Sbjct: 636 LITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGR 695
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEA 475
++R+ MD + KK GCS + A
Sbjct: 696 RAEAIELRRAMDVNGAKKTLGCSWVGA 722
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/418 (24%), Positives = 191/418 (45%), Gaps = 57/418 (13%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C ++ LK I A ++ + L ++ +V G ++YA ++F +I +P+TF
Sbjct: 95 EACLAMQALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFF 154
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
YNT+IRG ++S +P +V L+ QM + + P+ FTF+F+LK +R+ +I
Sbjct: 155 YNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIH 214
Query: 133 KYGFEFNR------FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
G ++++ ++ N +++ L T+ L +A +L +
Sbjct: 215 GAGVDYDKYKTLKSYISNKVMHM------LPTSQSL--ASMAEACLAMQAL--------K 258
Query: 187 LSMARSLFDEMPVRDLVSWNVM-ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
L AR+ + LV + + G + A+ LF+++ + + +N +I GY
Sbjct: 259 LIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSK 318
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA----DLGDLEVGKKVHCTLLDM---- 297
Q++++F +MR PD T LL + DL + ++H +L +
Sbjct: 319 SSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCF 378
Query: 298 -------------TSGV-------------AKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
GV A V+ + L+ + + G +E A +VF M
Sbjct: 379 HLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFDEMP 438
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+RDV +W+ ++ G A + E++ +FREM+ + VRP E+ V V+ AC+ G +E G
Sbjct: 439 ERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVISACTSLGDLETG 496
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 172/532 (32%), Positives = 275/532 (51%), Gaps = 81/532 (15%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ + GF +L +LI + + YA+ +F E D +N+++R S P
Sbjct: 1 MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60
Query: 88 DAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL 146
A+ YT+M E+ P++FTF +LK C LL +G +HG++VKY + ++ +L
Sbjct: 61 RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
Query: 147 IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF----------DE 196
+ +A CGDL +A LF+ + V W+S+ +GY + + A L+ DE
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
Query: 197 MPVRDLVSW-----------------------------NVMITGYAKQGEMEKANELFNE 227
+ + LVS + ++ YAK G+++ A ++F++
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDK 240
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEV 286
+ +DV +W+A+I GYV + +AL++F E+ RP++VT+L++++ACA LGDLE
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLET 300
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G+ VH + G + L+ N+LIDM++KCG I+ A +F M +D+ +W++++ G A
Sbjct: 301 GRWVHDYITRTQKGHSVSLN-NSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFA 359
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HG E++A FR MQ ++P EITF+GVL ACSHAG V+EGKK F + Y +
Sbjct: 360 LHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKS 419
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HYG V+ ++ELG A + LL
Sbjct: 420 EHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLK 479
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
+ G Y+LLSNIYA R WN V+KVR+LM++ I+K PGCS + D+ A
Sbjct: 480 LEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIA 531
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 182/536 (33%), Positives = 268/536 (50%), Gaps = 83/536 (15%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+ LKQI A + G D +++ S+ G++ YA +F +I P ++ N+II
Sbjct: 1 MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
RG +A+ Y +M + P+++TF + K+C + G +H K GF
Sbjct: 61 RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRN---SSEGKQIHCHSTKLGFA 117
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ + +N+L+ ++NCG L +A +FD VV+W+++ +A+ + + A LFD M
Sbjct: 118 SDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRM 177
Query: 198 ---------------------PVRDL-------------------VSWNVMITGYAKQGE 217
RDL V V++ Y K G
Sbjct: 178 MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGC 237
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
++ A +LF++ ++++ SWN MI+G+V ++AL +F EM++ G + D VTM SLL A
Sbjct: 238 VQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLA 297
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
C LG LE+GK +H + V L G AL+DMYAKCGSIE AI+VF M ++DV T
Sbjct: 298 CTHLGALELGKWLHAYIKKQRIDVDVAL-GTALVDMYAKCGSIETAIQVFHEMPEKDVMT 356
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+ LI GLA G AE ++ F EM V+P ITFVGVL ACSHAG V+EG +F M
Sbjct: 357 WTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMS 416
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
D Y I+P I HYG +HG++E
Sbjct: 417 DTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAA 476
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
A K+LL + SG YVLLSNIY S +W ++ R+LM + ++K PGCS IE
Sbjct: 477 ERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIE 532
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 179/526 (34%), Positives = 265/526 (50%), Gaps = 94/526 (17%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S+ + C R LKQ+ A+ G D E+I I+YA +F ++ EP
Sbjct: 23 SKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVI-KFCAFSSRDIDYARAVFRQMPEP 81
Query: 69 DTFMYNTIIRGSAQSQNPL---DAVFLYTQMEKCS--IKPNKFTFSFVLKACTRLLYRNM 123
+ F +NTI+R A++ + +A+ L++ M C +KPN+FTF VLKAC R
Sbjct: 82 NCFCWNTILRVLAETNDEHLQSEALMLFSAM-LCDGRVKPNRFTFPSVLKACARASRLRE 140
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF-------DGDAKMD------ 170
G +HG IVK+GF + FV ++L+ + C + A LF DG +M+
Sbjct: 141 GKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQ 200
Query: 171 ---VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
VV W+ + G R G++ A++LFDEMP R +VSWNVMI+GYA+ G
Sbjct: 201 DGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHF--------- 251
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+A+ +F+EM+S P+ VT++S+L A A +G LE+G
Sbjct: 252 ----------------------IEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG 289
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
K +H + VL G+AL+DMY+KCGSI+ A++VF + R+ TWS +IG A
Sbjct: 290 KWIHLYAGKNKIEIDDVL-GSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAM 348
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
HG AE++I F M + V P ++ ++G+L ACSHAG VEEG+ +F M ++P I
Sbjct: 349 HGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIE 408
Query: 408 HYG---------------------------------------VHGDVELGRLANKRLLNM 428
HYG +H ++++G + L+ +
Sbjct: 409 HYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMEL 468
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+SG YV LSN+YAS G W V +VR M DI+K PGCS IE
Sbjct: 469 APHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIE 514
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 166/513 (32%), Positives = 257/513 (50%), Gaps = 106/513 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F++N +I+ + +P A+ L+ M + + +KF+ S VLKAC+RL + G +H
Sbjct: 85 DPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGMQIH 144
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD------------------------ 164
G + K G + +++N LI + CG L A +FD
Sbjct: 145 GFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIE 204
Query: 165 ---------GDAKMDVVAWSSLTAGYARRGE-LSMARSLFDEMPVRDLVSWNVMITGYAK 214
K ++++W+ + +GYA+R + +++A+ LFDEMP +DL+SWN +I GY K
Sbjct: 205 SARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVK 264
Query: 215 QGEMEKANELFNEVPKRDVVSW-------------------------------NAMISGY 243
G ME A LFN++PKRDVV+W N+MI+GY
Sbjct: 265 HGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGY 324
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
V +K+A+ +F +M PD+ T++ +L+A A LG L +H ++D +
Sbjct: 325 VQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLG 384
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALID Y+KCGSI++++ VF + ++ + W+ +IGGLA HG E + M +++
Sbjct: 385 GKL-GVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 443
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
+ ++P +ITF+GVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 444 KRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSI 503
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E G L K L +VLLSN+Y
Sbjct: 504 ELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSNMY 563
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
AS G W V +VR M + ++K PGCS IE D
Sbjct: 564 ASFGMWKEVRRVRTTMKERKLRKIPGCSWIELD 596
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 175/536 (32%), Positives = 268/536 (50%), Gaps = 113/536 (21%)
Query: 52 PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV 111
P I A+++F +I P +N +IRG +Q+ P++A+ Y M ++ N T+ F+
Sbjct: 743 PTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFL 802
Query: 112 LKACTRLLYRNMG-FCVHGKIVKYGFEFNRFVRN-------------------------- 144
LKAC R+ N+ VH +++K GF+ + FV N
Sbjct: 803 LKACARI--SNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERD 860
Query: 145 -----SLIYFHANCGDLNTASVLFD--------GDA------------------------ 167
SLI + C + V+F+ GDA
Sbjct: 861 LVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIE 920
Query: 168 -------KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK 220
++DV ++L Y RR + +AR +FD M R++VSWN MI GY K G +
Sbjct: 921 YIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVA 980
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A +LF+++P RDV+SW +MIS Y G +A+ +F+EM +PD++T+ S+L+ACA
Sbjct: 981 ARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAH 1040
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
+G L+VG+ VH + A + GNALIDMY KCG++E+ + VF M RD +W++
Sbjct: 1041 IGALDVGEAVHEYIRKYDVN-ADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTS 1099
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
+I GLA +G A+ ++ +F M R VRPT TFVGVL+AC+HAG V++G +YF+ M Y
Sbjct: 1100 VIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVY 1159
Query: 401 NIEPNIRHYG---------------------------------------VHGDVELGRLA 421
+ P ++HYG VHG++ L +A
Sbjct: 1160 GLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIA 1219
Query: 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
K+LL SG+Y+L SN YA W V K+R+LM++S++ K S +E +D
Sbjct: 1220 TKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEIND 1275
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 126/271 (46%), Gaps = 14/271 (5%)
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
+P + +N++ + + KANELF ++P+ + WN MI G+ +A+ +
Sbjct: 725 LPTDPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNY 784
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
M S +++T LL ACA + ++ VH +L + + + NALI YA
Sbjct: 785 NLMYSQALFGNNLTYPFLLKACARISNVSC-TTVHARVLKLGFD-SDLFVSNALIHGYAG 842
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
+ A +VF M +RD+ +W++LI G E + +F EM+ V+ +T V V
Sbjct: 843 FCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKV 902
Query: 377 LVACSHAGK---VEEGKKYF---KLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRK 430
++AC+ G+ V+ +Y K+ D Y I YG V+L R R+ + +
Sbjct: 903 VLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLAR----RVFDRMR 958
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
D + V + + G+ + RKL DD
Sbjct: 959 DR--NMVSWNAMIMGYGKAGNLVAARKLFDD 987
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 158/448 (35%), Positives = 240/448 (53%), Gaps = 72/448 (16%)
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
+ P+K +FS +L++C +G H +I+K GFE++ ++ L+ F+A GDL A
Sbjct: 6 VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAK 65
Query: 161 VLFDGDAKMDVVA-------------------------------WSSLTAGYARRGELSM 189
+F G + DVVA W+S+ Y + G+++
Sbjct: 66 RVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINS 125
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV-PKRDVVSWNAMISGYVLCGM 248
AR +FD PV+D+VSWN +I GY K ++ A ELF + R+ V+WN MIS YV CG
Sbjct: 126 ARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGE 185
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
A+ MF++M+S +P +VTM+SLL+ACA LG L++G+ +H + + VL GN
Sbjct: 186 FGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVL-GN 244
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
ALIDMY KCG++E AI+VF G+ +++ W+++I GL +G EE+IA F M++ ++P
Sbjct: 245 ALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKP 304
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
+TFVG+L CSH+G + G++YF M Y +EP + HYG
Sbjct: 305 DGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALEL 364
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+H D +LG ++LL + + G+YV LSN+YAS W
Sbjct: 365 IRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRW 424
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+ V RKLM + K PGCS IE ++
Sbjct: 425 DDVNTCRKLMIKRGVHKTPGCSSIEVNN 452
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 121/250 (48%), Gaps = 13/250 (5%)
Query: 58 AHKMFVKI-TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
A ++F+ + + ++ +NT+I Q A+ ++ QM+ ++KP + T +L AC
Sbjct: 157 AQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACA 216
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
L +MG +HG I + + + N+LI + CG L A +F G ++ ++ W+S
Sbjct: 217 HLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNS 276
Query: 177 LTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV---- 228
+ G G A + F M D V++ +++G + G + F+E+
Sbjct: 277 IIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVY 336
Query: 229 -PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+ V + M+ G K+ALE+ +R++ +P+ + + SLL AC D ++G
Sbjct: 337 GLEPGVEHYGCMVDLLGRAGYLKEALEL---IRAMPMKPNSMVLGSLLRACQIHKDTKLG 393
Query: 288 KKVHCTLLDM 297
++V LL++
Sbjct: 394 EQVTQQLLEL 403
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 174/542 (32%), Positives = 274/542 (50%), Gaps = 90/542 (16%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT 75
T+ LKQI A + + G + +LI++ S G I +A ++F + P F +N
Sbjct: 32 THKAQLKQIHARLLVLGLQFSGFLITKLIHASSSF--GDITFARQVFDDLPRPQIFPWNA 89
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
IIRG +++ + DA+ +Y+ M+ + P+ FTF +LKAC+ L + MG VH ++ + G
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG 149
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDG--DAKMDVVAWSSLTAGYARRGELSMARSL 193
F+ + FV+N LI +A C L +A +F+G + +V+W+++ + YA+ GE A +
Sbjct: 150 FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEI 209
Query: 194 FDEMPVRD------------------------------------------LVSWNVMITG 211
F M D L+S N M
Sbjct: 210 FSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM--- 266
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
YAK G++ A LF+++ +++ WNAMISGY G ++A++MF EM + RPD +++
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISI 326
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
S ++ACA +G LE + ++ + + V +ALIDM+AKCGS+E A VF
Sbjct: 327 TSAISACAQVGSLEQARSMY-EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
DRDV WS +I G HG A E+I+++R M+R V P ++TF+G+L+AC+H+G V EG
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 392 YFKLMRDEYNIEPNIRHYGV---------------------------------------H 412
+F LM D + I P +HY H
Sbjct: 446 FFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
VELG A ++L ++ +G YV LSN+YA+ W+RV +VR M + + K GCS
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564
Query: 473 IE 474
+E
Sbjct: 565 VE 566
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 180/585 (30%), Positives = 288/585 (49%), Gaps = 121/585 (20%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG-----AINYAHKMFVKI 65
L ++C ++R L Q+ A + +G ++ +S + +L+ S + G A+ +A +MF ++
Sbjct: 9 LLQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVAS-YCALSGRAGDVALCHARRMFDRV 67
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+PD F YN++IR + S P +A+ L+ + + I PN+FT FVLKAC+R
Sbjct: 68 PDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHAL 127
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM-DVVAWSSLTAGYARR 184
HG +K G+ FV N+L++ A+ G L + LF A +VV+W+++ G A+
Sbjct: 128 ATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQA 187
Query: 185 GELSMARSLFDEMPVR---------------------------------------DLVSW 205
GE S A +LF EM + DL+
Sbjct: 188 GETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILG 247
Query: 206 NVMITGYAKQGEMEKANELFN-------------------------------EVPKRDVV 234
N ++ Y K G++ A+ F+ ++P+R+++
Sbjct: 248 NALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNII 307
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
SWNAMIS YV G + L ++ M+S+G PD+VT+ +L+ GDL G+ +HC +
Sbjct: 308 SWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYI 367
Query: 295 LDMTS--GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
D S GV + N+LIDMYA+CG ++ +I +F M +++ +W+ +IG LA HG A+
Sbjct: 368 QDSFSDPGVTVL---NSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQ 424
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
E++ FR M P EITFVG+L ACSH G +E+G+ YFK MR YN++P + HY
Sbjct: 425 EAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACM 484
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG VE+G+LA K+LL +
Sbjct: 485 VDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELEGING 544
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G +VL+SN+ +W ++++RKLM D KK G S IE ++
Sbjct: 545 GLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINNS 589
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 174/576 (30%), Positives = 279/576 (48%), Gaps = 111/576 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C + LKQIQA + + G D A LI ++ ++Y K+ + P+
Sbjct: 59 LLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNV 118
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F +N +IRG +S+NP + LY +M + +P+ +T+SF+ K C L+ MGF + G
Sbjct: 119 FSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILG 178
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+++K GF+ + ++ N +I+ + G+ A +FD D+V+W+SL GY RR +
Sbjct: 179 QVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPRE 238
Query: 190 ARSLF----------DEMPVRDLVSW-----------------------------NVMIT 210
A ++ DE+ + +VS N ++
Sbjct: 239 AMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMD 298
Query: 211 GYAKQGEMEKANELFN-------------------------------EVPKRDVVSWNAM 239
Y K G++E LF+ ++P+++VV+WNAM
Sbjct: 299 MYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAM 358
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
I V ++ +ALE+F EM+ +PD VTML L+AC+ LG L+ G H +
Sbjct: 359 IGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNL 418
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ L G ALIDMYAKCG++ +A++VF M R+ TW+ +IGGLA +G ++I F
Sbjct: 419 SLDVAL-GTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFS 477
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY---------- 409
+M + P EITF+GVL AC H G VEEG+KYF M+ +N+ P +HY
Sbjct: 478 KMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRA 537
Query: 410 -----------------------------GVHGDVELGRLANKRLLNMRKDESGDYVLLS 440
G+H ++ +G A +LL++ +SG YVLL+
Sbjct: 538 GLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYVLLA 597
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
N+Y G+W + +RK+M + ++K PG S IE +
Sbjct: 598 NMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVN 633
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 168/500 (33%), Positives = 252/500 (50%), Gaps = 72/500 (14%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSG-SVVIPGAINYAHKMFVKITEPDTFM 72
+C+ LKQI A + G DS A+ + + S + YA +F PDTF+
Sbjct: 52 RCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFL 111
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +IRG + S P ++ LY +M CS N +TF +LKAC+ L +H +I
Sbjct: 112 WNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQIT 171
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K G+E + + NSLI +A G+ A +LFD K D V+W+S+ GYA+ G++ +A +
Sbjct: 172 KLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALT 231
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
LF +M ++ +SW MI+GY + G ++A +LF+E+ DV
Sbjct: 232 LFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDV------------------- 272
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
PD+V++ + L+ACA LG LE GK +H L + VL G LID
Sbjct: 273 ------------EPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVL-GCVLID 319
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCG + A+EVF ++ + V W+ LI G A+HG E+I+ F EMQ++ ++P IT
Sbjct: 320 MYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVIT 379
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F VL ACS+ G VEEGK F M +YN++P I HYG
Sbjct: 380 FTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEM 439
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+H ++ELG + L+ + G YV +NI+A +W++
Sbjct: 440 PLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAA 499
Query: 454 KVRKLMDDSDIKKQPGCSLI 473
+ R+LM + + K PGCS I
Sbjct: 500 ETRRLMKEQGVAKVPGCSTI 519
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/502 (31%), Positives = 253/502 (50%), Gaps = 79/502 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+ NY+ +F ++ EP+ F++NT+IRG DA+ LY M PN FT FVL
Sbjct: 62 GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC R L +G +H +VK G++ + FV+ SL+ + C + + A +FD +VV
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181
Query: 173 AWSSLTAGYARRGELSMA---------------------------------------RSL 193
+W+++ GY G A R +
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI 241
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
D R++ ++ Y K G +E+AN +F+ +P++D+VSW+ MI GY G+ +QAL
Sbjct: 242 SDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQAL 301
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
++F +M+S +PD TM+ +L+ACA LG L++G +L+D ++ + G ALIDM
Sbjct: 302 DLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWAS-SLMDRNEFLSNPVLGTALIDM 360
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
Y+KCGS+ +A E+F M+ +D W+ ++ GL+ +G A+ ++F +++ +RP E TF
Sbjct: 361 YSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTF 420
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------- 410
+G+L C+H G V EG+++F M+ +++ P+I HYG
Sbjct: 421 IGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMP 480
Query: 411 ----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
+H D L K+L+ + SG+YV LSNIY+ W EK
Sbjct: 481 MKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEK 540
Query: 455 VRKLMDDSDIKKQPGCSLIEAD 476
+R M + I+K CS IE D
Sbjct: 541 IRSTMKEQQIQKIRACSWIEID 562
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 128/281 (45%), Gaps = 16/281 (5%)
Query: 30 INGFNSDSSALRELIYSGSV----VIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQN 85
I+ + SDS R + + S+ V G + A+ +F + E D ++T+I+G A +
Sbjct: 237 IDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGL 296
Query: 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145
P A+ L+ QM+ ++KP+ +T VL AC L ++G + + F N + +
Sbjct: 297 PQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTA 356
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF---DEMPVR-D 201
LI ++ CG + A +F K D V W+++ G + G SLF ++ +R D
Sbjct: 357 LIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPD 416
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPK-----RDVVSWNAMISGYVLCGMNKQALEMF 256
++ ++ G G + + + FN + + + + M+ G+ +A ++
Sbjct: 417 ENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLI 476
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
M +P+ V +LL C D + ++V L+++
Sbjct: 477 NNMPM---KPNAVVWGALLGGCKLHKDTHLAEQVLKKLIEL 514
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/454 (35%), Positives = 237/454 (52%), Gaps = 80/454 (17%)
Query: 69 DTFMYNTIIRGS----AQSQNPLDA-VFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
++F++NT+IR AQ P + + ++ +M ++P+ TF F+L++ ++
Sbjct: 23 ESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHL 82
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G VH +I+++G + FV+ SLI +++CG+L A +FD + D+ +W+S+ +
Sbjct: 83 GRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQ 142
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G + MAR+LF MP R+++SW+ MI GY +
Sbjct: 143 AGLVDMARNLFAVMPERNVISWSCMINGYVR----------------------------- 173
Query: 244 VLCGMNKQALEMFEEMRSVG---ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
CG K+AL +F EM+ +G RP++ TM +L AC LG LE GK H +D
Sbjct: 174 --CGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAH-AYIDKCGM 230
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGM-RDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
V+ G ALIDMYAKCGS+E+A VF + ++DV WS +I GLA HG AEE + +F
Sbjct: 231 PVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFS 290
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
+M VRP +TF+ V AC H G V EGK Y + M ++Y+I P I+HYG
Sbjct: 291 KMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRA 350
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
+HGD+E LA K+L+ + SG YVLLS
Sbjct: 351 GRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLS 410
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
N+YA RG W V VR LM+ IKK PGCSLIE
Sbjct: 411 NVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIE 444
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 176/551 (31%), Positives = 267/551 (48%), Gaps = 111/551 (20%)
Query: 35 SDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYT 94
+D S + LI S ++ P I AH +F +I P +N +IRG + S P +A+ +Y
Sbjct: 8 TDPSTIYNLIKSYALS-PSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYN 66
Query: 95 QMEKCSIKPNKFTFSFVLKACTRL---------------------------LYRNMGFCV 127
M + + N T+ F+ KAC R+ L G C
Sbjct: 67 LMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCG 126
Query: 128 HGKIVKYGF----EFNRFVRNSLIYFHANC------------------------------ 153
H + + F E + NSL+ + C
Sbjct: 127 HLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVL 186
Query: 154 -----GDLNTASVLFD----GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS 204
G+ A + D + ++DV ++L Y RRG + +AR +FD+M R+LVS
Sbjct: 187 ACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVS 246
Query: 205 WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
WN MI GY K G + A ELF+ + +RDV+SW MI+ Y G +AL +F+EM
Sbjct: 247 WNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKV 306
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
+PD++T+ S+L+ACA G L+VG+ H + A + GNALIDMY KCG +E+A+
Sbjct: 307 KPDEITVASVLSACAHTGSLDVGEAAH-DYIQKYDVKADIYVGNALIDMYCKCGVVEKAL 365
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
EVF MR +D +W+++I GLA +GFA+ ++ F M R V+P+ FVG+L+AC+HAG
Sbjct: 366 EVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAG 425
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------------- 410
V++G +YF+ M Y ++P ++HYG
Sbjct: 426 LVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRIL 485
Query: 411 -----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
VHG++ L +A K+LL + SG+YVL SN YA W K+R+LM+ S+++
Sbjct: 486 LSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQ 545
Query: 466 KQPGCSLIEAD 476
K G S IE +
Sbjct: 546 KPSGSSCIEME 556
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/502 (31%), Positives = 253/502 (50%), Gaps = 79/502 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+ NY+ +F ++ EP+ F++NT+IRG DA+ LY M PN FT FVL
Sbjct: 62 GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC R L +G +H +VK G++ + FV+ SL+ + C + + A +FD +VV
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181
Query: 173 AWSSLTAGYARRGELSMA---------------------------------------RSL 193
+W+++ GY G A R +
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI 241
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
D R++ ++ Y K G +E+AN +F+ +P++D+VSW+ MI GY G+ +QAL
Sbjct: 242 SDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQAL 301
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
++F +M+S +PD TM+ +L+ACA LG L++G +L+D ++ + G ALIDM
Sbjct: 302 DLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWAS-SLMDRNEFLSNPVLGTALIDM 360
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
Y+KCGS+ +A E+F M+ +D W+ ++ GL+ +G A+ ++F +++ +RP E TF
Sbjct: 361 YSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTF 420
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------- 410
+G+L C+H G V EG+++F M+ +++ P+I HYG
Sbjct: 421 IGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMP 480
Query: 411 ----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
+H D L K+L+ + SG+YV LSNIY+ W EK
Sbjct: 481 MKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEK 540
Query: 455 VRKLMDDSDIKKQPGCSLIEAD 476
+R M + I+K CS IE D
Sbjct: 541 IRSTMKEQQIQKIRACSWIEID 562
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 128/281 (45%), Gaps = 16/281 (5%)
Query: 30 INGFNSDSSALRELIYSGSV----VIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQN 85
I+ + SDS R + + S+ V G + A+ +F + E D ++T+I+G A +
Sbjct: 237 IDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGL 296
Query: 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145
P A+ L+ QM+ ++KP+ +T VL AC L ++G + + F N + +
Sbjct: 297 PQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTA 356
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF---DEMPVR-D 201
LI ++ CG + A +F + D V W+++ G + G SLF ++ +R D
Sbjct: 357 LIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPD 416
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPK-----RDVVSWNAMISGYVLCGMNKQALEMF 256
++ ++ G G + + + FN + + + + M+ G+ +A ++
Sbjct: 417 ENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLI 476
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
M +P+ V +LL C D + ++V L+++
Sbjct: 477 NNMPM---KPNAVVWGALLGGCKLHKDTHLAEQVLKKLIEL 514
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 180/551 (32%), Positives = 276/551 (50%), Gaps = 92/551 (16%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L K+CT+ ++L+QI + IN + + L I N A +F +I P+
Sbjct: 37 LLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDLKD------FNNASLLFSQIPYPNE 90
Query: 71 FMYNTIIRGSAQSQNPLD-AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+ +N +IRG + + + Y QM+ I+PN FT+ FV AC LL N G C H
Sbjct: 91 YAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHS 150
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
++K G + VR+SLI ++ CG+L A +FD ++ D+V+W+S+ +GY+R G
Sbjct: 151 GVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGD 210
Query: 190 ARSLFDEMPVRD------------------------LVSW-----------------NVM 208
A LF EM RD L SW + +
Sbjct: 211 AVGLFGEM--RDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSAL 268
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
I Y K G++ A +F+ + K+DVV+WNAMI+GY G++ +A+ +F MR G PD
Sbjct: 269 IGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDK 328
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
+T++ +L+ACA +G L+ GK + T + ALIDMYAKCGS++ A+ VF
Sbjct: 329 ITLVGVLSACASIGALDFGKWLD-TYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFE 387
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL--KVRPTEITFVGVLVACSHAGKV 386
M ++ +W+ +I LAFHG +ES+++F+ M + VRP +I+F+GVL AC HAG V
Sbjct: 388 DMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLV 447
Query: 387 EEGKKYFKLMRDEYNIEPNIRHYG-----------VH-------------GDVELGRL-- 420
+EG++ F LM + + P I H+ VH +V LG L
Sbjct: 448 DEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLG 507
Query: 421 -ANKR------------LLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
KR LL M SG+Y++ S I+A+ W+ ++R LM + K
Sbjct: 508 ACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKT 567
Query: 468 PGCSLIEADDK 478
PGCS IE +++
Sbjct: 568 PGCSWIEIENQ 578
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 255/513 (49%), Gaps = 106/513 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F++N +I+ + P A+ L+ M K + +KF+ S VLKAC+RL + G H
Sbjct: 87 DPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXH 146
Query: 129 GKIVKYGFEFNRFVRNSLIYFH-------------------------------ANCGDLN 157
G + K G + F++N LI + CG +
Sbjct: 147 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIE 206
Query: 158 TASVLFD--GDAKMDVVAWSSLTAGYARRGE-LSMARSLFDEMPVRDLVSWNVMITGYAK 214
+A LFD K ++++W+S+ GYA+R + + +A +LFDEMP +DL+SWN +I GY K
Sbjct: 207 SARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVK 266
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS------------- 261
G +E A +LF+++P+RDVV+W M+ GY G QA +F++M
Sbjct: 267 HGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGY 326
Query: 262 VGER-------------------PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
V R PD+ T++ +L+A A LG L +H ++ +
Sbjct: 327 VQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLG 386
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDMY+KCGSI++A+ VF + ++ + W+ +IGGLA HG E + M +++
Sbjct: 387 GKL-GVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 445
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
R ++P +ITFVGVL ACSH+G V+EG F+LM+ ++ IEP ++HYG
Sbjct: 446 RRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRI 505
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E G L K L+ YVLLSN+Y
Sbjct: 506 ELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMY 565
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
AS G W V +VR +M + I+K PGCS IE D
Sbjct: 566 ASLGMWKEVRRVRTMMKERKIQKIPGCSWIELD 598
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 138/322 (42%), Gaps = 26/322 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G ++ A +F ++ + D YN+++ G Q++ ++A+ ++ MEK S + P++ T V
Sbjct: 299 GFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIV 358
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + +H V+ F + +LI ++ CG + A +F+ +
Sbjct: 359 LSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSI 418
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY---AKQGEMEKANELFNEV 228
W+++ G A G A + ++ R + ++ G + K L E+
Sbjct: 419 DHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFEL 478
Query: 229 PKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
KR + + M+ G + A + EEM P+DV + LTAC+
Sbjct: 479 MKRKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPI---EPNDVIWRTFLTACSHHK 535
Query: 283 DLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS---- 336
+ E G+ V H L + + VL L +MYA G + V M++R +
Sbjct: 536 EFETGELVAKHLILQAGYNPSSYVL----LSNMYASLGMWKEVRRVRTMMKERKIQKIPG 591
Query: 337 -TWSTLIGGLAFHGFAEESIAM 357
+W L G + H F +S+ +
Sbjct: 592 CSWIELDGSV--HEFFVDSMEL 611
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 176/558 (31%), Positives = 288/558 (51%), Gaps = 80/558 (14%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KC NL +KQ+ A + + D +LI + S+ N A ++F ++ EP+ +
Sbjct: 28 KCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALSLC--RQTNLALRVFNQVQEPNVHLC 85
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
N++IR A + P A F++++M++ + + FT+ F+LKAC+ L + + +H I K
Sbjct: 86 NSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEK 145
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNT--ASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
G + +V N+LI ++ CG L A LF+ ++ D V+W+S+ G + GEL AR
Sbjct: 146 LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDAR 205
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM------------ 239
LFDEMP RDL+SWN M+ GYA+ EM +A ELF ++P+R+ VSW+ M
Sbjct: 206 KLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEM 265
Query: 240 ---------------------ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
I+GY G+ K+A ++ ++M + G R D +S+L AC
Sbjct: 266 ARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAAC 325
Query: 279 ADLGDLEVGKKVHCTLLDMT-SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
A+ G L +G + H + + A VL NAL+DMYAKCGS+++A +VF M +D+ +
Sbjct: 326 AESGLLSLGMRAHSIIKKSNLNSNASVL--NALLDMYAKCGSLKKAFDVFNDMPKKDLVS 383
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+T++ GL HG +E+I +F M++ + P ++TF+ VL +C+HAG ++EG YF M
Sbjct: 384 WNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSME 443
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
Y++ P + HYG +H +V++
Sbjct: 444 KVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIA 503
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ L+ + + G+Y LLSNIYA+ +W V +R M ++K G S +E +D
Sbjct: 504 KEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDG 563
Query: 479 AFLQYLFNLKPKPNSGNL 496
+F+ K P S +
Sbjct: 564 IHEFTVFD-KSHPKSDQI 580
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 180/604 (29%), Positives = 293/604 (48%), Gaps = 136/604 (22%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTING-FNSDSSALRELIYSGSVVIPGAINYAHKMF 62
N S+L K+C +L+TL I A + I+G S L +L+ S GA++YAHK+F
Sbjct: 2 NHSLISKLLKQCRSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKF--GAVSYAHKLF 59
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
+ EP++F++ +I G ++ +A + +M + +I P FT + VLKA +RL
Sbjct: 60 DETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIK 119
Query: 123 MGFCVHGKIVKYGFEFNRFVR-------------------------------NSLIYFHA 151
G V+G V+ G+EF+ V+ NS+I +
Sbjct: 120 DGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYG 179
Query: 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW------ 205
N G ++ A LFD + +V++W+S+ GY + G+L AR LF+ MP +DL SW
Sbjct: 180 NNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSA 239
Query: 206 -------------------------NVMITGYAKQGEMEKANE----------------- 223
N+MI+G K GEM+ A E
Sbjct: 240 YMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMII 299
Query: 224 --------------LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
+F+++P++++V+W+ MI GY G +L++++ + G +PD+
Sbjct: 300 DGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDET 359
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
L +++AC+ LG + + V C + S + +LIDMYAKCG+IERA++VF
Sbjct: 360 FALGIISACSQLGVPDTAESVICDFVG-PSLFPNLQVVTSLIDMYAKCGNIERAVQVFEM 418
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+ +D+ +ST+I A HG +E++I++F EMQ+ ++P + F+GVL AC+H G V EG
Sbjct: 419 VDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEG 478
Query: 390 KKYFKLMRDEYNIEPNIRHYG--------------------------------------- 410
++ F+ M DEY I+P+ +HY
Sbjct: 479 RRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSACR 538
Query: 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470
VH +V+L A L + + SG+YVLL NIYA G+W+ KVR ++ ++ ++K G
Sbjct: 539 VHLNVQLAEAAATELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGS 598
Query: 471 SLIE 474
S IE
Sbjct: 599 SWIE 602
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 171/507 (33%), Positives = 264/507 (52%), Gaps = 77/507 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
+ + C N+ + I A + + D+ + ELI S + +++YA+ +F ++ P+
Sbjct: 35 VLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTL--DSVDYAYDVFSYVSNPNV 92
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++Y +I G S D V LY +M S+ P+ + + VLKAC + R +H +
Sbjct: 93 YLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCRE----IHAQ 148
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++K GF +R V G M++ Y + GEL A
Sbjct: 149 VLKLGFGSSRSV----------------------GLKMMEI---------YGKSGELVNA 177
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
+ +FDEMP RD V+ VMI Y++ G +++A ELF +V +D V W AMI G V
Sbjct: 178 KKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMN 237
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ALE+F EM+ ++ T + +L+AC+DLG LE+G+ VH + + ++ + GNAL
Sbjct: 238 KALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFV-GNAL 296
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
I+MY++CG I A VF MRD+DV +++T+I GLA HG + E+I FR+M RP +
Sbjct: 297 INMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQ 356
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
+T V +L ACSH G ++ G + F M+ +N+EP I HYG
Sbjct: 357 VTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIE 416
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+HG++ELG KRL +SG YVLLSN+YAS G+W
Sbjct: 417 NIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKE 476
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEADDK 478
++R+ M DS I+K+PGCS IE D++
Sbjct: 477 STEIRESMRDSGIEKEPGCSTIEVDNQ 503
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 177/578 (30%), Positives = 275/578 (47%), Gaps = 120/578 (20%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
+CTN LKQI A + D +L+ + ++ + YA +F +I +P+ + +
Sbjct: 81 QCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCW 140
Query: 74 NTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
NT+IRG A S +P + ++ M CS PNKFTF F+ KA +RL ++G +HG ++
Sbjct: 141 NTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVI 200
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K + F+ NSLI F+ + G + A +F DVV+W+++ +A G A
Sbjct: 201 KASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALL 260
Query: 193 LFDEMPVRD---------------------------------------LVSWNVMITGYA 213
LF EM ++D L+ N M+ Y
Sbjct: 261 LFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYV 320
Query: 214 KQGEMEKANELFNEVPKRDVVS-------------------------------WNAMISG 242
K G + A +LFN++ ++D+VS WNA+IS
Sbjct: 321 KCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISA 380
Query: 243 YVLCGMNKQALEMFEEMR-SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDM 297
Y G + AL +F EM+ S +PD+VT++ L A A LG ++ G +H + +++
Sbjct: 381 YEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINL 440
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
+A +L+DMYAKCG++ +A+EVF + +DV WS +IG LA +G + ++ +
Sbjct: 441 NCHLA-----TSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDL 495
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------ 411
F M ++P +TF +L AC+HAG V EG++ F+ M Y I P I+HY
Sbjct: 496 FSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFG 555
Query: 412 ---------------------------------HGDVELGRLANKRLLNMRKDESGDYVL 438
HG+VEL LA + LL + G +VL
Sbjct: 556 RAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVL 615
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
LSNIYA G+W +V +RKLM DSD+KK+P CS I+ +
Sbjct: 616 LSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVN 653
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 171/529 (32%), Positives = 257/529 (48%), Gaps = 106/529 (20%)
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
NY F D F++N +I+ + +P A+ + M + + +KF+ S VLKAC
Sbjct: 47 NYHSCSFAHGEVEDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKAC 106
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+RL + G +HG + K G + F++N LI + CG L A +FD + D V+++
Sbjct: 107 SRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYN 166
Query: 176 SLTAGYARRGELSMARSLFD----------------------------------EMPVRD 201
S+ GY + G + AR LFD EMP +D
Sbjct: 167 SMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKD 226
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW------------------------- 236
L+SWN +I GY K G ME A +LF +P+RDVV+W
Sbjct: 227 LISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPH 286
Query: 237 ------NAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKK 289
N+M++GYV N +ALE+F +M PD+ T++ +L+A A LG L
Sbjct: 287 RDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 346
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
+H +++ + L G ALIDMY+KCGSI++A+ VF + ++ + W+ +IGGLA HG
Sbjct: 347 MHLYIVEKQFFLGGKL-GVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHG 405
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
E + M E++R ++P +ITFVG+L ACSH+G V+EG F+LMR ++ IEP ++HY
Sbjct: 406 LGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 465
Query: 410 GV---------------------------------------HGDVELGRLANKRLLNMRK 430
G H + E G + K L+
Sbjct: 466 GCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAG 525
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
YVLLSN+YAS G W +VR +M + +++K PGCS IE D +
Sbjct: 526 YNPSSYVLLSNMYASFGMWKDARRVRTMMKERELQKVPGCSWIELDGRV 574
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 140/320 (43%), Gaps = 26/320 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G ++ A +F ++ D YN+++ G Q++ ++A+ +++ MEK S + P++ T V
Sbjct: 272 GFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIV 331
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + +H IV+ F + +LI ++ CG + A ++F+ +
Sbjct: 332 LSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSI 391
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY---AKQGEMEKANELFNEV 228
W+++ G A G A + E+ R + ++ G + K L E+
Sbjct: 392 DHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFEL 451
Query: 229 PKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+R + + M+ G + A + EEM P+DV + LTAC+
Sbjct: 452 MRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPM---EPNDVIWRTFLTACSHHK 508
Query: 283 DLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS---- 336
+ E G+ V H L + + VL N MYA G + A V M++R++
Sbjct: 509 EFETGEVVAKHLILQAGYNPSSYVLLSN----MYASFGMWKDARRVRTMMKERELQKVPG 564
Query: 337 -TWSTLIGGLAFHGFAEESI 355
+W L G + H F +SI
Sbjct: 565 CSWIELDGRV--HEFFVDSI 582
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 173/516 (33%), Positives = 255/516 (49%), Gaps = 106/516 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F++N +I+ + ++P A+ L M + + +KF+ S VLKAC+RL + G +H
Sbjct: 85 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 144
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G + K G + F++N LI + CG L + +FD K D V+++S+ GY + G +
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 204
Query: 189 MARSLFD----------------------------------EMPVRDLVSWNVMITGYAK 214
AR LFD +MP +DL+SWN MI GY K
Sbjct: 205 SARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVK 264
Query: 215 QGEMEKANELFNEVPKRDVVSW-------------------------------NAMISGY 243
G +E A LF+ +P+RDVV+W N+M++GY
Sbjct: 265 HGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGY 324
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
V + +ALE+F +M PDD T++ +L A A LG L +H +++ +
Sbjct: 325 VQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLG 384
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDMY+KCGSI+ A+ VF G+ ++ + W+ +IGGLA HG E + M +++
Sbjct: 385 GKL-GVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 443
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
RL ++P +ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 444 RLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 503
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E G L K L+ YVLLSN+Y
Sbjct: 504 ELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMY 563
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
AS G W V +VR +M + I+K PGCS IE D +
Sbjct: 564 ASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRV 599
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 140/323 (43%), Gaps = 32/323 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G +++A +F ++ D YN+++ G Q++ ++A+ +++ MEK S + P+ T V
Sbjct: 297 GFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIV 356
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + +H IV+ F + +LI ++ CG + A ++F+G +
Sbjct: 357 LPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI 416
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWN------VMITGYAKQGEMEKANELF 225
W+++ G A G + S FD + + +S V + + K L
Sbjct: 417 DHWNAMIGGLAIHG---LGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLC 473
Query: 226 NEVPKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
E+ +R + + M+ G + A + EEM P+DV + LTAC+
Sbjct: 474 FELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPV---EPNDVIWRTFLTACS 530
Query: 280 DLGDLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS- 336
+ E G+ V H L + + VL N MYA G + V M++R +
Sbjct: 531 HHKEFETGELVAKHLILQAGYNPSSYVLLSN----MYASFGMWKDVRRVRTMMKERKIEK 586
Query: 337 ----TWSTLIGGLAFHGFAEESI 355
+W L G + H F +SI
Sbjct: 587 IPGCSWIELDGRV--HEFFVDSI 607
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F EV D WNA+I + +QAL + M G D ++ +L AC+ LG +
Sbjct: 80 FGEV--EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFV 137
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
+ G ++H L T + + N LI +Y KCG + + ++F M RD +++++I G
Sbjct: 138 KGGMQIH-GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDG 196
Query: 345 LAFHGFAEESIAMFREM 361
G + +F M
Sbjct: 197 YVKCGLIVSARELFDLM 213
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 173/516 (33%), Positives = 255/516 (49%), Gaps = 106/516 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F++N +I+ + ++P A+ L M + + +KF+ S VLKAC+RL + G +H
Sbjct: 78 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 137
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G + K G + F++N LI + CG L + +FD K D V+++S+ GY + G +
Sbjct: 138 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 197
Query: 189 MARSLFD----------------------------------EMPVRDLVSWNVMITGYAK 214
AR LFD +MP +DL+SWN MI GY K
Sbjct: 198 SARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVK 257
Query: 215 QGEMEKANELFNEVPKRDVVSW-------------------------------NAMISGY 243
G +E A LF+ +P+RDVV+W N+M++GY
Sbjct: 258 HGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGY 317
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
V + +ALE+F +M PDD T++ +L A A LG L +H +++ +
Sbjct: 318 VQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLG 377
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDMY+KCGSI+ A+ VF G+ ++ + W+ +IGGLA HG E + M +++
Sbjct: 378 GKL-GVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 436
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
RL ++P +ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 437 RLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 496
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E G L K L+ YVLLSN+Y
Sbjct: 497 ELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMY 556
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
AS G W V +VR +M + I+K PGCS IE D +
Sbjct: 557 ASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRV 592
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 141/323 (43%), Gaps = 32/323 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G +++A +F ++ D YN+++ G Q++ ++A+ +++ MEK S + P+ T V
Sbjct: 290 GFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIV 349
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + +H IV+ F + +LI ++ CG + A ++F+G +
Sbjct: 350 LPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI 409
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWN------VMITGYAKQGEMEKANELF 225
W+++ G A G + S FD + + +S V + + K L
Sbjct: 410 DHWNAMIGGLAIHG---LGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLC 466
Query: 226 NEVPKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
E+ +R + + M+ G + A + EEM P+DV + LTAC+
Sbjct: 467 FELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPV---EPNDVIWRTFLTACS 523
Query: 280 DLGDLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS- 336
+ E G+ V H L + + VL L +MYA G + V M++R +
Sbjct: 524 HHKEFETGELVAKHLILQAGYNPSSYVL----LSNMYASFGMWKDVRRVRTMMKERKIEK 579
Query: 337 ----TWSTLIGGLAFHGFAEESI 355
+W L G + H F +SI
Sbjct: 580 IPGCSWIELDGRV--HEFFVDSI 600
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F EV D WNA+I + +QAL + M G D ++ +L AC+ LG +
Sbjct: 73 FGEV--EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFV 130
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
+ G ++H L T + + N LI +Y KCG + + ++F M RD +++++I G
Sbjct: 131 KGGMQIH-GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDG 189
Query: 345 LAFHGFAEESIAMFREM 361
G + +F M
Sbjct: 190 YVKCGLIVSARELFDLM 206
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 171/532 (32%), Positives = 274/532 (51%), Gaps = 81/532 (15%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ + GF +L +LI + + YA+ +F D +N+++R S P
Sbjct: 1 MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPR 60
Query: 88 DAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL 146
A+ YT+M E+ P++FTF +LK C LL +G +HG++VKY + ++ +L
Sbjct: 61 RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120
Query: 147 IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF----------DE 196
+ +A CGDL +A LF+ + V W+S+ +GY + + A L+ DE
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
Query: 197 MPVRDLVSW-----------------------------NVMITGYAKQGEMEKANELFNE 227
+ + LVS + ++ YAK G+++ A ++F++
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQ 240
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEV 286
+ +DV +W+A+I GYV + +AL++F E+ RP++VT+L++++ACA LGDLE
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLET 300
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G+ VH + G + L+ N+LIDM++KCG I+ A +F M +D+ +W++++ GLA
Sbjct: 301 GRWVHDYITRTQKGHSVSLN-NSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLA 359
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HG E++A F MQ ++P EITF+GVL ACSHAG V+EGKK F + Y +
Sbjct: 360 LHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKS 419
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HYG V+ ++ELG A + LL
Sbjct: 420 EHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLE 479
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
+ G Y+LLSNIYA R WN V+KVR+LM++ I+K PGCS + D+ A
Sbjct: 480 LEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIA 531
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 172/499 (34%), Positives = 257/499 (51%), Gaps = 80/499 (16%)
Query: 6 HR-SSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
HR S+ L T+ LKQ+ A + NS S+L + + +YA +F
Sbjct: 15 HRPSTHLLHNFTSPFELKQLHAHLLKT--NSPLSSLPLSRVASVCAFNSSFSYAKLIFQL 72
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+ + +NT +R A+ +P DA+ L+ ++ + I P+ +T SFVLKAC+RLL G
Sbjct: 73 LDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNG 132
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
VHG + K G + N F++N +++ +A CG++ A +FD + DV+ W+ + A +
Sbjct: 133 KIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKM 192
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G+ A LF EMP R++ SW MI GYA+
Sbjct: 193 GDAEGAYKLFAEMPERNVRSWTSMIGGYAQ------------------------------ 222
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT--SGVA 302
CG +K+A+++F EM G P++VT++++L ACAD+G+L +G+++H D + SG
Sbjct: 223 -CGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIH----DFSNRSGYE 277
Query: 303 KVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
K + N LIDMY KCG +E A +F M +R V +WS +I GLA HG AE+++A+F +M
Sbjct: 278 KNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKM 337
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
V+P +TF+G+L ACSH G VE+G+KYF M +Y I P I HYG
Sbjct: 338 INTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGL 397
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
VH +V+L A + L + G YV+LSNI
Sbjct: 398 LQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNI 457
Query: 443 YASRGEWNRVEKVRKLMDD 461
YA G W V +VRKLM D
Sbjct: 458 YAEAGRWEDVARVRKLMRD 476
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 173/542 (31%), Positives = 274/542 (50%), Gaps = 90/542 (16%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT 75
T+ LKQI A + + G + +LI++ S G I +A ++F + P F +N
Sbjct: 32 THKAQLKQIHARLLVLGLQFSGFLITKLIHASSSF--GDITFARQVFDDLPRPQIFPWNA 89
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
IIRG +++ + DA+ +Y+ M+ + P+ FTF +LKAC+ L + MG VH ++ + G
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG 149
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDG--DAKMDVVAWSSLTAGYARRGELSMARSL 193
F+ + FV+N LI +A C L +A +F+G + +V+W+++ + YA+ GE A +
Sbjct: 150 FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEI 209
Query: 194 FDEMPVRD------------------------------------------LVSWNVMITG 211
F +M D L+S N M
Sbjct: 210 FSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM--- 266
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
YAK G++ A LF+++ +++ WNAMISGY G ++A++MF EM + RPD +++
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISI 326
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
S ++ACA +G LE + ++ + + V +ALIDM+AKCGS+E A VF
Sbjct: 327 TSAISACAQVGSLEQARSMY-EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
DRDV WS +I G HG A E+I+++R M+R V P ++TF+G+L+AC+H+G V EG
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 392 YFKLMRDEYNIEPNIRHYGV---------------------------------------H 412
+F M D + I P +HY H
Sbjct: 446 FFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
VELG A ++L ++ +G YV LSN+YA+ W+RV +VR M + + K GCS
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564
Query: 473 IE 474
+E
Sbjct: 565 VE 566
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 167/464 (35%), Positives = 245/464 (52%), Gaps = 85/464 (18%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
+ YA ++F +I +P+ ++N++ RG AQS++
Sbjct: 1 MTYARQLFDQIPDPNIALWNSMFRGYAQSES----------------------------- 31
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
YR + FC FE N S+I + DL +A LFD + DVV W
Sbjct: 32 -----YREI-FCEM-------FERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLW 78
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+ + +GY G++ AR LF EMP RD++ WN ++ GYA G +E LF E+P+R++
Sbjct: 79 NIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIF 138
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCT 293
SWNA+I GY G+ + L F+ M S + P+D T++++L+ACA LG L++GK VH
Sbjct: 139 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH-- 196
Query: 294 LLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ +SG+ V GNAL+DMYAKCG IE AI VF GM +D+ +W+TLIGGLA H
Sbjct: 197 VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGA 256
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+++ +F +M+ +P ITF+G+L AC+H G VE+G YF+ M D+Y I P I HYG
Sbjct: 257 DALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCM 316
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
++ +VEL LA +RL+ +
Sbjct: 317 VDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNP 376
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+YV+LSNIY G W V +++ M D+ KK PGCSLIE +D
Sbjct: 377 ANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVND 420
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 123/290 (42%), Gaps = 15/290 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
G + +F ++ E + F +N +I G A + + + + +M + + PN T V
Sbjct: 120 GNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTV 179
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L AC RL ++G VH G + N +V N+L+ +A CG + A +F G D+
Sbjct: 180 LSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDL 239
Query: 172 VAWSSLTAGYARRGELSMARSLFDEM----PVRDLVSWNVMITGYAKQGEMEKANELFNE 227
++W++L G A + A +LF +M D +++ ++ G +E F
Sbjct: 240 ISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQS 299
Query: 228 VPKRDVV-----SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ ++ + M+ G +QA+ +R + D V LL AC
Sbjct: 300 MADDYLIMPQIEHYGCMVDMLARAGRLEQAMAF---VRKMPVEADGVIWAGLLGACRIYK 356
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
++E+ + L+++ + L ++Y G E + + MRD
Sbjct: 357 NVELAELALQRLIELEP--KNPANYVMLSNIYGDAGRWEDVARLKVAMRD 404
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 224/392 (57%), Gaps = 42/392 (10%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H + ++G + + + L +A+ G L+ + LF V W+++ G+A RG+
Sbjct: 49 IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGD 108
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ A+ LFD MP + LVS M+T YAK GE++ A LF+ + +RD V WN MI GY
Sbjct: 109 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 168
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
GM +AL +F M +P++VT+LS+L+AC LG LE G+ VH + + +G+ +H
Sbjct: 169 GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN--NGIQFNVH 226
Query: 307 -GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
G AL+DMY+KCGS+E A VF + D+DV W+++I G A HGF++E++ +F+ M R+
Sbjct: 227 VGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG 286
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
+ PT ITF+G+L AC H+G V EG F M+DEY IEP I HYG
Sbjct: 287 LHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQA 346
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+HG + LG + L++ SG Y+LLSNIYA+
Sbjct: 347 YELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAV 406
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G W+ V ++R +M DS +KK+PGCS IE ++K
Sbjct: 407 GNWDGVARLRTMMKDSGVKKEPGCSSIEVNNK 438
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 136/297 (45%), Gaps = 24/297 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F + E D +N +I G Q+ P +A+ L+ +M K KPN+ T VL
Sbjct: 138 GELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVL 197
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC +L G VH I G +FN V +L+ ++ CG L A ++FD DVV
Sbjct: 198 SACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVV 257
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELFNEV 228
AW+S+ GYA G A LF M L N+ G G + + ++FN++
Sbjct: 258 AWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKM 317
Query: 229 -------PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
PK + + M++ G +QA E+ + M PD V +LL AC
Sbjct: 318 KDEYGIEPK--IEHYGCMVNLLGRAGHVEQAYELVKNMNI---EPDPVLWGTLLGACRLH 372
Query: 282 GDLEVGKKVHCTLLDM---TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
G + +G+K+ L+D SG +L ++YA G+ + + M+D V
Sbjct: 373 GKIALGEKIVELLVDQNLANSGTYILLS-----NIYAAVGNWDGVARLRTMMKDSGV 424
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 180/575 (31%), Positives = 273/575 (47%), Gaps = 115/575 (20%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELI---------YSGSVVIPGAINYAHKMFVKIT 66
T +R +QI A + GF +S+ ++ Y NY F
Sbjct: 1 TQIRRCEQIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGE 60
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
D F++N +I+ + +P A+ + M + + +KF+ S VLKAC+RL + G
Sbjct: 61 VEDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQ 120
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+HG + K G + F++N LI + CG L A +FD + D V+++S+ GY + G
Sbjct: 121 IHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGL 180
Query: 187 LSMARSLFD----------------------------------EMPVRDLVSWNVMITGY 212
+ AR LFD EMP +DL+SWN +I GY
Sbjct: 181 IGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGY 240
Query: 213 AKQGEMEKANELFNEVPKRDVVSW-------------------------------NAMIS 241
K G ME A +LF +P+RDVV+W N+M++
Sbjct: 241 VKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMA 300
Query: 242 GYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
GYV + +ALE+F M PD+ T++ +L+A A LG L ++ +++ +
Sbjct: 301 GYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFP 360
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ L G ALIDM++KCGSI++AI VF G++++ + W+ +IGGLA HG E + M +
Sbjct: 361 LGGKL-GVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQ 419
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV----- 415
++R ++P +ITF+GVL ACSH+G V+EG F+LMR ++ IEP ++HYG D+
Sbjct: 420 IERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVDILSRSG 479
Query: 416 ----------------------------------ELGRLANKRLLNMRKDESGDYVLLSN 441
E+G L K L+ YVLLSN
Sbjct: 480 SIELAKHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAGYNPSSYVLLSN 539
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+YAS G W V +VR +M + K PGCS IE D
Sbjct: 540 MYASLGMWKDVRRVRMMMKQRKLHKIPGCSWIELD 574
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 163/523 (31%), Positives = 260/523 (49%), Gaps = 72/523 (13%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C NL +KQ+ A + +NG + L +LI + + + Y +F ++ P+ F+YN
Sbjct: 56 CKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYN 115
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK-IVK 133
+IRG + ++ Y+ M K + P FTF+ + KAC + +G +HG+ I+
Sbjct: 116 ALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILV 175
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF + V NS+I + CG L R +
Sbjct: 176 GGFGEDLHVGNSMIDMYIKCGFLECG-------------------------------RKV 204
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FDEMP RD++SW +I+ Y K G ME A ELF+ +P +D+V+W M+SG+ ++A+
Sbjct: 205 FDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAI 264
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH-CTLLDMTSGVAKVLHGNALID 312
FE+M+ G D++T++ +++ACA LG + + G V+ G+ALID
Sbjct: 265 MFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALID 324
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+KCGS+ A VF GM++R+V ++S++I G A HG +++ +F EM + +++P +T
Sbjct: 325 MYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVT 384
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+GVL ACSHAG VE+G + F+LM Y I+P+ HY
Sbjct: 385 FIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTM 444
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+H ++ +A L + G+Y+LL+NIYAS G WN V
Sbjct: 445 PIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVS 504
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
VRKLM ++K P S IE++ ++ P SG +
Sbjct: 505 TVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEI 547
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 169/456 (37%), Positives = 240/456 (52%), Gaps = 87/456 (19%)
Query: 67 EPDT-FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR----LLYR 121
E DT ++N +I G + + +A + M + P T+ VL AC + +L
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVL-- 162
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
+G VHG++V G + V N+L+ +A C D+ +A W
Sbjct: 163 -LGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESA--------------WK------ 201
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
LFD M VR +VSW +++G + G +++A +LF +P+RD VSW AMI
Sbjct: 202 -----------LFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMID 250
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDM 297
GYV ++ALEMF EM+ D+ TM+S++TACA LG LE+G+ V + + M
Sbjct: 251 GYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKM 310
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
+ V GNALIDMY+KCGSIERA++VF M RD TW+ +I GLA +G+ EE+I M
Sbjct: 311 DAFV-----GNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEM 365
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------- 410
F M + P E+TF+GVL AC+HAG V++G+++F MR+ YNI PN+ HYG
Sbjct: 366 FHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFG 425
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
VHG+ E+G L +RLL M + S Y L
Sbjct: 426 RAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTL 485
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
LSNIYA W V ++R + + IKK+PGCSLIE
Sbjct: 486 LSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIE 521
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 99/200 (49%), Gaps = 35/200 (17%)
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD-LG 282
L +E + V WNA+ISG+ C +A F +M G P VT +S+L+AC G
Sbjct: 100 LLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTG 159
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
D+ +G +VH ++ SGV L NAL+DMYA+C +E A ++F GM+ R V +W++L
Sbjct: 160 DVLLGMQVHGRVVG--SGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSL 217
Query: 342 IGGLA--------------------------FHGFAE-----ESIAMFREMQRLKVRPTE 370
+ GL G+ + E++ MFREMQ V E
Sbjct: 218 LSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADE 277
Query: 371 ITFVGVLVACSHAGKVEEGK 390
T V V+ AC+ G +E G+
Sbjct: 278 FTMVSVITACAQLGALEMGE 297
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 173/542 (31%), Positives = 272/542 (50%), Gaps = 90/542 (16%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT 75
T+ L+QI A + + G + +LI++ S G I +A ++F + P F +N
Sbjct: 32 THKAQLRQIHARLLVLGLQFSGFLITKLIHASSSY--GDITFARQVFDDLPRPQVFPWNA 89
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
IIRG +++ + DA+ +Y++M+ + P+ FTF +LKAC L + MG VH ++ + G
Sbjct: 90 IIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLG 149
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDG--DAKMDVVAWSSLTAGYARRGELSMARSL 193
FE + FV+N LI +A C L A +F+G + +V+W+++ + YA+ GE A +
Sbjct: 150 FEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEI 209
Query: 194 FDEMPVRD------------------------------------------LVSWNVMITG 211
F +M D L+S N M
Sbjct: 210 FSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTM--- 266
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
YAK G++ A LF+++ +++ WNAMISGY G K A+++F EM + RPD +++
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISI 326
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
S ++ACA +G LE + + + + V +ALIDM+AKCGS+E A VF
Sbjct: 327 TSAISACAQVGSLEQARWMD-EYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTL 385
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
DRDV WS +I G HG A E+I+++R M+R V P ++TF+G+L+AC+H+G V EG
Sbjct: 386 DRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWW 445
Query: 392 YFKLMRDEYNIEPNIRHYGV---------------------------------------H 412
+F M D + I P +HY H
Sbjct: 446 FFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
VELG+ A ++L ++ +G YV LSN+YA+ W+RV +VR M + + K GCS
Sbjct: 505 RHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564
Query: 473 IE 474
+E
Sbjct: 565 VE 566
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 170/516 (32%), Positives = 262/516 (50%), Gaps = 106/516 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F++N +I+ + ++P A+ L+ M + + +KF+ S VLKAC+RL + G +H
Sbjct: 78 DPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 137
Query: 129 GKIVKYGFEFNRFVRN-------------------------------SLIYFHANCGDLN 157
G + K G + F++N S+I + CG +
Sbjct: 138 GFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIE 197
Query: 158 TASVLFDGDAK--MDVVAWSSLTAGYARRGE-LSMARSLFDEMPVRDLVSWNVMITGYAK 214
+A LFD + ++++W+S+ +GYA+ E +++A LF EMP +DL+SWN MI GY K
Sbjct: 198 SARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVK 257
Query: 215 QGEME-------------------------------KANELFNEVPKRDVVSWNAMISGY 243
G +E +A LF+++P RDVV++N+M++GY
Sbjct: 258 HGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGY 317
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
V + +ALE+F +M PD+ T++ +L+A A LG L +H +++ +
Sbjct: 318 VQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLG 377
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDMY+KCGSI+ A+ VF G+ ++ + W+ +IGGLA HG E + M +++
Sbjct: 378 GKL-GVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIE 436
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
RL + P +ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 437 RLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 496
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E G L K L+ YVLLSN+Y
Sbjct: 497 ELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMY 556
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
AS G W V +VR +M + I+K PGCS IE D +
Sbjct: 557 ASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRV 592
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 140/320 (43%), Gaps = 26/320 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G ++ A +F ++ D YN+++ G Q++ ++A+ ++ MEK S + P++ T +
Sbjct: 290 GFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVII 349
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + +H IV+ F + +LI ++ CG + A ++F+G +
Sbjct: 350 LSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI 409
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY---AKQGEMEKANELFNEV 228
W+++ G A G A ++ ++ ++ ++ G + K L E+
Sbjct: 410 DHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFEL 469
Query: 229 PKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+R + + M+ G + A + EEM P+DV + LTAC+
Sbjct: 470 MRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPI---EPNDVIWRTFLTACSHHK 526
Query: 283 DLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS---- 336
+ E G+ V H L + + VL L +MYA G + V M++R +
Sbjct: 527 EFETGELVAKHLILQAGYNPSSYVL----LSNMYASFGMWKDVRRVRTMMKERKIEKIPG 582
Query: 337 -TWSTLIGGLAFHGFAEESI 355
+W L G + H F +SI
Sbjct: 583 CSWIELDGRV--HEFFVDSI 600
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F+ D WNA+I + +QAL +F M G D ++ +L AC+ LG +
Sbjct: 71 FSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFV 130
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
+ G ++H L T + + N LI +Y KCG + A ++F M RD +++++I G
Sbjct: 131 KGGMQIH-GFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMING 189
Query: 345 LAFHGFAEESIAMF----REMQRL 364
G E + +F REM+ L
Sbjct: 190 YVKCGLIESARELFDLMPREMKNL 213
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 165/517 (31%), Positives = 254/517 (49%), Gaps = 76/517 (14%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
+ +L CTNL L+Q Q + G + D L IY+ + + G +YA+ +F+
Sbjct: 31 QHAEQLLCHCTNLSHLQQTQGFMLTRGLDQDDILLARFIYTSASL--GLSSYAYSVFISN 88
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
P F YN +I + S NP A+ L+ + + P+ ++F FVLKA L ++G
Sbjct: 89 HRPSIFFYNNVI-WALSSSNPTRAISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGK 147
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H + + G + + V SL+ +++C
Sbjct: 148 QIHCQAIVSGLDSHPSVVTSLVQMYSSCA------------------------------- 176
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK--RDVVSWNAMISGY 243
LS AR LFD + WN M+ GYAK G M A LF +P+ RDVVSW +ISGY
Sbjct: 177 HLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGY 236
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
+A+ +F M +PD++ +L++L+ACADLG L++G+ +H + + + K
Sbjct: 237 TQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHNNKLRK 296
Query: 304 VLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
+ N+LIDMYAK G I +A ++F M+ + + TW+T+I GLA HGF +E++ +F M+
Sbjct: 297 TVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCME 356
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
+ +V+P E+T + VL ACSH G VE G+ F MR +Y IEP I HYG
Sbjct: 357 KARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDLLGRAGYL 416
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
+GD L A + L + G+Y LLSN Y
Sbjct: 417 QEAMELVRVMPSEANAAVWGSLLSASNRYGDAALAAEALRHLSVLEPHNCGNYSLLSNTY 476
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
A+ G W VRK+M D+ +K PG S +E +++ +
Sbjct: 477 AALGWWKEAAMVRKVMRDTCAEKVPGVSFVELNNRVY 513
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 171/560 (30%), Positives = 273/560 (48%), Gaps = 96/560 (17%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ I G D A LI ++ +NY K+ I P+ F +N IRG ++S+NP
Sbjct: 1 MVITGLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPK 60
Query: 88 DAVFLYTQMEK---CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRN 144
DAV Y QM + C +P+ FT+ + K C L ++G + G + K E V N
Sbjct: 61 DAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHN 120
Query: 145 SLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF---------- 194
+ I+ A+CG++ A +FD D+V+W+ L GY + GE A ++
Sbjct: 121 ASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKP 180
Query: 195 DEMPVRDLVS-----------------------------WNVMITGYAKQGEMEKANELF 225
D++ + LVS N ++ ++K G++ +A +F
Sbjct: 181 DDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIF 240
Query: 226 NEVPKR-------------DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
+ + KR DVV WNAMI G V ++ AL +F+EM++ PD++TM+
Sbjct: 241 DNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMI 300
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
L+AC+ LG L+VG +H ++ S V G +L+DMYAKCG+I A+ VF G++
Sbjct: 301 HCLSACSQLGALDVGIWIH-RYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQT 359
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
R+ T++ +IGGLA HG A +I+ F EM + P EITF+G+L AC H G ++ G+ Y
Sbjct: 360 RNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDY 419
Query: 393 FKLMRDEYNIEPNIRHYGV---------------------------------------HG 413
F M+ +N+ P ++HY + HG
Sbjct: 420 FSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHG 479
Query: 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+V+LG A K+LL + +SG YVLL +Y W ++ R++M++ ++K PGCS I
Sbjct: 480 NVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 539
Query: 474 EADDKAFLQYLFNLKPKPNS 493
E + +++ K +P S
Sbjct: 540 EVNG-IVSEFIVRDKSRPES 558
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 176/587 (29%), Positives = 282/587 (48%), Gaps = 113/587 (19%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKM 61
+TN+ + C ++ LKQIQ+ + G D + +L+ + G + YA K+
Sbjct: 94 QTNKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKI 153
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
F + +P F+YN +++ A+ + L+ Q+ + + P+ FT+ FVLKA L
Sbjct: 154 FNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDV 213
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
G V G IVK G + + +V NSLI + ++ A LFD D V+W+ + +GY
Sbjct: 214 RQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGY 273
Query: 182 ARRGELSMARSLFDEMP----------------------------------VRDLVSW-- 205
R A + F EM VR + +
Sbjct: 274 VRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTT 333
Query: 206 ---NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE----- 257
N ++ YAK G + A +F+E+ ++V+ W +MISGY+ CG ++A ++F+
Sbjct: 334 RIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVR 393
Query: 258 --------------------------EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
EM+ +PD T+++LLT CA LG LE GK +H
Sbjct: 394 DVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIH 453
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
LD V+ G ALI+MY+KCG +++++E+F + D+D ++W+++I GLA +G
Sbjct: 454 -GYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKT 512
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
E++ +F EM+R+ +P +ITF+GVL ACSH G VEEG+++F M+ + IEP + HYG
Sbjct: 513 SEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGC 572
Query: 411 -----------------------------------------VHGDVELGRLANKRLLNMR 429
+H +V++G K+L N+
Sbjct: 573 VIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIE 632
Query: 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+S + LL+NIYAS W +KVR+ M + +KK PGCSLIE D
Sbjct: 633 SCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVD 679
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 179/530 (33%), Positives = 272/530 (51%), Gaps = 82/530 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C ++ +KQ A + G +L+ G+++YAH++F +I +PD F+
Sbjct: 23 ESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFI 82
Query: 73 YNTIIRGSA----QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
YNT+I+ A S N + +FL + + PN++TF FV KAC L G +
Sbjct: 83 YNTMIKAHAVIPTSSHNSM-RIFL-SMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIR 140
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+K G E N FV N++I +AN G ++ A +FD WS
Sbjct: 141 VHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFD---------WS------------- 178
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
D+ DL SWN+MI GY GE+ +A E+F+E+ +RDVVSW +I+GYV G
Sbjct: 179 -----LDQ----DLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGC 229
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
K+AL++F EM G P++ T+ S L ACA+L L+ G+ +H + + + L
Sbjct: 230 FKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLA- 288
Query: 309 ALIDMYAKCGSIERAIEVF---LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
+L+DMYAKCG I+ A +VF G++ + V W+ +IGG A HG ++E+I +F +M+ K
Sbjct: 289 SLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEK 347
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
V P ++TFV +L ACSH VEEG+ YFK M Y IEP I HYG
Sbjct: 348 VSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEA 407
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+H D+E G+ K + + D G +VLL+N+Y++
Sbjct: 408 EETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSAS 467
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
G+W+ + VR+ ++ S KK PGCS IE + F Q+L + P + L
Sbjct: 468 GQWDEAKAVRQKIEVSGRKKTPGCSSIELNG-VFHQFLVGDRSHPQTKQL 516
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 186/592 (31%), Positives = 282/592 (47%), Gaps = 130/592 (21%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C KQ+ + G + + ++L + G ++YA+K+FVKI EPD ++N
Sbjct: 44 CKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWN 103
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK---- 130
+I+G ++ + V LY M K + P+ TF F+L L R+ G GK
Sbjct: 104 NMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNG----LKRDGGALACGKKLHC 159
Query: 131 -IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+VK+G N +V+N+L+ ++ CG ++ A +FD K DV +W+ + +GY R E
Sbjct: 160 HVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEE 219
Query: 190 ARSLFDEMPVRDLVS----------------------------------------WNVMI 209
+ L EM R+LVS N ++
Sbjct: 220 SIELLVEME-RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALV 278
Query: 210 TGYAKQGEMEKANEL-------------------------------FNEVPKRDVVSWNA 238
YA GEM+ A + F+++P RD +SW
Sbjct: 279 NAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTI 338
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MI GY+ G ++LE+F EM+S G PD+ TM+S+LTACA LG LE+G+ + T +D
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK-TYIDKN 397
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
V+ GNALIDMY KCG E+A +VF M RD TW+ ++ GLA +G +E+I +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
+MQ + ++P +IT++GVL AC+H+G V++ +K+F MR ++ IEP++ HYG
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
+H D + LA K++L + D Y LL
Sbjct: 518 AGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALL 577
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE---------ADDKAFLQ 482
NIYA W + +VR+ + D IKK PG SLIE A DK+ LQ
Sbjct: 578 CNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQ 629
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 186/592 (31%), Positives = 282/592 (47%), Gaps = 130/592 (21%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C KQ+ + G + + ++L + G ++YA+K+FVKI EPD ++N
Sbjct: 44 CKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWN 103
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK---- 130
+I+G ++ + V LY M K + P+ TF F+L L R+ G GK
Sbjct: 104 NMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNG----LKRDGGALACGKKLHC 159
Query: 131 -IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+VK+G N +V+N+L+ ++ CG ++ A +FD K DV +W+ + +GY R E
Sbjct: 160 HVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEE 219
Query: 190 ARSLFDEMPVRDLVS----------------------------------------WNVMI 209
+ L EM R+LVS N ++
Sbjct: 220 SIELLVEME-RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALV 278
Query: 210 TGYAKQGEMEKANEL-------------------------------FNEVPKRDVVSWNA 238
YA GEM+ A + F+++P RD +SW
Sbjct: 279 NAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTI 338
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MI GY+ G ++LE+F EM+S G PD+ TM+S+LTACA LG LE+G+ + T +D
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK-TYIDKN 397
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
V+ GNALIDMY KCG E+A +VF M RD TW+ ++ GLA +G +E+I +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
+MQ + ++P +IT++GVL AC+H+G V++ +K+F MR ++ IEP++ HYG
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
+H D + LA K++L + D Y LL
Sbjct: 518 AGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALL 577
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE---------ADDKAFLQ 482
NIYA W + +VR+ + D IKK PG SLIE A DK+ LQ
Sbjct: 578 CNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQ 629
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 166/506 (32%), Positives = 265/506 (52%), Gaps = 77/506 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+KC ++R K I A + + L +L +V G ++YAH MF ++ +P TF
Sbjct: 15 EKCISMRNFKLIHAHAFRTCLHQHAVVLGKLFRFAAVSPFGDLSYAHNMFDQMPQPTTFF 74
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
YNT+IR + S P + + +M + SI P++F+F+F+LK +R + +HG +
Sbjct: 75 YNTLIRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLLK--SRSFTMPLVHDIHGAVF 132
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK----MDVVAWSSLTAGYARRGELS 188
K+GF + V+N+LI+ +A G +A +F+ + +D+V+WS L +A+ GEL
Sbjct: 133 KFGFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVDIVSWSGLLVAHAKAGELD 192
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
+AR +FD MP RD+VSW +M++ Y+K KR
Sbjct: 193 VARKVFDGMPERDVVSWTIMLSAYSKA--------------KRP---------------- 222
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
+ L++F+EMR G PD+VT+LS+++ACA+LGD E+G+ VH + + G L N
Sbjct: 223 -HETLDLFQEMRLAGVWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFGWMVAL-CN 280
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+LIDMY KCG +E A +VF + + + TW+ ++ A HG+AE++ +F M V P
Sbjct: 281 SLIDMYGKCGCLEEAWQVFDRTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVP 340
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
+T + +LVA +H G V+EG + F+ M+ +Y +EP I HYG
Sbjct: 341 DGVTILALLVAYAHKGFVDEGIRLFESMQRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNL 400
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+HGDV +G K+LL ++ DE G Y+LL +IY + G
Sbjct: 401 LTSMPIPSNDVIWGALLGACRIHGDVGMGERVIKKLLELKPDEGGYYILLRDIYVAAGRT 460
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEA 475
++R+ M S +K PGCS +EA
Sbjct: 461 AEANEMRQAMLASGARKNPGCSWVEA 486
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 155/505 (30%), Positives = 273/505 (54%), Gaps = 74/505 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L C ++ LK+I AL+ G + D + +L+ ++ ++Y++K+ + + P T
Sbjct: 19 LLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTT 78
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F +NT+IR + ++NP ++ ++ +M + + P+ T+ F++KA ++LL + +G VH
Sbjct: 79 FNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVH 138
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
IVK G E ++F++NSLI+ +A+C D+ +A +FD + ++V W+++ GYA+ G+L+MA
Sbjct: 139 IVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMA 198
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +F+ MP +D+VSW+ +I GY K ++ E
Sbjct: 199 REVFNLMPEKDVVSWSSLIDGYVK-------GRVYGE----------------------- 228
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
A+ +FE M G ++VT++S L ACA LG LE G+ +H +++ + VL +L
Sbjct: 229 -AMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQ-TSL 286
Query: 311 IDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+DMYAKCG+I A+ VF +++ DV W+ +IGGLA HG +E++ +F EM+ + + P
Sbjct: 287 VDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVP 346
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------------- 411
EIT++ +L C+H G VEE +F +R ++ + P + HY
Sbjct: 347 DEITYLCLLSCCAHGGLVEEAWYFFDCLR-KHGMIPKVEHYACMVDALSRAGQVSEAYQF 405
Query: 412 ----------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
HG +++ ++ +RL+ + + G YV LSNIYA+ W
Sbjct: 406 LCQMPVQPTSSMLGALLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRW 465
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIE 474
+ + +R+ M+ +KK PG S IE
Sbjct: 466 DDAKNIREAMERKGVKKSPGFSFIE 490
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 174/563 (30%), Positives = 282/563 (50%), Gaps = 87/563 (15%)
Query: 11 LWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
L ++C LR+L+Q + A + +G + L+ + G++ A ++F I +
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKC--GSLTDARRVFDGIRD 159
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
+ + +I L+A Y M+ KP+K TF +L A T +G V
Sbjct: 160 RNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKV 219
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H +I K G E V SL+ +A CGD++ A V+FD + +VV W+ L AGYA++G++
Sbjct: 220 HMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQV 279
Query: 188 SMARSLFDEM---------------------PV------------------RDLVSWNVM 208
+A L ++M P+ R++ N +
Sbjct: 280 DVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNAL 339
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
IT Y K G +++A +LF ++P RDVV+W AM++GY G + +A+++F M+ G +PD
Sbjct: 340 ITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDK 399
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
+T S LT+C+ L+ GK +H L+ + L +AL+ MYAKCGS++ A VF
Sbjct: 400 MTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ-SALVSMYAKCGSMDDARLVFN 458
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
M +R+V W+ +I G A HG E++ F +M++ ++P ++TF VL AC+H G VEE
Sbjct: 459 QMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEE 518
Query: 389 GKKYFKLMRDEYNIEPNIRHYG-------------------------------------- 410
G+K+F+ M +Y I+P + HY
Sbjct: 519 GRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSAC 578
Query: 411 -VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469
+H DVE G A + +L + D+ G YV LSNIYA+ G + EKVR++M+ D+ K+PG
Sbjct: 579 RIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPG 638
Query: 470 CSLIEADDKAFLQYLFNLKPKPN 492
S IE D K ++F+++ K +
Sbjct: 639 QSWIEVDGKV---HVFHVEDKSH 658
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 181/359 (50%), Gaps = 41/359 (11%)
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
F +L+ C RL G VH I+K G + NR++ N+L+ +A CG L A +FDG
Sbjct: 99 FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIR 158
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITG------------ 211
++V+W+++ + + A ++ M + D V++ ++
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218
Query: 212 -----------------------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
YAK G++ KA +F+++P+++VV+W +I+GY G
Sbjct: 219 VHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQ 278
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
ALE+ E+M+ P+ +T S+L C LE GKKVH ++ G ++ N
Sbjct: 279 VDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYG-REIWVVN 337
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
ALI MY KCG ++ A ++F + RDV TW+ ++ G A GF +E+I +FR MQ+ ++P
Sbjct: 338 ALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKP 397
Query: 369 TEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426
++TF L +CS ++EGK + +L+ Y+++ ++ V + G + + RL+
Sbjct: 398 DKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLV 456
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 6/226 (2%)
Query: 244 VLC--GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
+LC G K+AL + M G R LL CA L LE G++VH +L
Sbjct: 70 ILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQP 129
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ L N L+ MYAKCGS+ A VF G+RDR++ +W+ +I E+ + M
Sbjct: 130 NRYLE-NTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETM 188
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIEPNIRHYGVHGDVELGRL 420
+ +P ++TFV +L A ++ ++ G+K + ++ + +EP + V + G +
Sbjct: 189 KLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDI 248
Query: 421 ANKRLLNMRKDESG--DYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
+ +++ + E + LL YA +G+ + ++ + M +++
Sbjct: 249 SKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEV 294
>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
Length = 596
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 168/558 (30%), Positives = 275/558 (49%), Gaps = 106/558 (18%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAIN-YAHKMFVKITEPDTFMYNTIIRGS 80
KQ A + INGFN+ L I + P I+ Y H + + PD+F + IR
Sbjct: 40 KQTHACIIINGFNNLEPLLVRQILLSARNNPRRISQYVHSILYHLPHPDSFSWGWAIRYF 99
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
+Q +A++LY QM++ + P+ F S L+A R Y+ G +H + KYGF
Sbjct: 100 SQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGGMSIHAESYKYGFSNCV 159
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
+V+ +L+ ++ GD+NTA +FD A+ +VV+W+S+ +G+ + G L A+ +FD++ +
Sbjct: 160 YVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISKK 219
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA---------------------- 238
D++SWN MI+GYAK G+M++A LF ++P+++ SWNA
Sbjct: 220 DVISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMP 279
Query: 239 ---------MISGYVLCG-------------------------------MNKQALEMFEE 258
MI+GY CG ++AL +F E
Sbjct: 280 ERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSE 339
Query: 259 MRSVGE--RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
M +PD +T+ S+++AC+ LGDL + + D+ + + L AL+D+YAK
Sbjct: 340 MLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQL-VTALLDLYAK 398
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CGS+++A E+F G+ +DV +S +I G +G ++I +F M ++ P TF G+
Sbjct: 399 CGSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPNLATFTGL 458
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------- 410
L AC+HAG V+EG ++F M+D + + P+ HY
Sbjct: 459 LTACNHAGLVKEGYRFFSSMKD-HGLVPSTDHYAIMVDLLGRAGRLQDAYELIKSMPMQP 517
Query: 411 -------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
VH +VELG +A + N+ + + Y LL+NIY+S G W+ V ++RK
Sbjct: 518 HSGVWGALLLACNVHNNVELGEIAAQHCFNLETNATAYYSLLANIYSSAGRWDDVGRLRK 577
Query: 458 LMDDSDIKKQPGCSLIEA 475
L + + K GCS E+
Sbjct: 578 LWKEKKLAKLSGCSWTES 595
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/505 (31%), Positives = 258/505 (51%), Gaps = 76/505 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+KC +++ LK+ A V G +DS AL L+ S + G++ +A K+F +I P +
Sbjct: 13 EKCRHMKQLKEAHAQVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICI 72
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
NT+I+ ++ + +Y+QM + + P+ +T +VLKAC L ++G HG+ V
Sbjct: 73 CNTMIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSV 132
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K GF F+ FV N+LI +++ G++ A +FD V+W+ + +GYA+ G++ AR
Sbjct: 133 KLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARM 192
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
LFDE P++D W +I+GY + N F K+
Sbjct: 193 LFDEAPMKDRGIWGSIISGYVQ-------NNCF------------------------KEG 221
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
L+MF M+S G PD+ ++S+L ACA LG +E+G VH LD V LID
Sbjct: 222 LQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVH-RYLDQLGHPLSVRLSTGLID 280
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCGS++ A ++F GM RD W+ +I G+A +G + ++ +F EM++ V+P +IT
Sbjct: 281 MYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDIT 340
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------------- 411
F+ + ACS++G E + M YN+EP HYG
Sbjct: 341 FIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKM 400
Query: 412 ----------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
HG E+ A +RL ++ + SG YVLLSN+YA+ G+
Sbjct: 401 PNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRLFHL-EHHSGAYVLLSNLYAAAGKQ 459
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIE 474
+ V ++RK+M++ + K PGCS ++
Sbjct: 460 DHVRRIRKMMENRGVDKAPGCSSVK 484
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 168/507 (33%), Positives = 270/507 (53%), Gaps = 71/507 (14%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITE 67
+ L CT + QI + G + ++ R L + S G INYA+K+FV++
Sbjct: 32 TMLQNHCTTINHFHQIYPHIIKTGLTLNPIASTRALTFCASP--SGNINYAYKLFVRMPN 89
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P+ + +NTIIR ++S P A+ L+ M I+P T+ V KA +L + + G +
Sbjct: 90 PNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQL 149
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG++VK G + ++F+ N++IY +AN G ++ A +FDG K++
Sbjct: 150 HGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGK-KLE----------------- 191
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
L+D D+V+ N MI GYAK GE++++ LF+++ R VSWN+MISGYV G
Sbjct: 192 -----LYD----HDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNG 242
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+ALE+F +M+ G + TM+SLL ACA LG L+ GK VH + V+
Sbjct: 243 KLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVH-DYIKRNHFELNVIVV 301
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-V 366
A+IDMY KCGS+E A+EVF R +S W+++I GLA +G E+ F +++ K +
Sbjct: 302 TAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLL 361
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------- 411
+P ++F+GVL AC H G + + + YF+LM ++Y IEP+I+HY
Sbjct: 362 KPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAE 421
Query: 412 ------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
H +V++ R A +R+ + ++ YVL+SN++A+
Sbjct: 422 ELIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASN 481
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIE 474
++ + R LM ++ +K+PGCS IE
Sbjct: 482 KFEEAIEQRLLMKENLTEKEPGCSSIE 508
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 166/516 (32%), Positives = 259/516 (50%), Gaps = 106/516 (20%)
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
E D F++N +I+ + +P +A+ L+ M + S+ +KF+ S VLKAC+RL + + G
Sbjct: 54 VEEDPFLWNAVIKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGM 113
Query: 126 CVHGKIVKYGFEFNRFVR-------------------------------NSLIYFHANCG 154
VHG + K G + F++ NS+I + CG
Sbjct: 114 QVHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCG 173
Query: 155 ----------------------------------DLNTASVLFDGDAKMDVVAWSSLTAG 180
+N AS LFD + D+++W+SL G
Sbjct: 174 LIESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDG 233
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
Y + + A+SLFD MP +D+V+W MI GYAK G + +A +LF+E+P+RDVV++N+M+
Sbjct: 234 YVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMM 293
Query: 241 SGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
+GYV + +A+ +F +M PD+ T++ +L+A A LG L +H ++D
Sbjct: 294 AGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKF 353
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ L G ALID Y+KCGSI++++ VF + ++ + W+ +IGGLA HG E + M
Sbjct: 354 RLGGKL-GVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLL 412
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------- 411
++++ ++P +ITF+GVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 413 QIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRS 472
Query: 412 -------------------------------HGDVELGRLANKRLLNMRKDESGDYVLLS 440
H + E G L K L +VLLS
Sbjct: 473 GSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLS 532
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
N+YAS G W V +VR M + ++K PGCS IE D
Sbjct: 533 NMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELD 568
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 179/582 (30%), Positives = 286/582 (49%), Gaps = 119/582 (20%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVK 64
+S R T+L ++K++ A + + D S++ E+I Y+ S P ++ AH +F +
Sbjct: 16 KSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALS---PQSLPKAHFVFNQ 72
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
I P ++N +I G ++S P DA+ Y M I+ + TF F+ K+C R+ G
Sbjct: 73 IQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQG 132
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
V +K GFE FV N+LI+ + G+L A +FDG + DVV+W+S+ GY +
Sbjct: 133 QMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQF 192
Query: 185 GELSMARSLFDEMP---------------------------------------VRDLVSW 205
LF EM V DL
Sbjct: 193 NRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLG 252
Query: 206 NVMITGYAKQGEME-------------------------------KANELFNEVPKRDVV 234
N +I Y ++G ++ A +LFNE+P RDV+
Sbjct: 253 NTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVI 312
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
SW +MI GY L + +A+++F+EM +PD++T+ + L+ACA LG L+ G+ VH +
Sbjct: 313 SWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYI 372
Query: 295 L--DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
D+ S V GN+LIDMY KCG +E+A++VF M+ RD +W+++I GLA +GFAE
Sbjct: 373 RKHDIKS---DVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAE 429
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
++ +F +M + + PT TFVGVL+AC+H G V++G ++FK M + Y + P ++HYG
Sbjct: 430 SALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCV 489
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG++ L + +K+LL + +
Sbjct: 490 VDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNN 549
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
G+YVL S+ YA W+ V K+RKLM+ ++++K S IE
Sbjct: 550 GNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEV 591
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 170/551 (30%), Positives = 273/551 (49%), Gaps = 84/551 (15%)
Query: 8 SSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
S L + ++ R+ QI + +G D +L+Y S+ ++ +F +I +
Sbjct: 31 SLSLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKLLYY-SLSHDHDFAFSRTLFFQIHK 89
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P+ F +N + R ++S P + + LY M + P+ ++F FVLKAC RL + G +
Sbjct: 90 PNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREI 149
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM--DVVAWSSLTAGYARRG 185
H +K G + FV+N+LI ++CG + A +FD + DVV+W+S+ +GY +
Sbjct: 150 HSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSH 209
Query: 186 ELSMARSLFDEM-------P---------------------------------VRDLVSW 205
+A +F E+ P V D+
Sbjct: 210 RYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVG 269
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
+ +I Y+K G++E A ++F+ +P R+ V W +MI+GY + K+A+E+F EM+ G
Sbjct: 270 SSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFA 329
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
D T+ +L+AC G L G+ +H + S + NALI MY+KCG I++A+E
Sbjct: 330 ADAATIACVLSACGHWGALAQGRWIH-LYCERNSIEMDLNARNALIGMYSKCGDIQKALE 388
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHAG 384
+F G+ D+ +WS +I GLA +G +++++ +F +M+ + +RP EITF+GVL AC+H G
Sbjct: 389 IFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGG 448
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYGV--------------------------------- 411
V++G YF M YN+ P I HYG
Sbjct: 449 FVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSL 508
Query: 412 ------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
HG++EL A K++ + G VLLSN+YAS W V++VRK M IK
Sbjct: 509 LFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIK 568
Query: 466 KQPGCSLIEAD 476
KQPGCS +E D
Sbjct: 569 KQPGCSFVEID 579
>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
Length = 577
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 171/516 (33%), Positives = 255/516 (49%), Gaps = 106/516 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF--- 125
D F++N +I+ + +P A+ L+ M + + +KF+ S VLKAC+RL + G
Sbjct: 57 DPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKEGMQVH 116
Query: 126 ----------------CVHGKIVK---YGFEFNRFVR---------NSLIYFHANCG--- 154
C+ G +K GF F R NS+I + CG
Sbjct: 117 GFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVE 176
Query: 155 -------------------------------DLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
+N AS LFD + D+++W+S+ GY +
Sbjct: 177 SAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVK 236
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G + A+ LFD MP RD+V+W +MI GY K G + +A LF+++P RDVV++N+M+SG+
Sbjct: 237 HGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGF 296
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
V + +ALE+F M PD+ T++ +L+A A LG L +H +++ ++
Sbjct: 297 VQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLS 356
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDMY+KCGSI+ A+ VF G+ + + W+ +IGGLA HG E + M +++
Sbjct: 357 GKL-GVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIE 415
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
R ++P ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 416 RRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSI 475
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E G L K L+ YVLLSN+Y
Sbjct: 476 ELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMY 535
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
AS G W V +VR +M + I+K PGCS IE D +
Sbjct: 536 ASNGMWKDVRRVRTMMKEKKIEKLPGCSWIELDGRV 571
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
+D WNA+I + ++AL +F M G D +M +L AC+ LG + G +V
Sbjct: 56 KDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKEGMQV 115
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
H L+ + L N LI +Y KCG + A +VF M RD +++++I G G
Sbjct: 116 HGFLIKSRTWSDLFLQ-NCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGL 174
Query: 351 AEESIAMFREMQRLK 365
E + +F M R K
Sbjct: 175 VESAGELFDLMPREK 189
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 165/504 (32%), Positives = 263/504 (52%), Gaps = 74/504 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
L +CTN++ L++I A + G + +A R L + S G INYA+ +F I P+
Sbjct: 31 LQTQCTNMKDLQKIHAHIIKTGLAHHTVAASRVLTFCASS--SGDINYAYLLFTTIPSPN 88
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+ +NTIIRG ++S P A+ L+ M S+ P + T+ V KA +L G +HG
Sbjct: 89 LYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHG 148
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
++VK G E ++F++N++IY +AN G L+ A +FD +DVVA +S+ G A+ GE+
Sbjct: 149 RVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDK 208
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
+R LFD MP R V+WN MI+GY + +
Sbjct: 209 SRRLFDNMPTRTRVTWNSMISGYVRNKRL------------------------------- 237
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
+ALE+F +M+ P + TM+SLL+ACA LG L+ G+ VH + V+ A
Sbjct: 238 MEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVH-DYVKRGHFELNVIVLTA 296
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
+IDMY KCG I +AIEVF R +S W+++I GLA +G+ ++I F +++ ++P
Sbjct: 297 IIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPD 356
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------------ 411
++F+GVL AC + G V + + YF LM ++Y IEP+I+HY
Sbjct: 357 HVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLI 416
Query: 412 ---------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
HG+VE+ + A +R+ + ++ Y+L+SN+ A+ ++
Sbjct: 417 KGMPLKADFIIWGSLLSSCRKHGNVEIAKRAAQRVCELNPSDASGYLLMSNVQAASNQFE 476
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIE 474
+ R LM + +K+PGCS IE
Sbjct: 477 EAMEQRILMRERLAEKEPGCSSIE 500
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 179/593 (30%), Positives = 279/593 (47%), Gaps = 112/593 (18%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + CT++ +K+I A + G SD AL L+ ++ ++Y K+ +
Sbjct: 60 LLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNV 119
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F +N IRG +S+NP++AV LY M K S P+ +T+ + K C + G
Sbjct: 120 FSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILG 179
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+++ GF+ + FV N++I+ +CG+L A LFD D+V+W+S+ GY R G
Sbjct: 180 HVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADE 239
Query: 190 ARSLF----------DEMPVRDLVS-----------------------------WNVMIT 210
A L+ DE+ + +VS N ++
Sbjct: 240 AFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMD 299
Query: 211 GYAKQGEMEKANELFNEVPK-------------------------------RDVVSWNAM 239
Y K +E A LF + K +DVV WNA+
Sbjct: 300 MYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNAL 359
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
I G+V +K+AL +F EM++ PD +T+++ L+AC+ LG L+VG +H +D +
Sbjct: 360 IGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMH-HYVDKHN 418
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
V G AL+DMYAKCG+I++AI+VF M R+ TW+ +I GLA HG +I+ F
Sbjct: 419 LTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFS 478
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
EM + + P EITF+GVL AC H G V++G+ YF M +Y I P ++HY
Sbjct: 479 EMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRA 538
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
+HG+V +G A +LL + + G YVLL+
Sbjct: 539 GFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLA 598
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
N+Y W + KVRK+M++ ++K PGCS IE + + ++ K P S
Sbjct: 599 NMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVY-DFIIRDKSHPQS 650
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 179/593 (30%), Positives = 279/593 (47%), Gaps = 112/593 (18%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + CT++ +K+I A + G SD AL L+ ++ ++Y K+ +
Sbjct: 60 LLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNX 119
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F +N IRG +S+NP++AV LY M K S P+ +T+ + K C + G
Sbjct: 120 FSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILG 179
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+++ GF+ + FV N++I+ +CG+L A LFD D+V+W+S+ GY R G
Sbjct: 180 HVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADE 239
Query: 190 ARSLF----------DEMPVRDLVS-----------------------------WNVMIT 210
A L+ DE+ + +VS N ++
Sbjct: 240 AFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMD 299
Query: 211 GYAKQGEMEKANELFNEVPK-------------------------------RDVVSWNAM 239
Y K +E A LF + K +DVV WNA+
Sbjct: 300 MYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNAL 359
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
I G+V +K+AL +F EM++ PD +T+++ L+AC+ LG L+VG +H +D +
Sbjct: 360 IGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMH-HYVDKHN 418
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
V G AL+DMYAKCG+I++AI+VF M R+ TW+ +I GLA HG +I+ F
Sbjct: 419 LTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFS 478
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
EM + + P EITF+GVL AC H G V++G+ YF M +Y I P ++HY
Sbjct: 479 EMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRA 538
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
+HG+V +G A +LL + + G YVLL+
Sbjct: 539 GFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLA 598
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
N+Y W + KVRK+M++ ++K PGCS IE + + ++ K P S
Sbjct: 599 NMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVY-DFIIRDKSHPQS 650
>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
Length = 690
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 189/585 (32%), Positives = 282/585 (48%), Gaps = 126/585 (21%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFV 63
H + L K L + QI + + GF ++ S +I +S S P + +A +F+
Sbjct: 71 HPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKP-LVEFARYLFM 129
Query: 64 KI-------TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
+ + F++N II+ + ++P +A ++ M + + +KF+FS VLKAC+
Sbjct: 130 SRHFGRKHRKQDNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACS 189
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF------------- 163
RL G +HG + + F++N L+ + CG L A LF
Sbjct: 190 RLGLIKEGMQIHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNS 249
Query: 164 --DGDAKM------------------DVVAWSSLTAGYARRGE-LSMARSLFDEMPVRDL 202
DG K ++++W+S+ +GYAR E L +A LF+EMP RDL
Sbjct: 250 MIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDL 309
Query: 203 VSWNVMITG-------------------------------YAKQGEMEKANELFNEVPKR 231
+SWN MI G YAK GE++ A LF+E+P+R
Sbjct: 310 ISWNSMIDGCVKCGKMENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPER 369
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLSLLTACADLGDLEVGKKV 290
DV+S NAM++GYV G +AL F +M S E P + T+L L+A A LG + G +
Sbjct: 370 DVISCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVAL 429
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
HC + D +++ L G ALIDMYAKCGSI+ A+ + W+ +J GLA HG
Sbjct: 430 HCYIEDNGFSLSEKL-GXALIDMYAKCGSIDNAL----------IDHWNAIJXGLAIHGL 478
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
E + +F EM++L V+P +ITF+GVL AC+HAG V+EG F LMR + +EP ++HYG
Sbjct: 479 GEVAFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYG 538
Query: 411 V---------------------------------------HGDVELGRLANKRLLNMRKD 431
H + +G K L+++
Sbjct: 539 CMVDILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSY 598
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
YVLLSNIYA G WN V ++R +M D+KK PGCS IE +
Sbjct: 599 NPSSYVLLSNIYAXFGMWNDVYRIRMMMKQRDLKKIPGCSQIELE 643
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 168/466 (36%), Positives = 245/466 (52%), Gaps = 72/466 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A K+F K+ E D +NT++ AQ +A+ Y++ + I+ N F+F+ VL
Sbjct: 140 GMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVL 199
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C +L + VHG+I+ GF N VV
Sbjct: 200 TVCVKLKEVGLTRQVHGQILVAGFLSN-------------------------------VV 228
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
SS+ Y + G + AR LFDEM RD+++W M++GYAK G+M+ ANELF E+P+++
Sbjct: 229 LSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKN 288
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW A+ISGY GM +ALE+F +M RPD T S L ACA + L+ GK++H
Sbjct: 289 PVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHA 348
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHGFA 351
LL + ++ +ALIDMY+KCGS+ +VF M ++ DV W+T+I LA HG
Sbjct: 349 YLLRINFQPNTIV-VSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCG 407
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
EE+I M +M R +P +ITFV +L ACSH+G V++G +F+ M +Y I P+ HY
Sbjct: 408 EEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYAC 467
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+HG +ELGR A +RL+ +
Sbjct: 468 LIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQS 527
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
S YVLLS+IYA G W V+KVR+LM++ +KK+ S +E ++K
Sbjct: 528 STAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENK 573
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 166/320 (51%), Gaps = 47/320 (14%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+ G+ AR +FD+M R+L SWN M++GYAK G ++ A +LF+++P++DVVSWN M+
Sbjct: 105 YAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMV 164
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+ CG +AL + E R +G + + + +LT C L ++ + ++VH +L +
Sbjct: 165 IAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQIL-VAGF 223
Query: 301 VAKVLHGNALIDMYAKC-------------------------------GSIERAIEVFLG 329
++ V+ ++++D Y KC G ++ A E+F+
Sbjct: 224 LSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVE 283
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M +++ +W+ LI G A +G +++ +F +M VRP + TF L AC+ ++ G
Sbjct: 284 MPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHG 343
Query: 390 KK-YFKLMRDEYNIEPN-------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
K+ + L+R N +PN I Y G + +GR ++ ++ ++ D VL +
Sbjct: 344 KQIHAYLLR--INFQPNTIVVSALIDMYSKCGSLGIGR----KVFDLMGNKL-DVVLWNT 396
Query: 442 IYASRGEWNRVEKVRKLMDD 461
I ++ + E+ +++DD
Sbjct: 397 IISALAQHGCGEEAIQMLDD 416
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 170/497 (34%), Positives = 260/497 (52%), Gaps = 77/497 (15%)
Query: 56 NYAHKMFVKITEPDT---FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
++A +F + E + F +NT++R A + +P ++ +++M + ++ P+ +TF VL
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAA-SPRRSLLYFSRMRRVAVAPDAYTFPAVL 123
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC +G VHG+ V+ G + + F RN+LI F+ GD + +FD + D+V
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVR-DLV 182
Query: 173 AWSSLTAGYARRGELSM--------------------------------ARSLFDEMPVR 200
+W+S+ AGY GE+ + AR LFD+MP R
Sbjct: 183 SWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDR 242
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
DLV WN MI GYA+ G M++A LF E+P+R+V+SW+ +I GYV G +ALE F+ M
Sbjct: 243 DLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRML 302
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
S G +PD V + + ACA LG LE G+ +H + L+ + V+ ALIDMY KCG +
Sbjct: 303 SCGIKPDRVAAVGAVAACAQLGALEQGRWLH-SYLEKKKVLFDVVVQTALIDMYVKCGRL 361
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ A +F M + V TW+ +I GL HG+ ++I +F +M+ + +++ + VL +C
Sbjct: 362 DLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVLTSC 421
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------------------------- 411
+HAG V EG F M + +EP + HYG
Sbjct: 422 THAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPEL 481
Query: 412 ----------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
H VEL L+ +RL ++ D+SG YVLLSNIYA G W+ V ++RKLM
Sbjct: 482 WGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSA 541
Query: 462 SDIKKQPGCSLIEADDK 478
+KK G S+IE D +
Sbjct: 542 EGMKKNIGRSVIEVDGQ 558
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 173/530 (32%), Positives = 267/530 (50%), Gaps = 86/530 (16%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALV---TINGFNSDSSALRELIYSGSVVIPGAINY 57
N T ++ S L ++C NL+ +K I + I L+Y S + NY
Sbjct: 15 NLTLKNTLSTLIEQCKNLKEIKIIHTHILKSPILHTRDQYYLFTRLLYFCSFSNYASFNY 74
Query: 58 AHKMFVKITEPDTFMYNTIIR------GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV 111
A+ +F I P+ +YN +IR G S A+ LY QM I PN TF F+
Sbjct: 75 ANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIVPNNLTFPFL 134
Query: 112 LKACTRLLYR-NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
+K C+RL Y +G +H ++K+GF + FV NSLI N G A
Sbjct: 135 VKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNA----------- 183
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
R +FDEM VRD+VSWN M+ GY + GE+E A LF ++
Sbjct: 184 --------------------RKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNG 223
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE----RPDDVTMLSLLTACADLGDLEV 286
R++++WN++I+G V G K++LE+F EM+ + +PD +T+ S+L+ACA LG ++
Sbjct: 224 RNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDH 283
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
GK VH L V+ G AL++MY KCG +++AIE+F M ++D S W+ +I A
Sbjct: 284 GKWVH-AYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFA 342
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HGF +++ F EM++ V+P +TFVG+L ACSH+G VE+G+ F +M+ Y+IEP I
Sbjct: 343 LHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQI 402
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HY +HG+++LG L++
Sbjct: 403 YHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIKLGEKVAHYLID 462
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK-KQPGCSLIEAD 476
+ Y+ L +IY G+++ +++R M + I+ K PGCS+IE +
Sbjct: 463 LEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSIIEIN 512
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 180/530 (33%), Positives = 272/530 (51%), Gaps = 73/530 (13%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +KC + LK++ L+ D L L+ + G +NYA +F +I P
Sbjct: 11 LLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSL 70
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+++N++I+G + S++P +A+ +Y +M + P+ FTF FVLKAC+ + N+G CVH
Sbjct: 71 YIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNC 130
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
IVK GFE + + +L+ +A CGD+ A +FD K +VVAW+SL AG S A
Sbjct: 131 IVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEA 190
Query: 191 RSLFDEMPV-----RDLVSWNVMITG------------YAKQGEME----KANELFNEVP 229
++ +M + ++ NV++ + + G+M ++N FN
Sbjct: 191 VRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFN--- 247
Query: 230 KRDVVSWNAMISGYVLCGMNK-----QALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
V+ A++ Y C N+ +AL++F +MR G PD T L ++ ACA LG L
Sbjct: 248 ---VILATAIVDMYAKCAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGAL 304
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
G+ +H + T+ G AL+DMYAK G ERA +VF ++ +DV+ W++LI G
Sbjct: 305 VSGQALH-AYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIG 363
Query: 345 LAFHGFAEESIAMFREMQR-LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403
LA HG EE++ F++MQ + P EIT++GVL ACSH GKVE+GK +F M++ + IE
Sbjct: 364 LAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIE 423
Query: 404 PNIRHYGVHGDV--------ELGRLANK-----------RLLN----------------- 427
P +HYG D+ E RL K LLN
Sbjct: 424 PTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRR 483
Query: 428 ---MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ D SG YVLLSNIYA W V+ R+LM + I+K G S +E
Sbjct: 484 VRELEVDGSGVYVLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVE 533
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 249/468 (53%), Gaps = 79/468 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I ++ +F + +PD F++ I ++ + A LY Q+ I PN+FTFS +L
Sbjct: 78 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLL 137
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
K+C+ G +H ++K+G + +V L+ DV
Sbjct: 138 KSCST----KSGKLIHTHVLKFGLGIDPYVATGLV----------------------DV- 170
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
YA+ G++ A+ +FD MP R LVS MIT YAKQG +E A LF+ + +RD
Sbjct: 171 --------YAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERD 222
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVH 291
+VSWN MI GY G AL +F+++ + G+ +PD++T+++ L+AC+ +G LE G+ +H
Sbjct: 223 IVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIH 282
Query: 292 CTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
+ + KV G LIDMY+KCGS+E A+ VF +D+ W+ +I G A HG+
Sbjct: 283 VFVKSSRIRLNVKVCTG--LIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGY 340
Query: 351 AEESIAMFREMQRLK-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
+++++ +F EMQ + ++PT+ITF+G L AC+HAG V EG + F+ M EY I+P I HY
Sbjct: 341 SQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHY 400
Query: 410 G---------------------------------------VHGDVELGRLANKRLLNMRK 430
G +HGD LG+ + L+ +
Sbjct: 401 GCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNI 460
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
SG YVLLSNIYAS G++ V KVR LM + I K+PG S IE ++K
Sbjct: 461 KNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENK 508
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 35/211 (16%)
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
YA G++ + LF++ D+ + A I+ + G+ QA ++ ++ S P++ T
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGV------------AK--------------- 303
SLL +C+ + GK +H +L G+ AK
Sbjct: 133 FSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 304 ---VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
++ A+I YAK G++E A +F M +RD+ +W+ +I G A HGF +++ +F++
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 361 -MQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ K +P EIT V L ACS G +E G+
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGR 279
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 246/463 (53%), Gaps = 71/463 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A+ +F K D +N++I G + ++A+ +Y +ME ++PN+ T ++
Sbjct: 207 GELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMI 266
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+C+++ N+G H I ++G EF + N+L+ + CG+L TA
Sbjct: 267 SSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTA------------- 313
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
R LFD M + LVSW M+ GYA+ G ++ A E+ ++P++
Sbjct: 314 ------------------RVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKS 355
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VV WNA+ISG V K+AL +F EM+ PD VTM++ L+AC+ LG L+VG +H
Sbjct: 356 VVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHH 415
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ + L G AL+DMYAKCG+I RA++VF + R+ TW+ +I GLA HG A+
Sbjct: 416 YIERHKLSIDVAL-GTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQ 474
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
++++ F +M + + P EITF+GVL AC H G VEEG+KYF M ++N+ P ++HY
Sbjct: 475 DALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCM 534
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
V+G+V++G +LL + +S
Sbjct: 535 VDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDS 594
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G+YVLL+++Y+ W RKLM+D ++K PGCSL+E +
Sbjct: 595 GNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEIN 637
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 152/322 (47%), Gaps = 62/322 (19%)
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD-----GD 166
L CTR+LYR +K E N F N+ I + GD+ +L+ G
Sbjct: 107 LDYCTRILYR----------IK---ELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGT 153
Query: 167 AKMDVVAWSSLTAG----YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222
K D + L G Y+ L + + D+ N IT GE+ A
Sbjct: 154 LKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAY 213
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
++FN+ RD+V+WN+MI+G V G+ +A+++++EM + RP+++TM+ ++++C+ +
Sbjct: 214 DVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQ 273
Query: 283 DLEVGKKVHCTL----LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
DL +GK+ HC + L+ T + NAL+DMY KCG + A +F M + + +W
Sbjct: 274 DLNLGKEFHCYIKEHGLEFTIPLT-----NALMDMYVKCGELLTARVLFDNMAQKTLVSW 328
Query: 339 STLIGGLAFHGF-------------------------------AEESIAMFREMQRLKVR 367
+T++ G A GF +E++A+F EMQ +
Sbjct: 329 TTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIE 388
Query: 368 PTEITFVGVLVACSHAGKVEEG 389
P ++T V L ACS G ++ G
Sbjct: 389 PDKVTMVNCLSACSQLGALDVG 410
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 176/506 (34%), Positives = 263/506 (51%), Gaps = 75/506 (14%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
++CT +R LK + A + + L +L +V G + YAH+MF ++ P TF
Sbjct: 15 ERCTCMRDLKLLHAHAFRTRLHDHTVVLGKLFRFAAVSPLGDLRYAHRMFDQMPHPTTFF 74
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
YNT+IR A S P + + M + ++ P++F+F+F+LK+ +R VHG ++
Sbjct: 75 YNTLIRAHAHSTTPSLSSLSFNLMRQNNVAPDQFSFNFLLKSRSRTTPLTHHNDVHGAVL 134
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM----DVVAWSSLTAGYARRGELS 188
K+GF + V+N LI+F+AN G A +F+ ++ DVV+WS L + + GEL
Sbjct: 135 KFGFCRHLHVQNGLIHFYANRGMTLLARRVFEDVLQLGLEVDVVSWSGLLVAHVKAGELE 194
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
+AR +FDEMP RD+VSW M+TGY++ KR
Sbjct: 195 VARRVFDEMPQRDVVSWTAMLTGYSQA--------------KRP---------------- 224
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
++ALE+F EMR G PD+VTM+SL++ACA LGD+E G VH + + G L N
Sbjct: 225 -REALELFGEMRRSGVWPDEVTMVSLVSACASLGDMETGMMVHRFVEENGFGWMVAL-CN 282
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
ALIDMY KCG +E A VF GM + + TW+T++ A +G A+E+ +F M V P
Sbjct: 283 ALIDMYGKCGCLEEAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVP 342
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
+T + +LVA +H G V+EG + F+ M +Y +EP I HYG
Sbjct: 343 DSVTLLALLVAYAHKGLVDEGIRLFESMDRDYGVEPRIEHYGAVIDMLGRAGRLQEAYDL 402
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+HGDVE+G K+LL ++ DE G Y+LL +IY + G+
Sbjct: 403 LTNIPIPCNDAVWGALLGACRIHGDVEMGEKLIKKLLELKPDEGGYYILLRDIYVAAGQT 462
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEA 475
+ R+ M S +K PGCS +E
Sbjct: 463 VEANETRQAMLASRARKNPGCSWVEG 488
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 176/520 (33%), Positives = 263/520 (50%), Gaps = 97/520 (18%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
+C++L +KQI A V + +S ++LI + S+ + A +F +I +PD +Y
Sbjct: 26 RCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLC--RQMTLAVNVFNQIQDPDVLLY 83
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
NT+IR ++ PL A ++ +M+ + + FT+ F+LKAC+ ++ + +H ++ K
Sbjct: 84 NTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEK 143
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF + FV NSLI Y + GEL AR L
Sbjct: 144 MGFCLDIFVPNSLI-------------------------------DSYFKLGELGEARRL 172
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FDEMP RD VSWN ++ GY K GEM A ELF ++P R+VVSW+ M +G
Sbjct: 173 FDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGL---------- 222
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
+ DD T++S+L+ACA G L +GK+VH ++ + T NALIDM
Sbjct: 223 -----------KFDDGTVISILSACAVSGLLGLGKRVHASI-ERTRFKCSTPVSNALIDM 270
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YAKCGS+E A+ +F GM +DV +W+ +I GLA HG E+++ +F M+ P ++TF
Sbjct: 271 YAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTF 330
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGR-------------- 419
VGVL AC+HAG V+EG YF M +Y + P + HYG D+ LGR
Sbjct: 331 VGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDL-LGRGGRLKEAFRLVHSM 389
Query: 420 -----------------------LANK---RLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
LA + RL+ +SG+ +LSNIYA+ G+W+
Sbjct: 390 PLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFA 449
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
+R M + I+K G S IE DD+ +F+ + P S
Sbjct: 450 NIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFD-RSHPKS 488
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 246/463 (53%), Gaps = 71/463 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A+ +F K D +N++I G + ++A+ +Y +ME ++PN+ T ++
Sbjct: 207 GELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMI 266
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+C+++ N+G H I ++G EF + N+L+ + CG+L TA
Sbjct: 267 SSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTA------------- 313
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
R LFD M + LVSW M+ GYA+ G ++ A E+ ++P++
Sbjct: 314 ------------------RVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKS 355
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VV WNA+ISG V K+AL +F EM+ PD VTM++ L+AC+ LG L+VG +H
Sbjct: 356 VVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIH- 414
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
++ V G AL+DMYAKCG+I RA++VF + R+ TW+ +I GLA HG A+
Sbjct: 415 HYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQ 474
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
++++ F +M + + P EITF+GVL AC H G VEEG+KYF M ++N+ P ++HY
Sbjct: 475 DALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCM 534
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
V+G+V++G +LL + +S
Sbjct: 535 VDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDS 594
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G+YVLL+++Y+ W RKLM+D ++K PGCSL+E +
Sbjct: 595 GNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEIN 637
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 152/322 (47%), Gaps = 62/322 (19%)
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD-----GD 166
L CTR+LYR +K E N F N+ I + GD+ +L+ G
Sbjct: 107 LDYCTRILYR----------IK---ELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGT 153
Query: 167 AKMDVVAWSSLTAG----YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222
K D + L G Y+ L + + D+ N IT GE+ A
Sbjct: 154 LKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAY 213
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
++FN+ RD+V+WN+MI+G V G+ +A+++++EM + RP+++TM+ ++++C+ +
Sbjct: 214 DVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQ 273
Query: 283 DLEVGKKVHCTL----LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
DL +GK+ HC + L+ T + NAL+DMY KCG + A +F M + + +W
Sbjct: 274 DLNLGKEFHCYIKEHGLEFTIPLT-----NALMDMYVKCGELLTARVLFDNMAQKTLVSW 328
Query: 339 STLIGGLAFHGF-------------------------------AEESIAMFREMQRLKVR 367
+T++ G A GF +E++A+F EMQ +
Sbjct: 329 TTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIE 388
Query: 368 PTEITFVGVLVACSHAGKVEEG 389
P ++T V L ACS G ++ G
Sbjct: 389 PDKVTMVNCLSACSQLGALDVG 410
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 169/505 (33%), Positives = 256/505 (50%), Gaps = 78/505 (15%)
Query: 18 LRTLKQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
+ +KQ A + + G +D +S L + S +P +YA ++ I+ P F N
Sbjct: 44 ITQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPS--DYALSIYNSISHPTVFATN 101
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
+IR + P ++ LY+ M + + PNK T +FVL+AC+ G V ++K
Sbjct: 102 NMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIK 161
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF + FVRN+LI+ + C + +A + +
Sbjct: 162 LGFVKDVFVRNALIHLYCTCCRVESA-------------------------------KQV 190
Query: 194 FDEMPV-RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
FDE+P RD+VSWN MI G+ + G++ A +LF E+P++DV+SW +ISG V G ++A
Sbjct: 191 FDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKA 250
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
L+ F+E+ RP++ ++SLL A A LG LE GK++H + + L G AL+D
Sbjct: 251 LDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASL-GTALVD 309
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCG I+ + +F M ++D +W+ +I GLA HG +E++A+F + P +T
Sbjct: 310 MYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVT 369
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+GVL ACS AG V EGK +FKLM D Y IEP + HYG
Sbjct: 370 FIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRM 429
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
VHG +ELG +L+ M +G YV L+ I+A +W V
Sbjct: 430 PAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVS 489
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDK 478
KVR+LM + + K G SLIEA+ +
Sbjct: 490 KVRRLMAERNSNKIAGWSLIEAEGR 514
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 133/301 (44%), Gaps = 25/301 (8%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP----GAINYAHKMFVKI 65
L+ C + + KQ+ F+ S+ R+++ S+++ G I+ A K+FV++
Sbjct: 176 HLYCTCCRVESAKQV--------FDEVPSS-RDVVSWNSMIVGFVRLGQISVAQKLFVEM 226
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
E D + TII G Q+ A+ + ++ + ++PN+ +L A +L G
Sbjct: 227 PEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGK 286
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H F + +L+ +A CG ++ + LFD + D +W+ + G A G
Sbjct: 287 RIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHG 346
Query: 186 ELSMARSLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNEVP-----KRDVVSW 236
A +LF++ + NV ++T ++ G + + F + + ++ +
Sbjct: 347 LGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHY 406
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
M+ G A+EM M + PD V S+L +C G +E+G+++ L+
Sbjct: 407 GCMVDLLSRAGFVYDAVEMINRMPA---PPDPVLWASVLGSCQVHGFIELGEEIGNKLIQ 463
Query: 297 M 297
M
Sbjct: 464 M 464
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 174/576 (30%), Positives = 278/576 (48%), Gaps = 113/576 (19%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C ++ LKQIQ+ + G D + +L+ + G + YA K+F + +P F+
Sbjct: 151 RNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFV 210
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
YN +++ A+ + L+ Q+ + + P+ FT+ FVLKA L G V G IV
Sbjct: 211 YNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIV 270
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K G + + +V NSLI + ++ A LFD D V+W+ + +GY R A +
Sbjct: 271 KTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAIN 330
Query: 193 LFDEMP----------------------------------VRDLVSW-----NVMITGYA 213
F EM VR + + N ++ YA
Sbjct: 331 TFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYA 390
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE---------------- 257
K G + A +F+E+ ++V+ W +MISGY+ CG ++A ++F+
Sbjct: 391 KCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMING 450
Query: 258 ---------------EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
EM+ +PD T+++LLT CA LG LE GK +H LD
Sbjct: 451 YVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIH-GYLDENRITM 509
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
V+ G ALI+MY+KCG +++++E+F + D+D ++W+++I GLA +G E++ +F EM+
Sbjct: 510 DVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEME 569
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------ 410
R+ +P +ITF+GVL ACSH G VEEG+++F M+ + IEP + HYG
Sbjct: 570 RVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLL 629
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
+H +V++G K+L N+ +S + LL+
Sbjct: 630 DEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLA 689
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
NIYAS W +KVR+ M + +KK PGCSLIE D
Sbjct: 690 NIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVD 725
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 165/539 (30%), Positives = 278/539 (51%), Gaps = 83/539 (15%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
+H + L L+ LKQI + ING ++ L + + S +V P + Y++++ +
Sbjct: 9 KHPTIALIDSFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQ 68
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS--IKPNKFTFSFVLKACTRLLYRN 122
+P F N++IR ++S P + Y ++ + + + P+ +TF+F+++ C +
Sbjct: 69 CAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSACE- 127
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
G VHG ++K+GFE++ V + LI+ YA
Sbjct: 128 AGPAVHGALIKHGFEYDPHVESGLIFM-------------------------------YA 156
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
LS +F+ + DLV M++ AK G++ A LF+ +P+RD VSWNAMI+G
Sbjct: 157 EMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAG 216
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMT 298
Y G +++AL +F+ M+ G + ++V+M+S++TAC LG L+ GK H + + MT
Sbjct: 217 YAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMT 276
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
+ G AL+DMY KCG+++RA++VF M +++V TWST IGGLA +G+ ++ + +F
Sbjct: 277 VNL-----GTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELF 331
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
M+ + P EITF+ VL CS G V+EG+ +F M+ ++ IEP + HYG
Sbjct: 332 SFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGR 391
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
++ ++ELG A+++L+ + G YV L
Sbjct: 392 AGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSL 451
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLDT 498
SNIYA G W+RV VR+ M I K PGCS++E + + ++ K P+ ++T
Sbjct: 452 SNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVH-EFFSGDKSHPSYDVIET 509
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 160/539 (29%), Positives = 277/539 (51%), Gaps = 74/539 (13%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+R +H + L T + ++QI A + ++G D + + + + ++ ++YA++
Sbjct: 10 SRIVKHPAISLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQ 69
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS--IKPNKFTFSFVLKACTRL 118
+ + +P F N++IR +S P + Y+++ +KP+ +T +F+++ACT L
Sbjct: 70 ILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGL 129
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
R G VHG ++ GF+ + V+ LI +A G L++
Sbjct: 130 GMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSC------------------- 170
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
+F+ + D V M+T A+ G++ A +LF +P++D ++WNA
Sbjct: 171 ------------HKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNA 218
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MISGY G +++AL +F M+ G + + V+M+S+L+AC LG L+ G+ H + ++
Sbjct: 219 MISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAH-SYIERN 277
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
V G L+D+YAKCG +++A+EVF GM +++V TWS+ + GLA +GF E+ + +F
Sbjct: 278 KIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLF 337
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
M++ V P +TFV VL CS G V+EG+K+F MR+E+ IEP + HYG
Sbjct: 338 SLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYAR 397
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
++ ++ELG LA+K++L + G YVLL
Sbjct: 398 AGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLL 457
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLDT 498
SNIYA +W+ V VR+ M ++KQPGCS++E + + ++ K P +D
Sbjct: 458 SNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVH-EFFVGDKSHPKYNEIDA 515
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 151/312 (48%), Gaps = 40/312 (12%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N ++ Y K G++ + +LF ++ +++VSWN MI ++ G+ ++ L F R VG +
Sbjct: 676 NALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLK 735
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD T L++L C D+G + + + +H L+ A AL+D+YAK G +E +
Sbjct: 736 PDQATFLAVLRVCEDIGVVRLSQGIH-GLIMFCGFNANTCITTALLDLYAKLGRLEDSST 794
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VFL + D W+ ++ A HG+ ++I F M + P +TF +L ACSH+G
Sbjct: 795 VFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGL 854
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYG----------------------------------- 410
VEEG+ YF+ M Y IEP + HY
Sbjct: 855 VEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALL 914
Query: 411 ----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
V+ D +LG A KRL + + +Y++LSNIY++ G W ++R LM + +
Sbjct: 915 GACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVR 974
Query: 467 QPGCSLIEADDK 478
G S IE +K
Sbjct: 975 ASGYSYIEHGNK 986
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 19/236 (8%)
Query: 157 NTASVLFDGDA--KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK 214
+T V+FD D K D + S A A SL ++P+R + N+ + G
Sbjct: 532 DTTPVMFDIDEEEKEDALCLHSEKAAIAFG-----IMSLKADVPIR--IVKNLRVCGDCH 584
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS-VGERPDDVTMLS 273
Q M + E+ RD ++ G G + L MRS VG RP++VT LS
Sbjct: 585 QVSMMISKIFNREIIVRDRNRFHHFKDGRGYLGKCFEVLSRM--MRSEVGFRPNEVTFLS 642
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGV---AKVLHGNALIDMYAKCGSIERAIEVFLGM 330
+++AC G+ E G +H L M SGV KV+ NAL+++Y K G + + ++F +
Sbjct: 643 MISACVHGGNKEEGVCIHG--LVMKSGVLEEVKVV--NALMNLYGKTGDLISSCKLFEDL 698
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
+++ +W+T+I +G AEE +A F + + ++P + TF+ VL C G V
Sbjct: 699 SVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVV 754
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 120/283 (42%), Gaps = 16/283 (5%)
Query: 28 VTINGFNSDSSALRELIYSGSVV----IPGAINYAHKMFVKITEPDTFMYNTIIRGSAQS 83
V I+G S L E+ +++ G + + K+F ++ + +NT+I Q+
Sbjct: 657 VCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQN 716
Query: 84 QNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVR 143
+ + + +KP++ TF VL+ C + + +HG I+ GF N +
Sbjct: 717 GLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCIT 776
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----V 199
+L+ +A G L +S +F D +AW+++ A YA G A F+ M
Sbjct: 777 TALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLS 836
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS-----WNAMISGYVLCGMNKQALE 254
D V++ ++ + G +E+ F + KR + ++ M+ G+ + A
Sbjct: 837 PDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYG 896
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
+ +EM P +LL AC D ++G K L ++
Sbjct: 897 LIKEMPM---EPSSGVWGALLGACRVYKDTQLGTKAAKRLFEL 936
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 177/536 (33%), Positives = 270/536 (50%), Gaps = 82/536 (15%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
L QI A + + G + +L+ S + G ++ A K+F K +PD F++N I+R
Sbjct: 91 LNQIYAKLLVTGLQYGGFLIAKLVNKASNI--GEVSCARKLFDKFPDPDVFLWNAIVRCY 148
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
++ A+ +Y +M+ + P+ F+F VLKAC+ L MG VHG+I ++GFE +
Sbjct: 149 SRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDV 208
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM--- 197
FV+N L+ +A CG++ A+ +F +V+W+S+ +GYA+ G+ A +F EM
Sbjct: 209 FVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKT 268
Query: 198 -----------------PVRDL----------------VSWNVMITG---YAKQGEMEKA 221
V DL ++++I+ YAK G + A
Sbjct: 269 NVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVA 328
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
FN+V ++ WNAMISGYV G ++A+E+F M+S RPD +T+ S + ACA +
Sbjct: 329 RLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQI 388
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
G LE+ + + + M+ V+ +LID YAKCGS++ A VF + D+DV WS +
Sbjct: 389 GSLELARWMD-EYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAM 447
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
+ G HG ESI +F M++ V P ++TFVG+L AC ++G VEEG F MRD Y
Sbjct: 448 MVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YG 506
Query: 402 IEPNIRHYG---------------------------------------VHGDVELGRLAN 422
IEP +HY +H V LG A
Sbjct: 507 IEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAA 566
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+RL ++ +G YV LSN+YAS W+ V KVR LM + + K G S+IE + K
Sbjct: 567 ERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGK 622
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 168/507 (33%), Positives = 271/507 (53%), Gaps = 75/507 (14%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSAL-RELIYSGSVVIPGAINYAHKMFVKITE 67
S L K CT ++ LK+I + + G D++A R L + S G INYA+ +FV+I
Sbjct: 26 SMLDKNCTTMKDLKKIHSQLIKTGLAKDTNAASRILAFCASPA--GDINYAYLVFVQIQN 83
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFC 126
P+ F +NTIIRG ++S P +++ LY M S ++P + T+ V KA +L + G
Sbjct: 84 PNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQ 143
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+HGK++K G E + F+RN++++ + NCG
Sbjct: 144 LHGKMIKLGLENDSFIRNTILFMYVNCG-------------------------------F 172
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
S AR +FD D+V+WN MI G AK G ++++ LF+++ R+ VSWN+MISGYV
Sbjct: 173 TSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRN 232
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
G ALE+F++M+ P + TM+SLL ACA LG + G+ +H ++ + ++
Sbjct: 233 GRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIV- 291
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
A+IDMY+KCGSI++A++VF R +S W+++I GLA +G E++ +F +Q +
Sbjct: 292 VTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDL 351
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------- 411
RP +++F+ VL AC H G V++ K YF LMRD+Y I+P I+H+
Sbjct: 352 RPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAE 411
Query: 412 ------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
+G++++ + A L+ + ES +VL++N YA+
Sbjct: 412 ELIRSMHVDPDAIIWGSLLWSCCKYGNIKMAKRAANHLIELNPSESSSFVLVANAYAAAN 471
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ K R + ++ I K+PGCS IE
Sbjct: 472 NFEEALKERLTLKENHIGKEPGCSCIE 498
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 174/550 (31%), Positives = 265/550 (48%), Gaps = 98/550 (17%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +C ++R LK+++ L+ L +LI G IN A +F +I P
Sbjct: 10 LLARCKSMRELKKLRGLI-----------LSKLIDFCVDSXFGDINNADLVFRQIDAPSV 58
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+++N++IRG + NP ++ LY Q+ + P+ FTF FVLKAC + ++ G C+H
Sbjct: 59 YIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIADQDCGKCIHCC 118
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
IVK GFE + + L++ + +C D+ + +FD +VVAW+ L AGY + A
Sbjct: 119 IVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEA 178
Query: 191 RSLFDEM-----------------------------------------PVRDLVSWNVMI 209
+F +M P + N+++
Sbjct: 179 LKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIIL 238
Query: 210 TG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
YAK G + A +LFN++P+R++VSWN+MI+ Y +K+AL++F +M + G
Sbjct: 239 ATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGI 298
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
PD T LS+L+ CA L L +G+ VH L G L AL+DMYAK G + A
Sbjct: 299 YPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISL-ATALLDMYAKTGGLGSAQ 357
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR-LKVRPTEITFVGVLVACSHA 383
++F ++ RDV W+++I GLA HG E++ MF+ M + P IT++GVL ACSH
Sbjct: 358 KIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYIGVLFACSHV 417
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G VEE KK+F+LM + Y+I P HYG
Sbjct: 418 GLVEEAKKHFRLMTEMYSIVPGREHYGCMVDLLSRSGHFGEAERLMETMAIQPNISIXGA 477
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
+H ++ + +RL + +SG +VLLSNIYA G W V RK+M I
Sbjct: 478 LLYGCQIHENLXVANQVKERLTELESCQSGAHVLLSNIYAKAGRWEDVNGTRKVMKHKRI 537
Query: 465 KKQPGCSLIE 474
K G S +E
Sbjct: 538 TKIIGHSSVE 547
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 174/526 (33%), Positives = 268/526 (50%), Gaps = 85/526 (16%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQI--QALVTINGFNSDSSAL-RELIYSGSVVIPGAINYAH 59
T R+ SRL ++C NLR LK+ Q L + D L L+Y S G+ +YA
Sbjct: 16 TLRNTLSRLIEQCKNLRELKKTHTQILKSPTLHTGDQYYLITRLLYVCSFSYYGSFSYAT 75
Query: 60 KMFVKITEPDTFMYNTIIRG-----SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
+F I PD YN +IR S + A+ LY QM I PN TF F+LK
Sbjct: 76 NVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLTFPFLLKG 135
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
CT+ L G +H +++K+GF + +V NSLI
Sbjct: 136 CTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISL------------------------- 170
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
Y G LS AR +FDEM V D+V+WN M+ G + G ++ A +LF ++ R+++
Sbjct: 171 ------YMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNII 224
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGE---RPDDVTMLSLLTACADLGDLEVGKKVH 291
+WN++I+G G K++LE+F EM+ + + +PD +T+ S+L+ACA LG ++ GK VH
Sbjct: 225 TWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVH 284
Query: 292 CTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
L +G+ V+ G AL++MY KCG +++A E+F M ++D S W+ +I A HG
Sbjct: 285 GYL--RRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGL 342
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
++ F EM++ V+P +TFVG+L AC+H+G VE+G+ F +M+ Y+IEP + HY
Sbjct: 343 GWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYA 402
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
+HG+VELG L+++
Sbjct: 403 CMVDILSRARLFDESEILIRSMPMKPDVYVWGALLGGCQMHGNVELGEKVVHHLIDLEPH 462
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI-KKQPGCSLIEAD 476
YV +IYA G ++ +++R +M + I KK PGCS+IE +
Sbjct: 463 NHAFYVNWCDIYAKAGMFDAAKRIRNIMKEKRIEKKIPGCSMIEIN 508
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 164/520 (31%), Positives = 267/520 (51%), Gaps = 59/520 (11%)
Query: 8 SSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG-AINYAHKMFVKIT 66
+SRL + + Q+ A++ +G + LR L+ S + P A A + +
Sbjct: 18 ASRLLPRRGSAAAGHQLHAVLFKHGLLHHPAFLRALL---SRLPPSSASTLALLLSAAPS 74
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL------- 119
+Y+ I A S P ++ ++ ++ + S+ F +LK+C R
Sbjct: 75 ALSPPLYSPAISALASSPCPAASLAVFNRVSRLSLPTPLPAFPALLKSCARAFGLCAAAD 134
Query: 120 -----YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
+ + G +HG+++K G +R+V+N+L+ + G L A +FDG + V+W
Sbjct: 135 GGGEGFVSKGMELHGRVLKLGCGGDRYVQNALVSMYGKLGRLGDARKVFDGMPARNAVSW 194
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
++L A + G+L L EMP R + WN IT +A+ G+ME A +F E+P RD V
Sbjct: 195 NALVAAHGATGDLHGVELLSREMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAV 254
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
SWN++I GY G QALE+F EM+ G P ++T++S+L ACA++G+LE+GK VH
Sbjct: 255 SWNSLIGGYTKLGRYVQALEVFREMQDSGVEPTELTLVSVLGACAEIGELELGKGVH-GY 313
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
+ VA GNAL+DMYAKCGS+E A ++F M RD++ W+ +I G + HG++ ++
Sbjct: 314 IGSKGVVADGYVGNALVDMYAKCGSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKA 373
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
+ +F M +V P +TF+GVL+ACSH G V+EG+ YF+ M ++Y I P ++HYG
Sbjct: 374 LELFDAM---RVEPDHVTFLGVLIACSHGGLVDEGRVYFRSMTEDYKIVPGVKHYGCMVD 430
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
VHG ++L A L + + GD
Sbjct: 431 MLCRCGKVAEAYQMINHMPVKANCVLWKMVLAACRVHGHIDLANKAFHELHQLMPIDDGD 490
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
+ +SN+YA W+ VE +R + + + K S ++A
Sbjct: 491 VITVSNVYAEAKRWDVVEHLRTKVIEPGVWKHAAHSQVDA 530
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 169/497 (34%), Positives = 259/497 (52%), Gaps = 77/497 (15%)
Query: 56 NYAHKMFVKITEPDT---FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
++A +F + E + F +NT++R A + +P ++ +++M + ++ P+ +TF VL
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAA-SPRRSLLYFSRMRRAAVAPDAYTFPAVL 123
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC +G VHG+ V+ G + + F RN+LI F+ GD + +FD + D+V
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVR-DLV 182
Query: 173 AWSSLTAGYARRGELSMA--------------------------------RSLFDEMPVR 200
+W+S+ AGY GE+ +A R LFD+MP R
Sbjct: 183 SWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDR 242
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
DLV WN MI GYA+ G M++A LF E+P+R+V+SW+ +I GYV G +ALE F+ M
Sbjct: 243 DLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRML 302
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
G +PD V + + ACA LG LE G+ +H + L+ + V+ ALIDMY KCG +
Sbjct: 303 RCGIKPDRVAAVGAVAACAQLGALEQGRWLH-SYLEKKKVLFDVVVQTALIDMYVKCGRL 361
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ A +F M + V TW+ +I GL HG+ ++I +F +M+ + +++ + VL +C
Sbjct: 362 DLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSC 421
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------------------------- 411
+HAG V EG F M + +EP + HYG
Sbjct: 422 THAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPEL 481
Query: 412 ----------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
H VEL L+ +RL ++ D+SG YVLLSNIYA G W+ V ++RKLM
Sbjct: 482 WGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSA 541
Query: 462 SDIKKQPGCSLIEADDK 478
+KK G S+IE D +
Sbjct: 542 EGMKKNIGRSVIEVDGQ 558
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/484 (33%), Positives = 252/484 (52%), Gaps = 75/484 (15%)
Query: 36 DSSALRELIYSGSVVI----PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF 91
D R ++ S S+++ G + A K+F ++ E D ++ +I G Q+ +A+
Sbjct: 231 DQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALV 290
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151
++ +M ++ ++ VL AC L G +HG +++ G E ++N+LI+ ++
Sbjct: 291 MFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYS 350
Query: 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG 211
G++ A LF+G + D +SWN MI+G
Sbjct: 351 GSGEIMDAQKLFNGSHNL-------------------------------DQISWNSMISG 379
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
K G +EKA LF+ +P++D+VSW+A+ISGY + L +F EM+ RPD+ +
Sbjct: 380 CMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETIL 439
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
+S+++AC L L+ GK VH + V +L G L+DMY KCG +E A+EVF GM
Sbjct: 440 VSVISACTHLAALDQGKWVHAYIRKNGLKVNVIL-GTTLLDMYMKCGCVENALEVFNGME 498
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
++ VS+W+ LI GLA +G E S+ MF EM+ V P EITF+GVL AC H G V+EG+
Sbjct: 499 EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRC 558
Query: 392 YFKLMRDEYNIEPNIRHYGV---------------------------------------H 412
+F M +++ IEPN++HYG H
Sbjct: 559 HFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKH 618
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
GD E+G ++L+ ++ D G +VLLSNI+AS+G+W V +VR +M + K PGCSL
Sbjct: 619 GDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSL 678
Query: 473 IEAD 476
IEA+
Sbjct: 679 IEAN 682
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 241/414 (58%), Gaps = 32/414 (7%)
Query: 15 CTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
C NL+ +I + + + GF SD+ +A R L +S G ++Y+ ++F +I + FM+
Sbjct: 51 CHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIG-LDYSLQIFDRIENSNGFMW 109
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
NT++R QS + A+ LY M K ++ P+ +T+ V++AC L G +H ++K
Sbjct: 110 NTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLK 169
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF+ + +V+N+LI +A CG++ A LFD +D V+W+S+ AGY ++G++ A+ +
Sbjct: 170 VGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLI 229
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FD+MP R++V+ N MI K G++ +A +LFNE+ ++D+VSW+A+ISGY GM ++AL
Sbjct: 230 FDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEAL 289
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC---------------TLLDMT 298
MF EM + G R D+V ++S+L+ACA L ++ GK +H L+ M
Sbjct: 290 VMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMY 349
Query: 299 SGVAKVLHG---------------NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIG 343
SG +++ N++I KCGS+E+A +F M ++D+ +WS +I
Sbjct: 350 SGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVIS 409
Query: 344 GLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
G A H E++A+F EMQ ++RP E V V+ AC+H +++GK +R
Sbjct: 410 GYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIR 463
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 88/178 (49%), Gaps = 7/178 (3%)
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
++F+ + + WN M+ Y+ ++AL +++ M PD+ T ++ ACA +
Sbjct: 96 QIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VR 154
Query: 283 DLEVG-KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
LE G K++H +L + + V N LI+MYA CG++ A ++F D +W+++
Sbjct: 155 LLEFGGKEIHDHVLKVGFD-SDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSI 213
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+ G G EE+ +F +M + + + ++V G+V E K F M ++
Sbjct: 214 LAGYVKKGDVEEAKLIFDQMPQRNIVASN----SMIVLLGKMGQVMEAWKLFNEMDEK 267
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 167/518 (32%), Positives = 258/518 (49%), Gaps = 80/518 (15%)
Query: 10 RLWKKCTNLRTLKQIQALVTIN---GFNSDSSALRELIYS-----GSVVIPGAINYAHKM 61
+L K+C + L Q+ A N F+S S L + +Y+ S ++YA +
Sbjct: 21 KLIKQCKTISQLHQLHAYTITNTPLSFHSSPSLLTKFLYTLTTKAKSKSSTSLLHYAKSI 80
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
F I P TF YNTIIR P+ A+ +TQM + S+ + +F F LKAC +L
Sbjct: 81 FNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQLGGV 140
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
C+H +++K+GF + +V NSLI+ GY
Sbjct: 141 FSARCLHCQVLKFGFLSDLYVMNSLIH-------------------------------GY 169
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
+ A +FDE P RD+VS+NV+I G+ K G++ KA ELF+ +P RD VSWN +I+
Sbjct: 170 MVSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIA 229
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
G ++A+E+F+ M + RPD+V ++S L+ACA LG+LE GKK+H ++ +
Sbjct: 230 GCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQLGELEKGKKIH-DYIERNAMK 288
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
L+D YAKCG ++ A+++F D+++ TW+ ++ GLA HG+ E + F M
Sbjct: 289 VDTFLSTGLVDFYAKCGCVDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRM 348
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
V+P I+ +GVLV CSH+G V+E +K F M Y + +HYG
Sbjct: 349 IEAGVKPDGISILGVLVGCSHSGLVDEARKLFDEMESVYGVPREPKHYGCMADLLGRAGL 408
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+HGDVE+ A K L+ ++ D+ G Y +L+N+
Sbjct: 409 IKKVMEMIKDMPRGGDMSVWSGLLGGCRIHGDVEIAEKAAKHLMELKPDDGGVYSILANV 468
Query: 443 YASRGEWNRVEKVRK-LMDDSDIKKQPGCSLIEADDKA 479
YA+ W V +R+ L + + K G SLI+ D A
Sbjct: 469 YANAERWEDVMNIRRSLSSNRVVTKIAGFSLIQLDGVA 506
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/539 (29%), Positives = 271/539 (50%), Gaps = 74/539 (13%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+R +H + L + ++QI A + ++G D + + + ++ ++YA++
Sbjct: 2 SRIGKHPAIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQ 61
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS--IKPNKFTFSFVLKACTRL 118
+ + +P F N++IR +S P + Y ++ +KP+ +T +F+++ACT L
Sbjct: 62 ILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGL 121
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
R G VHG ++ GF+ + V+ LI
Sbjct: 122 RMRETGLQVHGMTIRRGFDNDPHVQTGLISL----------------------------- 152
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
YA G L +F+ +P D V M+T A+ G++ A +LF +P+RD ++WNA
Sbjct: 153 --YAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNA 210
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MISGY G +++AL +F M+ G + + V M+S+L+AC LG L+ G+ H + ++
Sbjct: 211 MISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAH-SYIERN 269
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
V L+D+YAKCG +E+A+EVF GM +++V TWS+ + GLA +GF E+ + +F
Sbjct: 270 KIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELF 329
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
M++ V P +TFV VL CS G V+EG+++F MR+E+ IEP + HYG
Sbjct: 330 SLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYAR 389
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
++ ++ELG LA+K++L + G YVLL
Sbjct: 390 AGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLL 449
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLDT 498
SNIYA +W+ V VR+ M ++KQPGCS++E + + ++ K P +D
Sbjct: 450 SNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVH-EFFVGDKSHPKYTQIDA 507
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/497 (34%), Positives = 259/497 (52%), Gaps = 77/497 (15%)
Query: 56 NYAHKMFVKITEPDT---FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
++A +F + E + F +NT++R A + +P ++ +++M + ++ P+ +TF VL
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAA-SPRRSLLYFSRMRRAAVAPDAYTFPAVL 123
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC +G VHG+ V+ G + + F RN+LI F+ GD + +FD + D+V
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVR-DLV 182
Query: 173 AWSSLTAGYARRGELSMA--------------------------------RSLFDEMPVR 200
+W+S+ AGY GE+ +A R LFD+MP R
Sbjct: 183 SWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDR 242
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
DLV WN MI GYA+ G M++A LF E+P+R+V+SW+ +I GYV G +ALE F+ M
Sbjct: 243 DLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRML 302
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
G +PD V + + ACA LG LE G+ +H + L+ + V+ ALIDMY KCG +
Sbjct: 303 RCGIKPDRVAAVGAVAACAQLGALEQGRWLH-SYLEKKKVLFDVVVQTALIDMYVKCGRL 361
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ A +F M + V TW+ +I GL HG+ ++I +F +M+ + +++ + VL +C
Sbjct: 362 DLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSC 421
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------------------------- 411
+HAG V EG F M + +EP + HYG
Sbjct: 422 THAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPEL 481
Query: 412 ----------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
H VEL L+ +RL ++ D+SG YVLLSNIYA G W+ V ++RKLM
Sbjct: 482 WGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSA 541
Query: 462 SDIKKQPGCSLIEADDK 478
+KK G S+IE D +
Sbjct: 542 EGMKKNIGRSVIEVDGQ 558
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 183/591 (30%), Positives = 284/591 (48%), Gaps = 117/591 (19%)
Query: 2 RTNRHRSS--RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSG-SVVIPGAINYA 58
R H S +L ++C +++ L Q+ A + ++G S +S L Y + G + +A
Sbjct: 6 RAGHHLPSLQKLLRQCRSIQRLNQLHAHLLVHGSLSAASDLLLASYCALAKAGHGVLCHA 65
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
++F I PD MYNTIIR S P +A+ L+ M + I PN+FT FV+KACT
Sbjct: 66 RRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIA 125
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
R VHG ++ G FV N+L++ +A+ G L + FD +VV+W+S+
Sbjct: 126 QAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMI 185
Query: 179 AGYARRGELSMARSLFDEM-------------------------PVRDLVSWNVMITG-- 211
GYA+ G+ SLF EM + LV ++++G
Sbjct: 186 GGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSR 245
Query: 212 ------------YAKQGEMEKANELF-------------------------------NEV 228
Y K G++ A F + +
Sbjct: 246 VDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHM 305
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
P+R++VSWNAMIS YV G +AL+++ +M+S G PD++T++++L+A +GDL VGK
Sbjct: 306 PERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGK 365
Query: 289 KVHCTLLD--MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
VH + D V+ V N+L+DMYAKCG ++ AI +F M +R+V +W+ +IGGLA
Sbjct: 366 MVHLYIRDNIYNPDVSLV---NSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLA 422
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HG A ++I FR M P ITFV +L ACSH G +E G+ YF+ MR YN++ +
Sbjct: 423 MHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEV 482
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HY +HG+V++GR K+LL
Sbjct: 483 EHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLE 542
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ G +VL+SN+ +W ++++RKLM + +K G S IE ++
Sbjct: 543 LEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINNS 593
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/530 (29%), Positives = 263/530 (49%), Gaps = 84/530 (15%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGF----NSDSSALRELIYSGSVVIP------- 52
N + + ++C +L+ L Q+ A G + S L ++ + + ++P
Sbjct: 14 NTSEAITVIRQCKSLKQLHQVHAHTITTGLLWGLHHSSLLLTNILTAFTALLPTTNASPT 73
Query: 53 ---GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFS 109
YA +F +I P TF YNT+IR +PL A+ ++ +M + S+ P+ TF
Sbjct: 74 TPAALTGYALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFP 133
Query: 110 FVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
F LKAC+ L ++ +H + K+GF + FV N+LI+ ++ L+ A +F+ +
Sbjct: 134 FCLKACSLLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLK 193
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
DVV++++L G+ + G+ AR LFD+MP+RD VSW ++ GYA+ G+
Sbjct: 194 DVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGD------------ 241
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
LC A+++F M RPD++ ++S L+ACA LG+LE GK
Sbjct: 242 ---------------LC---MDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKS 283
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
+H + + L L+D+YAKCG IE A E+F D+++ TW+ L+ GL HG
Sbjct: 284 IHVYIKQNRIPINAFL-STGLVDLYAKCGCIETAREIFESSPDKNLFTWNALLVGLGMHG 342
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
S+ F M ++P ++F+G+LV C HAG V E + +F+ M Y + ++HY
Sbjct: 343 RGHLSLHYFSRMIEAGIKPDGVSFLGILVGCGHAGLVCEARNFFQEMEVVYRVPRELKHY 402
Query: 410 G---------------------------------------VHGDVELGRLANKRLLNMRK 430
G +HG+VE+ A + ++ +
Sbjct: 403 GCMADLLGRAGLIREAMEMIERMPMGGDVFVWGGVLGGCRIHGNVEIAEKAAENVMALNP 462
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
++ G Y ++++IYA+ G W V ++R+LM +KK PGCSL++ ++ F
Sbjct: 463 EDDGVYSIMADIYANAGRWEDVARIRRLMHSRQVKKNPGCSLVQLNNGVF 512
>gi|449516776|ref|XP_004165422.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 427
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/426 (37%), Positives = 237/426 (55%), Gaps = 49/426 (11%)
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151
LY +M+K I ++FTFS VL A R+ +G VH ++++ GF N+ V SL+ +A
Sbjct: 3 LYARMQKAGILESEFTFSSVLSASARMPALYLGRQVHARVIQLGFLSNKIVLTSLMDMYA 62
Query: 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG 211
CG + A LF D+VAW+S+ GY++ G + A+ LFD+M R+ SW M+ G
Sbjct: 63 KCGFILDAESLFFAIDDKDIVAWTSMIRGYSKLGMMDDAQDLFDKMGQRNSFSWTTMVAG 122
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD--- 268
YA G M+ A +L++ +P+++ VS AMI+GY CG +A +F E+ PD
Sbjct: 123 YANWGNMKAAKQLYDAMPEKNPVSQLAMIAGYGRCGDVAEAERIFGEILV----PDSSCC 178
Query: 269 ---VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
V ++ L+AC LGD+E+ K+ +D + NALI ++K G+IERA E
Sbjct: 179 AAMVALVGALSACVQLGDVEMASKL-IDQVDEGCCDRTLFVSNALIHKHSKFGNIERAQE 237
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
F M+DRDV T+STLI LA HG A+E++ +F +M+ ++P +I F+GVL AC+HAG
Sbjct: 238 EFNRMKDRDVVTYSTLIIALADHGKAKEALDLFSKMEEEGIKPNQICFIGVLNACAHAGL 297
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYG----------------------------------- 410
+E+G KYF+LMR + IEP HY
Sbjct: 298 IEQGCKYFELMRKGFGIEPQKGHYACMVDLLGRAGEVEMAYNVIKGAREIDAKTWGSLLG 357
Query: 411 ---VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
+HG++E+G +A K L M + +G+YVLL+N YA EWN EKVR +M + IKK
Sbjct: 358 ACKIHGNLEVGEIAAKHLFEMEPENTGNYVLLANTYAQMKEWNEAEKVRNVMVERGIKKF 417
Query: 468 PGCSLI 473
PG S +
Sbjct: 418 PGYSWV 423
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 8/187 (4%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A + F ++ + D Y+T+I A +A+ L+++ME+ IKPN+ F VL
Sbjct: 230 GNIERAQEEFNRMKDRDVVTYSTLIIALADHGKAKEALDLFSKMEEEGIKPNQICFIGVL 289
Query: 113 KACTRLLYRNMGFCVHGKIVKYGF--EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
AC G C + ++++ GF E + ++ G++ A + G ++D
Sbjct: 290 NACAHAGLIEQG-CKYFELMRKGFGIEPQKGHYACMVDLLGRAGEVEMAYNVIKGAREID 348
Query: 171 VVAWSSLTAGYARRGELSM----ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
W SL G L + A+ LF EM + ++ ++ YA+ E +A ++ N
Sbjct: 349 AKTWGSLLGACKIHGNLEVGEIAAKHLF-EMEPENTGNYVLLANTYAQMKEWNEAEKVRN 407
Query: 227 EVPKRDV 233
+ +R +
Sbjct: 408 VMVERGI 414
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/556 (29%), Positives = 274/556 (49%), Gaps = 111/556 (19%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+ +K++ A + ++G ++ A+ ++I ++ ++ AHK+F +I P TF++NT++
Sbjct: 854 MEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVS-AHKVFKQIESPTTFLWNTLL 912
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
RG AQS P DA+ Y + ++ +KP+ TF FVLKAC + G +H ++K GF
Sbjct: 913 RGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFL 972
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ FV NSLIY +A CG L A +F+ DVV+W+SL GY++ L +LF M
Sbjct: 973 LDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLM 1032
Query: 198 PVRD-----------------LVSW----------------------NVMITGYAKQGEM 218
+ L W N +I Y + G++
Sbjct: 1033 QAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQL 1092
Query: 219 EKA-------------------------------NELFNEVPKRDVVSWNAMISGYVLCG 247
+ A ++F+++P +D++SW++MI Y
Sbjct: 1093 QSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQAS 1152
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+LE+F +M+ +PD V + S+L+ACA LG L++GK +H + + A +
Sbjct: 1153 HFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIH-DYVRRNNIKADTIME 1211
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
N+LIDM+AKCG ++ A++VF M ++D +W+++I GLA +GF +E++ +F M R
Sbjct: 1212 NSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPR 1271
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P E+TF+GVL+AC++ VEEG +F+ M+ +N+EP ++HYG
Sbjct: 1272 PNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVS 1331
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
HG+V + +A K+L + S D +LLSNIYAS
Sbjct: 1332 FISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELDPGNSADSMLLSNIYASADR 1391
Query: 449 WNRVEKVRKLMDDSDI 464
W+ VR+ D+ +
Sbjct: 1392 WSDAMNVRRWTADNAV 1407
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 151/479 (31%), Positives = 249/479 (51%), Gaps = 86/479 (17%)
Query: 37 SSALRE--LIYSGSVVIPGAINYA---HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF 91
SS LR L YS + +P + + +K+ + + ++ + PL+A+
Sbjct: 407 SSGLRHQALSYSSTAPVPATARSSTPPSRTALKVFDQSPAPWRAFLKAYSHGPFPLEALH 466
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI--YF 149
L+ + + + F F+FVLKAC L + G +H +V+ GFEF+ +V +LI Y
Sbjct: 467 LFKHARQ-HLADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYV 525
Query: 150 HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMI 209
+ C L AR +FDEMPV+++VSWNVMI
Sbjct: 526 MSRC---------------------------------LVEARKVFDEMPVKNVVSWNVMI 552
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
TG+A GE+E A LF+++P R+VVSW +I GY + +AL + M + G P ++
Sbjct: 553 TGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEI 612
Query: 270 TMLSLLTACADLGDLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
T+L+++ A ++LG + +G+ + +C + S A+V GN+LID+YAK GS++ +++VF
Sbjct: 613 TVLAVIPAISNLGGILMGEMLNGYCEKKGIMSD-ARV--GNSLIDLYAKIGSVQNSLKVF 669
Query: 328 LGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
M D R++ +W+++I G A HG + E++ +F EM+R ++P ITF+ V+ ACSH G V
Sbjct: 670 DEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLV 729
Query: 387 EEGKKYFKLMRDEYNIEPNIRHYGV----------------------------------- 411
E+G +FK M EYNI+P I+H+G
Sbjct: 730 EQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLG 789
Query: 412 ----HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
+G+V +G A K + ++ ++ GD+ +LSN+ G ++ E+ RKL+D I K
Sbjct: 790 CCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVK 848
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/405 (21%), Positives = 163/405 (40%), Gaps = 68/405 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + YA +F ++ + + +I G ++ +A+ L M I P++ T V+
Sbjct: 559 GEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVI 618
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-KMDV 171
A + L MG ++G K G + V NSLI +A G + + +FD + ++
Sbjct: 619 PAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNL 678
Query: 172 VAWSSLTAGYARRGELSMARSLFDEM------PVR------------------------- 200
V+W+S+ +G+A G A LF EM P R
Sbjct: 679 VSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKS 738
Query: 201 ---------DLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMI---SGYVLCG 247
++ + +I + G + +A ++ +P + +V W ++ S Y
Sbjct: 739 MVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVA 798
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLS-LLTACADLGDLEVGKKVH-----CTLLDMTSGV 301
M ++A++M ++ E D +LS +LT D E +K+ L +
Sbjct: 799 MGERAIKMISDLER--ESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKLQEAVMEA 856
Query: 302 AKVLHGNALIDMYAKC---------------GSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
K LH + ++ C + A +VF + W+TL+ GLA
Sbjct: 857 VKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLA 916
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+++I +++ Q ++P +TF VL AC+ +EG++
Sbjct: 917 QSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQ 961
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 177/568 (31%), Positives = 283/568 (49%), Gaps = 86/568 (15%)
Query: 11 LWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
L ++C LR+L+Q + A + +G + L+ + G++ A ++F I +
Sbjct: 53 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKC--GSLTDARRVFDSIRD 110
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
+ + +I L+A Y M+ KP+K TF +L A T +G V
Sbjct: 111 RNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKV 170
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H +IV+ G E V SL+ +A CGD++ A V+FD + +VV W+ L AGYA++G++
Sbjct: 171 HMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQV 230
Query: 188 SMARSLFDEM---------------------PV------------------RDLVSWNVM 208
+A L + M P R+L N +
Sbjct: 231 DVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSL 290
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
IT Y K G +E+A +LF+++P RDVV+W AM++GY G + +A+ +F M+ G +PD
Sbjct: 291 ITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDK 350
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
+T S+LT+C+ L+ GK++H L+ + L +AL+ MYAKCGS++ A VF
Sbjct: 351 MTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ-SALVSMYAKCGSMDDASLVFN 409
Query: 329 GMRDRDVSTWSTLIGG-LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
M +R+V W+ +I G A HG E++ F +M++ ++P ++TF VL AC+H G VE
Sbjct: 410 QMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVE 469
Query: 388 EGKKYFKLMRDEYNIEPNIRHYG------------------------------------- 410
EG+K+F+ M +Y I+P + HY
Sbjct: 470 EGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSA 529
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
VH DVE G A + +L + D+ G YV LS+IYA+ G + EKVR++M+ D+ K+P
Sbjct: 530 CRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEP 589
Query: 469 GCSLIEADDKAFLQYLFNLKPKPNSGNL 496
G S IE D K + ++ + K P S +
Sbjct: 590 GQSWIEVDGKVHVFHVED-KSHPESEQI 616
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 171/338 (50%), Gaps = 43/338 (12%)
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
F +L+ C RL G VH I+K G + NR++ N+L+ +A CG L A +FD
Sbjct: 49 VFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSI 108
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITG----------- 211
++V+W+++ + + A ++ M + D V++ ++
Sbjct: 109 RDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQ 168
Query: 212 ------------------------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
YAK G++ KA +F+ +P+++VV+W +I+GY G
Sbjct: 169 KVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQG 228
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH- 306
ALE+ E M+ P+ +T S+L C LE GKKVH ++ SG + L
Sbjct: 229 QVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQ--SGYGRELWV 286
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
N+LI MY KCG +E A ++F + RDV TW+ ++ G A GF +E+I +FR MQ+ +
Sbjct: 287 VNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI 346
Query: 367 RPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIE 403
+P ++TF VL +CS ++EGK+ + +L+ YN++
Sbjct: 347 KPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLD 384
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 6/226 (2%)
Query: 244 VLC--GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
VLC G K+AL + M G R LL CA L LE G++VH +L
Sbjct: 21 VLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQP 80
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ L N L+ MYAKCGS+ A VF +RDR++ +W+ +I E+ + M
Sbjct: 81 NRYLE-NTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETM 139
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIEPNIRHYGVHGDVELGRL 420
+ +P ++TFV +L A ++ ++ G+K + +++ +EP + V + G +
Sbjct: 140 KLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDI 199
Query: 421 ANKRLLNMRKDESG--DYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
+ R++ R E + LL YA +G+ + ++ + M +++
Sbjct: 200 SKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEV 245
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 160/509 (31%), Positives = 265/509 (52%), Gaps = 73/509 (14%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S L +C ++ L +I L+ G + + + + + ++ G ++YA+K K+++P
Sbjct: 12 SILRHQCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDP 71
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ +N +IRG + S+NP ++ +Y QM + + P+ T+ F++K+ +RL R +G +H
Sbjct: 72 PNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLH 131
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+VK G E++ F+ N+LI+ + + D +A LFD ++V W+S+ YA+ G++
Sbjct: 132 CSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVV 191
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
AR +FDEM RD+V+W+ MI GY K+GE KA E+F+++
Sbjct: 192 SARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQM-------------------- 231
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
MR + ++VTM+S++ ACA LG L GK VH +LD+ + +L
Sbjct: 232 ----------MRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQ-T 280
Query: 309 ALIDMYAKCGSIERAIEVFL--GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
+LIDMYAKCGSI A VF +++ D W+ +IGGLA HGF ES+ +F +M+ K+
Sbjct: 281 SLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKI 340
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------- 411
P EITF+ +L ACSH G V+E +FK ++ E EP HY
Sbjct: 341 DPDEITFLCLLAACSHGGLVKEAWHFFKSLK-ESGAEPKSEHYACMVDVLSRAGLVKDAH 399
Query: 412 ------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
HG++EL K+L+ ++ G YV L+N+YA
Sbjct: 400 DFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINK 459
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
++ +R+ M+ +KK G S+++ D
Sbjct: 460 QFRAARSMREAMEKKGVKKIAGHSILDLD 488
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 169/523 (32%), Positives = 267/523 (51%), Gaps = 83/523 (15%)
Query: 11 LWKKCTNLRTLKQIQA-LVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
L ++C +L LKQ+QA L+T+ + A + L + + ++YA +F + P+
Sbjct: 61 LLERCIHLNHLKQLQAFLITLGHAQTHFYAFKLLRFC--TLALSNLSYARFIFDHVESPN 118
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
++Y +I A + A+ LY M + PN F + VLK+CT+++ VH
Sbjct: 119 VYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMVH 178
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
++++ GFE V+ +L+ DA + WS + +
Sbjct: 179 CQVLRSGFEQYPVVQTALL------------------DAYLRF--WSDVES--------- 209
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
AR LFDEM R++VSW MI+GY + G++ A LF E+P+RDV SWNA+I+GY G+
Sbjct: 210 -ARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGL 268
Query: 249 NKQALEMFEEMRSV-------GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
+AL +F M +V G RP+ VT + L+AC G L +GK +H + G+
Sbjct: 269 FMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGL 328
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ NAL+DMY KCG ++ A VF +R +++W+++I LA HG ++ +I++F EM
Sbjct: 329 DSFV-SNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEM 387
Query: 362 QRL--KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
V+P E+TF+G+L AC+H G VE+G YF+LM Y IEP I HYG
Sbjct: 388 MTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRA 447
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
+HG +L + K+L++M + G ++L+
Sbjct: 448 GQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLA 507
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQY 483
NIY G+W+ V KVRK++ + + K PGCS IE D++ Y
Sbjct: 508 NIYGELGKWDEVRKVRKVLKEQNAHKTPGCSWIEIDNQVHQFY 550
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 165/511 (32%), Positives = 261/511 (51%), Gaps = 86/511 (16%)
Query: 12 WKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVKITEPDT 70
++KC ++ L+Q + + G +S + + LI + A+ YA K+F I +PD
Sbjct: 29 FEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDA 88
Query: 71 FMYNTIIRGSAQSQN-PLDAVFL-YTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
F+YNTII+G SQ P +++ L Y+ M + S+ PN FTF +L AC ++ + G +H
Sbjct: 89 FLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQH---GMQIH 145
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+ K+GF + NSLI+ + L A +F D V+W+SL +GY++ G +
Sbjct: 146 AHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLID 205
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
A ++F MP ++ SWN M+ Y + +A LF+ +
Sbjct: 206 EAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAE----------------- 248
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKV 304
N L+ F ++L+AC LG L+ GK +H + +++ S +
Sbjct: 249 NNNVLDKF-------------VATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLT-- 293
Query: 305 LHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
A++DMY KCG +E+A++VF L + R +S+W+ +IGGLA HG E +I +F+EM+
Sbjct: 294 ---TAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEME 350
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
R +V P +ITF+ +L AC+H+G VEEG+ YF M Y IEP + H+G
Sbjct: 351 RQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMV 410
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H ++ELG +R++ + + SG YVLL+N+Y
Sbjct: 411 PEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLY 470
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
A+ G+W KVRKLMDD +KK PG S+IE
Sbjct: 471 ANAGKWEDAAKVRKLMDDRGVKKAPGFSMIE 501
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 161/467 (34%), Positives = 247/467 (52%), Gaps = 77/467 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I ++ +F + +PD F++ I ++ + A LY Q+ I PN+FTFS +L
Sbjct: 76 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSIL 135
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
K+C+ G +H ++K+G + +V L+ D+
Sbjct: 136 KSCST----KSGKLIHTHVLKFGLGLDPYVATGLV----------------------DI- 168
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
YA+ G++ A+ +FD MP R LVS MIT YAKQG +E A LF+ + +RD
Sbjct: 169 --------YAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERD 220
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVH 291
+VSWN MI GY G AL +F+++ + G+ +PD++T+++ L+AC+ +G LE G+ +H
Sbjct: 221 IVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIH 280
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
++ + V ALIDMY+KCGS+E A+ VF +D+ W+ +I G A HG++
Sbjct: 281 -VFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYS 339
Query: 352 EESIAMFREMQRLK-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
++++ +F EMQ + ++PT+ITF+G L AC+HAG V EG + F+ M EY I+P I HYG
Sbjct: 340 QDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYG 399
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
+HG+ LG+ + L+
Sbjct: 400 CLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNIS 459
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
SG YVLLSNIYA G++ V KVR LM + I K+PG S IE D+K
Sbjct: 460 NSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNK 506
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 35/211 (16%)
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
YA G++ + LF++ D+ + A I+ + G+ QA ++ ++ S P++ T
Sbjct: 71 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFT 130
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGV------------AK--------------- 303
S+L +C+ + GK +H +L G+ AK
Sbjct: 131 FSSILKSCST----KSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMP 186
Query: 304 ---VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
++ A+I YAK G++E A +F M +RD+ +W+ +I G + HGF +++ +F++
Sbjct: 187 ERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQK 246
Query: 361 -MQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ K +P EIT V L ACS G +E G+
Sbjct: 247 LLADGKPKPDEITVVAALSACSQIGALETGR 277
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YA G I ++ +F D D+ ++ I + +G +++ ++ ++ ++ P E TF
Sbjct: 72 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTF 131
Query: 374 VGVLVACS-HAGK-VEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKD 431
+L +CS +GK + F L D Y + Y GDV A K M +
Sbjct: 132 SSILKSCSTKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDV---VSAQKVFDRMPER 188
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+ YA +G VE R L D
Sbjct: 189 SLVSSTAMITCYAKQGN---VEAARALFD 214
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 180/516 (34%), Positives = 263/516 (50%), Gaps = 75/516 (14%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
R+ K L T +I A V F AL + + SGS + AH +F I P
Sbjct: 32 RIENKTIGLGTKTKIGAAVAFLVFGL-VFALGDFLPSGSNSSAHHLLSAHYVFKDIQSPS 90
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
T ++N +IR A+SQ P ++ + QM +P+ T+SF+L ACT L G VH
Sbjct: 91 TILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTSSLSLREGQQVHS 150
Query: 130 KIVKYGF-EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
K++ G+ N F+ + L+ F+A A V +G A L+
Sbjct: 151 KVLTNGYYSSNVFLMSKLVNFYA-------AVVGGEGAA-------------------LA 184
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
AR +FD+M R++V WN M+ GY ++G ++ A +F E+P+R+VVSW MISGY G
Sbjct: 185 SARKVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGK 244
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK---VL 305
KQAL +F++MR G D V +L+ LTACA+LGDL++G +H + D G + V
Sbjct: 245 CKQALNLFDQMRKAGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVS 304
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL- 364
NALI MYA CG I+ A EVF M +R +W++LI A G+A+ + +FR MQRL
Sbjct: 305 LNNALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLG 364
Query: 365 --KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV------- 415
+ RP ITF+GVL ACSHAG V+EG++ FK M + I+P I HYG D+
Sbjct: 365 TSEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRWGIKPRIEHYGCMVDLLSRAGFL 424
Query: 416 --------------------------------ELGRLANKRLL-NMRKDESGDYV-LLSN 441
EL L +++L+ D++ Y+ LL+
Sbjct: 425 DEAQELIATMPVKPNNAVWGALLGGCRFYRNAELASLVSQKLVAEPDPDKAAGYLSLLAQ 484
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+YAS +W V VR+ M +KK G S ++ ++
Sbjct: 485 VYASAEKWQDVATVRQKMVAMGVKKPAGQSWVQINE 520
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 167/455 (36%), Positives = 239/455 (52%), Gaps = 82/455 (18%)
Query: 69 DTFMYNTIIRGSAQS--QNPL--DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
++F++N +IR S +S QNP A+ LY +M ++ P+ TF F+L++ + G
Sbjct: 23 ESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINT---PHRG 79
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H +I+ G + FV+ SLI +++CG T +AR+
Sbjct: 80 RQLHAQILLLGLANDPFVQTSLINMYSSCG-----------------------TPTFARQ 116
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
FDE+ DL SWN +I AK G + A +LF+++P+++V+SW+ MI GYV
Sbjct: 117 A--------FDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYV 168
Query: 245 LCGMNKQALEMFEEMRSV---GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
CG K AL +F ++++ RP++ TM S+L+ACA LG L+ GK VH +D T
Sbjct: 169 SCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVH-AYIDKTGMK 227
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGM-RDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
V+ G +LIDMYAKCGSIERA +F + ++DV WS +I + HG +EE + +F
Sbjct: 228 IDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFAR 287
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M VRP +TFV VL AC H G V EG +YFK M +EY + P I+HYG
Sbjct: 288 MVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAG 347
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
+HGDVE +A +LL + S YVLLSN
Sbjct: 348 RIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSN 407
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+YA G W V +R LM+ IKK PGCSL+E D
Sbjct: 408 VYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVD 442
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 139/369 (37%), Gaps = 104/369 (28%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
+Q+ A + + G +D LI YS G +A + F +IT+PD +N II
Sbjct: 80 RQLHAQILLLGLANDPFVQTSLINMYSSC----GTPTFARQAFDEITQPDLPSWNAIIHA 135
Query: 80 SAQS-----------QNPLDAVFLYTQM-----------------------EKCSIKPNK 105
+A++ Q P V ++ M E ++PN+
Sbjct: 136 NAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNE 195
Query: 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165
FT S VL AC RL G VH I K G + + + SLI +A CG + A +FD
Sbjct: 196 FTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDN 255
Query: 166 -DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANEL 224
+ DV+AWS+ MIT ++ G E+ EL
Sbjct: 256 LGPEKDVMAWSA-------------------------------MITAFSMHGLSEECLEL 284
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F M + G RP+ VT +++L AC G +
Sbjct: 285 F-------------------------------ARMVNDGVRPNAVTFVAVLCACVHGGLV 313
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIG 343
G + +++ + H ++D+Y++ G IE A V M + DV W L+
Sbjct: 314 SEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLN 373
Query: 344 GLAFHGFAE 352
G HG E
Sbjct: 374 GARIHGDVE 382
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 181/585 (30%), Positives = 280/585 (47%), Gaps = 121/585 (20%)
Query: 25 QALVTINGFNSDSSALRELIYSGSVVIP--GAINYAHKMFVKITEPDTFMYNTIIRGSAQ 82
A + G ++ + AL +L+ VV P + YA +F EP+ ++NT++RG A
Sbjct: 2 HAQMVKTGLHNTNYALSKLL-ELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60
Query: 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFV 142
S + + + +Y +M PN +TF F+LK+C + G +H +++K G E +R+
Sbjct: 61 SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120
Query: 143 RNSLIYFHA---------------------NC----------GDLNTASVLFDGDAKMDV 171
SLI +A +C GD+ +A +FD + DV
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180
Query: 172 VAWSSLTAGYARRGELSMARSLFDEM-----------------------------PVRDL 202
V+W+++ GY A LF EM + L
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240
Query: 203 VS-----------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
V N I Y+K G++E A+ LF + +DVVSWN +I GY + K+
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL- 310
AL +F+EM GE P+DVTMLS+L ACA LG +++G+ +H + GV +G+AL
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVT---NGSALR 357
Query: 311 ---IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
IDMYAKCG IE A +VF M + +S+W+ +I G A HG A + +F M++ +
Sbjct: 358 TSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIE 417
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P +IT VG+L ACSH+G ++ G+ FK + +YNI P + HYG
Sbjct: 418 PDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEE 477
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+HG++EL ++L+ + + SG YVLLSNIYA+ G
Sbjct: 478 IIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGR 537
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
W V ++R++++ +KK PGCS IE D +++ K P S
Sbjct: 538 WEDVARIREVLNGKGMKKVPGCSSIEIDSVVH-EFIIGDKLHPQS 581
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/428 (24%), Positives = 177/428 (41%), Gaps = 51/428 (11%)
Query: 22 KQIQALVT-INGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
++I LV +GF S + I G G + A +F ++ D +NT+I G
Sbjct: 235 REIHTLVDDHHGFGSSLKIVNAFI--GLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGY 292
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY--GFEF 138
+A+ L+ +M + PN T VL AC L ++G +H I K G
Sbjct: 293 THMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTN 352
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
+R SLI +A CGD+ A +F+ + +W+++ G+A G + A LF M
Sbjct: 353 GSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMR 412
Query: 199 VRDLVSWNVMITGY----AKQGEMEKANELFNEV-------PKRDVVSWNAMISGYVLCG 247
+ ++ + G + G ++ +F V PK + + MI G
Sbjct: 413 KNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLE--HYGCMIDLLGHAG 470
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM---TSGVAKV 304
+ K+A E+ M PD V SLL AC G+LE+ + L+++ SG + V
Sbjct: 471 LFKEAEEIIHMMPM---EPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSG-SYV 526
Query: 305 LHGNALIDMYAKCG---SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA------EESI 355
L L ++YA G + R EV G + V S++ H F +S
Sbjct: 527 L----LSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSR 582
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV 415
++R ++ + V E AG V + + + M +E+ E +RH+ +
Sbjct: 583 EIYRMLEEMDVLLEE------------AGFVPDTSEVLQEMEEEWK-EGALRHHSEKLAI 629
Query: 416 ELGRLANK 423
G ++ K
Sbjct: 630 AFGLISTK 637
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 158/444 (35%), Positives = 237/444 (53%), Gaps = 75/444 (16%)
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
M+N +I G +S + + M + S T+ VL AC + +G VH ++
Sbjct: 128 MWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRV 187
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
++ G ++ V N+L+ +A CGD++ A VL
Sbjct: 188 LESGVLPDQRVENALVDMYAECGDMDAAWVL----------------------------- 218
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
F+ M +R + SW +I+G + G++++A +LF+ +P+RD ++W AMI GYV G +
Sbjct: 219 --FEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRD 276
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK--KVHCTLLDMTSGVAKVLHGNA 309
ALE F M+ R D+ TM+S++TACA LG LE G+ +++ L + V GNA
Sbjct: 277 ALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIK---MDVFVGNA 333
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
LIDMY+KCGSIERA++VF M +RD TW+ +I GLA +G EE+I MF M R P
Sbjct: 334 LIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPD 393
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
E+TFVGVL AC+HAG V++G+++F M + YNI P + HYG
Sbjct: 394 EVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTI 453
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
V+G+ E+G LA +RLL + D S Y+LLSN+YA W
Sbjct: 454 DKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSNRWK 513
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIE 474
V ++R+++ + IKK+PGCS+IE
Sbjct: 514 DVRRIRQIIMEKGIKKEPGCSMIE 537
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 133/328 (40%), Gaps = 64/328 (19%)
Query: 26 ALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQN 85
A V G S A + SG +V G ++ A +F + E DT + +I G Q
Sbjct: 215 AWVLFEGMQMRSMASWTSVISG-LVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGR 273
Query: 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145
DA+ + M+ C ++ ++FT V+ AC +L G + + G + + FV N+
Sbjct: 274 FRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNA 333
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
LI ++ CG + A +DV F +M RD +W
Sbjct: 334 LIDMYSKCGSIERA---------LDV----------------------FKDMHNRDKFTW 362
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
+I G A G E+A ++MF M +
Sbjct: 363 TAIILGLAVNGRGEEA-------------------------------IDMFYRMLRALQT 391
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD+VT + +LTAC G ++ G++ ++ + + V+H LID+ + G ++ A++
Sbjct: 392 PDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALD 451
Query: 326 VFLGMRDRDVST-WSTLIGGLAFHGFAE 352
M + ST W TL+ +G +E
Sbjct: 452 TIDKMPMKPNSTIWGTLLASCRVYGNSE 479
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 34/189 (17%)
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
V WNA+ISG+ G + + F +M VT +S+L+AC DL +G +VH
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186
Query: 294 LLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+L+ SGV NAL+DMYA+CG ++ A +F GM+ R +++W+++I GL G +
Sbjct: 187 VLE--SGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVD 244
Query: 353 -------------------------------ESIAMFREMQRLKVRPTEITFVGVLVACS 381
+++ FR MQ KVR E T V V+ AC+
Sbjct: 245 RARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACA 304
Query: 382 HAGKVEEGK 390
G +E G+
Sbjct: 305 QLGALETGE 313
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 173/550 (31%), Positives = 276/550 (50%), Gaps = 90/550 (16%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L ++C +++ LKQI A + N + +S L + + YA F I +P
Sbjct: 38 LLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYK------IADLKDFAYASVFFSNILDPTE 91
Query: 71 FMYNTIIRGSAQSQNPLD-AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+ +N +IRG + + N A+ Y++M+ +KPN T+ F+ AC+ LL G H
Sbjct: 92 YSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHC 151
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+++ G + + V +SLI +A CG + A +FD ++ D+V+W+S+ +GY++
Sbjct: 152 SVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGE 211
Query: 190 ARSLFDEM------P-----------------------VRDLVSWNVM----------IT 210
A LF EM P V + V N M I
Sbjct: 212 AVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIH 271
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
Y K G++ A +F+ + K+D V+WNAMI+GY GM+++A+++F++MR PD +T
Sbjct: 272 MYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQIT 331
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIERAIEVFLG 329
++ +L+ACA +G L++GK+V + G V G AL+DMYAKCGS++ A VF G
Sbjct: 332 LIGILSACASIGALDLGKQVE--IYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYG 389
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREM--QRLKVRPTEITFVGVLVACSHAGKVE 387
M +++ +W+ +I LAFHG A+E++A+F+ M + V P +ITFVGVL AC HAG V+
Sbjct: 390 MPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVD 449
Query: 388 EGKKYFKLMRDEYNIEPNIRHYGVHGD------------------------VELGRLAN- 422
EG++ F +M + + P I HY D V LG L
Sbjct: 450 EGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGA 509
Query: 423 --------------KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
K LL + SG+YV+ S +YA+ W+ ++R LM + K P
Sbjct: 510 CQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTP 569
Query: 469 GCSLIEADDK 478
GCS I+ + +
Sbjct: 570 GCSWIDINSQ 579
>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
Length = 594
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 167/513 (32%), Positives = 252/513 (49%), Gaps = 106/513 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D +++N +I+ + +P A+ L+ M + + +KF+ S VLKAC+RL + G +H
Sbjct: 65 DPYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIH 124
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD------------------ 170
G + K G + F++N LI + CG L A +FD + D
Sbjct: 125 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMK 184
Query: 171 ---------------VVAWSSLTAGYARRGE-LSMARSLFDEMPVRDLVSWNVMITGYAK 214
+++W+S+ +GYA+ + L+ A LF EMP +DL+SWN MI G K
Sbjct: 185 SAHKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVK 244
Query: 215 QGEMEKANELFNEVPKRDVVSW-------------------------------NAMISGY 243
G +E A LF+ +P+RDVV+W N+M++GY
Sbjct: 245 HGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGY 304
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
V + +ALE+F +M PD+ T++ +L+A A LG L +H +++ +
Sbjct: 305 VQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLG 364
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDM++KCGSI+ AI VF G+ ++ + W+ +IGGLA HG E + M +++
Sbjct: 365 GKL-GVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIE 423
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------ 410
R ++P ITF+GVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 424 RCSIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSI 483
Query: 411 ---------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E G L K L+ YVLLSN+Y
Sbjct: 484 ELAKHLIEDMPMEPNDVIWRSFLSACSTHEEFETGELVAKHLILQAGYNPSSYVLLSNMY 543
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
AS G W V +VR +M + K PGCS IE D
Sbjct: 544 ASLGMWKDVRRVRMMMKQRKLHKIPGCSWIELD 576
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 133/295 (45%), Gaps = 19/295 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G +++A +F ++ + D N+++ G Q++ ++A+ ++ MEK S + P++ T V
Sbjct: 277 GFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIV 336
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + +H IV+ F + +LI H+ CG + A +F+G +
Sbjct: 337 LSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVALIDMHSKCGSIQHAISVFEGIENKSI 396
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNE 227
W+++ G A G +A + ++ D +++ ++ + G +++ F
Sbjct: 397 DHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDXITFIGVLNACSHSGLVKEGLLCFEL 456
Query: 228 VPKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ ++ + + ++ G + A + E+M P+DV S L+AC+
Sbjct: 457 MRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLIEDMPM---EPNDVIWRSFLSACSTHE 513
Query: 283 DLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+ E G+ V H L + + VL L +MYA G + V + M+ R +
Sbjct: 514 EFETGELVAKHLILQAGYNPSSYVL----LSNMYASLGMWKDVRRVRMMMKQRKL 564
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 164/486 (33%), Positives = 253/486 (52%), Gaps = 73/486 (15%)
Query: 53 GAINYAHKMF--VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF 110
G + A ++F V+ E D ++ ++ Q++ +A+ L+ +M+ + ++
Sbjct: 216 GCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVS 275
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
L AC+R+L MG VHG VK G E ++N+LI+ +++CG++ A +FD
Sbjct: 276 ALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDG---- 331
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
GEL DL+SWN MI+GY + G ++ A LF +P+
Sbjct: 332 --------------GEL------------LDLISWNSMISGYLRCGSIQDAEMLFYSMPE 365
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
+DVVSW+AMISGY +AL +F+EM+ G RPD+ ++S ++AC L L++GK +
Sbjct: 366 KDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWI 425
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
H + V +L LIDMY KCG +E A+EVF M ++ VSTW+ +I GLA +G
Sbjct: 426 HAYISRNKLQVNVIL-STTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGS 484
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
E+S+ MF +M++ P EITF+GVL AC H G V +G+ YF M E+ IE NI+HYG
Sbjct: 485 VEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYG 544
Query: 411 V---------------------------------------HGDVELGRLANKRLLNMRKD 431
H D E+G ++L+ ++ D
Sbjct: 545 CMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPD 604
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKP 491
G +VLLSNIYAS+G W V ++R +M + K PGCS+IEA+ ++L K P
Sbjct: 605 HDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVH-EFLAGDKTHP 663
Query: 492 NSGNLD 497
+++
Sbjct: 664 QINDIE 669
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 219/415 (52%), Gaps = 35/415 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVKITEPD 69
L + C R KQ+ + + G +D A LI +S +Y+ ++F + P+
Sbjct: 9 LLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPN 68
Query: 70 TFMYNTIIRGSAQSQN-PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
TF +NTI+R QN P A+ Y KP+ +T+ +L+ C + G +H
Sbjct: 69 TFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLH 128
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
V GF+ + +VRN+L+ +A CG + +A +F+ +D+V+W++L AGY + GE+
Sbjct: 129 AHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVE 188
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV--PKRDVVSWNAMISGYVLC 246
A +F+ MP R+ ++ N MI + ++G +EKA +FN V +RD+VSW+AM+S Y
Sbjct: 189 EAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQN 248
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC-------------- 292
M ++AL +F EM+ G D+V ++S L+AC+ + ++E+G+ VH
Sbjct: 249 EMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLK 308
Query: 293 -TLLDMTSGVAKVLHG----------------NALIDMYAKCGSIERAIEVFLGMRDRDV 335
L+ + S +++ N++I Y +CGSI+ A +F M ++DV
Sbjct: 309 NALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDV 368
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+WS +I G A H E++A+F+EMQ VRP E V + AC+H ++ GK
Sbjct: 369 VSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGK 423
>gi|357445603|ref|XP_003593079.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360447|gb|ABN08457.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355482127|gb|AES63330.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 558
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 165/497 (33%), Positives = 259/497 (52%), Gaps = 78/497 (15%)
Query: 57 YAHKMFVKITE-PDTFMYNTIIRGSAQSQNPL-DAVFLYTQMEKCSIKPNKFTFSFVLKA 114
YAHK+F + + F++ ++IR + + +M + I P+ FTFS VL A
Sbjct: 65 YAHKLFDTMPNCSNCFIWTSLIRAFLSHHTHFCHCISTFARMHQKGILPSGFTFSLVLNA 124
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C R+ G VH ++V+ GF N+ V+ +L+ +A CG + A +FDG DVVAW
Sbjct: 125 CGRVPAGFEGKQVHARLVQSGFLGNKIVQTALLDMYAKCGHVCDARDVFDGIVDRDVVAW 184
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+++ GYA+ G + AR LFD M R+ +W M+ GYA G+M+ A EL++ + +D V
Sbjct: 185 TAMICGYAKAGRMVDARFLFDNMGERNSFTWTTMVAGYANYGDMKAAMELYDVMNGKDEV 244
Query: 235 SWNAMISGY----------------------------VLC----GMNKQALEMFEEMRSV 262
+W AMI+GY + C G ++A+EM+E+MR
Sbjct: 245 TWVAMIAGYGKLGNVSEARRIFDEITVPWNPSTCAALLACYAQNGHAREAIEMYEKMRRA 304
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH--GNALIDMYAKCGSI 320
+ DV M+ ++ACA L D+ + + ++ G + H NALI M +KCG+I
Sbjct: 305 KIKVTDVAMVGAISACAQLRDIRMSNSL---TYNIEEGFCEKTHIVSNALIHMQSKCGNI 361
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ A F MR+RD+ T+S +I A HG ++++I +F +MQ+ ++P ++TFVGVL AC
Sbjct: 362 DLAWREFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLKPNQVTFVGVLNAC 421
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
S +G +EEG ++F++M + Y IEP HY
Sbjct: 422 STSGLIEEGCRFFQIMTEMYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADATT 481
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
V+G+VELG +A + L + +SG+YVLL+N YAS +W E+V+KLM
Sbjct: 482 WGSLLAACRVYGNVELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWECAEEVKKLMSK 541
Query: 462 SDIKKQPGCSLIEADDK 478
+KK G S I+ + K
Sbjct: 542 KGMKKPSGYSWIQRETK 558
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 11/187 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I+ A + F + D + Y+ +I A+ DA+ L+ +M++ +KPN+ TF VL
Sbjct: 359 GNIDLAWREFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLKPNQVTFVGVL 418
Query: 113 KACTRLLYRNMGFCVHGKIVK--YGFEFNRFVRNSLIYFHANCGDLNTA-SVLFDGDAKM 169
AC+ G C +I+ YG E ++ G L A S++ +
Sbjct: 419 NACSTSGLIEEG-CRFFQIMTEMYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSA 477
Query: 170 DVVAWSSLTA-----GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANEL 224
D W SL A G GE++ AR LF+ P D ++ ++ YA + E A E+
Sbjct: 478 DATTWGSLLAACRVYGNVELGEIA-ARHLFEIDPT-DSGNYVLLANTYASNDKWECAEEV 535
Query: 225 FNEVPKR 231
+ K+
Sbjct: 536 KKLMSKK 542
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 168/535 (31%), Positives = 264/535 (49%), Gaps = 71/535 (13%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
+ L K C L+Q+ A + G D L L S + + ++YA +F ++ P
Sbjct: 33 TTLLKACKKREHLEQVHACIIHRGLEQDH-FLVFLFISRAHTLLSTLSYASSVFHRVLAP 91
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
T ++NT+I+ Q + + +M+ P+ FT+ V+KAC+ G +H
Sbjct: 92 STVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGKSLH 151
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G + G + + +V SLI + CG++ A +FDG + +VV+W+++ GY G++
Sbjct: 152 GSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVV 211
Query: 189 MARSLFDEMPVRDLVSWN-------------------------------VMITGYAKQGE 217
AR LFDEMP R++ SWN MI GYAK G+
Sbjct: 212 EARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGD 271
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
M A LF+ ++DVV+W+A+ISGYV G+ QAL +F EM + +PD+ ++SL++A
Sbjct: 272 MAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSA 331
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
A LG LE+ + V + + + + AL+DM AKCG++ERA+++F RDV
Sbjct: 332 SAQLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRRDVVL 391
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
+ ++I GL+ HG EE++ +F M + P E+ F +L ACS AG V+EG+ YF+ M+
Sbjct: 392 YCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQSMK 451
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
+Y I P HY ++GD ELG
Sbjct: 452 QKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWEPHAGAWGALLGACKLYGDSELG 511
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ RL + + +YVLLS+IYA+ W V VR M + ++K PG S I
Sbjct: 512 EIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLVRSKMRERRVRKIPGSSKI 566
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 164/500 (32%), Positives = 258/500 (51%), Gaps = 76/500 (15%)
Query: 41 RELIYSGSVVI----PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM 96
R +I S S+++ G + A K+F ++ + D ++ +I Q++ +A+ L+ +M
Sbjct: 221 RNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEM 280
Query: 97 EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156
I ++ VL AC+RLL G VHG +VK G E ++N+LI+ +++C ++
Sbjct: 281 NANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEV 340
Query: 157 NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG 216
TA LF +D ++W+S+ +GY + GE+ AR+LFD MP +D VSW+ MI+GYA+Q
Sbjct: 341 VTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQD 400
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
+ L +F+EM+ G +PD+ ++S+++
Sbjct: 401 RF-------------------------------TETLVLFQEMQIEGTKPDETILVSVIS 429
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
AC L L+ GK +H + + +L G LI+MY K G +E A+EVF G+ ++ VS
Sbjct: 430 ACTHLAALDQGKWIHAYIRKNGLKINIIL-GTTLINMYMKLGCVEDALEVFKGLEEKGVS 488
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
TW+ LI GLA +G ++S+ F EM+ V P EITFV VL AC H G V+EG ++F M
Sbjct: 489 TWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSM 548
Query: 397 RDEYNIEPNIRHYGV---------------------------------------HGDVEL 417
E+ I PNI+HYG +GD E
Sbjct: 549 IQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNET 608
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
G ++L+ + D G VLLSNIYAS+G W V +VR +M + K PGCS+IEA
Sbjct: 609 GERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHG 668
Query: 478 KAFLQYLFNLKPKPNSGNLD 497
+ ++L K P + +++
Sbjct: 669 RVH-EFLAGDKTHPQNEHIE 687
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 131/408 (32%), Positives = 233/408 (57%), Gaps = 30/408 (7%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+KC N++ QI + + ++GF DS A L+ + + IN ++++F I P+ F+
Sbjct: 34 QKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFI 93
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
NT+++G Q +P A+++Y M + ++ + +T+ + ++C+ L G C+ ++
Sbjct: 94 CNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVL 153
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K GF+ + +++N+LI +A CG+L+ A +FDG + +D+V+W+S+ AGY G + A+
Sbjct: 154 KVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKD 213
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
++D MP R++++ N MI + K+G +E+A +LFNE+ ++D+VSW+A+IS Y M ++A
Sbjct: 214 VYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEA 273
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC---------------TLLDM 297
L +F+EM + G D+V +LS+L+AC+ L + GK VH L+ M
Sbjct: 274 LILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHM 333
Query: 298 TSGVAKVLHG---------------NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
S +V+ N++I Y KCG IE+A +F M D+D +WS +I
Sbjct: 334 YSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMI 393
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
G A E++ +F+EMQ +P E V V+ AC+H +++GK
Sbjct: 394 SGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGK 441
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 7/183 (3%)
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
+ ++ ++F+ + + N M+ GY+ +A+ +++ M D+ T L +
Sbjct: 76 INQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQS 135
Query: 278 CA-DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
C+ L + + GK + +L + + V N LI+MYA CG++ A +VF G D+
Sbjct: 136 CSIRLAEFD-GKCIQDHVLKVGFD-SDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMV 193
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+W++++ G G EE+ ++ M V I ++V G VEE K F M
Sbjct: 194 SWNSMLAGYVLVGNVEEAKDVYDRMPERNV----IASNSMIVLFGKKGNVEEACKLFNEM 249
Query: 397 RDE 399
+ +
Sbjct: 250 KQK 252
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 158/414 (38%), Positives = 221/414 (53%), Gaps = 73/414 (17%)
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
+KPN+FT S V+KAC + G H I+K GFE
Sbjct: 6 VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFE----------------------- 42
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK 220
DVV ++L YAR G L A +FD+M R +WN MITG+A+ +M+K
Sbjct: 43 --------SDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKK 94
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A +LF E+ +RDVVSW A+I+GY G ++L +F +MR G + D M S+L+ACAD
Sbjct: 95 ALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACAD 154
Query: 281 LGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
L LE+G++ H ++ SG A ++ G+AL+DMYAK GS+E A +VF M R+ +W+
Sbjct: 155 LAALELGRQFHAYVVQ--SGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWN 212
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
++I G A HG +++ +F +M + ++P EI+FVGVL ACSH G V EG+ YF LM
Sbjct: 213 SIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQN 272
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y I P++ HY +HG+ EL +
Sbjct: 273 YGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKR 332
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ LL M +G YVLLSNIYA+ G+W+ KVRKLM D + KQPG S IE
Sbjct: 333 IAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIE 386
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 134/287 (46%), Gaps = 14/287 (4%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F +++E D + +I G AQ+ +++ ++ QM K +K ++F VL AC
Sbjct: 95 ALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACAD 154
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L +G H +V+ GF + V ++L+ +A G + A +FD + + V+W+S+
Sbjct: 155 LAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSI 214
Query: 178 TAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVPKR-- 231
G A+ G + A LF++M + +S+ +++ + G + + FN + +
Sbjct: 215 ITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYG 274
Query: 232 ---DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
DV + MI G +A M PD +LL AC G+ E+ K
Sbjct: 275 IVPDVSHYTCMIDLLGRAGCLDEAENFINGMPV---EPDVSVWGALLGACRIHGNTELAK 331
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
++ LL M +A + L ++YA G + A +V M+DR V
Sbjct: 332 RIAEHLLGMEVQIAGIY--VLLSNIYAAAGQWDDAAKVRKLMKDRGV 376
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 126/298 (42%), Gaps = 42/298 (14%)
Query: 2 RTNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSD---SSALRELIYSGSVVIPGAI 55
+++R + C +L L +Q A V +GF D SAL ++ Y+ S G++
Sbjct: 139 KSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDM-YAKS----GSM 193
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
A ++F K+ + + +N+II G AQ DAV L+ QM + IKPN+ +F VL AC
Sbjct: 194 EDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSAC 253
Query: 116 TRLLYRNMGFCVHGKIVK-YGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKMDVVA 173
+ N G + + YG + +I G L+ A +G + DV
Sbjct: 254 SHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSV 313
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG--------YAKQGEMEKANELF 225
W +L G +A+ + + L+ V I G YA G+ + A ++
Sbjct: 314 WGALLGACRIHGNTELAKRIAEH-----LLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVR 368
Query: 226 NEVPKRDVV-----SW-------NAMISGYVLCGMNKQALEMFE----EMRSVGERPD 267
+ R V+ SW +A ++G K+ E E +M++ G P+
Sbjct: 369 KLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVPN 426
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 183/596 (30%), Positives = 280/596 (46%), Gaps = 115/596 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C + + QI + G +S+ L ++I G + YA K+F +I +P
Sbjct: 41 LLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSV 100
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F++NT+I+G ++ V LY M +IKP+ FTF F+LK T+ + G +
Sbjct: 101 FIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNH 160
Query: 131 IVKYGF-EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
V +GF + N FV+ I+ + CG +N A +FD +VV W+ + +GY R
Sbjct: 161 AVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEE 220
Query: 190 ARSLFDEM----------------------PVRDLVSW--------------------NV 207
++ LF EM ++DLV N
Sbjct: 221 SKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENA 280
Query: 208 MITGYAKQGEMEKANELFNE-------------------------------VPKRDVVSW 236
+I +A GEM+ A +F+E +P+RD VSW
Sbjct: 281 LIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSW 340
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
AMI GY+ K+ L +F +M+ +PD+ TM+S+LTACA LG LE+G+ T +D
Sbjct: 341 TAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAK-TYID 399
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
GNALIDMY KCG++E+A ++F M+ +D TW+ +I GLA +G EE++
Sbjct: 400 KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALT 459
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
MF M V P EIT++GV+ AC+H G V +GK +F M ++ I+PN+ HYG
Sbjct: 460 MFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLL 519
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
VH +V+L +A +L + + YV
Sbjct: 520 GRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYV 579
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
LL NIYA+ +W + VRK+M + IKK PGCSL+E + + +++ K P S
Sbjct: 580 LLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVY-EFVAGDKSHPQS 634
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/481 (33%), Positives = 258/481 (53%), Gaps = 41/481 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L K C ++ LKQI + G S+ ++I G + YA +F + P+
Sbjct: 25 LIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNH 84
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F++N +I+G ++ P AV +Y +M + + P+++T+ F+LK TR G +H
Sbjct: 85 FVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDH 144
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
IVK GF N FV+N+LI+ ++ G+++ A +FD +K DVV W+ + +GY R + +
Sbjct: 145 IVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDES 204
Query: 191 RSLFDEMP-VRDLVSWNVMITGYAKQGEMEKAN-------ELFNEVPKRDVVSWNAMISG 242
LFDEM +R L S +++ + +++ N F+++P+RD VSW AMI G
Sbjct: 205 MKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRNYFDKMPERDFVSWTAMIDG 264
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
Y+ K+ L +F EM++ +PD+ TM+S+LTACA LG LE+G+ + +D
Sbjct: 265 YLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIK-AYIDKNEIKI 323
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
GNALIDMY CG++E+AI +F M RD +W+ +I GLA +G+ EE++ MF +M
Sbjct: 324 DSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQML 383
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------VHGDV 415
+ + P E+ ++PN +G VH D
Sbjct: 384 KASITPDEVI-------------------------KNMPVKPNSIVWGSLLGACRVHRDE 418
Query: 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
E+ +A +++L + + YVLL NIYA+ W ++ +VRKLM D IKK PGCSLIE
Sbjct: 419 EMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEM 478
Query: 476 D 476
+
Sbjct: 479 N 479
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 173/550 (31%), Positives = 275/550 (50%), Gaps = 90/550 (16%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L ++C +++ LKQI A + N + +S L + + YA F I +P
Sbjct: 38 LLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYK------IADLKDFAYASVFFSNILDPTE 91
Query: 71 FMYNTIIRGSAQSQNPLD-AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+ +N +IRG + + N A+ Y++M+ +KPN T+ F+ AC+ LL G H
Sbjct: 92 YSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHC 151
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+++ G + + V +SLI +A CG + A +FD ++ D+V+W+S+ +GY++
Sbjct: 152 SVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGE 211
Query: 190 ARSLFDEM------P-----------------------VRDLVSWNVM----------IT 210
A LF EM P V + V N M I
Sbjct: 212 AVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIH 271
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
Y K G++ A +F+ + K+D V+WNAMI+GY GM+++A+++F++MR PD +T
Sbjct: 272 MYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQIT 331
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIERAIEVFLG 329
++ +L+ACA +G L++GK+V + G V G AL+DMYAKCGS++ A VF G
Sbjct: 332 LIGILSACASIGALDLGKQVE--IYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYG 389
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREM--QRLKVRPTEITFVGVLVACSHAGKVE 387
M ++ +W+ +I LAFHG A+E++A+F+ M + V P +ITFVGVL AC HAG V+
Sbjct: 390 MPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVD 449
Query: 388 EGKKYFKLMRDEYNIEPNIRHYGVHGD------------------------VELGRLAN- 422
EG++ F +M + + P I HY D V LG L
Sbjct: 450 EGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGA 509
Query: 423 --------------KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
K LL + SG+YV+ S +YA+ W+ ++R LM + K P
Sbjct: 510 CQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTP 569
Query: 469 GCSLIEADDK 478
GCS I+ + +
Sbjct: 570 GCSWIDINSQ 579
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 177/496 (35%), Positives = 250/496 (50%), Gaps = 81/496 (16%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
LKQIQA NG + L+ IP +I YAHK+F I +P F+YN +I+
Sbjct: 4 LKQIQAYTLRNGIEHTKQLIVSLLQ-----IP-SIPYAHKLFDFIPKPTVFLYNKLIQAY 57
Query: 81 AQSQNPLDAVF-LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN 139
+ S P F LYTQM PN+ +F+F+ AC L G +H VK GF +
Sbjct: 58 S-SHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCD 116
Query: 140 RFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV 199
F +L+ +A G L+ A FD DV W+S+ AGYAR G+L A LF MP
Sbjct: 117 VFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPA 176
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
R++ SW MI+GYA+ G+ KA +F L M EE
Sbjct: 177 RNVTSWTAMISGYAQNGQYAKALSMF---------------------------LMMEEET 209
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCG 318
RP++VT+ S+L ACA+LG LEVG+++ + +G K L+ NAL++MYA+CG
Sbjct: 210 EM---RPNEVTLASVLPACANLGALEVGERIE--VYARGNGYFKNLYVSNALLEMYARCG 264
Query: 319 SIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
I++A VF + R++ +W+++I GLA HG +E+I +F +M R P ++TFVGVL
Sbjct: 265 RIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVL 324
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------------------- 411
+AC+H G V EG+ +F+ M +++I P + HYG
Sbjct: 325 LACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPD 384
Query: 412 -------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
HG VEL A L + G+YV+LSNIYA+ G W+ V ++RKL
Sbjct: 385 SVVWGTLLGACSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKL 444
Query: 459 MDDSDIKKQPGCSLIE 474
M I K G S IE
Sbjct: 445 MKGGKITKAAGYSFIE 460
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/512 (30%), Positives = 258/512 (50%), Gaps = 77/512 (15%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV--IPGAINYAHKMFVKITEPDTFM 72
CT L KQ+ A + N + S + L+ + + IP Y H +F ++ P+ F+
Sbjct: 21 CTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIP-VHTYPHLLFSQVHSPNPFL 79
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
Y+ +IR A++ ++ LYT M ++ P FTFS + + L ++G +H
Sbjct: 80 YSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF---SLLKNPSLGSQLHLHAF 136
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
+GF + +V N++I+ Y + G L AR
Sbjct: 137 LFGFVNDLYVGNTIIHM-------------------------------YVKFGVLDCARK 165
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
+FDEMP RD+V+W +I YA+ G+M+ A ELF +P +D+V+W +M++GY M K+A
Sbjct: 166 VFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKA 225
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALI 311
L+ F +MR G D++T++ ++ACA LG + G + V G+ALI
Sbjct: 226 LQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALI 285
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DMY+KCG++E A VF GM++ +V ++S++I G A HG A +I +F EM ++P +
Sbjct: 286 DMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHV 345
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TFVG+ ACSHAG VE+G++ F M++ Y + P HY
Sbjct: 346 TFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQT 405
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+HG+ ++ +A++ L + D G+Y+LLS YA +W+ V
Sbjct: 406 MPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDV 465
Query: 453 EKVRKLMDDSDIKKQPGCSLIEADDKAFLQYL 484
+VRKLM + ++K PGCS +EA + ++
Sbjct: 466 SRVRKLMREKQLRKNPGCSWVEAKNGIIHEFF 497
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 164/527 (31%), Positives = 266/527 (50%), Gaps = 85/527 (16%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+KC+NL LKQ+Q + +G + +L+ ++ + + YA +F +T P+ F+
Sbjct: 51 EKCSNLNHLKQLQGFLISHGHSQTQFFAFKLVRFCNLTL-ADLCYARYIFDNLTSPNVFL 109
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
Y +I A +P A LY M + +I+PN F + VL++C +L N VH ++
Sbjct: 110 YTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVLGSNATKMVHTQV 169
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR-RGELSMA 190
+K GF V+ +++ Y+R ++ A
Sbjct: 170 LKSGFGGYPVVQTAIV-------------------------------DSYSRFSSDIGSA 198
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +FDEM R +VSW MI+GYA+ G + A ELF +P+RDV +WNA+I+G G
Sbjct: 199 RQMFDEMLERTVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFC 258
Query: 251 QALEMFEEMRSVG---------ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
+A+ +F+ M + +P+ T+ S L+AC G L +GK +H + G
Sbjct: 259 EAIWLFKRMVLLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQ 318
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ NAL+DMY KCG+++ A VF + +++++W++LI LA HG + +I +F E+
Sbjct: 319 DSFI-SNALLDMYGKCGNLKVARRVFDMITLKNLTSWNSLINCLALHGHSGSAIDLFAEL 377
Query: 362 QRL--KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
V+P E+TFVGVL AC+H G VE+G YF++MR +Y+IEP I H+G
Sbjct: 378 IHCGDGVKPNEVTFVGVLNACTHGGLVEKGYSYFEMMRRDYDIEPQIEHFGCLIDLLGRA 437
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
+HG +L + K+L+ M G ++L+
Sbjct: 438 GRFEEAMEVVRGMNIEPDEVVWGSLLNACKIHGRSDLAEYSVKKLIEMDPKNGGYRIMLA 497
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNL 487
NIYA G+W+ V KVR+L+ + + K PGCS IE D++ + Y F++
Sbjct: 498 NIYAEFGKWDEVRKVRRLLKEKNAYKTPGCSWIEVDNQVYQFYSFDM 544
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/479 (32%), Positives = 245/479 (51%), Gaps = 83/479 (17%)
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+IRG A + +V LY + + +KP+ FT+ FVLK+C L + G VH +I+K G
Sbjct: 1 MIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTG 60
Query: 136 FEFNRFVRNSLIYFHAN------------------------------------------C 153
F N V ++L + + N
Sbjct: 61 FSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTST 120
Query: 154 GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYA 213
GD++ A LF+ D V+W+++ +GY + GE+ AR LF++MP +++VSW MI+ YA
Sbjct: 121 GDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKMPEKNVVSWTSMISAYA 180
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
K G++ A FN++P+R+VVSWN+MIS YV G ++AL++F +M S G PD T +S
Sbjct: 181 KAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVS 240
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
+ +AC+ LG+L +G K+H + D + V+ ALI+MYAKCG I RA +F+ + +
Sbjct: 241 VFSACSHLGNLMLGTKIHYAIDDFSQ--LGVIAATALIEMYAKCGDINRAFNLFIKIGKK 298
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
DV W+ ++ LA HG A++++ +F MQ+ ++P + TF+G L ACSH G VEEG+ F
Sbjct: 299 DVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQTIF 358
Query: 394 KLMRDEYNIEPNIRHYG---------------------------------------VHGD 414
+M EY I P I H+G + GD
Sbjct: 359 DMMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRGD 418
Query: 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ +R +R E G +V SN+YAS +W R+ M++ +I K+ G S +
Sbjct: 419 FKRAGEIVERARKLRSKEGGIHVSFSNMYASVEQWAEAVNAREKMENENILKKTGQSSV 477
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 145/340 (42%), Gaps = 86/340 (25%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A K+F + + DT +NT+I G + + A L+ +M P K S+
Sbjct: 121 GDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKM------PEKNVVSWT- 173
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
S+I +A GDL TA + F+ + +VV
Sbjct: 174 --------------------------------SMISAYAKAGDLATARMFFNKMPQRNVV 201
Query: 173 AWSSLTAGYARRGELSMARSLFDEM---------------------------------PV 199
+W+S+ + Y + G+ A LF++M +
Sbjct: 202 SWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACSHLGNLMLGTKIHYAI 261
Query: 200 RD-----LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
D +++ +I YAK G++ +A LF ++ K+DV WN M+ L G + AL+
Sbjct: 262 DDFSQLGVIAATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALK 321
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL----HGNAL 310
+F M+ G +P+D T L L AC+ G +E G+ T+ DM K+ H +
Sbjct: 322 LFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQ----TIFDMMEKEYKIRPRIEHFGCI 377
Query: 311 IDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHG 349
+D+ ++ G +E A++V M + DV+ W L+GG G
Sbjct: 378 VDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRG 417
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 35/181 (19%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G IN A +F+KI + D F +N +++ A DA+ L++ M+K +KPN FTF L
Sbjct: 283 GDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGAL 342
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM--D 170
AC+ HG +V+ G T + + + K+
Sbjct: 343 FACS-----------HGGMVEEG---------------------QTIFDMMEKEYKIRPR 370
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVR-DLVSWNVMITGYAKQGEMEKANELFNEVP 229
+ + + +R G L A + D+MP D+ W ++ G +G+ ++A E+
Sbjct: 371 IEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRGDFKRAGEIVERAR 430
Query: 230 K 230
K
Sbjct: 431 K 431
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/527 (32%), Positives = 261/527 (49%), Gaps = 110/527 (20%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C ++R L +I A + ING+ + S +L+ +V + G++ YA +F +I P T
Sbjct: 29 LLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQT 88
Query: 71 FMYNTIIRGSAQSQNPLD--AVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFC- 126
+N++IRG +QS +PL A+ Y M S +P+ +TFSF+LKAC + G C
Sbjct: 89 PAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEA--KEEGKCR 146
Query: 127 -VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
VHG I+++G++ DVV ++L YA G
Sbjct: 147 EVHGFIIRFGYD-------------------------------QDVVLCTNLIRSYAGNG 175
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+ A +F+EMP RDLVSWN MI+ Y +
Sbjct: 176 LIETAHKVFEEMPARDLVSWNSMISCYCQT------------------------------ 205
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
G++++AL+M+++MR D T++SLL++CA +G L +G ++H V +
Sbjct: 206 -GLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMH-RFAGERRLVENIF 263
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
GNALIDMYAKCGS+ A+ +F M RDV TW+++I G HG +E+I F M
Sbjct: 264 VGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAG 323
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
VRP ITF+G+L CSH G V+EG +YF +M E+N++P I+HYG
Sbjct: 324 VRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEA 383
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+H +VE+G +A + L+ + +GD VLLS IYA
Sbjct: 384 LEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEA 443
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
+ V ++RKL+ IK PG S IE D+ +++ + K P+S
Sbjct: 444 KDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVH-RFVVDDKSHPDS 489
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 180/398 (45%), Gaps = 38/398 (9%)
Query: 2 RTNRHRSSRLWKKCTNLR---TLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAIN 56
R + + S L K C + +++ + G++ D LI Y+G+ G I
Sbjct: 123 RPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGN----GLIE 178
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
AHK+F ++ D +N++I Q+ +A+ +Y QM ++ + FT +L +C
Sbjct: 179 TAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCA 238
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
+ +MG +H + N FV N+LI +A CG L +A +F+ K DV W+S
Sbjct: 239 HVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNS 298
Query: 177 LTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVP--- 229
+ GY G A + F M + + +++ ++ G + QG +++ + F+ +
Sbjct: 299 MIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEF 358
Query: 230 --KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
K + + M+ + G K+ALE+ +RS + D V +LL +C ++E+G
Sbjct: 359 NLKPGIKHYGCMVDLFGRAGKLKEALEV---IRSSPSQHDPVLWRTLLGSCKIHRNVEIG 415
Query: 288 KKVHCTLLDMTS---GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST---WSTL 341
+ L+ + S G +L G +YA+ ++ + ++ R + T WS +
Sbjct: 416 EMAMRNLVQLGSLGAGDCVLLSG-----IYAEAKDLQGVARMRKLIQSRGIKTTPGWSWI 470
Query: 342 IGGLAFHGFA------EESIAMFREMQRLKVRPTEITF 373
G H F +S ++R+++ + R + + +
Sbjct: 471 EVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGY 508
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/527 (32%), Positives = 261/527 (49%), Gaps = 110/527 (20%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C ++R L +I A + ING+ + S +L+ +V + G++ YA +F +I P T
Sbjct: 11 LLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQT 70
Query: 71 FMYNTIIRGSAQSQNPLD--AVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFC- 126
+N++IRG +QS +PL A+ Y M S +P+ +TFSF+LKAC + G C
Sbjct: 71 PAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEA--KEEGKCR 128
Query: 127 -VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
VHG I+++G++ DVV ++L YA G
Sbjct: 129 EVHGFIIRFGYD-------------------------------QDVVLCTNLIRSYAGNG 157
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+ A +F+EMP RDLVSWN MI+ Y +
Sbjct: 158 LIETAHKVFEEMPARDLVSWNSMISCYCQT------------------------------ 187
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
G++++AL+M+++MR D T++SLL++CA +G L +G ++H V +
Sbjct: 188 -GLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMH-RFAGERRLVENIF 245
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
GNALIDMYAKCGS+ A+ +F M RDV TW+++I G HG +E+I F M
Sbjct: 246 VGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAG 305
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
VRP ITF+G+L CSH G V+EG +YF +M E+N++P I+HYG
Sbjct: 306 VRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEA 365
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+H +VE+G +A + L+ + +GD VLLS IYA
Sbjct: 366 LEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEA 425
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
+ V ++RKL+ IK PG S IE D+ +++ + K P+S
Sbjct: 426 KDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVH-RFVVDDKSHPDS 471
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 180/398 (45%), Gaps = 38/398 (9%)
Query: 2 RTNRHRSSRLWKKCTNLR---TLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAIN 56
R + + S L K C + +++ + G++ D LI Y+G+ G I
Sbjct: 105 RPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGN----GLIE 160
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
AHK+F ++ D +N++I Q+ +A+ +Y QM ++ + FT +L +C
Sbjct: 161 TAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCA 220
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
+ +MG +H + N FV N+LI +A CG L +A +F+ K DV W+S
Sbjct: 221 HVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNS 280
Query: 177 LTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVP--- 229
+ GY G A + F M + + +++ ++ G + QG +++ + F+ +
Sbjct: 281 MIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEF 340
Query: 230 --KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
K + + M+ + G K+ALE+ +RS + D V +LL +C ++E+G
Sbjct: 341 NLKPGIKHYGCMVDLFGRAGKLKEALEV---IRSSPSQHDPVLWRTLLGSCKIHRNVEIG 397
Query: 288 KKVHCTLLDMTS---GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST---WSTL 341
+ L+ + S G +L G +YA+ ++ + ++ R + T WS +
Sbjct: 398 EMAMRNLVQLGSLGAGDCVLLSG-----IYAEAKDLQGVARMRKLIQSRGIKTTPGWSWI 452
Query: 342 IGGLAFHGFA------EESIAMFREMQRLKVRPTEITF 373
G H F +S ++R+++ + R + + +
Sbjct: 453 EVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGY 490
>gi|147799976|emb|CAN68263.1| hypothetical protein VITISV_010806 [Vitis vinifera]
Length = 445
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 242/404 (59%), Gaps = 12/404 (2%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAH--KMFVKITEPDTFMYNTIIR 78
L Q A + ++G S + L+ ++ P A + H +F+ P FM+NTII
Sbjct: 29 LHQAHAHLIVSGLASHPFTVTRLLACAALS-PSASDLPHAKTIFLHTHNPSPFMFNTIIM 87
Query: 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEF 138
S+++ LD+V Y M P+ FTF F++K+ + +G +H +VK+G +
Sbjct: 88 ASSRT---LDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLDR 144
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKM-DVVAWSSLTAGYARRGELSMARSLFDEM 197
+ FV N++I +++ +L +A +FD + DVV+W++L G++ G++ AR +FD M
Sbjct: 145 DVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLM 204
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
P+++ VSWN MI+GYA + +A +LF+E+P RD SW+AM+SGY GM +AL++F
Sbjct: 205 PLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFM 264
Query: 258 EMRSVGER--PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
EM + G++ P++ ++S ++ACA L LE G+ +H + + + L G L+DMY
Sbjct: 265 EMVT-GDKMIPNEAALVSAVSACAQLXALEEGRWLHSYIKEKKLRINVTL-GTVLLDMYG 322
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
KCGSI A VF M +R+V++W+++I GLA +G +E++ +F +MQ + P ITF+
Sbjct: 323 KCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALXLFWKMQFVGPSPNAITFIA 382
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419
+L CSH+G + EG+ F +M Y I+P ++HYG D+ LGR
Sbjct: 383 LLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDL-LGR 425
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 40/227 (17%)
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
N N++I +A +N A LFD D +WS++ +GY++ G + A LF EM
Sbjct: 208 NTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMV 267
Query: 199 VRD--------LVS---------------W-----------------NVMITGYAKQGEM 218
D LVS W V++ Y K G +
Sbjct: 268 TGDKMIPNEAALVSAVSACAQLXALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGKCGSI 327
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
A +FN + +R+V SWN+MI+G L G K+AL +F +M+ VG P+ +T ++LLT C
Sbjct: 328 LDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALXLFWKMQFVGPSPNAITFIALLTGC 387
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
+ G + G+ + + + ++ H ++D+ + G ++ A++
Sbjct: 388 SHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALD 434
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/504 (30%), Positives = 258/504 (51%), Gaps = 79/504 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+ ++F K+ D +NT+I G A+ N +A +Y QM++ + PNK T+ +L
Sbjct: 394 GSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILL 453
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + G +H ++VK GF F+ V+N+LI +A CG + A +LF+ + D++
Sbjct: 454 NACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDII 513
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL-------------------VSW-------- 205
+W+++ G A+ G + A ++F +M L + W
Sbjct: 514 SWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQV 573
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
N ++ Y+ G ++ A ++F+ + +RD+V++NAMI GY + K+AL
Sbjct: 574 IEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEAL 633
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
++F+ ++ G +PD VT +++L ACA+ G LE K++H +L ++ GNAL+
Sbjct: 634 KLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLK-DGYLSDTSLGNALVST 692
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YAKCGS A+ VF M R+V +W+ +IGG A HG ++ + +F M+ ++P +TF
Sbjct: 693 YAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTF 752
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------- 410
V +L ACSHAG +EEG++YF M ++ I P I HYG
Sbjct: 753 VSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMP 812
Query: 411 ----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
+HG+V + A + L + D + YV LS++YA+ G W+ K
Sbjct: 813 FQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAK 872
Query: 455 VRKLMDDSDIKKQPGCSLIEADDK 478
+RKLM+ + K+PG S IE DK
Sbjct: 873 LRKLMEQRGVTKEPGRSWIEVGDK 896
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 197/389 (50%), Gaps = 43/389 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+I+ A ++F K+ + II G A + A ++ +M++ + PN+ T+ VL
Sbjct: 293 GSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVL 352
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A + G VH I+ G E + V +L+ +A CG +F+ D++
Sbjct: 353 NAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLI 412
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP---------------------------------- 198
AW+++ G A G A ++ +M
Sbjct: 413 AWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRV 472
Query: 199 -----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
+ D+ N +I+ YA+ G ++ A LFN++ ++D++SW AMI G G+ +AL
Sbjct: 473 VKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEAL 532
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALID 312
+F++M+ G +P+ VT S+L AC+ L+ G+++H +++ +G+A H N L++
Sbjct: 533 AVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIE--AGLATDAHVANTLVN 590
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+ CGS++ A +VF M RD+ ++ +IGG A H +E++ +F +Q ++P ++T
Sbjct: 591 MYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVT 650
Query: 373 FVGVLVACSHAGKVEEGKKYFKL-MRDEY 400
++ +L AC+++G +E K+ L ++D Y
Sbjct: 651 YINMLNACANSGSLEWAKEIHSLVLKDGY 679
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/420 (25%), Positives = 197/420 (46%), Gaps = 48/420 (11%)
Query: 53 GAINYAHKMFVKI--TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF 110
G+I A +++ K+ TE +N ++ G Q +A+ L +M++ + + T
Sbjct: 190 GSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMR 249
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
+L +C G +H + +K F+ V N ++ +A CG ++ A +FD
Sbjct: 250 LLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKS 309
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEM------PVR------------------------ 200
VV+W+ + GYA G +A +F +M P R
Sbjct: 310 VVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHS 369
Query: 201 ---------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
DL ++ YAK G + ++F ++ RD+++WN MI G G ++
Sbjct: 370 HILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEE 429
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
A E++ +M+ G P+ +T + LL AC + L G+++H ++ + + NALI
Sbjct: 430 ASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVK-DGFMFDISVQNALI 488
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
MYA+CGSI+ A +F M +D+ +W+ +IGGLA G E++A+F++MQ+ ++P +
Sbjct: 489 SMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRV 548
Query: 372 TFVGVLVACSHAGKVEEGKKYFK------LMRDEYNIEPNIRHYGVHGDVELGRLANKRL 425
T+ +L ACS ++ G++ + L D + + Y + G V+ R R+
Sbjct: 549 TYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRM 608
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 115/434 (26%), Positives = 194/434 (44%), Gaps = 56/434 (12%)
Query: 11 LWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
L C N L ++I + V +GF D S LI G+I A +F K+
Sbjct: 452 LLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALI--SMYARCGSIKDARLLFNKMVR 509
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
D + +I G A+S +A+ ++ M++ +KPN+ T++ +L AC+ + G +
Sbjct: 510 KDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRI 569
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H ++++ G + V N+L+ ++ CG + A +FD + D+VA++++ GYA
Sbjct: 570 HQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLG 629
Query: 188 SMARSLFDEMPVRDL-------------------VSW--------------------NVM 208
A LFD + L + W N +
Sbjct: 630 KEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNAL 689
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
++ YAK G A +F+++ KR+V+SWNA+I G G + L++FE M+ G +PD
Sbjct: 690 VSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDI 749
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
VT +SLL+AC+ G LE G++ C++ + H ++D+ + G ++ +E +
Sbjct: 750 VTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDE-VEALI 808
Query: 329 GMRDRDVST--WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH---- 382
+T W L+G HG +A LK+ P V VA SH
Sbjct: 809 KTMPFQANTRIWGALLGACRIHG--NVPVAERAAESSLKLDPDN---AAVYVALSHMYAA 863
Query: 383 AGKVEEGKKYFKLM 396
AG + K KLM
Sbjct: 864 AGMWDSAAKLRKLM 877
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 189/387 (48%), Gaps = 48/387 (12%)
Query: 90 VFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF 149
V Y Q + + N + +LK C + G VH I+++ +++ N+LI
Sbjct: 128 VVQYLQQQGARV--NSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINM 185
Query: 150 HANCGDLNTASVLFD--GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR------- 200
+ CG + A +++ + V +W+++ GY + G + A L EM
Sbjct: 186 YIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRA 245
Query: 201 --------------------------------DLVSWNVMITGYAKQGEMEKANELFNEV 228
D+ N ++ YAK G + +A E+F+++
Sbjct: 246 TTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKM 305
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
+ VVSW +I GY CG ++ A E+F++M+ G P+ +T +++L A + L+ GK
Sbjct: 306 ETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGK 365
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
VH +L+ + + G AL+ MYAKCGS + +VF + +RD+ W+T+IGGLA
Sbjct: 366 TVHSHILN-AGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 424
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIEPNIR 407
G EE+ ++ +MQR + P +IT+V +L AC + + G++ + ++++D + + +++
Sbjct: 425 GNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ 484
Query: 408 HYGVHGDVELGRLANKRLL---NMRKD 431
+ + G + + RLL +RKD
Sbjct: 485 NALISMYARCGSIKDARLLFNKMVRKD 511
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 82/149 (55%), Gaps = 15/149 (10%)
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH------CTLLDMTSGVAKV 304
+A+++ + ++ G R + + +L C ++ DL G++VH CT+LD +
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTV---- 179
Query: 305 LHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
NALI+MY +CGSIE A +V+ L +R V +W+ ++ G +G+ EE++ + REMQ
Sbjct: 180 ---NALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQ 236
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+ + T + +L +C +E G++
Sbjct: 237 QHGLALGRATTMRLLSSCKSPSALECGRE 265
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 183/589 (31%), Positives = 283/589 (48%), Gaps = 124/589 (21%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGF--NSDSSALRELIYSGSVVIPGAINYAHKMF----V 63
+L +C + +I A + G NS+ S L ++ S P +A +F V
Sbjct: 20 QLLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPR-PYLAEFARLVFREYHV 78
Query: 64 KITEP-----DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA---- 114
+ P D F++N +I+ + ++P A+ L+ M + + +KF+ S VLKA
Sbjct: 79 CSSSPGGEVEDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRL 138
Query: 115 ------------------CTRLLYRNMGFCVHGKIVKYG-----------------FEFN 139
C+ L +N C+ G +K G FN
Sbjct: 139 GFVKGGLQIHGILRKTGLCSDLFLQN---CLIGLYLKCGCLGFARQIFDRMPQRDSVSFN 195
Query: 140 RFVR----------------------------NSLIYFHANCGD-LNTASVLFDGDAKMD 170
+ NS+I +A D ++ AS LF + D
Sbjct: 196 SMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKD 255
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
+++W+S+ GY + G + A+ LFD MP RD+V+W MI GYAK G + +A LF+++P
Sbjct: 256 LISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPH 315
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKK 289
RDVVS+N+M++GYV + +ALE+F +M PD+ T++ +L+A A LG L
Sbjct: 316 RDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 375
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
+H +++ + L G ALIDMY+KCGSI+ A+ VF G+ ++ + W+ +IGGLA HG
Sbjct: 376 MHLYIVEKQFFLGGKL-GVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHG 434
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
E + M +++R ++P +ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HY
Sbjct: 435 LGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 494
Query: 410 GV---------------------------------------HGDVELGRLANKRLLNMRK 430
G H + E G L K L+
Sbjct: 495 GCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQAG 554
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
YVLLSN+YAS G+W V ++R +M + I+K PGCS IE D +
Sbjct: 555 YNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWIELDGRV 603
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 169/508 (33%), Positives = 259/508 (50%), Gaps = 78/508 (15%)
Query: 11 LWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
L K C LR A V G +SD + + S I G + A ++F +
Sbjct: 131 LLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLS--IRGPMEDARRLFDRSPV 188
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
D +NT+I G + NP +A+ L+ +M E ++P++ T + C ++ +G
Sbjct: 189 RDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGR 248
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG + G + N+L+ + CG L
Sbjct: 249 RLHGFVDSDGVSCTVRLMNALMDMYIKCGSLE---------------------------- 280
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
MA+S+F+ + R +VSW MI G+AK G M+ A ++F+E+P+RDV WNA+++GYV
Sbjct: 281 ---MAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQ 337
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
C K+AL +F EM+ PD++TM++LLTAC+ LG LE+G VH ++ V V
Sbjct: 338 CKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVH-RYIEKHRLVFSVA 396
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
G +LIDMYAKCG+IE+AI +F + +++ TW+ +I GLA HG A E+I FR M L
Sbjct: 397 LGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELG 456
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
+P EITF+GVL AC HAG V+EG+++F LM +Y++E ++HY
Sbjct: 457 QKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEA 516
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+ G++ LG A +L+ + +SG YVLL+N+YA
Sbjct: 517 EQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEA 576
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ +KVR +M ++K PGCS IE
Sbjct: 577 NMRKKADKVRAMMRHLGVEKVPGCSCIE 604
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 247 GMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKV--HCTLLDMTSGVAK 303
G+ ++ L ++ + RS RPD +T LL ACA L + G H L + S V
Sbjct: 103 GVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFV 162
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-- 361
V NA + G +E A +F RD+ +W+TLIGG G E++ +F M
Sbjct: 163 V---NAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVA 219
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+ VRP E+T + + C +E G++
Sbjct: 220 EDAVVRPDEVTMIAAVSGCGQMRDLELGRR 249
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 173/560 (30%), Positives = 270/560 (48%), Gaps = 84/560 (15%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYA 58
R N S + CT L Q I + G++SD+ + L+ + V G + A
Sbjct: 108 RPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKV--GILEDA 165
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
+F +I +PD +N II G + A+ L +M K + PN FT S LKAC +
Sbjct: 166 SSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGM 225
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
R +G +H ++K + F+ LI ++ C ++ A ++F + D++AW+++
Sbjct: 226 ALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVI 285
Query: 179 AGYARRGELSMARSLFDEMPVR-------------------------------------- 200
+G+++ E A SLF M
Sbjct: 286 SGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFE 345
Query: 201 -DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
D N +I Y K G +E A +F E P D+V + ++++ Y G ++AL ++ EM
Sbjct: 346 FDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEM 405
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
+ G +PD SLL ACA L E GK+VH +L ++ + GN+L++MYAKCGS
Sbjct: 406 QDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKF-GFMSDIFAGNSLVNMYAKCGS 464
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
IE A F + R + +WS +IGGLA HG+ +E++ +F++M ++ V P IT V VL A
Sbjct: 465 IEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCA 524
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
C+HAG V E K YF M+ + IEP HY
Sbjct: 525 CNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANAL 584
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+H +++LG A + LL + ++SG +VLL+NIYAS G W++V +VR+LM
Sbjct: 585 VWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMK 644
Query: 461 DSDIKKQPGCSLIEADDKAF 480
D +KK+PG S +E DK +
Sbjct: 645 DGKVKKEPGMSWLEVKDKVY 664
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 125/478 (26%), Positives = 215/478 (44%), Gaps = 63/478 (13%)
Query: 2 RTNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVI---PGAI 55
+ N + K CT + L KQ+ +V + GF+SD E + + V++ G
Sbjct: 7 KCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSD-----EFVANSLVILYAKCGGF 61
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
A +F I + +N + S +AV L+ M I+PN+F+ S ++ C
Sbjct: 62 GDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVC 121
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
T L G +HG ++K G++ + F N+L+ +A G L AS +FD AK D+V+W+
Sbjct: 122 TGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWN 181
Query: 176 SLTAG------YARRGEL-----------------------------SMARSLFDEMPVR 200
++ AG + R EL + R L +
Sbjct: 182 AIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKM 241
Query: 201 DLVSWNVMITG----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
D+ S + + G Y+K M+ A +F +P+RD+++WNA+ISG+ +++A +F
Sbjct: 242 DMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLF 301
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA---KVLHGNALIDM 313
M + G + T+ ++L + A L + +++H L + SG V+ N+LID
Sbjct: 302 PLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHA--LSLKSGFEFDNYVV--NSLIDT 357
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
Y KCG +E A VF D+ +++L+ A G EE++ ++ EMQ ++P
Sbjct: 358 YGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVC 417
Query: 374 VGVLVACSHAGKVEEGKKY------FKLMRDEYNIEPNIRHYGVHGDVELGRLANKRL 425
+L AC+ E+GK+ F M D + + Y G +E A R+
Sbjct: 418 SSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRI 475
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 174/560 (31%), Positives = 272/560 (48%), Gaps = 85/560 (15%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIY-SGSVVIPGAINYAH 59
N H S C ++ LKQI + S + + +LI+ S S + Y
Sbjct: 2 NSLQLHLFSHSLNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIR 61
Query: 60 KMFVKITEPDTF---MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
+ + + F + N IIR +++ L + +M ++P+ FT VLKA
Sbjct: 62 SILLTHSHDAQFCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALA 121
Query: 117 RLLYRNMGFCVHGKIVKYGF-EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+ G +H + +K G FN +V N+L+ ++ CG ++ +FD D+V+W+
Sbjct: 122 LIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWT 181
Query: 176 SLTAGYARRGELSMARSLFDEMP---------------------------------VR-- 200
+L + + G S A F EM +R
Sbjct: 182 TLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHY 241
Query: 201 -----DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
D+ N ++ Y K ++ A ++F+E+P ++VV+WNAMISG G ++AL+
Sbjct: 242 IDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDT 301
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
F M+ G +PD+VT++ +L +CA+LG LE+GK VH + +A GNAL+DMYA
Sbjct: 302 FRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVH-AYMRRNHILADKFVGNALLDMYA 360
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
KCGSI+ A VF M+ RDV +++ +I GLA HG A + +F EM R+ + P E+TF+G
Sbjct: 361 KCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLG 420
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------- 410
+L+ACSH G V EGKKYF M D+Y + P HYG
Sbjct: 421 LLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIR 480
Query: 411 --------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
+HG+V++G ++L + DE G Y+L++N+Y+S W K+R
Sbjct: 481 PDVFACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIR 540
Query: 457 KLMDDSDIKKQPGCSLIEAD 476
K M + ++K PGCSLIE D
Sbjct: 541 KTMKNKKMRKTPGCSLIEVD 560
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 180/548 (32%), Positives = 265/548 (48%), Gaps = 91/548 (16%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGA----INYAHKMFVKI- 65
L +C++LR KQIQ + D EL + V G Y+ + I
Sbjct: 12 LISRCSSLRVFKQIQTQLISRDILRD-----ELFINKVVTFLGKSADFATYSSVILHSIR 66
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+ +F YNT++ A P +F+Y P+ FTF V KAC + G
Sbjct: 67 SVLSSFSYNTLLSSYAVCDKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGK 126
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG + K GF + +V+NSL++F+ CG+ A +FD DVV+W+ + G+ R G
Sbjct: 127 QIHGTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTG 186
Query: 186 ELSMARSLFDEMPVR------------------------------------DLVSWNVMI 209
A F +M V L + N +I
Sbjct: 187 LYKEALDTFSKMDVEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLETGNALI 246
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDD 268
Y K ++ A +F E+ K+D VSWN+MISG V C + +A+E+F M+ S G +PD
Sbjct: 247 DMYVKCEQLSDAMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDG 306
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVF 327
+ S+L+ACA LG ++ G+ VH +L ++G+ H G A++DMYAKCG IE A+++F
Sbjct: 307 HILTSVLSACASLGAVDYGRWVHEYVL--SAGIKWDTHIGTAIVDMYAKCGYIETALKIF 364
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
G+R ++V TW+ L+GGLA HG ES+ F EM +L +P +TF+ +L AC H G V+
Sbjct: 365 NGIRRKNVFTWNALLGGLAIHGHGHESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVD 424
Query: 388 EGKKYFKLMRD-EYNIEPNIRHYG-----------------------VHGDV-------- 415
EG++YF M+ EYN+ P + HYG V DV
Sbjct: 425 EGRRYFHKMKTREYNLSPKLEHYGCLIDLFCRAGLLDEALELIKAMPVKPDVRICGAVLS 484
Query: 416 ---------ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
EL + L M ++SG YVLLSNI+A+ W+ V ++R+LM I K
Sbjct: 485 ACKSRGTLMELPKEILDSFLEMEFEDSGVYVLLSNIFAANRRWDDVSRIRRLMKVKGISK 544
Query: 467 QPGCSLIE 474
PG S IE
Sbjct: 545 VPGSSSIE 552
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 159/446 (35%), Positives = 243/446 (54%), Gaps = 75/446 (16%)
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+IRG +QS+ P V LY +M + +PN+FT+SF++ C R G VHG++V G
Sbjct: 1 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
+ N FVR SL+ +A G +DG K AR +FD
Sbjct: 61 YCTNVFVRTSLVNLYAIAGG-------YDGVRK---------------------ARRVFD 92
Query: 196 EMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
E+ R++VSWN ++ GY + G+++ A +F+E+P+R+VVSW MI+G G KQAL +
Sbjct: 93 EIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHL 152
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD-MTSGVAKVLHG--NALID 312
F EMR G + D V +++ L+ACA+LGDL++G +H + + + +G +L N+LI
Sbjct: 153 FHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIH 212
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV---RPT 369
MYA CG I++A +VF+GM+ R +W+++I G A G AEE++ +F+ MQRL RP
Sbjct: 213 MYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPD 272
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
ITF+GVL ACSHAG V++G+ +F+ M ++ I P I HYG
Sbjct: 273 GITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLI 332
Query: 411 --------------------VHGDVELG-RLANKRLLNMRKDESGDY-VLLSNIYASRGE 448
+H + EL +A K L ++ D++ Y VLLSN+YA+
Sbjct: 333 ESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKR 392
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIE 474
W V VR+ M + ++K G S ++
Sbjct: 393 WQDVALVRQKMVEIGVRKPAGRSWVQ 418
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 23/244 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A ++F ++ E + + T+I G AQ A+ L+ +M + +K ++ L
Sbjct: 113 GDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAAL 172
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNR----FVRNSLIYFHANCGDLNTASVLFDGDAK 168
AC L +G +H I + N+ + NSLI+ +A+CG ++ A +F G +
Sbjct: 173 SACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQ 232
Query: 169 MDVVAWSSLTAGYARRGELSMARSLF--------DEMPVRDLVSWNVMI----TGYAKQG 216
++W+S+ G+A++G A +F DE + V+ G+ QG
Sbjct: 233 RSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQG 292
Query: 217 E--MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
E N+ + VP+ + + M+ G +A + E M +P+D +L
Sbjct: 293 RHFFECMNKKWGIVPR--IEHYGCMVDLLSRAGFLDEAHRLIESMPM---KPNDAVWGAL 347
Query: 275 LTAC 278
L C
Sbjct: 348 LGGC 351
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/458 (33%), Positives = 244/458 (53%), Gaps = 70/458 (15%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A+++F ++ PD +N +I G A+ + ++A+ +M +KP++FT +L C R
Sbjct: 181 AYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGR 240
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L +G VH I + G L +S L +A +D+
Sbjct: 241 LGDAQLGKSVHAWIERRG--------------------LIKSSNLILNNALLDM------ 274
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
Y + EL +A+S+F+ + +D +SWN MI GYAK G +E A+ F ++P RD+VSWN
Sbjct: 275 ---YVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWN 331
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
++I+GY G +FE M + PD VT+++L++A A++G L G+ +H ++ M
Sbjct: 332 SIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRM 391
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
+ L G+A IDMY KCGSI+RA VF + ++DV+ W+T+I G AFHG+ +++ +
Sbjct: 392 QMKIDAFL-GSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQL 450
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------- 410
F EMQ V P ++TFV VL ACSH+G V +G + F M++ Y IEP + HYG
Sbjct: 451 FYEMQEY-VMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLG 509
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
+G++E+ +A K LL + ++ G YVL
Sbjct: 510 RSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVL 569
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
LSNIYA+ G W +K+R++M+ +KK GCS + D
Sbjct: 570 LSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVD 607
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 155/361 (42%), Gaps = 73/361 (20%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
+H + L +KC+ KQI A + + + LI ++ P ++ A +F
Sbjct: 31 KHATLILLEKCSTRDHFKQILAQIMRINLIGQTFPMSRLILFSAITHPENLDMAVLLFRH 90
Query: 65 IT-EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
T P+ ++YNT+I + S N + Y + I PN+ TF F+L+A ++ L + M
Sbjct: 91 HTPHPNLYIYNTMISALSLSLN--QSFAFYNSLLSSCIYPNRSTFLFLLQA-SKFLSQVM 147
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
H I G + +++N+L+ Y
Sbjct: 148 QIHCHAIIT--GSFYYGYLQNTLMKI-------------------------------YLE 174
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
++ +A +F +M D VS+N+MI GYAK+G
Sbjct: 175 NEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGH-------------------------- 208
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
N +AL+ EM +G +PD+ TML LL C LGD ++GK VH + G+ K
Sbjct: 209 -----NIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWI--ERRGLIK 261
Query: 304 ---VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
++ NAL+DMY KC + A +F + +D +W+T+I G A G E + F +
Sbjct: 262 SSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFED 321
Query: 361 M 361
M
Sbjct: 322 M 322
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 130/285 (45%), Gaps = 15/285 (5%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
++ KC LR + I ++ D+ + +I + V G + AH F + D
Sbjct: 274 MYVKCKELRIAQSIFNVIV----RKDTISWNTMIAGYAKV--GNLEIAHNFFEDMPCRDL 327
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+N+II G AQ + L L+ M +I P+ T ++ A + + G +HG
Sbjct: 328 VSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGW 387
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+V+ + + F+ ++ I + CG + A ++F + DV W+++ G+A G S A
Sbjct: 388 VVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKA 447
Query: 191 RSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
LF EM + + V++ ++T + G + + +FN + +R + G ++
Sbjct: 448 LQLFYEMQEYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDL 507
Query: 248 MNKQALEMFEEMRSVGE----RPDDVTMLSLLTACADLGDLEVGK 288
+ + F E++ V E +P ++L+AC G++E+ +
Sbjct: 508 LGRSG--RFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAE 550
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 7/185 (3%)
Query: 207 VMITGYAKQGEMEKANELF-NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
++ + ++ A LF + P ++ +N MIS L +N Q+ + + S
Sbjct: 70 ILFSAITHPENLDMAVLLFRHHTPHPNLYIYNTMISALSL-SLN-QSFAFYNSLLSSCIY 127
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
P+ T L LL A L + ++HC + S L N L+ +Y + + A +
Sbjct: 128 PNRSTFLFLLQASKFLSQV---MQIHCHAIITGSFYYGYLQ-NTLMKIYLENEKMGLAYQ 183
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VF M D +++ +I G A G E++ EM L ++P E T +G+L+ C G
Sbjct: 184 VFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGD 243
Query: 386 VEEGK 390
+ GK
Sbjct: 244 AQLGK 248
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/484 (32%), Positives = 251/484 (51%), Gaps = 75/484 (15%)
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I+ NP A+ Y +M++ + FTF +LKA + L +GF +HG+ +
Sbjct: 22 WNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAM 81
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K GF + FV +L+ ++ G ++ A+ +F+ DVV W+S+ A YA G++ A
Sbjct: 82 KTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMK 141
Query: 193 LFDEMPVRDLVSWNVMITGYAK-------------------------------QGEMEKA 221
LFD MP++DL S+N+MI+GYAK G+M A
Sbjct: 142 LFDNMPLKDLASFNIMISGYAKIGKKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNA 201
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
LF+ +PK++V++WN MISGY+ + +A+++F+EM++ D +T+ +L+ACA L
Sbjct: 202 RNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHL 261
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
G L G ++H D +A H +LIDMYAKCG+I+R++EVF + +D+ W+
Sbjct: 262 GWLGKGTEMHVYAQDHR--LASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNA 319
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
+I GLA HG+ ++ + +M+ VRP EITF+G+L ACSH V+EG + F M E+
Sbjct: 320 IISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEF 379
Query: 401 NIEPNIRHYG---------------------------------------VHGDVELG-RL 420
+ P + HYG +H D+E G ++
Sbjct: 380 GLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETGEKV 439
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
N G++++ N+YAS G+W + R+ M++S I K G S IE D K F
Sbjct: 440 INLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTIEVDGK-F 498
Query: 481 LQYL 484
++L
Sbjct: 499 YRFL 502
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 129/282 (45%), Gaps = 17/282 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F + + + +NT+I G +Q +AV L+ +M+ + + + T + VL
Sbjct: 196 GDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVL 255
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L + G +H + + V SLI +A CG + + +F D+
Sbjct: 256 SACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIY 315
Query: 173 AWSSLTAGYARRGELSMARSLFDEM---PVR-DLVSWNVMITGYAKQGEMEKANELFNEV 228
W+++ +G A G A L D+M VR D +++ +++ + + +++ LF+ +
Sbjct: 316 CWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCM 375
Query: 229 PKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
K + + M+ G A F+ ++++ P + + +LL AC D
Sbjct: 376 EKEFGLPPKLEHYGCMVDLLGRAGFLDPA---FQLIKAMPFEPGESILGALLGACVIHQD 432
Query: 284 LEVGKKVHCTLLDMTSGVAKVLHGNAL--IDMYAKCGSIERA 323
LE G+KV + +TS V G + +++YA CG + A
Sbjct: 433 LETGEKV---INLITSKAHHVSDGEFMMFVNLYASCGQWKEA 471
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 175/580 (30%), Positives = 274/580 (47%), Gaps = 113/580 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L K C ++ LKQIQA + G D L +L+ G NYA+++F I +P
Sbjct: 14 LLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPSL 73
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F+YN +I+ +S + A+ L+ Q+ + + P+ +T+ +VLK + G VH
Sbjct: 74 FIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAF 133
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+VK G EF+ +V NS + +A G + + +F+ D V+W+ + +GY R A
Sbjct: 134 VVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEA 193
Query: 191 RSLF-------DEMP--------------VRDL------------------VSWNVMITG 211
++ +E P +R+L + N ++
Sbjct: 194 VDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGNALLDM 253
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE-------------- 257
Y K G + A E+F+ + ++V W +M++GYV+CG QA +FE
Sbjct: 254 YCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMI 313
Query: 258 -----------------EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
EM+ G +PD +++LLT CA G LE GK +H +D
Sbjct: 314 NGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIH-NYIDENRI 372
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ G ALI+MYAKCG IE++ E+F G++++D ++W+++I GLA +G E++ +F+
Sbjct: 373 KVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKA 432
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
MQ ++P +ITFV VL ACSHAG VEEG+K F M Y+IEPN+ HYG
Sbjct: 433 MQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAG 492
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
+G++++G L ++ +S + L
Sbjct: 493 LLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTL 552
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
L++IYAS W V KVR M D IKK PG S IE D K
Sbjct: 553 LASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDGK 592
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 173/553 (31%), Positives = 272/553 (49%), Gaps = 119/553 (21%)
Query: 36 DSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLY 93
D S++ E+I Y+ S P ++ AH +F +I P ++N +I G ++S P DA+ Y
Sbjct: 4 DPSSISEVIKHYALS---PQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFY 60
Query: 94 TQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC 153
M I+ + TF F+ K+C R+ G V +K GFE FV N+LI+ +
Sbjct: 61 NTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCF 120
Query: 154 GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP--------------- 198
G+L A +FDG + DVV+W+S+ GY + LF EM
Sbjct: 121 GELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAI 180
Query: 199 ------------------------VRDLVSWNVMITGYAKQGEME--------------- 219
V DL N +I Y ++G ++
Sbjct: 181 SATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIV 240
Query: 220 ----------------KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
A +LFNE+P RDV+SW +MI GY L + +A+++F+EM
Sbjct: 241 SWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSM 300
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTL--LDMTSGVAKVLHGNALIDMYAKCGSIE 321
+PD++T+ + L+ACA LG L+ G+ VH + D+ S V GN+LIDMY KCG +E
Sbjct: 301 VKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKS---DVFVGNSLIDMYCKCGVVE 357
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
+A++VF M+ RD +W+++I GLA +GFAE ++ +F +M + + PT TFVGVL+AC+
Sbjct: 358 KALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACA 417
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------- 410
H G V++G ++FK M + Y + P ++HYG
Sbjct: 418 HVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIW 477
Query: 411 --------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462
+HG++ L + +K+LL + +G+YVL S+ YA W+ V K+RKLM+ +
Sbjct: 478 RILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVT 537
Query: 463 DIKKQPGCSLIEA 475
+++K S IE
Sbjct: 538 NLQKPCAYSSIEV 550
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 175/539 (32%), Positives = 274/539 (50%), Gaps = 86/539 (15%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGA------INYAHKMFVKITEPDT 70
++ TL QI A + + +S+ + L + + + + A IN+A + F DT
Sbjct: 29 SIPTLLQIHAFILRHSLHSNLNLLTAFVTTCASLAASAKRPLAIINHARRFFNATHTRDT 88
Query: 71 FMYNTIIRG---SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
F+ N++I + Q P +F + + P+ +TF+ ++K C + G +
Sbjct: 89 FLCNSMIAAHFAARQFSQPF-TLFRDLRRQAPPFTPDGYTFTALVKGCATRVATGEGTLL 147
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG ++K G F+ +V +L+ + G L +A +FD + V+W+++ GYAR G++
Sbjct: 148 HGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDM 207
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW----------- 236
S AR LFDEM RD+V++N MI GY K G + A ELFNE+ +R+VVSW
Sbjct: 208 SEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNG 267
Query: 237 --------------------NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
NAMI GY + ALE+F EM++ P++VT++ +L
Sbjct: 268 DVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLP 327
Query: 277 ACADLGDLEVGKKVH-CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
A ADLG L++G+ +H L A++ G ALIDMYAKCG I +A F GM +R+
Sbjct: 328 AVADLGALDLGRWIHRFALRKKLDRSARI--GTALIDMYAKCGEITKAKLAFEGMTERET 385
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
++W+ LI G A +G A+E++ +F M P E+T +GVL AC+H G VEEG+++F
Sbjct: 386 ASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNA 445
Query: 396 MRDEYNIEPNIRHYGVHGDVELGRL----------------AN----------------- 422
M + + I P + HYG D+ LGR AN
Sbjct: 446 M-ERFGIAPQVEHYGCMVDL-LGRAGCLDEAENLIQTMPYDANGIILSSFLFACGYFNDV 503
Query: 423 -------KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
K ++ M +D +G+YV+L N+YA+R W VE V+++M K+ CS+IE
Sbjct: 504 LRAERVLKEVVKMDEDVAGNYVMLRNLYATRQRWTDVEDVKQMMKKRGTSKEVACSVIE 562
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 237/462 (51%), Gaps = 75/462 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++ YA +F +I P TF N+IIRG P A+ Y M + P++FTF +
Sbjct: 26 GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
K+C L G +H K GF + +++N+L+ ++NCG L +A
Sbjct: 86 KSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSA------------- 129
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP-KR 231
R +FD+M + +VSW MI YA+ +A +LF +
Sbjct: 130 ------------------RKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIAS 171
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
++ WN MI+G+V ++AL +F EM+ G + D VTM SLL AC LG LE+GK +H
Sbjct: 172 NLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLH 231
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
++ V G AL+DMYAKCGSIE A+ VF M ++DV TW+ LI GLA G
Sbjct: 232 -VYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQG 290
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
+++ +F EMQ +V+P ITFVGVL ACSHAG V EG YF M ++Y I+P+I HYG
Sbjct: 291 LKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGC 350
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+HG++ + A ++L+ +
Sbjct: 351 MVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKN 410
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
G YVLLSNIY+S W +K+R+LM + +IKK PGCS IE
Sbjct: 411 GGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIE 452
>gi|357480561|ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511621|gb|AES92763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 598
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 179/547 (32%), Positives = 275/547 (50%), Gaps = 87/547 (15%)
Query: 17 NLRTLKQIQAL----VTINGFNS--DSSALRELIYSGSVVIPGAINYAHKMFVKITE-PD 69
N+ LKQI AL + N + D R L +S + YAHK+F + +
Sbjct: 22 NISHLKQIHALFLKHLPQNAPHHFFDRLLFRVLHFSAE---KSNLYYAHKLFDTMPNCSN 78
Query: 70 TFMYNTIIRGSAQSQNPL-DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
F++ ++IR + + M + I P+ FTFS VL AC R+ G VH
Sbjct: 79 CFIWTSLIRAFLSHHTHFRHCISTFAIMHQKGILPSGFTFSSVLNACGRVPAVFEGKQVH 138
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
++V+ GF N+ V+ +L+ +A CG + A +FDG DVVAW+++ GYA+ G +
Sbjct: 139 ARLVQSGFLGNKIVQTALLDMYAKCGYVCDARDVFDGMVDRDVVAWTAMICGYAKAGRMV 198
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY----- 243
AR LFD M R+ +W M+ GYA G+M+ A EL++ + ++ V+W AMI+GY
Sbjct: 199 DARLLFDNMGERNSFTWTTMVAGYANYGDMKAAMELYDVMNGKEEVTWVAMIAGYGKLGN 258
Query: 244 -----------------------VLC----GMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
+ C G ++A+EM+E+MR + DV M+ ++
Sbjct: 259 VSEARRIFDEIPVPLNPSTCAALLACYAQNGHAREAIEMYEKMRRAKIKVTDVAMVGAIS 318
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLH--GNALIDMYAKCGSIERAIEVFLGMRDRD 334
ACA L D+ + + D+ G + H NALI M +KCG+I+ A F MR+RD
Sbjct: 319 ACAQLRDIRMSNLL---TYDIEEGFCEKTHIVSNALIHMQSKCGNIDLAWREFNIMRNRD 375
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK 394
+ T+S +I A HG ++++I +F +MQ+ + P ++TFVGVL ACS +G +EEG ++F+
Sbjct: 376 LYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLTPNQVTFVGVLNACSTSGLIEEGCRFFQ 435
Query: 395 LMRDEYNIEPNIRHYG---------------------------------------VHGDV 415
+M Y IEP HY V+G+V
Sbjct: 436 IMTGVYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADATTWGSLLAACRVYGNV 495
Query: 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
ELG +A + L + +SG+YVLL+N YAS +W R E+V+KLM +KK G S I+
Sbjct: 496 ELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWERAEEVKKLMSKKGMKKPSGYSWIQR 555
Query: 476 DDKAFLQ 482
+ K Q
Sbjct: 556 ETKGQYQ 562
>gi|147784564|emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
Length = 1302
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 159/508 (31%), Positives = 264/508 (51%), Gaps = 77/508 (15%)
Query: 47 GSVVIPGAINY-AHKMFVKITEPDTFMY------------NTIIRGSAQSQNPLDAVFLY 93
G +V+ G +++ K ++ E D+F+Y N +I+ NP A+ Y
Sbjct: 787 GKLVLAGGLDFKVVKEVLEKVEDDSFLYSLSSVDSGLQRWNRVIKRRVSQGNPDQAILAY 846
Query: 94 TQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC 153
+M++ + FTF +LKA + L +GF +HG+ +K GF + FV +L+ +
Sbjct: 847 VEMKRVGFHADNFTFPVLLKAASSLSSCCIGFALHGQAMKTGFSGHCFVGTALLDMYXAF 906
Query: 154 GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYA 213
G ++ A+ +F+ DVV W+S+ A YA G++ A LFD MP++DL S+N+MI+GYA
Sbjct: 907 GAIDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDNAMKLFDNMPLKDLASFNIMISGYA 966
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG------------MNKQALEMFEEMRS 261
K G A +F+ + +D+VSWN+MI G K A+++F+EM++
Sbjct: 967 KIGRKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNAVDLFDEMKA 1026
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSI 320
D +T+ +L+ACA LG L G ++H D +A H +LIDMYAKCG+I
Sbjct: 1027 GNHEADHLTVALVLSACAHLGWLGKGTEMHVYAQDHR--LASSPHVATSLIDMYAKCGTI 1084
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+R++EVF + +D+ W+ +I GLA HG+ ++ + +M+ +RP EITF+G+L AC
Sbjct: 1085 QRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGIRPDEITFIGLLSAC 1144
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
SH V+EG + F M E+ + P + HYG
Sbjct: 1145 SHGSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESI 1204
Query: 411 ---------VHGDVELGRLANKRLLNMRKDES-----GDYVLLSNIYASRGEWNRVEKVR 456
+H D+E G ++++B+ ++ G++++ N+YAS G+W + R
Sbjct: 1205 LGALLGACVIHQDLETG----EKVIBLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWR 1260
Query: 457 KLMDDSDIKKQPGCSLIEADDKAFLQYL 484
+ M++S I K G S IE D K F ++L
Sbjct: 1261 ERMNESGIAKTAGGSTIEVDGK-FYRFL 1287
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 183/576 (31%), Positives = 284/576 (49%), Gaps = 106/576 (18%)
Query: 2 RTNRHRSSRLW----KKCTNL-------RTLKQIQALVTINGFNSDSSALRELIYSGS-- 48
R N+ +S LW +KC +L L QI A + N ++ + + I + S
Sbjct: 140 RGNQQQS--LWSPIERKCLSLLQQSKTRANLLQIHAFMLRNALETNPNLFTKFIATCSSI 197
Query: 49 -VVIP-----GAINYAHKMF-VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CS 100
++ P I +A +MF + D F+ N++I+ + ++ LY + + S
Sbjct: 198 ALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTS 257
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
P+ FTFS + K+C + G +H +V GF + + +L+ +A G ++ A
Sbjct: 258 FTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCAR 317
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELS-------------------------------M 189
LFD V+W++L GY R G++
Sbjct: 318 KLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCS 377
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
AR LFDEMP R +VSW +MI GY+ G ++ A LF+ +P++++ SWNAMISGY
Sbjct: 378 ARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQP 437
Query: 250 KQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKV 304
+AL++F EM+S PD+VT++S+L A ADLG L++G VH + LD + V
Sbjct: 438 YEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNV--- 494
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
G ALIDMYAKCG I ++ VF M +++ ++W+ LI A +G A+E++ +F EM
Sbjct: 495 --GTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHK 552
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRL---- 420
P EIT +GVL AC+H+G VEEGK++FK M +E+ + P I HYG D+ LGR
Sbjct: 553 GFMPNEITMIGVLSACNHSGLVEEGKRWFKAM-EEFGLTPKIEHYGCMVDL-LGRAGCLQ 610
Query: 421 ------------AN------------------------KRLLNMRKDESGDYVLLSNIYA 444
AN K + M G+Y++L N+YA
Sbjct: 611 EAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYA 670
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
+ W ++V+ LM + +KK+ GCS IE D + +
Sbjct: 671 NEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVW 706
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 162/521 (31%), Positives = 283/521 (54%), Gaps = 83/521 (15%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKM 61
+N+ S + K CT +R L+Q A + +G +S +A R L + S + G ++YA+ +
Sbjct: 22 SNQPYLSMVDKYCTTMRDLQQFHAHLIKSGQAIESFAASRILAFCASPL--GNMDYAYLV 79
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLY 120
F+++ P+ F +NT+IRG +QS NP A++L+ M S ++P + T+ + KA ++L
Sbjct: 80 FLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGL 139
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+ G +HG+I+K G +F+ F+RN+++Y +A G L+ A +F+ + + DVV+W+S+ G
Sbjct: 140 AHDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILG 199
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
A+ GE+ +R LFD+MPV++ +SWN MI GY +
Sbjct: 200 LAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRN------------------------- 234
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LD 296
GM K+AL++F +M+ +P + TM+SLL A A +G L G +H + L
Sbjct: 235 ------GMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQ 288
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ + V A+IDMY KCGSI A++VF + R +S+W+++I GLA +G +E+I
Sbjct: 289 LNAIVV-----TAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEAIL 343
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
+F+ ++ ++P I+F+ VL AC+H V+EG ++F M++ Y IEP+I+HY
Sbjct: 344 VFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKHYNLMVDMI 403
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
++G+ E+ + A +++ + +E+ YV
Sbjct: 404 SRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGNTEMAKRAAEKVNELDPEETMGYV 463
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
L++NI+A + + R M ++K+PG S IE D++
Sbjct: 464 LMANIHAWGNNFVGAMEKRVAMRMKKVEKEPGGSFIEVDEE 504
>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 254/490 (51%), Gaps = 84/490 (17%)
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
++P+ ++ +I G AQ+ +A+ L +M+ +PN T + VL AC RL N+G
Sbjct: 7 SKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGK 66
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG + ++GF N FV N L+ + C D+ +A +F G + +VV+++++ GY G
Sbjct: 67 EIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENG 126
Query: 186 ELSMARSLFDEMPV--RDLVSWNVMITGYA----KQGEMEKANELFNEVPKRDVVSWNAM 239
+ A+ LFD+M + +D +SWN MI+GYA K +++ A F+ V +RD +WN +
Sbjct: 127 NVEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVL 186
Query: 240 ISGYVLC-----------------------------------GMNKQALEMFEEMRSVGE 264
ISGY C G N+ AL +F EM++
Sbjct: 187 ISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSL 246
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERA 323
RPD T+ +L ACA L + GK+VH + G +H G AL+DMYAKCGSI+ A
Sbjct: 247 RPDIYTVGIILPACARLATIARGKQVHAH--SIRQGYELDVHIGAALVDMYAKCGSIKHA 304
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
++V+ + + ++ + + ++ A HG +E IA+FR M RP +TF+ VL +C HA
Sbjct: 305 MQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHA 364
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G VE G ++F LM YN+ P+++HY
Sbjct: 365 GAVETGHEFFDLMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGA 423
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
+ G+VELG +A + L+ + + +G+YVLL+N+YA G W+ +++ R+++ D +
Sbjct: 424 LLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGM 483
Query: 465 KKQPGCSLIE 474
K PGCS IE
Sbjct: 484 HKSPGCSWIE 493
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 136/292 (46%), Gaps = 13/292 (4%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV---IPGAINYAHKMFVKITEPDT 70
KC +L+ A + +G +A ++ SG + N KM EP+
Sbjct: 161 KCEDLKA-----AQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNV 215
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+ +N II G ++ + A+ L+T+M+ S++P+ +T +L AC RL G VH
Sbjct: 216 YTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAH 275
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++ G+E + + +L+ +A CG + A +++ + ++V+ +++ YA G
Sbjct: 276 SIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEG 335
Query: 191 RSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV-L 245
+LF M D V++ +++ G +E +E F+ + +V + V L
Sbjct: 336 IALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDL 395
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
+ E +E ++ + +PD V +LL C G++E+G+ +L+++
Sbjct: 396 LSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIEL 447
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 83/137 (60%), Gaps = 1/137 (0%)
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+E K ++VSW+A+I G+ G +K+ALE+ M++ G P+ T+ S+L ACA L +L
Sbjct: 4 SENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLN 63
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
+GK++H + ++ N L+D+Y +C + A+++F G ++V +++T+I G
Sbjct: 64 LGKEIH-GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGY 122
Query: 346 AFHGFAEESIAMFREMQ 362
+G E++ +F +M+
Sbjct: 123 CENGNVEKAKELFDQME 139
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 129/286 (45%), Gaps = 49/286 (17%)
Query: 166 DAKMDVVAWSSLTAGYARRG------EL----------SMARSLFDEMPV---------- 199
++K ++V+WS++ G+A+ G EL AR+L +P
Sbjct: 6 NSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLG 65
Query: 200 RDLVSW-------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+++ + N ++ Y + +M A ++F+ ++VVS+N MI GY
Sbjct: 66 KEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCEN 125
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD-LGDLEVGKKVHCTLLDMTSGVAKVL 305
G ++A E+F++M VG+ D ++ S+++ AD L E K +T
Sbjct: 126 GNVEKAKELFDQMELVGK--DTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATW 183
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMR----DRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
N LI YA C +E + M+ + +V TW+ +I G +G E ++ +F EM
Sbjct: 184 --NVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEM 241
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIEPNI 406
Q +RP T +L AC+ + GK+ + +R Y ++ +I
Sbjct: 242 QTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHI 287
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 162/495 (32%), Positives = 257/495 (51%), Gaps = 73/495 (14%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
+KQI + G S LR + V G A ++F ++++ + YNT+I G
Sbjct: 146 VKQIHCHALVFGLLSKEEYLRNSLIK-RYVDNGCFECARQLFDEMSDRNVVSYNTMILGF 204
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
A+ N L + L+ M ++P+ FT +L C +L +G VH +I K N
Sbjct: 205 AKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNL 264
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
+ N+L+ + C +L A +FDG + D V+W+++ AGYA+ GEL +A LF+++P R
Sbjct: 265 ILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTR 324
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D+VSWN +I+GYA+ G+ LF MF E
Sbjct: 325 DIVSWNSLISGYAQNGDYVTVKCLFT---------------------------RMFAE-- 355
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
+PD VT+++L++A A++G L+ G+ +H + M + + + G+ALIDMY KCGSI
Sbjct: 356 --NVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKI-EAFSGSALIDMYCKCGSI 412
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
ERA +F + ++DV+TW+T+I G AFHGF +++ +F MQ + +P ++TFV VL AC
Sbjct: 413 ERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQA-ETKPNDVTFVSVLAAC 471
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
SH+G V+EG K F M+ Y+IEP + HYG
Sbjct: 472 SHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSI 531
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+H ++EL A LL + ++ G Y+LLSN+YA+ G W+ + +R++M+
Sbjct: 532 WGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNS 591
Query: 462 SDIKKQPGCSLIEAD 476
+KK GCS + D
Sbjct: 592 RGVKKIAGCSSVAVD 606
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 223/396 (56%), Gaps = 42/396 (10%)
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
N F +++ H C D+ +A LFD + DVV W+ + +GY G++ AR LFD MP
Sbjct: 24 NVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGDMVAARELFDRMP 83
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
D++SWN +++GYA GE+E ++F E+P R+V SWN +I GYV G+ K+ALE F+
Sbjct: 84 DCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKR 143
Query: 259 MRSVGER-PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
M G P+D T++++L+AC+ LGDLE+GK VH D + GNALIDMYAKC
Sbjct: 144 MLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVH-VYADSIGYKGNLFVGNALIDMYAKC 202
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
G IE+A++VF G+ +D+ TW+T+I LA H A +++++F M+R RP +TFVG+L
Sbjct: 203 GVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGIL 262
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGD----------------------- 414
AC+H G V G +F+ M D+Y I P I HYG D
Sbjct: 263 SACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPD 322
Query: 415 ----------------VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
VE+ LA +RL+ + + G++V+LSNIY G V +++
Sbjct: 323 VVIWAALLGACRXYKNVEMAELALQRLIELEPNNPGNFVMLSNIYKDLGRSQDVARLKVA 382
Query: 459 MDDSDIKKQPGCSLIEADDKAFLQYLFNLK-PKPNS 493
M D+ +K PGCS+I +D Y + + P+ +S
Sbjct: 383 MRDTGFRKVPGCSVIGCNDSVVEFYSLDERHPETDS 418
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 43/213 (20%)
Query: 181 YARRGELSMARS--LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
Y+ RG + +A + +F EM +++ +W ++ + +M A LF+ P+ DVV WN
Sbjct: 2 YSLRGGVFVADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNV 61
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
++SGY+ G A E+F+ M PD
Sbjct: 62 IVSGYIELGDMVAARELFDRM------PD------------------------------- 84
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
V+ N ++ YA G +E ++VF M R+V +W+ LIGG +G +E++ F
Sbjct: 85 ---CDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECF 141
Query: 359 REM-QRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ M V P + T V VL ACS G +E GK
Sbjct: 142 KRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGK 174
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 176/393 (44%), Gaps = 45/393 (11%)
Query: 28 VTINGFN--SDSSALREL--------IYSGSVVIPGAINYAH-KMFVKITEP----DTFM 72
V ++G+ D A REL + S + V+ G N ++FVK+ E + +
Sbjct: 61 VIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYS 120
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+N +I G ++ +A+ + +M + PN +T VL AC+RL +G VH
Sbjct: 121 WNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYA 180
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
G++ N FV N+LI +A CG + A +FDG D++ W+++ A + A
Sbjct: 181 DSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADAL 240
Query: 192 SLFDEMPVR----DLVSWNVMIT-----GYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
SLF+ M D V++ +++ G + G + + + + + + + M+
Sbjct: 241 SLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDL 300
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
G+ QA+++ +R + PD V +LL AC ++E+ + L+++
Sbjct: 301 LGRAGLINQAVDI---VRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIELEPNNP 357
Query: 303 KVLHGN--ALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGG----LAFHGFAE- 352
GN L ++Y G + + + MRD R V S +IG + F+ E
Sbjct: 358 ----GNFVMLSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCS-VIGCNDSVVEFYSLDER 412
Query: 353 --ESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
E+ +++R +Q L + +V LV +HA
Sbjct: 413 HPETDSIYRALQGLTILLRSHGYVPNLVDVAHA 445
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 164/514 (31%), Positives = 260/514 (50%), Gaps = 86/514 (16%)
Query: 48 SVVIPGAINYAHKMFVKI-------TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS 100
S+++ IN+++ I T +TF+YNT+IRG +AV LY M K +
Sbjct: 40 SIILRSTINFSNNAQYPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAA 99
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
I P+ FTFSFVLKAC RL ++G +H + K GF+ + FV+ +++ F++ CG L A
Sbjct: 100 IVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAW 159
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM-----------PVRDL------- 202
+FD +VV+W+ + G G+ A LF + VR L
Sbjct: 160 KVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLG 219
Query: 203 ----------------VSWNVMITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
+S NV + Y K G ME+A +F+ + ++D+V W+AMI
Sbjct: 220 DLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQ 279
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
GY G+ ++A+E+F EMR V RPD M+ L++CA LG LE+G L++ +
Sbjct: 280 GYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAK-GLMNYEEFL 338
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ + G +LID YAKCGS+E A+ V+ M+++D ++ +I GLA +G + +F +M
Sbjct: 339 SNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQM 398
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
+ + P E TFVG+L C+HAG V++G+ YF M ++++ P I HYG
Sbjct: 399 GKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGF 458
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+H + +L K+L+ + SG YVLLSNI
Sbjct: 459 LDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNI 518
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
Y++ W+ EK+R +++ ++K PG S +E D
Sbjct: 519 YSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVD 552
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 173/405 (42%), Gaps = 51/405 (12%)
Query: 9 SRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFV 63
S + K C L I +LV GF+ D ++ YS G + A K+F
Sbjct: 108 SFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKC----GFLRDAWKVFD 163
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
+ + + +I G + +AV L+ + + ++P+ F VL+AC RL
Sbjct: 164 DMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLES 223
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G + + + G N FV SL+ + CG + A +FDG + D+V WS++ GYA
Sbjct: 224 GRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYAS 283
Query: 184 RGELSMARSLFDEM---PVR-------------------DLVSW---------------- 205
G A LF EM VR +L +W
Sbjct: 284 NGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVL 343
Query: 206 -NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
+I YAK G ME+A ++ + ++D V +NA+ISG + G A +F +M G
Sbjct: 344 GTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGI 403
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
P++ T + LL C G ++ G+ ++ S + H ++D+ A+ G ++ A
Sbjct: 404 PPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAH 463
Query: 325 EVFLGMRDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+ GM + +V W +L+GG H E +A Q +++ P
Sbjct: 464 NLIKGMPMKANVIVWGSLLGGCRLH--RETQLAEHVLKQLIELEP 506
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 162/495 (32%), Positives = 257/495 (51%), Gaps = 73/495 (14%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
+KQI + G S LR + V G A ++F ++++ + YNT+I G
Sbjct: 81 VKQIHCHALVFGLLSKEEYLRNSLIK-RYVDNGCFECARQLFDEMSDRNVVSYNTMILGF 139
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
A+ N L + L+ M ++P+ FT +L C +L +G VH +I K N
Sbjct: 140 AKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNL 199
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
+ N+L+ + C +L A +FDG + D V+W+++ AGYA+ GEL +A LF+++P R
Sbjct: 200 ILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTR 259
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D+VSWN +I+GYA+ G+ LF MF E
Sbjct: 260 DIVSWNSLISGYAQNGDYVTVKCLFT---------------------------RMFAE-- 290
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
+PD VT+++L++A A++G L+ G+ +H + M + + + G+ALIDMY KCGSI
Sbjct: 291 --NVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKI-EAFSGSALIDMYCKCGSI 347
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
ERA +F + ++DV+TW+T+I G AFHGF +++ +F MQ + +P ++TFV VL AC
Sbjct: 348 ERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQA-ETKPNDVTFVSVLAAC 406
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
SH+G V+EG K F M+ Y+IEP + HYG
Sbjct: 407 SHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSI 466
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+H ++EL A LL + ++ G Y+LLSN+YA+ G W+ + +R++M+
Sbjct: 467 WGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNS 526
Query: 462 SDIKKQPGCSLIEAD 476
+KK GCS + D
Sbjct: 527 RGVKKIAGCSSVAVD 541
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 165/493 (33%), Positives = 249/493 (50%), Gaps = 112/493 (22%)
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151
LY + + S +P+ TF F+LKAC RL RN G V G ++ GF + FV N+ ++F A
Sbjct: 108 LYCSLLR-SARPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLA 166
Query: 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF-----------DEMPVR 200
C + A LFDG D+V+W++L GY RRG A +F DE+ +
Sbjct: 167 VCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMI 226
Query: 201 DLVS-----------------------------WNVMITGYAKQGEMEKAN--------- 222
+VS NV++ Y K G++E+A
Sbjct: 227 GVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKK 286
Query: 223 ----------------------ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
++F+E+P+RDV WNA+++GYV C K+AL +F +M+
Sbjct: 287 TIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQ 346
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
PDD+TM++LL+AC+ LG LE+G VH +D V+ G L+DMY+KCG+I
Sbjct: 347 EAMVEPDDITMVNLLSACSQLGALEMGMWVH-HYIDRRRVSLSVMLGTNLVDMYSKCGNI 405
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
E+AI VF + +++ TW+ +I GLA HG A+ +I F+ M L ++P EITF+GVL AC
Sbjct: 406 EKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSAC 465
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
HAG V+EG+++F LM +Y++E ++HY
Sbjct: 466 CHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVV 525
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+HG++ LG A +L+ + +SG YVLL+N+YA + +KVR +M
Sbjct: 526 WGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRH 585
Query: 462 SDIKKQPGCSLIE 474
++K PGCS IE
Sbjct: 586 LGVEKVPGCSCIE 598
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/447 (34%), Positives = 235/447 (52%), Gaps = 81/447 (18%)
Query: 109 SFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168
+ V+ T + + +H +K GFE FV N+LI+ +A CG L A +FDG
Sbjct: 28 ALVVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLD 87
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS-----------------W------ 205
D+V+W++L GY++ + LFD M ++ + W
Sbjct: 88 RDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSM 147
Query: 206 ----------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
N +I Y + G + A +LF+ +PKRDV+SW +MI+GY
Sbjct: 148 VKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQF 207
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGN 308
A+++F+EM + +PD VT+ S+L+ACA LG L+VG VH + GV A + GN
Sbjct: 208 SDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYI--RRHGVQADIYVGN 265
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+LIDMY KCG +E+A+EVF M+D+D +W+++I GLA +GFA ++ +F +M R V+P
Sbjct: 266 SLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQP 325
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
T TFVG+L+AC+HAG V +G +YF+ M + + P ++HYG
Sbjct: 326 THGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEF 385
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+HG+V L +A KRLL + +SG+YVLLSN YA W
Sbjct: 386 IKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRW 445
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ K+R+LM+DSD++K G S IE D
Sbjct: 446 DDAMKMRELMEDSDVQKPSGSSSIEVD 472
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 179/395 (45%), Gaps = 45/395 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + +A KMF + + D +NT+I G +Q + + L+ M +IK + T ++
Sbjct: 73 GQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKII 132
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC+ L + I + E + ++ N+LI + G+L A LFD K DV+
Sbjct: 133 LACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVI 192
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL---------------------VSW------ 205
+W+S+ GY++ + S A LF EM + V W
Sbjct: 193 SWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYI 252
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
N +I Y K G +EKA E+F+ + +D VSW ++ISG + G AL
Sbjct: 253 RRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSAL 312
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
++F +M G +P T + +L ACA G + G + ++ + V + H ++D+
Sbjct: 313 DLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDL 372
Query: 314 YAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
++ G+I++A E M DV W L+ HG +A + L++ P + +
Sbjct: 373 LSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHG--NVVLAEIATKRLLELDPCD-S 429
Query: 373 FVGVLVACSHAG--KVEEGKKYFKLMRDEYNIEPN 405
VL++ ++AG + ++ K +LM D +P+
Sbjct: 430 GNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPS 464
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 128/271 (47%), Gaps = 23/271 (8%)
Query: 44 IYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98
+Y G+ +I G + A K+F + + D + ++I G +Q+ DAV L+ +M
Sbjct: 160 VYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMA 219
Query: 99 CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158
+KP+K T + VL AC L ++G+ VH I ++G + + +V NSLI + CG +
Sbjct: 220 AKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEK 279
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV-----SWNVMITGYA 213
A +F D V+W+S+ +G A G + A LF +M +R+ V ++ ++ A
Sbjct: 280 ALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQM-LREGVQPTHGTFVGILLACA 338
Query: 214 KQGEMEKANELFNE-------VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
G + K E F VP + ++ G +A E ++M V P
Sbjct: 339 HAGLVNKGLEYFESMESVHGLVPAMK--HYGCVVDLLSRSGNIDKAYEFIKKMPIV---P 393
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
D V LL+AC G++ + + LL++
Sbjct: 394 DVVVWRILLSACKLHGNVVLAEIATKRLLEL 424
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 179/543 (32%), Positives = 272/543 (50%), Gaps = 81/543 (14%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF-VKITEPD 69
L ++C +TL QI AL+ N +++ + L + I + + + +A +F + D
Sbjct: 8 LLQRCRTRKTLLQIHALILRNAIDANVNILTKFITTCGQL--SSTRHARHLFDNRSHRGD 65
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
TF+ N++I+ + DA LY + E C + P+ FTF+ + K C + G
Sbjct: 66 TFLCNSMIKSHVVMRQLADAFTLYKDLRRETCFV-PDNFTFTVLAKCCALRMAVWEGLET 124
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG +VK GF F+ +V +L+ +A G+L A +F+ +V+W++L GY RRG++
Sbjct: 125 HGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDM 184
Query: 188 S-------------------------------MARSLFDEMPVRDLVSWNVMITGYAKQG 216
ARSLFDEMP R+++SW MI GY G
Sbjct: 185 GNAWFLFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNG 244
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLL 275
++ A LF+ +P++++VSWNAMI GY +AL++F E++S P++VT++S+L
Sbjct: 245 DVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSIL 304
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
A A LG LE+G+ VH + A V +L+DMY KCG I +A +VF + ++
Sbjct: 305 PAIATLGALELGEWVH-RFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKET 363
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
+TW+ LI G A +G A E++ F EMQ+ ++P +IT GVL ACSH G VEEGK FK
Sbjct: 364 ATWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKA 423
Query: 396 MRDEYNIEPNIRHYGVHGDVELGRL----------------ANKRLL------------- 426
M E + P I HYG D+ LGR AN +L
Sbjct: 424 M-IESGLSPKIEHYGCLVDL-LGRAGCLDEAENLIKSMPFEANGIILSSFSFACGFSNDV 481
Query: 427 -----------NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
NM +G YV++ N+YA W V+++ LM KK+ G S IE
Sbjct: 482 TRAQRVLNQAVNMEPGNNGIYVMMRNLYAMEERWKDVKEINGLMRRRGAKKEVGSSAIEV 541
Query: 476 DDK 478
D +
Sbjct: 542 DSR 544
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 167/533 (31%), Positives = 261/533 (48%), Gaps = 115/533 (21%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQ-MEKCSIKPNKFTFSFVLK 113
+N A+ F++I +P ++N +IRG +QS+NP +A+ +Y+ M I + TF ++ K
Sbjct: 106 LNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFK 165
Query: 114 ACTRLLYRNMGFCVHGKIVKYG-----FEFNRFVR------------------------- 143
AC+R+ G H +++K G F N +R
Sbjct: 166 ACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVS 225
Query: 144 -NSLIYFHANCGDLNTASVLF--------------------------------------- 163
NSLI ++ C LF
Sbjct: 226 WNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIE 285
Query: 164 DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANE 223
D +DV +SL Y RRG + +AR +FD M +++VSWN M+TGYA G++ A +
Sbjct: 286 DKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKK 345
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
LFNE+P R+V+SW MISG AL++F+EM +PD++T+ S+L+AC+ LG
Sbjct: 346 LFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGL 405
Query: 284 LEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
L+ G+ VH + D+ S V GNALIDMY KCG +++A+EVF M+ +D +W+++
Sbjct: 406 LDTGQTVHEYMCRHDIKSDVYV---GNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSM 462
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I GLA +GF + +F +M R ++PT +F+G+L+AC+HAG V++G +YF+ M Y
Sbjct: 463 ILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYG 522
Query: 402 IEPNIRHYG---------------------------------------VHGDVELGRLAN 422
+ P ++HYG +H ++ L +A
Sbjct: 523 LRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIAT 582
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
+LL + SG+YVLLSN YA W+ ++R LM D++K S IE
Sbjct: 583 SKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSSIEV 635
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 9/226 (3%)
Query: 208 MITGYA-KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE-MRSVGER 265
+I YA + + KAN F ++ + ++ +N +I G +A+ M+ + M + G
Sbjct: 95 VIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGIL 154
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
D++T + L AC+ + D+ G+ H +L + G + + N+LI MY G + A +
Sbjct: 155 GDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFG-SYLFIENSLIRMYGYFGELGYAQK 213
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA-- 383
VF M DRD+ +W++LI G + +E + +F M+ V +T V V++ACS+
Sbjct: 214 VFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCE 273
Query: 384 -GKVEEGKKYFK---LMRDEYNIEPNIRHYGVHGDVELGRLANKRL 425
G V+ KY + + D Y I YG G V+L R R+
Sbjct: 274 DGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRM 319
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 113/236 (47%), Gaps = 14/236 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A K+F ++ + + +I G AQ+ DA+ L+ +M ++KP++ T S VL
Sbjct: 338 GDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVL 397
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC+ L + G VH + ++ + + +V N+LI + CG ++ A +F K D V
Sbjct: 398 SACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSV 457
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLV-----SWNVMITGYAKQGEMEKANELFNE 227
+W+S+ G A G + LF +M +RD + S+ ++ G ++K E F
Sbjct: 458 SWTSMILGLAVNGFVDNVFELFSQM-LRDGLQPTHGSFIGILLACTHAGLVDKGLEYFES 516
Query: 228 VP-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+ + ++ + ++ G +A E ++M V PD V LL+AC
Sbjct: 517 MEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVV---PDVVLWRILLSAC 569
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 164/511 (32%), Positives = 258/511 (50%), Gaps = 77/511 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVKITEPD 69
L KKC L LKQI A + + A+ +L+ + + P ++A +F ++ +
Sbjct: 17 LLKKCRALSQLKQIHANLLQSHLPESPFAIGQLLSLAATSNNPSFFSHACLIFQNLSLRN 76
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN--MGFCV 127
FMYN++IRG S +P A+ Y M + N +TF ++KACT L + +G V
Sbjct: 77 IFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLV 136
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H +V +GF+ + FV ++LI F+ S+ FD +
Sbjct: 137 HAHVVTFGFDEDPFVVSALIEFY---------SLNFD----------------------M 165
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
AR+LFD +P RD+V W MI GY K G++E A LF ++P+R+ +SW+A+++ Y G
Sbjct: 166 GTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVG 225
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
K+ L +F M+ G P++ ++S+LTACA LG L G VH +L
Sbjct: 226 DFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPIL-A 284
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
AL+DMY+KCG +E A+ F G+ ++D W+ +I G+A +G A +S+ +F +M +
Sbjct: 285 TALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQ 344
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
PTE TFV VL AC+HA V+EG K F+ M Y +EP + HY
Sbjct: 345 PTETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQLEHYACLVDLMARAGMLAEAEK 404
Query: 411 -------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
+G++E+G K+L +M + G +VL N+Y
Sbjct: 405 FIEEKMGGLGRGDANVWGAMLGACRTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYRE 464
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G ++VR+L+ ++ +KK+PGCS+IE D
Sbjct: 465 AGWDMEAKRVRRLISEAGMKKKPGCSIIEVD 495
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 162/505 (32%), Positives = 260/505 (51%), Gaps = 78/505 (15%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C+++ +KQ +L+ G ++++ A+ + S+ G INYA K+F + PDTF+YN
Sbjct: 12 CSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYN 71
Query: 75 TIIRGS-AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
T+ + + SQ P ++ Y+ M + + PN FTF +++AC +H ++K
Sbjct: 72 TLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACK---LEEEAKQLHAHVLK 128
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+GF + + N+LI+ Y G L AR +
Sbjct: 129 FGFGGDTYALNNLIHV-------------------------------YFAFGSLDDARRV 157
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQA 252
F M ++VSW +++GY++ G +++A +F +P K++ VSWNAMI+ +V ++A
Sbjct: 158 FCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREA 217
Query: 253 LEMFEEMRSVGERP-DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
+F MR + D ++L+AC +G LE G +H ++ T V +I
Sbjct: 218 FALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIH-KYVEKTGIVLDSKLATTII 276
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR-LKVRPTE 370
DMY KCG +++A VF G++ + VS+W+ +IGG A HG E++I +F+EM+ V P
Sbjct: 277 DMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDS 336
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
ITFV VL AC+H+G VEEG YF+ M D + I+P HYG
Sbjct: 337 ITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVID 396
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+HG++ELG R++ + + SG YV+L N+YAS G+W +
Sbjct: 397 EMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQ 456
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEAD 476
V VRKLMDD +KK+PG S+IE +
Sbjct: 457 VAGVRKLMDDRGVKKEPGFSMIEME 481
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 144/357 (40%), Gaps = 65/357 (18%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C KQ+ A V GF D+ AL LI+ G+++ A ++F +++P+
Sbjct: 109 LIRACKLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAF--GSLDDARRVFCTMSDPNV 166
Query: 71 FMYNTIIRGSAQSQNPLDAVFL-------------YTQMEKCSIKPNKFTFSFVLKACTR 117
+ +++ G +Q +D F + M C +K N+F +F
Sbjct: 167 VSWTSLVSGYSQ-WGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFA------ 219
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L+R M V+ E +RFV +++ G L + K +V S L
Sbjct: 220 -LFRRMR-------VEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKL 271
Query: 178 TAG----YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233
Y + G L A +F + V+ + SWN MI G+A G+ E A LF E+ + +
Sbjct: 272 ATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAM 331
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
V+ PD +T +++LTACA G +E G
Sbjct: 332 VA------------------------------PDSITFVNVLTACAHSGLVEEGWYYFRY 361
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM-RDRDVSTWSTLIGGLAFHG 349
++D+ H ++D+ A+ G +E A +V M D + L+G HG
Sbjct: 362 MVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHG 418
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 216/399 (54%), Gaps = 72/399 (18%)
Query: 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165
T+ FV+KAC G VH VK GFE + ++ +SLI+ +AN DL A LF+
Sbjct: 1 MTYPFVIKACNESSVTWFGLLVHTH-VKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNL 59
Query: 166 DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF 225
+ D+V+W+++ GY +RGE+ AR +FD M RD++SWN MI GYA G++++A LF
Sbjct: 60 CSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLF 119
Query: 226 NEVPKR-------------------------------DVVSWNAMISGYVLCGMNKQALE 254
+E+P+R DVVSWN+M++ Y CG +AL
Sbjct: 120 DEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 179
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314
+F++M +VG +P + T++SLL+ACA LG L+ G +H + D V ++ G AL+DMY
Sbjct: 180 LFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIV-GTALVDMY 238
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
AKCG I A +VF M +DV W+T+I G+A G +E+ +F+EM+ V P +ITFV
Sbjct: 239 AKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFV 298
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
+L ACSHAG V+EG+K M Y IEP + HYG
Sbjct: 299 AMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPM 358
Query: 411 ---------------VHGDVELGRLANKRLLNMRKDESG 434
+HG+ ELG + KRL+N++ +SG
Sbjct: 359 EPNPCALGALLGGCRIHGNFELGEMVGKRLINLQPCQSG 397
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 132/281 (46%), Gaps = 25/281 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F ++ D +N+++ AQ P +A+ L+ QM +KP++ T +L
Sbjct: 141 GNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLL 200
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L + G +H I E N V +L+ +A CG ++ A+ +F+ DV+
Sbjct: 201 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 260
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV 228
AW+++ AG A G + A+ LF EM + +++ M++ + G +++ +L + +
Sbjct: 261 AWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 320
Query: 229 -------PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
PK V + +I G+ ++A+E+ M P+ + +LL C
Sbjct: 321 SSSYGIEPK--VEHYGCVIDLLARAGLLEEAMELIGTMPM---EPNPCALGALLGGCRIH 375
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLH---------GNALIDM 313
G+ E+G+ V L+++ + L GN L+DM
Sbjct: 376 GNFELGEMVGKRLINLQPCQSGRLKSAIGXSADTGNXLLDM 416
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/453 (35%), Positives = 239/453 (52%), Gaps = 71/453 (15%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
++ KQI A + +N + L +L+ +V G ++YAH +F +I+ P+ FMYN++I
Sbjct: 1 MKQSKQIHAQIILNNLTDQTLTLGKLVSFCAVSDAGNLDYAHLVFNQISIPNKFMYNSLI 60
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
RG S +P+ ++FLY Q+ + PN+FTF FVLKAC M VHG K GF
Sbjct: 61 RGYCNSNSPIKSMFLYRQLIDSGLSPNEFTFPFVLKACASKSAHWMSMIVHGHAQKLGFA 120
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
V+N LI + CG + A +FD ++ +V+W+S+ GY++ G LF EM
Sbjct: 121 SLICVQNGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEM 180
Query: 198 ---------------------------------------PVRDLVSWNVMITGYAK---- 214
DLV+ N +I YAK
Sbjct: 181 REIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGAL 240
Query: 215 ---------------------------QGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
QG +E A + F+++P+++VVSWN+MIS YV G
Sbjct: 241 VLAERVFQQMPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGG 300
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
++AL++F EM S P++ T+LS+L+AC +GDL +GKK+H + TS + V
Sbjct: 301 QCREALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYICG-TSSMYSVTLC 359
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
N+LIDMYAKCG++ AI+VF M ++++ +W+ +IG LA HG+ E++ +FR+MQ V
Sbjct: 360 NSLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAGVW 419
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
P EITF+G+L ACSH+G V+ G YF M Y
Sbjct: 420 PDEITFMGLLSACSHSGLVDSGLYYFDKMSSIY 452
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 169/527 (32%), Positives = 253/527 (48%), Gaps = 111/527 (21%)
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
MF I +PD MYNTI R S P +A+ L+ M + + PN+FT FV+KACTR
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRN-------------------------------SLIYF 149
+ VHG +K GF FV N S+I
Sbjct: 61 WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120
Query: 150 HANCGDLNTASVLFD--------GD-------------------------------AKMD 170
+A GD A LF GD + +D
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVD 180
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
++ +L Y++ G+L MAR F+ MP++ +VSW M+ K G ++ A F+ +P+
Sbjct: 181 LILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPE 240
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
R+ VSWN MIS YV G +AL+++++M+S G PD+ T++ +L+AC +GDL VGK V
Sbjct: 241 RNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMV 300
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
H + D L N+L+DMYAKCG ++ AI +F M +R+V +W+ +IGGLA HG
Sbjct: 301 HLYIRDNIHNPDISLI-NSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGR 359
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
A ++I FR M R P ITFV +L +CSH G +E G+ YF+ MR YN++ + HY
Sbjct: 360 ALDAITFFRSMVR-NTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYA 418
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
+HG+V++G+ K+LL +
Sbjct: 419 CMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGI 478
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G +VL+SN+ +W ++++RKLM + +K G S IE ++
Sbjct: 479 SGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNS 525
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 166/514 (32%), Positives = 253/514 (49%), Gaps = 77/514 (14%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
R L +KC N+ LKQ A V G ++++ AL L+ S G++ YA ++F +I
Sbjct: 7 RCLVLLEKCKNVNHLKQAHAQVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACRVFERIH 66
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
P + NTII+ + N ++T+M + P+ +T +VLKAC L ++G
Sbjct: 67 HPTLCICNTIIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKM 126
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VHG K G F+ FV NSL+ ++ CGD+ A +FD ++ V+WS + +GYA+ G+
Sbjct: 127 VHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGD 186
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ AR FDE P +D W MI+GY + N F
Sbjct: 187 VDSARLFFDEAPEKDRGIWGAMISGYVQ-------NSCF--------------------- 218
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
K+ L +F ++ PD+ +S+L+ACA LG L++G +H L T ++ L
Sbjct: 219 ---KEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRL- 274
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
+L+DMYAKCG++E A +F M +RD+ W+ +I GLA HG ++ MF EM++ +
Sbjct: 275 STSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGI 334
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------- 411
+P +ITF+ V ACS++G EG + M Y IEP HYG
Sbjct: 335 KPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEAM 394
Query: 412 -----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
HG +L A KRLL + ++ SG YVLLSN+
Sbjct: 395 VMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERAAKRLLRL-ENHSGVYVLLSNL 453
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
YA+ G+ + +VR +M + + K PGCS +E D
Sbjct: 454 YAASGKHSDARRVRNMMRNKGVDKAPGCSSVEID 487
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 247/496 (49%), Gaps = 70/496 (14%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
++ K++ A + +G + + LR+LI + ++++A +F I P T++YNT+
Sbjct: 1 MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMF 60
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
R A S PL A+ L+ M + P+ +TF F+LKAC+ L + G +H + +K+G
Sbjct: 61 RVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLG 120
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ FV NSLI+ + + +++A +FDG D+ +W++L A YA + AR +FDEM
Sbjct: 121 GHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEM 180
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
P R ++S++ MI Y + ++AL++F
Sbjct: 181 PERSVISYSAMIAAYVRGNRF-------------------------------REALDLFR 209
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
E+ SV P D ++S+L ACA+LG L+VG+ V+ + ALIDM+ KC
Sbjct: 210 ELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKC 269
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
GSIE A+ VF G +++ V W+ ++ GLA HG E+ I F +M V+P +TFV +L
Sbjct: 270 GSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALL 329
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------- 410
CSH+G V EG YF M ++ +EP + H+G
Sbjct: 330 SGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPN 389
Query: 411 ------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
V+ +VE+G LA + L+ Y+ L ++Y G W+ VEKV+
Sbjct: 390 AAIWGSLLNACRVYKNVEIGELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEVEKVKLK 449
Query: 459 MDDSDIKKQPGCSLIE 474
M + +K PGCSLIE
Sbjct: 450 MKEVGCRKGPGCSLIE 465
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/548 (32%), Positives = 265/548 (48%), Gaps = 91/548 (16%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGA----INYAHKMFVKI- 65
L +C++LR KQIQ + D +LI + V G +Y+ + I
Sbjct: 12 LISRCSSLRVFKQIQTQLITRDLLRD-----DLIINKVVTFLGKSADFASYSSVILHSIR 66
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+ +F YNT++ A P +F Y P+ FTF V KAC + G
Sbjct: 67 SVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGK 126
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG + K GF + +V+NSL++F+ CG+ A +F DVV+W+ + G+ R G
Sbjct: 127 QIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTG 186
Query: 186 ELSMARSLFDEMPVR------------------------------------DLVSWNVMI 209
A F +M V L + N +I
Sbjct: 187 LYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALI 246
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDD 268
Y K ++ A +F E+ K+D VSWN+MISG V C +K+A+++F M+ S G +PD
Sbjct: 247 DMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDG 306
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVF 327
+ S+L+ACA LG ++ G+ VH +L T+G+ H G A++DMYAKCG IE A+E+F
Sbjct: 307 HILTSVLSACASLGAVDHGRWVHEYIL--TAGIKWDTHIGTAIVDMYAKCGYIETALEIF 364
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
G+R ++V TW+ L+GGLA HG ES+ F EM +L +P +TF+ L AC H G V+
Sbjct: 365 NGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVD 424
Query: 388 EGKKYFKLMRD-EYNIEPNIRHYGVHGDV------------------------------- 415
EG++YF M+ EYN+ P + HYG D+
Sbjct: 425 EGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILS 484
Query: 416 ---------ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
EL + L++ ++SG YVLLSNI+A+ W+ V ++R+LM I K
Sbjct: 485 ACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISK 544
Query: 467 QPGCSLIE 474
PG S IE
Sbjct: 545 VPGSSYIE 552
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 163/517 (31%), Positives = 262/517 (50%), Gaps = 93/517 (17%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAIN 56
+ N + + CT+L L + + GF S+ ++ G+ ++ G I
Sbjct: 163 QPNHFTFASILPACTDLEVLGEFHDEIVKGGFESN-------VFVGNGLVDMYAKRGCIE 215
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
+A ++F K+ + D +N +I G Q+ DA+ L+ ++ K +
Sbjct: 216 FARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDV--------------- 260
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
N+++ +A CGD+ A LF+ + ++V+W++
Sbjct: 261 ------------------------ITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNT 296
Query: 177 LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW 236
+ AGY + G + A LF MP R+++SWN +I+G+A+ G++E+A +LF +P+ +VVSW
Sbjct: 297 MIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSW 356
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
NAMI+GY G + AL++F +M+ V +P+ T +L ACA L LE G + H ++
Sbjct: 357 NAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVI- 415
Query: 297 MTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
SG + VL GN L+ MYAKCGSIE A +VF MR +D ++ S +I G A +G ++ES+
Sbjct: 416 -RSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESL 474
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
+F +MQ ++P +TFVGVL AC HAG V+EG++YF +M Y+I P + HYG
Sbjct: 475 ELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDL 534
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
H +++LG + L+ + Y
Sbjct: 535 LGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPY 594
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
VLLSNIYA+ G W+ + VR M D +KK+ GCS I
Sbjct: 595 VLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWI 631
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 245 LC--GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
LC G ++AL + ++M G P T SLL C + L K +H ++
Sbjct: 39 LCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQ 98
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
+ GN L+ +Y K GS+ A VF M ++V +W+ +I A H +E++ F EMQ
Sbjct: 99 DISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQ 158
Query: 363 RLKVRPTEITFVGVLVACS 381
+ ++P TF +L AC+
Sbjct: 159 DVGIQPNHFTFASILPACT 177
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 249/485 (51%), Gaps = 88/485 (18%)
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
++R + Q+ V +Y QM+ C ++P+ F + ++K+ G H ++K G
Sbjct: 1 MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLG 55
Query: 136 FEFNRFVRNSLIYFHA-NCGDLNT-------------ASVLFDGDAKMDVVAWSSLTAGY 181
+ FVRN++I +A D N A LFD + +V+ W+++ GY
Sbjct: 56 HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG------------------------- 216
A+ +L AR FD MP R +VSWN M++GYA+ G
Sbjct: 116 AKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAM 175
Query: 217 --------EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPD 267
+++ A +LFN +P R+VV+WN+MI+GY G + A+E+F+EM + + PD
Sbjct: 176 ISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 235
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+VTM+S+++AC LG LE+G V L + ++ H NA+I MY++CGS+E A VF
Sbjct: 236 EVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH-NAMIFMYSRCGSMEDAKRVF 294
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
M RDV +++TLI G A HG E+I + M+ + P +TF+GVL ACSHAG +E
Sbjct: 295 QEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLE 354
Query: 388 EGKKYFKLMRD---------------------------EYNIEPNIRHYG-------VHG 413
EG+K F+ ++D +EP+ YG +H
Sbjct: 355 EGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHK 414
Query: 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
VELG LA +L + D SG+++LLSNIYAS G W VE++R+ M +KK G S +
Sbjct: 415 QVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWV 474
Query: 474 EADDK 478
E K
Sbjct: 475 EYGGK 479
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+R L + Q ++I+G N+ +I+ S G++ A ++F ++ D YNT+I
Sbjct: 259 VRFLTENQIKLSISGHNA-------MIFMYSRC--GSMEDAKRVFQEMATRDVVSYNTLI 309
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
G A + ++A+ L + M++ I+P++ TF VL AC+
Sbjct: 310 SGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACS 348
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/528 (32%), Positives = 271/528 (51%), Gaps = 83/528 (15%)
Query: 2 RTNRHRSSRLW---KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP-GAINY 57
R++R R ++ K C + R L +I A + ++GF+ + L L+ S+ I G++
Sbjct: 21 RSSRVRQQFIFSVLKSCVSFRNLAKIHAQIVVSGFSQKNYILNHLL---SLYISFGSLGS 77
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F IT P T ++N II+G +S+ ++ L+ +M ++ N FT+SF+L AC R
Sbjct: 78 AQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVR 137
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
G +HG+++ G+ N +VR +LI +AN GD GD
Sbjct: 138 SRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGD--------GGDF---------- 179
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
+L AR LFDEMP ++V WN ++ GY ++G+ + A ++F+E+P+R+V +W
Sbjct: 180 --------DLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWT 231
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC----T 293
M++G+ G K AL +F++MR G D V +++ L+ACA+LGDL +GK +H T
Sbjct: 232 IMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERT 291
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
V L+ NALI MYA CG ++ A +VF + R+ +WS++I G A G E
Sbjct: 292 WRSRHLPVLVSLN-NALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVE 350
Query: 354 SIAMFREM---QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
+I +F+ M + +VRP EITF+G L ACSHAG + +G + F+ M + + P I HYG
Sbjct: 351 AIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYG 410
Query: 411 ---------------------------------------VHGDVELGRLANKRL---LNM 428
+H + E+ K L ++
Sbjct: 411 CMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKHLSFEIHP 470
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+G ++LL+N+YA+ G W VR+ M D +KK G S IE +
Sbjct: 471 NNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEIN 518
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 163/514 (31%), Positives = 257/514 (50%), Gaps = 84/514 (16%)
Query: 16 TNLRTLK---QIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDT 70
T L LK Q+ A + + G + +++ Y+ S G I+ + +F I EP +
Sbjct: 81 TGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASS----GDIDSSVSVFNGIGEPSS 136
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++N++IR A+ V Y M + FTF FVLK+ LL MG CVHG
Sbjct: 137 LLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGL 196
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
I++ G +F+ +V SLI + CG++N A +FD DV +W++L AGY + G + A
Sbjct: 197 ILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAA 256
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
++F+ MP R++VSW MI+GY++ G ++A LF+E+ K D
Sbjct: 257 LAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKED------------------ 298
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH--CTLLDMTSGVAKVLHGN 308
G RP+ VT++S+L ACA L LE G+++H + + S + ++
Sbjct: 299 -----------SGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLI--- 344
Query: 309 ALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
AL MYAKCGS+ A F L ++++ W+T+I A +G ++++ FREM + +
Sbjct: 345 ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGI 404
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------- 411
+P +ITF G+L CSH+G V+ G KYF M Y+I P + HY
Sbjct: 405 QPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEAS 464
Query: 412 ------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
H ++E+ A ++L + + +G+YVLLSN+YA G
Sbjct: 465 KLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAG 524
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFL 481
W V+K+R ++ KK PGCS IE + KA +
Sbjct: 525 RWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHM 558
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 174/533 (32%), Positives = 266/533 (49%), Gaps = 99/533 (18%)
Query: 44 IYSGSVVIPGAI-----NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-E 97
++S +V++ G + AHK+F + + D +N ++ G AQ+ +A ++ +M
Sbjct: 108 LFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPH 167
Query: 98 KCSIKPNKFTFSFV----LKACTRLLYRNMGF------CVHGKIVKYGFE------FNRF 141
+ SI N ++V LK RL + C+ G VK F+R
Sbjct: 168 RNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRM 227
Query: 142 -VR-----NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
VR N++I +A GDL+ A LF+ DV W+++ +GY + G + AR FD
Sbjct: 228 PVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFD 287
Query: 196 EMPV-------------------------------RDLVSWNVMITGYAKQGEMEKANEL 224
EMPV R++ SWN MITGY + G + +A +L
Sbjct: 288 EMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKL 347
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F+ +P+RD VSW A+ISGY G ++AL MF EM+ GE + T L+ CAD+ L
Sbjct: 348 FDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAAL 407
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
E+GK+VH ++ + GNAL+ MY KCGS + A +VF G+ ++DV +W+T+I G
Sbjct: 408 ELGKQVHGQVVKAGFETGCFV-GNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAG 466
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
A HGF +++ +F M++ V+P EIT VGVL ACSH+G ++ G +YF M +YN++P
Sbjct: 467 YARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKP 526
Query: 405 NIRHYG---------------------------------------VHGDVELGRLANKRL 425
+HY +HG+ ELG A + +
Sbjct: 527 TSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMV 586
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
M SG YVLLSN+YA+ G W V K+R M ++ ++K G S +E +K
Sbjct: 587 FKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNK 639
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 185/383 (48%), Gaps = 22/383 (5%)
Query: 12 WKKC--TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
W K +++R AL N SS + SG + + A +F K+ E D
Sbjct: 49 WNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISG-YLRNAKFSLARDLFDKMPERD 107
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F +N ++ G +++ +A L+ M K + +++ +L Y GF
Sbjct: 108 LFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDV----VSWNAMLSG-----YAQNGFVDEA 158
Query: 130 KIVKYGFEF-NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+ V N N L+ + + G L A LF+ + ++++W+ L GY +R L
Sbjct: 159 REVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLG 218
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
AR LFD MPVRD++SWN MI+GYA+ G++ +A LFNE P RDV +W AM+SGYV GM
Sbjct: 219 DARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGM 278
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
+A + F+EM ++++ ++L G ++ K V L + N
Sbjct: 279 VDEARKYFDEM----PVKNEISYNAMLA-----GYVQYKKMVIAGELFEAMPCRNISSWN 329
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+I Y + G I +A ++F M RD +W+ +I G A +G EE++ MF EM+R
Sbjct: 330 TMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESS 389
Query: 369 TEITFVGVLVACSHAGKVEEGKK 391
TF L C+ +E GK+
Sbjct: 390 NRSTFSCALSTCADIAALELGKQ 412
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 34/253 (13%)
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
D+V W+ + + R G A +F+ MP R VS+N MI+GY + + A +LF+++P
Sbjct: 45 DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMP 104
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
+RD+ SWN M++GYV +A ++F+ M + D V+ ++L+ A G ++ ++
Sbjct: 105 ERDLFSWNVMLTGYVRNRRLGEAHKLFDLM----PKKDVVSWNAMLSGYAQNGFVDEARE 160
Query: 290 V-----HCTLLDMTSGVAKVLHG---------------------NALIDMYAKCGSIERA 323
V H + +A +H N L+ Y K + A
Sbjct: 161 VFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDA 220
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
++F M RDV +W+T+I G A G ++ +F E V T+ ++
Sbjct: 221 RQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDV----FTWTAMVSGYVQN 276
Query: 384 GKVEEGKKYFKLM 396
G V+E +KYF M
Sbjct: 277 GMVDEARKYFDEM 289
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 259/512 (50%), Gaps = 79/512 (15%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE-P 68
+L KK +L +KQI A V +G ++S L LI+S + +++A +F + P
Sbjct: 60 QLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHS--YIGCRNLSFARIVFDQFPSLP 117
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTR-LLYRNMGF 125
T ++N +I+ +++ + ++++L+ QM +K+TF+FV AC+R R G
Sbjct: 118 PTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGE 177
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
VHG +VK G+E + FV NSL+ Y+
Sbjct: 178 NVHGMVVKDGYESDIFVGNSLVNM-------------------------------YSIFS 206
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+ A+ +FDEMP RD+++W ++ GYA +GE+ +A ELF+ +P R+ VSW M++GYV
Sbjct: 207 RMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVG 266
Query: 246 CGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
+AL+ F +M E +P++ ++S+L+ACA LG L+ GK +H +D +
Sbjct: 267 HRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIH-VYIDKNRILLSS 325
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
ALIDMYAKCG I+ A VF G+ RD+ TW+++I GL+ HG E + F EM
Sbjct: 326 NISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAE 385
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------- 410
+P +IT +GVL CSH+G VEEG F M + I P + HYG
Sbjct: 386 GFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLES 445
Query: 411 -------------------------VHGDVELG-RLANKRLLNMRKDESGDYVLLSNIYA 444
+HGDV+LG R+ N G YVLLSN+YA
Sbjct: 446 AFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYA 505
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
S G+W V KVRK M + PGCS IE D
Sbjct: 506 SMGQWESVTKVRKAMSQRGSEGCPGCSWIEID 537
>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 168/548 (30%), Positives = 266/548 (48%), Gaps = 87/548 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+KC ++ LKQI +L+ + LI + G I YA +F +I + ++
Sbjct: 13 EKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYI 72
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N++I+G + A+F+Y +M++ P+ FTF FVLK C+ + G VH +IV
Sbjct: 73 WNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIV 132
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K GFE + + + L+ + +CGDLN+ +F+ K +VVAW+SL AG+ + A
Sbjct: 133 KTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALR 192
Query: 193 LFDEMP--------------------VRDLVS---------------------WNVMITG 211
LF +M RD+ + +NV++
Sbjct: 193 LFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILAT 252
Query: 212 -----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
YAK G++ A LF+++P+R++V WN+MIS Y G +AL +F +M G P
Sbjct: 253 AIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVP 312
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
+ T LS+++AC +G G+ +H L S V G AL+DMYAK G + A+++
Sbjct: 313 NKATFLSVISACTHMGFRSTGRSLHARALR-ASFHEFVAIGTALMDMYAKAGDADTALKI 371
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEITFVGVLVACSHAGK 385
F +R +DV W+T+I GLA G +E++ +FR M + +V P +IT++ VL ACSH G
Sbjct: 372 FSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGL 431
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYG----------------------------------- 410
VEEG+K F M + Y IEP + HYG
Sbjct: 432 VEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELLMKMPTQPNATILSSIL 491
Query: 411 ----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
++G+V L ++ + SG YVLLSNI+A W ++ R ++ +I K
Sbjct: 492 NGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKACNWQEMKLARDMLKHKNIGK 551
Query: 467 QPGCSLIE 474
G S +E
Sbjct: 552 TLGNSFVE 559
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA--KCGSIERAIEVF 327
T++S L C + +L K++H +L+ TS V ++ + LID A + G IE A VF
Sbjct: 7 TVMSFLEKCKTMKEL---KQIH-SLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVF 62
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
+ R V W+++I G G ++ M+ EMQR P TF VL CS
Sbjct: 63 DQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCS 116
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 172/582 (29%), Positives = 285/582 (48%), Gaps = 127/582 (21%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + T+L + QI A I+G + + +LI S I+YA + + P
Sbjct: 5 LLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHS------IDYARFVLDQTPSPTD 58
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F +N++IR +P +++FLY +M + S KP+ FTF FVLKAC+ L G +H
Sbjct: 59 FSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTH 118
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG------------------------- 165
+++ GF + FV NSLI + C L++A +D
Sbjct: 119 VLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKA 178
Query: 166 -------DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR------------------ 200
+ +VV W+++ GY + G+ SLF +M V
Sbjct: 179 RDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSAC 238
Query: 201 -DLVSWNV----------------------MITGYAKQGEMEKANELFNEVPKRDVVSWN 237
L ++ V +I Y+K G++EKA +F+ V +++ SWN
Sbjct: 239 STLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWN 298
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL--- 294
A+I+G V G+ ++A++++ M++ +P+++T++++L+ACA LG LE+G++VH L
Sbjct: 299 AIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRN 358
Query: 295 -LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
LD+ V+ AL+DMYAKCG I+ A +F+ ++DV+ W+ +I GLA+HG +
Sbjct: 359 GLDL-----NVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRD 413
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
S+A+F +M R V+P ++TF+GVL AC+H+G VEEG+ F M D++ + P + HY
Sbjct: 414 SLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMV 473
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
+H ++EL ++ ++ + G
Sbjct: 474 DLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIG 533
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+LLSNIYAS G W V +VR+ + + IKK GCS +E D
Sbjct: 534 FCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVD 575
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 245/463 (52%), Gaps = 71/463 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + AH++F K+ PD +N +I G A+ L+A+ L+ +M ++P++FT +L
Sbjct: 112 GLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLL 171
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+C +L G VHG + + R I +S L G+A +D+
Sbjct: 172 VSCGQLGNVKFGKAVHGWMER---------RKPTI-----------SSNLILGNALLDM- 210
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
Y + ++ +A F + +D+VSWN+++ G AK GE+E+A F ++P RD
Sbjct: 211 --------YVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRD 262
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+VSWN++++GY G E+ +M PD VTM+SL++A + G L+ G+ H
Sbjct: 263 IVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHG 322
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
++ M + L G+ALIDMY KCGSIERA VF + +DV+ W+T+I GLAFHG+
Sbjct: 323 WVIRMQIKLDAFL-GSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGS 381
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+++ +F EMQ V P ++TFV VL ACSH+G V++G K F M D Y IEP + HYG
Sbjct: 382 KALELFSEMQE-DVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTD-YGIEPGVEHYGCL 439
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
GDVEL +A++ LLN+ +E
Sbjct: 440 VDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLDPEEE 499
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G Y LLSNIYA+ G W+ +K+R+ M+ +KK GCS + D
Sbjct: 500 GGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVD 542
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 146/324 (45%), Gaps = 68/324 (20%)
Query: 40 LRELIYSGSVVIPGAINYAHKMFVKITE-PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98
+ IY +V P ++ A +F T P+ F+YNT+I + S +++ +LY +
Sbjct: 1 MSRFIYFSAVSHPDNLDLAITLFNHFTPNPNLFIYNTLIS-AFSSLKKIESFYLYNVLLS 59
Query: 99 CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158
P+K T ++L+A + C IV F F +++N+LI
Sbjct: 60 SGECPDKQTLLYLLQAVNFISQVKQIHC--QAIVTGLFSFG-YLQNTLIKV--------- 107
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEM 218
Y G + +A +F++MP D+VS+NVMI GYAK+
Sbjct: 108 ----------------------YLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKK--- 142
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
G +A+ +F EM +G PD+ T+L LL +C
Sbjct: 143 ----------------------------GFGLEAMRLFHEMVGLGLEPDEFTILGLLVSC 174
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
LG+++ GK VH + ++ ++ GNAL+DMY KC +E A+ F ++++D+ +
Sbjct: 175 GQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVS 234
Query: 338 WSTLIGGLAFHGFAEESIAMFREM 361
W+ ++ G A G E++ F +M
Sbjct: 235 WNMIVAGCAKVGELEQARLFFYQM 258
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 9/192 (4%)
Query: 218 MEKANELFNE-VPKRDVVSWNAMISGYVLCGMNK-QALEMFEEMRSVGERPDDVTMLSLL 275
++ A LFN P ++ +N +IS + + K ++ ++ + S GE PD T+L LL
Sbjct: 16 LDLAITLFNHFTPNPNLFIYNTLISAF--SSLKKIESFYLYNVLLSSGECPDKQTLLYLL 73
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
A + + K++HC + +T + N LI +Y + G + A +VF M D+
Sbjct: 74 QAVNFISQV---KQIHCQAI-VTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDI 129
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
+++ +I G A GF E++ +F EM L + P E T +G+LV+C G V+ GK
Sbjct: 130 VSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGW 189
Query: 396 M-RDEYNIEPNI 406
M R + I N+
Sbjct: 190 MERRKPTISSNL 201
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/498 (31%), Positives = 257/498 (51%), Gaps = 90/498 (18%)
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+ + + F +N++I A+S + ++A+ ++ M K S+KPN+ TF +K+C+ LL + G
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
H + + +GFE + FV ++L+ ++ CG+L A LFD + ++V+W+S+ GY +
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 231
Query: 185 GELSMARSLFDEMPVR-------------------------------------------- 200
+ A LF E V
Sbjct: 232 DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRG 291
Query: 201 ---DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
DL N ++ YAK GE+ + +F+ + +RDV+SWN++I+ Y GM+ +++E+F
Sbjct: 292 FEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFH 351
Query: 258 EMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYA 315
M GE + VT+ ++L ACA G +GK +H ++ M G+ + V G ++IDMY
Sbjct: 352 RMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKM--GLESNVFVGTSIIDMYC 409
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
KCG +E A + F MR+++V +WS ++ G HG A+E++ +F EM V+P ITFV
Sbjct: 410 KCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVS 469
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------- 410
VL ACSHAG +EEG +FK M E+++EP + HYG
Sbjct: 470 VLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLR 529
Query: 411 --------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
+H +V+LG ++ ++L + G YVLLSNIYA G W VE++R
Sbjct: 530 PDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMR 589
Query: 457 KLMDDSDIKKQPGCSLIE 474
LM +S + K PG SL++
Sbjct: 590 ILMKNSGLVKPPGFSLVD 607
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 189/408 (46%), Gaps = 72/408 (17%)
Query: 2 RTNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSD---SSALRELIYSGSVVIPGAI 55
+ NR K C+ L L +Q I GF D SSAL ++ YS G +
Sbjct: 149 KPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDM-YSKC----GEL 203
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-----------EKCSIKPN 104
A +F +I+ + + ++I G Q+ + A+ L+ + E C + P
Sbjct: 204 RDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVC-VDP- 261
Query: 105 KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD 164
VL AC+R+ +++ VHG ++K GFE + V N+L+ +A CG+L + +FD
Sbjct: 262 -IAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFD 320
Query: 165 GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV----------------- 207
G A+ DV++W+S+ A YA+ G + + +F M +++N
Sbjct: 321 GMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQR 380
Query: 208 -----------------------MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+I Y K G++E A + F+ + +++V SW+AM++GY
Sbjct: 381 LGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 440
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK---KVHCTLLDMTSGV 301
+ G K+ALE+F EM G +P+ +T +S+L AC+ G LE G K D+ GV
Sbjct: 441 MHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV 500
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDR-DVSTWSTLIGGLAFH 348
H ++D+ + G ++ A ++ GM+ R D W L+G H
Sbjct: 501 E---HYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMH 545
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 18/251 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CSIKPNKFTFSFV 111
G + + ++F + E D +N+II AQ+ +++ ++ +M K I N T S V
Sbjct: 310 GELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 369
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L AC + +G C+H +++K G E N FV S+I + CG + A FD + +V
Sbjct: 370 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 429
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNE 227
+WS++ AGY G A +F EM + + +++ ++ + G +E+ F
Sbjct: 430 KSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKA 489
Query: 228 VPKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC---- 278
+ V + M+ G K+A ++ + M+ RPD V +LL AC
Sbjct: 490 MSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKL---RPDFVVWGALLGACRMHK 546
Query: 279 -ADLGDLEVGK 288
DLG++ K
Sbjct: 547 NVDLGEISARK 557
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 224 LFNE-VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
LFN+ V K +V SWN++I+ G + +AL F MR + +P+ T + +C+ L
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
DL G++ H L + + +AL+DMY+KCG + A +F + R++ +W+++I
Sbjct: 167 DLHSGRQAHQQAL-IFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225
Query: 343 GGLAFHGFAEESIAMFREM----------QRLKVRPTEITFVGVLVACSHAGK--VEEGK 390
G + A ++ +F+E + V P I V VL ACS + + EG
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDP--IAMVSVLSACSRVSEKSITEGV 283
Query: 391 KYFKLMR 397
F + R
Sbjct: 284 HGFLIKR 290
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 217/380 (57%), Gaps = 41/380 (10%)
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
F +++ G L+ A+ +F+ + + V+W+++ AGY + ++ AR LFD+MP R
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR 337
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
+ SWN M+TGYA+ G +++A LF+E+P+RD +SW AMISGY G +++AL +F +M+
Sbjct: 338 NTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMK 397
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
G + + L++CA++ LE+GK++H L+ + GNAL+ MY KCGSI
Sbjct: 398 RDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIA-GNALLAMYGKCGSI 456
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
E A +VF + ++D+ +W+T+I G A HGF +E++A+F M ++ ++P ++T VGVL AC
Sbjct: 457 EEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSAC 515
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
SH G V++G +YF M Y I N +HY
Sbjct: 516 SHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAAT 575
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+HGD ELG A +++ M D SG YVLLSN+YA+ G W V ++R M D
Sbjct: 576 WGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRD 635
Query: 462 SDIKKQPGCSLIEADDKAFL 481
+KK PG S +E +K +
Sbjct: 636 KGVKKVPGYSWVEIQNKTHI 655
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 177/368 (48%), Gaps = 22/368 (5%)
Query: 26 ALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQN 85
AL NG S+ + SG + + A K+F K+ + D +N ++ G ++ N
Sbjct: 79 ALSVFNGMRRRSTVTYNAMISG-YLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGN 137
Query: 86 PLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG-KIVKYGFEFNRFVR 143
A L+ QM EK + N F GF KI N
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQN----------GFVEEARKIFDQMLVKNEISW 187
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N L+ + G + A LFD ++V+W+ L GY R+ L ARSLFD MPVRD +
Sbjct: 188 NGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKI 247
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN+MITGYA+ G + +A LF E+P RDV +W AM+SG+V GM +A +FEEM
Sbjct: 248 SWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM---- 303
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
++V+ +++ +E +++ + + N ++ YA+CG+I++A
Sbjct: 304 PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTS-----SWNTMVTGYAQCGNIDQA 358
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+F M RD +W+ +I G A G +EE++ +F +M+R L +C+
Sbjct: 359 KILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEI 418
Query: 384 GKVEEGKK 391
+E GK+
Sbjct: 419 AALELGKQ 426
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 156/322 (48%), Gaps = 45/322 (13%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
V IVK+ + + ++R G +A +F+G + V ++++ +GY +
Sbjct: 56 VDSDIVKWNRKISAYMRK---------GQCESALSVFNGMRRRSTVTYNAMISGYLSNNK 106
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
AR +F++MP RDL+SWNVM++GY K G + A LFN++P++DVVSWNAM+SG+
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
G ++A ++F++M ++++ LL+A G +E +++ + +D L
Sbjct: 167 GFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLM 222
Query: 307 G--------------------------NALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
G N +I YA+ G + A +F + RDV W+
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM--RD 398
++ G +G +E+ +F EM E+++ ++ + ++E+ ++ F M R+
Sbjct: 283 MVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRN 338
Query: 399 EYNIEPNIRHYGVHGDVELGRL 420
+ + Y G+++ ++
Sbjct: 339 TSSWNTMVTGYAQCGNIDQAKI 360
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 144/294 (48%), Gaps = 19/294 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I+ A +F ++ + D + +I G AQS +A+ L+ +M++ N+ + L
Sbjct: 353 GNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACAL 412
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+C + +G +HG++VK GF+ N+L+ + CG + A +F+ + D+V
Sbjct: 413 SSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIV 472
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR---DLVSWNVMITGYAKQGEMEKANELFNEVP 229
+W+++ AGYAR G A +LF+ M + D V+ +++ + G ++K E FN +
Sbjct: 473 SWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMY 532
Query: 230 KRDVVSWNA-----MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
+ ++ NA MI G +AL + M+S+ PD T +LL A GD
Sbjct: 533 QNYGITANAKHYTCMIDLLGRAGRLDEALNL---MKSMPFYPDAATWGALLGASRIHGDT 589
Query: 285 EVGKKVHCTLLDM---TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
E+G+K + +M SG+ +L ++YA G E+ MRD+ V
Sbjct: 590 ELGEKAAEKVFEMEPDNSGMYVLLS-----NLYAASGRWREVREMRSKMRDKGV 638
>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
Length = 570
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 173/518 (33%), Positives = 258/518 (49%), Gaps = 109/518 (21%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F++N +I+ + +P A+FL M + ++ +KF+ S V KAC+RL + G +H
Sbjct: 49 DPFLWNAVIKSHSHGVDPRQALFLLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIH 108
Query: 129 GKIVK----------------------YGFEFNRFVR---------NSLIYFHANCGDLN 157
G + K G+ F R NS+I + CG +
Sbjct: 109 GFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIE 168
Query: 158 TASVLFD-----------------GDAK-----------------MDVVAWSSLTAGYAR 183
+A LFD G A+ D+++W+SL GY +
Sbjct: 169 SARELFDLMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVK 228
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G + A+ LFD MP RD+V+W MI GYAK G + KA LF+ +P RDVV++N+M+ GY
Sbjct: 229 HGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGY 288
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
V + +ALE+F +M PD+ T++ +L+A A LG L +H +++ +
Sbjct: 289 VQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLD 348
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDMY+KCGSI++A+ VF G+ ++ + W+ +IGGLA HG E + M E++
Sbjct: 349 GKL-GVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIE 407
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------HGDV 415
+ ++P ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HYG G +
Sbjct: 408 KRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSI 467
Query: 416 ELGR----------------------------------LANKRLLNMRKDESGDYVLLSN 441
EL + +A +L + S YVLLSN
Sbjct: 468 ELAKHLISEMPIEPNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSS-YVLLSN 526
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
+YAS W V +VR +M + I+K PGCS IE D K
Sbjct: 527 MYASFEMWEDVRRVRTMMKERKIEKVPGCSWIELDGKV 564
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 168/529 (31%), Positives = 278/529 (52%), Gaps = 50/529 (9%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ CT++ LKQIQA +T S + + ++ ++ G IN+AH +F ++ P+T++
Sbjct: 58 ESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQLQNPNTYI 117
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+NT+IRG ++++ + QM + ++ + +F F LKAC + L G VH +
Sbjct: 118 WNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVHCVVW 177
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K GF + V+N L++F+ G L A ++FD ++ DVV+W+S+ GY++ A
Sbjct: 178 KMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGYSKHKWCDEALK 237
Query: 193 LFDEMPVRDLVSWN-----VMITGYAKQGEMEKANELFNEVPKRDVVS----WNAMISGY 243
LFD M + +V N +++ +++G++ V R+V NA++ Y
Sbjct: 238 LFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKTRNVTRSLNLMNAILDMY 297
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
V CG A E+F+ M P + T+ +L C LG L+VG+ +H + M
Sbjct: 298 VKCGCLDSAREIFDTM-GAAFAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEIS 356
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
V+ NALIDMYAKCG I A +VF M +R++ +W+++I A HG A++++++F M
Sbjct: 357 VILANALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMIS 416
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
+P +IT VGVL ACSH G V EG++YF+ M+ +Y IEP HY
Sbjct: 417 GGFKPDDITLVGVLSACSHGGLVAEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLE 476
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
+HG+VE+ ++A RLL + ++SG YVLL+NI A
Sbjct: 477 DAYELITKMPMEPSAAAWGALVHACRMHGNVEVAKIAAPRLLELDPEDSGIYVLLANICA 536
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
S W V+ R++M + +KK PG S++E + + F ++L + P S
Sbjct: 537 SGRRWGDVKMARRMMRERRVKKIPGRSIVEVEGQ-FHEFLAGDESHPQS 584
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 242/461 (52%), Gaps = 81/461 (17%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A +F ++ E D +NT+I G AQ+ L+A L+ + P + F++
Sbjct: 223 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE------SPVRDVFTWT------ 270
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+++ + G L+ A +FDG + + V+W+++
Sbjct: 271 ---------------------------AMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAI 303
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
AGY + + AR LF+ MP +++ SWN MITGYA+ G++ +A F+ +P+RD +SW
Sbjct: 304 IAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWA 363
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
A+I+GY G ++AL +F EM+ GER + T S L+ CA++ LE+GK+VH ++
Sbjct: 364 AIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVV-- 421
Query: 298 TSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+G+ + GNAL+ MY KCG+I+ A VF G+ +++V +W+T+I G A HGF +E++
Sbjct: 422 KAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALM 481
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
+F M++ + P ++T VGVL ACSH G V++G +YF M +Y I N +HY
Sbjct: 482 LFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLL 541
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
+HG+ ELG A K + M D SG YV
Sbjct: 542 GRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYV 601
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
LLSN+YA+ G W V ++R M D +KK PG S +E +K
Sbjct: 602 LLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNK 642
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 162/335 (48%), Gaps = 19/335 (5%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A ++F K+ D +N +I G + +N A L+ QM + + +++ +L
Sbjct: 99 ARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDV----VSWNAMLSG--- 151
Query: 118 LLYRNMGFCVHGKIVKYGFEF-NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
Y G+ K + N N ++ + G + A LF+ A ++++W+
Sbjct: 152 --YAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNC 209
Query: 177 LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW 236
+ GY +R L AR +FD MP RD VSWN MI+GYA+ GE+ +A LF E P RDV +W
Sbjct: 210 MMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTW 269
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
AM+SGYV GM +A +F+ M + V+ +++ ++ +++ +
Sbjct: 270 TAMVSGYVQNGMLDEARRVFDGM----PEKNSVSWNAIIAGYVQCKRMDQARELFEAM-- 323
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
V N +I YA+ G I +A F M RD +W+ +I G A G+ EE++
Sbjct: 324 ---PCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALH 380
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+F EM+R R TF L C+ +E GK+
Sbjct: 381 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQ 415
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 149/296 (50%), Gaps = 25/296 (8%)
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
IVK+ +RN G ++A LF+ + ++W+++ +G + +A
Sbjct: 49 IVKWNIAITNHMRN---------GQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLA 99
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R LF++MP RDLVSWNVMI+G + + A LF+++P+RDVVSWNAM+SGY G K
Sbjct: 100 RQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVK 159
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+A E+F+EM + ++ +L A G +E +++ + D +++ N +
Sbjct: 160 EAKEIFDEMPC----KNSISWNGMLAAYVQNGRIEDARRLFESKADW-----ELISWNCM 210
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+ Y K + A +F M +RD +W+T+I G A +G E+ +F E V
Sbjct: 211 MGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV---- 266
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426
T+ ++ G ++E ++ F M ++ ++ N + G V+ R+ R L
Sbjct: 267 FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAI---IAGYVQCKRMDQAREL 319
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 217/380 (57%), Gaps = 41/380 (10%)
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
F +++ G L+ A+ +F+ + + V+W+++ AGY + ++ AR LFD+MP R
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR 337
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
+ SWN M+TGYA+ G +++A LF+E+P+RD +SW AMISGY G +++AL +F +M+
Sbjct: 338 NTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMK 397
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
G + + L++CA++ LE+GK++H L+ + GNAL+ MY KCGSI
Sbjct: 398 RDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIA-GNALLAMYGKCGSI 456
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
E A +VF + ++D+ +W+T+I G A HGF +E++A+F M ++ ++P ++T VGVL AC
Sbjct: 457 EEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSAC 515
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
SH G V++G +YF M Y I N +HY
Sbjct: 516 SHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAAT 575
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+HGD ELG A +++ M D SG YVLLSN+YA+ G W V ++R M D
Sbjct: 576 WGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRD 635
Query: 462 SDIKKQPGCSLIEADDKAFL 481
+KK PG S +E +K +
Sbjct: 636 KGVKKVPGYSWVEIQNKTHI 655
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 177/368 (48%), Gaps = 22/368 (5%)
Query: 26 ALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQN 85
AL NG S+ + SG + + A K+F K+ + D +N ++ G ++ N
Sbjct: 79 ALSVFNGMRRRSTVTYNAMISG-YLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGN 137
Query: 86 PLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG-KIVKYGFEFNRFVR 143
A L+ QM EK + N F GF KI N
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQN----------GFVEEARKIFDQMLVKNEISW 187
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N L+ + G + A LFD ++V+W+ L GY R+ L ARSLFD MPVRD +
Sbjct: 188 NGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKI 247
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN+MITGYA+ G + +A LF E+P RDV +W AM+SG+V GM +A +FEEM
Sbjct: 248 SWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM---- 303
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
++V+ +++ +E +++ + + N ++ YA+CG+I++A
Sbjct: 304 PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTS-----SWNTMVTGYAQCGNIDQA 358
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+F M RD +W+ +I G A G +EE++ +F +M+R L +C+
Sbjct: 359 KILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEI 418
Query: 384 GKVEEGKK 391
+E GK+
Sbjct: 419 AALELGKQ 426
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 156/322 (48%), Gaps = 45/322 (13%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
V IVK+ + + ++R G +A +F+G + V ++++ +GY +
Sbjct: 56 VDSDIVKWNRKISAYMRK---------GQCESALSVFNGMRRRSTVTYNAMISGYLSNNK 106
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
AR +F++MP RDL+SWNVM++GY K G + A LFN++P++DVVSWNAM+SG+
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
G ++A ++F++M ++++ LL+A G +E +++ + +D L
Sbjct: 167 GFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLM 222
Query: 307 G--------------------------NALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
G N +I YA+ G + A +F + RDV W+
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM--RD 398
++ G +G +E+ +F EM E+++ ++ + ++E+ ++ F M R+
Sbjct: 283 MVSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRN 338
Query: 399 EYNIEPNIRHYGVHGDVELGRL 420
+ + Y G+++ ++
Sbjct: 339 TSSWNTMVTGYAQCGNIDQAKI 360
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 144/294 (48%), Gaps = 19/294 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I+ A +F ++ + D + +I G AQS +A+ L+ +M++ N+ + L
Sbjct: 353 GNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACAL 412
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+C + +G +HG++VK GF+ N+L+ + CG + A +F+ + D+V
Sbjct: 413 SSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIV 472
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR---DLVSWNVMITGYAKQGEMEKANELFNEVP 229
+W+++ AGYAR G A +LF+ M + D V+ +++ + G ++K E FN +
Sbjct: 473 SWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMY 532
Query: 230 KRDVVSWNA-----MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
+ ++ NA MI G +AL + M+S+ PD T +LL A GD
Sbjct: 533 QNYGITANAKHYTCMIDLLGRAGRLDEALNL---MKSMPFYPDAATWGALLGASRIHGDT 589
Query: 285 EVGKKVHCTLLDM---TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
E+G+K + +M SG+ +L ++YA G E+ MRD+ V
Sbjct: 590 ELGEKAAEKVFEMEPDNSGMYVLLS-----NLYAASGRWREVREMRSKMRDKGV 638
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 167/546 (30%), Positives = 268/546 (49%), Gaps = 89/546 (16%)
Query: 13 KKCTNLRTL---KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITE 67
K C+ L + K + V +GF D + + Y+ V AI K+F ++ E
Sbjct: 306 KACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAI----KLFDEMPE 361
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
D +N +I Q P A+ L+ +M+ KP+ T + V+ +C RLL G +
Sbjct: 362 RDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEI 421
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H ++V+ GF + FV ++L+ + CG L A +F+ + +VV+W+S+ AGY+ +G+
Sbjct: 422 HMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDS 481
Query: 188 SMARSLF---DEMPVR------------------------------------DLVSWNVM 208
LF DE +R D+ + +
Sbjct: 482 KSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSL 541
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
I Y K G + A +F +PK +VVSWN MISGYV G +AL +F +MR G +PD
Sbjct: 542 IDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDA 601
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
+T S+L AC+ L LE GK++H +++ + +V+ G AL+DMYAKCG+++ A+ +F
Sbjct: 602 ITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMG-ALLDMYAKCGAVDEALHIFN 660
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
+ +RD +W+++I HG A E++ +F +MQ+ +P ++TF+ +L ACSHAG V+E
Sbjct: 661 QLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDE 720
Query: 389 GKKYFKLMRDEYNIEPNIRHYG-------------------------------------- 410
G YF M EY +P + HY
Sbjct: 721 GCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSA 780
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
+H ++LG + L+ D+ Y++LSN+YAS +W+ V KVR + + +KK P
Sbjct: 781 CHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNP 840
Query: 469 GCSLIE 474
GCS IE
Sbjct: 841 GCSWIE 846
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 164/522 (31%), Positives = 259/522 (49%), Gaps = 85/522 (16%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLD---AVFLYTQMEKCSIKPNKFTFSFVLK 113
YA ++ +I P ++++++ G + L+ + Y QM + + P++ TF +LK
Sbjct: 54 YARRLLCQIQTPSIQLWDSLV-GHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLK 112
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
A +L N F H I+K+GF+ + FVRNSLI ++NCG S +FDG DVV+
Sbjct: 113 AVFKLRDAN-PFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVS 171
Query: 174 WSSLTAGYARRGELSMARSLFDEMP----------------------------------- 198
W+++ G+ R A + F EM
Sbjct: 172 WTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYL 231
Query: 199 ----VR-DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
VR D+ + ++ Y K G + A ++F+E+P R+VV+W A+I+GYV ++ +
Sbjct: 232 EAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGM 291
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
+FEEM P++ T+ S+L+ACA +G L G++VHC ++ + + + G LID
Sbjct: 292 FVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTV-GTTLIDF 350
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YAKCG +E AI VF +R+++V TW+ +I G A HG+A ++ +F M V P E+TF
Sbjct: 351 YAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTF 410
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------- 410
+ VL AC+H G VEEG++ F M++ +N+EP HY
Sbjct: 411 IVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMP 470
Query: 411 ----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
+H D ELG+ A R++ ++ SG Y LL+N+Y+ W+ V +
Sbjct: 471 MEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVAR 530
Query: 455 VRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
VRK M D + K PGCS IE K F+ K S +L
Sbjct: 531 VRKQMKDQQVVKSPGCSWIEVKGKLHEFIAFDDKKPLESDDL 572
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 129/276 (46%), Gaps = 21/276 (7%)
Query: 29 TINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTIIRGSAQS 83
+I+GF ++ +R ++ GS ++ G + A K+F ++ + + +I G Q
Sbjct: 225 SIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQG 284
Query: 84 QNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVR 143
+ +F++ +M K + PN+ T S VL AC + + G VH ++K E N V
Sbjct: 285 RCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVG 344
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL- 202
+LI F+A CG L A ++F+ + +V W+++ G+A G A LF M +
Sbjct: 345 TTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVS 404
Query: 203 ---VSWNVMITGYAKQGEMEKANEL-------FNEVPKRDVVSWNAMISGYVLCGMNKQA 252
V++ V+++ A G +E+ L FN PK D + M+ + G+ ++A
Sbjct: 405 PNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKAD--HYACMVDLFGRKGLLEEA 462
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
+ E M P + +L +C D E+GK
Sbjct: 463 KALIERMPM---EPTNAVWGALFGSCLIHKDYELGK 495
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 167/547 (30%), Positives = 268/547 (48%), Gaps = 89/547 (16%)
Query: 13 KKCTNLRTL---KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITE 67
K C+ L + K + V +GF D + + Y+ V AI K+F ++ E
Sbjct: 114 KACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAI----KLFDEMPE 169
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
D +N +I Q P A+ L+ +M+ KP+ T + V+ +C RLL G +
Sbjct: 170 RDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEI 229
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H ++V+ GF + FV ++L+ + CG L A +F+ + +VV+W+S+ AGY+ +G+
Sbjct: 230 HMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDS 289
Query: 188 SMARSLF---DEMPVR------------------------------------DLVSWNVM 208
LF DE +R D+ + +
Sbjct: 290 KSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSL 349
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
I Y K G + A +F +PK +VVSWN MISGYV G +AL +F +MR G +PD
Sbjct: 350 IDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDA 409
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
+T S+L AC+ L LE GK++H +++ + +V+ G AL+DMYAKCG+++ A+ +F
Sbjct: 410 ITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMG-ALLDMYAKCGAVDEALHIFN 468
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
+ +RD +W+++I HG A E++ +F +MQ+ +P ++TF+ +L ACSHAG V+E
Sbjct: 469 QLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDE 528
Query: 389 GKKYFKLMRDEYNIEPNIRHYG-------------------------------------- 410
G YF M EY +P + HY
Sbjct: 529 GCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSA 588
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
+H ++LG + L+ D+ Y++LSN+YAS +W+ V KVR + + +KK P
Sbjct: 589 CHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNP 648
Query: 469 GCSLIEA 475
GCS IE
Sbjct: 649 GCSWIEV 655
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 164/328 (50%), Gaps = 56/328 (17%)
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKM 169
+LK C Y G +H KIV G + N + SLI + +C +A ++F + +
Sbjct: 9 LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL 68
Query: 170 DVVAWSSLTA--------------------------------------------GYARRG 185
D+ W+ L A GY +
Sbjct: 69 DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 128
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+ +S F D+V + + YAK E A +LF+E+P+RDV SWN +IS Y
Sbjct: 129 HTHVIKSGF----AMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQ 184
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
G ++ALE+FEEM+ G +PD VT+ +++++CA L DLE GK++H L+ SG A L
Sbjct: 185 DGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELV--RSGFA--L 240
Query: 306 HG---NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
G +AL+DMY KCG +E A EVF ++ ++V +W+++I G + G ++ I +FR M
Sbjct: 241 DGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD 300
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGK 390
+RPT T +L+ACS + ++ GK
Sbjct: 301 EEGIRPTLTTLSSILMACSRSVNLQLGK 328
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIERAIE 325
D +LSLL C D L+ GK +H ++ + G+ + +LI++Y C + A
Sbjct: 2 DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSL--GLQNNITLCKSLINLYFSCHLFQSAKL 59
Query: 326 VFLGMRDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHA 383
VF + + D++ W+ L+ + E + +F + ++P T+ VL ACS
Sbjct: 60 VFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGL 119
Query: 384 GKVEEGK 390
G+V GK
Sbjct: 120 GRVGYGK 126
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 154/493 (31%), Positives = 259/493 (52%), Gaps = 77/493 (15%)
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+ P+ +N II+ + + + A+ Y +++ + FTF +LKA +G
Sbjct: 10 LPSPEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIG 69
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS-------- 176
+HG+ +K GF + FV+ +L+ + + + A +F+ DVVAW+S
Sbjct: 70 LALHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYAST 129
Query: 177 -----------------------LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYA 213
+ +GY+ G+ ARS+FD M +D+VSWN MI+ Y
Sbjct: 130 DQMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMISAYI 189
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
+ +ME+A +LF E+P +++++WN M+ G++ + + L++F+EM++ PD +T+
Sbjct: 190 QGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTG 249
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRD 332
+L+ACA G L+ G +VH +D +G+A H ALIDMYAKCGSI++ ++VF +
Sbjct: 250 VLSACAHSGSLKKGTEVHIYAID--NGLASSPHVTTALIDMYAKCGSIQQGLQVFYKSQV 307
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
+D+ W+ LI GLA HG ++ +F +M++ RP +ITF+G+L ACSH+G V+EG +
Sbjct: 308 KDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQL 367
Query: 393 FKLMRDEYNIEPNIRHYG---------------------------------------VHG 413
F M+ E+ I P I HYG VH
Sbjct: 368 FYSMQKEFGISPKIEHYGCMVDLLSRARHLDCALQLIKTMPFKPGEAILGALLSACIVHQ 427
Query: 414 DVELGRLANKRLLNMRKD--ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
D+E+G K L++ R + G+ ++ SN+YAS G+W K R++M+D+ I K G S
Sbjct: 428 DLEVGERVVK-LVSSRGNYLSDGELMMFSNLYASCGQWEEANKWREMMNDTGIVKTAGFS 486
Query: 472 LIEADDKAFLQYL 484
++E + K F ++L
Sbjct: 487 VVEVNGK-FHKFL 498
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 130/278 (46%), Gaps = 19/278 (6%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A +F ++ + +NT+++G Q+Q + + L+ +M+ + P+ T + VL AC
Sbjct: 197 ACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAH 256
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
G VH + G + V +LI +A CG + +F D+ W++L
Sbjct: 257 SGSLKKGTEVHIYAIDNGLASSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNAL 316
Query: 178 TAGYARRGELSMARSLFDEM----PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233
+G A G A ++F++M D +++ +++ + G +++ ++LF + K
Sbjct: 317 ISGLALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYSMQKEFG 376
Query: 234 VSWNAMISGYVLCGMNKQ-----ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
+S G ++ +++ AL++ + M +P + + +LL+AC DLEVG+
Sbjct: 377 ISPKIEHYGCMVDLLSRARHLDCALQLIKTMPF---KPGEAILGALLSACIVHQDLEVGE 433
Query: 289 KVHCTLLDMTSGVAKVLHGNALI---DMYAKCGSIERA 323
+V + + S L L+ ++YA CG E A
Sbjct: 434 RV----VKLVSSRGNYLSDGELMMFSNLYASCGQWEEA 467
>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 422
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 228/377 (60%), Gaps = 2/377 (0%)
Query: 14 KC-TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
KC + + LKQI A++ +G D L+ + I+ A +F + +P+ F+
Sbjct: 37 KCNASFQYLKQIHAVILRSGHFEDHYVSGTLLKCYANPHFKNIDLAFTVFDHVPKPNVFV 96
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
YN II+ + P A+ Y +M + +PNKFT+ +LKAC G +HG ++
Sbjct: 97 YNIIIKACLDNDEPFKAICFYYKMVAANARPNKFTYPSLLKACGVATAAKEGVQLHGHVI 156
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K G + +R++ I +A G + A + D D + DV+ ++++ GY + G++ A+
Sbjct: 157 KQGLTGDVHIRSAGIQMYATLGHMAAARRMLDEDGESDVICFNAMIDGYYKFGDVDSAKE 216
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
LF++M R + SWNVM++G AK G +++A ELFN++ ++D +SW++MI GY+ G K+A
Sbjct: 217 LFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEA 276
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
LE+F M+ RP + S+L ACA+LG L+ G+ +H + + VL G AL+D
Sbjct: 277 LEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVL-GTALVD 335
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCG ++ A +VF M++++V TW+ +I GLA HG AE++I +F +MQ+ KVR EIT
Sbjct: 336 MYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNEIT 395
Query: 373 FVGVLVACSHAGKVEEG 389
FVG+L AC+H G V+EG
Sbjct: 396 FVGLLNACAHKGMVDEG 412
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 118/291 (40%), Gaps = 71/291 (24%)
Query: 102 KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASV 161
KPN F ++ ++KAC C + K+V N+F SL+ CG A
Sbjct: 91 KPNVFVYNIIIKACLDNDEPFKAICFYYKMVAANARPNKFTYPSLL---KACGVATAAK- 146
Query: 162 LFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA 221
G G + + + L ++ +R + I YA G M A
Sbjct: 147 -----------------EGVQLHGHV-IKQGLTGDVHIR-----SAGIQMYATLGHMAAA 183
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM--RSVGERPDDVTMLSLLTACA 279
+ +E + DV+ +NAMI GY G A E+FE+M RSVG
Sbjct: 184 RRMLDEDGESDVICFNAMIDGYYKFGDVDSAKELFEKMEDRSVGS--------------- 228
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
N ++ AK G ++ A E+F MR++D +WS
Sbjct: 229 ---------------------------WNVMVSGLAKNGMVKEARELFNDMREKDEISWS 261
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
++I G G +E++ +F MQ K+RP + VL AC++ G +++G+
Sbjct: 262 SMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGR 312
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 156/466 (33%), Positives = 244/466 (52%), Gaps = 71/466 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G INYA +F +++ D +NT+I + +A L+ +M+ ++ P++ ++
Sbjct: 160 GRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIV 219
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC R NM + N IY L + D +MD
Sbjct: 220 SACGRT--GNMRY------------------NRAIY-----------EFLIENDVRMDTH 248
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
++L YA G + MAR F +M VR+L M++GY+K G ++ A +F++ K+D
Sbjct: 249 LLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKD 308
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+V W MIS YV ++AL +FEEM G +PD V+M S+++ACA+LG L+ K VH
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVH- 367
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ + + +++ NALI+MYAKCG ++ +VF M R+V +WS++I L+ HG A
Sbjct: 368 SCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEAS 427
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+++++F M++ V P E+TFVGVL CSH+G VEEGKK F M DEYNI P + HYG
Sbjct: 428 DALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCM 487
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG++ELG+ A KR+L + D
Sbjct: 488 VDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHD 547
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
G VL+SNIYA W V +R++M++ ++ K+ G S I+ + K+
Sbjct: 548 GALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKS 593
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 101/209 (48%), Gaps = 30/209 (14%)
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
YA G + A +F+E+ RDVV+WN MI Y G+ +A ++FEEM+ PD++ +
Sbjct: 156 YASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMIL 215
Query: 272 LSLLTACADLGDLEVGKKVH---------------CTLLDMTSG---------------V 301
++++AC G++ + ++ L+ M +G V
Sbjct: 216 CNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSV 275
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ A++ Y+KCG ++ A +F +D+ W+T+I + +E++ +F EM
Sbjct: 276 RNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM 335
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGK 390
++P ++ V+ AC++ G +++ K
Sbjct: 336 CCSGIKPDVVSMFSVISACANLGILDKAK 364
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 7/185 (3%)
Query: 224 LFNEVPKR-DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+F+ +P + + +N + + + ++ +R VG R D + L +L A + +
Sbjct: 66 VFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVS 125
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
L G ++H + + + +DMYA CG I A VF M RDV TW+T+I
Sbjct: 126 ALFEGMELHGVAFKIATLCDPFVE-TGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMI 184
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G +E+ +F EM+ V P E+ ++ AC G + + + E+ I
Sbjct: 185 ERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIY-----EFLI 239
Query: 403 EPNIR 407
E ++R
Sbjct: 240 ENDVR 244
>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial [Vitis vinifera]
Length = 681
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 229/400 (57%), Gaps = 42/400 (10%)
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
R L+ + F G+ FE N NS+I + D+ +A VLFD + D ++W+
Sbjct: 280 ARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWN 339
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
++ +GY R ++ A LF EMP D ++WN MI+G+A++G +E A LF +P++++VS
Sbjct: 340 TMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVS 399
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WN+MI+GY G K A E++ +M GE+PD T+ S+L+ C+ L +G ++H +
Sbjct: 400 WNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQIT 459
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEES 354
+ + N+LI MY++CG+I A +F ++ ++V +W+ +IGG AFHGFA ++
Sbjct: 460 KTV--IPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADA 517
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
+ +F M+RLKVRPT ITF+ VL AC+HAG V+EG+ +FK M E+ IEP I H+
Sbjct: 518 LELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVD 577
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
VH +VEL R+A + L+ + + S
Sbjct: 578 IVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAP 637
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
YVLL N+YA G+W+ ++R +M+ ++I+KQPG S +++
Sbjct: 638 YVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWVDS 677
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 44/244 (18%)
Query: 154 GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYA 213
G +N A LFD + ++V W+S+ GY RR E++ AR LFDEMP RD+VSWN+MI+GY
Sbjct: 81 GRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYV 140
Query: 214 K-QGE-MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
QG +E+ LF+E+P+RD VSWN MISGY G +AL++F+ M+ ER
Sbjct: 141 SCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQ---ER------ 191
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
V+ NA++ + + G +ERAIE F+ M
Sbjct: 192 -------------------------------NVVSWNAMVTGFLQNGDVERAIEFFMRMP 220
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI--TFVGVLVACSHAGKVEEG 389
+RD ++ S L+ GL +G +E+ + +R ++ + +L G+V++
Sbjct: 221 ERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKA 280
Query: 390 KKYF 393
++ F
Sbjct: 281 RQLF 284
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 140/296 (47%), Gaps = 54/296 (18%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR-RGE-LSMARSLFDEMPVRD 201
NS+I + ++ A LFD DVV+W+ + +GY +G + R LFDEMP RD
Sbjct: 102 NSMITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERD 161
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
VSWN MI+GY + G M++A +LF+ + +R+VVSWNAM++G++ G ++A+E F M
Sbjct: 162 CVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRM-- 219
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG-NALIDMYAKCGSI 320
ER D ++ +L+ G+L+ K++ T ++H N L+ Y + G +
Sbjct: 220 -PER-DSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRV 277
Query: 321 ERAIE-------------------------------------------VFLGMRDRDVST 337
++A + +F M++RD +
Sbjct: 278 DKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTIS 337
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
W+T+I G EE+ +F+EM P +T+ ++ + G +E + F
Sbjct: 338 WNTMISGYVRMSDMEEAWMLFQEMP----NPDTLTWNSMISGFAQKGNLELARALF 389
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 147/336 (43%), Gaps = 81/336 (24%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A +F ++ E DT +NT+I G + + +A L+ +M PN T ++
Sbjct: 323 ARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEM------PNPDTLTW------- 369
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
NS+I A G+L A LF + ++V+W+S+
Sbjct: 370 --------------------------NSMISGFAQKGNLELARALFATIPQKNLVSWNSM 403
Query: 178 TAGYARRGELSMARSLFDEM------PVRDLVSW-------------------------- 205
AGY G+ A L+ +M P R +S
Sbjct: 404 IAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVI 463
Query: 206 ------NVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFEE 258
N +IT Y++ G + +A +F+EV +++V+SWNAMI GY G ALE+FE
Sbjct: 464 PDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFEL 523
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKC 317
M+ + RP +T +S+L ACA G ++ G ++H + G+ ++ H +L+D+ +
Sbjct: 524 MKRLKVRPTYITFISVLNACAHAGFVKEG-RMHFKSMACEFGIEPRIEHFASLVDIVGRH 582
Query: 318 GSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAE 352
G +E A+++ M + D + W L+G H E
Sbjct: 583 GQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVE 618
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 58/269 (21%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
DL + N I+ + G + +A LF+ +P+R++V+WN+MI+GYV +A ++F+EM
Sbjct: 66 DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEM- 124
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS- 319
PD V+ N +I Y C
Sbjct: 125 -----PD----------------------------------RDVVSWNLMISGYVSCQGR 145
Query: 320 -IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
+E +F M +RD +W+T+I G G +E++ +F MQ V +++ ++
Sbjct: 146 WVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNV----VSWNAMVT 201
Query: 379 ACSHAGKVEEGKKYFKLM--RDEYNIEPNIRHYGVHGDVELGRL--ANKRLLNMRK--DE 432
G VE ++F M RD ++ V G ++ G L A + LL R+ D+
Sbjct: 202 GFLQNGDVERAIEFFMRMPERDSASLSA-----LVAGLIQNGELDEAKRILLTSRRQDDD 256
Query: 433 SGDYVLLSNI-YASRGEWNRVEKVRKLMD 460
GD V NI A G+ RV+K R+L D
Sbjct: 257 KGDLVHAYNILLAGYGQNGRVDKARQLFD 285
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 26/298 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F I + + +N++I G + + A LY QM KP++ T S VL
Sbjct: 380 GNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVL 439
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKMDV 171
C+ ++G +H +I K + + NSLI ++ CG + A +FD + +V
Sbjct: 440 SVCSGFAALHLGMQIHQQITKTVIP-DIPINNSLITMYSRCGAIVEARTIFDEVKLQKEV 498
Query: 172 VAWSSLTAGYARRGELSMARSLFDEM---PVRDLVSWNVMI------TGYAKQGEMEKAN 222
++W+++ GYA G + A LF+ M VR + + G+ K+G M +
Sbjct: 499 ISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKS 558
Query: 223 EL--FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
F P+ + + +++ + G + Q E + + S+ PD +LL AC
Sbjct: 559 MACEFGIEPR--IEHFASLVD---IVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRV 613
Query: 281 LGDLEVGKKVHCTLLDM---TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
++E+ + L+ + +S +LH +MYA G + A E+ + M ++
Sbjct: 614 HNNVELARVAAEALMKLEPESSAPYVLLH-----NMYADVGQWDNATEMRMMMERNNI 666
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 247/461 (53%), Gaps = 81/461 (17%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A +F ++ E D +NT+I G AQ+ L+A L+ E+ ++ + FT++ ++
Sbjct: 142 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF---EESPVR-DVFTWTAMVSG--- 194
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+V+N G L+ A +FDG + + V+W+++
Sbjct: 195 -----------------------YVQN---------GMLDEARRVFDGMPEKNSVSWNAI 222
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
AGY + + AR LF+ MP +++ SWN MITGYA+ G++ +A F+ +P+RD +SW
Sbjct: 223 IAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWA 282
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
A+I+GY G ++AL +F EM+ GER + T S L+ CA++ LE+GK+VH ++
Sbjct: 283 AIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVV-- 340
Query: 298 TSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+G+ + GNAL+ MY KCG+I+ A VF G+ +++V +W+T+I G A HGF +E++
Sbjct: 341 KAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALM 400
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
+F M++ + P ++T VGVL ACSH G V++G +YF M +Y I N +HY
Sbjct: 401 LFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLL 460
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
+HG+ ELG A K + M D SG YV
Sbjct: 461 GRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYV 520
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
LLSN+YA+ G W V ++R M D +KK PG S +E +K
Sbjct: 521 LLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNK 561
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 130/253 (51%), Gaps = 9/253 (3%)
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
N N ++ + G + A LF+ A ++++W+ + GY +R L AR +FD MP
Sbjct: 91 NSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMP 150
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
RD VSWN MI+GYA+ GE+ +A LF E P RDV +W AM+SGYV GM +A +F+
Sbjct: 151 ERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDG 210
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M + V+ +++ ++ +++ + V N +I YA+ G
Sbjct: 211 M----PEKNSVSWNAIIAGYVQCKRMDQARELFEAM-----PCQNVSSWNTMITGYAQNG 261
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
I +A F M RD +W+ +I G A G+ EE++ +F EM+R R TF L
Sbjct: 262 DIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLS 321
Query: 379 ACSHAGKVEEGKK 391
C+ +E GK+
Sbjct: 322 TCAEIAALELGKQ 334
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 16/218 (7%)
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
+ G + + A LF+++P+RDVVSWNAM+SGY G K+A E+F+EM +
Sbjct: 37 LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNS 92
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
++ +L A G +E +++ + D +++ N ++ Y K + A +F
Sbjct: 93 ISWNGMLAAYVQNGRIEDARRLFESKADW-----ELISWNCMMGGYVKRNRLVDARGIFD 147
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
M +RD +W+T+I G A +G E+ +F E V T+ ++ G ++E
Sbjct: 148 RMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDE 203
Query: 389 GKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426
++ F M ++ ++ N + G V+ R+ R L
Sbjct: 204 ARRVFDGMPEKNSVSWNAI---IAGYVQCKRMDQAREL 238
>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
Length = 504
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 229/400 (57%), Gaps = 42/400 (10%)
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
R L+ + F G+ FE N NS+I + D+ +A VLFD + D ++W+
Sbjct: 103 ARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWN 162
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
++ +GY R ++ A LF EMP D ++WN MI+G+A++G +E A LF +P++++VS
Sbjct: 163 TMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVS 222
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WN+MI+GY G K A E++ +M GE+PD T+ S+L+ C+ L +G ++H +
Sbjct: 223 WNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQIT 282
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEES 354
+ + N+LI MY++CG+I A +F ++ ++V +W+ +IGG AFHGFA ++
Sbjct: 283 KTV--IPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADA 340
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
+ +F M+RLKVRPT ITF+ VL AC+HAG V+EG+ +FK M E+ IEP I H+
Sbjct: 341 LELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVD 400
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
VH +VEL R+A + L+ + + S
Sbjct: 401 IVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAP 460
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
YVLL N+YA G+W+ ++R +M+ ++I+KQPG S +++
Sbjct: 461 YVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWVDS 500
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 147/336 (43%), Gaps = 81/336 (24%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A +F ++ E DT +NT+I G + + +A L+ +M PN T ++
Sbjct: 146 ARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEM------PNPDTLTW------- 192
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
NS+I A G+L A LF + ++V+W+S+
Sbjct: 193 --------------------------NSMISGFAQKGNLELARALFATIPQKNLVSWNSM 226
Query: 178 TAGYARRGELSMARSLFDEM------PVRDLVSW-------------------------- 205
AGY G+ A L+ +M P R +S
Sbjct: 227 IAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVI 286
Query: 206 ------NVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFEE 258
N +IT Y++ G + +A +F+EV +++V+SWNAMI GY G ALE+FE
Sbjct: 287 PDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFEL 346
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKC 317
M+ + RP +T +S+L ACA G ++ G ++H + G+ ++ H +L+D+ +
Sbjct: 347 MKRLKVRPTYITFISVLNACAHAGFVKEG-RMHFKSMACEFGIEPRIEHFASLVDIVGRH 405
Query: 318 GSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAE 352
G +E A+++ M + D + W L+G H E
Sbjct: 406 GQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVE 441
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 125/275 (45%), Gaps = 58/275 (21%)
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS----------- 204
++ A LFD + +VV+W+++ G+ + G++ A F MP RD S
Sbjct: 1 MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQN 60
Query: 205 --------------------------WNVMITGYAKQGEMEKANELFNEVP--------- 229
+N+++ GY + G ++KA +LF+++P
Sbjct: 61 GELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDG 120
Query: 230 ---KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+R+VVSWN+MI YV A +F++M+ ER D ++ ++++ + D+E
Sbjct: 121 GRFERNVVSWNSMIMCYVKARDIFSARVLFDQMK---ER-DTISWNTMISGYVRMSDME- 175
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
+L L N++I +A+ G++E A +F + +++ +W+++I G
Sbjct: 176 ----EAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYE 231
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
+G + + ++R+M +P T VL CS
Sbjct: 232 NNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCS 266
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 137/334 (41%), Gaps = 68/334 (20%)
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL--------- 187
E N N+++ GD+ A F + D + S+L AG + GEL
Sbjct: 13 ERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLT 72
Query: 188 ----------------------------SMARSLFDEMPV------------RDLVSWNV 207
AR LFD++P R++VSWN
Sbjct: 73 SRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNS 132
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
MI Y K ++ A LF+++ +RD +SWN MISGYV ++A +F+EM + PD
Sbjct: 133 MIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPN----PD 188
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+T S+++ A G+LE+ + + T+ ++ N++I Y G + A E++
Sbjct: 189 TLTWNSMISGFAQKGNLELARALFATIPQ-----KNLVSWNSMIAGYENNGDYKGATELY 243
Query: 328 LGM----RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC-SH 382
M D T S+++ + GFA + M Q K +I L+ S
Sbjct: 244 RQMLLQGEKPDRHTLSSVLSVCS--GFAALHLGMQIHQQITKTVIPDIPINNSLITMYSR 301
Query: 383 AGKVEEGKKYF---KLMRDEYNIEPNIRHYGVHG 413
G + E + F KL ++ + I Y HG
Sbjct: 302 CGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHG 335
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 13/213 (6%)
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
A LFD M R++VSWN M+TG+ + G++E+A E F +P+RD S +A+++G + G
Sbjct: 4 ALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGEL 63
Query: 250 KQALEMFEEMRSVGERPDDVTMLS--LLTACADLGDLEVGKKVHCTLLDMTSGVA----- 302
+A + R + D+ LL G ++ +++ + G
Sbjct: 64 DEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRF 123
Query: 303 --KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
V+ N++I Y K I A +F M++RD +W+T+I G EE+ +F+E
Sbjct: 124 ERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQE 183
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
M P +T+ ++ + G +E + F
Sbjct: 184 MP----NPDTLTWNSMISGFAQKGNLELARALF 212
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 26/298 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F I + + +N++I G + + A LY QM KP++ T S VL
Sbjct: 203 GNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVL 262
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKMDV 171
C+ ++G +H +I K + + NSLI ++ CG + A +FD + +V
Sbjct: 263 SVCSGFAALHLGMQIHQQITKTVIP-DIPINNSLITMYSRCGAIVEARTIFDEVKLQKEV 321
Query: 172 VAWSSLTAGYARRGELSMARSLFDEM---PVRDLVSWNVMI------TGYAKQGEMEKAN 222
++W+++ GYA G + A LF+ M VR + + G+ K+G M +
Sbjct: 322 ISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKS 381
Query: 223 EL--FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
F P+ + + +++ + G + Q E + + S+ PD +LL AC
Sbjct: 382 MACEFGIEPR--IEHFASLVD---IVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRV 436
Query: 281 LGDLEVGKKVHCTLLDM---TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
++E+ + L+ + +S +LH +MYA G + A E+ + M ++
Sbjct: 437 HNNVELARVAAEALMKLEPESSAPYVLLH-----NMYADVGQWDNATEMRMMMERNNI 489
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 174/521 (33%), Positives = 258/521 (49%), Gaps = 118/521 (22%)
Query: 9 SRLWKKCTNLR--------TLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
S + KKC L +QI A +G + + + + + ++YAH+
Sbjct: 36 SYILKKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQ 95
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I P+ F +NT+IRG A+S+NP+ A+ LY
Sbjct: 96 IFSQIQNPNIFTWNTMIRGYAESENPMPAL---------------------------ELY 128
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC--GDLNTASVLFDGDAK-MDVVAWSSL 177
R M H +C D +T L AK MDV +
Sbjct: 129 RQM--------------------------HVSCIEPDTHTYPFLLKAIAKLMDVREGEKV 162
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
+ R G S+ + N ++ YA G E A++LF + +R++V+WN
Sbjct: 163 HSIAIRNGFESL------------VFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWN 210
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
++I+GY L G +AL +F EM G PD TM+SLL+ACA+LG L +G++ H ++ +
Sbjct: 211 SVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKV 270
Query: 298 TSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
G+ LH GNAL+D+YAKCGSI +A +VF M ++ V +W++LI GLA +GF +E++
Sbjct: 271 --GLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALE 328
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
+F+E++R + P+EITFVGVL ACSH G V+EG YFK M++EY I P I HYG
Sbjct: 329 LFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLL 388
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
+HG + LG +A +LL + SGDYV
Sbjct: 389 GRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYV 448
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
LLSN+YAS W+ V KVR+ M +KK PG SL+E ++
Sbjct: 449 LLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNR 489
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/502 (31%), Positives = 259/502 (51%), Gaps = 81/502 (16%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+ LKQI A NG + + +L+ +P + YA +F +I +P ++YN I
Sbjct: 1 MNQLKQIHAYSLRNGLDHTKFLIEKLLQ-----LPD-LPYACTLFDQIPKPSVYLYNKFI 54
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
+ + +P LY QM PN+++F+F+ AC L G +H K GF
Sbjct: 55 QTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFA 114
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ F +L+ +A G L +A LFD D+ W+SL AGYAR G + A LF++M
Sbjct: 115 SDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKM 174
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
PVR+++SW +I+GYA+ G+ KA E+F G+ +
Sbjct: 175 PVRNVISWTALISGYAQNGKYAKALEMF--------------------IGLENEK----- 209
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAK 316
G +P++V++ S+L AC+ LG L++GK++ + +G K + NA+++++A+
Sbjct: 210 -----GTKPNEVSIASVLPACSQLGALDIGKRIEAYARN--NGFFKNAYVSNAVLELHAR 262
Query: 317 CGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
CG+IE A +VF +G + R++ +W+T+I GLA HG +++ ++ +M K+RP ++TFV
Sbjct: 263 CGNIEEAQQVFDEIGSK-RNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFV 321
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------------------- 411
G+L+AC+H G V EG++ F+ M ++ + P + HYG
Sbjct: 322 GLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPM 381
Query: 412 ----------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
HG+VELG +A + L + G+YV+LSNIYA G+W+ V ++
Sbjct: 382 APDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARL 441
Query: 456 RKLMDDSDIKKQPGCSLIEADD 477
RK+M I K+ G S IE D
Sbjct: 442 RKMMKGGHITKRAGYSYIEVGD 463
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 166/508 (32%), Positives = 260/508 (51%), Gaps = 113/508 (22%)
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-LYRNMGFCVH 128
TF++N +IR SA S +P + ++ + +C + P++FT +L + +L + G VH
Sbjct: 59 TFLHNILIRASASSASPRLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVH 118
Query: 129 GKIVKYGFEFNRFVRNSLIYFHA--------------------------------NCGDL 156
+ V+ GF + FV N+L+ + CG++
Sbjct: 119 AQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEM 178
Query: 157 NTASVLFD------------------GDAKMD---------------VVAWSSLTAGYAR 183
+A +FD ++D VV W+S+ G+AR
Sbjct: 179 ESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFAR 238
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G L +AR +FDEMPVR+LVSWN M+ GY+ +M+ A ELF+ +P++DVVSW MISGY
Sbjct: 239 HGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGY 298
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
G + LE+F M++ +P++VTM+S+L+ACA+L LE G+ VH +D V
Sbjct: 299 AQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVH-AFIDKHKMVL 357
Query: 303 KVLH--GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ G ALIDMYAKCG + A+++F + ++VS W+ LI LA +G A++S+ F +
Sbjct: 358 NNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQ 417
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRL 420
M+R +P +ITFVGVL ACSH G V+EG++ F+ M ++P ++HYG D+ LGR
Sbjct: 418 MKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDM-LGRA 476
Query: 421 A------------------------------NKRL------------LNMRKDESGDYVL 438
+KR LN+ +SG +VL
Sbjct: 477 GLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVL 536
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKK 466
+S+IYA+ G+W V + R+++ S I+K
Sbjct: 537 ISDIYAAAGKWFDVLEARQVVQRSGIRK 564
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 128/294 (43%), Gaps = 15/294 (5%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFTFSFVLKACT 116
A ++F + E D + +I G AQ+ D + L+ M+ + +++PN+ T VL AC
Sbjct: 276 ARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACA 335
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNR--FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
L G VH I K+ N + +LI +A CG + A +F+ + +V AW
Sbjct: 336 NLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAW 395
Query: 175 SSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEVP- 229
++L A G + F++M + +++ ++T + G +++ F +
Sbjct: 396 NALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMAS 455
Query: 230 ----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+ +V + M+ G+ ++A E+ +RS+ PD + +LL AC +
Sbjct: 456 TCGVQPEVKHYGCMVDMLGRAGLLEEAEEL---IRSMPMAPDVMVFGALLGACRMHKRFD 512
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
V ++V + + + + D+YA G +E ++ + W+
Sbjct: 513 VAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKWT 566
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A K+F + + +N +I A + N D+V + QM++ KPN TF VL
Sbjct: 375 GRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVL 434
Query: 113 KACTRLLYRNMGFCVHGKIVKYG 135
AC+ HG +V G
Sbjct: 435 TACS-----------HGGLVDEG 446
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/399 (38%), Positives = 220/399 (55%), Gaps = 34/399 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +K +N +K +QA + N + D +R+L+ ++YA +F +I P T
Sbjct: 38 LLQKGSNFTHVKLVQAKIIRNNLSDDQLLVRKLL--RLCFSYQKVDYATLIFDQIQNPHT 95
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F +N +IR + N A+ LY M P+KFTF FV+KAC + G VHG
Sbjct: 96 FTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIKACLDHSALDKGKEVHGF 155
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+K GF + F+ N+L+ + CGDL+ A LFD A VV+W++ AG GEL A
Sbjct: 156 AIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSWTTFVAGLVACGELDTA 215
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R+ FDEMP+R++VSW MI GY K N+ P +
Sbjct: 216 RAAFDEMPMRNVVSWTAMINGYVK-----------NQRP--------------------Q 244
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+A E+F+ M+ RP+ T++ LL AC +LG LE+G+++H L+ V V G AL
Sbjct: 245 EAFELFQRMQLANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVG-VFLGTAL 303
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMY+KCGSIE A +VF M+ + ++TW+++I L HGF +E++A+F +M+ VRP
Sbjct: 304 IDMYSKCGSIEDAKKVFEEMQKKSLATWNSMITSLGVHGFGKEALALFAQMEEANVRPDA 363
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
ITFVGVL AC + VE G +YFK M + Y I P + HY
Sbjct: 364 ITFVGVLFACVNTNNVEAGYRYFKYMTEHYGITPMLEHY 402
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 182/541 (33%), Positives = 269/541 (49%), Gaps = 100/541 (18%)
Query: 36 DSSALRELIYSGSVVIPGAI-----NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAV 90
D R+L+ S +V+I G + A ++F ++ E D +NTI+ G AQ+ DA
Sbjct: 114 DEMPERDLV-SWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDAR 172
Query: 91 FLYTQM-EKCSIKPNKFTFSFVL-----KACTRLLYRNM-----------GFCVHGKIVK 133
++ +M EK + N ++V +AC R GF KIV+
Sbjct: 173 RVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVE 232
Query: 134 YGFEFNRF-VR-----NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR---- 183
F+ VR N++I +A G+++ A LFD DV W+++ +GY +
Sbjct: 233 ARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMV 292
Query: 184 ------------RGELS---------------MARSLFDEMPVRDLVSWNVMITGYAKQG 216
R E+S MA+ LFD MP R++ +WN MITGYA+ G
Sbjct: 293 EEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCG 352
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
++ +A LF+++PKRD VSW AMI+GY G + +AL +F M G R + + S L+
Sbjct: 353 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALS 412
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
CAD+ LE+GK++H L+ + GNAL+ MY KCGSIE A ++F M +D+
Sbjct: 413 TCADVVALELGKQLHGRLVKGGYETGCFV-GNALLLMYCKCGSIEEANDLFKEMAGKDIV 471
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+W+T+I G + HGF EE++ F M+R ++P + T V VL ACSH G V++G++YF M
Sbjct: 472 SWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTM 531
Query: 397 RDEYNIEPNIRHYG---------------------------------------VHGDVEL 417
+Y + PN +HY VHG+ EL
Sbjct: 532 TQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTEL 591
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
A ++ M + SG YVLLSN+YAS G W V K+R M D +KK PG S IE +
Sbjct: 592 AETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQN 651
Query: 478 K 478
K
Sbjct: 652 K 652
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 169/343 (49%), Gaps = 25/343 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
G A +F ++ E D +N +I+G +++N A L+ +M E+ N +
Sbjct: 104 GEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYA 163
Query: 112 LKAC---TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168
C R ++ M E N N+L+ + L A VLF
Sbjct: 164 QNGCVDDARRVFDRMP------------EKNDVSWNALLSAYVQNSKLEEACVLFGSREN 211
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+V+W+ L G+ ++ ++ AR FD M VRD+VSWN +ITGYA+ GE+++A +LF+E
Sbjct: 212 WALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDES 271
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
P DV +W AM+SGY+ M ++A E+F+ M ER ++V+ ++L +E+ K
Sbjct: 272 PVHDVFTWTAMVSGYIQNRMVEEARELFDRM---PER-NEVSWNAMLAGYVQGERVEMAK 327
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
+ L D+ V N +I YA+CG I A +F M RD +W+ +I G +
Sbjct: 328 E----LFDVMP-CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQS 382
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
G + E++ +F M+R R +F L C+ +E GK+
Sbjct: 383 GHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQ 425
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 130/262 (49%), Gaps = 13/262 (4%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N I + G + A +F + V+++++ +GY R GE +AR LFDEMP RDLV
Sbjct: 63 NVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLV 122
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWNVMI GY + + KA ELF +P+RDV SWN ++SGY G A +F+ M
Sbjct: 123 SWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRM---- 178
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
+DV+ +LL+A LE C L A ++ N L+ + K I A
Sbjct: 179 PEKNDVSWNALLSAYVQNSKLEEA----CVLFGSRENWA-LVSWNCLLGGFVKKKKIVEA 233
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+ F M+ RDV +W+T+I G A +G +E+ +F E V T+ ++
Sbjct: 234 RQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDV----FTWTAMVSGYIQN 289
Query: 384 GKVEEGKKYFKLMRDEYNIEPN 405
VEE ++ F M + + N
Sbjct: 290 RMVEEARELFDRMPERNEVSWN 311
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/533 (32%), Positives = 262/533 (49%), Gaps = 77/533 (14%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
R L C + R +KQ+ A + G +L+ S + I+YAH +F
Sbjct: 3 RCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIF-APISYAHMVFDHFP 61
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVF--LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+PD F+YNTII+ A S F + + + + PN+++F+F K C + G
Sbjct: 62 QPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEG 121
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
V +K G E N FV N+LI + N +D V
Sbjct: 122 EQVRVHAIKLGLENNLFVTNALIGMYVN----------------LDFVV----------- 154
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
AR +FD P RD+ SWN+M++GYA+ G+M++A +LF+E+P++DVVSW MISG +
Sbjct: 155 ----DARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCL 210
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G +AL++F M + G P++ T+ S L ACA+L L+ G+ +H + + +
Sbjct: 211 QVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNER 270
Query: 305 LHGNALIDMYAKCGSIERAIEVFLG--MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L LIDMYAKCG +E A ++F R V W+ +IGG A HG ++E+I +F +M+
Sbjct: 271 LLA-GLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMK 329
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------ 410
KV P ++TFV +L ACSH +VEEG+ YF+ M Y ++P + HYG
Sbjct: 330 IEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRL 389
Query: 411 ---------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
+H D E+G K + + + G +VLL+NIY
Sbjct: 390 KEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIY 449
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
+ G WN +R+ + +S KK PGCS IE + F Q+L + P + L
Sbjct: 450 SLTGNWNEARTLREKIAESGKKKTPGCSSIELNG-MFHQFLVGDRSHPQTKQL 501
>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 250/484 (51%), Gaps = 75/484 (15%)
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N IIR N A+ Y ++++ + +TF +LKA R+ +GF +HG+ +
Sbjct: 18 WNEIIRKQMHMGNGAQAILTYLKVQELGFHADNYTFPILLKAAGRICASKIGFALHGQTI 77
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL--------------- 177
K GF + FV+ +L+ + N + A +F+ D++AW+S+
Sbjct: 78 KTGFCAHAFVQTALVNMYGNLHCIGDAFKVFEIMPVKDLIAWNSMLDAYASNAQMDYASN 137
Query: 178 ----------------TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA 221
+GY+ RGE +ARS+FD M VRD VSWN MI+ Y + G+MEK
Sbjct: 138 LFNSMPLKDISSFNIMISGYSTRGEAMLARSIFDSMEVRDFVSWNSMISAYIRAGDMEKG 197
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
LF E+P ++ V+WN MI+G + L++FEEM++ PD +T+ S+L+ C L
Sbjct: 198 LALFREMPVKNTVTWNTMITGCLQSEHFGMVLDLFEEMKTANYIPDYLTVTSVLSTCGHL 257
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
G L G K+H +D +G+ H ALIDMY+KCGSIE+ + VF + +D+ W+
Sbjct: 258 GSLGTGIKIHIYAID--NGLVSSPHVTTALIDMYSKCGSIEQGLHVFCKSQVKDIYCWNA 315
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
LI LA HG ++ +F +M++ ++P +ITF+G++ ACSH+G V+EG + F M++++
Sbjct: 316 LISALALHGHGYAALKVFGKMRKNHIQPDDITFIGIINACSHSGLVQEGCQLFVSMQEDF 375
Query: 401 NIEPNIRHYGVH------------------------GDVELGRL-----------ANKRL 425
I P + HYG G+ LG L +R+
Sbjct: 376 GISPKLEHYGCMVNLLGRSGHLALALQVIETMPFEPGESILGALLSACIIYQDLETGERV 435
Query: 426 LNMRKDES-----GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
+ + ++ G+ ++ SN+YAS G W + R++M+ + I K G S+IE + F
Sbjct: 436 IELVCSKAHYLSDGELMMFSNLYASCGNWEEANRWREMMNSTGIVKTAGYSVIEVSGR-F 494
Query: 481 LQYL 484
++L
Sbjct: 495 QKFL 498
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 134/304 (44%), Gaps = 23/304 (7%)
Query: 36 DSSALRELIYSGSVVIP----GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF 91
DS +R+ + S++ G + +F ++ +T +NT+I G QS++ +
Sbjct: 171 DSMEVRDFVSWNSMISAYIRAGDMEKGLALFREMPVKNTVTWNTMITGCLQSEHFGMVLD 230
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151
L+ +M+ + P+ T + VL C L G +H + G + V +LI ++
Sbjct: 231 LFEEMKTANYIPDYLTVTSVLSTCGHLGSLGTGIKIHIYAIDNGLVSSPHVTTALIDMYS 290
Query: 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNV 207
CG + +F D+ W++L + A G A +F +M D +++
Sbjct: 291 KCGSIEQGLHVFCKSQVKDIYCWNALISALALHGHGYAALKVFGKMRKNHIQPDDITFIG 350
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSV 262
+I + G +++ +LF + + +S + M++ G AL++ E M
Sbjct: 351 IINACSHSGLVQEGCQLFVSMQEDFGISPKLEHYGCMVNLLGRSGHLALALQVIETMPF- 409
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI---DMYAKCGS 319
P + + +LL+AC DLE G++V +++ A L L+ ++YA CG+
Sbjct: 410 --EPGESILGALLSACIIYQDLETGERV----IELVCSKAHYLSDGELMMFSNLYASCGN 463
Query: 320 IERA 323
E A
Sbjct: 464 WEEA 467
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 7/193 (3%)
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P +V WN +I + G QA+ + +++ +G D+ T LL A + ++G
Sbjct: 10 LPSSEVKKWNEIIRKQMHMGNGAQAILTYLKVQELGFHADNYTFPILLKAAGRICASKIG 69
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
+H + T A AL++MY I A +VF M +D+ W++++ A
Sbjct: 70 FALHGQTIK-TGFCAHAFVQTALVNMYGNLHCIGDAFKVFEIMPVKDLIAWNSMLDAYAS 128
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM--RDEYNIEPN 405
+ + + +F M + I G S G+ + F M RD +
Sbjct: 129 NAQMDYASNLFNSMPLKDISSFNIMISGY----STRGEAMLARSIFDSMEVRDFVSWNSM 184
Query: 406 IRHYGVHGDVELG 418
I Y GD+E G
Sbjct: 185 ISAYIRAGDMEKG 197
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/399 (37%), Positives = 223/399 (55%), Gaps = 34/399 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C N + L+QI A + +G ++D R+LI+ S G I YA +F +I P T
Sbjct: 33 LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYST--HGRIAYAILLFYQIQNPCT 90
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F +N IIR + + A+ LY M I +KFTF FV+KACT L ++G VHG
Sbjct: 91 FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++KYGF + FV+N+LI F+ CG A +F+ +VV+W+++ +G G+L A
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +FDE+P +++VSW MI GY + N+ P +
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIR-----------NQQP--------------------E 239
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ALE+F+ M++ P++ TM+SL+ AC ++G L +G+ +H + + L G AL
Sbjct: 240 EALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYL-GTAL 298
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMY+KCGSI+ AIEVF M + + TW+++I L HG +E++ +F EM+R+ V+P
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDA 358
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
ITF+GVL AC H V+EG YF M Y I P HY
Sbjct: 359 ITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHY 397
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 157/506 (31%), Positives = 252/506 (49%), Gaps = 88/506 (17%)
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
N A + + + + +N++I A+ + ++A+ ++ + K + P + +F +K+C
Sbjct: 1966 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 2025
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+ L G H + +GFE + FV ++LI ++ CG L A LFD +VV+W+
Sbjct: 2026 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 2085
Query: 176 SLTAGYARRGELSMARSLF-----DEMPVRD----------LVS---------------- 204
S+ GY + + A LF +E V D +VS
Sbjct: 2086 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG 2145
Query: 205 ----------------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
N ++ YAK G+ + ++F+ + ++D +SWN+MI+ Y G+
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 2205
Query: 249 NKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+ +ALE+F M R VG R + VT+ ++L ACA G L GK +H ++ M V G
Sbjct: 2206 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEY-NVCVG 2264
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
++IDMY KCG +E A + F M++++V +W+ ++ G HG A+E++ +F +M R V+
Sbjct: 2265 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 2324
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P ITFV VL ACSHAG VEEG +F M+ +Y+IEP I HYG
Sbjct: 2325 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYN 2384
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+H +V+LG +A ++L + D G YVLLSN+YA G
Sbjct: 2385 LIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGR 2444
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIE 474
W VE++R LM + + K PG SL+E
Sbjct: 2445 WADVERMRMLMKNRQLVKPPGFSLVE 2470
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 117/309 (37%), Gaps = 35/309 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A K F ++ E + + ++ G +A+ ++ +M + +KPN TF VL
Sbjct: 2275 GRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVL 2334
Query: 113 KACTRLLYRNMGFCVHGKIV-KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKMD 170
AC+ G+ + KY E ++ G LN A L K D
Sbjct: 2335 AACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPD 2394
Query: 171 VVAWSSLTAGYAR------RGELSMARSLFDEMPVRDLVSWNVMITG-YAKQG------- 216
V W SL G R GE++ A+ LF+ P D + V+++ YA G
Sbjct: 2395 FVVWGSLL-GACRIHKNVDLGEIA-AQKLFELDP--DNCGYYVLLSNLYADAGRWADVER 2450
Query: 217 -EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE--------EMRSVGERPD 267
M N + P +V + +++ EM E++ +G P+
Sbjct: 2451 MRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPN 2510
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA--LIDMYAKCGSIERAIE 325
++L + D + E+ +VH L + GV G +I CG I+
Sbjct: 2511 MTSVLHDV----DEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIK 2566
Query: 326 VFLGMRDRD 334
+ + RD
Sbjct: 2567 LISKLVHRD 2575
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 248/496 (50%), Gaps = 71/496 (14%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
++ K++ A + +G + + LR+LI + ++++A +F + P T++YNT+
Sbjct: 1 MQEAKRLHAHLITSGLHQQENHLRKLI-TLYTSSSSSLHHARLLFDAVYHPSTYLYNTMF 59
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
R A S PL A+ L+ M + P+ +TF F+LKAC+ L + G +H + +K+G
Sbjct: 60 RVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLG 119
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ FV NSLI+ + + +++A +FDG D+ +W++L A YA + AR +FDEM
Sbjct: 120 GHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEM 179
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
P R +VS++ M+ Y + ++ALE+F
Sbjct: 180 PERSVVSYSAMLAAYVRGNRF-------------------------------REALELFR 208
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
E+ SV P D ++S+L ACA+LG L+VG+ V+ + ALIDM+ KC
Sbjct: 209 ELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFKC 268
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
GSIE A+ VF G +++ V W+ ++ GLA HG E+ I F +M ++P E+TFV +L
Sbjct: 269 GSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGIKPDEVTFVALL 328
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------- 410
CSH+G V EG YF M ++ +EP + H+G
Sbjct: 329 SGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPN 388
Query: 411 ------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
V+ +VE+G LA + L+ Y+ L ++Y G W+ VEKV+
Sbjct: 389 AAIWGALLNACRVYKNVEVGELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEVEKVKLK 448
Query: 459 MDDSDIKKQPGCSLIE 474
M + +K PGCSLIE
Sbjct: 449 MKEVGCRKGPGCSLIE 464
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 160/512 (31%), Positives = 256/512 (50%), Gaps = 90/512 (17%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D + +N++I A+ + +++ ++ M K IKPN+ TF +K+C+ L N G H
Sbjct: 46 DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAH 105
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+ + +GFE + FV ++LI ++ CG L+ A VLFD + ++V W+SL GY + +
Sbjct: 106 QQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAH 165
Query: 189 MARSLF-------------------DEMPVRDLVSW------------------------ 205
A +F D + + ++S
Sbjct: 166 EALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDK 225
Query: 206 -----NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM- 259
N ++ YAK GE+ + ++F+++ ++DVVSWN+MI+ Y G++ A E+F M
Sbjct: 226 VMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGML 285
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
++ G + ++VT+ +LL ACA G L VG +H ++ M V V+ ++IDMY KCG
Sbjct: 286 KAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGY-VNNVIMATSIIDMYCKCGQ 344
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
E A F GM++++V +W+ +I G HGFA E++ +F +M V+P ITF+ VL A
Sbjct: 345 AEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAA 404
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSHAG +EEG ++F M EYN+EP + HYG
Sbjct: 405 CSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFV 464
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+H DVEL ++ + L + G YVLL+NIYA G W VE++R L+
Sbjct: 465 LWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVK 524
Query: 461 DSDIKKQPGCSLIEADDKAFLQYLFNLKPKPN 492
D + K PG SL+E + + +L K P
Sbjct: 525 DRGLVKPPGYSLVELKGRVHV-FLVGDKEHPQ 555
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 13/246 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI-KPNKFTFSFV 111
G ++ + K+F + E D +N++I AQ+ DA ++ M K K N+ T S +
Sbjct: 241 GEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTL 300
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L AC +G C+H +++K G+ N + S+I + CG A FDG + +V
Sbjct: 301 LLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNV 360
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNE 227
+W+++ AGY G A +F +M + +++ ++ + G +E+ FN
Sbjct: 361 RSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNA 420
Query: 228 VPKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ V + M+ G K+A + + M+ R D V SLL AC
Sbjct: 421 MSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKV---RRDFVLWGSLLAACRIHK 477
Query: 283 DLEVGK 288
D+E+ +
Sbjct: 478 DVELAE 483
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 224 LFNEVPKR-DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
LFN+ R DV SWN++I+ G + ++L F MR + +P+ T + +C+ L
Sbjct: 37 LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
DL GK+ H L + + + +ALIDMY+KCG + A +F + R++ TW++LI
Sbjct: 97 DLNSGKQAHQQAL-VFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLI 155
Query: 343 GGLAFHGFAEESIAMFREM---------QRLKVRPTEITFVGVLVACSHAGK--VEEG 389
G + A E++ +F+E + + + + VL ACS V EG
Sbjct: 156 TGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEG 213
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 167/506 (33%), Positives = 256/506 (50%), Gaps = 85/506 (16%)
Query: 53 GAINYAHKMF-VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CSIKPNKFTFSF 110
I +A +MF + D F+ N++I+ + ++ LY + + S P+ FTFS
Sbjct: 34 AGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSV 93
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
+ K+C + G +H +V GF + + +L+ +A G ++ A LFD
Sbjct: 94 LAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRS 153
Query: 171 VVAWSSLTAGYARRGELS-------------------------------MARSLFDEMPV 199
V+W++L GY R G++ AR LFDEMP
Sbjct: 154 QVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPE 213
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
R +VSW +MI GY+ G ++ A LF+ +P++++ SWNAMISGY +AL++F EM
Sbjct: 214 RSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEM 273
Query: 260 RSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKVLHGNALIDMY 314
+S PD+VT++S+L A ADLG L++G VH + LD + V G ALIDMY
Sbjct: 274 QSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNV-----GTALIDMY 328
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
AKCG I ++ VF M +++ ++W+ LI A +G A+E++ +F EM P EIT +
Sbjct: 329 AKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMI 388
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRL-------------- 420
GVL AC+H+G VEEGK++FK M +E+ + P I HYG D+ LGR
Sbjct: 389 GVLSACNHSGLVEEGKRWFKAM-EEFGLTPKIEHYGCMVDL-LGRAGCLQEAEKLMESMP 446
Query: 421 --AN------------------------KRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
AN K + M G+Y++L N+YA+ W ++
Sbjct: 447 YEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADE 506
Query: 455 VRKLMDDSDIKKQPGCSLIEADDKAF 480
V+ LM + +KK+ GCS IE D + +
Sbjct: 507 VKGLMRRNGVKKEAGCSAIEVDSRVW 532
>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 597
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 168/559 (30%), Positives = 280/559 (50%), Gaps = 89/559 (15%)
Query: 6 HRSSRLWKK----CTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYA 58
H SS L+ K C LKQ I + + NGF+S+ +LI V G A
Sbjct: 34 HLSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIF--YVKFGETINA 91
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
K+F ++ E + + I G A++ + DA+ +++QM + ++ N+FT+ VL+ACT L
Sbjct: 92 RKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGL 151
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
G +HG I K F N FV+++L+ H+ CG++ A LF+ ++ DVV+W+++
Sbjct: 152 RCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVI 211
Query: 179 AGYARRG----ELSMARSLFDEMPVRDLVSWNV--------------------------- 207
GYA + M S+ E D +
Sbjct: 212 GGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFG 271
Query: 208 --------MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL-CGMNKQALEMFEE 258
+I YAK M+ A+ L+ + K+DV+S+ A+++GY C +++AL++F++
Sbjct: 272 SHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKD 331
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M+ + DDVT ++L CAD+ L +G+++H + V GNAL+DMYAK G
Sbjct: 332 MQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSY-DVATGNALVDMYAKSG 390
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
IE A F M++++V +W++LI G HG+ E+IA++++M+ ++P +ITF+ +L
Sbjct: 391 EIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLF 450
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------- 410
ACSH+G EG + F M +YNI P HY
Sbjct: 451 ACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNS 510
Query: 411 -----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459
++G + LG +A LL M + S +YV+L+ IYA+ G W++ ++R LM
Sbjct: 511 SLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYVVLAGIYAASGSWDKACRMRNLM 570
Query: 460 DDSDIKKQPGCSLIEADDK 478
+ +KK PG S+I++ +K
Sbjct: 571 EYRSLKKIPGYSIIQSTNK 589
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/446 (35%), Positives = 235/446 (52%), Gaps = 79/446 (17%)
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
++N +I G +S+ + + M + + P T+ VL AC + Y +G VH +
Sbjct: 90 VWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCV 149
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
V G + V N+LI +A C +++ A W
Sbjct: 150 VASGVLPDLKVGNALIDMYAECSEMDAA--------------WE---------------- 179
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
LF+ M VR+ VSW +I+G+ + G++++A LF+ +P+RD VSW AMI GYV G ++
Sbjct: 180 -LFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFRE 238
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKVLHG 307
ALEMF EM+ R D+ TM+S++TACA LG LE G+ + + M + V G
Sbjct: 239 ALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFV-----G 293
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
NAL+DMY+KCGSI++A+ VF M RD TW+ +I GLA +G EE+I MF M R+
Sbjct: 294 NALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEA 353
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P E+TF+GVL AC+HAG V++G+ +F M Y I PN+ H+G
Sbjct: 354 PDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALE 413
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
VHG+ E+G+LA + LL + + Y+LLSN+YA
Sbjct: 414 TIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNR 473
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIE 474
W V ++R+++ + IKK+PGCSLIE
Sbjct: 474 WEDVRRLRQVIMEKGIKKEPGCSLIE 499
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 122/301 (40%), Gaps = 63/301 (20%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F + E DT + +I G Q+ +A+ ++ +M+ ++ ++FT V+
Sbjct: 203 GQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVV 262
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC +L G + ++G + + FV N+L+ ++ CG +
Sbjct: 263 TACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQ-------------- 308
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
A +F EM +RD +W +I G A G E
Sbjct: 309 -----------------ALGVFKEMYIRDKFTWTAVILGLAVNGHGE------------- 338
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+A+ MF M V E PD+VT + +LTAC G ++ G+
Sbjct: 339 ------------------EAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFL 380
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHGFA 351
++ V+H LID+ + G ++ A+E M R + + W TL+ HG +
Sbjct: 381 SMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNS 440
Query: 352 E 352
E
Sbjct: 441 E 441
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 169/509 (33%), Positives = 259/509 (50%), Gaps = 83/509 (16%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C Q+ A +T GF + AL L+ S+ INYA +F P+T
Sbjct: 31 LLEICKFTTEFAQLHARLTKLGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPNT 90
Query: 71 FMYNTIIRGSAQSQNPLDAVFL-YTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F YN +IRG AQ + P +A+ L Y+ + + NK TF FVLKAC+++ G VHG
Sbjct: 91 FAYNVMIRGYAQREKPENALSLFYSMLCNANSGQNKLTFPFVLKACSQVRAIEEGKQVHG 150
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ K+G + FV+NSLI +++CG + G+A +
Sbjct: 151 LVFKHGLSEDLFVQNSLISMYSSCGLI-----------------------GFACQ----- 182
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
+F+++ D+VSWN MI+G G +E+ ++F+ + KR +V+WN +I GYV G+
Sbjct: 183 ---VFNKIDDPDVVSWNSMISGLVDLGFVEEGKQMFDRMSKRSLVTWNCLIDGYVKAGLL 239
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
+A E+F++MR TM+S+LTAC+ LG LE G+ + + V VL G A
Sbjct: 240 MEARELFDQMR--------FTMVSVLTACSYLGALEQGEWMQAHIEKNGIDVNSVL-GTA 290
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
L++M+AKCGSIERA+ VF + +RDV W+++I LA HG +E+ A+F +M R
Sbjct: 291 LVEMFAKCGSIERALSVFKSIEERDVGAWNSIIHKLAAHGHGQEAFAIFSDMLRSNTLLD 350
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------VHGD--------- 414
I F+G+L C H G V+EGK++F+LM +EY + P + HYG H D
Sbjct: 351 GIIFLGLLSVCRHLGLVDEGKRFFQLMSEEYGLVPKVEHYGCMVDLLCHADLLEEARDLI 410
Query: 415 ---------------------------VELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
+ +G A K LL + + Y +LSN+Y++ G
Sbjct: 411 DSSHASQMKSSVPMWGALLGVSCQLKNIVMGEYAAKHLLQLDPFDGNCYTVLSNLYSAAG 470
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ + +VR M ++K PG S +E D
Sbjct: 471 LYEKAIEVRNEMKKQGLEKIPGSSSMEID 499
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/399 (37%), Positives = 223/399 (55%), Gaps = 34/399 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C N + L+QI A + +G ++D R+LI+ S G I YA +F +I P T
Sbjct: 33 LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYST--HGRIAYAILLFYQIQNPCT 90
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F +N IIR + + A+ LY M I +KFTF FV+KACT L ++G VHG
Sbjct: 91 FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++KYGF + FV+N+LI F+ CG A +F+ +VV+W+++ +G G+L A
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +FDE+P +++VSW MI GY + N+ P +
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIR-----------NQQP--------------------E 239
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ALE+F+ M++ P++ TM+SL+ AC ++G L +G+ +H + + L G AL
Sbjct: 240 EALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYL-GTAL 298
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMY+KCGSI+ AIEVF M + + TW+++I L HG +E++ +F EM+R+ V+P
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDA 358
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
ITF+GVL AC H V+EG YF M Y I P HY
Sbjct: 359 ITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHY 397
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/524 (30%), Positives = 259/524 (49%), Gaps = 89/524 (16%)
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
N A + + + + +N++I A+ + ++A+ ++ + K + P + +F +K+C
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 1152
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+ L G H + +GFE + FV ++LI ++ CG L A LFD +VV+W+
Sbjct: 1153 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 1212
Query: 176 SLTAGYARRGELSMARSLF-----DEMPVRD----------LVS---------------- 204
S+ GY + + A LF +E V D +VS
Sbjct: 1213 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG 1272
Query: 205 ----------------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
N ++ YAK G+ + ++F+ + ++D +SWN+MI+ Y G+
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 1332
Query: 249 NKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+ +ALE+F M R VG R + VT+ ++L ACA G L GK +H ++ M V G
Sbjct: 1333 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEY-NVCVG 1391
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
++IDMY KCG +E A + F M++++V +W+ ++ G HG A+E++ +F +M R V+
Sbjct: 1392 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 1451
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P ITFV VL ACSHAG VEEG +F M+ +Y+IEP I HYG
Sbjct: 1452 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYN 1511
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+H +V+LG +A ++L + D G YVLLSN+YA G
Sbjct: 1512 LIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGR 1571
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPN 492
W VE++R LM + + K PG SL+E + + +L K P+
Sbjct: 1572 WADVERMRMLMKNRQLVKPPGFSLVELKGRVHV-FLVGDKEHPH 1614
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/501 (31%), Positives = 253/501 (50%), Gaps = 74/501 (14%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C NL +KQI V G + L +LI + + + YA ++ + + F++
Sbjct: 59 CINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWT 118
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
+IRG A +A+ +Y M K I P FTFS +LKAC + N+G H + +
Sbjct: 119 AVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRL 178
Query: 135 -GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF F +V N++I + C ++ A R +
Sbjct: 179 RGFCF-VYVGNTMIDMYVKCESIDCA-------------------------------RKV 206
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FDEMP RD++SW +I YA+ G ME A ELF +P +D+V+W AM++G+ ++AL
Sbjct: 207 FDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEAL 266
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG-KKVHCTLLDMTSGVAKVLHGNALID 312
E F+ M G R D+VT+ ++ACA LG + + V S V+ G+ALID
Sbjct: 267 EYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALID 326
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEI 371
MY+KCG++E A+ VF+ M +++V T+S++I GLA HG A+E++ +F M + +++P +
Sbjct: 327 MYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTV 386
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TFVG L+ACSH+G V++G++ F M + ++P HY
Sbjct: 387 TFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKT 446
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+H + E+ +A + L + D G+Y+LLSN+YAS G+W V
Sbjct: 447 MSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGV 506
Query: 453 EKVRKLMDDSDIKKQPGCSLI 473
+VRKL+ + +KK P S +
Sbjct: 507 LRVRKLIKEKGLKKTPAVSWV 527
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/406 (34%), Positives = 239/406 (58%), Gaps = 35/406 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L C ++ LK+I AL+ G + D + +L+ ++ ++Y++K+ + + P T
Sbjct: 19 LLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTT 78
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F +NT+IR + ++NP ++ ++ +M + + P+ T+ F++KA ++LL + +G VH
Sbjct: 79 FNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVH 138
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
IVK G E ++F++NSLI+ +A+C D+ +A
Sbjct: 139 IVKSGHEIDKFIQNSLIHMYASCRDIASA------------------------------- 167
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +FDEMP ++LV+WN M+ GYAK G++ A E+FN +P++DVVSW+++I GYV +
Sbjct: 168 RKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYG 227
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+A+ +FE M G ++VT++S L ACA LG LE G+ +H +++ + VL +L
Sbjct: 228 EAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQ-TSL 286
Query: 311 IDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+DMYAKCG+I A+ VF +++ DV W+ +IGGLA HG +E++ +F EM+ + + P
Sbjct: 287 VDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVP 346
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGD 414
EIT++ +L C+H G VEE +F +R ++ + P + HY D
Sbjct: 347 DEITYLCLLSCCAHGGLVEEAWYFFDCLR-KHGMIPKVEHYACMVD 391
>gi|326530660|dbj|BAK01128.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 613
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 161/467 (34%), Positives = 236/467 (50%), Gaps = 80/467 (17%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+ A ++F + PD +NT++R +S A L+ QM P + S+
Sbjct: 150 GSHASARRLFADVPRPDAVTWNTLLRACLRSGLLPSARHLFDQM------PVRDLVSY-- 201
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
NS++ HA GD++ A LFDG + DVV
Sbjct: 202 -------------------------------NSMLSGHAAAGDMDGARQLFDGMPERDVV 230
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+W+S+ AG+ R G++ AR +FD MP RD+VSWN M+ GYA+ G++ A +F+ +P+R
Sbjct: 231 SWNSMLAGHTRCGDMEEARRMFDAMPERDVVSWNSMLDGYAQAGDVLAARAVFDGMPRRS 290
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLSLLTACADLGDLEVGKKVH 291
VSWN +++ Y ++ L +F+ M +VG P++ T +S+LTAC LGDLE GK+VH
Sbjct: 291 TVSWNVVLALYARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGKRVH 350
Query: 292 CTLLD-MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
+ + V VL AL+ MYAKCG +E A +F M +R V +W+++I G HG
Sbjct: 351 DLVRQRWETLVPDVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPSWNSMIIGYGLHGQ 410
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
+E+++ +F EM+R RP E TFV VL +C+H G V EG F M Y +EP H+G
Sbjct: 411 SEKALELFLEMERTGPRPNETTFVCVLSSCAHGGLVLEGWWCFDRMVRLYGVEPKAEHFG 470
Query: 411 VHGDV---------------------------------------ELGRLANKRLLNMRKD 431
D+ LG K+L+ MR
Sbjct: 471 CMMDLLGRAGLLTDSDTLVQNLQEKASPALWGAMVSASRAQNGSRLGEFVGKKLIEMRPK 530
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
E G YVLLSNIYA G WN VEKVR++M + +K G SL+ + +
Sbjct: 531 EVGPYVLLSNIYAGEGRWNDVEKVREMMKGNGAEKDVGLSLVGSSEP 577
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 11/244 (4%)
Query: 165 GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANEL 224
G D+ +SL A Y G + AR LF ++P D V+WN ++ + G + A L
Sbjct: 130 GHLPADLRLANSLLARYLAHGSHASARRLFADVPRPDAVTWNTLLRACLRSGLLPSARHL 189
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F+++P RD+VS+N+M+SG+ G A ++F+ M ER D V+ S+L GD+
Sbjct: 190 FDQMPVRDLVSYNSMLSGHAAAGDMDGARQLFDGM---PER-DVVSWNSMLAGHTRCGDM 245
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
E +++ + + V+ N+++D YA+ G + A VF GM R +W+ ++
Sbjct: 246 EEARRMFDAMPER-----DVVSWNSMLDGYAQAGDVLAARAVFDGMPRRSTVSWNVVLAL 300
Query: 345 LAFHGFAEESIAMFREMQRLKVR-PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY-NI 402
A E + +F M + P E TFV VL AC G +E GK+ L+R + +
Sbjct: 301 YARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRWETL 360
Query: 403 EPNI 406
P++
Sbjct: 361 VPDV 364
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 158/502 (31%), Positives = 259/502 (51%), Gaps = 81/502 (16%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+ LKQI A NG + + +L+ +P + YA +F +I +P ++YN I
Sbjct: 1 MNQLKQIHAYSLRNGLDHTKFLIEKLLQ-----LPD-LPYACTLFDQIPKPSVYLYNKFI 54
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
+ + +P LY QM PN+++F+F+ AC L G +H K GF
Sbjct: 55 QTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFA 114
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ F +L+ +A G L +A LFD D+ W+SL AGYAR G + A LF++M
Sbjct: 115 SDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKM 174
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
PVR+++SW +I+GYA+ G+ KA E+F G+ +
Sbjct: 175 PVRNVISWTALISGYAQNGKYAKALEMF--------------------IGLENEK----- 209
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAK 316
G +P++V++ S+L AC+ LG L++GK++ + +G K + NA+++++A+
Sbjct: 210 -----GTKPNEVSIASVLPACSQLGALDIGKRIEAYARN--NGFFKNAYVSNAVLELHAR 262
Query: 317 CGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
CG+IE A +VF +G + R++ +W+T+I GLA HG +++ ++ +M K+RP ++TFV
Sbjct: 263 CGNIEEAQQVFDEIGSK-RNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFV 321
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------------------- 411
G+L+AC+H G V EG++ F+ M ++ + P + HYG
Sbjct: 322 GLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPM 381
Query: 412 ----------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
HG+VELG +A + L + G+YV+LSNIYA G+W+ V ++
Sbjct: 382 APDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARL 441
Query: 456 RKLMDDSDIKKQPGCSLIEADD 477
RK+M I K+ G S IE D
Sbjct: 442 RKMMKGGHITKRAGYSYIEVGD 463
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/496 (31%), Positives = 256/496 (51%), Gaps = 85/496 (17%)
Query: 34 NSDSSALRELIYSG------------SVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
N+ RE+++ G +V + ++YA+K K+++P + +N +IRG +
Sbjct: 771 NAGFGIFREMVHKGRFPVSVDRNYMLAVNVTSDVDYAYKFLSKLSDPPNYGWNFVIRGFS 830
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
S+NP ++ +Y QM + + P+ T+ F++K+ +RL R +G +H +VK G E++ F
Sbjct: 831 NSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLF 890
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRD 201
+ N+LI+ + + D +A LFD ++V W+S+ YA+ G++ AR +FDEM RD
Sbjct: 891 ICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERD 950
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
+V+W+ MI GY K+GE KA E+F+++ MR
Sbjct: 951 VVTWSSMIDGYVKRGEYNKALEIFDQM------------------------------MRM 980
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
+ ++VTM+S++ ACA LG L GK VH +LD+ + +L +LIDMYAKCGSI
Sbjct: 981 GSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQ-TSLIDMYAKCGSIG 1039
Query: 322 RAIEVFL--GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
A VF +++ D W+ +IGGLA HGF ES+ +F +M+ K+ P EITF+ +L A
Sbjct: 1040 DAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAA 1099
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------------------------- 411
CSH G V+E +FK ++ E EP HY
Sbjct: 1100 CSHGGLVKEAWHFFKSLK-ESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGS 1158
Query: 412 -----------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
HG++EL K+L+ ++ G YV L+N+YA ++ +R+ M+
Sbjct: 1159 MLGALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAME 1218
Query: 461 DSDIKKQPGCSLIEAD 476
+KK G S+++ D
Sbjct: 1219 KKGVKKIAGHSILDLD 1234
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 157/376 (41%), Gaps = 71/376 (18%)
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
+M+ PD Y ++I G S P +A+F + +M+ PN+ TF +++
Sbjct: 674 RMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQ------ 727
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
G C G + +L+YF + + + + D + SL +
Sbjct: 728 ----GLCKCG-----------WSGEALVYFRE----------MEEKEMEPDSAVYLSLVS 762
Query: 180 GYARRGELSMARSLFDEM------PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233
+ ++ +F EM PV V N M+ +++ A + +++
Sbjct: 763 SFLSSENINAGFGIFREMVHKGRFPVS--VDRNYML-AVNVTSDVDYAYKFLSKLSDPPN 819
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC- 292
WN +I G+ ++++ ++ +M G PD +T L+ + + L + ++G +HC
Sbjct: 820 YGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCS 879
Query: 293 --------------TLLDMTSGV---------------AKVLHGNALIDMYAKCGSIERA 323
TL+ M ++ N+++D YAK G + A
Sbjct: 880 VVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSA 939
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSH 382
VF M +RDV TWS++I G G +++ +F +M R+ + E+T V V+ AC+H
Sbjct: 940 RLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAH 999
Query: 383 AGKVEEGKKYFKLMRD 398
G + GK + + D
Sbjct: 1000 LGALNRGKTVHRYILD 1015
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/360 (20%), Positives = 134/360 (37%), Gaps = 72/360 (20%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
A+ H + P MYN II G + +++ L +M+ ++P++FT + +
Sbjct: 458 AVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQFTLNCIYG 517
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
+ K+ YGFE +++++ C + +D
Sbjct: 518 CLAERCDFVGALDLLKKMRFYGFE--PWIKHTTFLVKKLC----------ENGRAVDACK 565
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR-- 231
+ AG G + V+ I G K +++ ELF ++
Sbjct: 566 YLDDVAGEGFLGHM---------------VASTAAIDGLIKNEGVDRGLELFRDICANGH 610
Query: 232 --DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
DV++++ +I +A +F EM S G +P T
Sbjct: 611 CPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATY------------------ 652
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM----RDRDVSTWSTLIGGL 345
N++ID + K G I+R + + M ++ DV T+++LI GL
Sbjct: 653 ------------------NSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGL 694
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
G E+I + EM+ P ITF+ ++ G E YF+ M +E +EP+
Sbjct: 695 CASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREM-EEKEMEPD 753
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 114/292 (39%), Gaps = 41/292 (14%)
Query: 69 DTFMYNTI--IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL------- 119
D + YN + I A+ L A+ + +C + P F F L+
Sbjct: 105 DMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPGAFGFFIRCLGNAGLVDEASSVF 164
Query: 120 --YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASV---------LFDGDAK 168
R MG CV N + N L+ N++SV + D
Sbjct: 165 DRVREMGLCVP----------NAYTYNCLL---EAISKSNSSSVELVEARLKEMRDCGFH 211
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV---MITGYAKQGEMEKANELF 225
D + + Y G+ A S+F+E+ R + ++ ++ + K G+++KA EL
Sbjct: 212 FDKFTLTPVLQVYCNTGKSERALSVFNEILSRGWLDEHISTILVVSFCKWGQVDKAFELI 271
Query: 226 NEVPKRDV----VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
+ +RD+ ++ +I G+V +A ++FE+MR +G D L+
Sbjct: 272 EMLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKH 331
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
DLE+ ++ + + + G L +++ + R EV +G D+
Sbjct: 332 KDLEMALSLYLEIKRSGIPPDRGILGKLLCS-FSEESELSRITEVIIGDIDK 382
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 171/542 (31%), Positives = 269/542 (49%), Gaps = 93/542 (17%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
+LR ++I +V NGF S+ A+ ++ Y+ I A+KMF ++ + D +N
Sbjct: 157 DLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKC----RQIEDAYKMFERMPQRDLVSWN 212
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
T++ G AQ+ AV + QM++ KP+ T VL A L +G +HG +
Sbjct: 213 TVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRA 272
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
GFE+ V +++ + CG + +A ++F G + +VV+W+++ GYA+ GE A + F
Sbjct: 273 GFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATF 332
Query: 195 DEM------PVR---------------------------------DLVSWNVMITGYAKQ 215
+M P D+ N +I+ Y+K
Sbjct: 333 LKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKC 392
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
++ A +F + + VV+WNAMI GY G +AL +F EM+S +PD T++S++
Sbjct: 393 KRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVI 452
Query: 276 TACADLGDLEVGKKVHC----TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
TA ADL K +H TL+D V ALID +AKCG+I+ A ++F M+
Sbjct: 453 TALADLSVTRQAKWIHGLAIRTLMD-----KNVFVCTALIDTHAKCGAIQTARKLFDLMQ 507
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+R V TW+ +I G +G E++ +F EMQ V+P EITF+ V+ ACSH+G VEEG
Sbjct: 508 ERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMY 567
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
YF+ M++ Y +EP + HYG +H
Sbjct: 568 YFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIH 627
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
+VELG L ++ D+ G +VLL+N+YAS W++V +VR M+ I+K PGCSL
Sbjct: 628 KNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSL 687
Query: 473 IE 474
+E
Sbjct: 688 VE 689
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 204/425 (48%), Gaps = 42/425 (9%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
RH S+ L + CT+L+ L QI L+ NGF ++ +LI +I A ++F
Sbjct: 44 RHPSAILLELCTSLKELHQILPLIIKNGFYNEHLFQTKLI--SLFCKFNSITEAARVFEP 101
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+ +Y+T+++G A++ DAV Y +M + P + F+++L+ L G
Sbjct: 102 VEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRG 161
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+HG ++ GF+ N F +++ +A C + A +F+ + D+V+W+++ AGYA+
Sbjct: 162 REIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQN 221
Query: 185 GELSMARSLFDEM-----------------PVRDLVSWNV-------------------- 207
G A + +M V DL + +
Sbjct: 222 GFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVA 281
Query: 208 --MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
M+ Y K G + A +F + R+VVSWN MI GY G +++A F +M G
Sbjct: 282 TAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVE 341
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
P +V+M+ L ACA+LGDLE G+ VH LLD V N+LI MY+KC ++ A
Sbjct: 342 PTNVSMMGALHACANLGDLERGRYVH-RLLDEKKIGFDVSVMNSLISMYSKCKRVDIAAS 400
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VF ++ + V TW+ +I G A +G E++ +F EMQ ++P T V V+ A +
Sbjct: 401 VFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSV 460
Query: 386 VEEGK 390
+ K
Sbjct: 461 TRQAK 465
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 169/536 (31%), Positives = 259/536 (48%), Gaps = 84/536 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
K+I V GF S ++ + LI + G ++ AHK+F ++ + D +N++I G
Sbjct: 573 KRIHGCVYKLGFGSYNTVVNSLI--ATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCV 630
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
+ A+ + QM + + T + AC + ++G +HG+ VK F
Sbjct: 631 MNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVM 690
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV-- 199
N+L+ ++ CG+LN A F+ + VV+W+SL A Y R G A LF EM
Sbjct: 691 FNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKG 750
Query: 200 ------------------------RDLVSW-------------NVMITGYAKQGEMEKAN 222
RD+ ++ N ++ YAK G ME+A
Sbjct: 751 VSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAY 810
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+F+++P +D+VSWN MI GY + +AL++F EM+ RPD +TM LL AC L
Sbjct: 811 LVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK-ESRPDGITMACLLPACGSLA 869
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
LE+G+ +H +L +G + LH NALIDMY KCGS+ A +F + ++D+ TW+ +
Sbjct: 870 ALEIGRGIHGCIL--RNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVM 927
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I G HG E+IA F++M+ ++P EITF +L ACSH+G + EG +F M E N
Sbjct: 928 ISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECN 987
Query: 402 IEPNIRHYG---------------------------------------VHGDVELGRLAN 422
+EP + HY +H DVEL
Sbjct: 988 MEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVA 1047
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + + D +G YVLL+NIYA +W V+K+R+ + +KK PGCS IE K
Sbjct: 1048 EHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGK 1103
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 134/456 (29%), Positives = 233/456 (51%), Gaps = 51/456 (11%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI-TEPDTFM 72
KC L+ K + ++++ NG + +L++ V GA+ ++F I ++ F+
Sbjct: 465 KC--LQEGKMVHSVISSNGIPIEGVLGAKLVFM--YVSCGALREGRRIFDHILSDNKVFL 520
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC--VHGK 130
+N ++ A+ + ++++L+ +M+K I N +TFS +LK C L R +G C +HG
Sbjct: 521 WNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILK-CFATLGR-VGECKRIHGC 578
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG---------- 180
+ K GF V NSLI + G++++A LFD DVV+W+S+ +G
Sbjct: 579 VYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSA 638
Query: 181 -------------------------YARRGELSMARSLFDE----MPVRDLVSWNVMITG 211
A G LS+ R+L + R+++ N ++
Sbjct: 639 LEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDM 698
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
Y+K G + A + F ++ ++ VVSW ++I+ YV G+ A+ +F EM S G PD +M
Sbjct: 699 YSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSM 758
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
S+L ACA L+ G+ VH + + + NAL+DMYAKCGS+E A VF +
Sbjct: 759 TSVLHACACGNSLDKGRDVHNYIRKNNMALCLPV-SNALMDMYAKCGSMEEAYLVFSQIP 817
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+D+ +W+T+IGG + + E++ +F EMQ+ + RP IT +L AC +E G+
Sbjct: 818 VKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK-ESRPDGITMACLLPACGSLAALEIGRG 876
Query: 392 -YFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426
+ ++R+ Y+ E ++ + + V+ G L + RLL
Sbjct: 877 IHGCILRNGYSSELHVANALIDMYVKCGSLVHARLL 912
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 164/357 (45%), Gaps = 57/357 (15%)
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147
+AV L +K + N +S +L+ C G VH I G + L+
Sbjct: 436 NAVELLRMSQKSELDLN--AYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLV 493
Query: 148 YFHANCGDLNTASVLFD---GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV- 203
+ + +CG L +FD D K V W+ + + YA+ G+ + LF +M +
Sbjct: 494 FMYVSCGALREGRRIFDHILSDNK--VFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITG 551
Query: 204 ----------------------------------SWNV----MITGYAKQGEMEKANELF 225
S+N +I Y K GE++ A++LF
Sbjct: 552 NSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLF 611
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+E+ RDVVSWN+MISG V+ G + ALE F +M + D T+++ + ACA++G L
Sbjct: 612 DELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLS 671
Query: 286 VGKKVHCTLLDMTSGVA-----KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
+G+ +H GV +V+ N L+DMY+KCG++ AI+ F M + V +W++
Sbjct: 672 LGRALH------GQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTS 725
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
LI G +++I +F EM+ V P + VL AC+ +++G+ +R
Sbjct: 726 LIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR 782
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/377 (24%), Positives = 172/377 (45%), Gaps = 46/377 (12%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV----IPGAINYAHKMFVKITEPDT 70
C N+ +L +AL +G + RE++++ +++ G +N A + F K+ +
Sbjct: 664 CANVGSLSLGRAL---HGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTV 720
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+ ++I + DA+ L+ +ME + P+ ++ + VL AC + G VH
Sbjct: 721 VSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNY 780
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
I K V N+L+ +A CG + A ++F D+V+W+++ GY++ + A
Sbjct: 781 IRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEA 840
Query: 191 RSLFDEM---------------PV-----------------------RDLVSWNVMITGY 212
LF EM P +L N +I Y
Sbjct: 841 LKLFAEMQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMY 900
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
K G + A LF+ +P++D+++W MISG + G+ +A+ F++MR G +PD++T
Sbjct: 901 VKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFT 960
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
S+L AC+ G L G +++ + K+ H ++D+ A+ G++ +A + M
Sbjct: 961 SILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPI 1020
Query: 333 R-DVSTWSTLIGGLAFH 348
+ D + W L+ G H
Sbjct: 1021 KPDATIWGALLCGCRIH 1037
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 218/389 (56%), Gaps = 41/389 (10%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
NS+I G+L+ A LFD D V+W+++ GY + GE++ A LF+ MP R++V
Sbjct: 16 NSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFESMPERNVV 75
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SW+ M++GY K G+ME A LF+ +P +++VSW ++SGY + G+ K A+ FE+M G
Sbjct: 76 SWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAG 135
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
+PDD T++S+L +CA+ G L +GK+VH T ++ V NAL+DMYAKCG ++RA
Sbjct: 136 LKPDDGTVISILASCAESGLLGLGKRVH-TSIERIRYKCSVNVSNALVDMYAKCGQVDRA 194
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+ VF GM +D+ +W+ ++ GLA HG E+++ +F M++ RP ++T V VL AC HA
Sbjct: 195 LSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHA 254
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G V+EG +YF M +Y I P+I HYG
Sbjct: 255 GFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGT 314
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
+H V L L + + G+Y LLSNI+AS G+W+ V VR M + I
Sbjct: 315 LLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVANVRLQMKNFGI 374
Query: 465 KKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
+K G S IE DD+ +F+ K P S
Sbjct: 375 QKPSGASSIEVDDEVHEFTVFD-KSHPKS 402
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 146/317 (46%), Gaps = 24/317 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A K+F ++ D +NTI+ G ++ A L+ M + ++ S
Sbjct: 26 GELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSGYC 85
Query: 113 KA----CTRLLYRNMGF--CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
KA R+L+ M V I+ G+ ++++ F + +
Sbjct: 86 KAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQ----------MEEAG 135
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNV---MITGYAKQGEMEKAN 222
K D S+ A A G L + + + + +R S NV ++ YAK G++++A
Sbjct: 136 LKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRAL 195
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+FN + K+D+VSWN M+ G + G ++AL++F MR G RPD VT++++L AC G
Sbjct: 196 SVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAG 255
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTL 341
++ G + + V + H ++D+ + G ++ A + M + +V W TL
Sbjct: 256 FVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTL 315
Query: 342 IGGLAFH---GFAEESI 355
+G H G AEE +
Sbjct: 316 LGACRMHNAVGLAEEVL 332
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 174/529 (32%), Positives = 258/529 (48%), Gaps = 81/529 (15%)
Query: 24 IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQS 83
+ V G+ S++ LI + SV G ++ A ++F +I+ D + +I A++
Sbjct: 68 VHGCVLKVGYGSNTFIGTALIDAYSV--SGCVSMAREVFDEISSKDMVSWTGMIASYAEN 125
Query: 84 QNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVR 143
+A+ ++QM KPN FTF+ VLKAC L + G VH ++K +E + +V
Sbjct: 126 DCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVG 185
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------ 197
L+ + CGD + A F K DV+ WS + + +A+ G+ A +F +M
Sbjct: 186 VGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVI 245
Query: 198 PVR---------------------------------DLVSWNVMITGYAKQGEMEKANEL 224
P + D+ N ++ YAK G +E++ EL
Sbjct: 246 PNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMEL 305
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F + R+ VSWN +I YV G ++AL +F M + +VT S+L ACA L L
Sbjct: 306 FEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAAL 365
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
E+G +VHC G V GNALIDMYAKCGSI+ A +F + RD +W+ +I G
Sbjct: 366 ELGLQVHCLTAKTIYG-QDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICG 424
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
+ HG E+I MF M+ K +P E+TFVGVL ACS+ G+++EGK+YF M+ +Y IEP
Sbjct: 425 YSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEP 484
Query: 405 NIRHYG---------------------------------------VHGDVELGRLANKRL 425
+ HY +H DVELGR++ +R+
Sbjct: 485 CMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRV 544
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
L + + +VLLSNIYA W V VRK M +KK+PG S IE
Sbjct: 545 LELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIE 593
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/369 (29%), Positives = 185/369 (50%), Gaps = 42/369 (11%)
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F ++ E +T + T+I G AQS ++A L+ ++ + N F F+ VLK + +
Sbjct: 2 VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+G VHG ++K G+ N F+ +LI ++ G ++ A +FD + D+V+W+ + A
Sbjct: 62 AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121
Query: 181 YARRGELSMARSLFDEMPV---------------------------------------RD 201
YA S A F +M V RD
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
L ++ Y + G+ + A F ++PK DV+ W+ MIS + G +++ALE+F +MR
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSI 320
P+ T S+L A AD+ L++ K +H L +G++ V NAL+ YAKCG I
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHAL--KAGLSTDVFVSNALMACYAKCGCI 299
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
E+++E+F + DR+ +W+T+I G E ++++F M R +V+ TE+T+ +L AC
Sbjct: 300 EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRAC 359
Query: 381 SHAGKVEEG 389
+ +E G
Sbjct: 360 ATLAALELG 368
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 90/224 (40%), Gaps = 30/224 (13%)
Query: 9 SRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFV 63
S + + C L L+ Q+ L + D + LI Y+ G+I A MF
Sbjct: 353 SSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKC----GSIKDARFMFD 408
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
+ D +N II G + ++A+ ++ M++ KP++ TF VL AC+ N
Sbjct: 409 MLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACS-----NT 463
Query: 124 GFCVHGKIV------KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD--VVAWS 175
G GK YG E +++ G+L+ A V F D + V+ W
Sbjct: 464 GRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQA-VKFIEDIPFEPSVMIWR 522
Query: 176 SLTAGY-----ARRGELSMARSLFDEMPVRDLVSWNVMITGYAK 214
+L G +S R L E+ RD S ++ YA+
Sbjct: 523 ALLGACVIHNDVELGRISAQRVL--ELEPRDEASHVLLSNIYAR 564
>gi|255575758|ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531781|gb|EEF33600.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 152/446 (34%), Positives = 238/446 (53%), Gaps = 35/446 (7%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
N +L C N++ QI + + G A I +++ ++
Sbjct: 53 NHQLLQKLELSCINIKQFNQIHTQLIVLGLFQHPLAAGRYIKKLCNTYFNLLSHCVYLYD 112
Query: 64 KITEPDTFMYNTIIRGSAQSQN-PLDAV-FLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
I +PD F+ NTIIR N P A+ F Y +M + PN++TF ++K C +
Sbjct: 113 YIEQPDAFICNTIIRCFVSLNNDPFGALRFYYDKMIAKWVLPNRYTFPLLVKVCADIGSL 172
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
G H +VK+GFEF+ +VRNSL++ ++ CG + A +LF+ +D+V+W+S+ GY
Sbjct: 173 KEGQKAHACVVKFGFEFDAYVRNSLLHMYSACGRVLDARLLFESGFVLDLVSWNSMIIGY 232
Query: 182 ARRGELSMARSLFDEMP-------------------------------VRDLVSWNVMIT 210
+ G++ +AR LFDEMP RD+VSWN MI
Sbjct: 233 VKNGDIGLARELFDEMPERDAFSWNSMISGYVGAGDVEAAKKLFDNMPSRDVVSWNCMID 292
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDV 269
GYAK + A LFN++P R++VSWN M++ Y+ C + L++F+ M E RP+
Sbjct: 293 GYAKIRNVSVARWLFNQMPFRNIVSWNIMLALYLKCKNYGECLKLFDRMIEERELRPNKA 352
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
+++S+LTACA+ L++GK +H + D ++L AL+ MYAKCG ++ A +F
Sbjct: 353 SLMSVLTACANFRRLDLGKWIHSYIKDNEVESDELL-STALLTMYAKCGMMDFARHIFTK 411
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M + V +W+++I G A +G AE+++ F EM++ + P TFV VL ACSHA + EG
Sbjct: 412 MPHKSVVSWNSMIMGYAINGHAEKALETFLEMEKSSMMPNAATFVSVLSACSHAELLLEG 471
Query: 390 KKYFKLMRDEYNIEPNIRHYGVHGDV 415
YF LM+ +Y IEP + H G D+
Sbjct: 472 WWYFDLMQRKYKIEPKVEHCGCMVDL 497
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 2 RTNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSD---SSALRELIYSGSVVIPGAI 55
R N+ + C N R L K I + + N SD S+AL + Y+ G +
Sbjct: 348 RPNKASLMSVLTACANFRRLDLGKWIHSYIKDNEVESDELLSTALLTM-YAKC----GMM 402
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
++A +F K+ +N++I G A + + A+ + +MEK S+ PN TF VL AC
Sbjct: 403 DFARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEMEKSSMMPNAATFVSVLSAC 462
Query: 116 TR 117
+
Sbjct: 463 SH 464
>gi|359486281|ref|XP_003633424.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g45350, chloroplastic-like [Vitis vinifera]
Length = 704
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 169/514 (32%), Positives = 254/514 (49%), Gaps = 105/514 (20%)
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
+ ++F++N II+ + ++P + ++ M + + +KF+FS VLKAC+RL G
Sbjct: 78 QDNSFIWNAIIKSFSHKEDPREVFVIFNLMLESGVCVDKFSFSLVLKACSRLGLIKEGMQ 137
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD---------------- 170
+HG + K + F++N L+ + CG L LFD K D
Sbjct: 138 IHGLLGKMEIGSDVFLQNCLMCLYLRCGCLGIVRQLFDRMMKKDSVSFNSMIDGYVKHGM 197
Query: 171 -----------------VVAWSSLTAGYARRGE-LSMARSLFDEMPVRDLVSWNVMITGY 212
+++W+S+ + YAR E L +A LF+EMP +DL+SWN MI G
Sbjct: 198 VKSAWELFDVMPMEQKILISWNSMISEYARSEERLKVAWELFEEMPKKDLISWNSMINGC 257
Query: 213 AKQGEMEKANELFNEVPKR-------------------------------DVVSWNAMIS 241
K G+ME + LFN +PKR DV+S NAM++
Sbjct: 258 VKCGKMENDHHLFNRMPKRXVVSXANMVNGHAKLGEIDIARGLFVEMPEMDVISCNAMMA 317
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
YV G ++L+ F +M S D+ T+L L+A A LG + G +HC + D +
Sbjct: 318 RYVQNGYLMESLKNFHDMLSKELFLDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSL 377
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
++ L G ALID YAKCGSI+ A+ VF + ++ + W+ ++ GLA HG E + +F EM
Sbjct: 378 SEKL-GVALIDTYAKCGSIDNALSVFEDIDNKSIDHWNAILSGLAIHGLGEVAFELFMEM 436
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY-------GVHGD 414
++L V+P +ITF+GVL AC+HAG V+EG F+LM+ +EP ++HY G G
Sbjct: 437 EKLFVKPNDITFIGVLNACNHAGLVKEGLMCFELMKRVDKVEPKLQHYVCMVDILGQAGH 496
Query: 415 VE--------------------------------LGRLANKRLLNMRKDESGDYVLLSNI 442
VE +G K L+++ YVLLSNI
Sbjct: 497 VEETKKFVEKMSIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNLSSYVLLSNI 556
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
YA G WN V ++R +M D+KK PGCS IE +
Sbjct: 557 YAGFGIWNDVHRIRMMMKQRDLKKIPGCSQIELE 590
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 127/296 (42%), Gaps = 22/296 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I+ A +FV++ E D N ++ Q+ ++++ + M + + T L
Sbjct: 292 GEIDIARGLFVEMPEMDVISCNAMMARYVQNGYLMESLKNFHDMLSKELFLDNATLLITL 351
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A +L + + G +H I GF + + +LI +A CG ++ A +F+ +
Sbjct: 352 SAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDTYAKCGSIDNALSVFEDIDNKSID 411
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP-----VRDLVSWNVM----ITGYAKQGEMEKANE 223
W+++ +G A G +A LF EM D+ V+ G K+G M E
Sbjct: 412 HWNAILSGLAIHGLGEVAFELFMEMEKLFVKPNDITFIGVLNACNHAGLVKEGLM--CFE 469
Query: 224 LFNEVPKRD--VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
L V K + + + M+ G ++ + E+M P+DV +LL+AC +
Sbjct: 470 LMKRVDKVEPKLQHYVCMVDILGQAGHVEETKKFVEKMSI---EPNDVVWRTLLSACRNH 526
Query: 282 GDLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+ +G+ V H +D + + VL N +YA G + + M+ RD+
Sbjct: 527 ENFTIGEPVAKHLISVDSYNLSSYVLLSN----IYAGFGIWNDVHRIRMMMKQRDL 578
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 153/419 (36%), Positives = 226/419 (53%), Gaps = 49/419 (11%)
Query: 104 NKFTFSFVLKACTRL-----LYRNMGF---CVHGKIVKYGFEF-NRFVRNSLIYFHANCG 154
N F+ S ++A L R++G +H + +K GF + FVR +L+ +A G
Sbjct: 30 NSFSLSLAMQASAALSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTALVEAYAKAG 89
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK 214
+ A FD + DV + + A Y RGE++ AR +FD M RD+VSWN MI GYA
Sbjct: 90 RADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAV 149
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
GE++ A E+FN + RD SW++M+S Y +K ALE++ EMR+ PD TM+S+
Sbjct: 150 NGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSV 209
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD 334
L+AC+D+G L VG +VH ++ V G ALIDMYAKCG IE ++ VF M +D
Sbjct: 210 LSACSDMGALAVGAEVH-QFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKD 268
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK 394
V TWS++I GLA HGF +++++F M ++P E+TF+GVL++C+H G V +GKKYF
Sbjct: 269 VLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFS 328
Query: 395 LMRDEYNIEPNIRHYG---------------------------------------VHGDV 415
M + + P ++HYG ++ +V
Sbjct: 329 SMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNV 388
Query: 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
E+ A +L + G YVLLSNIYA W V ++R+ + I++ PG S IE
Sbjct: 389 EVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIE 447
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 127/295 (43%), Gaps = 22/295 (7%)
Query: 50 VIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFS 109
+ G ++ A ++F + + D F +++++ + + DA+ L+ +M + P+ T
Sbjct: 148 AVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMV 207
Query: 110 FVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
VL AC+ + +G VH + G E + + +LI +A CGD+ + +F
Sbjct: 208 SVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVK 267
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELF 225
DV+ WSS+ G A G A SLF M L V G G + + F
Sbjct: 268 DVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYF 327
Query: 226 NEV-------PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+ + PK V + M+ L G + E + +R + PD V +LL AC
Sbjct: 328 SSMSVVHGVTPK--VQHYGCMVD---LLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGAC 382
Query: 279 ADLGDLEVGKKVHCTL--LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
++EV ++ L LD + VL L ++YA+ S E E+ +R
Sbjct: 383 RIYKNVEVAEEAMAKLRVLDPHADGHYVL----LSNIYAQANSWEGVAEMRRTLR 433
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 166/486 (34%), Positives = 249/486 (51%), Gaps = 74/486 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G INYA +F ++++ D +NT+I + +A L+ +M+ ++ P++ ++
Sbjct: 163 GRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIV 222
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC R NM +NR + + LI + D +MD
Sbjct: 223 SACGRT--GNM-------------RYNRAIYDFLI----------------ENDVRMDTH 251
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
++L YA G + MA F +M VR+L M++GY+K G ++ A +F++ +D
Sbjct: 252 LLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKD 311
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH- 291
+V W MIS Y ++AL +FEEM G +PD VTMLS+++AC +LG L+ K VH
Sbjct: 312 LVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHR 371
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
T L+ V + NALI+MYAKCG ++ A +VF M R+V +WS++I A HG A
Sbjct: 372 YTHLNGLESVLPI--DNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEA 429
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
+S+++F +M++ V P E+TFVGVL CSH+G VEEGKK F M DEYNI P I HYG
Sbjct: 430 SDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGC 489
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
VHG++ELG LA KR+L + D
Sbjct: 490 MVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDH 549
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPN 492
G VL+SNIYA W+ V +R +M+ + K+ G S I+ + K+ ++L K
Sbjct: 550 DGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSH-EFLIGDKRHKQ 608
Query: 493 SGNLDT 498
S + T
Sbjct: 609 SNEIYT 614
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 178/552 (32%), Positives = 266/552 (48%), Gaps = 95/552 (17%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAH---KMFVKITE 67
L+KK L KQIQ+++ +G S + +P + N +F I
Sbjct: 14 LFKKHQTLEQCKQIQSIIVTSGLYSTQDNNTLFLTKLLQCVPFSQNQNTCLLLLFDTINT 73
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P+T + N +I A +P ++ Y ++ + ++P+K TF +LK ++ + +N F +
Sbjct: 74 PNTRLLNKMI---AACSHPHISLLCYAKLRQKGVQPDKHTFPLLLKTFSKSIAQN-PFMI 129
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
+ +I K GF+ + F+ N+LI AN G + +A +FD D VAW++L GY +
Sbjct: 130 YAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDCP 189
Query: 188 SMARSLFDEMPVRD----------------LVS------W---------NVMITGYA--- 213
A F +M +RD LV W V + GY
Sbjct: 190 GEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFSA 249
Query: 214 ------KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
K G E A ++FNE+P RDVV W +++GYV + AL F +M S P+
Sbjct: 250 LMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPN 309
Query: 268 DVTMLSLLTACADLGDLEVGKKVH----CTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
D T+ S+L+ACA +G L+ G+ VH C ++M V G AL+DMYAKCGSI+ A
Sbjct: 310 DFTLSSVLSACAQMGALDQGRLVHQYIECNKINMN-----VTLGTALVDMYAKCGSIDEA 364
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+ VF M ++V TW+ +I GLA HG A ++ +F M + ++P E+TFVGVL ACSH
Sbjct: 365 LRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSHG 424
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G VEEGK+ F+LM+ Y+++P + HYG
Sbjct: 425 GFVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPMKPSPGVLGA 484
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
VH E+G L+N + + SG Y LL+N+Y W +VRKLM +
Sbjct: 485 LFGACLVHKAFEMGEHIGNLLVNQQPNHSGSYALLANLYKMCQNWEAAAQVRKLMKGLRV 544
Query: 465 KKQPGCSLIEAD 476
K PG S IE D
Sbjct: 545 VKAPGYSRIEVD 556
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 170/530 (32%), Positives = 278/530 (52%), Gaps = 91/530 (17%)
Query: 15 CTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKIT 66
C L L Q+ ALV+ + +++D +Y GS +I G++ A ++F +
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTD-------VYMGSALIDMYSKCGSVACAEEVFSGMI 209
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
E + +N++I Q+ +A+ ++ +M ++P++ T + V+ AC L G
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H ++VK N+F R+ L+ G+A +D+ YA+ +
Sbjct: 270 IHARVVKT----NKF-RDDLVL----------------GNALVDM---------YAKCSK 299
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
++ AR +FD M +R++VS M++GYA+ ++ A +F+++ +R+VVSWNA+I+GY
Sbjct: 300 VNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQN 359
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL----DMTSGV- 301
G N++AL +F ++ P T +LL+ACA+L DL +G++ H +L + SG
Sbjct: 360 GENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAE 419
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ + GN+LIDMY KCGSIE VF M++RD +W+ +I G A +G+ E++ +FR+M
Sbjct: 420 SDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM 479
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
+P +T +GVL ACSHAG VEEG+ YF M +E+ + P HY
Sbjct: 480 LVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGC 538
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
VHG++E+G+ A ++LL + SG YVLLSN+
Sbjct: 539 LNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNM 598
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPN 492
YA G W V +VRKLM + KQPGCS IE + + + +L K P+
Sbjct: 599 YAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHV-FLVKDKSHPH 647
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 143/287 (49%), Gaps = 32/287 (11%)
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
PN F+ +L +C R VH +I+ F F++N LI + C L+ A
Sbjct: 13 PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDA--- 69
Query: 163 FDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222
R LFD MP R+ +WN +I+ K G +++A
Sbjct: 70 ----------------------------RKLFDRMPQRNTFTWNSLISVLTKSGFLDEAA 101
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
LF +P+ D SWN+M+SG+ +++LE F +M ++ + S L+ACA L
Sbjct: 102 RLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLM 161
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
DL +G +VH L+ + V G+ALIDMY+KCGS+ A EVF GM +R++ TW++LI
Sbjct: 162 DLNMGTQVH-ALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLI 220
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+G A E++ +F M + P E+T V+ AC+ ++EG
Sbjct: 221 TCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEG 267
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 162/449 (36%), Positives = 239/449 (53%), Gaps = 56/449 (12%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAIN-----YAHKMFV 63
+RL + +L+ LK + A + GF+ S Y S++I + + Y +F
Sbjct: 20 NRLLQSFNSLKQLKHVHAALLRLGFDQGS-------YLWSMIIRSSFDFNDTTYTRLIFN 72
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
+I EPD +YNT+IRG S +++ Y M K PN FTF FV+KAC RLL +
Sbjct: 73 QIKEPDVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLDFQL 132
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G +H +VK GF+ N FV SL+ +A CG ++ A + D + ++V+W+++ +GY
Sbjct: 133 GIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGYIG 192
Query: 184 RGELSMARSLFDEM--------------------PVRDLVS--W------------NVMI 209
G+ A LF M + DL + W NV +
Sbjct: 193 VGKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFV 252
Query: 210 TG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
T YAK G MEKA LF+ + +RD+VSW+AMI GY G+ K AL++F +M + G
Sbjct: 253 TTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDLFFKMLNAGL 312
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
+PD M+ L ACA LG LE+G L+D T + G ALIDMYAKCGS+ +A
Sbjct: 313 KPDHYAMVGFLCACARLGALELGDW-GSNLMDRTEFFTNHVLGTALIDMYAKCGSMAKAW 371
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
EVF G++ +D + W+ I GLA +G + + +F +M+R ++P TFVG+L C+HAG
Sbjct: 372 EVFKGIKGKDRAVWNAAISGLAMNGHEKAAFGLFGQMERFGIQPDGNTFVGLLCGCTHAG 431
Query: 385 KVEEGKKYFKLM----RDEYNIEPNIRHY 409
V+EG+KYF M R ++ NI+ Y
Sbjct: 432 LVDEGRKYFHSMGRSLRQDHIFLFNIQLY 460
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 7/221 (3%)
Query: 205 WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
W+++I + +FN++ + DVV +N MI G V +++E + MR G
Sbjct: 51 WSMIIRSSFDFNDTTYTRLIFNQIKEPDVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGF 110
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
P++ T ++ ACA L D ++G +H TL+ + +L+ +YAKCGSI+ A+
Sbjct: 111 LPNNFTFPFVIKACARLLDFQLGIMMH-TLVVKLGFDCNLFVNTSLVSLYAKCGSIDDAL 169
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
++ + + ++ +W+ +I G G E+I +FR M +RP T V VL AC G
Sbjct: 170 KMLDLIPESNIVSWTAIISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIG 229
Query: 385 KVEEGK---KYFK---LMRDEYNIEPNIRHYGVHGDVELGR 419
+ G+ +Y + R+ + + Y HG++E R
Sbjct: 230 DLANGEWIDRYITENVMARNVFVTTSLVDLYAKHGNMEKAR 270
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 241/460 (52%), Gaps = 73/460 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A ++F ++ + D + T+I G +A+ +Y M + + N+ ++
Sbjct: 481 GLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLV 540
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC RL G+ +HG +VK GF+ F++ ++I+F+A CG ++ A + F+ AK +
Sbjct: 541 SACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLE 600
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+W++L +G+ + + AR +FD+MP RD+ SW+ MI+GYA+ +
Sbjct: 601 SWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQ--------------- 645
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
++ ALE+F +M + G +P++VTM+S+ +A A LG L+ G+ H
Sbjct: 646 ----------------SRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHE 689
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHGF 350
+ + + + L ALIDMYAKCGSI A++ F +RD+ VS W+ +I GLA HG
Sbjct: 690 YICNESIPLNDNLRA-ALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGH 748
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
A + +F +MQR ++P ITF+GVL AC HAG VE G++ F++M+ YN+EP+I+HYG
Sbjct: 749 ASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYG 808
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
HGDV +G A + L +
Sbjct: 809 CMVDLLGRAGLLEEAEEMIRSMPMKADIVIWGTLLAACRTHGDVNIGERAAESLAGLAPS 868
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
G VLLSNIYA G W V VR+ + + +++ PGCS
Sbjct: 869 HGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERMPGCS 908
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 173/369 (46%), Gaps = 63/369 (17%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A K+F + + Y T+I G Q++ +A+ ++ M + PN T V+
Sbjct: 349 GQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVI 408
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASV-LFDGDAKMDV 171
AC+ G+I+ NC ++ ++ LF + V
Sbjct: 409 YACSHF----------GEIL-------------------NCRMIHAIAIKLF---VEGLV 436
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
+ ++L Y + AR LFD MP +LVSWNVM+ GYAK G ++ A ELF VP +
Sbjct: 437 LVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDK 496
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
DV+SW MI GY+L +AL M+ M G +++ +++L++AC L + G ++H
Sbjct: 497 DVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLH 556
Query: 292 ------------------------CTLLDMTS-----GVAKVLHG-NALIDMYAKCGSIE 321
C ++D+ G L NAL+ + K ++
Sbjct: 557 GMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVD 616
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
+A ++F M +RDV +WST+I G A + ++ +F +M ++P E+T V V A +
Sbjct: 617 QARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIA 676
Query: 382 HAGKVEEGK 390
G ++EG+
Sbjct: 677 TLGTLKEGR 685
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 174/374 (46%), Gaps = 79/374 (21%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H ++K G N F++NSLI YA+RG
Sbjct: 291 LHSLVLKLGLHSNTFIQNSLINM-------------------------------YAKRGS 319
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ A+ LFD P + +S N+M+ GYAK G+++ A +LF+ +P + VS+ MI G V
Sbjct: 320 IKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQN 379
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM--------- 297
++ALE+F++MRS G P+D+T+++++ AC+ G++ + +H + +
Sbjct: 380 ECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVS 439
Query: 298 ---------TSGVAK------------VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
SGV + ++ N +++ YAK G ++ A E+F + D+DV
Sbjct: 440 TNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVI 499
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+W T+I G E++ M+R M R + EI V ++ AC + +G + ++
Sbjct: 500 SWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMV 559
Query: 397 R----DEYN-IEPNIRH-YGVHGDVELGRLANKRLLNMRKDESG--DYVLLSNIYASRGE 448
D YN I+ I H Y G ++L L + E G D++ N S
Sbjct: 560 VKKGFDCYNFIQTTIIHFYAACGMMDLACL---------QFEVGAKDHLESWNALVSGFI 610
Query: 449 WNR-VEKVRKLMDD 461
NR V++ RK+ DD
Sbjct: 611 KNRMVDQARKIFDD 624
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
A++S C + Q ++ + +G + SL+ A G ++ + LL
Sbjct: 274 ALVSALKYCSSSSQGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQ-----LLFD 328
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
+ N ++ YAK G ++ A ++F M D+ +++T+I GL + E++ +
Sbjct: 329 ACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEV 388
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKV 386
F++M+ V P ++T V V+ ACSH G++
Sbjct: 389 FKDMRSDGVVPNDLTLVNVIYACSHFGEI 417
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 164/520 (31%), Positives = 257/520 (49%), Gaps = 77/520 (14%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIY--SGSVVIPGAINYAHK 60
++ R L +KC +++ LKQ A V G +++ AL ++ S ++ YA +
Sbjct: 3 SSTKRCLVLLEKCKSMKHLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACR 62
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I P +YNT+I+ + A+ ++ +M + +KP+ +T +VLKAC
Sbjct: 63 VFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHD 122
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+ G +HG K G F+ +V NSL+ A
Sbjct: 123 CSFGKMIHGYSSKLGLVFDIYVGNSLM-------------------------------AM 151
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
Y G++ AR +FDE+P ++VSW+VMI+GYAK G+++ A F+E P++D W AMI
Sbjct: 152 YCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMI 211
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
SGYV K++L +F M+ PD+ +S+L+ACA LG LE+G +H L +
Sbjct: 212 SGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLV 271
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
V +L+DMYAKCG++E A +F M RDV W+ +I G+A HG + ++ +F +
Sbjct: 272 PLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYD 331
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------- 411
M+++ V+P +ITF+ V ACS++G EG M YNI P HYG
Sbjct: 332 MEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKMCSVYNIVPKSEHYGCLVDLLSRAG 391
Query: 412 ----------------------------------HGDVELGRLANKRLLNMRKD-ESGDY 436
HG+ +L LA +++L + SG Y
Sbjct: 392 LFEEAMVMIRKITNSWNGSEETLAWRAFLSACCNHGETQLAELAAEKVLQLDNHIHSGVY 451
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
VLLSN+YA+ G+ + +VR +M K PGCS +E D
Sbjct: 452 VLLSNLYAASGKHSDARRVRDMMKIKGTNKAPGCSSVEID 491
>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
Length = 702
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 159/488 (32%), Positives = 254/488 (52%), Gaps = 63/488 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A K F + +P+ + T++ G A++ N L++ L+ QM +I S +
Sbjct: 178 GDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYV 237
Query: 113 KAC----TRLLYRNM-------------GFCVHGKIVKYGFEFNRF------VRNSLIYF 149
+ C L+ M G+ GK+ + N + ++I
Sbjct: 238 QRCEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISG 297
Query: 150 HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMI 209
+ C ++ A FD DVV W+++ AGYA G ++ A L M +D+V+WN MI
Sbjct: 298 YIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMI 357
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
+ YA+ G+M++A ++F E+ +RD+VSWN++I+G++L G N AL+ F M G++PD +
Sbjct: 358 SCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQL 417
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
+ L++CA + L+VG ++H ++ + ++ NALI MYAKCG I A VF G
Sbjct: 418 SFACGLSSCATIAALQVGNQLHQVVVK-GGYLNYLVVNNALITMYAKCGRILEAGLVFNG 476
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+ DV +W++LIGG A +G+ +E++ +F EM + P E+TF+G+L AC+HAG V+ G
Sbjct: 477 ICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHG 536
Query: 390 KKYFKLMRDEYNIEPNIRHYG--------------------------------------- 410
K FK M Y IEP HY
Sbjct: 537 LKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACR 596
Query: 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470
HG++ELGRLA +L ++ +YVLLSNI+A WN V++VR LM+ S K+PGC
Sbjct: 597 AHGNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTVKEPGC 656
Query: 471 SLIEADDK 478
S +E ++
Sbjct: 657 SWVEVRNQ 664
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 111/417 (26%), Positives = 195/417 (46%), Gaps = 60/417 (14%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G IN A +F K+ + +NT++ G + +A L+ I P + FS+ L
Sbjct: 20 GRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFV------IMPRRDLFSWTL 73
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG---DAKM 169
M C + RN G++ A LFD +
Sbjct: 74 ----------MITC--------------YTRN---------GEVEKARELFDSLPCSYRK 100
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
V W+++ +GY ++G ++ A+ LFDEMPV++L+SWN M+ GY + +M E FNE+
Sbjct: 101 GVACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMD 160
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
+RDVVSWN M+ G++ G A + F+E ++P+ V+ +++L+ A G++ ++
Sbjct: 161 ERDVVSWNLMVDGFIQVGDLDSAWKFFQET----QKPNVVSWVTMLSGFARNGNILESRR 216
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
L D ++ NA+I Y + I+ A +F M +RD +W+T+I G G
Sbjct: 217 ----LFDQMPS-RNIVSWNAMISAYVQRCEIDEASRLFEEMPERDSVSWTTMINGYVRIG 271
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM--RDEYNIEPNIR 407
+E+ + EM + + + + C+ KV+E +++F + D I
Sbjct: 272 KLDEARELLNEMPYRNI-GAQTAMISGYIQCN---KVDEARRFFDEIGTWDVVCWNAMIA 327
Query: 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
Y HG + +KR++N KD ++S YA G+ +R K+ + M + D+
Sbjct: 328 GYAHHGRINEALCLSKRMVN--KDMVTWNTMIS-CYAQVGQMDRAVKIFEEMGERDL 381
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 10/230 (4%)
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
A+ + V ++S+ + YA+ G ++ AR+LFD+MP R+LVSWN M++GY G+ ++A +LF
Sbjct: 2 AEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFV 61
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+P+RD+ SW MI+ Y G ++A E+F+ + R ++++ G +
Sbjct: 62 IMPRRDLFSWTLMITCYTRNGEVEKARELFDSL-PCSYRKGVACWNAMISGYVKKGRVNE 120
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
K+ L D V ++ N+++ Y + + +E F M +RDV +W+ ++ G
Sbjct: 121 AKR----LFDEMP-VKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFI 175
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
G + + F+E Q +P +++V +L + G + E ++ F M
Sbjct: 176 QVGDLDSAWKFFQETQ----KPNVVSWVTMLSGFARNGNILESRRLFDQM 221
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 161/472 (34%), Positives = 240/472 (50%), Gaps = 82/472 (17%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++++ +F + P+ F++ II A A+ Y+QM I+PN FT S +L
Sbjct: 69 GHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLL 128
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KACT R VH +K+G + +V L+ DA
Sbjct: 129 KACTLHPAR----AVHSHAIKFGLSSHLYVSTGLV------------------DA----- 161
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
YAR G+++ A+ LFD MP R LVS+ M+T YAK G + +A LF + +D
Sbjct: 162 --------YARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKD 213
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-------RPDDVTMLSLLTACADLGDLE 285
VV WN MI GY G +AL F +M + RP+++T++++L++C +G LE
Sbjct: 214 VVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALE 273
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
GK VH + ++ V G AL+DMY KCGS+E A +VF M +DV W+++I G
Sbjct: 274 CGKWVH-SYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGY 332
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
HGF++E++ +F EM + V+P++ITFV VL AC+HAG V +G + F M+D Y +EP
Sbjct: 333 GIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPK 392
Query: 406 IRHYG---------------------------------------VHGDVELGRLANKRLL 426
+ HYG +H +V LG + L+
Sbjct: 393 VEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILV 452
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ SG YVLLSN+YA+ W V KVR +M S ++K+PGCS IE ++
Sbjct: 453 SNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNR 504
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 97/238 (40%), Gaps = 13/238 (5%)
Query: 177 LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW 236
L YA G L + +LF P ++ W +I +A A ++++ +
Sbjct: 61 LQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPN 120
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
+S + A + G L+ A A GD+ +K L D
Sbjct: 121 AFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQK----LFD 176
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ V + A++ YAK G + A +F GM +DV W+ +I G A HG E++
Sbjct: 177 AMPERSLVSY-TAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALV 235
Query: 357 MFRE-------MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
FR+ KVRP EIT V VL +C G +E GK + + I+ N+R
Sbjct: 236 FFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENN-GIKVNVR 292
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 173/572 (30%), Positives = 267/572 (46%), Gaps = 104/572 (18%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP-- 68
L KC +LR+ KQI A L + + +V+ A N+ K + P
Sbjct: 15 LIHKCNDLRSFKQIHA-----------HLLTSALVTNDLVVTKAANFLGKHITDVHYPCN 63
Query: 69 ---------DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
+F N +I G A Q P A+ +Y + P+ +TF VLK+C +
Sbjct: 64 FLKQFDWSLSSFPCNLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAK-- 121
Query: 120 YRNMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+ +G H VK G + +V+N+L++ ++ CGD A +F+ DVV+W+ L
Sbjct: 122 FSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGL 181
Query: 178 TAGYARRGELSMARSLFDEMPVR------------------------------------D 201
+GY + G + A SLF M V +
Sbjct: 182 ISGYVKTGLFNEAISLFLRMNVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEE 241
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
LV N ++ Y K + A ++F+E+P++D++SW +MI G V C +++L++F +M++
Sbjct: 242 LVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQA 301
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
G PD V + S+L+ACA LG L+ G+ VH +D V G L+DMYAKCG I+
Sbjct: 302 SGFEPDGVILTSVLSACASLGLLDCGRWVH-EYIDCHRIKWDVHIGTTLVDMYAKCGCID 360
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A +F GM +++ TW+ IGGLA +G+ +E++ F ++ RP E+TF+ V AC
Sbjct: 361 MAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACC 420
Query: 382 HAGKVEEGKKYFKLMRDE-YNIEPNIRHYG------------------------------ 410
H G V+EG+KYF M YN+ P + HYG
Sbjct: 421 HNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQI 480
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+G+V + K L N+ +SG YVLLSN+YA+ +W V VR+LM
Sbjct: 481 LGALLSSRNTYGNVGFTQEMLKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQ 540
Query: 462 SDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
I K PG S+I D + ++L P S
Sbjct: 541 KGISKAPGSSIIRVDGMSH-EFLVGDNSHPQS 571
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 161/473 (34%), Positives = 248/473 (52%), Gaps = 84/473 (17%)
Query: 55 INYAHKMF-VKITEPDTFMYNTIIRGSAQSQNPLD---AVFLYTQMEKCSIKPNKFTFSF 110
I+YA+ +F ++ + ++F++N IIR + +P + +Y +M + P+ TF F
Sbjct: 7 ISYANPIFHIRHLKLESFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPF 66
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
+L + ++ +G H +I+ +G + + FVR SL+ +++CGDL++A +FD D
Sbjct: 67 LLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKD 126
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
+ AW+S+ YA+ G ++ AR LFDEMP R+++SW+ +I GY
Sbjct: 127 LPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGY------------------ 168
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMR-----SVGERPDDVTMLSLLTACADLGDLE 285
V+CG K+AL++F EM+ V P+ TM ++L+AC LG LE
Sbjct: 169 -------------VMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALE 215
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIG 343
GK VH + +D ++ G ALIDMYAKCGS+ERA VF LG + +DV +S +I
Sbjct: 216 QGKWVH-SYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSK-KDVKAYSAMIC 273
Query: 344 GLAFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
LA +G +E +F EM + P +TFVG+L AC H G + +GK YFK+M +E+ I
Sbjct: 274 CLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGI 333
Query: 403 EPNIRHYGVH---------------------------------------GDVELGRLANK 423
P+I+HYG GD++ A K
Sbjct: 334 TPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALK 393
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
RL+ + SG YVLLSN+YA G W V+++R M+ IKK PGCS +E +
Sbjct: 394 RLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVE 446
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 30/293 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-----KCSIKPNKFT 107
G IN+A K+F ++ E + ++ +I G +A+ L+ +M+ + + PNKFT
Sbjct: 141 GLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFT 200
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-D 166
S VL AC RL G VH I KYG E + + +LI +A CG L A +FD
Sbjct: 201 MSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALG 260
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV-----MITGYAKQGEMEKA 221
+K DV A+S++ A G +F EM + ++ N ++ +G + K
Sbjct: 261 SKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKG 320
Query: 222 NELFNEVPKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
F + + + + M+ Y G+ K+A E F + S+ PD + SLL+
Sbjct: 321 KSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEA-ESF--IASMPMEPDVLIWGSLLS 377
Query: 277 ACADLGDLEVGKKVHCTLLD---MTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
LGD++ + L++ M SG A VL L ++YAK G R IEV
Sbjct: 378 GSRMLGDIKTCEGALKRLIELDPMNSG-AYVL----LSNVYAKTG---RWIEV 422
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 150/481 (31%), Positives = 250/481 (51%), Gaps = 76/481 (15%)
Query: 44 IYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK- 102
+Y+ S+ +P A K+F ++ + D + T++ G A+ P +A ++ +M
Sbjct: 175 MYASSMSLPDA----RKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGW 230
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
PN+ T A ++ +G VH +V+ G + + N+L+ CG + +A
Sbjct: 231 PNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASA--- 287
Query: 163 FDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222
+ +FD MP++D+ SW M++ YAK G++E A
Sbjct: 288 ----------------------------KEIFDGMPIKDVYSWTSMVSAYAKCGDLENAG 319
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+LF E+P R+ VSW+ M++ Y + ++A+ +F +M + G P D T++S+L+ACA LG
Sbjct: 320 KLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLG 379
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
L+VG+ ++ + V NA IDM+AKCG + A +F M D++V +W+T+I
Sbjct: 380 CLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMI 439
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
A HG +EE++ +F++ + + + P EIT++GVL ACSH+G V EG+ +FK M+ Y I
Sbjct: 440 VAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGI 499
Query: 403 EPNIRHYG---------------------------------------VHGDVELGRLANK 423
EP HY +HG+VE+G+ A
Sbjct: 500 EPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAAD 559
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQY 483
+L+ + +SG YVL+S IYAS+ +W +V+ +R +M D +KK PGCS IE D K F ++
Sbjct: 560 KLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGK-FHEF 618
Query: 484 L 484
L
Sbjct: 619 L 619
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 106/443 (23%), Positives = 187/443 (42%), Gaps = 104/443 (23%)
Query: 3 TNR-----HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINY 57
TNR H L + C + R L Q+QAL+T++G + L+ ++ P + +
Sbjct: 24 TNRNLVVTHPLLSLLESCASFRRLLQLQALLTVSGLAAHRFPASRLLAFCALSDPPRLAH 83
Query: 58 AHKMFVKITE-PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
A + + E P+ +M T++RG ++ P A+ L+ ++ + + + T F +KA T
Sbjct: 84 AAAVLAQCAEGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAAT 143
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNR-FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+ +H K GF V N+L++
Sbjct: 144 T--SSSPAEAIHCVAFKRGFIGQSVLVGNALVHM-------------------------- 175
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
YA L AR LFDEM RD+VSW ++ GYA+ G ++A +F +
Sbjct: 176 -----YASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRM------- 223
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
+++G G P++VT+++ +A +G L +G+ VH ++
Sbjct: 224 ---VVAG--------------------GGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVV 260
Query: 296 DMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG----- 349
+ SGV ++ NAL+DM+ KCG + A E+F GM +DV +W++++ A G
Sbjct: 261 E--SGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENA 318
Query: 350 --------------------------FAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
EE++ +F +M V P + T V VL AC+
Sbjct: 319 GKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQL 378
Query: 384 GKVEEGKKYFKLMRDEYNIEPNI 406
G ++ G+ + + +E +
Sbjct: 379 GCLDVGRCLYDAYIVSHKVELTV 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
M+ G++ G AL +F R + +R P D + A + +HC
Sbjct: 103 MMRGFLRAGKPAHALALFR--RVLRDRLPADARTIVFAVKAATTSS-SPAEAIHCVAFKR 159
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
VL GNAL+ MYA S+ A ++F M DRDV +W+TL+ G A G +E+
Sbjct: 160 GFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEA--- 216
Query: 358 FREMQRLKVR----PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
+R R+ V P E+T V A G + G+ M + +E +R
Sbjct: 217 WRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGR-----MVHQCVVESGVR 265
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 167/528 (31%), Positives = 270/528 (51%), Gaps = 83/528 (15%)
Query: 2 RTNRHRSSRLW---KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP-GAINY 57
R++R R ++ K C + R L + A + ++GF+ + L L+ S+ I G++
Sbjct: 21 RSSRVRQQFIFSVLKSCVSFRNLAKTHAQIVVSGFSQKNYILNHLL---SLYISFGSLGS 77
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F IT P T ++N II+G +S+ ++ L+ +M ++ N FT+SF+L AC R
Sbjct: 78 AQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVR 137
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
G +HG+++ G+ N +VR +LI +AN GD GD
Sbjct: 138 SRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGD--------GGDF---------- 179
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
+L A LFDEMP ++V WN ++ GY ++G+ + A ++F+E+P+R+V +W
Sbjct: 180 --------DLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWT 231
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC----T 293
M++G+ G K AL +F++MR G D V +++ L+ACA+LGDL +GK +H T
Sbjct: 232 IMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERT 291
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
V L+ NALI MYA CG+++ A ++F + R+ +WS++I G A G E
Sbjct: 292 WRSRHLPVLVSLN-NALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVE 350
Query: 354 SIAMFREM---QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
+I +F+ M + +VRP EITF+G L ACSHAG + +G + F+ M + + P I HYG
Sbjct: 351 AIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYG 410
Query: 411 ---------------------------------------VHGDVELGRLANKRL---LNM 428
+H + E+ K L ++
Sbjct: 411 CMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKHLSFEIDP 470
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+G ++LL+N+YA+ G W VR+ M D +KK G S IE +
Sbjct: 471 NNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEIN 518
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 174/578 (30%), Positives = 267/578 (46%), Gaps = 113/578 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L K C ++ LKQIQA + G D L +L+ G NYA+++F I P
Sbjct: 14 LLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSL 73
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F+YN +I+ + + A+ L+ Q+ + + P+ +T+ +VLK + G +H
Sbjct: 74 FIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAF 133
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+VK G EF+ +V NSL+ +A G + + +F+ + D V+W+ + +GY R A
Sbjct: 134 VVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEA 193
Query: 191 RSLFDEMP---------------------VRDL------------------VSWNVMITG 211
++ M +R+L + N ++
Sbjct: 194 VDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGNALLDM 253
Query: 212 YAKQGEMEKANELFNEV-------------------------------PKRDVVSWNAMI 240
Y K G + A E+F+ + P RDVV W AMI
Sbjct: 254 YCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMI 313
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+GYV + A+ +F EM+ G PD +++LLT CA LG LE GK +H +D
Sbjct: 314 NGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIH-NYIDENRI 372
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ ALI+MYAKCG IE+++E+F G++D D ++W+++I GLA +G E++ +F
Sbjct: 373 KMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEA 432
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
MQ ++P +ITFV VL AC HAG VEEG+K F M Y+IEPN+ HYG
Sbjct: 433 MQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAG 492
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
+G++++G L ++ +S + L
Sbjct: 493 LLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTL 552
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
L++IYAS W V KVR M D IKK PG S IE D
Sbjct: 553 LASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVD 590
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 158/538 (29%), Positives = 268/538 (49%), Gaps = 89/538 (16%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSV----VIPGAINYAHKMFVKITEPDTFMYNTII 77
KQ+ + V G +SD LI GS+ V I AH+ F+ + ++N ++
Sbjct: 334 KQLHSYVIKMGMSSD------LIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVML 387
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
Q N ++ +++ QM+ + PN++T+ +L+ CT L ++G +H +++K GF+
Sbjct: 388 VAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQ 447
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
FN +V + LI +A G+L+TA + + DVV+W+++ AGY + + A LF EM
Sbjct: 448 FNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEM 507
Query: 198 P---------------------------------------VRDLVSWNVMITGYAKQGEM 218
DL N +++ YA+ G
Sbjct: 508 ENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRA 567
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+ A F ++ +D +SWNA+ISG+ G ++AL++F +M G + T S ++A
Sbjct: 568 QDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSAT 627
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
A+ +++ GK++H ++ T ++ N LI +Y+KCGSIE A F M +++V +W
Sbjct: 628 ANTANIKQGKQIHAMMIK-TGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSW 686
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+ +I G + HG+ E++++F EM++L + P +TFVGVL ACSH G V EG YF+ M
Sbjct: 687 NAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSK 746
Query: 399 EYNIEPNIRHY---------------------------------------GVHGDVELGR 419
E+ + P HY VH ++E+G
Sbjct: 747 EHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGE 806
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
A + LL + ++S YVLLSN+YA G+W+ ++ R++M D +KK+PG S IE +
Sbjct: 807 FAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKN 864
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 120/474 (25%), Positives = 231/474 (48%), Gaps = 54/474 (11%)
Query: 2 RTNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYA 58
R N L++ C N +L K++ A + +GF+ + LI + G ++ A
Sbjct: 7 RANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLI--DIYLAHGEVDNA 64
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT-- 116
K+F I + +N +I G + + L++ M ++ P++ TF+ VL+AC+
Sbjct: 65 IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
+ ++ + +H KI+ +GF + V N LI ++ G ++ A ++F+ D V+W +
Sbjct: 125 KAPFQ-VTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVA 183
Query: 177 LTAGYARRGELSMARSLFDEMPVRD------------------------------LVSW- 205
+ +G ++ G A LF +M +V W
Sbjct: 184 MISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWG 243
Query: 206 --------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
N ++T Y++ G + A ++F+++ +RD +S+N++ISG G + +AL++FE
Sbjct: 244 LSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFE 303
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
+M+ +PD VT+ SLL+ACA +G GK++H ++ M ++ G +L+D+Y KC
Sbjct: 304 KMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEG-SLLDLYVKC 362
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
IE A E FL +V W+ ++ G ES +F +MQ + P + T+ +L
Sbjct: 363 FDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSIL 422
Query: 378 VACSHAGKVEEGKK-YFKLMRD--EYNI---EPNIRHYGVHGDVELGRLANKRL 425
C+ G ++ G++ + ++++ ++N+ I Y HG+++ R +RL
Sbjct: 423 RTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRL 476
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 18/180 (10%)
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M G R + T L L C + G L KK+H + VL G+ LID+Y G
Sbjct: 1 MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVL-GSRLIDIYLAHG 59
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
++ AI++F + +VS W+ +I GL A + + +F M V P E TF VL
Sbjct: 60 EVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLR 119
Query: 379 ACS------------HAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426
ACS HA + G L+ + P I Y +G V+L +L +RL
Sbjct: 120 ACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCN-----PLIDLYSKNGHVDLAKLVFERLF 174
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 166/481 (34%), Positives = 265/481 (55%), Gaps = 65/481 (13%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNK 105
G + I+ A K+F ++ + +NT+I G AQ+ A++L+ +M E+ + N
Sbjct: 123 GGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN- 181
Query: 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA------NCGDLNTA 159
T +L C G+I + F+R +I + A G ++ A
Sbjct: 182 -TVMSMLAQC-------------GRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEA 227
Query: 160 SVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
+LFD + +VV+W+++ GYA+ L A LF+ MP RDL SWN MITG + G++
Sbjct: 228 RLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLR 287
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV-GERPDDVTMLSLLTAC 278
+A +LFNE+PK++V+SW MI+G V G +++AL++F M S G +P+ T +S+L AC
Sbjct: 288 RARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGAC 347
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL-GM-RDRDVS 336
++L L G++VH ++ T +ALI+MY+KCG + A ++F GM RD+
Sbjct: 348 SNLAGLGEGQQVH-QIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLV 406
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK-- 394
+W+ +I A HG+ +E+I F+EM++ +P ++T+VG+L ACSHAG VEEG KYF
Sbjct: 407 SWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDEL 466
Query: 395 ------LMRDEY------------------------NIEPNIRHYG-------VHGDVEL 417
L+R+++ +P+ R +G VH +V++
Sbjct: 467 VKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKI 526
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
G+ A K+LL + + +G Y+LLSNIYAS G+W +VR M D +KKQPGCS IE +
Sbjct: 527 GKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGN 586
Query: 478 K 478
+
Sbjct: 587 R 587
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 145/329 (44%), Gaps = 73/329 (22%)
Query: 140 RFVRNSLIYFHANCGDLNTASVL-----FDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
+ +R Y + + D TA + F D + W + ++ G + AR LF
Sbjct: 18 KLLRIPGFYLYHSINDYRTAKISIPRKDFTVDGNVARCNW--MITNLSKDGRIMEARRLF 75
Query: 195 DEMPVRDLVSWNVMITGYAKQGEMEK--------------------------------AN 222
DEM D+++W +I+GY K G +E+ A
Sbjct: 76 DEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAE 135
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+LFNE+P ++VVSWN MI GY G A+ +FE+M ER + V+ ++++ A G
Sbjct: 136 KLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM---PER-NVVSWNTVMSMLAQCG 191
Query: 283 DLEVGKKVH--------CTLLDMTSGVAK------------------VLHGNALIDMYAK 316
+E +++ + M +G++K V+ NA+I YA+
Sbjct: 192 RIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQ 251
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
++ A+++F M +RD+ +W+T+I GL +G + +F EM + V I++ +
Sbjct: 252 NLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNV----ISWTTM 307
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
+ C G+ EE K F M +PN
Sbjct: 308 ITGCVQEGESEEALKIFSRMLSTNGAKPN 336
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/481 (32%), Positives = 236/481 (49%), Gaps = 76/481 (15%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF-TFSFVLKAC 115
YA +F ++ PD F+ ++R + +Q PL +++ + + F F+F A
Sbjct: 90 YALNVFSAVSPPDPFLAAALLRFAFLTQPPLLPFRVFSHLRRAHGAELPFLPFAFSTLAK 149
Query: 116 TRLLYRNMGFCVHGKIVKY---GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+ R++ V GF+ +RFV NSLI + CGD+ A
Sbjct: 150 SATASRSLPAAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAA------------- 196
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
R +FDEM +D++SW ++ Y + G+M A E+F P +D
Sbjct: 197 ------------------RKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKD 238
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+V+W AM++GY M +ALE+F+ M +G D+V++ ++ACA LG L V
Sbjct: 239 MVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQ- 297
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ + T V+ G+ L+DMYAKCG I+ A +VF GM++++V T+S++I GLA HG A
Sbjct: 298 EIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRAS 357
Query: 353 ESIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
E+IA+F+EM R V P +TF+GVL ACSHAG V EG+ YF M+D+Y I P+ HY
Sbjct: 358 EAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYAC 417
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+HG E+ ++ + L + +
Sbjct: 418 MVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPES 477
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPN 492
G+YVLLSNI AS G+W V KVR LM +KK P SL E D Q+ P
Sbjct: 478 IGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPR 537
Query: 493 S 493
+
Sbjct: 538 T 538
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 162/511 (31%), Positives = 265/511 (51%), Gaps = 62/511 (12%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP--DTFMYNTIIR 78
++++ A V G + + A L+ + +++ + + ++F I +P D F+ NT++R
Sbjct: 368 VRELHAQVLKQGLHLNPRAAARLVSAYALLR--LLPSSRRVFDAIRDPHADAFLANTMLR 425
Query: 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEF 138
A P DA+ ++ M + + FT+SF++KA + + VH +VK G
Sbjct: 426 AYALGGAPRDALAAFSAMPR----RDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVE 480
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
+ FV N+LI ++ G + A +FD + DVV+W++ A R GEL+ AR LFDEMP
Sbjct: 481 DTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMP 540
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
+D VSWN ++ GY K GE+E A ELF +P+R+VVSW+ M+SGY G + A +F++
Sbjct: 541 EKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDK 600
Query: 259 ------------MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
M+ D ++S+L ACA+ G L +GK++H + G + +
Sbjct: 601 MPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHV- 659
Query: 307 GNALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
NALIDM+ KCG + RA VF +D +W+++IGG A HG ++++ +F +M++
Sbjct: 660 CNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQG 719
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
P +T + VL AC+H G V+EG++YF M +Y I P I HYG
Sbjct: 720 FNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEA 779
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+H +VE +A L ++ +G+Y +LSNIYA
Sbjct: 780 VDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEA 839
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
G+W+ + K R M + +K G S +E ++
Sbjct: 840 GQWSDMAKARMQMKGTGSQKTAGSSWVELNE 870
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/454 (35%), Positives = 235/454 (51%), Gaps = 73/454 (16%)
Query: 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
M + ++ P+ +TF VLKAC +G VHG+ V+ G + + F RN+LI F+ GD
Sbjct: 1 MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 60
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA------------------------- 190
+ +FD + D+V+W+S+ AGY GE+ +A
Sbjct: 61 CRSGRKVFDHGVR-DLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEM 119
Query: 191 -------RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
R LFD+MP RDLV WN MI GYA+ G M++A LF E+P+R+V+SW+ +I GY
Sbjct: 120 AGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGY 179
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
V G +ALE F+ M G +PD V + + ACA LG LE G+ +H + L+ +
Sbjct: 180 VRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLH-SYLEKKKVLFD 238
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
V+ ALIDMY KCG ++ A +F M + V TW+ +I GL HG+ ++I +F +M+
Sbjct: 239 VVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMET 298
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------ 411
+ +++ + VL +C+HAG V EG F M + +EP + HYG
Sbjct: 299 ERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVD 358
Query: 412 ---------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
H VEL L+ +RL ++ D+SG YVLLSNIYA
Sbjct: 359 QARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYA 418
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G W+ V ++RKLM +KK G S+IE D +
Sbjct: 419 DEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQ 452
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/476 (34%), Positives = 244/476 (51%), Gaps = 90/476 (18%)
Query: 55 INYAHKMF-VKITEPDTFMYNTIIRG------SAQSQNPLDAVFLYTQMEKCSIKPNKFT 107
I YA+ +F ++ + ++F++N IIR S Q +P+ +Y +M + P+ T
Sbjct: 8 IAYANPIFHIRHLKLESFLWNIIIRAIVHNVSSPQRHSPIS---VYLRMRNHRVSPDFHT 64
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
F F+L + L+ +G H +I+ +G + + FVR SL+ +++CGDL +A +FD
Sbjct: 65 FPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSG 124
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
D+ AW+S+ YA+ G + AR LFDEMP R+++SW+ +I GY
Sbjct: 125 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGY--------------- 169
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR-----SVGERPDDVTMLSLLTACADLG 282
V+CG K+AL++F EM+ RP++ TM ++L+AC LG
Sbjct: 170 ----------------VMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWST 340
LE GK VH +D ++ G ALIDMYAKCGS+ERA VF LG + +DV +S
Sbjct: 214 ALEQGKWVH-AYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK-KDVKAYSA 271
Query: 341 LIGGLAFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+I LA +G +E +F EM + P +TFVG+L AC H G + EGK YFK+M +E
Sbjct: 272 MICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEE 331
Query: 400 YNIEPNIRHYGVH---------------------------------------GDVELGRL 420
+ I P+I+HYG GD++
Sbjct: 332 FGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEG 391
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
A KRL+ + SG YVLLSN+YA G W V+ +R M+ I K PGCS +E +
Sbjct: 392 ALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVE 447
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/510 (30%), Positives = 271/510 (53%), Gaps = 88/510 (17%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
+R RS+ L T +Q+LV++ + R+L+ S ++ AH++F
Sbjct: 9 SRSRSAPLQAATA---TAAHVQSLVSL--LLKHQAKRRQLLQIHSQLV------AHQVFD 57
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
+ P ++ +++ + P +A+ L+ + ++ + + F F L+AC L +
Sbjct: 58 RRPTP----WHALLKAYSHGPFPQEALNLFRDAHR-NMADDTYAFMFSLRACAGLAWPWT 112
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G +HG +++ GFEF+ +V SLI + CG L DA+M
Sbjct: 113 GAQLHGLVIRKGFEFHAYVHTSLINTYVVCGCLV--------DARMA------------- 151
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
FDEMPV+++VSWNVMITG+A +GE+E A LF +P R+VVSW +I GY
Sbjct: 152 ----------FDEMPVKNVVSWNVMITGFAGRGEIEYARLLFERMPSRNVVSWTGLIDGY 201
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
+ +A+ + M + G P ++T+L+++ A +D+G + +G+ +H + V
Sbjct: 202 TRSCHSVEAVALLRRMMAEGISPTEITVLAVVPAISDIGRILMGETLH-GYCEKNGLVLD 260
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
+ GN+LID+YAK GSI+ +++VF GM + R++ +W+++I G A HG + E++ +F EM+
Sbjct: 261 IRVGNSLIDLYAKIGSIQSSLKVFHGMLNRRNLVSWTSIISGFAMHGLSTEAVELFAEMR 320
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
R +RP +TF+ VL ACSH G VE+G ++FK M EYNI P I+H+G
Sbjct: 321 RSGIRPNRVTFLSVLNACSHGGLVEQGVEFFKSMVYEYNINPEIKHFGCIIDMLGRAGRL 380
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
+G+VE+G+ A K++L+ ++ GD+V++SN+
Sbjct: 381 CEAEQVIGGLPMEVNSIVWRTLLACCSKYGEVEMGKRAMKKILHTERESGGDFVVVSNML 440
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
G ++ E+ RKL+D+ + K PG +L+
Sbjct: 441 TELGRFSDAERSRKLLDERNAVKVPGLALV 470
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/450 (32%), Positives = 241/450 (53%), Gaps = 72/450 (16%)
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+ + + F +N++I A+S + ++A+ ++ M K S+KPN+ TF +K+C+ LL + G
Sbjct: 36 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
H + + +GFE + FV ++L+ ++ CG+L A LFD + ++V+W+S+ GY +
Sbjct: 96 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 155
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+ A +FD M RD++SWN +I YA+ G ++ E+F+ + K +++NA
Sbjct: 156 DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA------ 209
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AK 303
VT+ ++L ACA G +GK +H ++ M G+ +
Sbjct: 210 ------------------------VTLSAVLLACAHSGSQRLGKCIHDQVIKM--GLESN 243
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
V G ++IDMY KCG +E A + F MR+++V +WS ++ G HG A+E++ +F EM
Sbjct: 244 VFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNM 303
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
V+P ITFV VL ACSHAG +EEG +FK M E+++EP + HYG
Sbjct: 304 AGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLK 363
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
+H +V+LG ++ ++L + G YVLLSNIYA
Sbjct: 364 EAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYA 423
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
G W VE++R LM +S + K PG SL++
Sbjct: 424 DAGRWEDVERMRILMKNSGLVKPPGFSLVD 453
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 44/331 (13%)
Query: 39 ALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLY 93
L ++ G+ +I G + A K F ++ E + ++ ++ G + +A+ ++
Sbjct: 239 GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVF 298
Query: 94 TQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG-KIVKYGFEFNRFVRN--SLIYFH 150
+M +KPN TF VL AC+ G+ H K + + F+ V + ++
Sbjct: 299 YEMNMAGVKPNYITFVSVLAACSHAGLLEEGW--HWFKAMSHEFDVEPGVEHYGCMVDLL 356
Query: 151 ANCGDLNTASVLFDG-DAKMDVVAWSSLTAGYARR-----GELSMARSLFDEMPVRDLVS 204
G L A L G + D V W +L GE+S AR LF+ P ++
Sbjct: 357 GRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEIS-ARKLFELDP-KNCGY 414
Query: 205 WNVMITGYAKQGEMEKA--------NELFNEVPKRDVVSWNAMISGYVLCGM-NKQALEM 255
+ ++ YA G E N + P +V + +++ + Q ++
Sbjct: 415 YVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKI 474
Query: 256 FE-------EMRSVGERPDDVTMLSLLTACADLG--DLEVGKKVHCTLLDMTSGVAKVLH 306
+E +++ VG PD ++L D+G + E+ +VH L + G+ +
Sbjct: 475 YEYLEKLSMKLQEVGYVPDMTSVLH------DVGHEEKEMVLRVHSEKLAVAFGIMNTVP 528
Query: 307 GNA--LIDMYAKCGSIERAIEVFLGMRDRDV 335
G +I CG AI+ + DR++
Sbjct: 529 GTTIHIIKNLRVCGDCHTAIKFISKIVDREI 559
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 246/462 (53%), Gaps = 75/462 (16%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
+NYA+K+ K++ P + +N +IRG + S+NP ++ +Y Q+ + P+ T+ F+LK+
Sbjct: 804 VNYAYKLLSKLSNPPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFLLKS 863
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
+RL R +G +H +VK G E++ F+ N+LI+ + + D +A LFD ++V W
Sbjct: 864 SSRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDEMPYKNLVTW 923
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+S+ YA+ G++ AR +FDEM +RD+V+W+ MI GY K GE +NE
Sbjct: 924 NSILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGE-------YNE------- 969
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
ALE+F++M +G + ++VTM+S+L ACA LG+L GK VH
Sbjct: 970 -----------------ALEIFDQMMRMGSSKANEVTMVSVLCACAHLGELNRGKVVHRY 1012
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG--MRDRDVSTWSTLIGGLAFHGFA 351
+LD+ + +L +LIDMYAKCGSI A VF G ++ D W+ +IGGLA HGF
Sbjct: 1013 ILDVHLPLTVILQ-TSLIDMYAKCGSIGDAWGVFCGASVKKTDALMWNAMIGGLASHGFI 1071
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411
ES+ +F +M+ ++ P EITF+ +L ACSH G V+E +F ++ E EP HY
Sbjct: 1072 RESLLLFHKMRESEIDPDEITFLCLLAACSHGGLVKEAWHFFTSLK-ESGAEPKSEHYAC 1130
Query: 412 ---------------------------------------HGDVELGRLANKRLLNMRKDE 432
HG++EL K+L+ ++
Sbjct: 1131 MVDVLSRAGLVKDAHDFISEMLIKPTGSVLGALFNGCINHGNLELAETVGKKLIELQPHN 1190
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
G YV L+N+YA ++ +R+ M+ +KK G S+I+
Sbjct: 1191 DGRYVGLANVYAINKQFGAARSMREAMEKKGVKKIAGHSIIK 1232
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/360 (20%), Positives = 137/360 (38%), Gaps = 72/360 (20%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
A+ H + P MYN II G + +++ L +M+ ++P+++T + +
Sbjct: 458 AVTLLHDIVQNGLIPSLMMYNNIIEGMCKEGRSEESLKLLAEMKDAGVEPSQYTLNCIYG 517
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
+ K+ YGFE +++ H C L + +D
Sbjct: 518 CLAERCDFAGALDLLKKMRFYGFE--PWIK------HTTC----LVKKLCENGKAVDACK 565
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR-- 231
+ AG E +R +VS+ I G + +++ ELF +
Sbjct: 566 YIDDVAG---------------EGFLRHMVSYTAAIEGLIRNEGVDRGLELFRDTCANGH 610
Query: 232 --DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
DV++++ +I +A +F EM S G +P T
Sbjct: 611 CPDVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKPSVATY------------------ 652
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM----RDRDVSTWSTLIGGL 345
N++ID + K G I+R + + M ++ DV T+++LI GL
Sbjct: 653 ------------------NSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGL 694
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
E+I+ + EM+ P ITF+ ++ + G E YF+ M +E +EP+
Sbjct: 695 CASRRPSEAISRWNEMKGKDCYPNRITFMALIQGLCNCGWSSEALVYFREM-EEKEMEPD 753
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNV---MITGYAKQGEMEKANELFNEVPKRDV---- 233
Y G+ A S+F+E+ R + ++ ++ + K G+++KA EL + +R +
Sbjct: 224 YCNNGKSERALSVFNEILSRGWLDEHISTILVVSFCKWGQVDKAFELIEMLEERHIRLNY 283
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
++ +I G+V +A ++FE+MR +G PD L+ DLE+ ++
Sbjct: 284 KTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPDIALYDVLIGGLCKHKDLEMALSLY 341
>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Glycine max]
Length = 576
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 176/567 (31%), Positives = 274/567 (48%), Gaps = 113/567 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSAL--RELIYSGSVVIPGAINYAHKMFVKITEP 68
L KKC+ ++ KQI A + INGF L R L++ + A NYA+ M + P
Sbjct: 9 LMKKCSTVKQAKQIHAHILINGFTFLRPLLIHRMLLWDVTNYRTMA-NYAYSMLHHLHIP 67
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D+F + +IR +Q +AV LY QM + S+ P S LK+C R+ G +H
Sbjct: 68 DSFSWGCVIRFFSQKCLFTEAVSLYVQMHRTSLCPTSHAVSSALKSCARIHDMLCGMSIH 127
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM------------------- 169
G++ +GF +V+ +L+ ++ GD+ TA +FD A
Sbjct: 128 GQVHVFGFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANKSVVSWNSLLSGYVKAGNLD 187
Query: 170 ------------DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGE 217
DV++W+S+ +GYA+ G + A +LF MP R+L SWN MI G+ G
Sbjct: 188 EAQYLFSEIPGKDVISWNSMISGYAKAGNVGQACTLFQRMPERNLSSWNAMIAGFIDCGS 247
Query: 218 MEKANELFNEVPKRDVVSWNAMISGY---------------------------VLC---- 246
+ A E F+ +P+R+ VSW MI+GY + C
Sbjct: 248 LVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHKDLLSYNAMIACYAQN 307
Query: 247 GMNKQALEMFEEM--RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
K+ALE+F +M + + PD +T+ S+++AC+ LGDLE + + D G+
Sbjct: 308 SKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIESHMNDF--GIVLD 365
Query: 305 LH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
H ALID+YAKCGSI++A E+F +R RD+ +S +I G +G A ++I +F +M
Sbjct: 366 DHLATALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGINGKASDAIKLFEQMLA 425
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------ 411
+ P +T+ G+L A +HAG VE+G + F M+D Y + P+I HYG+
Sbjct: 426 ECIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSMKD-YGLVPSIDHYGIMVDLFGRAGYLD 484
Query: 412 ---------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
H +VELG +A + + + D +G LLS+IYA
Sbjct: 485 EAYKLILNMPMQPNAGVWGALLLACRLHNNVELGEIAVQHCIKLETDTTGYCSLLSSIYA 544
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCS 471
+ +W+ +K+RK M+ D GCS
Sbjct: 545 TVEKWDDAKKLRKGMEGKDFT---GCS 568
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 23/303 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI--KPNKFTFSF 110
G ++ A K+F ++ D YN +I AQ+ P +A+ L+ M K I P+K T +
Sbjct: 277 GDVDSARKLFDQMDHKDLLSYNAMIACYAQNSKPKEALELFNDMLKQDIYVHPDKMTLAS 336
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
V+ AC++L + + + +G + + +LI +A CG ++ A LF K D
Sbjct: 337 VISACSQLGDLEHWWWIESHMNDFGIVLDDHLATALIDLYAKCGSIDKAYELFHNLRKRD 396
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFN 226
+VA+S++ G G+ S A LF++M +LV++ ++T Y G +EK + FN
Sbjct: 397 LVAYSAMIYGCGINGKASDAIKLFEQMLAECIGPNLVTYTGLLTAYNHAGLVEKGYQCFN 456
Query: 227 EVPKRDVVS----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ +V + M+ + G +A ++ M +P+ +LL AC
Sbjct: 457 SMKDYGLVPSIDHYGIMVDLFGRAGYLDEAYKLILNMPM---QPNAGVWGALLLACRLHN 513
Query: 283 DLEVGKKV--HCTLLDM-TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS--T 337
++E+G+ HC L+ T+G +L +YA + A ++ GM +D + +
Sbjct: 514 NVELGEIAVQHCIKLETDTTGYCSLLS-----SIYATVEKWDDAKKLRKGMEGKDFTGCS 568
Query: 338 WST 340
W++
Sbjct: 569 WTS 571
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 175/582 (30%), Positives = 283/582 (48%), Gaps = 111/582 (19%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C+++ LKQIQA +T G + L+ ++ G I+YAH +F + P+ F
Sbjct: 60 QSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFF 119
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+NT+I+G ++ +P + QM + + + +F F LKAC + + +G VH I
Sbjct: 120 WNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIW 179
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K GF+ + FV+N LI + G L A +FD + DVV W+++ GYAR L A +
Sbjct: 180 KRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIA 239
Query: 193 LFDEMPVRD---------------------------------------LVSWNVMITGYA 213
LF+ M D L N M+ Y
Sbjct: 240 LFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYV 299
Query: 214 KQGEMEKANELFN-------------------------------EVPKRDVVSWNAMISG 242
K G + A E+FN E+P+R++VSWNAMI+G
Sbjct: 300 KCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAG 359
Query: 243 YVLCGMNKQALEMFEEMRS-VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
Y +ALE+F M VG P + T++ +L+A LG LE+G+++HC ++
Sbjct: 360 YSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQ 419
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
++ NA++DMYAKCGSI+ A ++F M ++++ +W+++I A +G A++++ +F +M
Sbjct: 420 VSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQM 479
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------- 411
++P ITF+GVL ACS+ G V EG+ +F+ M + + +EP HY
Sbjct: 480 IGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGL 539
Query: 412 -----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
HG+VE+ +LA ++LL + ++SG Y LL+NI
Sbjct: 540 LKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLANI 599
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYL 484
A +W V VR++M + +KK PG SLIE + K F ++L
Sbjct: 600 CADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGK-FHEFL 640
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/471 (32%), Positives = 241/471 (51%), Gaps = 60/471 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A ++F TE D +N ++ G Q +A ++ +M P + S+
Sbjct: 245 GRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKM------PQRDVVSWNT 298
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNR------FVRNSLIYFHANCGDLNTASVLFDGD 166
G+ G + + F+ F +++ +A G L A +FD
Sbjct: 299 MVS--------GYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM 350
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+ V+W+++ A Y +R + A+ LFD MP R++ SWN M+TGYA+ G +++A +F
Sbjct: 351 PDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFG 410
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+P++D VSW AM++ Y G +++ L++F+EM GE + +L+ CAD+ LE
Sbjct: 411 MMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALEC 470
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G ++H L+ GV + GNAL+ MY KCGS+E A F M +RDV +W+T+I G A
Sbjct: 471 GMQLHSRLIKAGYGVGCFV-GNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYA 529
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HGF +E++ +F M++ +P +IT VGVL ACSH+G VE+G YF M ++ +
Sbjct: 530 RHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKP 589
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HY +H + ELGR A +++
Sbjct: 590 EHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFE 649
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + +G YVLLSNIYAS G+W V+K+R +M + +KK PG S IE +K
Sbjct: 650 LEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNK 700
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 177/362 (48%), Gaps = 28/362 (7%)
Query: 45 YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKP 103
Y+ + +P A+++ F I PD+F YNT++ S + D L+ +M K S+
Sbjct: 148 YAANGRLPQALSF----FRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSY 203
Query: 104 NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF 163
N S L V + +VRN G + A LF
Sbjct: 204 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN---------GRIQEARELF 254
Query: 164 DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANE 223
D + D ++W++L AGY +R ++ A+ +F++MP RD+VSWN M++GYA++G+M +A
Sbjct: 255 DSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARR 314
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD--VTMLSLLTACADL 281
LF+ P RDV +W A++SGY GM ++A +F+ M PD V+ +++ A
Sbjct: 315 LFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM------PDKNAVSWNAMMAAYVQR 368
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
+E K+ L D V N ++ YA+ G ++ A +F M +D +W+ +
Sbjct: 369 RMMEEAKE----LFDAMP-CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAM 423
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEY 400
+ + GF+EE++ +F+EM R F VL C+ +E G + + +L++ Y
Sbjct: 424 LAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGY 483
Query: 401 NI 402
+
Sbjct: 484 GV 485
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 13/253 (5%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N+++ +A G L A F + D ++++L L+ R+LFDEMPV+D V
Sbjct: 142 NTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSV 201
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
S+NVMI+ +A G + A F+ P++D VSWN M++ YV G ++A E+F+
Sbjct: 202 SYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEW- 260
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
D ++ +L+ +E +K+ + V+ N ++ YA+ G + A
Sbjct: 261 ---DAISWNALMAGYVQRSQIEEAQKMFNKMPQR-----DVVSWNTMVSGYARRGDMAEA 312
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+F RDV TW+ ++ G A +G EE+ +F M +++ ++ A
Sbjct: 313 RRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNA----VSWNAMMAAYVQR 368
Query: 384 GKVEEGKKYFKLM 396
+EE K+ F M
Sbjct: 369 RMMEEAKELFDAM 381
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 117/265 (44%), Gaps = 17/265 (6%)
Query: 143 RNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL 202
RN I H G + A LF + ++++ AGYA G L A S F +P D
Sbjct: 110 RNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDS 169
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
S+N ++ + LF+E+P +D VS+N MIS + G+ A F+ +
Sbjct: 170 FSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFD----L 225
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
D V+ +L A G ++ +++ + + + + NAL+ Y + IE
Sbjct: 226 APEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDA-----ISWNALMAGYVQRSQIEE 280
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A ++F M RDV +W+T++ G A G E+ +F V P F + +
Sbjct: 281 AQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF------DVAPIRDVFTWTAIVSGY 334
Query: 383 A--GKVEEGKKYFKLMRDEYNIEPN 405
A G +EE K+ F M D+ + N
Sbjct: 335 AQNGMLEEAKRVFDAMPDKNAVSWN 359
>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
Length = 594
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 169/522 (32%), Positives = 248/522 (47%), Gaps = 118/522 (22%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F++N +++ + +P A+ L+ M + + +KF+ S VLKAC+RL + G +H
Sbjct: 66 DPFLWNAVMKSHSHGTDPRRALLLFCLMLENGVSVDKFSSSLVLKACSRLGFVKGGMQIH 125
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS------------ 176
G + K G + F++N LI + CG L A +FD K D V+++
Sbjct: 126 GFLRKTGLWSDLFLQNCLIALYLKCGCLGFARQIFDRMPKRDSVSYNPXXEGXVKCGLIE 185
Query: 177 ---------------------LTAGYARRGE-LSMARSLFDEMPVRDLVSWNVMITGYAK 214
+ +GYA+ + L +A LF EMP +DL+SWN +I GY K
Sbjct: 186 SARELFXLXXXEXKNXXSXXCMXSGYAQTSDGLXIASKLFSEMPEKDLISWNSIIDGYVK 245
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ----------------------- 251
G E A +L++ +P+RDV++W MI GYV G Q
Sbjct: 246 HGRXEDAKDLYDVMPRRDVITWATMIDGYVKLGFVHQAKTLLDXIPHRDVVAYNSMMAGY 305
Query: 252 --------ALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
ALE+F +M PD+ T++ +L+A A LG L +DM V
Sbjct: 306 VQNKYHMEALELFGDMEKESHLSPDETTLVIVLSAIAQLGRLSKA-------VDMYLYVV 358
Query: 303 K---VLHGN---ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
K L G +LIDMY+KCGSI+ A+ VF G+ ++ + W+ +IGGLA HG +
Sbjct: 359 KKQFFLGGKLWVSLIDMYSKCGSIQHAMLVFEGLENKTIDHWNAIIGGLAIHGRGGPAFN 418
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----- 411
M +++R ++P +ITF GVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 419 MLLQIERSSIKPDDITFTGVLNACSHSGFVKEGLLCFELMRRKHKIEPRLQHYGCMVDIL 478
Query: 412 ----------------------------------HGDVELGRLANKRLLNMRKDESGDYV 437
H + E+G L K L+ YV
Sbjct: 479 SRSGSIELAKNLIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQADYNPSSYV 538
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
LLSN+YAS G W V VR +M + I K PGCS IE D +
Sbjct: 539 LLSNMYASFGMWKDVRGVRTMMKERKIPKIPGCSSIELDGRV 580
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 19/295 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G ++ A + I D YN+++ G Q++ ++A+ L+ MEK S + P++ T V
Sbjct: 278 GFVHQAKTLLDXIPHRDVVAYNSMMAGYVQNKYHMEALELFGDMEKESHLSPDETTLVIV 337
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + ++ +VK F + SLI ++ CG + A ++F+G +
Sbjct: 338 LSAIAQLGRLSKAVDMYLYVVKKQFFLGGKLWVSLIDMYSKCGSIQHAMLVFEGLENKTI 397
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELFNE 227
W+++ G A G A ++ ++ + ++ TG + G +++ F
Sbjct: 398 DHWNAIIGGLAIHGRGGPAFNMLLQIERSSIKPDDITFTGVLNACSHSGFVKEGLLCFEL 457
Query: 228 VPKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ ++ + + M+ G + A + E+M P+DV + LTAC+
Sbjct: 458 MRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEKMPI---EPNDVIWRTFLTACSHHK 514
Query: 283 DLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+ E+G+ V H L + + VL L +MYA G + V M++R +
Sbjct: 515 EFEMGELVAKHLILQADYNPSSYVL----LSNMYASFGMWKDVRGVRTMMKERKI 565
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 156/466 (33%), Positives = 237/466 (50%), Gaps = 73/466 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A +F K++ D +N +I G +Q+ + + LY +M+ +P+ VL
Sbjct: 165 GRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVL 224
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + G +H I GF ++ SL+ +ANCG ++
Sbjct: 225 SACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMH--------------- 269
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+AR ++D++P + +V M++GYAK G ++ A +F+ + ++D
Sbjct: 270 ----------------LAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKD 313
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+V W+AMISGY +AL++F EM+ PD +TMLS+++ACA++G L K +H
Sbjct: 314 LVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIH- 372
Query: 293 TLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
T D +G + L NALIDMYAKCG++ +A EVF M ++V +WS++I A HG A
Sbjct: 373 TYAD-KNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDA 431
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411
+ +IA+F M+ + P +TF+GVL ACSHAG VEEG+K+F M +E+ I P HYG
Sbjct: 432 DSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGC 491
Query: 412 ---------------------------------------HGDVELGRLANKRLLNMRKDE 432
HG++ELG A RLL + D
Sbjct: 492 MVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDH 551
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G V+LSNIYA W+ V VRKLM + K+ CS IE +++
Sbjct: 552 DGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNE 597
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/414 (26%), Positives = 177/414 (42%), Gaps = 96/414 (23%)
Query: 11 LWKKCTNLRTLKQIQALV---TINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
L C LR +KQI A + ++ N L + P A++YA +F I
Sbjct: 18 LLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPN 77
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P T N ++R ++ P + + LY + + ++F+F +LKA ++L N+G +
Sbjct: 78 PPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEI 137
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG K+G +FHA D S+L A YA G +
Sbjct: 138 HGLASKFG------------FFHA------------------DPFIQSALIAMYAACGRI 167
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
AR L F+++ RDVV+WN MI GY
Sbjct: 168 MDARFL-------------------------------FDKMSHRDVVTWNIMIDGYSQNA 196
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
L+++EEM++ G PD + + ++L+ACA G+L GK +H + D V +
Sbjct: 197 HYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQ- 255
Query: 308 NALIDMYAKCGSIERAIEVF--------------------LG-----------MRDRDVS 336
+L++MYA CG++ A EV+ LG M ++D+
Sbjct: 256 TSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLV 315
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
WS +I G A E++ +F EMQR ++ P +IT + V+ AC++ G + + K
Sbjct: 316 CWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAK 369
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%)
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
++ A LF+ +P N ++ + + L ++ +R G D + LL A
Sbjct: 65 LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKA 124
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
+ L L +G ++H A +ALI MYA CG I A +F M RDV T
Sbjct: 125 VSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVT 184
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+ +I G + + + + ++ EM+ P I VL AC+HAG + GK + ++
Sbjct: 185 WNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIK 244
Query: 398 D 398
D
Sbjct: 245 D 245
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 167/547 (30%), Positives = 275/547 (50%), Gaps = 88/547 (16%)
Query: 11 LWKKC---TNLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKI 65
L K C +L+ K+I + N F ++ A+ ++ Y+ I+ A+KMF ++
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKC----RQIDDAYKMFDRM 208
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
E D +NTII G +Q+ A+ L +M+ +P+ T VL A + +G
Sbjct: 209 PERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGK 268
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG ++ GF + +L ++ CG + TA ++FDG + VV+W+S+ GY + G
Sbjct: 269 SIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNG 328
Query: 186 ELSMARSLFDEM------PV---------------------------------RDLVSWN 206
E A ++F++M P D+ N
Sbjct: 329 EPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMN 388
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
+I+ Y+K ++ A+++FN + R VSWNAMI GY G +AL F EM+S+G +P
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKP 448
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D TM+S++ A A+L K +H L+ + + AL+DMY+KCG+I A ++
Sbjct: 449 DSFTMVSVIPALAELSVTRHAKWIH-GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKL 507
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F + DR V TW+ +I G HG ++ +F +M++ V P +IT++ V+ ACSH+G V
Sbjct: 508 FDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLV 567
Query: 387 EEGKKYFKLMRDEYNIEPNIRHYG------------------------------------ 410
+EG ++FK M+ +Y +EP++ HYG
Sbjct: 568 DEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXG 627
Query: 411 ---VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
+H ++E+G A K+L + DE G +VLL+NIYAS +W++V +VRK M+ +KK
Sbjct: 628 ACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKT 687
Query: 468 PGCSLIE 474
PGCS++E
Sbjct: 688 PGCSVVE 694
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 141/518 (27%), Positives = 240/518 (46%), Gaps = 84/518 (16%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
+H ++ L + CT+++ L QI LV NG ++ +L+ S G+IN A ++F
Sbjct: 49 KHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKY--GSINEAARVFEP 106
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
I + +Y+T+++G A++ + A+ +M +KP + F+++LK C G
Sbjct: 107 IDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG 166
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+HG+++ F N F ++ +A C ++ A +FD + D+V+W+++ AG+++
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQN 226
Query: 185 G----ELSMARSLFDEMPVRDLVSWNVMITG----------------------------- 211
G L + + DE D ++ ++
Sbjct: 227 GFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNIS 286
Query: 212 ------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
Y+K G +E A +F+ + ++ VVSWN+M+ GYV G ++A+ +FE+M G
Sbjct: 287 TALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGID 346
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
P VT++ L ACADLGDLE GK VH +D + + + N+LI MY+KC ++ A +
Sbjct: 347 PTGVTIMEALHACADLGDLERGKFVH-KFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS---- 381
+F + R +W+ +I G A +G E++ F EM+ L ++P T V V+ A +
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSV 465
Query: 382 --HA-----------------------------GKVEEGKKYFKLMRDEYNIEPN--IRH 408
HA G + +K F ++ D + I N I
Sbjct: 466 TRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDG 525
Query: 409 YGVHGDVELGRLANKRLLNMRKD--ESGDYVLLSNIYA 444
YG HG LGR A M+K E D LS I A
Sbjct: 526 YGTHG---LGRAALDLFDKMKKGAVEPNDITYLSVISA 560
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 167/547 (30%), Positives = 275/547 (50%), Gaps = 88/547 (16%)
Query: 11 LWKKC---TNLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKI 65
L K C +L+ K+I + N F ++ A+ ++ Y+ I+ A+KMF ++
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKC----RQIDDAYKMFDRM 208
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
E D +NTII G +Q+ A+ L +M+ +P+ T VL A + +G
Sbjct: 209 PERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGK 268
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG ++ GF + +L ++ CG + TA ++FDG + VV+W+S+ GY + G
Sbjct: 269 SIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNG 328
Query: 186 ELSMARSLFDEM------PV---------------------------------RDLVSWN 206
E A ++F++M P D+ N
Sbjct: 329 EPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMN 388
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
+I+ Y+K ++ A+++FN + R VSWNAMI GY G +AL F EM+S+G +P
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKP 448
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D TM+S++ A A+L K +H L+ + + AL+DMY+KCG+I A ++
Sbjct: 449 DSFTMVSVIPALAELSVTRHAKWIH-GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKL 507
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F + DR V TW+ +I G HG ++ +F +M++ V P +IT++ V+ ACSH+G V
Sbjct: 508 FDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLV 567
Query: 387 EEGKKYFKLMRDEYNIEPNIRHYG------------------------------------ 410
+EG ++FK M+ +Y +EP++ HYG
Sbjct: 568 DEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLG 627
Query: 411 ---VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
+H ++E+G A K+L + DE G +VLL+NIYAS +W++V +VRK M+ +KK
Sbjct: 628 ACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKT 687
Query: 468 PGCSLIE 474
PGCS++E
Sbjct: 688 PGCSVVE 694
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 141/518 (27%), Positives = 240/518 (46%), Gaps = 84/518 (16%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
+H ++ L + CT+++ L QI LV NG ++ +L+ S G+IN A ++F
Sbjct: 49 KHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKY--GSINEAARVFEP 106
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
I + +Y+T+++G A++ + A+ +M +KP + F+++LK C G
Sbjct: 107 IDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG 166
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+HG+++ F N F ++ +A C ++ A +FD + D+V+W+++ AG+++
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQN 226
Query: 185 G----ELSMARSLFDEMPVRDLVSWNVMITG----------------------------- 211
G L + + DE D ++ ++
Sbjct: 227 GFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNIS 286
Query: 212 ------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
Y+K G +E A +F+ + ++ VVSWN+M+ GYV G ++A+ +FE+M G
Sbjct: 287 TALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGID 346
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
P VT++ L ACADLGDLE GK VH +D + + + N+LI MY+KC ++ A +
Sbjct: 347 PTGVTIMEALHACADLGDLERGKFVH-KFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS---- 381
+F + R +W+ +I G A +G E++ F EM+ L ++P T V V+ A +
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSV 465
Query: 382 --HA-----------------------------GKVEEGKKYFKLMRDEYNIEPN--IRH 408
HA G + +K F ++ D + I N I
Sbjct: 466 TRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDG 525
Query: 409 YGVHGDVELGRLANKRLLNMRKD--ESGDYVLLSNIYA 444
YG HG LGR A M+K E D LS I A
Sbjct: 526 YGTHG---LGRAALDLFDKMKKGAVEPNDITYLSVISA 560
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/416 (36%), Positives = 221/416 (53%), Gaps = 73/416 (17%)
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
+ P+ FT SFVLKAC +L G +HG K GF N F++N ++ + CG++
Sbjct: 6 VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEM---- 61
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK 220
GDA + LF++MP RD V+WN++I AK+G+++
Sbjct: 62 ----GDAML-----------------------LFEKMPQRDAVTWNIVIAQLAKRGDIDG 94
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A F +P ++V SW +MISG+V CG +A+++F ++ RP++VT++S+L ACAD
Sbjct: 95 AYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACAD 154
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
LGDL++G+ VH SG + +H N LIDMY KCG +E A VF M +R V +WS
Sbjct: 155 LGDLDLGRIVH--EYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWS 212
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+I GLA HG AEE++ +F EM +L V+P +TF+G+L ACSH G ++EG+++F M +
Sbjct: 213 AMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTAD 272
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y + P I HYG VH +++L
Sbjct: 273 YGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEE 332
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
A K L + G YV++SNIYA W +VRKLM D +KK G S I +
Sbjct: 333 AIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVN 388
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 147/314 (46%), Gaps = 25/314 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I+ A+ F+++ + + ++I G Q P +A+ L+ ++E +++PN+ T VL
Sbjct: 90 GDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVL 149
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L ++G VH K GF+ N V N+LI + CG L A +F + VV
Sbjct: 150 AACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVV 209
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNE- 227
+WS++ AG A G+ A LF EM + V++ ++ + G +++ F
Sbjct: 210 SWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASM 269
Query: 228 ------VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
+P+ + + ++ + G+ ++A E + S+ +P+ V +LL C
Sbjct: 270 TADYGVIPQ--IEHYGCVVDLFSRAGLLEEAHEF---ILSMPIKPNGVVWGALLGGCKVH 324
Query: 282 GDLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV---S 336
++++ ++ H + LD + V+ N +YA+ E A V M+DR V S
Sbjct: 325 KNIDLAEEAIKHLSELDPLNDGYYVVISN----IYAEAERWEDAARVRKLMKDRGVKKTS 380
Query: 337 TWSTLIGGLAFHGF 350
WS++ H F
Sbjct: 381 GWSSITVNGVVHEF 394
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 165/510 (32%), Positives = 250/510 (49%), Gaps = 109/510 (21%)
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVH 128
TF++N +IR SA S +P A ++ + + P++FTF +LK+ +RL + G VH
Sbjct: 43 TFLHNLLIRASATSPSPRLAFAAFSSILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVH 102
Query: 129 GKIVKYGFEFNRFVRNSLIYFHA--------------------------------NCGDL 156
+ V+ G + FV N+L+ +A CG++
Sbjct: 103 AQAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTMLGGYVKCGEI 162
Query: 157 NTASVLFD------------------GDAKMDV---------------VAWSSLTAGYAR 183
A +F+ G ++DV V+W+S+ G+AR
Sbjct: 163 GEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNSMITGFAR 222
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G L +AR +FDEMPVR+LVSWN M+ GYA GEM A ELF+ +P++DVVSW MISGY
Sbjct: 223 HGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGY 282
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV- 301
+ LE+F M+S P++VTM+S+L+ACA L LE G+ H +D V
Sbjct: 283 AQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAH-AFIDKHKMVL 341
Query: 302 -AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
++ G ALIDMY+KCG + A+++F + ++VS W+ LI GLA +G SI +F +
Sbjct: 342 DSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQ 401
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M+R +P ITFVGVL AC+H G V+EG++ F+ M ++P +HYG
Sbjct: 402 MRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAG 461
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
+H V++ +L + +SG +VL+S+
Sbjct: 462 LLEEAEELIRSMPMVPDVMILGALLGACRMHKRVDVAARVQNEILGLSTQQSGCHVLISD 521
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
IYA+ G+W R ++ I K G S
Sbjct: 522 IYAAAGKWADALYARGVLQKFGISKLRGSS 551
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 143/305 (46%), Gaps = 21/305 (6%)
Query: 36 DSSALRELIYSGSVV----IPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF 91
D +R L+ ++V + G +N A ++F ++ E D + +I G AQ++ + +
Sbjct: 234 DEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLE 293
Query: 92 LYTQME-KCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF----EFNRFVRNSL 146
L+ M+ + ++ PN+ T VL AC L G H I K+ EFN + +L
Sbjct: 294 LFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFN--LGAAL 351
Query: 147 IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM----PVRDL 202
I ++ CG + A +F + +V AW++L G A G++ + +F++M +
Sbjct: 352 IDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNG 411
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL--EMFEEMR 260
+++ ++T A G +++ F + V A G ++ + + L E E +R
Sbjct: 412 ITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIR 471
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI-DMYAKCGS 319
S+ PD + + +LL AC ++V +V +L +++ + + LI D+YA G
Sbjct: 472 SMPMVPDVMILGALLGACRMHKRVDVAARVQNEILGLSTQQSGC---HVLISDIYAAAGK 528
Query: 320 IERAI 324
A+
Sbjct: 529 WADAL 533
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 163/523 (31%), Positives = 261/523 (49%), Gaps = 85/523 (16%)
Query: 44 IYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98
IY G+ ++ G++ A ++F + + + +I G AQ +A + +M +
Sbjct: 347 IYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406
Query: 99 CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158
I+PN+ TF +L AC+ G + I++ G+ + VR +L+ +A CG L
Sbjct: 407 SGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKD 466
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF------------------------ 194
A +F+ +K +VVAW+++ Y + + A + F
Sbjct: 467 AHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKS 526
Query: 195 -DEMPV--------------RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
D + + DL N +++ + G++ A LFN++PKRD+VSWN +
Sbjct: 527 SDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTI 586
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
I+G+V G N+ A + F+ M+ G +PD +T LL ACA L G+++H L+ +
Sbjct: 587 IAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLH-ALITEAA 645
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
VL G LI MY KCGSIE A +VF + ++V +W+++I G A HG +E++ +F
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFY 705
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
+MQ+ V+P ITFVG L AC+HAG +EEG +F+ M+ E+NIEP + HYG
Sbjct: 706 QMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRA 764
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
VH +VEL A ++ L + +++G +V+LS
Sbjct: 765 GLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILS 824
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQY 483
NIYA+ G W V K+RK+M D + K+PG S IE D K Y
Sbjct: 825 NIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFY 867
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 207/432 (47%), Gaps = 57/432 (13%)
Query: 15 CTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKIT 66
C + R + +++ L+ G+++D ++ G+ +I G I A K+F +
Sbjct: 221 CADARNVDKGRELYNLILKAGWDTD-------LFVGTALINMHIKCGDIGDATKVFDNLP 273
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
D + ++I G A+ A L+ +ME+ ++P+K F +L+AC G
Sbjct: 274 TRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKK 333
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VH ++ + G++ +V +++ + CG + A +FD +VV+W+++ AG+A+ G
Sbjct: 334 VHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGR 393
Query: 187 LSMARSLFDEM------PVR---------------------------------DLVSWNV 207
+ A F++M P R D
Sbjct: 394 IDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTA 453
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+++ YAK G ++ A+ +F ++ K++VV+WNAMI+ YV AL F+ + G +P+
Sbjct: 454 LLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPN 513
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEV 326
T S+L C LE+GK VH L M +G+ LH NAL+ M+ CG + A +
Sbjct: 514 SSTFTSILNVCKSSDSLELGKWVH--FLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F M RD+ +W+T+I G HG + + F+ MQ ++P +ITF G+L AC+ +
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEAL 631
Query: 387 EEGKKYFKLMRD 398
EG++ L+ +
Sbjct: 632 TEGRRLHALITE 643
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 184/380 (48%), Gaps = 41/380 (10%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A ++F + E D + +N ++ G Q +A L+ QM + S+KP+K TF +L AC
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+ G ++ I+K G++ + FV +LI H CGD+ A+ +FD D+V W+S+
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSM 283
Query: 178 TAGYARRGELSMARSLFDEMPVRDL--------------------------------VSW 205
G AR G A +LF M + V W
Sbjct: 284 ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGW 343
Query: 206 NV-------MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
+ +++ Y K G ME A E+F+ V R+VVSW AMI+G+ G +A F +
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M G P+ VT +S+L AC+ L+ G+++ +++ G + AL+ MYAKCG
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR-TALLSMYAKCG 462
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
S++ A VF + ++V W+ +I H + ++A F+ + + ++P TF +L
Sbjct: 463 SLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILN 522
Query: 379 ACSHAGKVEEGK-KYFKLMR 397
C + +E GK +F +M+
Sbjct: 523 VCKSSDSLELGKWVHFLIMK 542
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 182/363 (50%), Gaps = 42/363 (11%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
DT N ++ +++ +A+ + +++ I+ + T+S +L+ C + G ++
Sbjct: 74 DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
I K G + + F+RN+LI +A CG+ +A +FD + DV +W+ L GY + G
Sbjct: 134 NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193
Query: 189 MARSLFDEMPVRDLV---------------------------------SWNV-------M 208
A L ++M V+D V W+ +
Sbjct: 194 EAFKLHEQM-VQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
I + K G++ A ++F+ +P RD+V+W +MI+G G KQA +F+ M G +PD
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
V +SLL AC LE GKKVH + ++ ++ G A++ MY KCGS+E A+EVF
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDT-EIYVGTAILSMYTKCGSMEDALEVFD 371
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
++ R+V +W+ +I G A HG +E+ F +M + P +TF+ +L ACS ++
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431
Query: 389 GKK 391
G++
Sbjct: 432 GQQ 434
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 207/431 (48%), Gaps = 55/431 (12%)
Query: 15 CTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
C++ LK QIQ + G+ SD L+ + G++ AH++F KI++ +
Sbjct: 423 CSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKC--GSLKDAHRVFEKISKQNVV 480
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+N +I Q + +A+ + + K IKPN TF+ +L C +G VH I
Sbjct: 481 AWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLI 540
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+K G E + V N+L+ NCGDL +A LF+ K D+V+W+++ AG+ + G+ +A
Sbjct: 541 MKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAF 600
Query: 192 SLFDEM------PVR---------------------------------DLVSWNVMITGY 212
F M P + D++ +I+ Y
Sbjct: 601 DYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMY 660
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
K G +E A+++F+++PK++V SW +MI+GY G K+ALE+F +M+ G +PD +T +
Sbjct: 661 TKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFV 720
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR- 331
L+ACA G +E G H + + ++ H ++D++ + G + A+E + M+
Sbjct: 721 GALSACAHAGLIEEGLH-HFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQV 779
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH----AGKVE 387
+ D W L+G H E +A ++L++ P + GV V S+ AG +
Sbjct: 780 EPDSRVWGALLGACQVHLNVE--LAEKAAQKKLELDPND---NGVFVILSNIYAAAGMWK 834
Query: 388 EGKKYFKLMRD 398
E K K+M D
Sbjct: 835 EVAKMRKVMLD 845
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 121/198 (61%), Gaps = 1/198 (0%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D+ N +I YAK G A ++F+++ ++DV SWN ++ GYV G+ ++A ++ E+M
Sbjct: 144 DIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
+PD T +S+L ACAD +++ G++++ +L + G ALI+M+ KCG I
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK-AGWDTDLFVGTALINMHIKCGDI 262
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A +VF + RD+ TW+++I GLA HG +++ +F+ M+ V+P ++ FV +L AC
Sbjct: 263 GDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRAC 322
Query: 381 SHAGKVEEGKKYFKLMRD 398
+H +E+GKK M++
Sbjct: 323 NHPEALEQGKKVHARMKE 340
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
+D NA+++ G +A+++ E + S + T +LL C +L G+++
Sbjct: 73 KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132
Query: 291 HCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
+ + SGV + N LI+MYAKCG+ A ++F MR++DV +W+ L+GG HG
Sbjct: 133 YNHI--KKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHG 190
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
EE+ + +M + V+P + TFV +L AC+ A V++G++ + L+
Sbjct: 191 LYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLI 237
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 179/565 (31%), Positives = 268/565 (47%), Gaps = 119/565 (21%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ + G + D + LI + A++++H +F +I PD F++N IIR + SQ P
Sbjct: 1 MVVTGRHHDPFLMTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPH 60
Query: 88 DAVFLYTQMEKCS--IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145
+A+ LY +M S I P+ FTF F+LK+C +L +G VH + K GFE N FV N+
Sbjct: 61 NALSLYKKMLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNA 120
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM-------- 197
L+ + GD A +FD D V+++++ G R G + +F EM
Sbjct: 121 LLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPD 180
Query: 198 ---------------------PVRDLVS------------WNVMITGYAKQGEMEKANEL 224
V LV N ++ YAK G +E A +
Sbjct: 181 EYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERV 240
Query: 225 FN------------------------EVPKR--------DVVSWNAMISGYVLCGMNKQA 252
EV +R DVVSW AMISGY G ++A
Sbjct: 241 VRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEA 300
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG--NAL 310
LE+F E+ +G PD+V +++ L+ACA LG LE+G+++H D S G A+
Sbjct: 301 LELFVELEDLGMEPDEVVVVAALSACARLGALELGRRIHHK-YDRDSWQCGHNRGFTCAV 359
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVST--WSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+DMYAKCGSIE A++VFL D +T +++++ GLA HG E ++A+F EM+ + + P
Sbjct: 360 VDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEP 419
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
E+T+V +L AC H+G V+ GK+ F+ M EY + P + HYG
Sbjct: 420 DEVTYVALLCACGHSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLL 479
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
V GDVEL RLA++ LL M D YV+LSN+ +
Sbjct: 480 IQNMPFKANAVIWRALLSACKVDGDVELARLASQELLAMENDHGARYVMLSNMLTLMDKH 539
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIE 474
+ VR+ +D+ I+K PG S +E
Sbjct: 540 DEAASVRRAIDNVGIQKPPGWSHVE 564
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 219/395 (55%), Gaps = 43/395 (10%)
Query: 122 NMGFCVHGKIVKYGFEF-NRFVRNSLIYFHAN--CGDLNTASVLFDGDAKMDVVAWSSLT 178
+G +H + ++ GF + FVR +L+ +A G++ A FD + DV + +
Sbjct: 64 GLGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVML 123
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
A Y RGE++ AR +FD M RDLVSWN MI GYA +G++ A E+F+ RD SW++
Sbjct: 124 AAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSS 183
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MIS Y +K+ALE++ EMR G PD ++M+S+L+AC+ +G L +G +VH ++
Sbjct: 184 MISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVH-RFVESN 242
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
+ G AL+DMYAKCG IE +++VF M +DV TWS++I GLA HG +++++F
Sbjct: 243 RVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLF 302
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
EM ++P EITF+GVL+AC+H G V +GKKYF M D + + P + HYG
Sbjct: 303 SEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGR 362
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
+H +VE+ A +L + G YVLL
Sbjct: 363 AGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLL 422
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
SNIYA W V ++RK + +I++ PG S IE
Sbjct: 423 SNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIE 457
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 140/336 (41%), Gaps = 34/336 (10%)
Query: 51 IPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF 110
+ G + A ++F + D F ++++I A+ + +A+ L+ +M + P+ +
Sbjct: 159 VRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVS 218
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
VL AC+ + +G VH + E + + +L+ +A CGD+ + +F D
Sbjct: 219 VLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKD 278
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELFN 226
V+ WSS+ G A G A SLF EM + L + G G + + F+
Sbjct: 279 VLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFS 338
Query: 227 E-------VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
VP+ + + M+ L G E E +RS+ +PD + +LL AC
Sbjct: 339 SMSDVHGVVPRME--HYGCMVD---LLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACR 393
Query: 280 DLGDLEVGKKVHCTL--LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV-- 335
++E+ ++ L LD + VL L ++YA+ S E E+ +R ++
Sbjct: 394 IHKNVEIAEEAMAKLKVLDPLADGHYVL----LSNIYAQANSWEGVAEMRKTIRRENIQR 449
Query: 336 ----------STWSTLIGGLAFHGFAEESIAMFREM 361
+T + G H EE M EM
Sbjct: 450 VPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEM 485
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 169/535 (31%), Positives = 264/535 (49%), Gaps = 103/535 (19%)
Query: 44 IYSGSVVIPGAINY-----AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-E 97
++S +V++ G + A ++F + E D +N+++ G AQ+ +A ++ M E
Sbjct: 111 LFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE 170
Query: 98 KCSIKPNKFTFSFVL-----KACTRLLYRNM-------------GFCVHGKIVKYGFEFN 139
K SI N ++V +AC LL+ + GF K+ + F+
Sbjct: 171 KNSISWNGLLAAYVHNGRIEEAC--LLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFD 228
Query: 140 RF-VR-----NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+ VR N++I +A G L+ A LFD DV W+++ +GY + G L A++
Sbjct: 229 KMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTF 288
Query: 194 FDEMP-------------------------------VRDLVSWNVMITGYAKQGEMEKAN 222
FDEMP R++ SWN MITGY + G++ +A
Sbjct: 289 FDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQAR 348
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ F+ +P+RD VSW A+I+GY G ++AL MF E++ GE + T L+ CAD+
Sbjct: 349 KFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIA 408
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
LE+GK++H + M G + GNAL+ MY KCGSI+ A + F G+ ++DV +W+T++
Sbjct: 409 ALELGKQIHGQAVKMGYGTGCFV-GNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTML 467
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G A HGF +++ +F M+ V+P EIT VGVL ACSH G ++ G +YF M +Y +
Sbjct: 468 AGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGV 527
Query: 403 EPNIRHYG---------------------------------------VHGDVELGRLANK 423
P +HY +HG+ ELG A +
Sbjct: 528 IPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAE 587
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ M SG YVLLSN+YA+ G W +K+R M D ++K PG S +E +K
Sbjct: 588 MVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNK 642
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 183/386 (47%), Gaps = 28/386 (7%)
Query: 12 WKKC--TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
W K T++R AL N SS + SG + N A +F ++ E D
Sbjct: 52 WNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISG-YLRNSKFNLARNLFDQMPERD 110
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKAC---TRLLYRNMGF 125
F +N ++ G ++ DA L+ M EK + N + R ++ NM
Sbjct: 111 LFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP- 169
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
E N N L+ + + G + A +LF+ + D+++W+ L G+ R+
Sbjct: 170 -----------EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKK 218
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+L AR LFD+MPVRD +SWN MI+GYA+ G + +A LF+E P RDV +W AM+SGYV
Sbjct: 219 KLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQ 278
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
GM +A F+EM ++V+ +++ +++ +++ ++ +
Sbjct: 279 NGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFESM-----PCRNIS 329
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
N +I Y + G I +A + F M RD +W+ +I G A G EE++ MF E+++
Sbjct: 330 SWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKK 391
TF L C+ +E GK+
Sbjct: 390 ESLNRATFGCALSTCADIAALELGKQ 415
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 13/223 (5%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYF-HANCGDLNTASVLFDGDAKM---DVVAWSSLTAGYA 182
+HG I+ + R R I F H + + SV + ++ D++ W+ + +
Sbjct: 1 MHGGIMLRIYNNLRVRRVCTINFGHTSTSTRRSESVTNNNKPRVKDPDILKWNKAISTHM 60
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
R G A +F+ MP R VS+N MI+GY + + A LF+++P+RD+ SWN M++G
Sbjct: 61 RNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTG 120
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
YV A +F+ M D V+ SLL+ A G ++ ++V + + S
Sbjct: 121 YVRNCRLGDARRLFDLM----PEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNS--- 173
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
+ N L+ Y G IE A +F D D+ +W+ L+GG
Sbjct: 174 --ISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGF 214
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 48/265 (18%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D++ WN I+ + + G + A +FN +P+R VS+NAMISGY+ A +F++M
Sbjct: 48 DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
ER + N ++ Y + +
Sbjct: 108 ---ER-------------------------------------DLFSWNVMLTGYVRNCRL 127
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A +F M ++DV +W++L+ G A +G+ +E+ +F M I++ G+L A
Sbjct: 128 GDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE----KNSISWNGLLAAY 183
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440
H G++EE F+ D I N + G V +L + R L K D + +
Sbjct: 184 VHNGRIEEACLLFESKSDWDLISWNCL---MGGFVRKKKLGDARWL-FDKMPVRDAISWN 239
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIK 465
+ + + + + R+L D+S +
Sbjct: 240 TMISGYAQGGGLSQARRLFDESPTR 264
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 177/554 (31%), Positives = 257/554 (46%), Gaps = 99/554 (17%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP---- 68
++C +LR+ KQI A + LR + +V+ A N+ K I P
Sbjct: 92 QRCNDLRSFKQIHAQL-----------LRSTLVDNDLVVTKAANFFGKHVTDIRYPCNFL 140
Query: 69 -------DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
+F N II G P A+ +Y + P+ +T VLK+C R
Sbjct: 141 KQFDWSFSSFPCNLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGI 200
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
+H VK + FV+NS ++ ++ CGD AS +FD DVV+W+ L +GY
Sbjct: 201 AEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGY 260
Query: 182 ARRGELSMARSLFDEMPV------------------------------------RDLVSW 205
+ G + A +LF M V ++LV
Sbjct: 261 MKAGLFNDAVALFLRMDVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVS 320
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N ++ Y K + A LF+E+P++D+VSW +MISG V +++L++F EM G
Sbjct: 321 NTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFE 380
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD V + S+L+ACA LG L+ G+ VH +D + V G +LIDMYAKCG IE A +
Sbjct: 381 PDGVILTSVLSACASLGLLDYGRWVH-EYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQ 439
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+F + +++ TW+ IGGLA +G +E++ F + RP EITF+ V AC H+G
Sbjct: 440 MFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGL 499
Query: 386 VEEGKKYFKLMRD-EYNIEPNIRHYG---------------------------------- 410
V+EG+ YFK M YN+ P + HYG
Sbjct: 500 VDEGRSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIGAL 559
Query: 411 -----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
+G+VEL K + N ESG YVLLSN YA+ +W V VR+LM + I
Sbjct: 560 LSASSTYGNVELTPEMLKTVRNFECQESGVYVLLSNWYANNKKWAEVRSVRRLMKEKGIS 619
Query: 466 KQPGCSLIEADDKA 479
K PG SLI D K+
Sbjct: 620 KAPGSSLIRVDGKS 633
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 179/541 (33%), Positives = 266/541 (49%), Gaps = 100/541 (18%)
Query: 36 DSSALRELIYSGSVVIPGAI-----NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAV 90
D R+L+ S +V+I G + A ++F + E D +NT++ G AQ+ DA
Sbjct: 119 DEMPERDLV-SWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDAR 177
Query: 91 FLYTQM-EKCSIKPNKFTFSFVL-----KACTRLLYRNM-----------GFCVHGKIVK 133
++ +M EK + N ++V +AC R GF KIV+
Sbjct: 178 SVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVE 237
Query: 134 YGFEFNRF-VR-----NSLIYFHANCGDLNTASVLFDGDAKMDV---------------- 171
F+ VR N++I +A G ++ A LFD DV
Sbjct: 238 ARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMV 297
Query: 172 ---------------VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG 216
V+W+++ AGY + + MA+ LFD MP R++ +WN MITGYA+ G
Sbjct: 298 EEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCG 357
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
++ +A LF+++PKRD VSW AMI+GY G + +AL +F +M G R + + S L+
Sbjct: 358 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALS 417
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
CAD+ LE+GK++H L+ + GNAL+ MY KCGSIE A ++F M +D+
Sbjct: 418 TCADVVALELGKQLHGRLVKGGYETGCFV-GNALLLMYCKCGSIEEANDLFKEMAGKDIV 476
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+W+T+I G + HGF E ++ F M+R ++P + T V VL ACSH G V++G++YF M
Sbjct: 477 SWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTM 536
Query: 397 RDEYNIEPNIRHYG---------------------------------------VHGDVEL 417
+Y + PN +HY VHG+ EL
Sbjct: 537 TQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTEL 596
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
A ++ M + SG YVLLSN+YAS G W V K+R M D +KK PG S IE +
Sbjct: 597 AETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQN 656
Query: 478 K 478
K
Sbjct: 657 K 657
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 127/262 (48%), Gaps = 13/262 (4%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N I + G N A +F + V+++ + +GY R GE +AR LFDEMP RDLV
Sbjct: 68 NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLV 127
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWNVMI GY + + KA ELF +P+RDV SWN M+SGY G A +F+ M
Sbjct: 128 SWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM---- 183
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
+DV+ +LL+A +E C L A ++ N L+ + K I A
Sbjct: 184 PEKNDVSWNALLSAYVQNSKMEEA----CMLFKSRENWA-LVSWNCLLGGFVKKKKIVEA 238
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+ F M RDV +W+T+I G A G +E+ +F E V T+ ++
Sbjct: 239 RQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV----FTWTAMVSGYIQN 294
Query: 384 GKVEEGKKYFKLMRDEYNIEPN 405
VEE ++ F M + + N
Sbjct: 295 RMVEEARELFDKMPERNEVSWN 316
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 153/507 (30%), Positives = 251/507 (49%), Gaps = 81/507 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I ++F ++ + + II G ++ +A+ +++M + ++ + +TF+ L
Sbjct: 165 GKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIAL 224
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC N G +H + +K GF+ + FV N+L + CG L LF+ + DVV
Sbjct: 225 KACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVV 284
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL-------------------VSW-------- 205
+W+++ + G+ A F M D+ + W
Sbjct: 285 SWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALI 344
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
N ++T YAK G++ ++ +F+E+ +RD+VSW+ +I+GY G +A
Sbjct: 345 LHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAF 404
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM-TSGVAKVLHGNALID 312
E+ MR G +P + + S+L+AC ++ LE GK++H +L + A VL +ALI+
Sbjct: 405 ELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVL--SALIN 462
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY KCGSIE A +F + D+ +W+ +I G A HG++ E I +F ++ R+ +RP +T
Sbjct: 463 MYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVT 522
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+GVL ACSHAG V+ G +YF M +Y I P+ HYG
Sbjct: 523 FIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAM 582
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
VHGDVE GR +R+L + + +G ++ L+NIYAS+G+W
Sbjct: 583 PFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAA 642
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDKAF 480
+RKLM + K+PG S I+ D F
Sbjct: 643 DIRKLMKSKGVIKEPGWSWIKVKDLVF 669
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 152/353 (43%), Gaps = 72/353 (20%)
Query: 49 VVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFT 107
+V G + A +MF K+++ D + T+I G + + +A+ L+ M + ++ + F
Sbjct: 59 LVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFI 118
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
S KAC N G +HG VK G + FV G A
Sbjct: 119 LSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFV----------------------GSA 156
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
+D+ Y + G++ R +F EMP+R++VSW +ITG +
Sbjct: 157 LLDM---------YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVR------------- 194
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
G NK+AL F EM D T L ACAD G L G
Sbjct: 195 ------------------AGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYG 236
Query: 288 KKVHCTLL----DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIG 343
+++H + D++S VA N L MY KCG +E + +F M RDV +W+T+I
Sbjct: 237 REIHAQAMKKGFDVSSFVA-----NTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIIT 291
Query: 344 GLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
L G E ++ F M+ V P E TF V+ C++ ++E G++ L+
Sbjct: 292 TLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALI 344
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 2/192 (1%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
DL N + K G + A +F+++ ++D +SW +ISGYV + +AL +F+ MR
Sbjct: 48 DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107
Query: 261 -SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
G R D + AC D+ G+ +H + T V V G+AL+DMY K G
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVK-TGLVNSVFVGSALLDMYTKNGK 166
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I VF M R+V +W+ +I GL G+ +E++ F EM R +V TF L A
Sbjct: 167 IFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKA 226
Query: 380 CSHAGKVEEGKK 391
C+ +G + G++
Sbjct: 227 CADSGALNYGRE 238
>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 612
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 152/413 (36%), Positives = 231/413 (55%), Gaps = 45/413 (10%)
Query: 102 KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASV 161
+P+ T++ +L+AC RL ++ E + NS++ + GDL A
Sbjct: 154 RPDAVTWNTLLRACLRLGL----LPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARN 209
Query: 162 LFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA 221
LFDG A+ DVV W+S+ +GY+R G++ AR +FD MP RD+VSWN M+ GYA+ G++E A
Sbjct: 210 LFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMA 269
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLSLLTACAD 280
+F+ +PKR +VSWN +++ Y ++ L +F+ M + G P++ T +S+LTACA+
Sbjct: 270 RLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACAN 329
Query: 281 LGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
LGDLE G+ VH + + V VL L+ MYAKCG +E A E+F M ++ V +W+
Sbjct: 330 LGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWN 389
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
++I G HG +E+++ +F EM+R RP E TF+ VL +C+H G V EG F M
Sbjct: 390 SMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRF 449
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y+IEP H+G +++LG
Sbjct: 450 YSIEPKSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMSASQTQNNIKLGEF 509
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
K+L+ MR E G Y+LLSNIYA+ G W+ VEKVRK+M++ ++K G SL+
Sbjct: 510 VGKKLIEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 41/245 (16%)
Query: 158 TASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGE 217
+A L + D V W++L R G L AR LFDEMP RD+VS+N M+ GY +G+
Sbjct: 144 SARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGD 203
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
+ A LF+ + +RDVV+WN+MISGY G + A +MF+ M ER D V+ S+L
Sbjct: 204 LAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMP---ER-DVVSWNSMLDG 259
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
A GD+E+ + VF GM R + +
Sbjct: 260 YAQAGDVEMARL------------------------------------VFDGMPKRSIVS 283
Query: 338 WSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
W+ ++ A E + +F M P E TFV VL AC++ G +E+G+ L+
Sbjct: 284 WNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLV 343
Query: 397 RDEYN 401
++ ++
Sbjct: 344 QERWD 348
>gi|356498888|ref|XP_003518279.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 552
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 149/485 (30%), Positives = 258/485 (53%), Gaps = 74/485 (15%)
Query: 57 YAHKMFVKITE-PDTFMYNTIIRGSAQSQNPLD-AVFLYTQMEKCSIKPNKFTFSFVLKA 114
YAH++F + P +F++ ++IR Q L + Y++M + + P+ FTFS +L A
Sbjct: 62 YAHQLFDTMPNCPSSFLWTSLIRALLSHQAHLHHCISTYSRMHQNGVLPSGFTFSSILSA 121
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C R+ G VH ++++ GF N+ V+ +L+ +A G ++ A +FDG DVVAW
Sbjct: 122 CGRVPALFEGKQVHARVMQSGFHGNKIVQTALLDMYAKSGCISDARAVFDGMDDRDVVAW 181
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+++ GYA+ G + A+ LFD+M R+ +W M+ GYA +M+ A +L++ + ++ V
Sbjct: 182 TAMVCGYAKVGMMVDAQWLFDKMGERNSFTWTAMVAGYANCEDMKTAKKLYDVMNDKNEV 241
Query: 235 SWNAMISGY----------------------------VLC----GMNKQALEMFEEMRSV 262
+W AMI+GY + C G K+A++M+E+MR
Sbjct: 242 TWVAMIAGYGKLGNVREARRVFDGIPVPQGASACAAMLACYAQHGYAKEAIDMYEKMREA 301
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
+ +V M+ ++ACA L D+ + + L + ++ ALI M++KCG+I
Sbjct: 302 KIKITEVAMVGAISACAQLRDIRMSNTLTGHLEEGCCDRTHIV-STALIHMHSKCGNINL 360
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A+ F MR RDV T+S +I A HG ++++I +F +MQ+ ++P ++TF+GVL AC
Sbjct: 361 ALSEFTTMRYRDVYTYSAMIAAFAEHGKSQDAIDLFLKMQKEGLKPNQVTFIGVLNACGS 420
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
+G +EEG ++F++M + IEP HY
Sbjct: 421 SGYIEEGCRFFQIMTGVFGIEPLPEHYTCIVDLLGKAGQLERAYDLIKQNASSADATTWG 480
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
++G+VELG +A + L + ++SG+YVLL+N YAS+ +W ++V+KL+ +
Sbjct: 481 SLLATCRLYGNVELGEIAARHLFEIDPEDSGNYVLLANTYASKDKWEHAQEVKKLISEKG 540
Query: 464 IKKQP 468
+KK+P
Sbjct: 541 MKKKP 545
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVI----PGAINYAHKMFVKITEPDT 70
C LR ++ T+ G + R I S +++ G IN A F + D
Sbjct: 317 CAQLRDIRMSN---TLTGHLEEGCCDRTHIVSTALIHMHSKCGNINLALSEFTTMRYRDV 373
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+ Y+ +I A+ DA+ L+ +M+K +KPN+ TF VL AC Y G C +
Sbjct: 374 YTYSAMIAAFAEHGKSQDAIDLFLKMQKEGLKPNQVTFIGVLNACGSSGYIEEG-CRFFQ 432
Query: 131 IVK--YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-KMDVVAWSSLTA-----GYA 182
I+ +G E ++ G L A L +A D W SL A G
Sbjct: 433 IMTGVFGIEPLPEHYTCIVDLLGKAGQLERAYDLIKQNASSADATTWGSLLATCRLYGNV 492
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANEL 224
GE++ AR LF+ P D ++ ++ YA + + E A E+
Sbjct: 493 ELGEIA-ARHLFEIDP-EDSGNYVLLANTYASKDKWEHAQEV 532
>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
Length = 612
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 152/413 (36%), Positives = 231/413 (55%), Gaps = 45/413 (10%)
Query: 102 KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASV 161
+P+ T++ +L+AC RL ++ E + NS++ + GDL A
Sbjct: 154 RPDAVTWNTLLRACLRLGL----LPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARN 209
Query: 162 LFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA 221
LFDG A+ DVV W+S+ +GY+R G++ AR +FD MP RD+VSWN M+ GYA+ G++E A
Sbjct: 210 LFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMA 269
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLSLLTACAD 280
+F+ +PKR +VSWN +++ Y ++ L +F+ M + G P++ T +S+LTACA+
Sbjct: 270 RLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACAN 329
Query: 281 LGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
LGDLE G+ VH + + V VL L+ MYAKCG +E A E+F M ++ V +W+
Sbjct: 330 LGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWN 389
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
++I G HG +E+++ +F EM+R RP E TF+ VL +C+H G V EG F M
Sbjct: 390 SMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRF 449
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y+IEP H+G +++LG
Sbjct: 450 YSIEPKSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMSASQTQNNIKLGEF 509
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
K+L+ MR E G Y+LLSNIYA+ G W+ VEKVRK+M++ ++K G SL+
Sbjct: 510 VGKKLIEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 41/245 (16%)
Query: 158 TASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGE 217
+A L + D V W++L R G L AR LFDEMP RD+VS+N M+ GY +G+
Sbjct: 144 SARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGD 203
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
+ A LF+ + +RDVV+WN+MISGY G + A +MF+ M ER D V+ S+L
Sbjct: 204 LAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMP---ER-DVVSWNSMLDG 259
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
A GD+E+ + VF GM R + +
Sbjct: 260 YAQAGDVEMARL------------------------------------VFDGMPKRSIVS 283
Query: 338 WSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
W+ ++ A E + +F M P E TFV VL AC++ G +E+G+ L+
Sbjct: 284 WNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLV 343
Query: 397 RDEYN 401
++ ++
Sbjct: 344 QERWD 348
>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
Length = 565
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 164/550 (29%), Positives = 263/550 (47%), Gaps = 87/550 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+KC ++ LKQI +L+ + LI + G I YA +F + + ++
Sbjct: 13 EKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYV 72
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N++I+G + A+F+Y +M++ P+ FTF FVLK C+ + G VH +IV
Sbjct: 73 WNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIV 132
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K GFE + + + L+ + +CGDLN+ +F+ K +VVAW+SL AG+ + A
Sbjct: 133 KTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALR 192
Query: 193 LFDEM-----------------------------------------PVRDLVSWNVMITG 211
LF +M P +NV++
Sbjct: 193 LFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILAT 252
Query: 212 -----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
YAK G++ A LF+++P+R++V WN+MIS + G +AL +F +M G P
Sbjct: 253 AIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVP 312
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
+ T LS++ AC L G+ +H +L + V G AL+DMYAK G + A+++
Sbjct: 313 NKATFLSVIRACTHLRFRSTGQSLHARVLK-ANFHEFVAIGTALMDMYAKSGDADTALKI 371
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEITFVGVLVACSHAGK 385
F +R +DV W+T+I GLA G +E++ +FR M + +V P +IT++ VL ACSH G
Sbjct: 372 FSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGL 431
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYG----------------------------------- 410
VEEG+K+F M + Y IEP + HYG
Sbjct: 432 VEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELLVKMPTQPNATILSSIL 491
Query: 411 ----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
++G+V L ++ ++ SG YVLLSNI+A W ++ R ++ I K
Sbjct: 492 NGCEMYGNVGLANRVKSHIVELKNSSSGVYVLLSNIHAKACNWEEMKLARDILKHKKIGK 551
Query: 467 QPGCSLIEAD 476
G S +E +
Sbjct: 552 TLGNSFVEMN 561
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA--KCGSIERAIEVF 327
T+LS L C + +L K++H +L+ TS V ++ + LID A + G IE A VF
Sbjct: 7 TILSFLEKCKTMKEL---KQIH-SLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVF 62
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
V W+++I G G ++ M+ EMQR P TF VL CS
Sbjct: 63 DQTDQLTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCS 116
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 163/502 (32%), Positives = 248/502 (49%), Gaps = 81/502 (16%)
Query: 23 QIQALVTINGFNSDSSALRELIYSGSVVIPGA---INYAHKMFVKITEPDTFMYNTIIRG 79
+I L + GF D I +G + + + I A +F K+ PD +N II G
Sbjct: 142 EIHGLASKLGFVDDP-----FIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDG 196
Query: 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN 139
Q+ + DA+ L+ M +KP+ VL AC + G +H + G+ +
Sbjct: 197 YCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAID 256
Query: 140 RFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV 199
++ +LI +ANCG ++ +AR ++D +
Sbjct: 257 SHLQTALINMYANCGAMD-------------------------------LARKIYDGLSS 285
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
+ L+ M++GYAK G ++ A +F+++ +RD+V W+AMISGY ++AL++F+EM
Sbjct: 286 KHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEM 345
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCG 318
PD +TMLS+++AC+ +G L +H T +D SG + L NALIDMYAKCG
Sbjct: 346 LQKRSVPDQITMLSVISACSHVGALAQANWIH-TYVD-RSGFGRALSVNNALIDMYAKCG 403
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
++ +A EVF M ++V +WS++I A HG A+ +I +FR M+ + + P +TF+GVL
Sbjct: 404 NLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLY 463
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------- 410
AC HAG VEEG+K F M +E+ I P HYG
Sbjct: 464 ACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNV 523
Query: 411 -----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459
VHG+ ELG A KRLL + D G V+LSNIYA WN V +RK M
Sbjct: 524 IIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSM 583
Query: 460 DDSDIKKQPGCSLIEADDKAFL 481
I K+ S IE +++ +
Sbjct: 584 SYKGISKEKASSRIEINNQVHM 605
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 13/215 (6%)
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP-DDVTMLSLLTACADLG 282
+F+++P N ++ ++ + ++ +R++ D + SLL A + +
Sbjct: 76 VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
G ++H L V LI MYA C I A +F M D W+ +I
Sbjct: 136 AFNHGLEIH-GLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMII 194
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE-YN 401
G +G ++++ +F +M+ ++P + VL AC HAG + G+ + ++D Y
Sbjct: 195 DGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYA 254
Query: 402 IEPN-----IRHYGVHGDVELGR-----LANKRLL 426
I+ + I Y G ++L R L++K L+
Sbjct: 255 IDSHLQTALINMYANCGAMDLARKIYDGLSSKHLI 289
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 169/535 (31%), Positives = 264/535 (49%), Gaps = 103/535 (19%)
Query: 44 IYSGSVVIPGAINY-----AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-E 97
++S +V++ G + A ++F + E D +N+++ G AQ+ +A ++ M E
Sbjct: 111 LFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE 170
Query: 98 KCSIKPNKFTFSFVL-----KACTRLLYRNM-------------GFCVHGKIVKYGFEFN 139
K SI N ++V +AC LL+ + GF K+ + F+
Sbjct: 171 KNSISWNGLLAAYVHNGRIEEAC--LLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFD 228
Query: 140 RF-VR-----NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+ VR N++I +A G L+ A LFD DV W+++ +GY + G L A++
Sbjct: 229 KMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTF 288
Query: 194 FDEMP-------------------------------VRDLVSWNVMITGYAKQGEMEKAN 222
FDEMP R++ SWN MITGY + G++ +A
Sbjct: 289 FDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQAR 348
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ F+ +P+RD VSW A+I+GY G ++AL MF E++ GE + T L+ CAD+
Sbjct: 349 KFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIA 408
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
LE+GK++H + M G + GNAL+ MY KCGSI+ A + F G+ ++DV +W+T++
Sbjct: 409 ALELGKQIHGQAVKMGYGTGCFV-GNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTML 467
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G A HGF +++ +F M+ V+P EIT VGVL ACSH G ++ G +YF M +Y +
Sbjct: 468 AGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGV 527
Query: 403 EPNIRHYG---------------------------------------VHGDVELGRLANK 423
P +HY +HG+ ELG A +
Sbjct: 528 IPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAE 587
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ M SG YVLLSN+YA+ G W +K+R M D ++K PG S +E +K
Sbjct: 588 MVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNK 642
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 183/386 (47%), Gaps = 28/386 (7%)
Query: 12 WKKC--TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
W K T++R AL N SS + SG + N A +F ++ E D
Sbjct: 52 WNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISG-YLRNSKFNLARNLFDQMPERD 110
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKAC---TRLLYRNMGF 125
F +N ++ G ++ DA L+ M EK + N + R ++ NM
Sbjct: 111 LFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP- 169
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
E N N L+ + + G + A +LF+ + D+++W+ L G+ R+
Sbjct: 170 -----------EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKK 218
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+L AR LFD+MPVRD +SWN MI+GYA+ G + +A LF+E P RDV +W AM+SGYV
Sbjct: 219 KLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQ 278
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
GM +A F+EM ++V+ +++ +++ +++ ++ +
Sbjct: 279 NGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFESM-----PCRNIS 329
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
N +I Y + G I +A + F M RD +W+ +I G A G EE++ MF E+++
Sbjct: 330 SWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKK 391
TF L C+ +E GK+
Sbjct: 390 ESLNRATFGCALSTCADIAALELGKQ 415
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 13/223 (5%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYF-HANCGDLNTASVLFDGDAKM---DVVAWSSLTAGYA 182
+HG I+ + R R I F H + + SV + ++ D++ W+ + +
Sbjct: 1 MHGGIMLRIYNNLRVRRVCTINFGHTSTSTRRSESVTNNNKPRVKDPDILKWNKAISTHM 60
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
R G A +F+ MP R VS+N MI+GY + + A LF+++P+RD+ SWN M++G
Sbjct: 61 RNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTG 120
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
YV A +F+ M D V+ SLL+ A G ++ ++V + + S
Sbjct: 121 YVRNCRLGDARRLFDLM----PEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNS--- 173
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
+ N L+ Y G IE A +F D D+ +W+ L+GG
Sbjct: 174 --ISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGF 214
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 48/265 (18%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D++ WN I+ + + G + A +FN +P+R VS+NAMISGY+ A +F++M
Sbjct: 48 DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
ER + N ++ Y + +
Sbjct: 108 ---ER-------------------------------------DLFSWNVMLTGYVRNCRL 127
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A +F M ++DV +W++L+ G A +G+ +E+ +F M I++ G+L A
Sbjct: 128 GDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE----KNSISWNGLLAAY 183
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440
H G++EE F+ D I N + G V +L + R L K D + +
Sbjct: 184 VHNGRIEEACLLFESKSDWDLISWNCL---MGGFVRKKKLGDARWL-FDKMPVRDAISWN 239
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIK 465
+ + + + + R+L D+S +
Sbjct: 240 TMISGYAQGGGLSQARRLFDESPTR 264
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 45/145 (31%)
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------VHGD 414
L+ + G ++ G +YF M +EY++ P +HY +HG+
Sbjct: 771 LLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEGALLGASRIHGN 830
Query: 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
ELG A + M SG + K+R D ++K PG S E
Sbjct: 831 TELGEKAAQMFFKMGPQNSG-----------------ISKMR----DVGVQKVPGYSWFE 869
Query: 475 ADDK--AFLQYLFNLKPKPNSGNLD 497
+K F LF + + N G L+
Sbjct: 870 VQNKIHTFSVGLFLSRERENIGFLE 894
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 163/523 (31%), Positives = 261/523 (49%), Gaps = 85/523 (16%)
Query: 44 IYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98
IY G+ ++ G++ A ++F + + + +I G AQ +A + +M +
Sbjct: 347 IYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406
Query: 99 CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158
I+PN+ TF +L AC+ G + I++ G+ + VR +L+ +A CG L
Sbjct: 407 SGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKD 466
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF------------------------ 194
A +F+ +K +VVAW+++ Y + + A + F
Sbjct: 467 AHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKS 526
Query: 195 -DEMPV--------------RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
D + + DL N +++ + G++ A LFN++PKRD+VSWN +
Sbjct: 527 SDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTI 586
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
I+G+V G N+ A + F+ M+ G +PD +T LL ACA L G+++H L+ +
Sbjct: 587 IAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLH-ALITEAA 645
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
VL G LI MY KCGSIE A +VF + ++V +W+++I G A HG +E++ +F
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFY 705
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
+MQ+ V+P ITFVG L AC+HAG +EEG +F+ M+ E+NIEP + HYG
Sbjct: 706 QMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRA 764
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
VH +VEL A ++ L + +++G +V+LS
Sbjct: 765 GLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILS 824
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQY 483
NIYA+ G W V K+RK+M D + K+PG S IE D K Y
Sbjct: 825 NIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFY 867
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 207/432 (47%), Gaps = 57/432 (13%)
Query: 15 CTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKIT 66
C + R + +++ L+ G+++D ++ G+ +I G I A K+F +
Sbjct: 221 CADARNVDKGRELYNLILKAGWDTD-------LFVGTALINMHIKCGDIGDATKVFDNLP 273
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
D + ++I G A+ A L+ +ME+ ++P+K F +L+AC G
Sbjct: 274 TRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKK 333
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VH ++ + G++ +V +++ + CG + A +FD +VV+W+++ AG+A+ G
Sbjct: 334 VHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGR 393
Query: 187 LSMARSLFDEM------PVR---------------------------------DLVSWNV 207
+ A F++M P R D
Sbjct: 394 IDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTA 453
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+++ YAK G ++ A+ +F ++ K++VV+WNAMI+ YV AL F+ + G +P+
Sbjct: 454 LLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPN 513
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEV 326
T S+L C LE+GK VH L M +G+ LH NAL+ M+ CG + A +
Sbjct: 514 SSTFTSILNVCKSSDSLELGKWVH--FLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F M RD+ +W+T+I G HG + + F+ MQ ++P +ITF G+L AC+ +
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEAL 631
Query: 387 EEGKKYFKLMRD 398
EG++ L+ +
Sbjct: 632 TEGRRLHALITE 643
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 184/380 (48%), Gaps = 41/380 (10%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A ++F + E D + +N ++ G Q +A L+ QM + S+KP+K TF +L AC
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+ G ++ I+K G++ + FV +LI H CGD+ A+ +FD D+V W+S+
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSM 283
Query: 178 TAGYARRGELSMARSLFDEMPVRDL--------------------------------VSW 205
G AR G A +LF M + V W
Sbjct: 284 ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGW 343
Query: 206 NV-------MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
+ +++ Y K G ME A E+F+ V R+VVSW AMI+G+ G +A F +
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M G P+ VT +S+L AC+ L+ G+++ +++ G + AL+ MYAKCG
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR-TALLSMYAKCG 462
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
S++ A VF + ++V W+ +I H + ++A F+ + + ++P TF +L
Sbjct: 463 SLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILN 522
Query: 379 ACSHAGKVEEGK-KYFKLMR 397
C + +E GK +F +M+
Sbjct: 523 VCKSSDSLELGKWVHFLIMK 542
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 181/363 (49%), Gaps = 42/363 (11%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
DT N ++ +++ +A+ + +++ I+ + T+S +L+ C + G ++
Sbjct: 74 DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
I K G + + F+ N+LI +A CG+ +A +FD + DV +W+ L GY + G
Sbjct: 134 NHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193
Query: 189 MARSLFDEMPVRDLV---------------------------------SWNV-------M 208
A L ++M V+D V W+ +
Sbjct: 194 EAFKLHEQM-VQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
I + K G++ A ++F+ +P RD+V+W +MI+G G KQA +F+ M G +PD
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
V +SLL AC LE GKKVH + ++ ++ G A++ MY KCGS+E A+EVF
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDT-EIYVGTAILSMYTKCGSMEDALEVFD 371
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
++ R+V +W+ +I G A HG +E+ F +M + P +TF+ +L ACS ++
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431
Query: 389 GKK 391
G++
Sbjct: 432 GQQ 434
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 207/431 (48%), Gaps = 55/431 (12%)
Query: 15 CTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
C++ LK QIQ + G+ SD L+ + G++ AH++F KI++ +
Sbjct: 423 CSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKC--GSLKDAHRVFEKISKQNVV 480
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+N +I Q + +A+ + + K IKPN TF+ +L C +G VH I
Sbjct: 481 AWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLI 540
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+K G E + V N+L+ NCGDL +A LF+ K D+V+W+++ AG+ + G+ +A
Sbjct: 541 MKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAF 600
Query: 192 SLFDEM------PVR---------------------------------DLVSWNVMITGY 212
F M P + D++ +I+ Y
Sbjct: 601 DYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMY 660
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
K G +E A+++F+++PK++V SW +MI+GY G K+ALE+F +M+ G +PD +T +
Sbjct: 661 TKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFV 720
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR- 331
L+ACA G +E G H + + ++ H ++D++ + G + A+E + M+
Sbjct: 721 GALSACAHAGLIEEGLH-HFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQV 779
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH----AGKVE 387
+ D W L+G H E +A ++L++ P + GV V S+ AG +
Sbjct: 780 EPDSRVWGALLGACQVHLNVE--LAEKAAQKKLELDPND---NGVFVILSNIYAAAGMWK 834
Query: 388 EGKKYFKLMRD 398
E K K+M D
Sbjct: 835 EVAKMRKVMLD 845
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 122/198 (61%), Gaps = 1/198 (0%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D+ WN +I YAK G A ++F+++ ++DV SWN ++ GYV G+ ++A ++ E+M
Sbjct: 144 DIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
+PD T +S+L ACAD +++ G++++ +L + G ALI+M+ KCG I
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK-AGWDTDLFVGTALINMHIKCGDI 262
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A +VF + RD+ TW+++I GLA HG +++ +F+ M+ V+P ++ FV +L AC
Sbjct: 263 GDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRAC 322
Query: 381 SHAGKVEEGKKYFKLMRD 398
+H +E+GKK M++
Sbjct: 323 NHPEALEQGKKVHARMKE 340
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
+D NA+++ G +A+++ E + S + T +LL C +L G+++
Sbjct: 73 KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132
Query: 291 HCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
+ + SGV + N LI+MYAKCG+ A ++F MR++DV +W+ L+GG HG
Sbjct: 133 YNHI--KKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHG 190
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
EE+ + +M + V+P + TFV +L AC+ A V++G++ + L+
Sbjct: 191 LYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLI 237
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 153/507 (30%), Positives = 250/507 (49%), Gaps = 81/507 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I ++F ++ + + II G ++ +A+ +++M + ++ + +TF+ L
Sbjct: 165 GKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIAL 224
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC N G +H + +K GF+ + FV N+L + CG L LF+ + DVV
Sbjct: 225 KACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVV 284
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL-------------------VSW-------- 205
+W+++ + G+ A F M D+ + W
Sbjct: 285 SWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALI 344
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
N ++T YAK G++ ++ +F+E+ +RD+VSW+ +I+GY G +A
Sbjct: 345 LHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAF 404
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM-TSGVAKVLHGNALID 312
E+ MR G +P + + S+L+AC ++ LE GK++H +L + A VL +ALI+
Sbjct: 405 ELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVL--SALIN 462
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY KCGSIE A +F + D+ +W+ +I G A HG++ E I +F ++ R+ +RP +T
Sbjct: 463 MYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVT 522
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+GVL ACSHAG V+ G YF M +Y I P+ HYG
Sbjct: 523 FIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAM 582
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
VHGDVE GR +R+L + + +G ++ L+NIYAS+G+W
Sbjct: 583 PFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAA 642
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDKAF 480
+RKLM + K+PG S I+ D F
Sbjct: 643 DIRKLMKSKGVIKEPGWSWIKVKDLVF 669
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 152/353 (43%), Gaps = 72/353 (20%)
Query: 49 VVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFT 107
+V G + A +MF K+++ D + T+I G + + +A+ L+ M + ++ + F
Sbjct: 59 LVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFI 118
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
S KAC N G +HG VK G + FV G A
Sbjct: 119 LSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFV----------------------GSA 156
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
+D+ Y + G++ R +F EMP+R++VSW +ITG +
Sbjct: 157 LLDM---------YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVR------------- 194
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
G NK+AL F EM D T L ACAD G L G
Sbjct: 195 ------------------AGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYG 236
Query: 288 KKVHCTLL----DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIG 343
+++H + D++S VA N L MY KCG +E + +F M RDV +W+T+I
Sbjct: 237 REIHAQAMKKGFDVSSFVA-----NTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIIT 291
Query: 344 GLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
L G E ++ F M+ V P E TF V+ C++ ++E G++ L+
Sbjct: 292 TLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALI 344
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 2/192 (1%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
DL N + K G + A +F+++ ++D +SW +ISGYV + +AL +F+ MR
Sbjct: 48 DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107
Query: 261 -SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
G R D + AC D+ G+ +H + T V V G+AL+DMY K G
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVK-TGLVNSVFVGSALLDMYTKNGK 166
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I VF M R+V +W+ +I GL G+ +E++ F EM R +V TF L A
Sbjct: 167 IFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKA 226
Query: 380 CSHAGKVEEGKK 391
C+ +G + G++
Sbjct: 227 CADSGALNYGRE 238
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 157/508 (30%), Positives = 260/508 (51%), Gaps = 60/508 (11%)
Query: 8 SSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG-AINYAHKMFVKIT 66
+SRL + + Q+ A++ +G ++LR L+ S + P A A +
Sbjct: 18 ASRLLPRRGSAAAGHQLHAVLIKHGLLHHPASLRALL---SRLPPSSASTLALLLSAAPC 74
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL------- 119
+Y+ I A S P ++ ++ ++ + S+ F +LK+C R
Sbjct: 75 SLSPPLYSPAIAALASSPYPAASLAVFNRVSRLSLPIPLPAFPALLKSCARAFNLCAAAD 134
Query: 120 -----YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
+ + G +HG ++K G +R+V+N+L+ + G L A +FDG + V+W
Sbjct: 135 GGGEGFVSKGMELHGCVLKLGCGADRYVQNALVSMYGKLGRLGDARKVFDGMPARNAVSW 194
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
++L A + G+ A + EMP R + WN IT +A+ G+ME A +F E+P RD V
Sbjct: 195 NALVAAHGDVGDSRGAERVSQEMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAV 254
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
SWN++I Y G +AL++F EM+ G P ++T++S+L AC ++G+LE+GK VH
Sbjct: 255 SWNSLIGSYAKLGQCARALKVFREMQDSGVEPTELTLVSVLGACTEIGELELGKGVH-GY 313
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
L +A GNAL+DMYAKCGS+E A +VF M RD++ W+ +I GL+ HG++ E+
Sbjct: 314 LSSKGVLADGYVGNALVDMYAKCGSLELARQVFESMSTRDITCWNAMIVGLSVHGYSREA 373
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
+ +F M +V P +TF+GVL+ CSH+G V+EG+ F+ M ++Y I P ++HYG
Sbjct: 374 LELFNVM---RVEPDHVTFLGVLIVCSHSGLVDEGRVXFRSMTEDYKIVPGVKHYGCMVD 430
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
+HG + A L + + GD
Sbjct: 431 MLCRCGKVAEAYQMLNYMPLKANSVLWKMVLAACRLHGHIHHANKAFHELHQLMPIDDGD 490
Query: 436 YVLLSNIYASRGEWNRVEKVR-KLMDDS 462
+++S+IYA W+ VE +R K+++ S
Sbjct: 491 VIMMSSIYAEGKRWDDVEHLRTKVIEPS 518
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 141/318 (44%), Gaps = 57/318 (17%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------ 197
N+ I HA GD+ A+ +F D V+W+SL YA+ G+ + A +F EM
Sbjct: 226 NAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGSYAKLGQCARALKVFREMQDSGVE 285
Query: 198 PVR-DLVS--------------------------------WNVMITGYAKQGEMEKANEL 224
P LVS N ++ YAK G +E A ++
Sbjct: 286 PTELTLVSVLGACTEIGELELGKGVHGYLSSKGVLADGYVGNALVDMYAKCGSLELARQV 345
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F + RD+ WNAMI G + G +++ALE+F MR PD VT L +L C+ G +
Sbjct: 346 FESMSTRDITCWNAMIVGLSVHGYSREALELFNVMRV---EPDHVTFLGVLIVCSHSGLV 402
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV--FLGMRDRDVSTWSTLI 342
+ G+ ++ + V V H ++DM +CG + A ++ ++ ++ V W ++
Sbjct: 403 DEGRVXFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAEAYQMLNYMPLKANSV-LWKMVL 461
Query: 343 GGLAFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKY--FKLMRDE 399
HG + F E+ +L + ++ + + A EGK++ + +R +
Sbjct: 462 AACRLHGHIHHANKAFHELHQLMPIDDGDVIMMSSIYA--------EGKRWDDVEHLRTK 513
Query: 400 YNIEPNIRHYGVHGDVEL 417
IEP+ +G H V++
Sbjct: 514 V-IEPSFWKHGAHSQVDV 530
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 152/480 (31%), Positives = 246/480 (51%), Gaps = 85/480 (17%)
Query: 44 IYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-SIK 102
+Y+ S+++P A K+F ++ + D + T+I G A+ P +A ++ +M S+
Sbjct: 175 MYTSSMLLPDA----RKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVW 230
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
PN+ T A ++ +G VH IV+ G + + N+L+ CG +
Sbjct: 231 PNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCV------ 284
Query: 163 FDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222
+ A+ +FD MP++D+ SW M++ YAK G++E A
Sbjct: 285 -------------------------AAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAA 319
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+LF E+P R+VVSW+ M++ Y M +A+ +F +M + G P D T++S+L+ACA L
Sbjct: 320 KLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLC 379
Query: 283 DLEVGKKVHCTLL-----DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
L+VG ++ T + ++T ++ NA IDM+AKCG + A +F M D++V +
Sbjct: 380 SLDVGTWLYDTYIVSHKVELTPNLS-----NAFIDMFAKCGDVGAASRLFSNMEDKNVVS 434
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+T+I HG EE++ +F+E + + P E T++GVL ACSH G V EG+ +FK M+
Sbjct: 435 WNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMK 494
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
Y IEP HY +HG+VE+G
Sbjct: 495 IVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIG 554
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ A +L + +SG YVL+S IYAS+ +W +V+ +R +M D +KK PGCS IE D K
Sbjct: 555 KCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGK 614
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 175/397 (44%), Gaps = 68/397 (17%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
N H + + C + R L Q+QAL+T++G S+ L+ ++ P + +A
Sbjct: 27 NLVVTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLAFCALSDPPRLAHAAA 86
Query: 61 MFVKITE-PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
+ + TE P+ +M T++RG ++ P A+ L+ ++ + + + T F +KA
Sbjct: 87 VLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAAT-- 144
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
+ +H K GF V+A ++L
Sbjct: 145 SSSPTEAIHCVAFKRGF------------------------------IGQSVLAGNALVH 174
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
Y L AR LFDEM RD+VSW +I GYA+ G ++A +F + + V W
Sbjct: 175 MYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESV-W--- 230
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
P++VT+++ +A +G L +G+ VH +++ +
Sbjct: 231 --------------------------PNEVTLVAAASAAGQMGLLGLGRTVHQCIVE-SG 263
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
G V NAL+DM+ KCG + A EVF GM +DV +W++++ A G E + +F+
Sbjct: 264 GRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFK 323
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
E+ V +++ ++ A SHA +E + F M
Sbjct: 324 EIPNRNV----VSWSCMVAAYSHANMPDEAIRIFNDM 356
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 167/543 (30%), Positives = 268/543 (49%), Gaps = 87/543 (16%)
Query: 15 CTNLRTLKQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
C+N + L + A I+G+ S+ SAL +L S V+ YA K+F + E DT
Sbjct: 121 CSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVV-----YARKVFDGMPERDTV 175
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
++NT+I G ++ D++ L+ +M ++ + T + VL A L +G +
Sbjct: 176 LWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLA 235
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+K GF F +V LI ++ CGD+NTA +LF + D++A++++ +G+ G +
Sbjct: 236 LKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSV 295
Query: 192 SLFDEM--------------------P--------------VRDLVSWNVMITG-----Y 212
LF E+ P V+ + N ++ Y
Sbjct: 296 KLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIY 355
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
K E++ A LF+E P++ VV+WNAMISGY G + A+ +F+EM P+ VT+
Sbjct: 356 NKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTIT 415
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
++L+ACA LG L GK VH L+ + + AL+DMYAKCG+I A ++F M +
Sbjct: 416 TILSACAQLGSLSFGKWVH-HLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSE 474
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
++ TW+T+I G HG+ E++ ++ EM L P+ +TF+ VL ACSHAG V EG++
Sbjct: 475 KNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEI 534
Query: 393 FKLMRDEYNIEPNIRHYG---------------------------------------VHG 413
F M ++Y IEP I HY +H
Sbjct: 535 FHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHK 594
Query: 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
D ++ RLA++RL + G YVLLSNIY+ + + +R+++ + K PGC+LI
Sbjct: 595 DTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLI 654
Query: 474 EAD 476
E +
Sbjct: 655 EVN 657
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 168/378 (44%), Gaps = 71/378 (18%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKM 61
+ +R+ L K + L Q A +NG+ D + L +L + + A +A +
Sbjct: 9 KLSRNTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKL--TQKLFDFSATRHARAL 66
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CSIKPNKFTFSFVLKACTRLLY 120
F + +PD F++N ++RG + + +P ++ LYT + + ++ P+ FT++F + AC+
Sbjct: 67 FFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSN--- 123
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
L+ HA+ S +F G A +D+
Sbjct: 124 ----------------------DKHLMLLHAHSIIDGYGSNVFVGSALVDL--------- 152
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
Y + + AR +FD MP RD V WN MI G K N F++
Sbjct: 153 YCKFSRVVYARKVFDGMPERDTVLWNTMINGLVK-------NCCFDD------------- 192
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
++++F EM + G R D T+ ++L A A+L +L+VG + C L + G
Sbjct: 193 -----------SIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFG 241
Query: 301 VAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
VL G LI +Y+KCG + A +F + D+ ++ +I G +G E S+ +FR
Sbjct: 242 FCDYVLTG--LISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFR 299
Query: 360 EMQRLKVRPTEITFVGVL 377
E+ R + T VG++
Sbjct: 300 ELLFSGERVSSSTIVGLI 317
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 21/250 (8%)
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDDVTMLSLLTACA 279
A LF VPK D+ +N ++ G+ L ++ ++ +R + PD+ T + AC+
Sbjct: 63 ARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACS 122
Query: 280 DLGDLEVGKKVHCTLLDMTSGV----AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+ H LL S + + V G+AL+D+Y K + A +VF GM +RD
Sbjct: 123 N--------DKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDT 174
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
W+T+I GL + ++SI +FREM VR T VL A + +++ G L
Sbjct: 175 VLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCL 234
Query: 396 MRD------EYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+Y + I Y GDV RL +R+ R D ++S A+ G
Sbjct: 235 ALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRI--NRPDLIAYNAMISGFTANGGTE 292
Query: 450 NRVEKVRKLM 459
V+ R+L+
Sbjct: 293 CSVKLFRELL 302
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 249/488 (51%), Gaps = 72/488 (14%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
L QI A +G + + L I + I YA ++F + P+ F++N+II+
Sbjct: 25 LTQIHAHFLRHGLHQSNQILAHFISVCASF--NRIAYADRLFSQSHNPNIFLFNSIIKAH 82
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
+ S ++ L++ M+ I P+++TF+ +LK+C L ++G CV ++ + GF
Sbjct: 83 SLSVPFHQSLLLFSSMKNHRIVPDQYTFAPLLKSCANLCEYSLGQCVISEVFRRGFYCFG 142
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
+R ++ + C + A W +FDEM R
Sbjct: 143 SIRIGVVELYVCCEKMEDA--------------WK-----------------MFDEMSHR 171
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D+V WN+MI G+ K G ++ LF ++ +R +VSWN +IS + +ALE+F++M
Sbjct: 172 DVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELFQQME 231
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
G +PD+VT++++L C+ LG LEVG+++H + V GN+LID Y KCG+I
Sbjct: 232 EHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCKCGNI 291
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
E+A +F M + V +W+T+I G A +G E +I +F EM++ ++P + TFV VL AC
Sbjct: 292 EKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVAVLTAC 351
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
H+G +E+G++ F M ++Y I+P + H+G
Sbjct: 352 VHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGRGGCVEEAHKLIKSMPMQPNATL 411
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
HG+++L +A K L+++ SG+YVLLSN+ A G W VE VR+ M +
Sbjct: 412 WGAVLGACRTHGNLKLAEMAVKELISLEPWNSGNYVLLSNMLAEEGRWEEVENVRQWMRE 471
Query: 462 SDIKKQPG 469
+KK PG
Sbjct: 472 KSVKKAPG 479
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 154/504 (30%), Positives = 256/504 (50%), Gaps = 79/504 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+ ++F K+ D +NT+I G A+ +A +Y QM++ + PNK T+ +L
Sbjct: 276 GSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILL 335
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + G +H ++ K GF + V+N+LI ++ CG + A ++FD + DV+
Sbjct: 336 NACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVI 395
Query: 173 AWSSLTAGYARRGELSMARSLFDEM------PVR-------------DLVSW-------- 205
+W+++ G A+ G + A +++ EM P R + W
Sbjct: 396 SWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQV 455
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
N ++ Y+ G ++ A ++F+ + +RD+V++NAMI GY + K+AL
Sbjct: 456 VEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEAL 515
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
++F+ ++ G +PD VT +++L ACA+ G LE +++H TL+ + GNAL+
Sbjct: 516 KLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIH-TLVRKGGFFSDTSVGNALVST 574
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YAKCGS A VF M R+V +W+ +IGG A HG ++++ +F M+ V+P +TF
Sbjct: 575 YAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTF 634
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------- 410
V +L ACSHAG +EEG++YF M ++ I P I HYG
Sbjct: 635 VSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMP 694
Query: 411 ----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
+HG+V + A + L + D + YV LS++YA+ G W+ K
Sbjct: 695 FQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAK 754
Query: 455 VRKLMDDSDIKKQPGCSLIEADDK 478
+RKLM+ + K+PG S I+ DK
Sbjct: 755 LRKLMEQRGVTKEPGRSWIQVGDK 778
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 193/385 (50%), Gaps = 42/385 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+I A ++F K+ + + I G A A ++ +ME+ + PN+ T+ VL
Sbjct: 175 GSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVL 234
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A + G VH +I+ G E + V +L+ +A CG +F+ D++
Sbjct: 235 NAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLI 294
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP---------------------------------- 198
AW+++ G A G A ++++M
Sbjct: 295 AWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRV 354
Query: 199 -----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
D+ N +I+ Y++ G ++ A +F+++ ++DV+SW AMI G G +AL
Sbjct: 355 AKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEAL 414
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALID 312
+++EM+ G P+ VT S+L AC+ LE G+++H +++ +G+A H GN L++
Sbjct: 415 TVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVE--AGLATDAHVGNTLVN 472
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+ CGS++ A +VF M RD+ ++ +IGG A H +E++ +F +Q ++P ++T
Sbjct: 473 MYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVT 532
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMR 397
++ +L AC+++G +E ++ L+R
Sbjct: 533 YINMLNACANSGSLEWAREIHTLVR 557
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/470 (25%), Positives = 213/470 (45%), Gaps = 57/470 (12%)
Query: 10 RLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
++ K+C ++ L +Q+ + + D + LI + G+I A +++ K++
Sbjct: 28 KMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALI--NMYIQCGSIEEARQVWKKLS 85
Query: 67 --EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
E +N ++ G Q A+ L QM++ + P++ T L +C G
Sbjct: 86 YMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWG 145
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H + ++ G F+ V N ++ +A CG + A +FD K VV+W+ GYA
Sbjct: 146 REIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADC 205
Query: 185 GELSMARSLFDEMPVRDLV-------------------SW-------------------- 205
G A +F +M +V W
Sbjct: 206 GRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVG 265
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
++ YAK G + ++F ++ RD+++WN MI G G ++A E++ +M+ G
Sbjct: 266 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVM 325
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLD--MTSGVAKVLHGNALIDMYAKCGSIERA 323
P+ +T + LL AC + L GK++H + TS + NALI MY++CGSI+ A
Sbjct: 326 PNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGV---QNALISMYSRCGSIKDA 382
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
VF M +DV +W+ +IGGLA GF E++ +++EMQ+ V P +T+ +L ACS
Sbjct: 383 RLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSP 442
Query: 384 GKVEEGKKYFK------LMRDEYNIEPNIRHYGVHGDVELGRLANKRLLN 427
+E G++ + L D + + Y + G V+ R R++
Sbjct: 443 AALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQ 492
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 178/382 (46%), Gaps = 45/382 (11%)
Query: 11 LWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
L C N L K+I + V GF SD LI S G+I A +F K+
Sbjct: 334 LLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRC--GSIKDARLVFDKMVR 391
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
D + +I G A+S +A+ +Y +M++ ++PN+ T++ +L AC+ G +
Sbjct: 392 KDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRI 451
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H ++V+ G + V N+L+ ++ CG + A +FD + D+VA++++ GYA
Sbjct: 452 HQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLG 511
Query: 188 SMARSLFDEMPVRDL-------------------VSW--------------------NVM 208
A LFD + L + W N +
Sbjct: 512 KEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNAL 571
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
++ YAK G A+ +F ++ KR+V+SWNA+I G G + AL++FE M+ G +PD
Sbjct: 572 VSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDI 631
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
VT +SLL+AC+ G LE G++ C++ + + + H ++D+ + G ++ A +
Sbjct: 632 VTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIK 691
Query: 329 GMR-DRDVSTWSTLIGGLAFHG 349
M + W L+G HG
Sbjct: 692 TMPFQANTRIWGALLGACRIHG 713
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 171/344 (49%), Gaps = 42/344 (12%)
Query: 89 AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIY 148
AV + +++ + N + +LK C + G VH I+++ +++ N+LI
Sbjct: 7 AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66
Query: 149 FHANCGDLNTASVLFDGDAKMD--VVAWSSLTAGYARRGELSMARSLFDEMPVRDL---- 202
+ CG + A ++ + M+ V +W+++ GY + G + A L +M L
Sbjct: 67 MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126
Query: 203 ---------------VSW--------------------NVMITGYAKQGEMEKANELFNE 227
+ W N ++ YAK G +E+A E+F++
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+ K+ VVSW I GY CG ++ A E+F++M G P+ +T +S+L A + L+ G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
K VH +L+ + G AL+ MYAKCGS + +VF + +RD+ W+T+IGGLA
Sbjct: 247 KAVHSRILNAGHESDTAV-GTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 305
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
G+ EE+ ++ +MQR V P +IT+V +L AC ++ + GK+
Sbjct: 306 GGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKE 349
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/480 (31%), Positives = 246/480 (51%), Gaps = 85/480 (17%)
Query: 44 IYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-SIK 102
+Y+ S+++P A K+F ++ + D + T+I G A+ P +A ++ +M S+
Sbjct: 175 MYTSSMLLPDA----RKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVW 230
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
PN+ T A ++ +G VH IV+ G + + N+L+ CG +
Sbjct: 231 PNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCV------ 284
Query: 163 FDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222
+ A+ +FD MP++D+ SW M++ YAK G++E A
Sbjct: 285 -------------------------AAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAA 319
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+LF E+P R+VVSW+ M++ Y M +A+ +F +M + G P D T++S+L+ACA L
Sbjct: 320 KLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLC 379
Query: 283 DLEVGKKVHCTLL-----DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
L+VG ++ T + ++T ++ NA IDM+AKCG + A +F M D++V +
Sbjct: 380 SLDVGTWLYDTYIVSHKVELTPNLS-----NAFIDMFAKCGDVGAASRLFSNMEDKNVVS 434
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+T+I HG EE++ +F+E + + P E T++GVL ACSH G V EG+ +FK M+
Sbjct: 435 WNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMK 494
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
Y IEP HY +HG+VE+G
Sbjct: 495 IVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIG 554
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ A +L + +SG YVL+S IYAS+ +W +V+ +R +M D +KK PGCS IE D K
Sbjct: 555 KCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGK 614
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 175/397 (44%), Gaps = 68/397 (17%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
N H + + C + R L Q+QAL+T++G S+ L+ ++ P + +A
Sbjct: 27 NLVVTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLAFCALSDPPRLAHAAA 86
Query: 61 MFVKITE-PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
+ + TE P+ +M T++RG ++ P A+ L+ ++ + + + T F +KA
Sbjct: 87 VLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAAT-- 144
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
+ +H K GF V+A ++L
Sbjct: 145 SSSPTEAIHCVAFKRGF------------------------------IGQSVLAGNALVH 174
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
Y L AR LFDEM RD+VSW +I GYA+ G ++A +F + + V W
Sbjct: 175 MYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESV-W--- 230
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
P++VT+++ +A +G L +G+ VH +++ +
Sbjct: 231 --------------------------PNEVTLVAAASAAGQMGLLGLGRTVHQCIVE-SG 263
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
G V NAL+DM+ KCG + A EVF GM +DV +W++++ A G E + +F+
Sbjct: 264 GRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFK 323
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
E+ V +++ ++ A SHA +E + F M
Sbjct: 324 EIPNRNV----VSWSCMVAAYSHANMPDEAIRIFNDM 356
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 168/494 (34%), Positives = 265/494 (53%), Gaps = 76/494 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQ---------NPLDA---VFLYTQMEKCS 100
G I A ++F ++ EPD + T+I G + + +DA V +T M
Sbjct: 81 GRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGY 140
Query: 101 IKPNKFTFSFVLKACTRLLYRNM--------GFCVHGKIVKYGFEFNRFVR------NSL 146
I+ NK S K + +N+ G+ +G+I + F + N++
Sbjct: 141 IRSNKI--SDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTV 198
Query: 147 IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWN 206
+ A CG + A LFD + DV++W+++ AG L A LF+ MP RDL SWN
Sbjct: 199 MSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGL-----LDEALDLFERMPERDLPSWN 253
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV-GER 265
MITG + G++ +A +LFNE+PK++V+SW MI+G V G +++AL++F M S G +
Sbjct: 254 TMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAK 313
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
P+ T +S+L AC++L L G++VH ++ T +ALI+MY+KCG + A +
Sbjct: 314 PNQGTFVSVLGACSNLAGLGEGQQVH-QIISKTVYQDSTFVVSALINMYSKCGELGTARK 372
Query: 326 VFL-GM-RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+F GM RD+ +W+ +I A HG+ +E+I F+EM++ +P ++T+VG+L ACSHA
Sbjct: 373 MFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHA 432
Query: 384 GKVEEGKKYFK--------LMRDEY------------------------NIEPNIRHYG- 410
G VEEG KYF L+R+++ +P+ R +G
Sbjct: 433 GLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGA 492
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
VH +V++G+ A K+LL + + +G Y+LLSNIYAS G+W +VR M D +
Sbjct: 493 LLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGL 552
Query: 465 KKQPGCSLIEADDK 478
KKQPGCS IE ++
Sbjct: 553 KKQPGCSWIEVGNR 566
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 137/303 (45%), Gaps = 57/303 (18%)
Query: 140 RFVRNSLIYFHANCGDLNTASVL-----FDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
+ +R Y + + D TA + F D + W + ++ G + AR LF
Sbjct: 33 KLLRIPGFYLYHSINDYRTAKISIPRKDFTVDGNVARCNW--MITNLSKDGRIMEARRLF 90
Query: 195 DEMPVRDLVSWNVMITGYAKQGEMEK--------------------------------AN 222
DEM D+++W +I+GY K G +E+ A
Sbjct: 91 DEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAE 150
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+LFNE+P ++VVSWN MI GY G A+ +FE+M ER + V+ ++++ A G
Sbjct: 151 KLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM---PER-NVVSWNTVMSMLAQCG 206
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+E +++ + + V+ A+I G ++ A+++F M +RD+ +W+T+I
Sbjct: 207 RIEEARRLFDRMPE-----RDVISWTAMI-----AGLLDEALDLFERMPERDLPSWNTMI 256
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
GL +G + +F EM + V I++ ++ C G+ EE K F M
Sbjct: 257 TGLIQNGDLRRARKLFNEMPKKNV----ISWTTMITGCVQEGESEEALKIFSRMLSTNGA 312
Query: 403 EPN 405
+PN
Sbjct: 313 KPN 315
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/461 (31%), Positives = 236/461 (51%), Gaps = 71/461 (15%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I+ A ++F K+ E + T++ G Q +++ L+ QM ++ P++ VL A
Sbjct: 318 IDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSA 377
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C L ++G VH IV YG + F+ N+L+ +A CG L+
Sbjct: 378 CVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDE---------------- 421
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
A F+++P + SWN M+ G+ + G ++KA + FN++P++D+V
Sbjct: 422 ---------------ALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIV 466
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
SWN M++ YV + ++ E+F +M+S +PD T++SLL++CA +G L G V+ +
Sbjct: 467 SWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYI 526
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
G+ +L G ALIDMY KCG +E A E+F + +++V W+ ++ A G A E+
Sbjct: 527 EKNEIGIDAML-GTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEA 585
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--- 411
I ++ EM+ V+P +TF+ +L ACSH G V+EG KYF +R YNI P I HYG
Sbjct: 586 IDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVD 645
Query: 412 ------------------------------------HGDVELGRLANKRLLNMRKDESGD 435
H +VEL A K+L+ + +G
Sbjct: 646 LLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGA 705
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+VLLSNIYA G W+ V KVR + ++ + KQPG ++IE +
Sbjct: 706 HVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQN 746
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 186/414 (44%), Gaps = 100/414 (24%)
Query: 11 LWKKCTNLRTLKQIQA-LVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
L K C+N+R I A L+T N + + L + SV ++ AH++ EP+
Sbjct: 41 LLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSV---NNLDCAHQILSYSHEPE 97
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+ ++NT++ + P + + Y M + + TF F++ AC + +G VHG
Sbjct: 98 SIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHG 157
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+I L G+ R L+
Sbjct: 158 RI---------------------------------------------LKCGFGRNKSLN- 171
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
N ++ Y+K G++++ +LF ++ RDV+SWN MIS YVL GM
Sbjct: 172 ----------------NNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMY 215
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
++AL++F+EM G PD++TM+SL++ CA L DLE+GK++H ++D + L N
Sbjct: 216 REALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSL-LNC 274
Query: 310 LIDMYAKCGS---------------------------------IERAIEVFLGMRDRDVS 336
L+DMY+KCG I++A ++F M +R +
Sbjct: 275 LVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLV 334
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+W+T++ G G+ ES+ +F++M+ V P E+ V VL AC H + G+
Sbjct: 335 SWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGR 388
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 172/368 (46%), Gaps = 61/368 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + ++F K+T D +NT+I +A+ L+ +M + P++ T ++
Sbjct: 182 GKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLV 241
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C +L MG +H IV + N L+ ++ CG ++ A L
Sbjct: 242 STCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLL--------- 292
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
S DE V D+V W +++GY K +++KA +LF+++ +R
Sbjct: 293 -------------------SRCDESEV-DVVLWTTLVSGYVKSNKIDKARQLFDKMNERS 332
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+VSW M+SGYV G ++LE+F++MR PD+V ++++L+AC L D ++G+ VH
Sbjct: 333 LVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHA 392
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM---------------------- 330
++ V L GNAL+D+YAKCG ++ A+ F +
Sbjct: 393 FIVTYGMLVDGFL-GNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVD 451
Query: 331 --RD-------RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
RD +D+ +W+T++ H ES +F +MQ V+P + T + +L +C+
Sbjct: 452 KARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCA 511
Query: 382 HAGKVEEG 389
G + G
Sbjct: 512 KVGALNHG 519
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 126/245 (51%), Gaps = 3/245 (1%)
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
++ A+++ + + + + WN ++ + G ++ LE + M + G D T L+ A
Sbjct: 83 LDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHA 142
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
C D+++G +VH +L G K L+ N L+ +Y+KCG ++ ++F M RDV +
Sbjct: 143 CCKNFDVKLGSEVHGRILKCGFGRNKSLNNN-LMGLYSKCGKLKEVCQLFEKMTHRDVIS 201
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLM 396
W+T+I G E++ +F EM V P EIT V ++ C+ +E GK+ + ++
Sbjct: 202 WNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIV 261
Query: 397 RDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESG-DYVLLSNIYASRGEWNRVEKV 455
++ I ++ + V + G++ L R DES D VL + + + + N+++K
Sbjct: 262 DNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKA 321
Query: 456 RKLMD 460
R+L D
Sbjct: 322 RQLFD 326
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 136/315 (43%), Gaps = 24/315 (7%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L+ KC L +AL T S+A + G G ++ A F KI E D
Sbjct: 412 LYAKCGKLD-----EALRTFEQLPCKSAASWNSMLDG-FCRSGGVDKARDFFNKIPEKDI 465
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+NT++ + ++ ++ +M+ ++KP+K T +L +C ++ N G V+
Sbjct: 466 VSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVY 525
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
I K + + +LI + CG + A +F + +V W+++ A YA G+ A
Sbjct: 526 IEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEA 585
Query: 191 RSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNE-------VPKRDVVSWNAM 239
L+ EM R D V++ ++ + G +++ + FN+ +P + + M
Sbjct: 586 IDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPT--IHHYGCM 643
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL--LDM 297
+ G ++ ++ E M PD SL+ AC ++E+ ++ L +D
Sbjct: 644 VDLLGRVGHLEETVKFIERMPI---EPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDP 700
Query: 298 TSGVAKVLHGNALID 312
T+ A VL N D
Sbjct: 701 TNNGAHVLLSNIYAD 715
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/406 (35%), Positives = 231/406 (56%), Gaps = 40/406 (9%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C ++ LKQI A + G + S L +++ +V G + YA ++F ++ P+TF
Sbjct: 3 EACNSMSRLKQIHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFF 62
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL---LYRNMGFCV-- 127
YNT+IRG A+S P ++ L QM + + P++FTF+F++KA +R+ + RN+ V
Sbjct: 63 YNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVEC 122
Query: 128 ---HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
HG ++K GF + FVRN+LI+ YA R
Sbjct: 123 DEIHGAVLKLGFSSHLFVRNALIHL-------------------------------YAAR 151
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G +A +FDE D+VSW+ ++ + + GE+E+A +F+++P+RDVVSW M+S Y
Sbjct: 152 GNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYS 211
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
+++ALE++ M G RPD+VT++S+++AC +LGDL++G VH + +D V
Sbjct: 212 QAKYSREALELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVH-SYIDENGFRWMV 270
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
NALIDMYAKCG ++RA +VF M + + TW+++I A + E++ +F M
Sbjct: 271 SLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNY 330
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
V P +TF+ VL A +H G V+EG + F+ M+ ++ IE I HYG
Sbjct: 331 GVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRDHGIEARIEHYG 376
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/378 (36%), Positives = 211/378 (55%), Gaps = 42/378 (11%)
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
F +++Y + G L+ A +FD + ++++ + AGYA+ + M R LF+EMP
Sbjct: 251 FTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFP 310
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
++ SWN+MI+GY + G++ +A LF+ +P+RD VSW A+I+GY G+ ++A+ M EM+
Sbjct: 311 NIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMK 370
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGS 319
GE + T L+ACAD+ LE+GK+VH ++ +G K L GNAL+ MY KCG
Sbjct: 371 RDGESLNRSTFCCALSACADIAALELGKQVHGQVV--RTGYEKGCLVGNALVGMYCKCGC 428
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I+ A +VF G++ +D+ +W+T++ G A HGF +++ +F M V+P EIT VGVL A
Sbjct: 429 IDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSA 488
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSH G + G +YF M +Y I PN +HY
Sbjct: 489 CSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAA 548
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+HG++ELG A + + M SG YVLLSN+YA+ G W V K+R M
Sbjct: 549 TWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMR 608
Query: 461 DSDIKKQPGCSLIEADDK 478
++K PG S +E +K
Sbjct: 609 QIGVQKTPGYSWVEVQNK 626
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 166/340 (48%), Gaps = 29/340 (8%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A +F K+ D F +N ++ G A+++ DA L+ M P K S+
Sbjct: 83 ARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSM------PEKDVVSW-----NA 131
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVR------NSLIYFHANCGDLNTASVLFDGDAKMDV 171
+L G+ G + + F+R N L+ + G L A LF+ + ++
Sbjct: 132 ML---SGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWEL 188
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
++ + L GY +R L AR LFD++PVRDL+SWN MI+GYA+ G++ +A LF E P R
Sbjct: 189 ISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVR 248
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
DV +W AM+ YV GM +A +F+EM E +V ++ A +++G+++
Sbjct: 249 DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNV----MIAGYAQYKRMDMGRELF 304
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ + N +I Y + G + +A +F M RD +W+ +I G A +G
Sbjct: 305 EEM-----PFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLY 359
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
EE++ M EM+R TF L AC+ +E GK+
Sbjct: 360 EEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQ 399
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 144/275 (52%), Gaps = 15/275 (5%)
Query: 147 IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWN 206
I H G + A +FD + V+++++ +GY R + S+AR LFD+MP +DL SWN
Sbjct: 40 ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWN 99
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
+M+TGYA+ + A LF+ +P++DVVSWNAM+SGYV G +A ++F+ M
Sbjct: 100 LMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM----PHK 155
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
+ ++ LL A G LE +++ + D +++ N L+ Y K + A ++
Sbjct: 156 NSISWNGLLAAYVRSGRLEEARRLFESKSDW-----ELISCNCLMGGYVKRNMLGDARQL 210
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F + RD+ +W+T+I G A G ++ +F E V T+ ++ A G +
Sbjct: 211 FDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FTWTAMVYAYVQDGML 266
Query: 387 EEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGR 419
+E ++ F M + + N I Y + +++GR
Sbjct: 267 DEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGR 301
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 151/313 (48%), Gaps = 22/313 (7%)
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
N N++I + + A LFD D+ +W+ + GYAR L AR LFD MP
Sbjct: 63 NSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMP 122
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
+D+VSWN M++GY + G +++A ++F+ +P ++ +SWN +++ YV G ++A +FE
Sbjct: 123 EKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFES 182
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
+S E ++ LGD L D V ++ N +I YA+ G
Sbjct: 183 -KSDWELISCNCLMGGYVKRNMLGDAR-------QLFDQIP-VRDLISWNTMISGYAQDG 233
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
+ +A +F RDV TW+ ++ G +E+ +F EM + + E+++ ++
Sbjct: 234 DLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKR----EMSYNVMIA 289
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--VHGDVELGRLANKRLL--NMRKDESG 434
+ +++ G++ F+ M PNI + + G + G LA R L M + +S
Sbjct: 290 GYAQYKRMDMGRELFEEMP-----FPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSV 344
Query: 435 DYVLLSNIYASRG 447
+ + YA G
Sbjct: 345 SWAAIIAGYAQNG 357
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 123/247 (49%), Gaps = 12/247 (4%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F + + D+ + II G AQ+ +A+ + +M++ N+ TF L
Sbjct: 326 GDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCAL 385
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + +G VHG++V+ G+E V N+L+ + CG ++ A +F G D+V
Sbjct: 386 SACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIV 445
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+++ AGYAR G A ++F+ M D ++ +++ + G ++ E F+ +
Sbjct: 446 SWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSM 505
Query: 229 PKRDVVSWNA-----MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
K ++ N+ MI G ++A + +R++ PD T +LL A G+
Sbjct: 506 NKDYGITPNSKHYACMIDLLGRAGCLEEAQNL---IRNMPFEPDAATWGALLGASRIHGN 562
Query: 284 LEVGKKV 290
+E+G++
Sbjct: 563 MELGEQA 569
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 157/497 (31%), Positives = 243/497 (48%), Gaps = 80/497 (16%)
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F ++ E D +NT+I QS N DA+ + M + +PN T + + +C RLL
Sbjct: 163 LFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLD 222
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
N G +H +++ GF + F+ ++L+ + CG L A +F+ K VVAW+S+ +G
Sbjct: 223 LNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISG 282
Query: 181 YARRGELSMARSLFDEM------PVRDLVSWNVMITG----------------------- 211
Y +G++ LF M P +S +M+
Sbjct: 283 YGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPD 342
Query: 212 ----------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
Y K G++E A ++F +PK VVSWN MISGYV G +AL +F EMR
Sbjct: 343 VFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRK 402
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
D +T S+LTAC+ L LE GK++H +++ +V+ G AL+DMYAKCG+++
Sbjct: 403 SYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMG-ALLDMYAKCGAVD 461
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A VF + RD+ +W+++I HG A ++ +F EM + V+P + F+ +L AC
Sbjct: 462 EAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACG 521
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------- 410
HAG V+EG YF M + Y I P + HY
Sbjct: 522 HAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVEL 581
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+H +++LG + L++ D+S Y+LLSN+YAS +W+ V VR M +
Sbjct: 582 LSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKE 641
Query: 462 SDIKKQPGCSLIEADDK 478
+KK PGCS IE + K
Sbjct: 642 LGLKKNPGCSWIEINQK 658
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 194/430 (45%), Gaps = 47/430 (10%)
Query: 11 LWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
L + C N ++LKQ I V G +D + LI + ++A +F +
Sbjct: 9 LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLI--NQYLSCHLYDHAKCVFDNMEN 66
Query: 68 P-DTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
P + ++N ++ G ++ ++A+ L+ ++ +KP+ +T+ V KAC L +G
Sbjct: 67 PCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGK 126
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H ++K G + V +SL+ + C A LF+ + DV W+++ + Y + G
Sbjct: 127 MIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSG 186
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITG---------------------------------- 211
A F M +V IT
Sbjct: 187 NFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISS 246
Query: 212 -----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
Y K G +E A E+F ++PK+ VV+WN+MISGY L G +++F+ M + G +P
Sbjct: 247 ALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKP 306
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
T+ SL+ C+ L GK VH + V ++L+D+Y KCG +E A ++
Sbjct: 307 TLTTLSSLIMVCSRSARLLEGKFVHGYTIR-NRIQPDVFVNSSLMDLYFKCGKVELAEKI 365
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F + V +W+ +I G G E++ +F EM++ V ITF VL ACS +
Sbjct: 366 FKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAAL 425
Query: 387 EEGKKYFKLM 396
E+GK+ L+
Sbjct: 426 EKGKEIHNLI 435
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 43/338 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F ++ + +N++I G + + + L+ +M +KP T S ++
Sbjct: 256 GHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLI 315
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C+R G VHG ++ + + FV +SL+ + CG + A +F K VV
Sbjct: 316 MVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVV 375
Query: 173 AWSSLTAGYARRGELSMARSLFDEM----PVRDLVSWNVMITG----------------- 211
+W+ + +GY G+L A LF EM D +++ ++T
Sbjct: 376 SWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLI 435
Query: 212 ------------------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
YAK G +++A +F +PKRD+VSW +MI+ Y G AL
Sbjct: 436 IEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGAL 495
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
E+F EM +PD V L++L+AC G ++ G ++++ + +V H + LID+
Sbjct: 496 ELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDL 555
Query: 314 YAKCGSIERAIEVFLG---MRDRDVSTWSTLIGGLAFH 348
+ G + A E+ +RD DV STL H
Sbjct: 556 LGRAGRLHEAYEILQQNPEIRD-DVELLSTLFSACRLH 592
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 124/256 (48%), Gaps = 17/256 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A K+F I + +N +I G +A+ L+++M K ++ + TF+ VL
Sbjct: 357 GKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVL 416
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC++L G +H I++ + N V +L+ +A CG ++ A +F K D+V
Sbjct: 417 TACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLV 476
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNE- 227
+W+S+ Y G A LF EM D V++ +++ G +++ FN+
Sbjct: 477 SWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQM 536
Query: 228 ------VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS-LLTACAD 280
+P+ V ++ +I L G + E +E ++ E DDV +LS L +AC
Sbjct: 537 INVYGIIPR--VEHYSCLID---LLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRL 591
Query: 281 LGDLEVGKKVHCTLLD 296
++++G ++ TL+D
Sbjct: 592 HRNIDLGAEIARTLID 607
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 9/226 (3%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS-WNAMISGYVLCGMNKQALEMFEEM 259
D+ +I Y + A +F+ + +S WN +++GY M +ALE+FE++
Sbjct: 37 DIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKL 96
Query: 260 RSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
+PD T S+ AC L +GK +H T L T + ++ G++L+ MY KC
Sbjct: 97 LHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIH-TCLIKTGLMMDIVVGSSLVGMYGKCN 155
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
+ E+AI +F M ++DV+ W+T+I G ++++ F M+R P +T +
Sbjct: 156 AFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAIS 215
Query: 379 ACSHAGKVEEGKKYFK------LMRDEYNIEPNIRHYGVHGDVELG 418
+C+ + G + + + D + + YG G +E+
Sbjct: 216 SCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMA 261
>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
Length = 530
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/514 (32%), Positives = 256/514 (49%), Gaps = 86/514 (16%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
+C L LKQ+ A + G + + L+ S+ + + YA ++F P+ F+Y
Sbjct: 19 RCATLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRL-SCLPYARRLFDATPSPNVFLY 77
Query: 74 NTIIRGSAQ-----SQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRL---LYRNMG 124
+ ++ A ++ D++ L+ +M + PN+F + VL+A + L R+
Sbjct: 78 SAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRS-- 135
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H K GF + F+R SL+ GY+R
Sbjct: 136 --IHCHACKDGFYGHDFIRTSLL-------------------------------DGYSRY 162
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G + AR LFD + R++VSW +++GYA+ G++ A LF +P+RDV +WNA+I+G
Sbjct: 163 GMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCT 222
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G+ +A+ +F M G RP+ T+ LL+AC LG L++GK +H G
Sbjct: 223 QNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCVGFGSS 282
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
+ N LIDMY KCG++ A +F DR ++TW++LI LA HG +E +IA+F M+
Sbjct: 283 V-VNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVFNSMRNE 341
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------- 410
V+P E+TFVG+L AC+H G V+EG +YF+LM DE+ IEP I HYG
Sbjct: 342 GVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCRAGRFQD 401
Query: 411 -------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
+H +EL A + LL++ + V+L+N+Y+
Sbjct: 402 AMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLNPSNANYVVMLANLYSE 461
Query: 446 RGEWNRVEKVRKLM-DDSDIKKQPGCSLIEADDK 478
G W V KVRKLM +D KK PGCS IE D K
Sbjct: 462 GGFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRK 495
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/513 (32%), Positives = 254/513 (49%), Gaps = 94/513 (18%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
+Q A + ++G ++ +++ Y+ S G ++ A +F +I P + +YN+IIR
Sbjct: 97 QQAHAQIVLHGLQPNAFLAAKMVAMYASS----GDLDSAVVVFDRIDNPSSLLYNSIIRA 152
Query: 80 ---SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
+ Y +M + + FT FVLK+C L MG CVHG+ ++ G
Sbjct: 153 YTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGL 212
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E + +V SLI + CG + GDA R LFD+
Sbjct: 213 EGDFYVGASLIDMYVKCGVI--------GDA-----------------------RKLFDK 241
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
M VRD+ SWN +I GY K+GE+ A +LF + R++VSW AMISGY G +QAL +F
Sbjct: 242 MIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLF 301
Query: 257 EEMRSVGE--RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN-----A 309
+EM G +P+ VT++S+L ACA LE G+++H D +G+ LH N A
Sbjct: 302 DEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIH----DFANGIG--LHLNSSVQTA 355
Query: 310 LIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
L MYAKC S+ A F + +++ W+T+I A HG E++++F M R V+
Sbjct: 356 LAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQ 415
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------------- 411
P +TF+G+L CSH+G ++ G +F M +++EP + HY
Sbjct: 416 PDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKE 475
Query: 412 -----------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
H ++E+ LA +RL + D SG+YVLLSN+YA G
Sbjct: 476 LISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGM 535
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFL 481
W V+K+R L+ +KK PGCS IE + K+ L
Sbjct: 536 WEEVKKLRALLKYQGMKKSPGCSWIEINGKSHL 568
>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/461 (34%), Positives = 232/461 (50%), Gaps = 75/461 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A ++F I + D + T+I G Q +A+ +Y M + PN+ ++
Sbjct: 265 GLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLV 324
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC R G+ +HG +VK GF+ F++ ++IYF+A CG ++ A + F
Sbjct: 325 SACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQF--------- 375
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRD-LVSWNVMITGYAKQGEMEKANELFNEVPKR 231
E+ V+D L SWN + G+ K G M+ A + F+++ R
Sbjct: 376 -----------------------EVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVR 412
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
DV SW+ MISGY K ALE+F +M + G +P++VTM+S+ +A A LG L+ GK H
Sbjct: 413 DVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAH 472
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHG 349
+ + L ALIDMYAKCGSI A++ F +RD VS W+ +I GLA HG
Sbjct: 473 EYMRSESIPFNDNLRA-ALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLASHG 531
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
A + +F +MQR ++P ITF+GVL AC HAG VE GK+ FK M+ YN+EP+I+HY
Sbjct: 532 HASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKRIFKTMKSAYNVEPDIKHY 591
Query: 410 G---------------------------------------VHGDVELGRLANKRLLNMRK 430
G HG+V +G A + L +
Sbjct: 592 GCMIDILGRAGLLEEAEEMIRSMPMEADIVIWGTLLAACRTHGNVNIGERAAENLARLAP 651
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
G VLLSNIYA+ G+W V VR +M + ++PG S
Sbjct: 652 SHGGGKVLLSNIYANAGKWEEVSFVRSVMQGQTMDREPGYS 692
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 61/308 (19%)
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
LK+C+ L + + G +H I K G FN F++NSLI +A CGD+ A +
Sbjct: 60 LKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQL---------- 109
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
LFD D VS N+M++GY + G+++ A +LF+ +P +
Sbjct: 110 ---------------------LFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNK 148
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
VS+ MI G+V G ++ALE+F++MRS G P+D+T++++++AC+ LG++ + VH
Sbjct: 149 GCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVH 208
Query: 292 CTLLDM------------------TSGVAK------------VLHGNALIDMYAKCGSIE 321
++ M SGV + ++ N +++ YAK G ++
Sbjct: 209 GLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVD 268
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A E+F G+ D+DV +W T+I G G E++ ++R M + P E+ V ++ AC
Sbjct: 269 EARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACG 328
Query: 382 HAGKVEEG 389
+ +G
Sbjct: 329 RGTAIVDG 336
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 188/400 (47%), Gaps = 29/400 (7%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
++ KC +++ A + +GF + S ++ SG V G I+ A K+F +
Sbjct: 97 MYAKCGDIK-----NAQLLFDGFATLDSVSCNIMVSG-YVRNGQIDNARKLFDVMPNKGC 150
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
Y T+I G Q+ +A+ ++ M C + PN T V+ AC+ L VHG
Sbjct: 151 VSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGL 210
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+VK V +L++ + C + A LFD + ++V W+ + GYA+ G + A
Sbjct: 211 VVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEA 270
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV-LCGMN 249
R LFD + +D++SW MI GY ++G + +A E++ + + MI V CG
Sbjct: 271 RELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRG 330
Query: 250 KQALEMFEEMRSVGERPDD------VTMLSLLTACA--DLGDL--EVGKKVHCTLLDMTS 299
++ ++ +V +R D T++ AC DL L EVG K H
Sbjct: 331 TAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDH-------- 382
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ NAL + K G ++ A++ F M RDV +WST+I G A + ++ +F
Sbjct: 383 ----LESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFH 438
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+M ++P E+T V V A + G ++EGK + MR E
Sbjct: 439 KMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSE 478
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 33/169 (19%)
Query: 250 KQALEMFEEMRSVGERPD-DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
+ + +F R+ D ++ ++S L +C+ L + G+++H + + + N
Sbjct: 34 QHFIHIFTNARNHQNHHDSELALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQ-N 92
Query: 309 ALIDMYAKCGSIERAIEVFLG-------------------------------MRDRDVST 337
+LI+MYAKCG I+ A +F G M ++ +
Sbjct: 93 SLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVS 152
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
++T+I G +GF E++ +F++M+ V P ++T V V+ ACSH G+V
Sbjct: 153 YTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEV 201
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/444 (34%), Positives = 232/444 (52%), Gaps = 75/444 (16%)
Query: 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
M + I P+ T+ F+ KA +RLL + +G +HG ++K GFE +RFV NSLI+ + +CGD
Sbjct: 1 MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGD 60
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQ 215
+ A +FDG ++V+W+S+ GYA+ G L +AR LFD MP RD+ SW+ +I GYAK
Sbjct: 61 IVYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKS 120
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
G A+ +FE+MR+ G + ++VTM+S+L
Sbjct: 121 GNY-------------------------------GDAMAVFEKMRTSGPKANEVTMVSVL 149
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG--MRDR 333
ACA LG L+ G+ +H L+D + VL +LIDMYAKCG++E A VF G +R
Sbjct: 150 CACAHLGALDKGRMMHQYLVDNGFELNLVLR-TSLIDMYAKCGAVEEAFAVFRGVSLRKS 208
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
DV W+ +IGGLA HG +ES+ ++ EMQ ++P EITF+ +L AC+H G V++ F
Sbjct: 209 DVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLSACAHGGLVKQASYVF 268
Query: 394 KLMRDEYNIEPNIRHYGV---------------------------------------HGD 414
+ + + + P HY HG
Sbjct: 269 EGL-GKNGMTPKTEHYACMVDVMARAGQVAEAYQFLCQMPLEPTASMLGALLSGCMNHGK 327
Query: 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
++L L K+L+ + + G YV LSN+YA W+ +R+ M+ +KK PG S +E
Sbjct: 328 LDLAELIGKKLIELDPEHDGRYVGLSNVYAIGRRWDEARIMREAMERRGVKKTPGYSFLE 387
Query: 475 ADDKAFLQYLFNLKPKPNSGNLDT 498
A +++ + K P+S + T
Sbjct: 388 MSG-AHHRFIAHDKSHPSSEQIYT 410
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 124/255 (48%), Gaps = 13/255 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F + E D ++ +I G A+S N DA+ ++ +M K N+ T VL
Sbjct: 90 GYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTSGPKANEVTMVSVL 149
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA--KMD 170
AC L + G +H +V GFE N +R SLI +A CG + A +F G + K D
Sbjct: 150 CACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSD 209
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFN 226
V+ W+++ G A G + + L+ EM + D +++ +++ A G +++A+ +F
Sbjct: 210 VLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLSACAHGGLVKQASYVFE 269
Query: 227 EVPKRDVVS----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ K + + M+ G Q E ++ + + P + +LL+ C + G
Sbjct: 270 GLGKNGMTPKTEHYACMVDVMARAG---QVAEAYQFLCQMPLEPTASMLGALLSGCMNHG 326
Query: 283 DLEVGKKVHCTLLDM 297
L++ + + L+++
Sbjct: 327 KLDLAELIGKKLIEL 341
>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
Length = 748
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 171/529 (32%), Positives = 260/529 (49%), Gaps = 92/529 (17%)
Query: 5 RHRSSRL------WKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYA 58
RHRS +C L LKQ+ A + G + + L+ S+ + + YA
Sbjct: 222 RHRSPPTADFVAALHRCATLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRL-SCLPYA 280
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQ-----SQNPLDAVFLYTQM-EKCSIKPNKFTFSFVL 112
++F P+ F+Y+ ++ A ++ D++ L+ +M + PN+F + VL
Sbjct: 281 RRLFDATPSPNVFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVL 340
Query: 113 KACTRL---LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
+A + L R+ +H K GF + F+R SL+
Sbjct: 341 RAACAIGVQLVRS----IHCHACKDGFYGHDFIRTSLL---------------------- 374
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
GY+R G + AR LFD + R++VSW +++GYA+ G++ A LF +P
Sbjct: 375 ---------DGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMP 425
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
+RDV +WNA+I+G G+ +A+ +F M G RP+ T+ LL+AC LG L++GK
Sbjct: 426 QRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKV 485
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
+H G + N LIDMY KCG++ A +F DR ++TW++LI LA HG
Sbjct: 486 IHGYAWRSCVGFGSSV-VNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHG 544
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
+E +IA+F M+ V+P E+TFVG+L AC+H G V+EG +YF+LM DE+ IEP I HY
Sbjct: 545 CSESAIAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHY 604
Query: 410 G---------------------------------------VHGDVELGRLANKRLLNMRK 430
G +H +EL A + LL++
Sbjct: 605 GCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLNP 664
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLM-DDSDIKKQPGCSLIEADDK 478
+ V+L+N+Y+ G W V KVRKLM +D KK PGCS IE D K
Sbjct: 665 SNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRK 713
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 155/501 (30%), Positives = 248/501 (49%), Gaps = 74/501 (14%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C NL +KQI V G + L +LI + + + Y ++ + + F++
Sbjct: 60 CINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWT 119
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
+IRG +A+ +Y M K I P FTFS +LKAC + N+G H + +
Sbjct: 120 AVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRL 179
Query: 135 -GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF F +V N++I + CG + AR +
Sbjct: 180 RGFCF-VYVGNTMIDMYVKCG-------------------------------SIVCARKV 207
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FDEMP RD++SW +I YA+ G ME A +LF +P +D+V+W AM++G+ ++AL
Sbjct: 208 FDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEAL 267
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG-KKVHCTLLDMTSGVAKVLHGNALID 312
E F+ M G R D+VT+ ++ACA LG + + V S V+ G+ALID
Sbjct: 268 EYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALID 327
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEI 371
MY+KCG++E A+ VF+ M +++V ++S++I GLA HG A+E++ +F M + ++P +
Sbjct: 328 MYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTV 387
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TFVG L ACSH+G V++G++ F M + +EP HY
Sbjct: 388 TFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKT 447
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+H + ++ +A + L + D G+Y+LLSN+Y+S G+W V
Sbjct: 448 MSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGV 507
Query: 453 EKVRKLMDDSDIKKQPGCSLI 473
VRKL+ + +KK P S +
Sbjct: 508 LSVRKLIKEKGLKKTPAVSWV 528
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/508 (30%), Positives = 257/508 (50%), Gaps = 104/508 (20%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C +L+ L++I A V ++G + +L+ ++ + G++ YA +F ++ P T
Sbjct: 10 LLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQT 69
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMGFCVHG 129
+N+IIRG AQS +P+DA+ Y QM S P+ FTFSFVLKAC R+ VHG
Sbjct: 70 EAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHG 129
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+++ G++ DV+ ++L Y+ G + +
Sbjct: 130 SVIRCGYD-------------------------------ADVIVCTNLVKCYSAMGSVCI 158
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
AR ++F+++P RD+V+WNAMIS + G++
Sbjct: 159 AR-------------------------------QVFDKMPARDLVAWNAMISCFSQQGLH 187
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GN 308
++AL+ + +MRS D T++ L+++CA LG L +G ++H +G+ + L+ GN
Sbjct: 188 QEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMH--RFARENGLDQSLYVGN 245
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
ALIDMYAKCGS+++AI +F M+ +D+ TW+++I G HG E+I F++M +++P
Sbjct: 246 ALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQP 305
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
+TF+G+L CSH G V+EG KYF LM ++ ++P ++HYG
Sbjct: 306 NPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEI 365
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+H +V +G +A RL + +GD +LL+ IYA +
Sbjct: 366 VSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKA 425
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDK 478
V ++RK++ K PG S IE ++
Sbjct: 426 GVARMRKMIKSQGKKTTPGWSWIEIGEQ 453
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 165/542 (30%), Positives = 268/542 (49%), Gaps = 87/542 (16%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMF--VKITEPDTFMY 73
++T + I V NGF + + L+ Y+ ++ A +F ++ + ++
Sbjct: 178 IQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKC----KCVSEAEFLFKGLEFDRKNHVLW 233
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
++ G AQ+ + AV + M ++ N++TF +L AC+ +L R G VHG IVK
Sbjct: 234 TAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVK 293
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF N +V+++L+ +A CGDL A + + DVV+W+SL G+ R G A L
Sbjct: 294 SGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRL 353
Query: 194 FDEMPVRD--------------------------------------LVSWNVMITGYAKQ 215
F M R+ LVS N ++ YAK
Sbjct: 354 FKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVS-NALVDMYAKT 412
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
G+M+ A +F ++ ++DV+SW ++++GY ++++L++F +MR G PD + S+L
Sbjct: 413 GDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASIL 472
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+ACA+L LE GK+VH + ++ ++ N+L+ MYAKCG ++ A +F+ M+ +DV
Sbjct: 473 SACAELTLLEFGKQVHLDFIKSGLRWSQSVY-NSLVAMYAKCGCLDDADAIFVSMQVKDV 531
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
TW+ +I G A +G S+ + M RP ITF+G+L ACSHAG V+EG+KYF+
Sbjct: 532 ITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQ 591
Query: 396 MRDEYNIEPNIRHYG---------------------------------------VHGDVE 416
M Y I+P HY VH ++E
Sbjct: 592 MNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLE 651
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
L A L + + YV+LSN+Y++ +WN V K+RKLM I K+PGCS +E +
Sbjct: 652 LAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEIN 711
Query: 477 DK 478
+
Sbjct: 712 SR 713
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 117/440 (26%), Positives = 196/440 (44%), Gaps = 82/440 (18%)
Query: 30 INGFNSDSSALRELIYSGSVVI-----PGAINYAHKMFVKITEPDTFMYNTIIR------ 78
+ ++ ++A E IY + ++ G +N A K+F K+ + D + +NT+I
Sbjct: 51 LRSIHTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVG 110
Query: 79 -------------------------GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
G + ++A L+ M K ++FT VL+
Sbjct: 111 RLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLR 170
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG---DAKMD 170
C+ L G +HG +VK GFE N FV L+ +A C ++ A LF G D K
Sbjct: 171 VCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNH 230
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVR------------------------------ 200
V+ W+++ GYA+ G+ A F M +
Sbjct: 231 VL-WTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHG 289
Query: 201 ---------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
++ + ++ YAK G+++ A + + DVVSWN+++ G+V G+ ++
Sbjct: 290 FIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEE 349
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
AL +F+ M + DD T S+L C +G + K VH L+ T L NAL+
Sbjct: 350 ALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSIN-PKSVH-GLIIKTGFENYKLVSNALV 406
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DMYAK G ++ A VF M ++DV +W++L+ G A + EES+ +F +M+ V P +
Sbjct: 407 DMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQF 466
Query: 372 TFVGVLVACSHAGKVEEGKK 391
+L AC+ +E GK+
Sbjct: 467 IVASILSACAELTLLEFGKQ 486
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 175/558 (31%), Positives = 274/558 (49%), Gaps = 89/558 (15%)
Query: 4 NRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYA 58
+R+ S + C+ L L KQI A V G D S + LI Y+ +
Sbjct: 137 DRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKC----NRVKAG 192
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
K+F ++ + + T+I G Q+ +A+ L+ +M + KP+ F + VL +C L
Sbjct: 193 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSL 252
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
G VH +K E N FV+N LI +A L A +FD A+ +V++++++
Sbjct: 253 EALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMI 312
Query: 179 AGYARRGELSMARSLFDEMPVR-------------------------------------- 200
GY+ + +LS A LF EM VR
Sbjct: 313 EGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVS 372
Query: 201 -DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
DL + + +I Y+K ++ A +F E+ ++D+V WNAM GY N++AL+++ +
Sbjct: 373 LDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTL 432
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
+ ++P++ T +L+TA ++L L G++ H L+ M + NAL+DMYAKCGS
Sbjct: 433 QFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFV-TNALVDMYAKCGS 491
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
IE A ++F RDV W+++I A HG AEE++ MFREM + ++P +TFV VL A
Sbjct: 492 IEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSA 551
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSHAG VE+G +F M + I+P HY
Sbjct: 552 CSHAGXVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAI 610
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+ G+VELG+ A + ++ +SG Y+LLSNI+AS+G W V+KVR MD
Sbjct: 611 VWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMD 670
Query: 461 DSDIKKQPGCSLIEADDK 478
S++ K+PG S IE ++K
Sbjct: 671 SSEVVKEPGRSWIEVNNK 688
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 202/431 (46%), Gaps = 63/431 (14%)
Query: 13 KKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVK 64
+ CT L ++ Q+ V +GF+ D +Y G+ +I G I A +F +
Sbjct: 45 RACTQLGVVEKGAQLHGFVVRSGFDQD-------VYVGTSLIDFYSKNGBIEVARLVFDQ 97
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+ E + TII G + ++ L+ QM + ++ P+++ S VL AC+ L + G
Sbjct: 98 LLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGG 157
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H +++ G E + V N LI F+ C + LFD ++++W+++ +GY +
Sbjct: 158 KQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQN 217
Query: 185 GELSMARSLFDEMPVRDLVSW--------------------------------------- 205
A LF EM + + W
Sbjct: 218 SFDWEAMKLFGEM---NRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNE 274
Query: 206 ---NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
N +I YAK + A ++F+ + +++V+S+NAMI GY +ALE+F EMR
Sbjct: 275 FVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVR 334
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIE 321
P +T +SLL A L LE+ K++H ++ GV+ + G+ALID+Y+KC ++
Sbjct: 335 LFPPSLLTFVSLLGVSASLFALELSKQIHGLIIK--XGVSLDLFAGSALIDVYSKCSYVK 392
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A VF M ++D+ W+ + G H EE++ ++ +Q + +P E TF ++ A S
Sbjct: 393 DARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAAS 452
Query: 382 HAGKVEEGKKY 392
+ + G+++
Sbjct: 453 NLASLRHGQQF 463
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 177/349 (50%), Gaps = 41/349 (11%)
Query: 88 DAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL 146
+A+ ++ +++ S + PN+F + V++ACT+L G +HG +V+ GF+ + +V SL
Sbjct: 19 EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 78
Query: 147 IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------PVR 200
I F++ GB+ A ++FD + V W+++ AGY + G ++ LF +M P R
Sbjct: 79 IDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDR 138
Query: 201 DLVS---------------------------------WNVMITGYAKQGEMEKANELFNE 227
+VS NV+I Y K ++ +LF++
Sbjct: 139 YVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQ 198
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+ ++++SW MISGY+ + +A+++F EM +G +PD S+LT+C L LE G
Sbjct: 199 MVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQG 258
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
++VH + + + N LIDMYAK + A +VF M +++V +++ +I G +
Sbjct: 259 RQVHAYTIKANLESNEFVK-NGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSS 317
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
E++ +F EM+ P+ +TFV +L + +E K+ L+
Sbjct: 318 QEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLI 366
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 18/223 (8%)
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
+ RS FD+ D+ +I Y+K G++E A +F+++ ++ V+W +I+GY CG
Sbjct: 63 VVRSGFDQ----DVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGR 118
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL----DMTSGVAKV 304
+ +LE+F +MR PD + S+L+AC+ L LE GK++H +L +M V
Sbjct: 119 SXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV-- 176
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
N LID Y KC ++ ++F M +++ +W+T+I G + F E++ +F EM RL
Sbjct: 177 ---NVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRL 233
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
+P VL +C +E+G++ Y I+ N+
Sbjct: 234 GWKPDGFACTSVLTSCGSLEALEQGRQV-----HAYTIKANLE 271
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 247 GMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-V 304
G +++AL +F ++ R GE P++ + S++ AC LG +E G ++H ++ SG + V
Sbjct: 15 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVV--RSGFDQDV 72
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
G +LID Y+K G IE A VF + ++ TW+T+I G G + S+ +F +M+
Sbjct: 73 YVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRET 132
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKK 391
V P VL ACS +E GK+
Sbjct: 133 NVVPDRYVVSSVLSACSMLEFLEGGKQ 159
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 149/409 (36%), Positives = 228/409 (55%), Gaps = 39/409 (9%)
Query: 22 KQIQAL-VTINGFN--SDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIR 78
KQ+ AL V N F+ S SS L L + + Y +F KI EP +YN +I+
Sbjct: 25 KQLHALSVKTNTFSHPSISSCLLSLYAEPKI---NNLEYVLSIFNKIQEPALVLYNILIK 81
Query: 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEF 138
Q+Q DA+ L++Q+ P+ FT V+K C RL G +HG ++K GF
Sbjct: 82 CYIQNQLSHDAITLFSQLLH-EFNPDGFTLPCVIKGCARLHATKEGKQIHGLVLKLGFGL 140
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM--------- 189
N+FV +SL+ ++ C D+++A +F D+V+W+SL GY + G++ +
Sbjct: 141 NKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGYVKCGQVELGMKLFEEMP 200
Query: 190 ----------------------ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
AR LFD+MP R+LVSWN MI GY K G+ A+ELF++
Sbjct: 201 ERDLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLVSWNAMINGYMKAGDFVLASELFDK 260
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P+++++SWN+M++GY L K+AL++F M P+ T++S +A + L L G
Sbjct: 261 MPEKNLISWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATLVSTFSAVSGLASLSTG 320
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
K +H ++ + VL +LI+MY+KCG+IE A+ VF + + + W+ +I GL
Sbjct: 321 KWMHSYMVKNGFQLDGVL-ATSLINMYSKCGNIESALSVFQLITKKKLGHWTAIIVGLGM 379
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
HG A+ ++ F EM R +RP ITF+GVL ACSHAG VE+G+KYF +M
Sbjct: 380 HGMADNALEFFHEMCRTGMRPHAITFIGVLNACSHAGLVEDGRKYFDMM 428
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 160/514 (31%), Positives = 243/514 (47%), Gaps = 74/514 (14%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
R+ L C+ R ++ A V G + + G ++ + + +
Sbjct: 291 RAVSLLTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTR 350
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
+P Y + I + + L A+ L + M + P T S L AC L + G
Sbjct: 351 DPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGL---SPGRA 407
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+HG K + +V +L+ YAR G+
Sbjct: 408 LHGYAFKLALAGDSYVATALLGM-------------------------------YARAGD 436
Query: 187 LSMARSLFDEM-PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+ AR+LFD+M P +VS M+T YA G ++ A LF+ +P +D V WNAMI GY
Sbjct: 437 ATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQ 496
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
G +AL +F M G PD+VT++ +L+A A LG +E GK +H + + V
Sbjct: 497 HGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVR 556
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
G ALIDMY KCGS+ A++VF G+ D+D+ W+ +I G A HG + +++ MF + +
Sbjct: 557 VGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQG 616
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
+ PT+ITF+G+L ACSH+G VEEG+++F+ M EY I+P I HYG
Sbjct: 617 LWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEA 676
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+H ++ LG+ L+ SG Y+LLSNIYA+
Sbjct: 677 FCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAV 736
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
G W V +VR +M S I+K+PGCS IE D + +
Sbjct: 737 GNWGEVARVRSMMKASGIQKEPGCSSIEIDREVY 770
>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
Length = 626
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 160/512 (31%), Positives = 245/512 (47%), Gaps = 111/512 (21%)
Query: 73 YNTIIRGSAQSQN----PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+NT+I A ++ P DA+ YT M + PN FTF+F+L+AC L + CVH
Sbjct: 69 HNTLIERLAGARGHRPVPADALAAYTAMLAAGVPPNGFTFTFLLRACALLGFPRPCRCVH 128
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCG---------------------------------- 154
G+IV++GF FV+N+L+ + CG
Sbjct: 129 GQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSG 188
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK 214
D A LF+ + +VV+W++L AG+AR G++ A+++FD MP R+ +SWN+MI+GYA
Sbjct: 189 DYTGAMELFEAMPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAISWNLMISGYAS 248
Query: 215 QGEMEKA--------------------------------NELFNEVPKRDVVSWNAMISG 242
G++E A ELF+ +P +++VSWNAMI+G
Sbjct: 249 SGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITG 308
Query: 243 YVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
Y +AL F+ M G RPD+ T++S+++ACA LG +E + + +
Sbjct: 309 YNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHL 368
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
L GNALIDM+AKCG + RA +F M+ R + TW+T+I G AF+G E++ ++ M
Sbjct: 369 TIAL-GNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNM 427
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
R V ++ F+ L AC H G ++EG F M ++YNI+P + HYG
Sbjct: 428 CREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGN 487
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
HG+ E +K++ + S VL+SN
Sbjct: 488 LQEAVLFIESMPLEPSVVIWATLLSSCVAHGNAEFIDYVSKKITELEPFNSSYQVLVSNS 547
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
A G W+ V R +M + I+K PG S I+
Sbjct: 548 SALEGRWDGVIGARTIMRNWGIEKVPGSSSIQ 579
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 164/540 (30%), Positives = 262/540 (48%), Gaps = 84/540 (15%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
++ K++ V GF S+++ + LI + G + AH +F +++EPD +N++I
Sbjct: 211 VKECKRVHGYVLKLGFGSNTAVVNSLI--AAYFKFGGVESAHNLFDELSEPDVVSWNSMI 268
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
G + + + ++ QM ++ + T VL AC + ++G +HG VK F
Sbjct: 269 NGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFS 328
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
N+L+ ++ CG+LN A+ +F +V+W+S+ A Y R G S A LFDEM
Sbjct: 329 EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEM 388
Query: 198 PV--------------------------RDLVSW-------------NVMITGYAKQGEM 218
RD+ S+ N +I YAK G +
Sbjct: 389 QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSV 448
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
E+A +F+++P +D+VSWN MI GY + +ALE+F +M+ +PDD+TM +L AC
Sbjct: 449 EEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQK-QFKPDDITMACVLPAC 507
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
A L L+ G+++H +L G LH AL+DMYAKCG + A +F + +D+ +
Sbjct: 508 AGLAALDKGREIHGHIL--RRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLIS 565
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+ +I G HGF E+I+ F EM+ + P E +F +L ACSH+G + EG K+F MR
Sbjct: 566 WTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMR 625
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
+E +EP + HY +H DV+L
Sbjct: 626 NECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLA 685
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + + D + YV+L+N+YA +W V+K+RK M K+ PGCS IE K
Sbjct: 686 EKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGK 745
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 179/387 (46%), Gaps = 50/387 (12%)
Query: 43 LIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK 102
L++S V P N H + T N I + + +A+ L T+ + +
Sbjct: 42 LLHSTVCVSPSFTNTTHSV--------TQNQNAKINKFCEMGDLRNAIELLTKSKSYELG 93
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
N ++ VL+ C G VH I+ G + + L++ + NCGDL +
Sbjct: 94 LN--SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKI 151
Query: 163 FDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS------------------ 204
FD V W+ L + YA+ G + SLF +M +V
Sbjct: 152 FDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKV 211
Query: 205 ---------------------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
N +I Y K G +E A+ LF+E+ + DVVSWN+MI+G
Sbjct: 212 KECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGC 271
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
V+ G + LE+F +M +G D T++S+L ACA++G+L +G+ +H + +
Sbjct: 272 VVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFS-EE 330
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
V+ N L+DMY+KCG++ A EVF+ M D + +W+++I G ++I +F EMQ
Sbjct: 331 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQS 390
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGK 390
VRP T ++ AC+ + +++G+
Sbjct: 391 KGVRPDIYTVTSIVHACACSSSLDKGR 417
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
NA I+ + G + A+E+ + +S + + S+L CA+ LE GK+VH ++
Sbjct: 65 NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 122
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
V + L G L+ MY CG + + ++F + + V W+ L+ A G ES++
Sbjct: 123 NGISVDEAL-GAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVS 181
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+F++MQ+L V TF VL + GKV+E K+
Sbjct: 182 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKR 216
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/497 (31%), Positives = 244/497 (49%), Gaps = 80/497 (16%)
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F ++ E D +NT+I QS N +A+ + M + +PN T + + +C RLL
Sbjct: 163 LFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLD 222
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
N G +H +++ GF + F+ ++L+ + CG L A +F+ K VVAW+S+ +G
Sbjct: 223 LNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISG 282
Query: 181 YARRGELSMARSLFDEM----------------------------------PVRDLVSWN 206
Y +G+ LF M +R+ + +
Sbjct: 283 YGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSD 342
Query: 207 VMITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
V I Y K G++E A +F +PK VVSWN MISGYV G +AL +F EMR
Sbjct: 343 VFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRK 402
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
PD +T S+LTAC+ L LE G+++H +++ +V+ G AL+DMYAKCG+++
Sbjct: 403 SYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMG-ALLDMYAKCGAVD 461
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A VF + RD+ +W+++I HG A ++ +F EM + ++P +TF+ +L AC
Sbjct: 462 EAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACG 521
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------- 410
HAG V+EG YF M + Y I P + HY
Sbjct: 522 HAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVEL 581
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+H +++LG + L++ D+S Y+LLSN+YAS +W+ V VR M +
Sbjct: 582 LSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKE 641
Query: 462 SDIKKQPGCSLIEADDK 478
+KK PGCS IE + K
Sbjct: 642 LGLKKNPGCSWIEINQK 658
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 155/321 (48%), Gaps = 42/321 (13%)
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKM 169
+L+AC G +H K+V G + + F+ +LI + +C + A +FD +
Sbjct: 9 LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPC 68
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEM-------------P------------------ 198
++ W+ L AGY + A LF+++ P
Sbjct: 69 EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMI 128
Query: 199 ---------VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
+ D+V + ++ YAK EKA LFNE+P++DV WN +IS Y G
Sbjct: 129 HTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNF 188
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
K+ALE F MR G P+ VT+ + +++CA L DL G ++H L++ + + +A
Sbjct: 189 KEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELIN-SGFLLDSFISSA 247
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
L+DMY KCG +E AIEVF M + V W+++I G G + I +F+ M V+PT
Sbjct: 248 LVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPT 307
Query: 370 EITFVGVLVACSHAGKVEEGK 390
T +++ CS + ++ EGK
Sbjct: 308 LTTLSSLIMVCSRSARLLEGK 328
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 154/338 (45%), Gaps = 43/338 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F ++ + +N++I G + + + L+ +M +KP T S ++
Sbjct: 256 GHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLI 315
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C+R G VHG ++ + + F+ +SL+ + CG + A +F K VV
Sbjct: 316 MVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVV 375
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITG----------------- 211
+W+ + +GY G+L A LF EM D +++ ++T
Sbjct: 376 SWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLI 435
Query: 212 ------------------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
YAK G +++A +F +PKRD+VSW +MI+ Y G AL
Sbjct: 436 IEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVAL 495
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
E+F EM +PD VT L++L+AC G ++ G ++++ + +V H + LID+
Sbjct: 496 ELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDL 555
Query: 314 YAKCGSIERAIEVFLG---MRDRDVSTWSTLIGGLAFH 348
+ G + A E+ +RD DV STL H
Sbjct: 556 LGRAGRLHEAYEILQQNPEIRD-DVELLSTLFSACRLH 592
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 150/304 (49%), Gaps = 30/304 (9%)
Query: 7 RSSRLWK-KCTNLRTLK-QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
RS+RL + K + T++ +IQ+ V IN S+L +L + G + A +F
Sbjct: 320 RSARLLEGKFVHGYTIRNRIQSDVFIN------SSLMDLYFKC-----GKVELAENIFKL 368
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
I + +N +I G +A+ L+++M K ++P+ TF+ VL AC++L G
Sbjct: 369 IPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKG 428
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H I++ + N V +L+ +A CG ++ A +F K D+V+W+S+ Y
Sbjct: 429 EEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSH 488
Query: 185 GELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNE-------VPKRDV 233
G+ +A LF EM D V++ +++ G +++ FN+ +P+ V
Sbjct: 489 GQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPR--V 546
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS-LLTACADLGDLEVGKKVHC 292
++ +I L G + E +E ++ E DDV +LS L +AC ++++G ++
Sbjct: 547 EHYSCLID---LLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIAR 603
Query: 293 TLLD 296
TL+D
Sbjct: 604 TLID 607
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 8/194 (4%)
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKV 290
++ WN +++GY M +ALE+FE++ +PD T S+L AC L +GK +
Sbjct: 69 EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMI 128
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
H T L T + ++ G++L+ MYAKC + E+AI +F M ++DV+ W+T+I G
Sbjct: 129 H-TCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGN 187
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK------LMRDEYNIEP 404
+E++ F M+R P +T + +C+ + G + + + D +
Sbjct: 188 FKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA 247
Query: 405 NIRHYGVHGDVELG 418
+ YG G +E+
Sbjct: 248 LVDMYGKCGHLEMA 261
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 167/557 (29%), Positives = 274/557 (49%), Gaps = 95/557 (17%)
Query: 11 LWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMF 62
L K C + L+Q + A + G +++ IY G+ ++ G++ A ++F
Sbjct: 312 LLKACNHPEALEQGKRVHARMKEVGLDTE-------IYVGTALLSMYTKCGSMEDALEVF 364
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
+ + + +I G AQ +A + +M + I+PN+ TF +L AC+R
Sbjct: 365 NLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALK 424
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
G +H +I+K G+ + VR +L+ +A CG L A +F+ +K +VVAW+++ Y
Sbjct: 425 QGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYV 484
Query: 183 RRGELSMARSLFDEM----------------------PVRDLVSW--------------- 205
+ + A + F + +L W
Sbjct: 485 QHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLH 544
Query: 206 --NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
N +++ + G++ A LFN++P+RD+VSWN +I+G+V G N+ A + F+ M+ G
Sbjct: 545 IRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESG 604
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
+PD +T LL ACA L G+++H L+ + V+ G LI MY KCGSI+ A
Sbjct: 605 VKPDQITFTGLLNACASPEALTEGRRLH-ALITEAALDCDVVVGTGLISMYTKCGSIDDA 663
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
VF + ++V +W+++I G A HG +E++ +F +MQ+ V+P ITFVG L AC+HA
Sbjct: 664 HLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHA 723
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G ++EG +F+ M+D +NIEP + HYG
Sbjct: 724 GLIKEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGA 782
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
VH DVEL ++ L + ++ G YV+LSNIYA+ G W V K+RK+M D +
Sbjct: 783 LLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGV 842
Query: 465 KKQPGCSLIEADDKAFL 481
K+PG S IE D + +
Sbjct: 843 VKKPGQSWIEVDGRVHI 859
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 123/457 (26%), Positives = 212/457 (46%), Gaps = 47/457 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G N A ++F ++ + D + +N ++ G Q + +A L+ QM + +KP+K+TF ++L
Sbjct: 153 GNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYML 212
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + G + I+ G++ + FV +LI H CG ++ A +F+ + D++
Sbjct: 213 NACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLI 272
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSW----------------------- 205
W+S+ G AR + A +LF M D V++
Sbjct: 273 TWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM 332
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
+++ Y K G ME A E+FN V R+VVSW AMI+G+ G ++A
Sbjct: 333 KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAF 392
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
F +M G P+ VT +S+L AC+ L+ G+++H ++ + AL+ M
Sbjct: 393 LFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIK-AGYITDDRVRTALLSM 451
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YAKCGS+ A VF + ++V W+ +I H + ++A F+ + + ++P TF
Sbjct: 452 YAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTF 511
Query: 374 VGVLVACSHAGKVEEGKKYFKL-MRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKD- 431
+L C +E GK L +R + + +IR+ V V G L + +N+ D
Sbjct: 512 TSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSA--MNLFNDM 569
Query: 432 ESGDYVLLSNI---YASRGEWNRVEKVRKLMDDSDIK 465
D V + I + GE K+M +S +K
Sbjct: 570 PERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVK 606
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 181/362 (50%), Gaps = 45/362 (12%)
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC--VHGKIVKYGFEFNRFVRNS 145
+A+ + ++ I+ ++ T+S +L+ C + ++N+G +H I + + F+ N
Sbjct: 87 EAMLVLLSVDSPHIQIHRQTYSSLLQLCIK--HKNLGDGERIHNHIKFSKIQPDIFMWNM 144
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------PV 199
LI +A CG+ N+A +FD DV +W+ L GY + A L ++M P
Sbjct: 145 LISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPD 204
Query: 200 R---------------------------------DLVSWNVMITGYAKQGEMEKANELFN 226
+ DL +I + K G ++ A ++FN
Sbjct: 205 KYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFN 264
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+P+RD+++W +MI+G KQA +F+ M G +PD V +SLL AC LE
Sbjct: 265 NLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQ 324
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
GK+VH + ++ ++ G AL+ MY KCGS+E A+EVF ++ R+V +W+ +I G A
Sbjct: 325 GKRVHARMKEVGLD-TEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFA 383
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIEPN 405
HG EE+ F +M + P +TF+ +L ACS +++G++ + ++++ Y +
Sbjct: 384 QHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDR 443
Query: 406 IR 407
+R
Sbjct: 444 VR 445
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 241/460 (52%), Gaps = 75/460 (16%)
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
+YA+++F I P+ ++N +I+ + PL+++ ++ M+ I +++T++ +LK+C
Sbjct: 53 DYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSC 112
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+ L G CVHG++++ GF +R G ++ VV
Sbjct: 113 SSLSDLRFGKCVHGELIRTGF--HRL-----------------------GKIRIGVVEL- 146
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
Y G + A+ +FDEM R++V WN+MI G+ G++E+ LF ++ +R +VS
Sbjct: 147 -----YTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVS 201
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WN+MIS CG +++ALE+F EM G PD+ T++++L A LG L+ GK +H T
Sbjct: 202 WNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHST-- 259
Query: 296 DMTSGVAK--VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+SG+ K + GNAL+D Y K G +E A +F M+ R+V +W+TLI G A +G E
Sbjct: 260 AESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEF 319
Query: 354 SIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV- 411
I +F M + KV P E TF+GVL CS+ G+VE G++ F LM + + +E HYG
Sbjct: 320 GIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAM 379
Query: 412 --------------------------------------HGDVELGRLANKRLLNMRKDES 433
HGDV+L +A L+ + S
Sbjct: 380 VDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNS 439
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
G+YVLLSN+YA G W VEKVR LM + ++K G S I
Sbjct: 440 GNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 161/370 (43%), Gaps = 53/370 (14%)
Query: 11 LWKKCTNLRTL---KQIQALVTINGFNSDSS---ALRELIYSGSVVIPGAINYAHKMFVK 64
L K C++L L K + + GF+ + EL SG G + A K+F +
Sbjct: 108 LLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSG-----GRMGDAQKVFDE 162
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
++E + ++N +IRG S + + L+ QM + SI S L C R
Sbjct: 163 MSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMIS-SLSKCGRDREALEL 221
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF-----DGDAKMDVVAWSSLTA 179
FC +++ GF+ + +++ A+ G L+T + G K + ++L
Sbjct: 222 FC---EMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVD 278
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
Y + G+L A ++F +M R++VSWN +I+G A G+ E +LF+
Sbjct: 279 FYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFD------------- 325
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
M EE + P++ T L +L C+ G +E G+++ +++
Sbjct: 326 --------------AMIEEGKVA---PNEATFLGVLACCSYTGQVERGEELFGLMMERFK 368
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMF 358
A+ H A++D+ ++ G I A + M + + + W +L+ HG + +A
Sbjct: 369 LEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHG--DVKLAEV 426
Query: 359 REMQRLKVRP 368
M+ +K+ P
Sbjct: 427 AAMELVKIEP 436
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 171/516 (33%), Positives = 264/516 (51%), Gaps = 58/516 (11%)
Query: 10 RLWKKCTNLRTL---KQIQALVTINGFNSDSSALREL----IYSGSVVIPGAINYAHKMF 62
L + C ++L K+I N N+DSS L +L + VV+ A ++F
Sbjct: 13 HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVL------ARRLF 66
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLD-AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
+I P ++N IIR A + P D A+ LY M ++PNK+T+ FVLKAC+ LL
Sbjct: 67 DEIPNPSVILWNQIIRAYAWN-GPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAI 125
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
G +H +G E + FV +L+ F+A CG L A LF + DVVAW+++ AG
Sbjct: 126 EDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGC 185
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGE-MEKANELFNEVPKRDVVSWNAMI 240
+ G A L +M + + I G + + A ++F+ + R+ VSW+AMI
Sbjct: 186 SLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMI 245
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
GYV K+AL++F M+ G PD TML +L AC+ L L+ G H L+ G
Sbjct: 246 GGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI--VRG 303
Query: 301 VAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
A L NALIDMY+KCG I A EVF M D+ +W+ +I G HG E++ +F
Sbjct: 304 FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFH 363
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI----------------- 402
++ L ++P +ITF+ +L +CSH+G V EG+ +F M +++I
Sbjct: 364 DLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRA 423
Query: 403 ---------------EPNIRHYG-------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
EP++R + +H ++ELG +K++ ++ + +G++VLLS
Sbjct: 424 GLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLS 483
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
NIY++ G W+ +R D +KK PGCS IE +
Sbjct: 484 NIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 519
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGM 330
L LL AC L KK+H L TS + VLH L +Y C + A +F +
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLH--KLTRLYLSCNQVVLARRLFDEI 69
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ V W+ +I A++G + +I ++ M L VRP + T+ VL ACS +E+G
Sbjct: 70 PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129
Query: 391 KYFKLMRDEYNIEPNIRHYGVHGDV 415
+ I + + +G+ DV
Sbjct: 130 E----------IHSHAKMFGLESDV 144
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 206/369 (55%), Gaps = 40/369 (10%)
Query: 149 FHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVM 208
+A G ++ A FD DV + + A Y R E++ AR +FD MP+RDLVSWN M
Sbjct: 1 MYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTM 60
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
I GYA +GE+ A E+F+ RD SW++MIS Y +K+ALE++ EM + PD
Sbjct: 61 IHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDC 120
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
+T++S+++AC+DLG L VG +VH ++ + G ALIDMYAKCG IE A VF
Sbjct: 121 ITLVSVVSACSDLGALAVGAEVH-RFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFD 179
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
M ++DV TWS++I GLA HG ES+++F +M ++P +TFVGVL+AC+H G V E
Sbjct: 180 RMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSE 239
Query: 389 GKKYFKLMRDEYNIEPNIRHYG-------------------------------------- 410
GKKYF+ M + + IEP + HYG
Sbjct: 240 GKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGAC 299
Query: 411 -VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469
+H +VE+ A +L + G YVLLSNIYA W V ++RK + +I++ PG
Sbjct: 300 RIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPG 359
Query: 470 CSLIEADDK 478
S IE D+K
Sbjct: 360 RSSIEWDEK 368
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 22/306 (7%)
Query: 36 DSSALRELIYSGSVV----IPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF 91
D +R+L+ +++ + G + A ++F + D F ++++I A+S+ +A+
Sbjct: 47 DGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALE 106
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151
L+ +M SI P+ T V+ AC+ L +G VH + E + + +LI +A
Sbjct: 107 LWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYA 166
Query: 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG 211
CGD+ +A +FD + DV WSS+ G A G + SLF +M + V G
Sbjct: 167 KCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVG 226
Query: 212 Y----AKQGEMEKANELF---NEVP--KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
G + + + F NEV + V + M+ L G + E + +RS+
Sbjct: 227 VLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVD---LLGRSGHVEEARQLIRSM 283
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTL--LDMTSGVAKVLHGNALIDMYAKCGSI 320
PD + +LL AC ++E+ ++ L LD VL N +YA+ S
Sbjct: 284 TFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSN----IYAQANSW 339
Query: 321 ERAIEV 326
E E+
Sbjct: 340 EGVAEM 345
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 153/508 (30%), Positives = 257/508 (50%), Gaps = 104/508 (20%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C +L+ L++I A V ++G + +L+ ++ + G++ YA +F ++ P T
Sbjct: 10 LLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQT 69
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMGFCVHG 129
+N+IIRG AQS +P+DA+ Y QM S P+ FTFSFVLKAC R+ VHG
Sbjct: 70 EAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHG 129
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+++ G++ DV+ ++L Y+ G + +
Sbjct: 130 SVIRCGYD-------------------------------ADVIVCTNLVKCYSAMGLVCI 158
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
AR ++F+++P RD+V+WNAMIS + G++
Sbjct: 159 AR-------------------------------QVFDKMPARDLVAWNAMISCFSQQGLH 187
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GN 308
++AL+ + +MRS D T++ L+++CA LG L +G ++H +G+ + L+ GN
Sbjct: 188 QEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMH--RFARENGLDQSLYVGN 245
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
ALIDMYAKCGS+++AI +F M+ +D+ TW+++I G HG E+I F++M +++P
Sbjct: 246 ALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQP 305
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
+TF+G+L CSH G V+EG KYF LM ++ ++P ++HYG
Sbjct: 306 NPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEI 365
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+H +V +G +A RL + +GD +LL+ IYA +
Sbjct: 366 VSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKA 425
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDK 478
V ++RK++ K PG S IE ++
Sbjct: 426 GVARMRKMIKSQGKKTTPGWSWIEIGEQ 453
>gi|147862347|emb|CAN84022.1| hypothetical protein VITISV_004991 [Vitis vinifera]
Length = 566
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 160/484 (33%), Positives = 249/484 (51%), Gaps = 22/484 (4%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KC L+ KQ+ A++ + + + ++ + G G + A + + P+ F +
Sbjct: 36 KCKALQPGKQVHAMLLASRIDMNILSMSSKLV-GMYASCGDLQSARLVLERTQNPNVFAF 94
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
N ++ A +A+ ++ M++ I NKFTFS VLK C L+ N G VH I +
Sbjct: 95 NWMVSALAFHGYHEEAIGYFSLMQELGIVANKFTFSIVLKQCVGLMDFNKGKEVHCVISR 154
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
G V NS I + CG + +FDG + DVV+W+S+ GY G L A L
Sbjct: 155 TGLGNVVSVANSXIDMYCKCGHVGYGRKVFDGMIERDVVSWTSMICGYCNIGTLEEALVL 214
Query: 194 FDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVPKR----DVVSWNAMISGYVL 245
F+ M V L +WN MI GYA+ G+ A LF+ + + D+V+WNAMISG+
Sbjct: 215 FERMKVEGLEPNDFTWNXMIAGYARDGDCNGAFVLFSRMVREGLVPDLVTWNAMISGFTQ 274
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
+A +F++M G +P+ VT+ LL AC +G + GK++H + M + V
Sbjct: 275 SLKAVEAWRLFQDMXVAGIKPNQVTVTGLLPACGLMGSIHRGKELHGLIYRMGXDM-NVF 333
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
ALID Y+KCG+++ A +VF + ++V++W+ +IG HG + SI +F MQ
Sbjct: 334 VATALIDXYSKCGTVKDAWDVFDRIPIKNVASWNAMIGCYGKHGLVDSSIQLFERMQAEG 393
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMR-----DEYNIEPNIRHYG-------VHG 413
++ IT + VL ACSH G VE+G F+++ E IE G +HG
Sbjct: 394 MQANHITLISVLSACSHGGLVEKGLTIFRMVEAYELFKEMPIEVTDSIVGAFFNGCKIHG 453
Query: 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+L + + +L M G +V LSNIYA+ GEW VE +RK+M + + K+PG S +
Sbjct: 454 RRDLAKXMAEDILRMELKRPGGFVTLSNIYAADGEWEEVENIRKVMKEQGVHKKPGFSWV 513
Query: 474 EADD 477
E D
Sbjct: 514 EKRD 517
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%)
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
C L+ GK+VH LL + + + L+ MYA CG ++ A V ++ +V
Sbjct: 34 CLKCKALQPGKQVHAMLLASRIDMNILSMSSKLVGMYASCGDLQSARLVLERTQNPNVFA 93
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
++ ++ LAFHG+ EE+I F MQ L + + TF VL C +GK+
Sbjct: 94 FNWMVSALAFHGYHEEAIGYFSLMQELGIVANKFTFSIVLKQCVGLMDFNKGKE 147
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 180/568 (31%), Positives = 279/568 (49%), Gaps = 102/568 (17%)
Query: 9 SRLW----KKCTNL---------RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG-- 53
S+LW +KC N+ +TL +I A + N +++ L + I S + +
Sbjct: 2 SQLWSNTERKCFNILQSSKTKTFKTLLEIHAFILRNSLHNNLHLLTKFISSSTSLALSTP 61
Query: 54 ------AINYAHKMFVKITEP---DTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CSIKP 103
+I ++F T P D F+ NTII + LY Q K C +P
Sbjct: 62 RRNDAVSIVQHARLFFNHTPPHKCDEFLCNTIINAHFSLRQFNHGFTLYNQFSKDCFFRP 121
Query: 104 NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL----------------- 146
+ +TF+ +LK C+ + GF +HG ++K F + +V SL
Sbjct: 122 SSYTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVF 181
Query: 147 --------------IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
I +A CGD+ A LFDG DV A++ + GY + G + +AR
Sbjct: 182 DEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKMGRMDLARD 241
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
LFD+M V++++SW M+ GY++ G++++A LF+ +P+++V+SWNAMI GY G + A
Sbjct: 242 LFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDA 301
Query: 253 LEMFEEMR-SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL-DMTSGVAKVLHGNAL 310
L++F EMR +V ++VT++S+L A ADL L++G VH + + G V NAL
Sbjct: 302 LKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHVC--NAL 359
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMYAKCG I +A VF M ++D +W+ LI G +G A+E++ +F M R P +
Sbjct: 360 VDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQ 419
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLAN-------- 422
IT VL AC+H G VEEG++ F+ M + + I P I HYG D+ LGR
Sbjct: 420 ITMTSVLSACNHCGLVEEGRRCFEAM-ERFGIVPQIEHYGCMIDL-LGRAGRLDEAEKLI 477
Query: 423 --------------------------------KRLLNMRKDESGDYVLLSNIYASRGEWN 450
K + M K+ +GDYV+L N+YA+ W
Sbjct: 478 QAMPYDPNEIILTSFLFACCYFEDVSRAERILKVAVKMEKEGAGDYVMLRNLYATERRWA 537
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDK 478
VE V+++M K+ S+IE D +
Sbjct: 538 DVEDVKEMMKKRGSNKEVAWSVIEVDGR 565
>gi|255541023|ref|XP_002511576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550691|gb|EEF52178.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 221/379 (58%), Gaps = 3/379 (0%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
K C N+ +LKQ A V G +D + +L+ ++V+ +I+YA +F PD FM
Sbjct: 13 KNCKNVASLKQFHANVLKIGLQNDLLLIGKLLLHCTIVLSDSIDYALSLFRDTPNPDVFM 72
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEK-CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
YNT+IRG A+S +P ++ + ++ K ++ P+ F+F+FVLKA L G +H +
Sbjct: 73 YNTLIRGLAESDSPQKSIATFLELRKESALSPDSFSFAFVLKAAAYLRSLRGGIQLHCQA 132
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
KYG + FV +LI + CG + A +F + +V+AW+++ A R G++ A
Sbjct: 133 WKYGLNAHLFVGTTLISMYGECGCVGYARQVFGEMHEPNVIAWNAVIAACFRGGDVKEAG 192
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+F M RDL SWNVM+ GY K GE++ A E+F E+ +D VSW+ MI G+ G +
Sbjct: 193 KMFSLMVFRDLTSWNVMLAGYVKIGELQLAREMFLEMAVKDDVSWSTMIVGFAHNGCFDE 252
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
A F E+ G RP++V++ +L+ACA G E GK +H ++ + + NAL+
Sbjct: 253 AFGYFRELLRKGTRPNEVSLTGVLSACAQAGAFEFGKILH-GFIEKAGLLWIISVNNALL 311
Query: 312 DMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
D Y+KCG++ A VF M + + + +W++++ LA HG EE+I +F EM+ RP E
Sbjct: 312 DTYSKCGNLGMAQLVFERMPEKKSIISWTSMMACLAMHGLGEEAIKLFHEMEEYGTRPDE 371
Query: 371 ITFVGVLVACSHAGKVEEG 389
ITF+ +L ACSHAG VE+G
Sbjct: 372 ITFILLLYACSHAGLVEQG 390
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 107/243 (44%), Gaps = 53/243 (21%)
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS-------------- 235
A SLF + P D+ +N +I G A+ +K+ F E+ K +S
Sbjct: 58 ALSLFRDTPNPDVFMYNTLIRGLAESDSPQKSIATFLELRKESALSPDSFSFAFVLKAAA 117
Query: 236 ---------------W-----------NAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
W +IS Y CG A ++F EM P+ +
Sbjct: 118 YLRSLRGGIQLHCQAWKYGLNAHLFVGTTLISMYGECGCVGYARQVFGEMH----EPNVI 173
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+++ AC GD++ K+ ++ D+TS N ++ Y K G ++ A E+F
Sbjct: 174 AWNAVIAACFRGGDVKEAGKMFSLMVFRDLTSW-------NVMLAGYVKIGELQLAREMF 226
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
L M +D +WST+I G A +G +E+ FRE+ R RP E++ GVL AC+ AG E
Sbjct: 227 LEMAVKDDVSWSTMIVGFAHNGCFDEAFGYFRELLRKGTRPNEVSLTGVLSACAQAGAFE 286
Query: 388 EGK 390
GK
Sbjct: 287 FGK 289
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 153/466 (32%), Positives = 246/466 (52%), Gaps = 72/466 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G +N A K+F ++ E D +NTI+ A+ +A+ LY + + N F+F+ VL
Sbjct: 143 GDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVL 202
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C +L + VHG+++ GF N +V
Sbjct: 203 ILCVKLKELQLAKQVHGQVLVAGFLSN-------------------------------LV 231
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
SS+ YA+ GE+ AR+LFDEM V+D+ +W +++GYAK G+M A+ELF+++P+++
Sbjct: 232 LSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKN 291
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW+A+ISGY + +AL+ F +M G P+ T S L ACA + L+ GK+VH
Sbjct: 292 PVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHG 351
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHGFA 351
L+ T + ++LIDMY+KCG +E + VF M ++ DV W+T+I LA +G
Sbjct: 352 YLIR-TYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHG 410
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
E+++ MF +M ++P ITF+ +L ACSH+G V+EG ++FK M ++ + P+ HY
Sbjct: 411 EKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSC 470
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+H ++ELGR +R++ ++
Sbjct: 471 LIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQS 530
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
S YV L+++YA G+W VEKVR+LMD+ I+K+ G S I+ +K
Sbjct: 531 SAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNK 576
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 164/325 (50%), Gaps = 15/325 (4%)
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
+++ S+Q + P +A+ ++ + ++ F +L+ C + Y G CVH +
Sbjct: 32 QSLLDLSSQGRLP-EALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKH 90
Query: 134 YGFEF-NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
GF+ V N LI + CG A +FD + ++ +W+ + AGYA+ G+++ AR
Sbjct: 91 TGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARK 150
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM-ISGYVLCGMNKQ 251
LFD M +D+VSWN ++ YAKQG +A L+ + + D + +NA +G ++ + +
Sbjct: 151 LFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLD-MGFNAFSFAGVLILCVKLK 209
Query: 252 ALEMFEEMRS----VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
L++ +++ G + V S++ A A G++ + TL D + K +H
Sbjct: 210 ELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCAR----TLFDEM--LVKDIHA 263
Query: 308 -NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
++ YAK G + A E+F M +++ +WS LI G A + E++ F +M + +
Sbjct: 264 WTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGI 323
Query: 367 RPTEITFVGVLVACSHAGKVEEGKK 391
P + TF L AC+ ++ GK+
Sbjct: 324 NPEQYTFSSCLCACASIAALKHGKQ 348
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 155/502 (30%), Positives = 252/502 (50%), Gaps = 65/502 (12%)
Query: 50 VIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTF 108
V G ++ A ++F KI P+ + T++ G A+ +A L+ +M K + N
Sbjct: 215 VKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIA 274
Query: 109 SFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVR------NSLIYFHANCGDLNTASVL 162
++V + H V + N ++R +Y C D+ + L
Sbjct: 275 TYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTAL 334
Query: 163 FDGDAK----------------MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWN 206
G + DVV W+S+ AGY+R G + A +LF +MP+++ VSWN
Sbjct: 335 MSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWN 394
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
MI+GYA+ G+M++A E+F + ++++VSWN++I+G++ + AL+ M G++P
Sbjct: 395 TMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKP 454
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D T L+ACA+L L+VG ++H +L + + + GNALI MYAKCG ++ A +V
Sbjct: 455 DQSTFACTLSACANLAALQVGNQLHEYILK-SGYMNDLFVGNALIAMYAKCGRVQSAEQV 513
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F + D+ +W++LI G A +G+A ++ F +M +V P E+TF+G+L ACSHAG
Sbjct: 514 FRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLA 573
Query: 387 EEGKKYFKLMRDEYNIEPNIRHYG------------------------------------ 410
+G FK M +++ IEP HY
Sbjct: 574 NQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLG 633
Query: 411 ---VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
VH ++ELGR A +RL + + +Y+ LSN++A G W VE+VR LM KQ
Sbjct: 634 ACRVHKNLELGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLMRGKRAGKQ 693
Query: 468 PGCSLIEADDKAFLQYLFNLKP 489
PGCS IE ++ +Q+ + P
Sbjct: 694 PGCSWIEVQNQ--IQHFLSHDP 713
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 180/354 (50%), Gaps = 25/354 (7%)
Query: 41 RELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS 100
R++I G + G + A ++F +T + YN++I A++ DA L+ QM S
Sbjct: 22 RQIIQLGKL---GKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQM---S 75
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
++ N +++ ++ L+ NM ++ E + F +I + G L A
Sbjct: 76 LR-NLVSWNTMIAG---YLHNNM-VEEASELFDVMPERDNFSWALMITCYTRKGKLEKAR 130
Query: 161 VLFD-GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
L + K+D W+++ AGYA++G+ + A+ +F++MP +DLVS+N M+ GY + G+M
Sbjct: 131 ELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMH 190
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
A + F + +R+VVSWN M++GYV G A ++FE++ + P+ V+ +++L A
Sbjct: 191 LALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPN----PNAVSWVTMLCGLA 246
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
G + ++ L D V+ NA+I Y + ++ A+++F M +D +W+
Sbjct: 247 KYGKMAEARE----LFDRMPS-KNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWT 301
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
T+I G G +E+ ++ +M + G++ G+++E + F
Sbjct: 302 TIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLI----QNGRIDEADQMF 351
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 144/258 (55%), Gaps = 17/258 (6%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
NS++ + G ++ A F+ + +VV+W+ + AGY + G+LS A LF+++P + V
Sbjct: 177 NSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAV 236
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SW M+ G AK G+M +A ELF+ +P ++VVSWNAMI+ YV +A+++F++M
Sbjct: 237 SWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKM---- 292
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIE 321
D V+ +++ +G L+ ++V+ + D+T+ AL+ + G I+
Sbjct: 293 PHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQT-------ALMSGLIQNGRID 345
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A ++F + DV W+++I G + G +E++ +FR+M +++ ++ +
Sbjct: 346 EADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMP----IKNSVSWNTMISGYA 401
Query: 382 HAGKVEEGKKYFKLMRDE 399
AG+++ + F+ MR++
Sbjct: 402 QAGQMDRATEIFQAMREK 419
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 155/339 (45%), Gaps = 18/339 (5%)
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G+ K+ F NR I G + A +F ++V ++S+ + A+ +
Sbjct: 11 GEAGKHAFNHNR-----QIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIR 65
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
AR LFD+M +R+LVSWN MI GY +E+A+ELF+ +P+RD SW MI+ Y G
Sbjct: 66 DARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGK 125
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
++A E+ E V ++ D +++ A G KKV + ++ N
Sbjct: 126 LEKARELLE---LVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQM-----PAKDLVSYN 177
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+++ Y + G + A++ F M +R+V +W+ ++ G G + +F ++ P
Sbjct: 178 SMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIP----NP 233
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNM 428
+++V +L + GK+ E ++ F M + + N D+++ A K M
Sbjct: 234 NAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDE-AVKLFKKM 292
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
+S + + N Y G+ + +V M DI Q
Sbjct: 293 PHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQ 331
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 162/515 (31%), Positives = 251/515 (48%), Gaps = 79/515 (15%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVK 64
R++ L C+ R ++ A V G +SD + L Y+ S G ++++ + +
Sbjct: 26 RAASLLAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAAS----GRLDHSLTLLGR 81
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+P T Y + I + L + L + M + P T S L AC L ++G
Sbjct: 82 TKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGL---SLG 138
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H K + +V +L+ YAR
Sbjct: 139 RALHAYAFKLALSGDSYVATALLSM-------------------------------YARA 167
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G+ + AR+LFDEMP +VS M+T YA G ++ A LF+ +P++D + WNAMI GY
Sbjct: 168 GDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYT 227
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G +AL++F M PD+VT++ +L+A A LG +E GK +H + + V
Sbjct: 228 QHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNV 287
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
AL+DMY KCGS+E A+ VF G+ ++D+ W+ +I G A HG + +++ MF +++
Sbjct: 288 RVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQ 347
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------- 410
+ PT+ITF+G+L ACSH+G VEEG+ +F+ M EY I+P I HYG
Sbjct: 348 GLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEE 407
Query: 411 -------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
+H ++ LG+ L+ SG Y+LLSNIYA+
Sbjct: 408 AFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAA 467
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
G+W V +VR +M S I+K+PGCS IE D K +
Sbjct: 468 VGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVY 502
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 201/356 (56%), Gaps = 42/356 (11%)
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK 220
+L G D +SL Y ++ ARS+F EM VRD+V+WNVMI GY K G++
Sbjct: 104 LLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGYVKAGDLAH 163
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A ELF+ +P+R+VVSW +I GY ++A+E+F M+ G PD V +LS+L+AC D
Sbjct: 164 ARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGD 223
Query: 281 LGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
LG +++G+ VH ++ G+ ++ N++IDMY KCG IE+A+EVF GM ++ V TW+
Sbjct: 224 LGAVDLGEWVHRFVV--RRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWT 281
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
TLI G A HG +++ MFR M+R + P ++TF+ +L ACSH G + G+ YF +M +
Sbjct: 282 TLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQ 341
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y I+P + HYG HGD +LG
Sbjct: 342 YRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHGDADLGEE 401
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
A L+ + SG+Y+LLSNI+A + W+ V K+RK M + ++ PG S IE D
Sbjct: 402 ALVHLIELEPSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGLRNVPGASSIEVD 457
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 120/254 (47%), Gaps = 12/254 (4%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + +A ++F + E + + T+I G AQ + P +AV ++ +M+ I+P+ VL
Sbjct: 159 GDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVL 218
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L ++G VH +V+ G + NS+I + CG + A +F+G + VV
Sbjct: 219 SACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVV 278
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV 228
W++L AG+A G A +F M ++ V++ +++ + G + FN +
Sbjct: 279 TWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIM 338
Query: 229 P-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
K V + M+ G K+A ++ ++M + + +LL A GD
Sbjct: 339 VSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPL---KANAAIWGALLAASRTHGD 395
Query: 284 LEVGKKVHCTLLDM 297
++G++ L+++
Sbjct: 396 ADLGEEALVHLIEL 409
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 237/465 (50%), Gaps = 67/465 (14%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A + +TE +N +I G L+A+ ++ +M I+ ++FT++ VL
Sbjct: 239 GELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVL 298
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC N GF +HGK V + + R SL D + V
Sbjct: 299 SACA-----NAGFFLHGKQV-HAYILRTEPRPSL-------------------DFSLSVN 333
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
++L Y + G++ AR +F++MPV+DLVSWN +++GY G +++A F E+P+R+
Sbjct: 334 --NALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERN 391
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+++W MISG G +++L++F M+S G P D + ACA L L G+++H
Sbjct: 392 LLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHA 451
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
L+ + + + GNALI MYAKCG +E A +FL M D +W+ +I L HG
Sbjct: 452 QLVRLGFD-SSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGA 510
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+++ +F M + + P ITF+ VL CSHAG VEEG +YFK M Y I P HY
Sbjct: 511 QALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARM 570
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG+++LG A +RL +
Sbjct: 571 IDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHD 630
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G YVLLSN+YA+ G W+ V KVRKLM D +KK+PGCS IE ++K
Sbjct: 631 GTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENK 675
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 172/364 (47%), Gaps = 69/364 (18%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC-- 126
DT YN +I G + + + A+ L+ + + +P+ FTF+ VL A L+ + C
Sbjct: 113 DTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALA-LIVEDEKQCQQ 171
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H +VK G F V N+L+ C + + +
Sbjct: 172 IHCAVVKSGSGFVTSVLNALLSVFVKC----------------------ASSPLVSSSSL 209
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
++ AR LFDEM RD +SW MI GY + GE++ A + + + ++ VV+WNAMISGYV
Sbjct: 210 MAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHH 269
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL--------LDMT 298
G +ALEMF +M +G + D+ T S+L+ACA+ G GK+VH + LD +
Sbjct: 270 GFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFS 329
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEV-------------------------------F 327
V NAL +Y KCG ++ A +V F
Sbjct: 330 LSV-----NNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFF 384
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
M +R++ TW+ +I GLA +GF EES+ +F M+ P + F G ++AC+ +
Sbjct: 385 EEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALM 444
Query: 388 EGKK 391
G++
Sbjct: 445 HGRQ 448
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 138/309 (44%), Gaps = 77/309 (24%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VH ++ GF+ ++ N LI + DL +A LFD + D+VA ++L A ++ G
Sbjct: 37 VHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGN 96
Query: 187 LSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
++AR +F P +RD V +N MITGY+ N+ F
Sbjct: 97 SNLAREIFFATPLGIRDTVCYNAMITGYSHN------NDGFG------------------ 132
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL-GDLEVGKKVHCTLLDMTSG-VA 302
A+E+F ++ G RPD+ T S+L A A + D + +++HC ++ SG V
Sbjct: 133 -------AIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVT 185
Query: 303 KVLHGNALIDMYAKC----------------------------------------GSIER 322
VL NAL+ ++ KC G ++
Sbjct: 186 SVL--NALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDA 243
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A + GM ++ V W+ +I G HGF E++ MFR+M L ++ E T+ VL AC++
Sbjct: 244 ARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACAN 303
Query: 383 AGKVEEGKK 391
AG GK+
Sbjct: 304 AGFFLHGKQ 312
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 149/341 (43%), Gaps = 30/341 (8%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
+ L+ KC + +Q+ + + S ++ I SG V G I+ A F ++ E
Sbjct: 337 ATLYWKCGKVDEARQVFNQMPVKDLVSWNA-----ILSG-YVNAGRIDEAKSFFEEMPER 390
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ + +I G AQ+ +++ L+ +M+ +P + F+ + AC L G +H
Sbjct: 391 NLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLH 450
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
++V+ GF+ + N+LI +A CG + A LF +D V+W+++ A + G +
Sbjct: 451 AQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGA 510
Query: 189 MARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV-------PKRDVVSWN 237
A LF+ M D+ +++ +++ + G +E+ + F + P D +
Sbjct: 511 QALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGED--HYA 568
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
MI G +A +M E M P +LL C G++++G + L ++
Sbjct: 569 RMIDLLCRAGKFSEAKDMIETMPV---EPGPPIWEALLAGCRIHGNMDLGIQAAERLFEL 625
Query: 298 TSGVAKVLHGNALI---DMYAKCGSIERAIEVFLGMRDRDV 335
H + +MYA G + +V MRD+ V
Sbjct: 626 MPQ-----HDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGV 661
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 161/529 (30%), Positives = 268/529 (50%), Gaps = 64/529 (12%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGF--NSDSSALRELIYSGSVVIPGAINYAHKMF 62
H L + CT+L TLK I + ++ GF ++ R +I + G ++ A +F
Sbjct: 25 HHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKL---GDLHSARTLF 81
Query: 63 --------VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
P++F+ NT++R A + +A+ LY M++ + N FT+ FVLK
Sbjct: 82 DHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKV 141
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C L G VHG++V+ GF + FV +L+ +A CG++ A +FD DVV W
Sbjct: 142 CASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCW 201
Query: 175 SSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGE----MEKANELFN 226
+++ Y + A LF +M + D ++ + + + G+ + +A +F+
Sbjct: 202 TAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFD 261
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+ +R+ +SWN+M+SGY G AL +F +M++ P+ VT L +++AC+ LG +
Sbjct: 262 RMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHL 321
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGG 344
G+K+H ++ + L NA++DMY KCG ++ A+E+F + +RDVS+W+ LI G
Sbjct: 322 GRKLHNFVISSKMDIDTTLR-NAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISG 380
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
HG +E++ +F MQ V P +ITF +L ACSHAG ++EG+K F M + ++ P
Sbjct: 381 YGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADM-TKLSVRP 439
Query: 405 NIRHYG---------------------------------------VHGDVELGRLANKRL 425
++HY +HG+ ELG +A L
Sbjct: 440 EMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNL 499
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ + +G YVL+SNIYA+ +W VE VR+ M +KK S+IE
Sbjct: 500 FQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIE 548
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 171/538 (31%), Positives = 259/538 (48%), Gaps = 87/538 (16%)
Query: 22 KQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIR 78
K++ A V GF SD +AL + G G+++ A ++F + D +N ++
Sbjct: 178 KEVHAQVVTAGFVSDFRIGTALVSMYVKG-----GSMDDARQVFDGLHIRDVSTFNVMVG 232
Query: 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEF 138
G A+S + A L+ +M++ +KPNK +F +L C G VH + + G
Sbjct: 233 GYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVD 292
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM- 197
+ V SLI + CG + A +FD DVV+W+ + GYA G + A LF M
Sbjct: 293 DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQ 352
Query: 198 -----PVR---------------------------------DLVSWNVMITGYAKQGEME 219
P R DL+ ++ YAK G ++
Sbjct: 353 EEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIK 412
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
A ++F+ +P+RDVVSW+AMI YV G +A E F M+ PD VT ++LL AC
Sbjct: 413 DARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACG 472
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
LG L+VG +++ + V+ V GNALI M AK GS+ERA +F M RDV TW+
Sbjct: 473 HLGALDVGMEIYTQAIK-ADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWN 531
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+IGG + HG A E++ +F M + + RP +TFVGVL ACS AG V+EG+++F + +
Sbjct: 532 AMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEG 591
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
I P ++ YG +HG++++
Sbjct: 592 RGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAER 651
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
A +R L + + YV LS++YA+ G W V KVRK+M+ I+K+ GC+ IE K
Sbjct: 652 AAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGK 709
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/437 (28%), Positives = 201/437 (45%), Gaps = 49/437 (11%)
Query: 1 NRTNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAI 55
N + +L+++CT LR KQ++ + G + L LI YS I G +
Sbjct: 53 NHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYS----ICGNV 108
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
A ++F + +N +I G AQ + +A L+ QM ++P+ TF VL AC
Sbjct: 109 TEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDAC 168
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+ N G VH ++V GF + + +L+ + G ++ A +FDG DV ++
Sbjct: 169 SSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFN 228
Query: 176 SLTAGYARRGELSMARSLFDEMP------------------------------------- 198
+ GYA+ G+ A LF M
Sbjct: 229 VMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNA 288
Query: 199 --VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
V D+ +I Y G +E A +F+ + RDVVSW MI GY G + A +F
Sbjct: 289 GLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLF 348
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
M+ G +PD +T + ++ ACA +L +++H + +D+ +L AL+ MYAK
Sbjct: 349 ATMQEEGIQPDRITYMHIMNACAISANLNHAREIH-SQVDIAGFGTDLLVSTALVHMYAK 407
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CG+I+ A +VF M RDV +WS +IG +G+ E+ F M+R + P +T++ +
Sbjct: 408 CGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINL 467
Query: 377 LVACSHAGKVEEGKKYF 393
L AC H G ++ G + +
Sbjct: 468 LNACGHLGALDVGMEIY 484
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 132/249 (53%), Gaps = 12/249 (4%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N +I Y+ G + +A ++F+ V + VV+WNA+I+GY G K+A +F +M G
Sbjct: 96 NTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLE 155
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAKCGSIERAI 324
P +T LS+L AC+ L GK+VH ++ T+G V+ G AL+ MY K GS++ A
Sbjct: 156 PSIITFLSVLDACSSPAGLNWGKEVHAQVV--TAGFVSDFRIGTALVSMYVKGGSMDDAR 213
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
+VF G+ RDVST++ ++GG A G E++ +F MQ++ ++P +I+F+ +L C
Sbjct: 214 QVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPE 273
Query: 385 KVEEGKKYFK------LMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVL 438
+ GK L+ D IR Y G +E R + NM+ + + +
Sbjct: 274 ALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGAR---RVFDNMKVRDVVSWTV 330
Query: 439 LSNIYASRG 447
+ YA G
Sbjct: 331 MIEGYAENG 339
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
A ++ + + G D T + L C +L D +GK+V ++ + + N LI
Sbjct: 41 ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQL-NIYELNTLI 99
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
+Y+ CG++ A ++F + ++ V TW+ LI G A G +E+ A+FR+M + P+ I
Sbjct: 100 KLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSII 159
Query: 372 TFVGVLVACSHAGKVEEGKK 391
TF+ VL ACS + GK+
Sbjct: 160 TFLSVLDACSSPAGLNWGKE 179
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 160/507 (31%), Positives = 262/507 (51%), Gaps = 82/507 (16%)
Query: 43 LIYSGSVVIPGAINYAHKMF-VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CS 100
L+ S S V I YA K+F + D+F+ N++I+ ++++ D+ Y + K
Sbjct: 17 LVISASAV---GIGYARKLFDQRPHREDSFLCNSMIKAYLETRHYNDSFAFYRDLRKETC 73
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
+ P+ FTF+ + K+CT + G +H +I + GF + +V ++ +A G + A
Sbjct: 74 LAPDNFTFTTMTKSCTLSMCVYQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFGKMGCAR 133
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEME 219
+FD + V+W++L GY R GEL +A LFD+MP V+D+V +N M+ G+ K G+M
Sbjct: 134 NVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQMPQVKDVVIYNAMMDGFVKSGDMT 193
Query: 220 KANELFNEV-------------------------------PKRDVVSWNAMISGYVLCGM 248
A LF+E+ P+R++VSWN MI GY
Sbjct: 194 SARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQ 253
Query: 249 NKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
++A+ +F+EM++ PDDVT+LS+L A +D G L +G+ HC + + KV
Sbjct: 254 PQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHC-FVQRKNLDKKVKVC 312
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
A++DMY+KCG IE+A +F M ++ V++W+ +I G A +G A ++ +F M + + +
Sbjct: 313 TAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAK-EEK 371
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLAN----- 422
P EIT + V+ AC+H G VEEG+K+F++MR ++ + I HYG D+ LGR N
Sbjct: 372 PDEITMLAVISACNHGGLVEEGRKWFQMMR-KFGLNAKIEHYGCMVDL-LGRAGNLKQAE 429
Query: 423 -----------------------------------KRLLNMRKDESGDYVLLSNIYASRG 447
K+ + + G+YVLL N+YA+
Sbjct: 430 HLITNMPFKPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADK 489
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIE 474
W+ V+ +M ++ KK+ GCSLIE
Sbjct: 490 RWDDFGMVKNMMRKNEAKKEVGCSLIE 516
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 246/466 (52%), Gaps = 72/466 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G +N A K+F ++ E D +NTI+ A+ +A+ LY + + N F+F+ VL
Sbjct: 143 GDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVL 202
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C +L + VHG+++ GF N +V
Sbjct: 203 ILCVKLKELQLAKQVHGQVLVAGFLSN-------------------------------LV 231
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
SS+ Y++ GE+ AR+LFDEM V+D+ +W +++GYAK G+M A+ELF+++P+++
Sbjct: 232 LSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKN 291
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW+A+ISGY + +AL+ F +M G P+ T S L ACA + L+ GK+VH
Sbjct: 292 PVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHG 351
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHGFA 351
L+ T + ++LIDMY+KCG +E + VF M ++ DV W+T+I LA +G
Sbjct: 352 YLIR-TYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHG 410
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
E+++ MF +M ++P ITF+ +L ACSH+G V+EG ++FK M ++ + P+ HY
Sbjct: 411 EKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYAC 470
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+H ++ELGR +R++ ++
Sbjct: 471 LIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQS 530
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
S YV L+++YA G+W VEKVR+LMD+ I+K+ G S I+ +K
Sbjct: 531 SAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNK 576
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 164/325 (50%), Gaps = 15/325 (4%)
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
+++ S+Q + P +A+ ++ + I+ F +L+ C + Y G CVH +
Sbjct: 32 QSLLDLSSQGRLP-EALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKH 90
Query: 134 YGFEF-NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
GF+ V N LI + CG A +FD + ++ +W+ + AGYA+ G+++ AR
Sbjct: 91 TGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARK 150
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM-ISGYVLCGMNKQ 251
LFD M +D+VSWN ++ YAKQG +A L+ + + D + +NA +G ++ + +
Sbjct: 151 LFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLD-MGFNAFSFAGVLILCVKLK 209
Query: 252 ALEMFEEMRS----VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
L++ +++ G + V S++ A + G++ + TL D + K +H
Sbjct: 210 ELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCAR----TLFDEM--LVKDIHA 263
Query: 308 -NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
++ YAK G + A E+F M +++ +WS LI G A + E++ F +M + +
Sbjct: 264 WTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGI 323
Query: 367 RPTEITFVGVLVACSHAGKVEEGKK 391
P + TF L AC+ ++ GK+
Sbjct: 324 NPEQYTFSSCLCACASIAALKHGKQ 348
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 158/513 (30%), Positives = 253/513 (49%), Gaps = 79/513 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAI-NYAHKMFVKITEPDTF 71
+KC L LKQ+ A + N AL L+ + + +YA +F +T +TF
Sbjct: 13 QKCNTLTQLKQLHAHILRCRINDTPYALAPLLSVLATSNDASFFSYARSIFRHLTNRNTF 72
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN----MGFCV 127
M+NT+IRG Q ++PL AV Y M + + N +TF ++KAC LL + +G V
Sbjct: 73 MHNTMIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNIVGRLV 132
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG +VK+G + +V ++ I F++ +++TA VLFD + DVV +++ GY + G +
Sbjct: 133 HGHVVKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVVLGTAMVDGYGKMGNV 192
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
AR +FD+MP R+ VSW+ M+ Y++ +
Sbjct: 193 KSAREVFDKMPERNAVSWSAMMAAYSRVSDF----------------------------- 223
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
K+ L +F EM++ G P++ ++++LTACA LG L G VH +L
Sbjct: 224 --KEVLALFTEMQNEGTEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPIL-A 280
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
AL+DMY+KCG +E A+ VF + D+D W+ +I G A +G A +S+ +FR+M + +
Sbjct: 281 TALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTK 340
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P E TFV VL AC+HA V++G F+ M Y + P + HY
Sbjct: 341 PNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVPRMEHYACVIDLLSRAGMVEEAEK 400
Query: 411 -------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
+H ++ +G K+L++M + G +VL NIY
Sbjct: 401 FMEEKMGGLTAGDANVWGALLNACRIHKNIHVGNRVWKKLVDMGVTDCGTHVLTYNIYRE 460
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G KVR +++ +KK+PGCS+IE D++
Sbjct: 461 AGWDVEANKVRSRIEEVGMKKKPGCSIIEVDNE 493
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/417 (35%), Positives = 218/417 (52%), Gaps = 76/417 (18%)
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
P+ ++F FVLKAC RL + G +H +K G + FV+N+LI ++CG +
Sbjct: 8 PDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEA---- 63
Query: 163 FDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEK 220
AR++FD +P VRD+VSWN MI+GY + E
Sbjct: 64 ---------------------------ARAVFDMLPALVRDVVSWNSMISGYLQSHRYEL 96
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A ++F+ +P R+ V W +MI+GY + K+A+E+F EM+ G D T+ +L+AC
Sbjct: 97 ALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGH 156
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHG-NALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
G L G+ +H L + + L+ NALI MY+KCG I++A+E+F G+ D+ +WS
Sbjct: 157 WGALAQGRWIH--LYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWS 214
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+I GLA +G +++++ +F +M+ + +RP EITF+GVL AC+H G V++G YF M
Sbjct: 215 AVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQ 274
Query: 399 EYNIEPNIRHYGV---------------------------------------HGDVELGR 419
YN+ P I HYG HG++EL
Sbjct: 275 IYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAE 334
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
A K++ + G VLLSN+YAS W V++VRK M IKKQPGCS +E D
Sbjct: 335 FAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEID 391
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 112/243 (46%), Gaps = 17/243 (6%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F +I +T + ++I G AQS +A+ L+ +M+ + T + VL AC
Sbjct: 97 ALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGH 156
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
G +H + E + RN+LI ++ CGD+ A +F G + D+ +WS++
Sbjct: 157 WGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAV 216
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMI----------TGYAKQG--EMEKANELF 225
+G A GE A LF +M + + N + G+ +G +++
Sbjct: 217 ISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIY 276
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
N P + + M+ L G +E + +R++ +PD V SLL AC + G++E
Sbjct: 277 NLTP--GIEHYGCMVD---LLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIE 331
Query: 286 VGK 288
+ +
Sbjct: 332 LAE 334
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 40/193 (20%)
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G PD+ + +L ACA L L G+++H + L + + V NALI ++ CG++E
Sbjct: 5 GTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHL-DVFVQNALISAFSSCGAVEA 63
Query: 323 AIEVF--LGMRDRDVSTWSTLIGG-LAFH-------------------------GFAE-- 352
A VF L RDV +W+++I G L H G+A+
Sbjct: 64 ARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSD 123
Query: 353 ---ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK-KYFKLMRDEYNIEPNIRH 408
E+I +FREMQ T VL AC H G + +G+ + R+ ++ N R+
Sbjct: 124 LFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARN 183
Query: 409 -----YGVHGDVE 416
Y GD++
Sbjct: 184 ALIGMYSKCGDIQ 196
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 32/171 (18%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G I A ++F +T+PD F ++ +I G A + A+ L++QME S I+PN+ TF V
Sbjct: 193 GDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGV 252
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L AC HG FV L YF+A N + +D+
Sbjct: 253 LCACN-----------HGG----------FVDKGLYYFNAMTQIYNLTPGIEHYGCMVDL 291
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVR-DLVSWNVMITGYAKQGEMEKA 221
+ ++L L A +P++ D+V W ++ G +E A
Sbjct: 292 LGRANL---------LVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELA 333
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 223/387 (57%), Gaps = 36/387 (9%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H S L C NL+TLKQI + V G ++ AL +LI + G ++YA +F I
Sbjct: 25 HPSLTLLSTCKNLKTLKQIHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFKSI 84
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+P+ ++N IIRG + S++P+ A+ Y M PN +T+ FVLK+C R+ + G
Sbjct: 85 GKPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHEGK 144
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG+I+K GF+ + FV SLI Y + G
Sbjct: 145 QIHGQILKLGFDNDAFVHTSLITM-------------------------------YVQNG 173
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
EL AR +F+ +RD+VS+ +ITGYA +G +++A ELF+E+P RDVVSWNAMI+GY
Sbjct: 174 ELGNARLVFERSSMRDVVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQ 233
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD--MTSGVAK 303
G ++AL FEEM P+ T+LS+L+ACA G L++G V + + + S + K
Sbjct: 234 SGRFEEALIFFEEMLRANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNI-K 292
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
V+ NALIDMYAKCG +E A+ +F G+++++V +W+ +IGG +E++ +FR+M +
Sbjct: 293 VM--NALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQ 350
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGK 390
V P ++T + +L AC++ G + GK
Sbjct: 351 SNVEPNDVTLLSILPACANLGALGLGK 377
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 130/279 (46%), Gaps = 40/279 (14%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A ++F +I D +N +I G QS +A+ + +M + ++ PN T VL
Sbjct: 204 GFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVL 263
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + MG V I ++G E N V N+LI +A CGDL A LF+G +V+
Sbjct: 264 SACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVI 323
Query: 173 AWSSLTAGYARRGELSMARSLFDEM----------------------------------- 197
+W+ + GY A LF +M
Sbjct: 324 SWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYI 383
Query: 198 --PVRDLVS---WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
+++L + W +I YAK G +E AN++F+ + + + SWNAMISG+ + G A
Sbjct: 384 DKNMKNLANNALWTSLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLA 443
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
+ +F M G PD++T + +L+AC G L++G H
Sbjct: 444 ISLFSRMTKEGLVPDNITFIGVLSACNHAGLLDLGHINH 482
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 10/198 (5%)
Query: 272 LSLLTACADLGDL-EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
L+LL+ C +L L ++ +V T L T L +I Y G + A+ +F +
Sbjct: 28 LTLLSTCKNLKTLKQIHSQVIKTGLHNTHFALSKLIEFCVISPY---GDLSYALLLFKSI 84
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ W+ +I GL+ +I + +M P T+ VL +C+ EGK
Sbjct: 85 GKPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHEGK 144
Query: 391 K-YFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKD--ESGDYVLLSNIYASRG 447
+ + ++++ ++ + + + V+ G L N RL+ R + Y L YASRG
Sbjct: 145 QIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYASRG 204
Query: 448 EWNRVEKVRKLMDDSDIK 465
+++ +L D+ ++
Sbjct: 205 ---FLDQALELFDEIPVR 219
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 165/534 (30%), Positives = 264/534 (49%), Gaps = 87/534 (16%)
Query: 24 IQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
+ A ++GF+S+ +SAL +L S V YA K+F K+ + DT ++NT+I G
Sbjct: 125 LHAHAVVDGFDSNLFVASALVDLYCKFSRV-----AYARKVFDKMPDRDTVLWNTMITGL 179
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
++ D+V ++ M ++ + T + VL A + +G + +K GF F+
Sbjct: 180 VRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDD 239
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
+V LI + C D++TA +LF K D+V++++L +G++ GE A F E+ V
Sbjct: 240 YVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVS 299
Query: 201 -DLVSWNVMI--------------------------------------TGYAKQGEMEKA 221
VS + M+ T Y++ E++ A
Sbjct: 300 GQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLA 359
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
+LF+E ++ V +WNAMISGY G+ + A+ +F+EM + P+ VT+ S+L+ACA L
Sbjct: 360 RQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQL 419
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
G L GK VH L+ + + ALIDMYAKCG+I A ++F +++ TW+T+
Sbjct: 420 GALSFGKSVH-QLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTM 478
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I G HG+ +E++ +F EM L +P+ +TF+ VL ACSHAG V EG + F M ++Y
Sbjct: 479 IFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYR 538
Query: 402 IEPNIRHYG---------------------------------------VHGDVELGRLAN 422
IEP HY +H D L R+A+
Sbjct: 539 IEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVAS 598
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+RL + G YVLLSNIY+ + + VR+ + ++ K PGC+LIE +
Sbjct: 599 ERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVN 652
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 197/436 (45%), Gaps = 53/436 (12%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
K CT L + A + NG+ D + + +L + + GA +A +F + +PD F+
Sbjct: 17 KACT-FPHLAETHAQLIRNGYQHDLATVTKL--TQKLFDVGATRHARALFFSVPKPDIFL 73
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I+G + S + F ++ ++ P+ FT++F + A N+G C+H V
Sbjct: 74 FNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPD---DNLGMCLHAHAV 130
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
GF+ N FV ++L+ + + A +FD D V W+++ G R +
Sbjct: 131 VDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQ 190
Query: 193 LFDEMPVRD--LVSWNV-------------------------------------MITGYA 213
+F +M + L S V +I+ ++
Sbjct: 191 VFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFS 250
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
K +++ A LF + K D+VS+NA+ISG+ G + A++ F E+ G+R TM+
Sbjct: 251 KCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVG 310
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH---GNALIDMYAKCGSIERAIEVFLGM 330
L+ + G L + C + +L AL +Y++ I+ A ++F
Sbjct: 311 LIPVSSPFGHLHLA----CCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDES 366
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
++ V+ W+ +I G A G E +I++F+EM + P +T +L AC+ G + GK
Sbjct: 367 SEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGK 426
Query: 391 KYFKLMRDEYNIEPNI 406
+L++ + N+E NI
Sbjct: 427 SVHQLIKSK-NLEQNI 441
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 111/253 (43%), Gaps = 18/253 (7%)
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM-RSVGERPDDVTMLSL 274
G A LF VPK D+ +N +I G+ + ++ + + ++ PD+ T
Sbjct: 54 GATRHARALFFSVPKPDIFLFNVLIKGFSF-SPDASSISFYTHLLKNTTLSPDNFTYAFA 112
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD 334
++A D +L + H + S + +AL+D+Y K + A +VF M DRD
Sbjct: 113 ISASPD-DNLGMCLHAHAVVDGFDS---NLFVASALVDLYCKFSRVAYARKVFDKMPDRD 168
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY-- 392
W+T+I GL + ++S+ +F++M VR T VL A + +V+ G
Sbjct: 169 TVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQC 228
Query: 393 ----FKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNM-RKDESGDYVLLSNIYASRG 447
D+Y + I + DV+ RL L M RK + Y L + ++ G
Sbjct: 229 LALKLGFHFDDYVLTGLISVFSKCEDVDTARL----LFGMIRKPDLVSYNALISGFSCNG 284
Query: 448 EWN-RVEKVRKLM 459
E V+ R+L+
Sbjct: 285 ETECAVKYFRELL 297
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 170/541 (31%), Positives = 271/541 (50%), Gaps = 107/541 (19%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I+YA K+F ++ E D ++ T+I G + +A L+ ++ K N T++ ++
Sbjct: 15 GEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLF---DRWDAKKNVVTWTAMV 71
Query: 113 ---------KACTRLLY----RNM--------GFCVHG------KIVKYGFEFNRFVRNS 145
K RL Y RN+ G+ +G + + E N N+
Sbjct: 72 NGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNT 131
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
+I CG + A LFD DVV+W+++ AG A+ G + AR+LFD+MPVR++VSW
Sbjct: 132 IITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSW 191
Query: 206 NVMITGYA-------------------------------KQGEMEKANELFNEVPKRDVV 234
N MITGYA + GE+ +A +LF E+ +++V+
Sbjct: 192 NAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVI 251
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCT 293
+W AM++GYV G++++AL +F +M + E +P+ T +++L AC+DL L G+++H
Sbjct: 252 TWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIH-Q 310
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG--MRDRDVSTWSTLIGGLAFHGFA 351
++ T +ALI+MY+KCG + A ++F + RD+ +W+ +I A HG+
Sbjct: 311 MISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYG 370
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
+E+I +F EMQ L V ++TFVG+L ACSH G VEEG KYF + +I+ HY
Sbjct: 371 KEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYAC 430
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
VHG+ ++G+L +++L +
Sbjct: 431 LVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVAEKILKIEPQN 490
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPN 492
+G Y LLSN+YAS G+W VR M D +KKQPGCS IE + +F + KP+
Sbjct: 491 AGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTV---QVFVVGDKPH 547
Query: 493 S 493
S
Sbjct: 548 S 548
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 157/348 (45%), Gaps = 83/348 (23%)
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG-------------------------- 216
R GE+ AR +F+EMP RD+ W MITGY K G
Sbjct: 13 REGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVN 72
Query: 217 ------EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
++++A LF E+P R+VVSWN M+ GY G+ +QAL++F R + ER + V+
Sbjct: 73 GYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLF---RRMPER-NVVS 128
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLD--------MTSGVAK------------------V 304
+++TA G +E +++ + D M +G+AK V
Sbjct: 129 WNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNV 188
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
+ NA+I YA+ ++ A+++F M +RD+ +W+T+I G +G + +F EMQ
Sbjct: 189 VSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEK 248
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY-----------GVHG 413
V IT+ ++ G EE + F M ++PN + G+
Sbjct: 249 NV----ITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTE 304
Query: 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
++ ++ +K + +D + L N+Y+ GE + RK+ DD
Sbjct: 305 GQQIHQMISKTVF---QDSTCVVSALINMYSKCGE---LHTARKMFDD 346
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 144/300 (48%), Gaps = 20/300 (6%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N+ I+ ++GE++ A ++F E+P+RD+ W MI+GY+ CGM ++A ++F+ + +
Sbjct: 5 NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDA---K 61
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
+ VT +++ ++ +++ + + V+ N ++D YA+ G ++A++
Sbjct: 62 KNVVTWTAMVNGYIKFNQVKEAERLFYEM-----PLRNVVSWNTMVDGYARNGLTQQALD 116
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+F M +R+V +W+T+I L G E++ +F +M+ V +++ ++ + G+
Sbjct: 117 LFRRMPERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDV----VSWTTMVAGLAKNGR 172
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
VE+ + F M + N G + L A + M + + + + +
Sbjct: 173 VEDARALFDQMPVRNVVSWNAMITGYAQNRRLDE-ALQLFQRMPERDMPSWNTMITGFIQ 231
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGC-------SLIEADDKAFLQYLFNLKPKPNSGNLDT 498
GE NR EK+ M + ++ L E + F++ L + KPN+G T
Sbjct: 232 NGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVT 291
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 159/512 (31%), Positives = 265/512 (51%), Gaps = 86/512 (16%)
Query: 11 LWKKCTNLR-------TLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
L K C L+ L +Q L GF++D + ++ SV G++ A ++F
Sbjct: 127 LLKACARLQYRPYGAAVLGHVQKL----GFSADVFVVNAGVHFWSV--SGSMVLARRLFD 180
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRLLYR 121
+ D +NT+I G +S P +A+ L+ ++ + +++P++ T + C ++
Sbjct: 181 ESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDL 240
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
+G +H + G + N+++ + CG L
Sbjct: 241 ELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLE------------------------ 276
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
+A+S+F+ + + +VSW MI G+A+ G ME A LF+E+P+RDV WNA+++
Sbjct: 277 -------LAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMA 329
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
GYV K+A+ +F EM+ P+++TM++LL+AC+ LG LE+G VH +D
Sbjct: 330 GYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVH-HYIDRHQLY 388
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
V G +L+DMYAKCG+I++AI +F + D++ TW+ +I GLA HG A+E+I F+ M
Sbjct: 389 LSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRM 448
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
L ++P EITF+GVL AC HAG V+EG+++F LM ++Y++E ++HY
Sbjct: 449 IDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGH 508
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+HG++ LG A +L+ + +SG YVLL+N+
Sbjct: 509 LDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANM 568
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
YA + +KVR +M ++K PGCS IE
Sbjct: 569 YAEANMRKKADKVRVMMRHLGVEKVPGCSCIE 600
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 13/188 (6%)
Query: 229 PKRDVVSWNAMISGYVLCG----MNKQALEMFEEMR-SVGERPDDVTMLSLLTACADLGD 283
P +NA LC +++ L ++ + S RPD +T LL ACA L
Sbjct: 77 PPDSASPYNAAFRALSLCPHRHLVDRHCLPLYRALLCSSSARPDHLTFPFLLKACARLQY 136
Query: 284 LEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
G V H L ++ V V NA + ++ GS+ A +F RDV +W+TL
Sbjct: 137 RPYGAAVLGHVQKLGFSADVFVV---NAGVHFWSVSGSMVLARRLFDESPARDVVSWNTL 193
Query: 342 IGGLAFHGFAEESIAMF-REMQRLK-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
IGG G E++ +F R ++ K VRP E+T +G + C+ G +E GK+ + + D
Sbjct: 194 IGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFV-DS 252
Query: 400 YNIEPNIR 407
+ +R
Sbjct: 253 KGVRCTVR 260
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 161/499 (32%), Positives = 255/499 (51%), Gaps = 85/499 (17%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAIN---YAHKMFVKITEPDTFMYNTII 77
L++I A +G N + I S V I G++N YA+++F + P ++N +I
Sbjct: 25 LREIHAHFLRHGLNQLNQ-----ILSHFVSICGSLNKMAYANRIFKQTQNPTIILFNAMI 79
Query: 78 RGSAQSQNPLDAVF-LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
+G + + P + F L++ M+ I P+++T + +LKAC+ L +G C+H +++ GF
Sbjct: 80 KGYSLN-GPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGF 138
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E +R +I +++CG + A +FD + DV+ W+ + G+ +RG++ M LF +
Sbjct: 139 EGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQ 198
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
M R +VSWN+MI+ A+ +RD +AL +F
Sbjct: 199 MRKRSVVSWNIMISCLAQS--------------RRD-----------------SEALGLF 227
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK--VLHGNALIDMY 314
+M G +PD+ T++++L CA LG ++VGK +H +SG+ + V GNAL+D Y
Sbjct: 228 HDMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHS--YAKSSGLYRDFVAVGNALVDFY 285
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
K G E A VF M ++V +W+TLI GLA +G E + + EM VRP + TFV
Sbjct: 286 NKSGMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFV 345
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
GVL C+HAG E G++ M + + IEP + HYG
Sbjct: 346 GVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIMPG 405
Query: 411 ----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
HGDVEL LA K L+++ SG+YVLLSN+YA W++V
Sbjct: 406 GAPNAALWGSLLSACRTHGDVELAHLAVKELIDLEPWNSGNYVLLSNMYAEEERWDKVAN 465
Query: 455 VRKLMDDSDIKKQPGCSLI 473
VR +M + ++KK PG S+I
Sbjct: 466 VRGMMREKNVKKTPGQSVI 484
>gi|357118977|ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 604
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 238/467 (50%), Gaps = 81/467 (17%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
GA + A ++ I PDT +NT++R +S A L+ QM
Sbjct: 137 GAASSARRLIADIPRPDTVTWNTLLRACLRSGLLPSARRLFDQMP--------------- 181
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
H +V Y NS++ +A GD+ A LFD + DVV
Sbjct: 182 ---------------HRDLVSY---------NSMLSSYAAVGDMAGAGRLFDEMPERDVV 217
Query: 173 AWSSLTAGYARRG-ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
W+++ AGYAR G +++ AR++FD MP RD+VSWN M+ GYA+ G++ A +F+ +P+R
Sbjct: 218 TWNTMLAGYARGGADMASARAVFDAMPERDVVSWNSMLDGYAQAGDVVMAWAMFDGMPRR 277
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGKKV 290
SWN +++ Y ++ L +F+ M +VG P++ T +S+LTAC LGDLE GK V
Sbjct: 278 SAASWNVVLALYARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTACGSLGDLERGKWV 337
Query: 291 HCTLLDMTSG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
H + + V VL AL+ MYAKCG++E A E+F M +R V +W+++I G HG
Sbjct: 338 HGLVRERWDRLVPDVLLLTALLTMYAKCGAMETAREIFDSMSERSVPSWNSMIIGYGLHG 397
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
+E+++ +F EM++ RP E TF+ VL +C+H G V EG F M Y EP H+
Sbjct: 398 QSEKALELFLEMEKSGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYGFEPKAEHF 457
Query: 410 GVHGDV---------------------------------------ELGRLANKRLLNMRK 430
G D+ +LG K+L+ M+
Sbjct: 458 GCMMDLLGRAGLLKDSENLIQNLQGKASPALWGIMMSASQTQNNYKLGEFVGKKLIEMKP 517
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
E G Y+LLSNIYAS G W VEKVR++M ++ +K G SLI + +
Sbjct: 518 AEFGPYLLLSNIYASEGRWGDVEKVREVMKENGAEKYVGLSLIGSSE 564
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 136/285 (47%), Gaps = 44/285 (15%)
Query: 126 CVHGKIVKYG-FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H V+ G + + NSL+ + + G ++A L + D V W++L R
Sbjct: 108 ALHALAVRAGHLPADLRLANSLLSIYLSLGAASSARRLIADIPRPDTVTWNTLLRACLRS 167
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G L AR LFD+MP RDLVS+N M++ YA G+M A LF+E+P+RDVV+WN M++GY
Sbjct: 168 GLLPSARRLFDQMPHRDLVSYNSMLSSYAAVGDMAGAGRLFDEMPERDVVTWNTMLAGYA 227
Query: 245 LCGMN-KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
G + A +F+ M ER
Sbjct: 228 RGGADMASARAVFDAM---PER-------------------------------------D 247
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
V+ N+++D YA+ G + A +F GM R ++W+ ++ A E + +F M
Sbjct: 248 VVSWNSMLDGYAQAGDVVMAWAMFDGMPRRSAASWNVVLALYARRKDWRECLRLFDAMMA 307
Query: 364 LKVR-PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN-IEPNI 406
+ V P E TFV VL AC G +E GK L+R+ ++ + P++
Sbjct: 308 VGVSVPNEKTFVSVLTACGSLGDLERGKWVHGLVRERWDRLVPDV 352
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 177/560 (31%), Positives = 271/560 (48%), Gaps = 133/560 (23%)
Query: 34 NSDSSALRELIYSGSVV--IPGAINYAHKMFVKITEPDT-FMYNTIIRGSA--QSQNPLD 88
+SD ++ R L+++ +++ +P + PD+ F YN R + Q+ +D
Sbjct: 55 HSDPASPRPLLHALAILASLP-------------SPPDSAFPYNAAFRALSLCPHQHLVD 101
Query: 89 --AVFLY-TQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145
+ LY + S +P+ TF F++KAC RL YR+ G V G + K GF + FV N+
Sbjct: 102 RHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNA 161
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF----------- 194
++F + G + A LFD DVV+W++L GY R G A LF
Sbjct: 162 AMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVR 221
Query: 195 -DEMPVRDLVS-----------------------------WNVMITGYAKQGEMEKANE- 223
DE+ V VS N ++ Y K G +E AN
Sbjct: 222 PDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSV 281
Query: 224 ------------------------------LFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
LF+E+P+RDV WNA+++GYV K+A+
Sbjct: 282 FERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAI 341
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
+F EM+ P+++TM++LL+AC+ LG LE+G VH +D V G +L+DM
Sbjct: 342 ALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVH-HYIDRHKLHLSVALGTSLVDM 400
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YAKCG+I++AI VF + ++ TW+++I GLA HG A+E+I F+ M L ++P EITF
Sbjct: 401 YAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITF 460
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------- 410
+GVL AC HAG VE G+++F LM +Y++E ++HY
Sbjct: 461 IGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMP 520
Query: 411 ----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
+HG++ LG A +L+ + +SG YVLL+N+YA + +K
Sbjct: 521 MDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADK 580
Query: 455 VRKLMDDSDIKKQPGCSLIE 474
VR +M ++K PGCS IE
Sbjct: 581 VRVMMRHLGVEKVPGCSCIE 600
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 173/539 (32%), Positives = 262/539 (48%), Gaps = 85/539 (15%)
Query: 4 NRHRSSRLWKKCT---NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
N ++ L +C ++R L +IQA + + S + + + G G + ++
Sbjct: 20 NHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVL 79
Query: 61 MFVK-ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC---SIKPNKFTFSFVLKACT 116
+F ++ P+ F YN +++ +Q N Y + + P+++TF+ VLKAC
Sbjct: 80 IFNHFLSFPNIFAYNALLKAFSQ-HNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACA 138
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI--YFHANCGDLNTASVLFDGDAKMDVVAW 174
L G VH + KYG E N FVRNSL+ YF C
Sbjct: 139 GLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCN-------------------- 178
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+A+ LFDEM VRD+VSWN +I+GY G ++KA +F+ + ++++V
Sbjct: 179 -------------CIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLV 225
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCT 293
SW+ MISGY A+E+F +M+ G P+DVT++S+L+ACA LG L++GK +H
Sbjct: 226 SWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRF 285
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+ V L GNAL DMYAKCG + A VF M +RDV +WS +I GLA +G+A E
Sbjct: 286 IRRNKIEVGLFL-GNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANE 344
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
+ F EM + P +I+F+G+L AC+HAG V++G +YF +M Y I P I HYG
Sbjct: 345 AFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVV 404
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
++ D E G R+L + + SG
Sbjct: 405 DLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSG 464
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
V L+N+YAS G + R M D+ K PGCS IE ++ + ++ P S
Sbjct: 465 SLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVY-EFFMGDSSHPQS 522
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 175/560 (31%), Positives = 256/560 (45%), Gaps = 86/560 (15%)
Query: 2 RTNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYA 58
R N S + CT R L +Q+ V G+ D L+ S + G I A
Sbjct: 202 RPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKL--GDIEMA 259
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
+F K+ D +N I G + A+ L QM+ + PN FT S VLKAC
Sbjct: 260 ATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGA 319
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
N+G +HG +VK +F+ FV L+ +A G L+ A +FD + D++ W++L
Sbjct: 320 GAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALI 379
Query: 179 AGYARRGELSMARSLFDEMP---------------------------------------- 198
+G + G SLF M
Sbjct: 380 SGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIG 439
Query: 199 -VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
+ D N +I Y K G+++ A ++F E D++S M++ C + A+++F
Sbjct: 440 LLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFV 499
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
+M G PD + SLL AC L E GK+VH L+ + V GNAL+ YAKC
Sbjct: 500 QMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQF-TSDVFAGNALVYAYAKC 558
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
GSIE A F G+ +R + +WS +IGGLA HG + ++ +F M V P IT VL
Sbjct: 559 GSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVL 618
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------- 410
AC+HAG V++ KKYF+ M++ + I+ HY
Sbjct: 619 SACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQAN 678
Query: 411 ------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
VH D ELGR+A ++L + ++SG +VLL+N YAS G W+ + KVRKL
Sbjct: 679 AAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKL 738
Query: 459 MDDSDIKKQPGCSLIEADDK 478
M DS++KK+P S +E DK
Sbjct: 739 MKDSNVKKEPAMSWVEIKDK 758
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 195/426 (45%), Gaps = 53/426 (12%)
Query: 14 KCT-NLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKIT---- 66
KC ++R Q+ AL D L+ Y G G ++ A +MF +
Sbjct: 111 KCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGF----GMVDEARRMFDEYVGVGG 166
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
E + +NT+I ++ DA+ ++ +M +PN+F FS V+ ACT G
Sbjct: 167 ERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQ 226
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VHG +V+ G+E + F N+L+ ++ GD+ A+ +F+ DVV+W++ +G G
Sbjct: 227 VHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGH 286
Query: 187 LSMARSLFDEMPVRDLV-----------------SWNV---------------------- 207
A L +M LV ++N+
Sbjct: 287 DHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG 346
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
++ YAK G ++ A ++F+ +P+RD++ WNA+ISG G + + L +F MR G D
Sbjct: 347 LVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLD 406
Query: 268 --DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
T+ S+L + A + ++VH L + ++ N LID Y KCG ++ AI+
Sbjct: 407 VNRTTLASVLKSTASSEAICHTRQVH-ALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIK 465
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VF R D+ + +T++ L+ E++I +F +M R + P +L AC+
Sbjct: 466 VFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSA 525
Query: 386 VEEGKK 391
E+GK+
Sbjct: 526 YEQGKQ 531
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 180/403 (44%), Gaps = 55/403 (13%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A +F +I +P +++++ + + P DA+ + M + N+F VLK
Sbjct: 56 ARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPD 115
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG----DAKMDVVA 173
+ + G VH V + FV N+L+ + G ++ A +FD + + V+
Sbjct: 116 VRF---GAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVS 172
Query: 174 WSSLTAGYARRGELSMARSLFDEMP----------------------------------- 198
W+++ + Y + + A +F EM
Sbjct: 173 WNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVV 232
Query: 199 ----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
+D+ + N ++ Y+K G++E A +F ++P DVVSWNA ISG V G + +ALE
Sbjct: 233 RTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALE 292
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314
+ +M+S G P+ T+ S+L ACA G +G+++H ++ + + + L+DMY
Sbjct: 293 LLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFV-AVGLVDMY 351
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR--LKVRPTEIT 372
AK G ++ A +VF M RD+ W+ LI G + G E +++F M++ L + T
Sbjct: 352 AKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTT 411
Query: 373 FVGVLV------ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
VL A H +V + L+ D + I I Y
Sbjct: 412 LASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSY 454
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 14/223 (6%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N ++T Y++ A +F+E+P VSW+++++ Y GM + AL F MR G
Sbjct: 41 NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGV- 99
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
P + L ++ CA D+ G +VH L T V V NAL+ +Y G ++ A
Sbjct: 100 PCNEFALPVVLKCAP--DVRFGAQVH-ALAVATRLVHDVFVANALVAVYGGFGMVDEARR 156
Query: 326 VF---LGM-RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
+F +G+ +R+ +W+T+I + + ++I +FREM RP E F V+ AC+
Sbjct: 157 MFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACT 216
Query: 382 HAGKVEEGKKYFKLM------RDEYNIEPNIRHYGVHGDVELG 418
+ +E G++ + +D + + Y GD+E+
Sbjct: 217 GSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMA 259
>gi|414884999|tpg|DAA61013.1| TPA: hypothetical protein ZEAMMB73_343744 [Zea mays]
Length = 557
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 237/462 (51%), Gaps = 80/462 (17%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+ A ++ I PDT +NT++R F +L
Sbjct: 135 GSTASARRLLADIPRPDTVTWNTLLR--------------------------SFLRMGLL 168
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A RL + M E + NS++ +A GD+ A LFDG + DVV
Sbjct: 169 PAARRL-FDEMP------------ERDLVTYNSMLSGYAAEGDIANARELFDGMPERDVV 215
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
W+S+ AGYA+RG++ A+ LFD MPVRD+VSWN M+ GYA+ G++E +F+ +P+R
Sbjct: 216 TWNSMLAGYAQRGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMVFDGMPRRS 275
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSV-GERPDDVTMLSLLTACADLGDLEVGKKVH 291
VSWN +++ Y + L +F+ M +V G +P++ T +S+LTAC LGDLE G+ VH
Sbjct: 276 TVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGRWVH 335
Query: 292 CTLLDMTSG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
+ + + VL A++ MYAKCG + A E+F M +R V++W+++I G HG+
Sbjct: 336 HLVHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHGY 395
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
+E+++ +F EM++ +P E TF+ +L +C+H G V EG F M YNIEP H+G
Sbjct: 396 SEKALELFMEMEKNGPQPNETTFICILSSCAHGGLVLEGWWCFDRMVRFYNIEPKAEHFG 455
Query: 411 VHGDV---------------------------------------ELGRLANKRLLNMRKD 431
D+ +LG +L+ M+
Sbjct: 456 CMMDLLGRAGLLRDSENLINNLQAKVSPALWGALISASRTQDSSKLGEFIGTKLIEMKPT 515
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
E YVLLSNIYA+ G W+ VEKVRK+M + ++K G SL+
Sbjct: 516 EFSSYVLLSNIYATEGRWDDVEKVRKVMKEKVVEKDVGMSLV 557
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 135/277 (48%), Gaps = 42/277 (15%)
Query: 126 CVHGKIVKYG-FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H + YG + + NSL+ + + G +A L + D V W++L + R
Sbjct: 106 ALHALGLSYGHLPSDLRLANSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRM 165
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G L AR LFDEMP RDLV++N M++GYA +G++ A ELF+ +P+RDVV+WN+M++GY
Sbjct: 166 GLLPAARRLFDEMPERDLVTYNSMLSGYAAEGDIANARELFDGMPERDVVTWNSMLAGY- 224
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
A GD+E K+ L D+ V V
Sbjct: 225 ----------------------------------AQRGDMESAKR----LFDVMP-VRDV 245
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
+ N+++D YA+ G IE VF GM R +W+ ++ A E + +F M +
Sbjct: 246 VSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAV 305
Query: 365 -KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
+P E TFV VL AC H G +E G+ L+ + +
Sbjct: 306 GGSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESW 342
>gi|357119066|ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 588
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 170/539 (31%), Positives = 269/539 (49%), Gaps = 84/539 (15%)
Query: 18 LRTLK------QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
LR+LK Q A + + G ++ L L+ S + + A + T
Sbjct: 9 LRSLKFRHHLWQTHAQILVRGLAANPRLLPALV-SAAFSVSSPSQAAAVLRAASAAATTV 67
Query: 72 MYNTIIR--GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC--V 127
+NT+I + + P DA+ YT M + PN FTF+F+L+AC R + C +
Sbjct: 68 AHNTLIERLTKLRGRGPEDALTAYTAMRAVEVPPNGFTFTFLLRACE--FSRILPLCRRI 125
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANC---------------------------------- 153
HG+I+K GF + V+N+L+ + C
Sbjct: 126 HGQILKCGFGRDVVVQNALLDVYHKCSNPGYVGDARQVFDEMIEKDVISWNSIVGVYMSS 185
Query: 154 GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYA 213
GD+ A LF+ + +VV+W+++ A +AR G+++ A+++FD MP R+ +SWN+MI+GYA
Sbjct: 186 GDVKGAMELFEVMPERNVVSWNTVVASFARVGDMASAQAVFDRMPTRNAISWNLMISGYA 245
Query: 214 KQGEMEKA-------------------------------NELFNEVPKRDVVSWNAMISG 242
G++E A ELF+++P +++VSWNAMI+G
Sbjct: 246 AGGDVEAARSIFYQTDQKDVVSWTAMISAYAKIGNLDLAKELFDQMPVKNLVSWNAMITG 305
Query: 243 YVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
Y +AL F+ M G RPD+ T++S+++ACA LG E V + + +
Sbjct: 306 YNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSAEYCSWVSSFIRKNNNDL 365
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
L GNALIDM+AKCG + RA +F GM+ R V TW+T+I GL F+G E++ ++ +M
Sbjct: 366 TVAL-GNALIDMFAKCGDVGRAQLIFSGMKSRCVITWTTMISGLGFNGQCREALLVYNDM 424
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----VHGDVEL 417
R V + F+ VL ACSH G + EG F+ M + + I+P + HYG + G EL
Sbjct: 425 CREGVGLDDTVFIAVLAACSHGGFLHEGWSIFRQMVELHGIKPRMEHYGCIVDLLGRAEL 484
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+K+++ + S VL+SN A + W+ V R +M D ++K PG S I+ D
Sbjct: 485 IEYVSKKIVEIEPFSSSYQVLVSNCGALKERWDCVTDARTIMRDFGMEKVPGSSSIQVD 543
>gi|354805142|gb|AER41563.1| CRR4 [Oryza australiensis]
Length = 599
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/449 (34%), Positives = 234/449 (52%), Gaps = 81/449 (18%)
Query: 101 IKPNKFTFSFVLKACTRL-LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC------ 153
+ PN FTF+F+L+AC L L R G CVHG+IV+ GF + FV+N+L+ + C
Sbjct: 105 VPPNGFTFTFLLRACALLGLPRPCG-CVHGQIVRCGFGGDVFVQNALMDVYYRCGGAGGV 163
Query: 154 ----------------------------GDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
GD A LF+ + +VV+W+++ AG+AR G
Sbjct: 164 GAARQVFDQMVEKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARAG 223
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY-- 243
++ AR++FD MP R+ VSWN+MI+GYA G++E A+ +F+ + ++DVVSW AM+S Y
Sbjct: 224 DMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAAHSVFDRMDQKDVVSWTAMVSAYAK 283
Query: 244 ------------------------VLCGMNK-----QALEMFEEMRSVGE-RPDDVTMLS 273
++ G N +AL F+ M G RPD+ T++S
Sbjct: 284 IGDLDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVS 343
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGNALIDMYAKCGSIERAIEVFLG 329
+++ACA LG +E +C + G +K V GNALIDM+AKCG + RA F
Sbjct: 344 VVSACAQLGSVE-----YCNWIGSFIGKSKIHLTVALGNALIDMFAKCGDVGRAQSFFYE 398
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M+ R + TW+T+I G AF+GF E++ ++ M R + + F+ L AC+H G ++EG
Sbjct: 399 MKTRCIITWTTMISGFAFNGFCREALLVYNNMCREGIELDDTVFIAALAACAHGGLLQEG 458
Query: 390 KKYFKLMRDEYNIEPNIRHYG----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
F M +YNI+P + HYG + G EL + ++ + VL+SN A
Sbjct: 459 WSIFNEMVKQYNIQPRMEHYGCMVDLLGRAELIEYVSNKITKLEPFNPSYQVLVSNCSAL 518
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
G W+ V R M + I+K PG SLI+
Sbjct: 519 EGRWDGVIGARTSMRNWGIEKVPGSSLIQ 547
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 166/556 (29%), Positives = 273/556 (49%), Gaps = 88/556 (15%)
Query: 11 LWKKC---TNLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKI 65
L K C +LR K+I + +NGF S+ A+ ++ Y+ ++ A+KMF ++
Sbjct: 181 LLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLV----EEAYKMFDRM 236
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
E D +NTII G AQ+ A+ L +M++ +P+ T +L A + +G
Sbjct: 237 PERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGR 296
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG ++ GFE V +L+ ++ CG + TA ++FD VV+W+S+ GY + G
Sbjct: 297 SIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNG 356
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITG---------------------------------- 211
+ A +F +M + NV + G
Sbjct: 357 DPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMN 416
Query: 212 -----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
Y+K ++ A E+F + + +VSWNAMI GY G +A++ F +M+ +P
Sbjct: 417 SLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKP 476
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D TM+S++ A A+L L K +H L+ T V AL+DMYAKCG++ A ++
Sbjct: 477 DSFTMVSVIPALAELSVLPQAKWIH-GLVIRTCLDKNVFVATALVDMYAKCGAVHTARKL 535
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F M +R V+TW+ +I G HG + ++ +F +M++ ++P E+TF+ VL ACSH+G V
Sbjct: 536 FDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLV 595
Query: 387 EEGKKYFKLMRDEYNIEPNIRHYG------------------------------------ 410
EEG +YF M+ +Y +EP + HYG
Sbjct: 596 EEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLG 655
Query: 411 ---VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
+H +VELG A R+ ++ D+ G +VLL+NIYA+ W++V +VR M+ I+K
Sbjct: 656 ACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKT 715
Query: 468 PGCSLIEADDKAFLQY 483
PG S++E ++ Y
Sbjct: 716 PGWSVVELQNEVHTFY 731
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 207/425 (48%), Gaps = 42/425 (9%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
+H S+ L + CT+++ L Q L+ NG S+ +L+ G+++ A ++F
Sbjct: 77 KHPSAILLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLV--SLFCKFGSLHEAARVFQP 134
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
I + +Y+T+++G A++ + DAV + +M ++P + F+++LK C G
Sbjct: 135 IEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKG 194
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H +++ GF N F ++ +A C + A +FD + D+V W+++ +GYA+
Sbjct: 195 KEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQN 254
Query: 185 GELSMARSLFDEM-----------------PVRDLVSWNV-------------------- 207
G A L M V D+ S +
Sbjct: 255 GFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVS 314
Query: 208 --MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
++ Y+K G + A +F+ + + VVSWN+MI GYV G A+E+F++M
Sbjct: 315 TALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVE 374
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
+VT++ L ACADLGD+E G+ VH LLD + V N+LI MY+KC ++ A E
Sbjct: 375 MTNVTVMGALHACADLGDVEQGRFVH-KLLDQLELGSDVSVMNSLISMYSKCKRVDIAAE 433
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+F ++ + + +W+ +I G A +G E+I F +MQ ++P T V V+ A +
Sbjct: 434 IFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSV 493
Query: 386 VEEGK 390
+ + K
Sbjct: 494 LPQAK 498
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 256/499 (51%), Gaps = 73/499 (14%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
G++ G I A ++F ++ DT +N+II G ++ ++ L+ M N
Sbjct: 55 GNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPT----KNVV 110
Query: 107 TFSFVLKACTR-------------LLYRNM--------GFCVHGKIVKYGFEFNRFVRNS 145
+++ ++ C + RN G + ++ + F R +
Sbjct: 111 SWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRN 170
Query: 146 LIYF------HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV 199
+I + +A G++ A LF+ + +VV+W+ + +GY G+ A +LF++MP
Sbjct: 171 VISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPD 230
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
+++V+ MITGY K+G+ +KA LF+++P RD+ SWNAMI+GY G ++AL++ +M
Sbjct: 231 KNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQM 290
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCG 318
+G +PD T++S+LTAC+ L L+ G+K H +L + SG +++ NALI MY KCG
Sbjct: 291 LKMGMQPDHSTLISVLTACSSLASLQEGRKTH--VLVLKSGYESRISICNALITMYCKCG 348
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
SI + F + DV +W+ +I A HGF + ++A F EM+ +V P ITF+ +L
Sbjct: 349 SILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLS 408
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------- 410
AC HAGKV E +F M + Y I P H+
Sbjct: 409 ACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADC 468
Query: 411 -----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459
VH +V+LG LA K+++ + SG YV+LSNIYA+ G W V +VR LM
Sbjct: 469 GIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLM 528
Query: 460 DDSDIKKQPGCSLIEADDK 478
+ +KKQP S +E D+K
Sbjct: 529 REQGVKKQPAYSWMEIDNK 547
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 132/279 (47%), Gaps = 61/279 (21%)
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG------------- 216
DV A++ AR G + AR LFDEMP RD VSWN +ITGY K G
Sbjct: 46 DVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMP 105
Query: 217 ------------------EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
+++A + F +P+R+ SWNAMISG V ++A +FEE
Sbjct: 106 TKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEE 165
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKV-HC-------TLLDMTSGVAK------- 303
M R + ++ +++ A +G++E + + +C + M SG +
Sbjct: 166 M----PRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEA 221
Query: 304 -----------VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
++ A+I Y K G ++A +F + RD+++W+ +I G A +G E
Sbjct: 222 ENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGE 281
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
E++ + +M ++ ++P T + VL ACS ++EG+K
Sbjct: 282 EALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRK 320
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 117/258 (45%), Gaps = 36/258 (13%)
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
+D+ ++NV I A+ G + A +LF+E+P RD VSWN++I+GY G ++ +F
Sbjct: 44 TQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGL 103
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLE--------VGKKVHCTLLDMTSGVAK------- 303
M + + V+ S++ C + ++ + ++ + M SG+ +
Sbjct: 104 MPT----KNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEA 159
Query: 304 -----------VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
V+ A++D YAK G IE+A +F M ++V +W+ +I G +G +
Sbjct: 160 SRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFD 219
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM--RDEYNIEPNIRHYG 410
E+ +F +M + + ++ GK ++ K F + RD + I Y
Sbjct: 220 EAENLFEQMPDKNI----VAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYA 275
Query: 411 VHGDVELGRLANKRLLNM 428
+G E + ++L M
Sbjct: 276 QNGSGEEALKLHSQMLKM 293
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 167/530 (31%), Positives = 254/530 (47%), Gaps = 79/530 (14%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
R L C +++ +KQ A + S + +L+ + +++YAHK+F +I
Sbjct: 18 RLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLL---KLAACASLSYAHKLFDQIP 74
Query: 67 EPDTFMYNTIIRGSAQSQNPL--DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+PD F+YNT+I+ + S + + + + + PN+++F F AC L G
Sbjct: 75 QPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEG 134
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
V VK G E N FV N+LI Y +
Sbjct: 135 EQVRIHAVKVGLENNVFVVNALI-------------------------------GMYGKW 163
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G + ++ +F RDL SWN +I Y G M A ELF+ + +RDVVSW+ +I+GYV
Sbjct: 164 GLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYV 223
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G +AL+ F +M +G +P++ T++S L AC++L L+ GK +H + + +
Sbjct: 224 QVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNER 283
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
L ++IDMYAKCG IE A VF + + V W+ +IGG A HG E+I +F +M+
Sbjct: 284 LLA-SIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKV 342
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
K+ P ++TF+ +L ACSH VEEGK YF+LM +Y I P I HYG
Sbjct: 343 EKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLK 402
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
++ D+E G + + M + G +VLLSNIY+
Sbjct: 403 EAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYS 462
Query: 445 SRGEWNRVEKVRKLMDDS-DIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
+ G WN +R+ + S D KK PGCS IE F Q+L + P S
Sbjct: 463 TSGRWNEARILREKNEISRDRKKIPGCSSIELKG-TFHQFLVGDQSHPQS 511
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 162/519 (31%), Positives = 255/519 (49%), Gaps = 80/519 (15%)
Query: 1 NRTNRHRSSRLWKKCTNLRT---LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINY 57
N++ + S++ N +T L QI A +G + + L + + + I Y
Sbjct: 2 NKSLQKIESKILHLLHNTKTQTHLPQIHAHFLRHGLHHSNQILSHFVSVCTSL--HQIPY 59
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS--IKPNKFTFSFVLKAC 115
A +F P+ ++N+II+ + S P F + + K + I P+ FTF +LKA
Sbjct: 60 ATTIFNHTHHPNILLFNSIIKAHS-SFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKAT 118
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+ L ++G C+H + GF + V L+ ++NCG + A+
Sbjct: 119 SYLRDYDLGQCLHAHVTALGFYRHSPVEIGLLEVYSNCGKMEDAN--------------- 163
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
+FDEM R++V WN+MI G+ K G++E +LF + +R VVS
Sbjct: 164 ----------------KVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVS 207
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WN MIS + +A +F EM G PDD T++++L CA LGD++ G+ +H +
Sbjct: 208 WNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIH-SYA 266
Query: 296 DMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
D + KV+ GN+L+D Y KCG++E A +VF M ++V +W+ +I GL +G E
Sbjct: 267 DGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGELG 326
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
+ +F +M R V P++ TFVGVL C+HAG V++G++ F M ++ + P + HYG
Sbjct: 327 VELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVD 386
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
HGD E+ +A K L+ + SG+
Sbjct: 387 LLGRCGHVKEAYDLIRNMPLMPNAALWGALLSACRTHGDREVAEIAAKELVRLEPGNSGN 446
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
YVLLSN+YA +WN VEKVR LM IKK PG S ++
Sbjct: 447 YVLLSNVYAEERKWNEVEKVRVLMQGVGIKKNPGQSALQ 485
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 224/415 (53%), Gaps = 41/415 (9%)
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
P+ + SF L +CTRL + +H V+ G + ++ N+ + + D+ +A L
Sbjct: 74 PDHLSISFSLHSCTRLPCHPIASLLHSFAVRLGHAGDVYIVNAAVSAYFTAADVASAERL 133
Query: 163 FDGDAK--MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK 220
F +K DVV W+++ AG+AR G++ AR FD MP R++VSWN M+ YA G + +
Sbjct: 134 FSDTSKDVADVVTWTTMVAGHARAGDVERARWFFDAMPERNVVSWNAMLGAYASAGMLSE 193
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A +LF+ + R+ +W++M++G V ++AL +F +M + G P++ ++S+++ACA
Sbjct: 194 ARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSDMVARGVVPNESILVSVISACAQ 253
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
L LE G VH + G V+ A++DMY KCG I AI VF M R++ +W++
Sbjct: 254 LRSLEHGVWVHAYVKRELHGSMSVILATAIVDMYGKCGCIHNAIRVFAAMPVRNIYSWNS 313
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
+I GLA +G +++++F +MQ V+P +ITF+G+L ACSH+G V+EG+ F M +++
Sbjct: 314 MITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGACSHSGLVDEGRWLFNRMVNDF 373
Query: 401 NIEPNIRHYG---------------------------------------VHGDVELGRLA 421
I+P HYG +HG+VELG
Sbjct: 374 GIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNMPVEPHPGLWGALAGACNIHGEVELGEEI 433
Query: 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
K+L+ + Y+LLSNIY + W + VR+L+ + + K G +++ D
Sbjct: 434 AKKLIELEPRHGSRYILLSNIYGTSSRWEDMATVRRLIKERKVSKGTGNAVVGND 488
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 30/143 (20%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP----------GAINYAHKMF 62
C LR+L+ G + REL S SV++ G I+ A ++F
Sbjct: 249 SACAQLRSLEH--------GVWVHAYVKRELHGSMSVILATAIVDMYGKCGCIHNAIRVF 300
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
+ + + +N++I G A + + A+ L+ +M+ ++PN TF +L AC+
Sbjct: 301 AAMPVRNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGACS------ 354
Query: 123 MGFCVHGKIVKYG-FEFNRFVRN 144
H +V G + FNR V +
Sbjct: 355 -----HSGLVDEGRWLFNRMVND 372
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 149/465 (32%), Positives = 237/465 (50%), Gaps = 67/465 (14%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A F +I ++N +I G QS +A L+ +M I P++FTF+ +L
Sbjct: 244 GDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLL 303
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC N GF +HGK V +F+R + +N A V
Sbjct: 304 SACA-----NAGFFLHGKSVH-----GQFIRLQPDFVPEAALPVNNALVTL--------- 344
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
Y++ G++++A +FD M ++D+VSWN +++GY + G ++ A +F E+P +
Sbjct: 345 --------YSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKS 396
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+SW M+SGYV G+ + AL++F +MRS +P D T + AC +LG L+ GK++H
Sbjct: 397 ELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHA 456
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
L+ + GNAL+ MYA+CG+++ A VFL M + D +W+ +I L HG
Sbjct: 457 HLVQCGFEASNSA-GNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGR 515
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
E++ +F +M + P I+F+ +L AC+HAG V++G +YF+ M ++ I P HY
Sbjct: 516 EALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARL 575
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
++GD+ELG A +L M +
Sbjct: 576 IDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHD 635
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G Y+LLSN Y++ G W +VRKLM D +KK+PGCS IE +K
Sbjct: 636 GTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNK 680
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 164/367 (44%), Gaps = 66/367 (17%)
Query: 63 VKITEPDTFMYNTIIRGSAQSQ--NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
V + DT ++N +I A++ P +VF S++P+ ++F+ +L A ++
Sbjct: 115 VPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHD 174
Query: 121 RNMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
+ C +H + K G V N+LI + C DA
Sbjct: 175 LAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKC------------DAP---------- 212
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
G AR + DEMP +D ++W ++ G+ ++G++ A F E+ V WNA
Sbjct: 213 ------GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNA 266
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MISGYV GM +A E+F M S PD+ T SLL+ACA+ G GK VH + +
Sbjct: 267 MISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQ 326
Query: 299 SGV---AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST--------------- 340
A + NAL+ +Y+K G I A ++F M +DV +W+T
Sbjct: 327 PDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAA 386
Query: 341 ----------------LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
++ G G AE+++ +F +M+ V+P + T+ G + AC G
Sbjct: 387 RIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELG 446
Query: 385 KVEEGKK 391
++ GK+
Sbjct: 447 ALKHGKQ 453
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/471 (32%), Positives = 241/471 (51%), Gaps = 60/471 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F TE D +N ++ G Q +A L+ +M P + S+ +
Sbjct: 176 GRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRM------PGRDVVSWNI 229
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNR------FVRNSLIYFHANCGDLNTASVLFDGD 166
G+ G +V+ F+ F +++ +A G L A +FD
Sbjct: 230 MVS--------GYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 281
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+ + V+W+++ A Y +R + A+ LF+ MP R++ SWN M+TGYA+ G +E+A +F+
Sbjct: 282 PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+P++D VSW AM++ Y G +++ L++F EM GE + +L+ CAD+ LE
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G ++H L+ GV + GNAL+ MY KCG++E A F M +RDV +W+T+I G A
Sbjct: 402 GMQLHGRLIRAGYGVGCFV-GNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYA 460
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HGF +E++ +F M+ +P +IT VGVL ACSH+G VE+G YF M ++ +
Sbjct: 461 RHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 520
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HY +H + ELGR A +++
Sbjct: 521 EHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE 580
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + +G YVLLSNIYAS G+W K+R +M++ +KK PG S IE +K
Sbjct: 581 LEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNK 631
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 174/352 (49%), Gaps = 20/352 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFTFSFV 111
G + A +F I PD + YNT++ A S + DA L+ +M + S+ N S
Sbjct: 83 GRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHA 142
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L V + +VRN G + A LF+ + D
Sbjct: 143 NHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN---------GRVEEARGLFNSRTEWDA 193
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
++W++L +GY + G++S AR LFD MP RD+VSWN+M++GYA++G+M +A LF+ P R
Sbjct: 194 ISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR 253
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
DV +W A++SGY GM ++A +F+ M ER + V+ +++ A ++ K+
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAM---PER-NAVSWNAMVAAYIQRRMMDEAKE-- 307
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
L +M V N ++ YA+ G +E A VF M +D +W+ ++ + G +
Sbjct: 308 --LFNMMP-CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNI 402
EE++ +F EM R F VL C+ +E G + + +L+R Y +
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV 416
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 126/253 (49%), Gaps = 13/253 (5%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N+++ ++ G L A+ LF + D ++++L A L+ AR LFDEMPVRD V
Sbjct: 73 NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSV 132
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
++NVMI+ +A G + A F+ P++D VSWN M++ YV G ++A +F
Sbjct: 133 TYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW- 191
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
D ++ +L++ G + ++ L D G V+ N ++ YA+ G + A
Sbjct: 192 ---DAISWNALMSGYVQWGKMSEARE----LFDRMPG-RDVVSWNIMVSGYARRGDMVEA 243
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+F RDV TW+ ++ G A +G EE+ +F M +++ ++ A
Sbjct: 244 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA----VSWNAMVAAYIQR 299
Query: 384 GKVEEGKKYFKLM 396
++E K+ F +M
Sbjct: 300 RMMDEAKELFNMM 312
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 13/262 (4%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N I H G + A LF + ++++ AGY+ G L +A SLF +P D
Sbjct: 42 NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNY 101
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
S+N ++ A + A LF+E+P RD V++N MIS + G+ A F+ +
Sbjct: 102 SYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD----LA 157
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
D V+ +L A G +E + + + + + + NAL+ Y + G + A
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDA-----ISWNALMSGYVQWGKMSEA 212
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
E+F M RDV +W+ ++ G A G E+ +F V T+ V+ +
Sbjct: 213 RELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQN 268
Query: 384 GKVEEGKKYFKLMRDEYNIEPN 405
G +EE ++ F M + + N
Sbjct: 269 GMLEEARRVFDAMPERNAVSWN 290
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/471 (32%), Positives = 241/471 (51%), Gaps = 60/471 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F TE D +N ++ G Q +A L+ +M P + S+ +
Sbjct: 176 GRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRM------PGRDVVSWNI 229
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNR------FVRNSLIYFHANCGDLNTASVLFDGD 166
G+ G +V+ F+ F +++ +A G L A +FD
Sbjct: 230 MVS--------GYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 281
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+ + V+W+++ A Y +R + A+ LF+ MP R++ SWN M+TGYA+ G +E+A +F+
Sbjct: 282 PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+P++D VSW AM++ Y G +++ L++F EM GE + +L+ CAD+ LE
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G ++H L+ GV + GNAL+ MY KCG++E A F M +RDV +W+T+I G A
Sbjct: 402 GMQLHGRLIRAGYGVGCFV-GNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYA 460
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HGF +E++ +F M+ +P +IT VGVL ACSH+G VE+G YF M ++ +
Sbjct: 461 RHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 520
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HY +H + ELGR A +++
Sbjct: 521 EHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE 580
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + +G YVLLSNIYAS G+W K+R +M++ +KK PG S IE +K
Sbjct: 581 LEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNK 631
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 175/352 (49%), Gaps = 20/352 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFTFSFV 111
G + A +F I PD + YNT++ A S + DA L+ +M + S+ N S
Sbjct: 83 GRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHA 142
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L V + +VRN G + A LF+ + DV
Sbjct: 143 NHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN---------GRVEEARGLFNSRTEWDV 193
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
++W++L +GY + G++S AR LFD MP RD+VSWN+M++GYA++G+M +A LF+ P R
Sbjct: 194 ISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR 253
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
DV +W A++SGY GM ++A +F+ M ER + V+ +++ A ++ K+
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAM---PER-NAVSWNAMVAAYIQRRMMDEAKE-- 307
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
L +M V N ++ YA+ G +E A VF M +D +W+ ++ + G +
Sbjct: 308 --LFNMMP-CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNI 402
EE++ +F EM R F VL C+ +E G + + +L+R Y +
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV 416
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 126/253 (49%), Gaps = 13/253 (5%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N+++ ++ G L A+ LF + D ++++L A L+ AR LFDEMPVRD V
Sbjct: 73 NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSV 132
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
++NVMI+ +A G + A F+ P++D VSWN M++ YV G ++A +F
Sbjct: 133 TYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW- 191
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
D ++ +L++ G + ++ L D G V+ N ++ YA+ G + A
Sbjct: 192 ---DVISWNALMSGYVQWGKMSEARE----LFDRMPG-RDVVSWNIMVSGYARRGDMVEA 243
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+F RDV TW+ ++ G A +G EE+ +F M +++ ++ A
Sbjct: 244 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA----VSWNAMVAAYIQR 299
Query: 384 GKVEEGKKYFKLM 396
++E K+ F +M
Sbjct: 300 RMMDEAKELFNMM 312
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 117/262 (44%), Gaps = 13/262 (4%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N I H G + A LF + ++++ AGY+ G L +A SLF +P D
Sbjct: 42 NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNY 101
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
S+N ++ A + A LF+E+P RD V++N MIS + G+ A F+ +
Sbjct: 102 SYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD----LA 157
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
D V+ +L A G +E + + + + V+ NAL+ Y + G + A
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW-----DVISWNALMSGYVQWGKMSEA 212
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
E+F M RDV +W+ ++ G A G E+ +F V T+ V+ +
Sbjct: 213 RELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQN 268
Query: 384 GKVEEGKKYFKLMRDEYNIEPN 405
G +EE ++ F M + + N
Sbjct: 269 GMLEEARRVFDAMPERNAVSWN 290
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/471 (32%), Positives = 241/471 (51%), Gaps = 60/471 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F TE D +N ++ G Q +A L+ +M P + S+ +
Sbjct: 176 GRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRM------PGRDVVSWNI 229
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNR------FVRNSLIYFHANCGDLNTASVLFDGD 166
G+ G +V+ F+ F +++ +A G L A +FD
Sbjct: 230 MVS--------GYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 281
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+ + V+W+++ A Y +R + A+ LF+ MP R++ SWN M+TGYA+ G +E+A +F+
Sbjct: 282 PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+P++D VSW AM++ Y G +++ L++F EM GE + +L+ CAD+ LE
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G ++H L+ GV + GNAL+ MY KCG++E A F M +RDV +W+T+I G A
Sbjct: 402 GMQLHGRLIRAGYGVGCFV-GNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYA 460
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HGF +E++ +F M+ +P +IT VGVL ACSH+G VE+G YF M ++ +
Sbjct: 461 RHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 520
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HY +H + ELGR A +++
Sbjct: 521 EHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE 580
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + +G YVLLSNIYAS G+W K+R +M++ +KK PG S IE +K
Sbjct: 581 LEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNK 631
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 175/352 (49%), Gaps = 20/352 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFTFSFV 111
G + A +F I PD + YNT++ A S + DA L+ +M + S+ N S
Sbjct: 83 GRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHA 142
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L V + +VRN G + A LF+ + DV
Sbjct: 143 NHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN---------GRVEEARGLFNSRTEWDV 193
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
++W++L +GY + G++S AR LFD MP RD+VSWN+M++GYA++G+M +A LF+ P R
Sbjct: 194 ISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR 253
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
DV +W A++SGY GM ++A +F+ M ER + V+ +++ A ++ K+
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAM---PER-NAVSWNAMVAAYIQRRMMDEAKE-- 307
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
L +M V N ++ YA+ G +E A VF M +D +W+ ++ + G +
Sbjct: 308 --LFNMMP-CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNI 402
EE++ +F EM R F VL C+ +E G + + +L+R Y +
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV 416
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 126/253 (49%), Gaps = 13/253 (5%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N+++ ++ G L A+ LF + D ++++L A L+ AR LFDEMPVRD V
Sbjct: 73 NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSV 132
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
++NVMI+ +A G + A F+ P++D VSWN M++ YV G ++A +F
Sbjct: 133 TYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW- 191
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
D ++ +L++ G + ++ L D G V+ N ++ YA+ G + A
Sbjct: 192 ---DVISWNALMSGYVQWGKMSEARE----LFDRMPG-RDVVSWNIMVSGYARRGDMVEA 243
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+F RDV TW+ ++ G A +G EE+ +F M +++ ++ A
Sbjct: 244 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA----VSWNAMVAAYIQR 299
Query: 384 GKVEEGKKYFKLM 396
++E K+ F +M
Sbjct: 300 RMMDEAKELFNMM 312
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 117/262 (44%), Gaps = 13/262 (4%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N I H G + A LF + ++++ AGY+ G L +A SLF +P D
Sbjct: 42 NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNY 101
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
S+N ++ A + A LF+E+P RD V++N MIS + G+ A F+ +
Sbjct: 102 SYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD----LA 157
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
D V+ +L A G +E + + + + V+ NAL+ Y + G + A
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW-----DVISWNALMSGYVQWGKMSEA 212
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
E+F M RDV +W+ ++ G A G E+ +F V T+ V+ +
Sbjct: 213 RELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQN 268
Query: 384 GKVEEGKKYFKLMRDEYNIEPN 405
G +EE ++ F M + + N
Sbjct: 269 GMLEEARRVFDAMPERNAVSWN 290
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 174/553 (31%), Positives = 272/553 (49%), Gaps = 100/553 (18%)
Query: 11 LWKKC---TNLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKI 65
L K C ++L+ K+I V +GF+ + A+ ++ Y+ IN A+ MF ++
Sbjct: 36 LLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKC----RQINDAYNMFDRM 91
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC--TRLLYRNM 123
E D +NT+I G AQ+ A+ L +M + +P+ T +L A TRLL +
Sbjct: 92 PERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLL--RI 149
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G VHG +++ GFE V +L+ ++ CG ++ A V+FDG VV+W+S+ GY +
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQ 209
Query: 184 RGELSMARSLFDEM------PVR---------------------------------DLVS 204
G+ A +F +M P D+
Sbjct: 210 SGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSV 269
Query: 205 WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
N +I+ Y+K ++ A ++F + + +VSWNAMI GY G +AL F EM+S
Sbjct: 270 MNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNI 329
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKVLHGNALIDMYAKCGSI 320
+PD TM+S++ A A+L K +H + LD V AL+DMYAKCG+I
Sbjct: 330 KPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLD-----KNVFVMTALVDMYAKCGAI 384
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A ++F M R V TW+ +I G HG + S+ +F+EM++ ++P +ITF+ L AC
Sbjct: 385 HTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSAC 444
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
SH+G VEEG +F+ M+ +Y IEP + HYG
Sbjct: 445 SHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITV 504
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+H +V+LG A + + D+ G +VLL+NIYA+ W +V KVR +M+
Sbjct: 505 YGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEK 564
Query: 462 SDIKKQPGCSLIE 474
S ++K PGCSL+E
Sbjct: 565 SGLQKTPGCSLVE 577
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 199/431 (46%), Gaps = 80/431 (18%)
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+++G A+S + A+ +++M+ S++P + F+++LK C G +HG ++ G
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF- 194
F +N F ++ +A C +N A +FD + D+V W+++ +GYA+ G +A L
Sbjct: 61 FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120
Query: 195 ---------DEMPVRDLVSW-----------------------------NVMITGYAKQG 216
D + + ++ ++ Y+K G
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
+ A +F+ + R VVSWN+MI GYV G + A+ +F++M G +P +VT++ L
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
ACADLGDLE GK VH L+D + V N+LI MY+KC ++ A ++F +R++ +
Sbjct: 241 ACADLGDLERGKFVH-KLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH-------------- 382
+W+ +I G A +G E++ F EMQ ++P T V V+ A +
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359
Query: 383 ---------------------AGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGR 419
G + +K F +M + I N I YG HG LG+
Sbjct: 360 IRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHG---LGK 416
Query: 420 LANKRLLNMRK 430
+ + M+K
Sbjct: 417 TSVELFKEMKK 427
>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 576
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 165/568 (29%), Positives = 268/568 (47%), Gaps = 108/568 (19%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAI-NYAHKMFVKITE 67
+ L KKC+ ++ KQI A + N I + I NY + +
Sbjct: 7 TTLMKKCSTVKHAKQIHAQIITNNLTHLEPIFIHRILLCDITNYKTISNYILSILHHLRN 66
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
PD+F + +IR +Q ++AV LY QM + + P+ S +LK+C R+ G +
Sbjct: 67 PDSFSWGCVIRFFSQKGQFVEAVSLYVQMRRIGLCPSSHAVSSILKSCARVEDDLCGLLI 126
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG + K+GF+ +V+ +L+ + GD+ TA +FD +VV+W+SL +GY + G L
Sbjct: 127 HGHVHKFGFDACVYVQTALLDLYCKIGDVVTARKVFDEMPDKNVVSWNSLLSGYIKGGNL 186
Query: 188 SMARSLFDEMPVRDLVS-------------------------------WNVMITGYAKQG 216
+ FDE+P++D++S WN MITGY G
Sbjct: 187 DEGQRFFDEIPLKDVISWNCMVSGYAKAGKMDRACYLFQQMPERNFASWNTMITGYVDCG 246
Query: 217 EMEKANELFNEVPKR-------------------------------DVVSWNAMISGYVL 245
+ +A ELF+ +P+R D++S+NAMI+ Y
Sbjct: 247 SIVEARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLLSYNAMIACYAQ 306
Query: 246 CGMNKQALEMFEEMRSVGE--RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
K+AL++F M PD +T+ S+++AC+ LG+LE + + + + G+
Sbjct: 307 SSKPKEALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEHWRWIESQINNF--GIVL 364
Query: 304 VLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
H ALID+YAKCGSI++A E+F G+R RDV +S +I G +G A +++ +F M
Sbjct: 365 DDHLATALIDLYAKCGSIDKAYELFHGLRKRDVVAYSAMIYGCGINGRASDAVELFERMA 424
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
+ P +T+ G+L A +HAG EEG + F M+D I P++ HYG+
Sbjct: 425 GECIIPNLVTYTGILTAYNHAGLAEEGYRCFISMKDN-GIVPSVDHYGIMVDLLGRAGWL 483
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H +++LG +A + + + + +G Y LLS IY
Sbjct: 484 DEAYKLIMKMPMQPNVGVWGALLLACRLHDNLKLGEIAVQHCIKLESETAGYYSLLSGIY 543
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
A+ G+WN +K+ ++ I K PGCS
Sbjct: 544 ATVGKWNDAKKLTTGVEGKKIIKIPGCS 571
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 144/308 (46%), Gaps = 26/308 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK--CSIKPNKFTFSF 110
G ++ A ++F ++ + D YN +I AQS P +A+ L+ M K S+ P+K T +
Sbjct: 277 GDVHSARELFDQMDDKDLLSYNAMIACYAQSSKPKEALDLFNVMLKPDSSLHPDKMTLAS 336
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
V+ AC++L + +I +G + + +LI +A CG ++ A LF G K D
Sbjct: 337 VISACSQLGNLEHWRWIESQINNFGIVLDDHLATALIDLYAKCGSIDKAYELFHGLRKRD 396
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFN 226
VVA+S++ G G S A LF+ M + +LV++ ++T Y G E+ F
Sbjct: 397 VVAYSAMIYGCGINGRASDAVELFERMAGECIIPNLVTYTGILTAYNHAGLAEEGYRCFI 456
Query: 227 EVPKRDVVS----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ +V + M+ L G E ++ + + +P+ +LL AC
Sbjct: 457 SMKDNGIVPSVDHYGIMVD---LLGRAGWLDEAYKLIMKMPMQPNVGVWGALLLACRLHD 513
Query: 283 DLEVGKKV--HCTLLDM-TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV---- 335
+L++G+ HC L+ T+G +L G +YA G A ++ G+ + +
Sbjct: 514 NLKLGEIAVQHCIKLESETAGYYSLLSG-----IYATVGKWNDAKKLTTGVEGKKIIKIP 568
Query: 336 -STWSTLI 342
+W+ L+
Sbjct: 569 GCSWTQLV 576
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 173/558 (31%), Positives = 274/558 (49%), Gaps = 89/558 (15%)
Query: 4 NRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYA 58
+R+ S + C+ L L KQI A V G D S + LI Y+ +
Sbjct: 229 DRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKC----NRVKAG 284
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
K+F ++ + + T+I G Q+ +A+ L+ +M + KP+ F + VL +C
Sbjct: 285 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSR 344
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
G VH +K E + FV+N LI +A L A +FD A+ +V++++++
Sbjct: 345 EALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMI 404
Query: 179 AGYARRGELSMARSLFDEMPVR-------------------------------------- 200
GY+ + +LS A LF EM VR
Sbjct: 405 EGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVS 464
Query: 201 -DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
DL + + +I Y+K ++ A +F E+ ++D+V WNAM GY N++AL+++ +
Sbjct: 465 LDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTL 524
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
+ ++P++ T +L+TA ++L L G++ H L+ M + NAL+DMYAKCGS
Sbjct: 525 QFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFV-TNALVDMYAKCGS 583
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
IE A ++F RDV W+++I A HG AEE++ MFREM + ++P +TFV VL A
Sbjct: 584 IEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSA 643
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSHAG+VE+G +F M + I+P HY
Sbjct: 644 CSHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAI 702
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+ G+VELG+ A + ++ +SG Y+LLSNI+AS+G W V+KVR MD
Sbjct: 703 VWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMD 762
Query: 461 DSDIKKQPGCSLIEADDK 478
S++ K+PG S IE ++K
Sbjct: 763 SSEVVKEPGRSWIEVNNK 780
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 203/431 (47%), Gaps = 63/431 (14%)
Query: 13 KKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVK 64
+ CT L ++ Q+ V +GF+ D +Y G+ +I G I A +F +
Sbjct: 137 RACTQLGVVEKGAQLHGFVVRSGFDQD-------VYVGTSLIDFYSKNGNIEEARLVFDQ 189
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
++E + TII G + ++ L+ QM + ++ P+++ S VL AC+ L + G
Sbjct: 190 LSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGG 249
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H +++ G E + V N LI F+ C + LFD ++++W+++ +GY +
Sbjct: 250 KQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQN 309
Query: 185 GELSMARSLFDEMPVRDLVSW--------------------------------------- 205
A LF EM + + W
Sbjct: 310 SFDWEAMKLFGEM---NRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDE 366
Query: 206 ---NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
N +I YAK + A ++F+ + +++V+S+NAMI GY +ALE+F EMR
Sbjct: 367 FVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVR 426
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIE 321
P +T +SLL A L LE+ K++H ++ GV+ + G+ALID+Y+KC ++
Sbjct: 427 LFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKF--GVSLDLFAGSALIDVYSKCSYVK 484
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A VF M ++D+ W+ + G H EE++ ++ +Q + +P E TF ++ A S
Sbjct: 485 DARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAAS 544
Query: 382 HAGKVEEGKKY 392
+ + G+++
Sbjct: 545 NLASLRHGQQF 555
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 155/329 (47%), Gaps = 62/329 (18%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG- 185
+HG+I+ G + + F+ N LI + ++ A V+FD +++ WSS+ + Y+++G
Sbjct: 49 IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 108
Query: 186 --------------------ELSMA-----------------------RSLFDEMPVRDL 202
E +A RS FD+ D+
Sbjct: 109 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQ----DV 164
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
+I Y+K G +E+A +F+++ ++ V+W +I+GY CG + +LE+F +MR
Sbjct: 165 YVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRET 224
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLL----DMTSGVAKVLHGNALIDMYAKCG 318
PD + S+L+AC+ L LE GK++H +L +M V N LID Y KC
Sbjct: 225 NVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV-----NVLIDFYTKCN 279
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
++ ++F M +++ +W+T+I G + F E++ +F EM RL +P VL
Sbjct: 280 RVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLT 339
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
+C +E+G++ Y I+ N+
Sbjct: 340 SCGSREALEQGRQV-----HAYTIKANLE 363
>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
Length = 622
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 155/537 (28%), Positives = 254/537 (47%), Gaps = 74/537 (13%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
+ L +C +R L Q+ A + + G ++ + L + + ++ + + +
Sbjct: 86 ATLLGRCCTVRCLAQLHARIILLGLHNHHALLARFTTACDALECPSVAASFIAALTDSHA 145
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ S PL A + + + P+ F+F +L+AC R+ G +H
Sbjct: 146 APLRLRNAVLASLARHAPLHAALTEFNLLRQAALPDSFSFPCLLRACARVSCLPAGRALH 205
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
++ G + F+R +LI F+ CG + A LF V+W+++ Y G +
Sbjct: 206 AAAIRLGVHADLFIRTALIQFYGRCGVADAARALFYQIDIPSEVSWTAIIVAYVNNGGII 265
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR----------------- 231
AR+LFD MP R++V WNVM+ GY K G++E A LF+E+P+R
Sbjct: 266 DARALFDTMPQRNVVHWNVMVDGYVKCGDLEGARRLFDEMPERTATACTSLIGGYAKAGN 325
Query: 232 --------------DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
DV SW+AMISGY G +AL F+E + G PD++ ++ L++A
Sbjct: 326 MEAARLLFDKLEDRDVFSWSAMISGYAQNGYPGEALRTFDEFQGQGIHPDELVVVGLMSA 385
Query: 278 CADLGDLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
C+ LG++ + + + T + A VL G L++M AKCG++ERA +F M RDV
Sbjct: 386 CSQLGNIRLASWIEDYITKYSIDMNNAHVLAG--LVNMNAKCGNLERATFLFESMPVRDV 443
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
++ +L+ G HG A++++ +F M + P F VL AC HAG VEEGKK+F +
Sbjct: 444 FSYCSLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAVFTIVLTACCHAGLVEEGKKFFDI 503
Query: 396 MRDEYNIEPNIRHYG---------------------------------------VHGDVE 416
M++ Y + P+ HY +H ++E
Sbjct: 504 MKNVYLMVPSGEHYACLVNLLGRCGMLEDAYWLIMSMPGKPHPGAWGALLGGCKLHCNIE 563
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
LG++A K+L + D +G+YV LSN+YA+ W V +VR M I K G +L+
Sbjct: 564 LGKIAAKKLFEIEPDNAGNYVSLSNMYANIDRWGDVSEVRAEMTGKRITKIAGRTLV 620
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 238/473 (50%), Gaps = 78/473 (16%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC---SIKPNKFTFSFVLK 113
YA +F ++ PD F+ ++R + +Q PL+ +++ + + + F FS + K
Sbjct: 95 YAVAVFSSLSPPDPFLAAALLRFAHLTQPPLETFRVFSGLRRAHGRDLPFLPFAFSPLAK 154
Query: 114 ACTRLLYRNMGFCVHG-KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+ H ++ GF+ +RFV NSLI + CGD+ A
Sbjct: 155 SAAAARSLPAAAGAHAVSLLLGGFDKHRFVENSLIGAYVACGDVGAA------------- 201
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
R + DEM V+D++SW ++ Y++ +M A E+F P +D
Sbjct: 202 ------------------RKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKD 243
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+V+W AM++GY M +ALE FE+M G D+V++ ++ACA LG V + V
Sbjct: 244 MVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLG--AVRRAVWI 301
Query: 293 TLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ SG+ + V+ G+ L+DMYAKCG I+ A VF GM++++V T+S++I GLA HG A
Sbjct: 302 QEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRA 361
Query: 352 EESIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
++IA+F +M +R V P +TF+GVL ACSHAG V+EG+ YF M+D Y I P+ HY
Sbjct: 362 NDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYT 421
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
+HG+ ++ ++A + L + +
Sbjct: 422 CMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEPE 481
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYL 484
G+YVLLSN AS GEW+ V KVRKLM +KK P S E D Q+
Sbjct: 482 GIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFF 534
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 151/480 (31%), Positives = 256/480 (53%), Gaps = 51/480 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F ++ E + +NT++ + DA L+ M + +++ +L
Sbjct: 112 GRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPV----RDAGSWNILL 167
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A L R+ K+ E N +++ A G ++ A LFDG + +VV
Sbjct: 168 AA----LVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVV 223
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+W+++ +GYAR + A LF +MP RD+ SWN+MITG+ + ++E+A +LF+++P+R+
Sbjct: 224 SWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRN 283
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
V++W M++GY+ ++ AL++F M G RP+ VT L + AC++L L G++VH
Sbjct: 284 VITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVH- 342
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
++ TS + L+++YAKCG I A +VF +++DV +W+ +I A HG
Sbjct: 343 QMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGV 402
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM--------RDEY---- 400
E+I ++ +MQ +P ++T+VG+L ACSH+G V+EG + F+ M RDE+
Sbjct: 403 EAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCL 462
Query: 401 --------------------NIEPNIRHYGV-------HGDVELGRLANKRLLNMRKDES 433
+EP+ + HG+ +G LA + LL + +
Sbjct: 463 IDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNA 522
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
G Y LL NIYAS G+W K+R M+D +KKQPGCS IE ++K ++F + K +S
Sbjct: 523 GTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVENKV---HVFVSRDKSHS 579
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 149/306 (48%), Gaps = 66/306 (21%)
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV-RDLVSWNVMI 209
A G ++ A LFD DVV+W++L A YAR+G L AR+LFD R++V+W ++
Sbjct: 46 AAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDARRNVVTWTALL 105
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM--RSVGERPD 267
+GYA+ G +++A LF +P+R+VVSWN M+ Y G + A +F+ M R G
Sbjct: 106 SGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAG---- 161
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLD--------MTSGVAK---------------- 303
+ LL A G+++ +K+ + + M +G+A+
Sbjct: 162 --SWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPE 219
Query: 304 --VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL---------------- 345
V+ NA+I YA+ I+ A ++F+ M RD+++W+ +I G
Sbjct: 220 RNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKM 279
Query: 346 ----------AFHGF-----AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+G+ +E ++ +F M +RP ++TF+G + ACS+ + EG+
Sbjct: 280 PRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQ 339
Query: 391 KYFKLM 396
+ +++
Sbjct: 340 QVHQMI 345
>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 148/531 (27%), Positives = 261/531 (49%), Gaps = 83/531 (15%)
Query: 30 INGFNSDSSALRELIYSGSVV----IPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQN 85
++GF+ S + + S +++ G I ++F K+T+ + + II G +
Sbjct: 179 LHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGY 238
Query: 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145
++A+ +++M + + TF+ LKA + G +H + +K GF+ + FV N+
Sbjct: 239 NMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINT 298
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRD---- 201
L + CG + LF+ DVV+W++L Y ++GE A F M +
Sbjct: 299 LATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPN 358
Query: 202 ---------------LVSW--------------------NVMITGYAKQGEMEKANELFN 226
+ W N ++T Y+K G ++ A+ +F+
Sbjct: 359 KYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFH 418
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+ ++D++SW+ +I+ Y G K+A + MR G +P++ + S+L+ C + LE
Sbjct: 419 GITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQ 478
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
GK+VH +L + ++H +ALI MY+KCGS+E A ++F GM+ ++ +W+ +I G A
Sbjct: 479 GKQVHAHVLCIGIDHEAMVH-SALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYA 537
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HG+++E+I +F ++ + ++P +TF+GVL ACSHAG V+ G YF LM +EY I P+
Sbjct: 538 EHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSK 597
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HYG VHGDV+ GR ++LL
Sbjct: 598 EHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLR 657
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + +G ++ L+NIYA++G W +RKLM + K+ G S + +DK
Sbjct: 658 LDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDK 708
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 4/194 (2%)
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
V +++ N + KQG++ K+ +F+++ RD +SW +I+GYV + +AL +F
Sbjct: 87 VHNMLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSN 146
Query: 259 MRSVGERPDDVTMLSL-LTACADLGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAK 316
M D M+S+ L AC ++ G+ +H + SG + V +ALIDMY K
Sbjct: 147 MWVQPGLQRDQFMISVALKACGLGVNICFGELLHG--FSVKSGLINSVFVSSALIDMYMK 204
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
G IE+ VF M R+V +W+ +I GL G+ E++ F EM KV TF
Sbjct: 205 VGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIA 264
Query: 377 LVACSHAGKVEEGK 390
L A + + + GK
Sbjct: 265 LKASADSSLLHHGK 278
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 150/344 (43%), Gaps = 19/344 (5%)
Query: 4 NRHRSSRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYA 58
N++ + + C NL K QI V G S ++ YS S G + A
Sbjct: 358 NKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKS----GLLKSA 413
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
+F IT D ++TII +Q +A + M + KPN+F S VL C +
Sbjct: 414 SLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSM 473
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
G VH ++ G + V ++LI ++ CG + AS +F+G ++++W+++
Sbjct: 474 ALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMI 533
Query: 179 AGYARRGELSMARSLFDEMPV----RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
GYA G A +LF+++ D V++ ++T + G ++ F + +
Sbjct: 534 NGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQI 593
Query: 235 SWNAMISGYV---LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
S + G + LC + + E +RS+ DDV +LL +C GD++ G+
Sbjct: 594 SPSKEHYGCIIDLLCRAGRLS-EAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTA 652
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
LL + A AL ++YA G + A + M+ + V
Sbjct: 653 EQLLRLDPNSAGT--HIALANIYAAKGRWKEAAHIRKLMKSKGV 694
>gi|242048094|ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
gi|241925170|gb|EER98314.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
Length = 601
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 150/453 (33%), Positives = 232/453 (51%), Gaps = 71/453 (15%)
Query: 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
M + PN FTF+F+L+AC L + CVHG+IV+ GF + V+N+L+ + CGD
Sbjct: 103 MRAAGVSPNGFTFTFLLRACESLRRLPLCRCVHGQIVRCGFGSDVVVQNALLNVYYKCGD 162
Query: 156 ---LNTASVLFDGDAKMDVVAWSSLT-------------------------------AGY 181
+ A +FDG A DVV+W+S+ A +
Sbjct: 163 PGDVGVARKVFDGMADRDVVSWNSIVGVYMSSGDTTGAMELFEAIPERNVVSWNTIVAAF 222
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYA---------------------------- 213
R G++ A ++FD MP+RD +SWN+MI+GYA
Sbjct: 223 TRAGDMVSAHAVFDRMPIRDAISWNLMISGYAGSGNVESARTLFDLMDRKDVVSWTAMVS 282
Query: 214 ---KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDV 269
K G+++ A LF+++P +++VSWNAMI+GY +AL F++M G PD+
Sbjct: 283 AYAKIGDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTFQQMMLEGRFMPDEA 342
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
T++S+++ACA LG +E + + + + L GNALIDM+AKCG + RA F
Sbjct: 343 TLVSVVSACAQLGSVEYCNWISSYISKSNTHITVAL-GNALIDMFAKCGDVGRARLAFDK 401
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M+ R V TW+T+I G A++G E++ ++ ++ R V + F+ L AC+H G ++EG
Sbjct: 402 MKTRCVITWTTMISGFAYNGQFREALLIYSDICREGVTLDDTIFIAALAACAHGGLLQEG 461
Query: 390 KKYFKLMRDEYNIEPNIRHYG----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
FK M + Y I P + HYG + G EL + R++ + S VL+SN A
Sbjct: 462 WSIFKQMVEHYGIVPRMEHYGCIVDLLGRAELTEYVSARVVEIEPFNSSYQVLVSNCSAL 521
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G W V RK + D ++K PG SLI+ ++
Sbjct: 522 EGRWGSVMDARKTLRDRGVEKTPGSSLIQVGNE 554
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 151/471 (32%), Positives = 241/471 (51%), Gaps = 60/471 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F TE D +N ++ G Q +A L+ +M P + S+ +
Sbjct: 51 GRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRM------PGRDVVSWNI 104
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNR------FVRNSLIYFHANCGDLNTASVLFDGD 166
G+ G +V+ F+ F +++ +A G L A +FD
Sbjct: 105 MVS--------GYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 156
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+ + V+W+++ A Y +R + A+ LF+ MP R++ SWN M+TGYA+ G +E+A +F+
Sbjct: 157 PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 216
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+P++D VSW AM++ Y G +++ L++F EM GE + +L+ CAD+ LE
Sbjct: 217 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 276
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G ++H L+ GV + GNAL+ MY KCG++E A F M +RDV +W+T+I G A
Sbjct: 277 GMQLHGRLIRAGYGVGCFV-GNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYA 335
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HGF +E++ +F M+ +P +IT VGVL ACSH+G VE+G YF M ++ +
Sbjct: 336 RHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 395
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HY +H + ELGR A +++
Sbjct: 396 EHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE 455
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + +G YVLLSNIYAS G+W K+R +M++ +KK PG S IE +K
Sbjct: 456 LEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNK 506
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 144/260 (55%), Gaps = 10/260 (3%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N ++ + G + A LF+ + DV++W++L +GY + G++S AR LFD MP RD+V
Sbjct: 41 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 100
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN+M++GYA++G+M +A LF+ P RDV +W A++SGY GM ++A +F+ M
Sbjct: 101 SWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP--- 157
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
ER + V+ +++ A ++ K+ L +M V N ++ YA+ G +E A
Sbjct: 158 ER-NAVSWNAMVAAYIQRRMMDEAKE----LFNMMP-CRNVASWNTMLTGYAQAGMLEEA 211
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
VF M +D +W+ ++ + G +EE++ +F EM R F VL C+
Sbjct: 212 KAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADI 271
Query: 384 GKVEEGKK-YFKLMRDEYNI 402
+E G + + +L+R Y +
Sbjct: 272 AALECGMQLHGRLIRAGYGV 291
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 133/250 (53%), Gaps = 13/250 (5%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N +I HAN G ++ A FD + D V+W+ + A Y R G + AR LF+ D++
Sbjct: 10 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVI 69
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN +++GY + G+M +A ELF+ +P RDVVSWN M+SGY G +A +F+
Sbjct: 70 SWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD----AA 125
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
D T ++++ A G LE ++V + + + + NA++ Y + ++ A
Sbjct: 126 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA-----VSWNAMVAAYIQRRMMDEA 180
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
E+F M R+V++W+T++ G A G EE+ A+F M + +++ +L A S
Sbjct: 181 KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP----QKDAVSWAAMLAAYSQG 236
Query: 384 GKVEEGKKYF 393
G EE + F
Sbjct: 237 GCSEETLQLF 246
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 13/227 (5%)
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
D V ++ + + +A G +S+AR FD P +D VSWN M+ Y + G +E+A LFN
Sbjct: 5 DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 64
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
+ DV+SWNA++SGYV G +A E+F+ M D V+ +++ A GD+ ++
Sbjct: 65 EWDVISWNALMSGYVQWGKMSEARELFDRMPG----RDVVSWNIMVSGYARRGDMVEARR 120
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
L D + V V A++ YA+ G +E A VF M +R+ +W+ ++
Sbjct: 121 ----LFD-AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRR 175
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+E+ +F M V ++ +L + AG +EE K F M
Sbjct: 176 MMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTM 218
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 13/200 (6%)
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MPVRD V++NVMI+ +A G + A F+ P++D VSWN M++ YV G ++A +F
Sbjct: 1 MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
D ++ +L++ G + ++ L D G V+ N ++ YA+
Sbjct: 61 NSRTEW----DVISWNALMSGYVQWGKMSEARE----LFDRMPG-RDVVSWNIMVSGYAR 111
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
G + A +F RDV TW+ ++ G A +G EE+ +F M +++ +
Sbjct: 112 RGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNA----VSWNAM 167
Query: 377 LVACSHAGKVEEGKKYFKLM 396
+ A ++E K+ F +M
Sbjct: 168 VAAYIQRRMMDEAKELFNMM 187
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 179/528 (33%), Positives = 252/528 (47%), Gaps = 122/528 (23%)
Query: 4 NRHRSS-RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGA---INYAH 59
N HR L + C+++ LKQ+ A + + + L +Y + + + +NYA
Sbjct: 27 NHHRRILSLAETCSDMSQLKQLHAFTLRTTYPDEPATL--FLYGKILQLSSSFSDVNYAF 84
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF-LYTQM-EKCSIKPNKFTFSFVLKACTR 117
++F I +FM+NT+IR A + + F LY +M E+ P+K TF FVLKAC
Sbjct: 85 RVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAY 144
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+ + G VH +IVK+GF + +V N LI+F+ +CG L+
Sbjct: 145 IFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLD-------------------- 184
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
+AR +FDEMP R LVSWN MI + GE + A +LF ++ K
Sbjct: 185 -----------LARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQKS------ 227
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL-D 296
FE PD TM S+L+ACA LG L +G H LL +
Sbjct: 228 ------------------FE--------PDGYTMQSVLSACAGLGSLSLGTWSHVFLLRN 261
Query: 297 MTSGVA-KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
VA VL N+LI+MY KCGS+ A +VF GMR D+++W+ +I G A HG AEE++
Sbjct: 262 CDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAM 321
Query: 356 AMFREMQR--LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413
F M + V+P +TFV +L+AC+H G V +G++YF +M EY IEP + HYG
Sbjct: 322 NCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCII 381
Query: 414 D----------------------------------------VELGRLANKRLLNMRKDE- 432
D VEL + ++ +D
Sbjct: 382 DLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQ 441
Query: 433 ------SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
SG YVLLS +YAS WN V VRKLM D I+K+PGCS IE
Sbjct: 442 SSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIE 489
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 152/447 (34%), Positives = 219/447 (48%), Gaps = 76/447 (17%)
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY----RNMGFCV 127
++N +IR A S P A+ LY + + P T +LK+ R + V
Sbjct: 173 LHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAV 232
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANC-GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
H VK G V N+LI HA G L+ A VL A +D
Sbjct: 233 HAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDAS-------------- 278
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
++N +IT YA+ G + A LF+E+P R+ VSW+AM++GYV
Sbjct: 279 -----------------TFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQA 321
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
G ++AL +F M++ G RPDD ++ +L ACA LG LE GK VH L + V
Sbjct: 322 GDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVH-GYLKANNIRITVFL 380
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
G AL+DMYAKCG ++ A+EVF M++++V W+T+I GLA HG E++ +F +M+RL V
Sbjct: 381 GTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGV 440
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------- 411
+P +I F+G L AC+H G V++G++ F M +Y I+P I HYG
Sbjct: 441 KPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAR 500
Query: 412 ------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
H +VEL K + + D+SG YVLL NIYA+ G
Sbjct: 501 EMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASG 560
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIE 474
++R LM + + K PGCS +E
Sbjct: 561 RHASAREIRHLMREKGVDKTPGCSTVE 587
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 134/294 (45%), Gaps = 18/294 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F ++ + ++ ++ G Q+ + +A+ L+ +M+ ++P+ VL
Sbjct: 291 GRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVL 350
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC +L G VHG + F+ +L+ +A CG++ A +F + +V+
Sbjct: 351 AACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVL 410
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEV 228
AW+++ G A G S A LF +M D +++ + G ++K ELF+ +
Sbjct: 411 AWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSM 470
Query: 229 PKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
++ + + M+ G+ +A EM E+M +PD + +L+ C +
Sbjct: 471 VRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPM---KPDALIWGALMAGCRFHKN 527
Query: 284 LEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+E+ + V H L+ A VL GN +YA G A E+ MR++ V
Sbjct: 528 VELAEYVVKHWIELEPDKSGAYVLLGN----IYAASGRHASAREIRHLMREKGV 577
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 167/535 (31%), Positives = 261/535 (48%), Gaps = 116/535 (21%)
Query: 9 SRLWKKCTNL--------RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
S + +KC +L LKQI A +G + + + V + +++A +
Sbjct: 31 SFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQ 90
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLL 119
+F +I P+ F +NT+IRG A+S+NP AV L++QM S I P
Sbjct: 91 IFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILP---------------- 134
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK-MDVVAWSSLT 178
D +T LF AK MDV +
Sbjct: 135 -----------------------------------DTHTFPFLFKAVAKLMDVSLGEGIH 159
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
+ R G FD + N ++ Y+ G + A ++F + RD V+WN+
Sbjct: 160 SVVVRNG--------FDSLRFVQ----NSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNS 207
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
+I+G+ L GM +AL ++ EM S G PD TM+SLL+AC +LG L +G++VH ++ +
Sbjct: 208 VINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKV- 266
Query: 299 SGVAKVLHG-NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
G+ + H NAL+D+Y+KCG+ A +VF M +R V +W++LI GLA +G E++ +
Sbjct: 267 -GLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKL 325
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------- 410
F E++R ++P+EITFVGVL ACSH G ++EG YF+ M++EY I P I H+G
Sbjct: 326 FGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLC 385
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
+HG +ELG +A + + + SGD+VL
Sbjct: 386 RAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVL 445
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
LSN+YAS W V+ VRK+M +KK PG SL+E ++ + +++ + P S
Sbjct: 446 LSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVY-EFIMGDRSHPQS 499
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 222/418 (53%), Gaps = 41/418 (9%)
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
P+ + SF L C+RL + VH V+ G + +V N+ + D+ +A L
Sbjct: 69 PDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVASAERL 128
Query: 163 FDGDAK--MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK 220
F ++ DVV W+++ G+A G++ AR FD MP +++VSWN M+ YA+ G + K
Sbjct: 129 FSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPK 188
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A +LF+ +P R+ +W +MI+G + ++AL +F +M + G P++ ++S ++AC
Sbjct: 189 ARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPALVSTVSACTQ 248
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
L +E G VH +G + A++DMY KCGSI A+ VF M R++ +W++
Sbjct: 249 LRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNS 308
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
+I GLA +G +++++F +MQ VRP +ITF+G+L ACSH+G V+EG+ F M + +
Sbjct: 309 MIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHF 368
Query: 401 NIEPNIRHYG---------------------------------------VHGDVELGRLA 421
I+P HYG +HG+VELG
Sbjct: 369 GIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEV 428
Query: 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
K+L+ + Y+LLSNIYA+ W+ + VR+++ D + K G +++ D ++
Sbjct: 429 AKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIVGNDSQS 486
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 135/306 (44%), Gaps = 29/306 (9%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
G+ G + A K+F ++ + + ++I G QS + +A+ +++ M + PN+
Sbjct: 178 GAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEP 237
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVK-YGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165
+ ACT+L + G VHG + + + +++ + CG + A +F
Sbjct: 238 ALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAA 297
Query: 166 DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKA 221
++ +W+S+ AG A G A SLF +M + + +++ +++ + G +++
Sbjct: 298 MPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEG 357
Query: 222 NELF---------NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
LF VP+ + M+ L G + E + ++S+ P
Sbjct: 358 RWLFYKMVNHFGIQPVPEH----YGLMVD---LLGRSGHVREAVDFVKSMPVEPHPGLWG 410
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI---DMYAKCGSIERAIEVFLG 329
+L AC G++E+G++V L+++ + HG+ I ++YA + V
Sbjct: 411 ALAGACKIHGEVELGEEVAKKLIEL-----EPQHGSRYILLSNIYATSNRWDDMANVRRI 465
Query: 330 MRDRDV 335
++DR V
Sbjct: 466 LKDRKV 471
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/507 (30%), Positives = 247/507 (48%), Gaps = 74/507 (14%)
Query: 11 LWKKCTNLRTLKQIQA-LVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
L +KC +L LKQI VT+ S L + + + ++ A K+F I PD
Sbjct: 9 LLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVD-AQKVFNHIQNPD 67
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+ +I + P A +++ + ++P+ F + AC + G VHG
Sbjct: 68 IVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHG 127
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ ++ + V N+LI Y+R G + +
Sbjct: 128 MVFRFELGSDPIVGNALIDM-------------------------------YSRSGAIEV 156
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
A S+F M ++D+ SW ++ G+ K ++E A +F+E+P R+ VSW AMI+GYV +
Sbjct: 157 ACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVP 216
Query: 250 KQALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
LE+F+EMR+ G + P +T++++L+ CAD+G ++G VH ++ T+ V N
Sbjct: 217 IPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVH-GYVNKTNLDLDVTVNN 275
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
AL+DMYAK G++ A+++F M RDV +W+T+I GLA HG ++ F +M + V P
Sbjct: 276 ALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVP 335
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
E+T + VL ACSHAG V EG+ F+ M + I+P I+HYG
Sbjct: 336 NEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKEL 395
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
VHG++ L +A K ++ + D+ G Y+LL NIY S W
Sbjct: 396 IEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRW 455
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEAD 476
K RK M D +KK+PGCS +E +
Sbjct: 456 EDALKARKAMRDRRVKKKPGCSWVEVN 482
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 166/542 (30%), Positives = 252/542 (46%), Gaps = 88/542 (16%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
KQI V G++ S I V G++NYA +MF ++ E D +NT+I G A
Sbjct: 317 KQIHGAVVRFGWDQFVSVANSAI--NMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCA 374
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV----HGKIVKYGFE 137
+S ++ L+ + + + P++FT + VL+AC+ L +CV H +K G
Sbjct: 375 RSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSL---EESYCVGRQVHTCALKAGIV 431
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ FV +LI ++ G + A +LF D+ +W+++ G+ A LF M
Sbjct: 432 LDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLM 491
Query: 198 PVR---------------------------------------DLVSWNVMITGYAKQGEM 218
R DL + ++ Y K GEM
Sbjct: 492 HERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEM 551
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+ A ++FN++P D V+W +ISG V G +QAL + +MR G +PD+ T +L+ AC
Sbjct: 552 KSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKAC 611
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
+ L LE GK++H ++ + + +L+DMYAKCG+IE A +F M R V+ W
Sbjct: 612 SLLTALEQGKQIHANIMKLNCAFDPFVM-TSLVDMYAKCGNIEDAYGLFRRMNTRSVALW 670
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+ +I GLA HG AEE++ F EM+ V P +TF+GVL ACSH+G + K F M+
Sbjct: 671 NAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQK 730
Query: 399 EYNIEPNIRHYG---------------------------------------VHGDVELGR 419
Y +EP I HY V GD E G
Sbjct: 731 TYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGE 790
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
++L M +S YVLLSNIYA+ +W R +M ++KK+PG S I+ +K
Sbjct: 791 RVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKV 850
Query: 480 FL 481
L
Sbjct: 851 HL 852
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/384 (27%), Positives = 174/384 (45%), Gaps = 31/384 (8%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF--VKITEPDTFMYNTIIRG 79
K+ A++ +G N D LI + G++ A K+F ++ D YN I+
Sbjct: 33 KRTHAVIVTSGLNPDRYVTNNLITMYAKC--GSLFSARKLFDITPQSDRDLVTYNAILAA 90
Query: 80 SAQS------QNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
A + + +A ++ + + + + T S + K C + + G VK
Sbjct: 91 YAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVK 150
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG---ELSMA 190
G +++ FV +L+ +A + A VLFD DVV W+ + Y G E+
Sbjct: 151 IGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGL 210
Query: 191 RSLFDEMPVR-DLVSWNVMITGYAKQGEMEK--------ANELFNEVPKRDVVSWNAMIS 241
S F +R D VS ++ G K+ E+ A +LF DV WN +S
Sbjct: 211 FSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLS 270
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL----DM 297
Y+ G +A++ F +M D +T + +L+ A L LE+GK++H ++ D
Sbjct: 271 SYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQ 330
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
VA N+ I+MY K GS+ A +F M++ D+ +W+T+I G A G E S+ +
Sbjct: 331 FVSVA-----NSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRL 385
Query: 358 FREMQRLKVRPTEITFVGVLVACS 381
F ++ R + P + T VL ACS
Sbjct: 386 FIDLLRSGLLPDQFTITSVLRACS 409
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/447 (34%), Positives = 219/447 (48%), Gaps = 76/447 (17%)
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY----RNMGFCV 127
++N +IR A S P A+ LY + + P T +LK+ R + V
Sbjct: 173 LHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAV 232
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANC-GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
H VK G V N+LI HA G L+ A VL A +D
Sbjct: 233 HAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDAS-------------- 278
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
++N +IT YA+ G + A LF+E+P R+ VSW+AM++GYV
Sbjct: 279 -----------------TFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQA 321
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
G ++AL +F M++ G RPDD ++ +L ACA LG LE GK VH L + V
Sbjct: 322 GDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVH-GYLKANNIRITVFL 380
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
G AL+DMYAKCG ++ A+EVF M++++V W+T+I GLA HG E++ +F +M+RL V
Sbjct: 381 GTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGV 440
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------- 411
+P +I F+G L AC+H G V++G++ F M +Y I+P I HYG
Sbjct: 441 KPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAR 500
Query: 412 ------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
H +VEL K + + D+SG YVLL NIYA+ G
Sbjct: 501 EMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASG 560
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIE 474
++R LM + + K PGCS +E
Sbjct: 561 RHASAREIRHLMREKGVDKTPGCSTVE 587
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 134/294 (45%), Gaps = 18/294 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F ++ + ++ ++ G Q+ + +A+ L+ +M+ ++P+ VL
Sbjct: 291 GRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVL 350
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC +L G VHG + F+ +L+ +A CG++ A +F + +V+
Sbjct: 351 AACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVL 410
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEV 228
AW+++ G A G S A LF +M D +++ + G ++K ELF+ +
Sbjct: 411 AWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSM 470
Query: 229 PKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
++ + + M+ G+ +A EM E+M +PD + +L+ C +
Sbjct: 471 VRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPM---KPDALIWGALMAGCRFHKN 527
Query: 284 LEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+E+ + V H L+ A VL GN +YA G A E+ MR++ V
Sbjct: 528 VELAEYVVKHWIELEPDKSGAYVLLGN----IYAASGRHASAREIRHLMREKGV 577
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 222/418 (53%), Gaps = 41/418 (9%)
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
P+ + SF L C+RL + VH V+ G + +V N+ + D+ +A L
Sbjct: 69 PDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVASAERL 128
Query: 163 FDGDAK--MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK 220
F ++ DVV W+++ G+A G++ AR FD MP +++VSWN M+ YA+ G + K
Sbjct: 129 FSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPK 188
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A +LF+ +P R+ +W +MI+G + ++AL +F +M + G P++ ++S ++AC
Sbjct: 189 ARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTVSACTQ 248
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
L +E G VH +G + A++DMY KCGSI A+ VF M R++ +W++
Sbjct: 249 LRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNS 308
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
+I GLA +G +++++F +MQ VRP +ITF+G+L ACSH+G V+EG+ F M + +
Sbjct: 309 MIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHF 368
Query: 401 NIEPNIRHYG---------------------------------------VHGDVELGRLA 421
I+P HYG +HG+VELG
Sbjct: 369 GIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEV 428
Query: 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
K+L+ + Y+LLSNIYA+ W+ + VR+++ D + K G +++ D ++
Sbjct: 429 AKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIVGNDSQS 486
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 136/306 (44%), Gaps = 29/306 (9%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
G+ G + A K+F ++ + + ++I G QS + +A+ +++ M C + PN+
Sbjct: 178 GAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEP 237
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVK-YGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165
+ ACT+L + G VHG + + + +++ + CG + A +F
Sbjct: 238 ALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAA 297
Query: 166 DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKA 221
++ +W+S+ AG A G A SLF +M + + +++ +++ + G +++
Sbjct: 298 MPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEG 357
Query: 222 NELF---------NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
LF VP+ + M+ L G + E + ++S+ P
Sbjct: 358 RWLFYKMVNHFGIQPVPEH----YGLMVD---LLGRSGHVREAVDFVKSMPVEPHPGLWG 410
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI---DMYAKCGSIERAIEVFLG 329
+L AC G++E+G++V L+++ + HG+ I ++YA + V
Sbjct: 411 ALAGACKIHGEVELGEEVAKKLIEL-----EPQHGSRYILLSNIYATSNRWDDMANVRRI 465
Query: 330 MRDRDV 335
++DR V
Sbjct: 466 LKDRKV 471
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 238/462 (51%), Gaps = 71/462 (15%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I++A K+F P+ ++Y ++I G + DA+ L+ QM + + + + + +LKA
Sbjct: 75 IDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKA 134
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C G VHG ++K G +R + L+ + CG VL D
Sbjct: 135 CVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCG------VLED---------- 178
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
AR +FD MP RD+V+ VMI G +E+A E+FNE+ RD V
Sbjct: 179 ---------------ARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTV 223
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
W +I G V G + LE+F EM+ G P++VT + +L+ACA LG LE+G+ +H +
Sbjct: 224 CWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYM 283
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
V + + G ALI+MY++CG I+ A +F G+R +DVST++++IGGLA HG + E+
Sbjct: 284 RKCGVEVNRFVAG-ALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEA 342
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
+ +F EM + +VRP ITFVGVL ACSH G V+ G + F+ M + IEP + HYG
Sbjct: 343 VELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVD 402
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
+H ++ +G K L + +SG
Sbjct: 403 ILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGS 462
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+++LSN YAS G W+ +VR+ M+ I K+PGCS IE ++
Sbjct: 463 FIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNN 504
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 126/253 (49%), Gaps = 12/253 (4%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
GS G + A ++F ++ DT + +I G ++ + ++ +M+ ++PN+
Sbjct: 199 GSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEV 258
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
TF VL AC +L +G +H + K G E NRFV +LI ++ CGD++ A LFDG
Sbjct: 259 TFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGV 318
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEM---PVR-DLVSWNVMITGYAKQGEMEKAN 222
DV ++S+ G A G+ A LF EM VR + +++ ++ + G ++
Sbjct: 319 RVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGG 378
Query: 223 ELFNEVP-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
E+F + + +V + M+ + G + E F+ + +G DD + SLL+A
Sbjct: 379 EIFESMEMIHGIEPEVEHYGCMVD---ILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSA 435
Query: 278 CADLGDLEVGKKV 290
C ++ +G+KV
Sbjct: 436 CKIHKNIGMGEKV 448
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 32/217 (14%)
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
Y K ++ A +LF +V + ++I G+V G A+ +F +M D+ +
Sbjct: 69 YCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAV 128
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS------------ 319
++L AC L GK+VH +L G+ + + L+++Y KCG
Sbjct: 129 TAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSI-ALKLVELYGKCGVLEDARKMFDGMP 187
Query: 320 -------------------IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+E AIEVF M RD W+ +I GL +G + +FRE
Sbjct: 188 ERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFRE 247
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
MQ V P E+TFV VL AC+ G +E G+ MR
Sbjct: 248 MQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMR 284
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 205/345 (59%), Gaps = 4/345 (1%)
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E N NS++ + G++ A +F+ + V+W+S+ +GY R G++ A+S+F +
Sbjct: 105 ERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQ 164
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP + +VSW MI+GYA G+++ A +FN +P ++VVSWNAMISGYV QAL +F
Sbjct: 165 MPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVF 224
Query: 257 EEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
M GE RPD T++S+L+ACA LG LE GK ++ + ++ L GNALIDM+A
Sbjct: 225 HHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPL-GNALIDMFA 283
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
KCG +E A EVF M R + TW+T++ GLA +G E+I +F +M +P ++ F+
Sbjct: 284 KCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIA 343
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV--ELGRLANKRLLNMRKDES 433
VL AC+H G VEEGK+ F M E+ I+P I HYG D+ G+L ++++
Sbjct: 344 VLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAKIMDQEPSNP 403
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
L+SN+ AS G W V R M ++K PGCS I+ ++
Sbjct: 404 SYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNR 448
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 156/297 (52%), Gaps = 42/297 (14%)
Query: 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
M+ ++ N FTF+F+LK G +HG+I+K GF + FV+NSL+ F+ANC +
Sbjct: 1 MKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSE 60
Query: 156 -LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK 214
L +A +F+ + DV++W+S+ + Y RGE+ A L D+MP R++V+WN ++ G +K
Sbjct: 61 NLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSK 120
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
G ME A+ +F ++P R+ VSWN+MISGYV G + A +F +M P+
Sbjct: 121 AGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQM------PEKT----- 169
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD 334
V+ A+I YA G ++ A +F M ++
Sbjct: 170 -----------------------------VVSWTAMISGYATNGDLKSAENIFNHMPVKN 200
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQ-RLKVRPTEITFVGVLVACSHAGKVEEGK 390
V +W+ +I G + ++++ +F M + RP + T + +L AC+H G +E GK
Sbjct: 201 VVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGK 257
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 9/183 (4%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM---EKCSIKPNKFTFS 109
G + A +F + + +N +I G + A+ ++ M +C +P++ T
Sbjct: 184 GDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGEC--RPDQTTLI 241
Query: 110 FVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
+L AC L G ++ I K + + N+LI A CGD+ A +F +K
Sbjct: 242 SILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKR 301
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELF 225
++ W+++ +G A G+ A +LFD+M + D V + +++ G +E+ +F
Sbjct: 302 CIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVF 361
Query: 226 NEV 228
+++
Sbjct: 362 DQM 364
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 154/504 (30%), Positives = 241/504 (47%), Gaps = 81/504 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++ A +F D +N++I G AQ + A L+ +M+ ++P+ TF+ VL
Sbjct: 480 GSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVL 539
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C +G +HG+I + G + + + N+LI + CG L A +F DV+
Sbjct: 540 SGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVM 599
Query: 173 AWSSLTAGYARRGELSMARSLFDEM------PVRDLVS---------------------- 204
+W+++ G A +GE A LF +M PV+ S
Sbjct: 600 SWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYI 659
Query: 205 -----------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
N +I+ Y+K G M A E+F+++P RD+VSWN +I+GY G+ + A+
Sbjct: 660 LNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAV 719
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT-SGVAKVLHGNALID 312
E +M+ P+ + +SLL AC+ LE GK+VH ++ G +V G ALI
Sbjct: 720 EFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRV--GAALIS 777
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCGS A EVF + +++V TW+ +I A HG A +++ F M++ ++P T
Sbjct: 778 MYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGST 837
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F +L AC+HAG V EG + F M EY + P I HYG
Sbjct: 838 FTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQM 897
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+HG++ L A L + Y+LLSN+YA+ G W+ V
Sbjct: 898 PFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVA 957
Query: 454 KVRKLMDDSDIKKQPGCSLIEADD 477
K+R++M+ I+K+PG S IE D+
Sbjct: 958 KIRRVMEGRGIRKEPGRSWIEVDN 981
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 205/410 (50%), Gaps = 44/410 (10%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
K+I L G NSD L+ V G ++ A + F + D +YN +I A
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTM--CVRCGDVDSAKQAFKGTADRDVVVYNALIAALA 306
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
Q + ++A Y +M + N+ T+ +L AC+ G +H I + G +
Sbjct: 307 QHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQ 366
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM---- 197
+ N+LI +A CGDL A LF K D+++W+++ AGYARR + A L+ +M
Sbjct: 367 IGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG 426
Query: 198 --PVR----DLVS-----------------------------WNVMITGYAKQGEMEKAN 222
P R L+S N ++ Y + G + +A
Sbjct: 427 VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQ 486
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+F RDV+SWN+MI+G+ G + A ++F+EM++ PD++T S+L+ C +
Sbjct: 487 NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPE 546
Query: 283 DLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
LE+GK++H + + SG+ V GNALI+MY +CGS++ A VF ++ RDV +W+ +
Sbjct: 547 ALELGKQIHGRITE--SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAM 604
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
IGG A G ++I +F +MQ RP + TF +L C+ + ++EGKK
Sbjct: 605 IGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKK 654
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 216/461 (46%), Gaps = 63/461 (13%)
Query: 4 NRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
NR + C+ + L K I + ++ +G +SD LI + G + A +
Sbjct: 329 NRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC--GDLPKARE 386
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F + + D +N II G A+ ++ +A+ LY QM+ +KP + TF +L AC
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
G +H I++ G + N + N+L+ + CG L A +F+G DV++W+S+ AG
Sbjct: 447 YADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAG 506
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNV--------------------------------- 207
+A+ G A LF EM +L N+
Sbjct: 507 HAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLD 566
Query: 208 ------MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
+I Y + G ++ A +F+ + RDV+SW AMI G G + +A+E+F +M++
Sbjct: 567 VNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQN 626
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL----DMTSGVAKVLHGNALIDMYAKC 317
G RP T S+L C L+ GKKV +L ++ +GV GNALI Y+K
Sbjct: 627 EGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGV-----GNALISAYSKS 681
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
GS+ A EVF M RD+ +W+ +I G A +G + ++ +MQ V P + +FV +L
Sbjct: 682 GSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLL 741
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELG 418
ACS +EEGK+ + I + GDV +G
Sbjct: 742 NACSSFSALEEGKR----------VHAEIVKRKLQGDVRVG 772
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 195/412 (47%), Gaps = 54/412 (13%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
AH++F ++ D +N++I AQ A L+ +M+ PNK T+ +L AC
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
G +H +I+K G++ + V+NSL+ + CGDL A +F G + DVV+++++
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200
Query: 178 TAGYARRGELSMARSLFDEMPVR------------------------------------- 200
YA++ + LF +M
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGL 260
Query: 201 --DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
D+ ++T + G+++ A + F RDVV +NA+I+ G N +A E +
Sbjct: 261 NSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYR 320
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
MRS G + T LS+L AC+ LE GK +H + + + V GNALI MYA+CG
Sbjct: 321 MRSDGVALNRTTYLSILNACSTSKALEAGKLIH-SHISEDGHSSDVQIGNALISMYARCG 379
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
+ +A E+F M RD+ +W+ +I G A E++ ++++MQ V+P +TF+ +L
Sbjct: 380 DLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRK 430
AC+++ +GK I +I G+ + G LAN L+NM +
Sbjct: 440 ACANSSAYADGKM----------IHEDILRSGIKSN---GHLANA-LMNMYR 477
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 129/218 (59%), Gaps = 11/218 (5%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D+ N++I Y K + A+++F E+P+RDV+SWN++IS Y G K+A ++FEEM+
Sbjct: 61 DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 120
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
+ G P+ +T +S+LTAC +LE GKK+H ++ + N+L+ MY KCG +
Sbjct: 121 NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQ-NSLLSMYGKCGDL 179
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
RA +VF G+ RDV +++T++G A + +E + +F +M + P ++T++ +L A
Sbjct: 180 PRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAF 239
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELG 418
+ ++EGK+ KL +E G++ D+ +G
Sbjct: 240 TTPSMLDEGKRIHKLTVEE----------GLNSDIRVG 267
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 9/194 (4%)
Query: 9 SRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFV 63
S + K CT+ L K++ A + +G+ D+ LI YS S G++ A ++F
Sbjct: 637 SSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKS----GSMTDAREVFD 692
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
K+ D +N II G AQ+ AV QM++ + PNKF+F +L AC+
Sbjct: 693 KMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEE 752
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G VH +IVK + + V +LI +A CG A +FD + +VV W+++ YA+
Sbjct: 753 GKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQ 812
Query: 184 RGELSMARSLFDEM 197
G S A F+ M
Sbjct: 813 HGLASKALGFFNCM 826
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 231/458 (50%), Gaps = 76/458 (16%)
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
+ ++ + FMYN++IRG S +P A+ Y M + N +TF ++KACT L +
Sbjct: 342 INLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSS 401
Query: 123 --MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+G VH +V +GF+ + FV ++LI F+ S+ FD
Sbjct: 402 KLIGCLVHAHVVTFGFDEDPFVVSALIEFY---------SLNFD---------------- 436
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
+ AR+LFD +P RD+V W MI GY K G++E A LF ++P+R+ +SW+A++
Sbjct: 437 ------MGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVM 490
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+ Y G K+ L +F M+ G P++ ++S+LTACA LG L G VH
Sbjct: 491 AAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFD 550
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+L AL+DMY+KCG +E A+ F G+ ++D W+ +I G+A +G A +S+ +F +
Sbjct: 551 SNPIL-ATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNK 609
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M +PTE TFV VL AC+HA V EG K F+ M Y +EP HY
Sbjct: 610 MISNGTQPTETTFVAVLTACTHARLVREGLKLFEQMSSNYGVEPQXEHYACLVDLMARAG 669
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
+G++E+G K+L +M + G +VL
Sbjct: 670 MLAEAEKFIEEKMGGLGRGDANVWGAXLGACRTYGNIEVGNRVWKKLADMGVADCGTHVL 729
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
N+Y G ++VR+L+ + +KK+PGCS+IE D
Sbjct: 730 SYNLYREAGWDMEAKRVRRLISEXGMKKKPGCSIIEVD 767
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 113/261 (43%), Gaps = 15/261 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + +A +F + E + ++ ++ ++ + + + L+ +M++ PN+ VL
Sbjct: 466 GDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVL 525
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L G VH + F+ N + +L+ ++ CG + +A F G D
Sbjct: 526 TACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAG 585
Query: 173 AWSSLTAGYARRGELSMARSLFDEM------PVRDLVSWNVMITGYAKQGEMEKANELFN 226
AW+++ +G A G+ + LF++M P ++ ++T + + +LF
Sbjct: 586 AWNAMISGVAMNGDAWKSLELFNKMISNGTQPTE--TTFVAVLTACTHARLVREGLKLFE 643
Query: 227 EVPKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
++ V + ++ GM +A + EE R D + L AC
Sbjct: 644 QMSSNYGVEPQXEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAXLGACRTY 703
Query: 282 GDLEVGKKVHCTLLDMTSGVA 302
G++EVG +V L DM GVA
Sbjct: 704 GNIEVGNRVWKKLADM--GVA 722
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 168/535 (31%), Positives = 261/535 (48%), Gaps = 116/535 (21%)
Query: 9 SRLWKKCTNL--------RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
S + +KC +L LKQI A +G + + + V + +++A +
Sbjct: 31 SFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQ 90
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLL 119
+F +I P+ F +NT+IRG A+S+NP AV L++QM S I P
Sbjct: 91 IFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILP---------------- 134
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK-MDVVAWSSLT 178
D +T LF AK MDV +
Sbjct: 135 -----------------------------------DTHTFPFLFKAVAKLMDVSLGEGIH 159
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
+ R G FD + N ++ Y+ G E A ++F + RD V+WN+
Sbjct: 160 SVVVRNG--------FDSLRFVQ----NSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNS 207
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
+I+G+ L GM +AL ++ EM S G PD TM+SLL+AC +LG L +G++VH ++ +
Sbjct: 208 VINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKV- 266
Query: 299 SGVAKVLHG-NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
G+ + H NAL+D+Y+KCG+ A +VF M +R V +W++LI GLA +G E++ +
Sbjct: 267 -GLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKL 325
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------- 410
F E++R ++P+EITFVGVL ACSH G ++EG YF+ M++EY I P I H+G
Sbjct: 326 FGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLC 385
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
+HG +ELG +A + + + SGD+VL
Sbjct: 386 RAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVL 445
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
LSN+YAS W V+ VRK+M +KK PG SL+E ++ + +++ + P S
Sbjct: 446 LSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVY-EFIMGDRSHPQS 499
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 199/338 (58%), Gaps = 43/338 (12%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
Y + G LS+AR +FDEMP ++++ W M++GY GE++KA ELF P +DVV W AMI
Sbjct: 2 YCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMI 61
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+GYV +A+ +F+EM+ +PD +++LLT CA +G LE G +H + +
Sbjct: 62 NGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIP 121
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
V V+ G +LI+MY+KCG IE+A+ +F G+R++D +TW+++I GLA +G +++ +F +
Sbjct: 122 VDAVV-GTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSK 180
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M++++ P E+TF+GVL ACSH G VEEG+++F M YNIEP + HYG
Sbjct: 181 MKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAG 240
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
++ +V++G ++L+ + +S + L
Sbjct: 241 QLDEAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVKIESRDSSVHTL 300
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
L+NIYAS G W V +VR+ M D +KK PGCS IE D
Sbjct: 301 LANIYASAGRWVDVNRVRREMKDLGVKKVPGCSSIEVD 338
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 133/285 (46%), Gaps = 20/285 (7%)
Query: 50 VIPGAINY-----AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN 104
++ G +NY A ++F + D ++ +I G Q + +AV L+ +M+ +KP+
Sbjct: 29 MVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQIQRVKPD 88
Query: 105 KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD 164
KF +L C ++ G +HG I + G + V SLI ++ CG + A +F
Sbjct: 89 KFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIEKALRIFC 148
Query: 165 GDAKMDVVAWSSLTAGYARRGELSMARSLFDEM----PVRDLVSWNVMITGYAKQGEMEK 220
G + D W+S+ G A G+ S A LF +M + D V++ +++ + G +E+
Sbjct: 149 GLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAIPDEVTFIGVLSACSHGGLVEE 208
Query: 221 ANELFNEV-------PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
E FN + PK + + +I G +A E+ +++ + S
Sbjct: 209 GREFFNSMTSIYNIEPKLE--HYGCLIDLLGRAGQLDEAEELIKKIVNANNEIIVPLYGS 266
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
LL+AC ++++G++V L+ + S + V L ++YA G
Sbjct: 267 LLSACRIYKNVQMGERVAEQLVKIESRDSSV--HTLLANIYASAG 309
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/472 (32%), Positives = 243/472 (51%), Gaps = 81/472 (17%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
G+ V I+ A+K+F+++ E D+ + +I G + L A E ++ P
Sbjct: 272 GAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQA------REILNLMP--- 322
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
Y+N+ + ++I + G ++ A+ +F
Sbjct: 323 -------------YKNIA-----------------AQTAMINGYLQSGRMDEANEIFSQI 352
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+ D V W+S+ GYA G A LF EM +D+VSWN MI YA+ G+M+KA E+FN
Sbjct: 353 SVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFN 412
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
E+ +R+VVSWN++I+GYV G+ +AL F M+ GE+PD T++ L A A+L L V
Sbjct: 413 EMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNV 472
Query: 287 GKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
G ++H L + +G L NA++ MYAK G + A VF ++++DV +W++LI G
Sbjct: 473 GVQLHH--LTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGY 530
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
A +G +E++ +F M + P E+TF G+L AC+H G V++G FK M + Y+I+P
Sbjct: 531 ALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQ 590
Query: 406 IRHYG---------------------------------------VHGDVELGRLANKRLL 426
HY +H ++EL + + +RLL
Sbjct: 591 SEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLL 650
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + +YVLLSN++A G W+ VE+VR LM ++ +KQPGCS IE D++
Sbjct: 651 ALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIEIDNQ 702
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 194/394 (49%), Gaps = 64/394 (16%)
Query: 44 IYSGSVVIP-----GAINYAHKMFVKITE-PDTFMYNTIIRGSAQSQNPLDAVFLYTQME 97
IYS +++I G + A ++F + + DT N +I G A+ + +A L+ +M
Sbjct: 108 IYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEM- 166
Query: 98 KCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEF-------NRFVRNSLIYFH 150
+ N +++ +L G+ +GK+ + G +F N N ++ +
Sbjct: 167 ---LVKNVVSWNSILS----------GYTKNGKM-QLGLQFFEAMGERNVVSWNLMVDGY 212
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMIT 210
GDL++A + F +VV+W ++ +G+A G ++ AR+LF+EMP ++LVSWN MI
Sbjct: 213 VGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIG 272
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM--RSVGERP-- 266
Y ++ +++ A +LF E+P++D VSW AMI+GYV G QA E+ M +++ +
Sbjct: 273 AYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAM 332
Query: 267 -----------------------DDVTMLSLLTACADLGDLEVGKKVHCTLL--DMTSGV 301
D V S++T A G + ++ ++ DM S
Sbjct: 333 INGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVS-- 390
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
N +I YA+ G +++A+E+F M++R+V +W++LI G +G E++ F M
Sbjct: 391 -----WNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
++ +P + T V L A ++ + G + L
Sbjct: 446 KQQGEKPDQTTIVCCLRASANLAALNVGVQLHHL 479
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 154/296 (52%), Gaps = 22/296 (7%)
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E N NS+I +A G + A LFD + ++V+W+S+ AGY + A LFD
Sbjct: 43 ERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDR 102
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEM 255
M RD+ SW +MIT Y + GE+EKA ELFN +P K+D V NA+I+GY + ++A ++
Sbjct: 103 MFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKL 162
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
F+EM + V+ S+L+ G +++G + + G V+ N ++D Y
Sbjct: 163 FDEMLV----KNVVSWNSILSGYTKNGKMQLGLQFFEAM-----GERNVVSWNLMVDGYV 213
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE--ITF 373
G ++ A F + +V +W T++ G A +G E+ +F EM PT+ +++
Sbjct: 214 GVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEM------PTKNLVSW 267
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKR-LLNM 428
++ A ++++ K F M ++ ++ ++G V +G+L R +LN+
Sbjct: 268 NAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAM---INGYVRVGKLLQAREILNL 320
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 157/329 (47%), Gaps = 17/329 (5%)
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
F +N I G + A +F + ++V ++S+ + YA+ G ++ AR LFD MP R
Sbjct: 16 FTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQR 75
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
+LVSWN MI GY +E A LF+ + KRD+ SW MI+ Y G ++A E+F +
Sbjct: 76 NLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLL- 134
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
++ D V +L+ A KK+ +L V V+ N+++ Y K G +
Sbjct: 135 --PDKQDTVCRNALIAGYAKKRLFREAKKLFDEML-----VKNVVSWNSILSGYTKNGKM 187
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ ++ F M +R+V +W+ ++ G G + + F+++ P +++V +L
Sbjct: 188 QLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP----TPNVVSWVTMLSGF 243
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGRLANKRLLNMRKDESGDYVL 438
+H G++ E + F M + + N I Y ++ A K + M + +S +
Sbjct: 244 AHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQID---DAYKLFMEMPEKDSVSWTA 300
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
+ N Y G+ + ++ LM +I Q
Sbjct: 301 MINGYVRVGKLLQAREILNLMPYKNIAAQ 329
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/411 (24%), Positives = 186/411 (45%), Gaps = 88/411 (21%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQ--------------------SQNPLDAVFL 92
G I A +F+++TE + YN++I A+ S N + A +L
Sbjct: 29 GRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYL 88
Query: 93 YTQMEKCS-------IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF---- 141
+ ++ + + K + ++++ ++ TR+ G++ K FN
Sbjct: 89 HNELVEDAARLFDRMFKRDIYSWTLMITCYTRI----------GELEKARELFNLLPDKQ 138
Query: 142 ---VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
RN+LI +A A LFD +VV+W+S+ +GY + G++ + F+ M
Sbjct: 139 DTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMG 198
Query: 199 VRDLVSWNVMITGY-------------------------------AKQGEMEKANELFNE 227
R++VSWN+M+ GY A G M +A LFNE
Sbjct: 199 ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNE 258
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P +++VSWNAMI YV A ++F EM D V+ +++ +G L
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEM----PEKDSVSWTAMINGYVRVGKLLQA 314
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
+++ L+ + A+ A+I+ Y + G ++ A E+F + RD W+++I G A
Sbjct: 315 REI-LNLMPYKNIAAQT----AMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAH 369
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
G +E++ +F+EM V +++ ++ A + AG++++ + F M++
Sbjct: 370 CGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQE 416
>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
Length = 563
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 210/372 (56%), Gaps = 44/372 (11%)
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMIT 210
A CG++ +A LFD ++V+W+++ +GY L AR LF+ MP +++V+ MIT
Sbjct: 152 ARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEEARKLFEAMPEKNVVACTAMIT 211
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
GY K+G+++ A LF+ + +DV+SWNA+ISGYV G+ ++A +++ M G +PD T
Sbjct: 212 GYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQAT 271
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLD--MTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
+++LLTAC+ L L G+ H ++ + S ++ NAL+ MY+KCG+++ + VF+
Sbjct: 272 LIALLTACSSLALLRQGRSTHAVVIKAMLESSISIC---NALMTMYSKCGNVDESELVFM 328
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
++ +D+ +W+T+I A HG ++ IA+F EM+ + P +ITF+ +L AC HAG+V+E
Sbjct: 329 SLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDE 388
Query: 389 GKKYFKLMRDEYNIEPNIRHYG-------------------------------------- 410
K F LM +Y I P HY
Sbjct: 389 SLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEMPSEAEKNVWGTLLCAS 448
Query: 411 -VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469
HG+V+LG LA K L+ + SG YV+LSNIYA+ G W V +VR M + +KKQPG
Sbjct: 449 QTHGNVQLGELAAKMLVLSDFESSGAYVMLSNIYAAAGMWGEVNRVRSQMKEKGVKKQPG 508
Query: 470 CSLIEADDKAFL 481
S E DK +
Sbjct: 509 HSWTEIADKVHM 520
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 178/393 (45%), Gaps = 64/393 (16%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG-ELSMARSLFDEMPVRDL 202
N I A GD+ A +FD + D V+W++L R G +L ARSLFD+MP R++
Sbjct: 20 NQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNV 79
Query: 203 V-------------------------------SWNVMITGYAKQGEMEKANELFNEVPKR 231
+ SWN M+ G + G ME A LF+++P+R
Sbjct: 80 ISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQMPER 139
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
+VVS+ M+ G CG A E+F+ M + + V+ ++++ D LE +K+
Sbjct: 140 NVVSYTTMVDGLARCGEVASARELFDAMPT----RNLVSWAAMISGYVDNNMLEEARKLF 195
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ + V+ A+I Y K G ++ A +F G+R +DV +W+ +I G +G
Sbjct: 196 EAMPE-----KNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLG 250
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR---- 407
EE+ ++ M R ++P + T + +L ACS + +G+ ++ +E +I
Sbjct: 251 EEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAM-LESSISICNA 309
Query: 408 ---HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
Y G+V+ L L +S D V + I A+ + R +KV L + ++
Sbjct: 310 LMTMYSKCGNVDESELVFMSL------KSQDIVSWNTIIAAYAQHGRYQKVIALFHEMEL 363
Query: 465 KKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLD 497
C LI D + +L L ++G +D
Sbjct: 364 -----CGLIPND----ITFLSMLSACGHAGRVD 387
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 145/319 (45%), Gaps = 30/319 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F I D +N II G + +A LY M + IKP++ T +L
Sbjct: 217 GDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALL 276
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC+ L G H ++K E + + N+L+ ++ CG+++ + ++F D+V
Sbjct: 277 TACSSLALLRQGRSTHAVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIV 336
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNEV 228
+W+++ A YA+ G +LF EM + L+ ++ M++ G ++++ +LF+ +
Sbjct: 337 SWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLM 396
Query: 229 PKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+ +S + ++ G ++A +EM S E+ +LL A G+
Sbjct: 397 FSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEMPSEAEKN---VWGTLLCASQTHGN 453
Query: 284 LEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS----- 336
+++G+ L+ D S A V+ N +YA G V M+++ V
Sbjct: 454 VQLGELAAKMLVLSDFESSGAYVMLSN----IYAAAGMWGEVNRVRSQMKEKGVKKQPGH 509
Query: 337 TWSTL-------IGGLAFH 348
+W+ + +GG A H
Sbjct: 510 SWTEIADKVHMFVGGDASH 528
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 20/225 (8%)
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN-KQALEMFEE 258
R LV N IT A+ G++ A +F+ +P+RD VSWNA+++ G + A +F++
Sbjct: 14 RLLVRDNQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDD 73
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M S + ++ S++ C GDL + V NA++ + G
Sbjct: 74 MPS----RNVISWNSIIAGCLAHGDLAAASAY-----FARAPRRNVASWNAMLAGLVRLG 124
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE--ITFVGV 376
S+E A +F M +R+V +++T++ GLA G + +F M PT +++ +
Sbjct: 125 SMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAM------PTRNLVSWAAM 178
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGR 419
+ +EE +K F+ M ++ + I Y GD++ R
Sbjct: 179 ISGYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNAR 223
>gi|115471447|ref|NP_001059322.1| Os07g0260000 [Oryza sativa Japonica Group]
gi|113610858|dbj|BAF21236.1| Os07g0260000 [Oryza sativa Japonica Group]
Length = 750
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 155/451 (34%), Positives = 232/451 (51%), Gaps = 83/451 (18%)
Query: 101 IKPNKFTFSFVLKACTRL-LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC------ 153
+ PN FTF+F+L+AC L L R G CVHG+IV+ GF + FV+N+L+ + C
Sbjct: 107 VPPNGFTFTFLLRACALLGLPRPCG-CVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGG 165
Query: 154 ------------------------------GDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
GD A F+ + +VV+W+++ AG+AR
Sbjct: 166 GVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFAR 225
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA---------------------- 221
G++ AR++FD MP R+ VSWN+MI+GYA G++E A
Sbjct: 226 MGDMVTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAY 285
Query: 222 ---------NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTM 271
NELF+ +P +++VSWNAMI+GY +AL F+ M G RPD+ T+
Sbjct: 286 AKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATL 345
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGNALIDMYAKCGSIERAIEVF 327
+S+++ACA LG +E +C + G + V GNALIDM+AKCG + RA +F
Sbjct: 346 VSVVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIF 400
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
M R + TW+T+I G AF+G +++ ++ M R V+ + F+ L AC+H G ++
Sbjct: 401 YKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQ 460
Query: 388 EGKKYFKLMRDEYNIEPNIRHYG----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
EG F M + YNI+P + HYG + G EL +K++ + S VL+SN
Sbjct: 461 EGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITELEPFNSSYQVLVSNCS 520
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
A G W+ V R M + I+K PG S I+
Sbjct: 521 ALEGRWDGVIDARTSMRNWGIEKVPGSSSIQ 551
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 192/351 (54%), Gaps = 40/351 (11%)
Query: 165 GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANEL 224
G D SSL Y G ++ ARS+FDEM VRD+V+WNVMI GY K G+ A EL
Sbjct: 107 GHVASDAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHAREL 166
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F+ +P+R+VVSW +I GY ++A+E+F M+ G D V +LS+L AC DLG +
Sbjct: 167 FDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAV 226
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
++G+ VH + ++ N++IDMY KCG IE+A+EVF GM ++ V TW+TLI G
Sbjct: 227 DLGEWVH-RFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAG 285
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
A HG +++ MF M+R + P +TF+ +L ACSH G + G+ YF +M +Y I+P
Sbjct: 286 FALHGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKP 345
Query: 405 NIRHYG---------------------------------------VHGDVELGRLANKRL 425
+ HYG HGD LG A L
Sbjct: 346 RVEHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQALLHL 405
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ + + SG+Y+LLSNI+A + W V K+RK M + ++ PG S IE D
Sbjct: 406 IELEPNNSGNYILLSNIFAEQERWGDVSKLRKAMRERGLRNVPGASSIEVD 456
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 121/273 (44%), Gaps = 50/273 (18%)
Query: 36 DSSALRELIYSGSVVIPGAIN-----YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAV 90
D A+R+++ + +V+I G + +A ++F + E + + T+I G AQ + P AV
Sbjct: 137 DEMAVRDVV-AWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAV 195
Query: 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150
++ +M+ I+ + VL AC L ++G VH +V+ G + NS+I +
Sbjct: 196 EVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDMY 255
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP------------ 198
CG + A +F+G + VV W++L AG+A G A +F M
Sbjct: 256 MKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFL 315
Query: 199 ----------VRDLVSW--NVMITGY----------------AKQGEMEKANELFNEVP- 229
+ DL W N+M++ Y + G +++A +L +P
Sbjct: 316 AILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMVDLLGRAGCLKEAQDLVKNMPL 375
Query: 230 KRDVVSWNAMISG---YVLCGMNKQALEMFEEM 259
K + W A+++ + G+ +QAL E+
Sbjct: 376 KANAAIWGALLAAARTHGDAGLGEQALLHLIEL 408
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/492 (30%), Positives = 239/492 (48%), Gaps = 76/492 (15%)
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+T P ++N ++ S P + +FLY QM + N FTF++ LKAC L G
Sbjct: 23 LTNPKPHIFNPLLGSLVNSIFPENGLFLYNQMLRYPSSHNHFTFTYALKACCFLHQTQKG 82
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H ++K G + F++NSL++F+ GD+++AS++FD DVV+W+S+ +G ++
Sbjct: 83 LEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKL 142
Query: 185 GELSMARSLFDEMPVR------------------------------------DLVSWNVM 208
G A S F M VR +++ N +
Sbjct: 143 GFEKEALSKFLSMNVRPNSTTLVTALSACSSLRCLKLGKAIHGLRMRTLNEENVILENAL 202
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PD 267
+ Y + + A LF ++PKRDVVSW MI GY G+ ++A+ +F+ M VGE P+
Sbjct: 203 LDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPN 262
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+ T++++L+AC+ + L +G+ VH + + GNALI+MY KCG++E AI +F
Sbjct: 263 EATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEMAILIF 322
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
+ +D+ +WST+I GLA +G +++ +F M V P +ITF+G+L ACSH G +
Sbjct: 323 KAIEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGVSPDDITFLGLLSACSHGGLIN 382
Query: 388 EGKKYFKLMRDEYNIEPNIRHYG------------------------------------- 410
+G F+ M+D YNI P +RHY
Sbjct: 383 QGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVWGALLHA 442
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
+HG+ + + LL + G + LLSN YA WN VR M +KK
Sbjct: 443 CQLHGNEKKYEKVREWLLGSKGVTVGTFALLSNTYACCDRWNDANDVRVAMRSRGLKKMA 502
Query: 469 GCSLIEADDKAF 480
G S IE D +
Sbjct: 503 GRSWIEMVDSTY 514
>gi|297828245|ref|XP_002882005.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
gi|297327844|gb|EFH58264.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
Length = 408
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 216/392 (55%), Gaps = 48/392 (12%)
Query: 133 KYGFEFNRFVRNSL------IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
K G EF+R SL + C + + AS LF + D+++W+S+ GY + G
Sbjct: 4 KRGSEFSRATDVSLSHASGTMLLKCRC-NCSIASKLFAEMPEKDLISWNSMIDGYVKHGR 62
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ A+ LFD MP RD+V+ MI GYAK G + +A LF+++P RDVV++N+M++GYV
Sbjct: 63 IEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQN 122
Query: 247 GMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
+ +ALE+F +M PD+ T++ +L+A A LG L +H +++ + L
Sbjct: 123 KCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKL 182
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
G ALIDMY+KCGSI+ A+ VF G+ ++ + W+ +IGGLA HG E + M +++RL
Sbjct: 183 -GVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLS 241
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------- 411
+ P +ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 242 IIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELA 301
Query: 412 -------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
H + E G L K L+ YVLLSN+YAS
Sbjct: 302 KNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASF 361
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G W V +VR +M + I+K PGCS IE D +
Sbjct: 362 GMWKDVRRVRTMMKERKIEKIPGCSWIELDGR 393
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 140/320 (43%), Gaps = 26/320 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G ++ A +F ++ D YN+++ G Q++ ++A+ ++ MEK S + P++ T +
Sbjct: 92 GFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVII 151
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + +H IV+ F + +LI ++ CG + A ++F+G +
Sbjct: 152 LSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI 211
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY---AKQGEMEKANELFNEV 228
W+++ G A G A ++ ++ ++ ++ G + K L E+
Sbjct: 212 DHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFEL 271
Query: 229 PKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+R + + M+ G + A + EEM P+DV + LTAC+
Sbjct: 272 MRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPI---EPNDVIWRTFLTACSHHK 328
Query: 283 DLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS---- 336
+ E G+ V H L + + VL L +MYA G + V M++R +
Sbjct: 329 EFETGELVAKHLILQAGYNPSSYVL----LSNMYASFGMWKDVRRVRTMMKERKIEKIPG 384
Query: 337 -TWSTLIGGLAFHGFAEESI 355
+W L G + H F +SI
Sbjct: 385 CSWIELDGRV--HEFFVDSI 402
>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/465 (32%), Positives = 246/465 (52%), Gaps = 48/465 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F ++ E + +NT++ S DA L+ M + +++ +L
Sbjct: 112 GRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPV----RDAGSWNILL 167
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A L R+ K+ E N +++ A G +N A LFDG + +VV
Sbjct: 168 AA----LVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVV 223
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+W+++ +GYAR + A LF +MP RD+ SWN+MITG+ + +E+A ELF+++P+R+
Sbjct: 224 SWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRN 283
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VV+W M++GY+ ++ AL++F M G RP+ VT L + AC++L L G++VH
Sbjct: 284 VVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVH- 342
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
++ T + L+++YAKCG I A +VF +++DV +W+ +I A HG
Sbjct: 343 QMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGL 402
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM--------RDEY---- 400
E+I ++ +MQ +P ++T+VG+L ACSH+G V+EG + F+ M RDE+
Sbjct: 403 EAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCL 462
Query: 401 --------------------NIEPNIRHYGV-------HGDVELGRLANKRLLNMRKDES 433
+EP+ + HG+ +G LA + LL + +
Sbjct: 463 IDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNA 522
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G Y LL NIYAS G+W K+R M+D +KKQPGCS IE +K
Sbjct: 523 GTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVANK 567
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 35/281 (12%)
Query: 145 SLIYFHANCGDLNTASVLFD-GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
+L+ +A G L+ A LFD DA+ +VV W++L +GYAR G + A +LF MP R++V
Sbjct: 71 ALVAAYACQGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVV 130
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN M+ Y G + A LFN +P RD SWN +++ V G +A ++F+ M
Sbjct: 131 SWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVRSGNIDKARKLFDRM---- 186
Query: 264 ERPDDVTM--LSLLTACADLGDLEVGKKVHCTLLD--------MTSGVAK---------- 303
P+ M +++ A G + + + + + M SG A+
Sbjct: 187 --PERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARNHMIDEAHDL 244
Query: 304 --------VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
+ N +I + + ++ERA E+F M R+V TW+T++ G +E ++
Sbjct: 245 FMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETAL 304
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+F M +RP ++TF+G + ACS+ + EG++ +++
Sbjct: 305 QLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMI 345
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 158 TASVLFDGDAKMDVVAW----SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYA 213
A+ +D A +DV + A A G +S AR LFD P RD+VSW ++ YA
Sbjct: 18 AAAFFYDSAAAVDVSNHVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYA 77
Query: 214 KQGEMEKANELFNEV-PKRDVVSWNAMISGYVLCGMNKQALEMFEEM--RSVGERPDDVT 270
QG + A LF+ +R+VV+W A++SGY G +A +F M R+V T
Sbjct: 78 CQGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWN---T 134
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
ML T+ +GD CTL + V N L+ + G+I++A ++F M
Sbjct: 135 MLEAYTSSGRVGDA-------CTLFNGMP-VRDAGSWNILLAALVRSGNIDKARKLFDRM 186
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
+R+V W+T++ G+A G E+ A+F M V
Sbjct: 187 PERNVMAWTTMVAGIARSGSVNEARALFDGMPERNV 222
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
A G + A +F DRDV +W+ L+ A G ++ A+F R R +T+
Sbjct: 46 AAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALF---DRPDARRNVVTWT 102
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL--NMRKDE 432
+L + AG+V+E + F M + + N + GR+ + L M +
Sbjct: 103 ALLSGYARAGRVDEAEALFGRMPERNVVSWNTM---LEAYTSSGRVGDACTLFNGMPVRD 159
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+G + +L G ++K RKL D
Sbjct: 160 AGSWNILLAALVRSGN---IDKARKLFD 184
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 160/541 (29%), Positives = 272/541 (50%), Gaps = 84/541 (15%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD--TFMYN 74
+L ++++ A + +G + D A +LI S + + + ++F P TF+ N
Sbjct: 70 HLHHVQELHAQLLKHGLHLDPLAASKLI--SSYALQRRLPASRRIFASFPNPQATTFLPN 127
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
T++R A + P AV L++ M + + FT+SF++KA + + VH +VK
Sbjct: 128 TLLRAYALNALPHAAVSLFSAMPQ----RDSFTYSFLIKALSSSGLTPLR-AVHSHVVKL 182
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
G + +V N+LI ++ G AS +F+ + D V+W+S A R+GE++ AR +F
Sbjct: 183 GSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMF 242
Query: 195 DEMPVRDLVSWNV-------------------------------MITGYAKQGEMEKANE 223
DEMP +D VSWN +++GY K+G++E A
Sbjct: 243 DEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARV 302
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+F+++P +++V+W M+S G+ ++A +F +M+ D ++S+L ACA+ G
Sbjct: 303 IFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGS 362
Query: 284 LEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTL 341
L +GK++H + T + + H NA+IDM+ KCG + RA VF + ++D +W+T+
Sbjct: 363 LALGKRIHRYV--RTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTI 420
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
IGG A HG ++++ F +M+ RP +T + VL AC+H G VEEG+++F M +Y
Sbjct: 421 IGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYG 480
Query: 402 IEPNIRHYG---------------------------------------VHGDVELGRLAN 422
I P I HYG +H +VE +A
Sbjct: 481 IVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAV 540
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQ 482
L ++ +G+Y +LSNIYA G+W+ + K R M + +K G S IE D+ AF +
Sbjct: 541 NELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWIELDE-AFHE 599
Query: 483 Y 483
+
Sbjct: 600 F 600
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/472 (32%), Positives = 245/472 (51%), Gaps = 62/472 (13%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + + ++F + + +N++I G + + +D + Y Q P + T S+
Sbjct: 20 GCFDESKRLFGLMPTKNVVSWNSMIAGCIEDER-IDEAWQYFQ-----AMPQRNTASWNA 73
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF------HANCGDLNTASVLFDGD 166
G + ++ + F R ++I + +A G++ A LF+
Sbjct: 74 MIS--------GLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCM 125
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+ +VV+W+ + +GY G+ A +LF++MP +++V+ MITGY K+G+ +KA LF+
Sbjct: 126 PQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFD 185
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
++P RD+ SWNAMI+GY G ++AL++ +M +G +PD T++S+LTAC+ L L+
Sbjct: 186 QIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQE 245
Query: 287 GKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
G+K H +L SG +++ NALI MY KCGSI + F + DV +W+ +I
Sbjct: 246 GRKTHVLVL--KSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAF 303
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
A HGF + ++A F EM+ +V P ITF+ +L AC HAGKV E +F M + Y I P
Sbjct: 304 ARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPR 363
Query: 406 IRHYG---------------------------------------VHGDVELGRLANKRLL 426
H+ VH +V+LG LA K+++
Sbjct: 364 PEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIV 423
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ SG YV+LSNIYA+ G W V +VR LM + +KKQP S +E D+K
Sbjct: 424 ELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNK 475
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
D V+W+S+ GY + G ++ LF MP +++VSWN MI G + +++A + F +P
Sbjct: 5 DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMP 64
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
+R+ SWNAMISG V ++A +FEEM R + ++ +++ A +G++E +
Sbjct: 65 QRNTASWNAMISGLVRYDRVEEASRLFEEM----PRRNVISYTAMVDGYAKIGEIEQARA 120
Query: 290 V-HC-------TLLDMTSGVAK------------------VLHGNALIDMYAKCGSIERA 323
+ +C + M SG + ++ A+I Y K G ++A
Sbjct: 121 LFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKA 180
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+F + RD+++W+ +I G A +G EE++ + +M ++ ++P T + VL ACS
Sbjct: 181 KILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSL 240
Query: 384 GKVEEGKKYFKLM 396
++EG+K L+
Sbjct: 241 ASLQEGRKTHVLV 253
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/451 (32%), Positives = 222/451 (49%), Gaps = 84/451 (18%)
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY----RNMGFCV 127
+++ +IR A S P A+ LY + + + P T +LK+ R + V
Sbjct: 55 LHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAV 114
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANC-GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
H V+ G V N+LI HA G L A +L A +D
Sbjct: 115 HAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDAS-------------- 160
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
++N +IT +A+ G + A LF+E+P+R+ VSW+AM++GYV
Sbjct: 161 -----------------TFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQA 203
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVA 302
G ++AL +F +M++ G RPDD ++ +L ACA LG LE GK VH L + MT
Sbjct: 204 GDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMT---- 259
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
V G AL+DMYAKCG ++ +EVF GM+D++V W+T+I GLA HG +S+ +F +M+
Sbjct: 260 -VFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQME 318
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
V+P +I F+G L AC+H G V++G++ F M + Y I+P I HYG
Sbjct: 319 SSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLL 378
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H +VEL K + + D+SG YVLL NIY
Sbjct: 379 SEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIY 438
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
++ G ++R LM + ++K PGCS +E
Sbjct: 439 SASGRHASAREIRNLMREKGVEKTPGCSNVE 469
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 142/311 (45%), Gaps = 20/311 (6%)
Query: 36 DSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQ 95
D+S LI + + G + A +F ++ E + ++ ++ G Q+ + +A+ +++Q
Sbjct: 158 DASTFNTLITAHARA--GRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQ 215
Query: 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
M+ ++P+ VL AC +L G VHG + F+ +L+ +A CG+
Sbjct: 216 MQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGE 275
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY--- 212
+ +F+G +V+AW+++ G A G S + +LF +M + ++ G
Sbjct: 276 VQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCA 335
Query: 213 -AKQGEMEKANELFNEVP-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
G ++K ELFN + K + + M+ G+ +A +M E+M +P
Sbjct: 336 CTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPM---KP 392
Query: 267 DDVTMLSLLTACADLGDLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
D + +L+ C ++E+ + V H L+ A VL GN +Y+ G A
Sbjct: 393 DALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGN----IYSASGRHASAR 448
Query: 325 EVFLGMRDRDV 335
E+ MR++ V
Sbjct: 449 EIRNLMREKGV 459
>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 907
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 156/502 (31%), Positives = 257/502 (51%), Gaps = 68/502 (13%)
Query: 44 IYSGSVVIPGAIN-----YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME- 97
+ S ++++ G +N A ++F KI +P+ + T++ G A+ ++A L+ +M
Sbjct: 204 VVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPC 263
Query: 98 KCSIKPNKFTFSFV----------------LKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
K + N ++V K C G+ GK+ + +N+
Sbjct: 264 KNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQM 323
Query: 142 ------VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
+ +L+ G ++ AS +F K D + W+S+ AGY + G +S A +LF
Sbjct: 324 PYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFR 383
Query: 196 EMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
+MPV++ VSWN MI+GYA+ GEM++A E+F + R+V+SWN++I+G++ G+ AL+
Sbjct: 384 QMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKS 443
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
M G++PD T L++CA+L L+VGK++H +L + + + NALI MYA
Sbjct: 444 LVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILK-SGYINDLFVSNALIAMYA 502
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
KCG ++ A +VF + D+ +W++LI G A +G+A E+ F +M P E+TF+G
Sbjct: 503 KCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIG 562
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------- 410
+L ACSHAG +G FK M + + IEP HY
Sbjct: 563 MLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVK 622
Query: 411 --------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
VH ++ELG++A RLL + + +Y+ LSN++A G W VE++R
Sbjct: 623 ANAGLWGSLLAACRVHKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGRWEDVERLR 682
Query: 457 KLMDDSDIKKQPGCSLIEADDK 478
LM + K PGCS IE ++
Sbjct: 683 VLMRERRAGKLPGCSWIEVQNQ 704
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 111/432 (25%), Positives = 205/432 (47%), Gaps = 34/432 (7%)
Query: 31 NGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAV 90
N FN + +++IY G G I+ A ++F + + YN+++ A++ DA
Sbjct: 16 NVFNQN----KKIIYLGK---QGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDAR 68
Query: 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150
L+ +M + N +++ ++ L+ NM H K+ E + F +I +
Sbjct: 69 QLFDKMSQ----RNLVSWNTMIAG---YLHNNMVEEAH-KLFDLMAERDNFSWALMITCY 120
Query: 151 ANCGDLNTASVLFD-GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMI 209
G L A LF+ K+D W+++ AGYA++G A +F++MPV+DLVS+N M+
Sbjct: 121 TRKGMLEKARELFELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSML 180
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
GY + G+M A + F + +R+VVSWN M++G+V A E+FE++ P+ V
Sbjct: 181 AGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPD----PNAV 236
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
+ +++L A G + +K L D V+ NA+I Y + I+ A+++F
Sbjct: 237 SWVTMLCGFARHGKIVEARK----LFDRMP-CKNVVSWNAMIAAYVQDLQIDEAVKLFKE 291
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+D +W+T+I G G +E+ ++ +M V G++ G+++E
Sbjct: 292 TPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLI----QNGRIDEA 347
Query: 390 KKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL--NMRKDESGDYVLLSNIYASRG 447
+ F + I N + G + GR++ L M + + + + YA G
Sbjct: 348 SQVFSQLNKRDAICWNSM---IAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAG 404
Query: 448 EWNRVEKVRKLM 459
E +R ++ + M
Sbjct: 405 EMDRATEIFEAM 416
>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 156/494 (31%), Positives = 244/494 (49%), Gaps = 74/494 (14%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF--LYTQMEKCSIKPNKFTFSFVLKAC 115
A +FVK+ D + T+I G +++ + M PN+FTF V++AC
Sbjct: 183 ALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRAC 242
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC---------------------- 153
RL ++G VHG ++K G E++ + +L+ F+ C
Sbjct: 243 GRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALN 302
Query: 154 ---------GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS 204
G + A ++F+G +M+ V+++ + GYA G++ ++ LF++MP R + S
Sbjct: 303 SLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFS 362
Query: 205 WNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
N MI+ Y++ GE++KA ELF E ++D V+WN+MISGY+ G ++AL+++ M +
Sbjct: 363 SNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLS 422
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
+ T +L AC+ LG L G+ +H L+ T + V G +LIDMY+KCGSI A
Sbjct: 423 IQQTQSTFSALFHACSCLGSLHQGQLLHAHLIK-TPFESNVYVGTSLIDMYSKCGSIMEA 481
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
F+ + +V+ W+ LI G A+HG E+I++F M + P TFVGVL ACS A
Sbjct: 482 QTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRA 541
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG-----------------------------VHG- 413
G V EG K F M Y++ P + HY V G
Sbjct: 542 GLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGA 601
Query: 414 ---------DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
D+E+G +++ + YV+LSNIYA G W VRK++ +
Sbjct: 602 LLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKV 661
Query: 465 KKQPGCSLIEADDK 478
KK PGCS IE ++K
Sbjct: 662 KKDPGCSWIELNNK 675
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/399 (26%), Positives = 189/399 (47%), Gaps = 42/399 (10%)
Query: 25 QALVTINGFNSDSSALRELIYSGSVVIPGA----INYAHKMFVKITEPDTFMYNTIIRGS 80
Q L + + S L E+I + + A ++ A ++F ++ + +NT+I
Sbjct: 14 QRLKEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSY 73
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
++ +A+FL M + +K ++ TFS VL C RL G +H ++K G E
Sbjct: 74 SKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFE 133
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
V ++L+YF+A+C ++ A +FD + + V WS + GY + A S+F +MP R
Sbjct: 134 LVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRR 193
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D+V+W +I+G++K G+ CG +ALE+F M
Sbjct: 194 DVVAWTTLISGFSKNGDG---------------------------CG---KALEIFRLMM 223
Query: 261 SVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
GE P++ T ++ AC LG L VG+ VH L+ + G AL++ Y +C +
Sbjct: 224 RSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSI-GGALVEFYCECEA 282
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I+ A+ V G+ + ++ ++LI GL G E++ +F M + + G V
Sbjct: 283 IDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAV- 341
Query: 380 CSHAGKVEEGKKYFKLM--RDEYNIEPNIRHYGVHGDVE 416
G++++ K+ F+ M R ++ I Y +G+++
Sbjct: 342 ---GGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEID 377
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 11/247 (4%)
Query: 53 GAINYAHKMFVKI-TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV 111
G I+ A ++F + E D +N++I G S P +A+ LY M + SI+ + TFS +
Sbjct: 374 GEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSAL 433
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
AC+ L + G +H ++K FE N +V SLI ++ CG + A F +V
Sbjct: 434 FHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNV 493
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELFNE 227
AW++L G+A G S A SLFD M + L G ++ G + + ++F+
Sbjct: 494 AAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHS 553
Query: 228 VPKRDVVSWNAMISGYV----LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+ + S + Y L G + E E ++ + D V +LL+AC D
Sbjct: 554 MER--CYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMD 611
Query: 284 LEVGKKV 290
LEVG++V
Sbjct: 612 LEVGERV 618
>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 694
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/457 (33%), Positives = 238/457 (52%), Gaps = 50/457 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A ++F +I + + +N ++ G + + +A L+T+M N +++ ++
Sbjct: 243 GRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPD----KNSISWTTMI 298
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFV-RNSLIYFHANCGDLNTASVLFDGDAKMDV 171
A R G K + F+ F + +L++ + ++ A ++FDG D
Sbjct: 299 SALVR-----GGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDA 353
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
V W+++ +GY G L A LF +MP +D+VSWN MI GYA G+M KA +F ++ +R
Sbjct: 354 VCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQR 413
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
+ VSWN++ISG+V G+ +AL+ F MR +R D T L+ACADL L VG++ H
Sbjct: 414 NTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFH 473
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+LL + + GNALI YAKCG I A +VF M D+ +W+ LI G A +G
Sbjct: 474 -SLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHG 532
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
E+I++FREM+ VRP E+TFVGVL ACSHAG ++EG +F M +Y + P HY
Sbjct: 533 TEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSMTKDYALRPVAEHYAC 592
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
VH + EL +LA ++L + +
Sbjct: 593 MVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKNHELAQLAAEKLYELEPHK 652
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469
+ +YVLLSNI A G+W+ + +R + + + K PG
Sbjct: 653 TSNYVLLSNITAEAGKWDEAQNMRVFIKERGVHKTPG 689
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 108/457 (23%), Positives = 182/457 (39%), Gaps = 105/457 (22%)
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR------------ 117
T YN +I G A+ DAV L +M P+ +++ VL TR
Sbjct: 136 TACYNAMISGYAKHGRFDDAVALLREMPA----PDIISWNSVLVGLTRNGEMVRAVKFFD 191
Query: 118 -LLYRNM--------GFCVHGKIVKYGFEF------NRFVRNSLIYFHANCGDLNTASVL 162
+ R+M G+ G + F N +L+ + G + A L
Sbjct: 192 EMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEAREL 251
Query: 163 FDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222
FD +V AW+ + +GY R + A LF EMP ++ +SW MI+ + G++++A
Sbjct: 252 FDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAK 311
Query: 223 ELFNEVP-------------------------------KRDVVSWNAMISGYVLCGMNKQ 251
+L +++P RD V WN MISGYV CGM +
Sbjct: 312 DLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDE 371
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
A+ +F++M P+ DM S N +I
Sbjct: 372 AMVLFQQM------PNK---------------------------DMVS-------WNTMI 391
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
YA G + +A+ +F M R+ +W+++I G +G E++ F M+R R
Sbjct: 392 AGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWS 451
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLM-RDEYNIEPNIRHYGVHGDVELGRLANKRLL--NM 428
T+ L AC+ + G+++ L+ R Y + + + + GR+ R + M
Sbjct: 452 TYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEM 511
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
+ + L + YAS G V + M+D+D++
Sbjct: 512 PAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVR 548
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 135/305 (44%), Gaps = 50/305 (16%)
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
N N+++ A G + A LFD + + V+W+++ A + G ++ AR LFD MP
Sbjct: 41 NTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMP 100
Query: 199 VRDLVSW--------------------------------NVMITGYAKQGEMEKANELFN 226
RD SW N MI+GYAK G + A L
Sbjct: 101 ARDGFSWTLMVSCYARAGELGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLR 160
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
E+P D++SWN+++ G G +A++ F+EM + D V+ +L GD++
Sbjct: 161 EMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPA----RDMVSWNLMLEGYVRAGDVD- 215
Query: 287 GKKVHCTLLDMTSGVAK--VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
+ + +GV V+ L++ Y + G I A E+F + DR+V+ W+ ++ G
Sbjct: 216 ------SAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSG 269
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF-KLMRDEYNIE 403
EE+ +F EM I++ ++ A GK++E K K+ D + +
Sbjct: 270 YLRLSHMEEAYKLFTEMP----DKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAK 325
Query: 404 PNIRH 408
+ H
Sbjct: 326 TALMH 330
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 122/286 (42%), Gaps = 49/286 (17%)
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMIT 210
A G L A LFD + V+++++ + AR G ++ AR LFDE+P R+ VSWN MI
Sbjct: 22 ARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIA 81
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSW--------------------------------NA 238
+ G + A +LF+ +P RD SW NA
Sbjct: 82 ACSDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDALDRMPGDKCTACYNA 141
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV--HCTLLD 296
MISGY G A+ + EM + PD ++ S+L G++ K D
Sbjct: 142 MISGYAKHGRFDDAVALLREMPA----PDIISWNSVLVGLTRNGEMVRAVKFFDEMPARD 197
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
M S N +++ Y + G ++ A +F G+ +V +W TL+ G G E+
Sbjct: 198 MVS-------WNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARE 250
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
+F + V + G L SH +EE K F M D+ +I
Sbjct: 251 LFDRIPDRNVAAWNVMLSGYL-RLSH---MEEAYKLFTEMPDKNSI 292
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 119/258 (46%), Gaps = 22/258 (8%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N +T A+ G++ A LF+ +P R+ VS+NAM+S G A +F+E+ R
Sbjct: 15 NQELTRLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEI----PR 70
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
+ V+ +++ AC+D G + + + + G + L ++ YA+ G + A +
Sbjct: 71 RNTVSWNAMIAACSDHGRVADARDLF-DAMPARDGFSWTL----MVSCYARAGELGLARD 125
Query: 326 VFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
M D+ + ++ +I G A HG ++++A+ REM P I++ VLV + G
Sbjct: 126 ALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMP----APDIISWNSVLVGLTRNG 181
Query: 385 KVEEGKKYFKLM--RDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
++ K+F M RD + + Y GDV+ A + +V L N
Sbjct: 182 EMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVD---SAAGLFAGVPSPNVVSWVTLLNG 238
Query: 443 YASRGEWNRVEKVRKLMD 460
Y G R+ + R+L D
Sbjct: 239 YCRAG---RIGEARELFD 253
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 162/553 (29%), Positives = 277/553 (50%), Gaps = 84/553 (15%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD--TFMYNT 75
L L+++ A + +G + D A +L+ S + + + +F P TF+ NT
Sbjct: 37 LHHLQELHAQLLKHGLHLDPVAASKLL--SSYALHRRLPASRGVFASFPNPHATTFLPNT 94
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
++R A + P +AV +++ M + FT+SF++KA + + VH +VK G
Sbjct: 95 LLRAYALNALPREAVAVFSAMPH----RDSFTYSFLIKALSSAGVAPLR-AVHSHVVKLG 149
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
+ +V N+LI ++ G + AS +F+ + DVV+W+S A R+GE+ AR +FD
Sbjct: 150 SIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFD 209
Query: 196 EM-------------------------------PVRDLVSWNVMITGYAKQGEMEKANEL 224
EM P R++VSW+ +++GY K+G+ME A +
Sbjct: 210 EMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVI 269
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F+++P +++V+W M+S G+ ++A ++F +M+ D ++S+L ACA+ G L
Sbjct: 270 FDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSL 329
Query: 285 EVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTLI 342
+GK++H + T + + H NALIDM+ KCG I RA VF + ++D +W+T+I
Sbjct: 330 ALGKRIHRYV--RTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTII 387
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
GG A HG ++++ F +M+ P +T + VL AC+H G VEEG++YF M +Y +
Sbjct: 388 GGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGV 447
Query: 403 EPNIRHYG---------------------------------------VHGDVELGRLANK 423
P I HYG +H +VE +A
Sbjct: 448 VPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVN 507
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQY 483
L ++ +G+Y +LS+IYA G+W+ + K R M + +K G S IE D+ AF ++
Sbjct: 508 ELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGSSWIELDE-AFHEF 566
Query: 484 LFNLKPKPNSGNL 496
+ P+S +
Sbjct: 567 TVGDRKHPDSDQI 579
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 163/501 (32%), Positives = 246/501 (49%), Gaps = 74/501 (14%)
Query: 19 RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIR 78
+ L QIQA + N S L + G+ + +A +F ++ P+ F +N II+
Sbjct: 25 KQLLQIQAQLITNPPLSLHPNLIAVKLIGACAANANLYHAQLIFAQLPNPNVFSWNAIIK 84
Query: 79 GSAQSQNPLDAVFLYTQMEK--CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
A+ + + + PN++ ++ ++KAC L G VH ++K G
Sbjct: 85 AHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGL 144
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
+ N + SL+ D+ Y + E + A +FDE
Sbjct: 145 DNNIHLGTSLV-------DM------------------------YFKFREPASAGQVFDE 173
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP+RD+VSWN M++GY G++E A +F+++ +RDV+SWNAMI GYV G A+E+F
Sbjct: 174 MPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVF 233
Query: 257 EEMRSVGER-PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
EM+ VG PDDVT++S+L+ACA +G L+ G+ + + G+ L GNALIDMYA
Sbjct: 234 HEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYL-GNALIDMYA 292
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
KCG++E A +F GMR+RDV +WST+I G HG A+E+ + +M V+P E+TF+G
Sbjct: 293 KCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMG 352
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------- 410
+L ACSHAG V++G + F M EY I P + HYG
Sbjct: 353 LLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIE 412
Query: 411 --------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
+H D G + LL + + +G YV ++ AS G +
Sbjct: 413 PNVIVWGALLGGCRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANCW 472
Query: 457 KLMDDSDIKKQPGCSLIEADD 477
M I K PGCS IE +
Sbjct: 473 LRMQHKGIIKDPGCSKIEVHN 493
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 163/540 (30%), Positives = 260/540 (48%), Gaps = 84/540 (15%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
++ K++ V GF S+++ + LI + G + AH +F +++EPD +N++I
Sbjct: 486 VKECKRVHGYVLKLGFGSNTAVVNSLI--AAYFKFGGVESAHNLFDELSEPDVVSWNSMI 543
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
G + + + ++ QM ++ + T VL A + ++G +HG VK F
Sbjct: 544 NGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFS 603
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
N+L+ ++ CG+LN A+ +F +V+W+S A Y R G S A LFDEM
Sbjct: 604 EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM 663
Query: 198 PV--------------------------RDLVSW-------------NVMITGYAKQGEM 218
RD+ S+ N +I YAK G +
Sbjct: 664 QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSV 723
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
E+A +F+++P +D+VSWN MI GY + +ALE+F +M+ +PDD+TM +L AC
Sbjct: 724 EEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK-QFKPDDITMACVLPAC 782
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
A L L+ G+++H +L G LH AL+DMYAKCG + A +F + +D+ +
Sbjct: 783 AGLAALDKGREIHGHIL--RRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLIS 840
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+ +I G HGF E+I+ F EM+ + P E +F +L ACSH+G + EG K+F MR
Sbjct: 841 WTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMR 900
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
+E +EP + HY +H DV+L
Sbjct: 901 NECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLA 960
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + + D + YV+L+N+YA +W V+K+RK M K+ PGCS IE K
Sbjct: 961 EKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGK 1020
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 177/387 (45%), Gaps = 50/387 (12%)
Query: 43 LIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK 102
L++S V P N H + T N I + + +A+ L T+ + +
Sbjct: 317 LLHSTVCVSPSFTNTTHSV--------TQNQNAKINKFCEMGDLRNAIELLTKSKSYELG 368
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
N ++ VL+ C G VH I+ G + + L++ + NCGDL +
Sbjct: 369 LN--SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKI 426
Query: 163 FDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS------------------ 204
FD V W+ L + YA+ G + SLF +M +V
Sbjct: 427 FDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKV 486
Query: 205 ---------------------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
N +I Y K G +E A+ LF+E+ + DVVSWN+MI+G
Sbjct: 487 KECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGC 546
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
V+ G + LE+F +M +G D T++S+L A A++G+L +G+ +H + +
Sbjct: 547 VVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFS-EE 605
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
V+ N L+DMY+KCG++ A EVF+ M D + +W++ I G ++I +F EMQ
Sbjct: 606 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQS 665
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGK 390
VRP T ++ AC+ + +++G+
Sbjct: 666 KGVRPDIYTVTSIVHACACSSSLDKGR 692
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
NA I+ + G + A+E+ + +S + + S+L CA+ LE GK+VH ++
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 397
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ + L G L+ MY CG + + ++F + + V W+ L+ A G ES++
Sbjct: 398 NGISIDEAL-GAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVS 456
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+F++MQ+L V TF VL + GKV+E K+
Sbjct: 457 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKR 491
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 162/546 (29%), Positives = 259/546 (47%), Gaps = 97/546 (17%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKIT-EPDTFMY 73
NL K+I + + INGF + ++ LI YS +N+A +F T E + F +
Sbjct: 52 NLSKGKEIHSYMLINGFLNSPLSITSLINMYSKC----NQMNFALSIFSDPTHEINVFAF 107
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
N II G + P + Y +M + P+KFTF +KAC +L +HG + K
Sbjct: 108 NAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKK---IHGLLFK 164
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+G E + F+ ++L+ + G + A V F+ DVV W+++ GYA+ G+ M
Sbjct: 165 FGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLET 224
Query: 194 FDEMPVRDLVSWNVMITG---------------------------------------YAK 214
F M +V +TG Y K
Sbjct: 225 FRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGK 284
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
+E A E+F + ++D+ SWN+++S + CG + L + + M G +PD VT+ ++
Sbjct: 285 CKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTV 344
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAK-------VLHGNALIDMYAKCGSIERAIEVF 327
L AC+ L L G+++H ++ SG+ K VL NA+IDMYAKCGS+ A VF
Sbjct: 345 LPACSHLAALMHGREIHGYMI--VSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVF 402
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
M ++DV++W+ +I G HG+ E++ MF M ++++P E+TFVGVL ACSHAG V
Sbjct: 403 ERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVS 462
Query: 388 EGKKYFKLMRDEYNIEPNIRHYG------------------------------------- 410
+G+ + M+ +Y++ P I HY
Sbjct: 463 QGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAA 522
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
+H L +A +R+ + + G YVL+SN+Y + G + V +VR M +++K P
Sbjct: 523 CRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTP 582
Query: 469 GCSLIE 474
GCS IE
Sbjct: 583 GCSWIE 588
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 164/390 (42%), Gaps = 58/390 (14%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITE 67
K C ++ +K+I L+ G D ++ GS ++ G + +A F ++
Sbjct: 147 KACLDVLEIKKIHGLLFKFGLELD-------VFIGSALVNCYLKFGLMEHAQVAFEELPI 199
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
D ++N ++ G AQ + + +M S+ P++FT + VL + N G +
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRII 259
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG +K G++ V NSLI + C + A +F+ + D+ +W+S+ + + + G+
Sbjct: 260 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH 319
Query: 188 SMARSLFDEM---------------------------------------------PVRDL 202
L D M + D+
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 379
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
+ N +I YAK G M A+ +F + +DV SWN MI GY + G +ALEMF M V
Sbjct: 380 LLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 439
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
+PD+VT + +L+AC+ G + G+ + + H +IDM + G ++
Sbjct: 440 QLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDE 499
Query: 323 AIEVFLGMR-DRDVSTWSTLIGGLAFHGFA 351
A E+ L M + + W L+ H A
Sbjct: 500 AYELALTMPIEANPVVWRALLAACRLHKHA 529
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 13/258 (5%)
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
F ++ S ++F N ++TA F + +SL A A LS + + M
Sbjct: 8 FGILIKKSPLFF--NFSSISTAIQSFQQPYNL-TTCIASLQAS-AHHKNLSKGKEIHSYM 63
Query: 198 PVRDLVSWNVMITG----YAKQGEMEKANELFNEVPKR-DVVSWNAMISGYVLCGMNKQA 252
+ ++ + IT Y+K +M A +F++ +V ++NA+ISG++ G ++
Sbjct: 64 LINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEG 123
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
E +++MR+ G PD T + AC D+ LE+ KK+H L + V G+AL++
Sbjct: 124 FEFYQKMRNEGVIPDKFTFPCAIKACLDV--LEI-KKIHGLLFKFGLEL-DVFIGSALVN 179
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
Y K G +E A F + RDV W+ ++ G A G E + FR M V P+ T
Sbjct: 180 CYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFT 239
Query: 373 FVGVLVACSHAGKVEEGK 390
GVL + G + G+
Sbjct: 240 VTGVLSVFAVMGDLNNGR 257
>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
Length = 557
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 264/535 (49%), Gaps = 63/535 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF---VKITE 67
L ++ T+ +Q+QA + + G + A LI S + +A +F V
Sbjct: 19 LARRATSPAAARQLQAQLLVRGLPLPARAAVALIASSH-----SPRHARAVFDSAVPAAS 73
Query: 68 PDTFMYNTII----RGSAQSQNPLD-AVFLYTQMEKCSI-KPNKFTFSFVLKACTRLLYR 121
+ +++ I R ++ S + + A+ L+ M + + +PN FT S V++ C+ L
Sbjct: 74 ENVYLWTATIAAYARHASSSLSAAEGALALFRLMLRRGVPRPNAFTASSVVRCCSALRAV 133
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
G VHG + G V +L+ + + G + A +FD +VV +++ A Y
Sbjct: 134 REGIQVHGFLFSAGLGRASHVGAALVDMYGSLGRVADARRVFDEMPSTNVVLGNTMVACY 193
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
R G++ R +FD M RD +SWN ++ GY +QGE A +LF E+P R+V SWN +I+
Sbjct: 194 VRAGDVEAGRDVFDRMAERDPISWNTLMMGYLRQGEAGVARDLFEEMPDRNVNSWNMVIA 253
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDM 297
G+ A+E+F MR +PD TM L++ACA LG L + +VH L ++M
Sbjct: 254 ACSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQLGSLSIASQVHGILRKGCVEM 313
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
V N+LIDMYAKCGS+ +A +F+ R +D +++ +I LA HG +++ +
Sbjct: 314 NFHVL-----NSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNVMICALAQHGHGRDALQI 368
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------ 411
F EM ++P +TF+GVL AC+HAG V +GK YF+ MR Y IE + HY
Sbjct: 369 FDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRTNYAIEQSPDHYACMVDLYG 428
Query: 412 ---------------------------------HGDVELGRLANKRLLNMRKDESGDYVL 438
H +VE+G++A + L+ + G YVL
Sbjct: 429 RAGLIEEAYQLARAMPVKPHAGVWGALINACRKHCNVEVGKVAARELIAIEPGNPGTYVL 488
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
L+N A +W+ VE V + M I+K GCS +E D+ ++L PNS
Sbjct: 489 LANTLARGQQWDFVETVWQSMRGKGIEKTAGCSWLEV-DRVVHEFLMGESSHPNS 542
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 165/566 (29%), Positives = 273/566 (48%), Gaps = 85/566 (15%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKM 61
R + + + K C +L K++ V GF D L++ S G ++ AHK+
Sbjct: 121 RPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRY--GVLDVAHKV 178
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
FV + D +N +I G Q+ N A+ + +M+ +K + T + +L C +
Sbjct: 179 FVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDV 238
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
G +H ++K+G + + FV N+LI ++ G L A ++FD D+V+W+S+ A Y
Sbjct: 239 INGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAY 298
Query: 182 ARRGELSMARSLFDEMPV----------------------------------------RD 201
+ + S A F M + +D
Sbjct: 299 EQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKD 358
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
+V N ++ YAK G M A+ +F+++P++D +SWN +++GY G+ +A++ + M
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEE 418
Query: 262 VGER-PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
+ P+ T +S++ A + +G L+ G K+H L+ S V LID+Y KCG +
Sbjct: 419 CRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIK-NSLYLDVFVATCLIDLYGKCGRL 477
Query: 321 ERAIEVFLGMRDRDVST-WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
E A+ +F + RD S W+ +I L HG EE++ +F++M +V+ ITFV +L A
Sbjct: 478 EDAMSLFYEI-PRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSA 536
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSH+G V+EG+K F +M+ EY I+P+++HYG
Sbjct: 537 CSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDAS 596
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
++G+ ELG LA+ RLL + + G YVLLSNIYA+ +W V KVR L
Sbjct: 597 IWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLAR 656
Query: 461 DSDIKKQPGCSLIEADDKAFLQYLFN 486
D ++K PG S + KA + Y N
Sbjct: 657 DRGLRKTPGWSSVVVGSKAEVFYTGN 682
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 131/498 (26%), Positives = 235/498 (47%), Gaps = 55/498 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L+ C N+ K++ AL+ + G + + +LI V G I+ + F I + +
Sbjct: 28 LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLI--NLYVTHGDISLSRSTFDYIHKKNI 85
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQM-EKCS---IKPNKFTFSFVLKACTRLLYRNMGFC 126
F +N+II + +A+ Q+ C ++P+ +TF +LKAC L+ G
Sbjct: 86 FSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGKK 142
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VH + K GFE + FV SL++ ++ G L+ A +F DV +W+++ +G+ + G
Sbjct: 143 VHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGN 202
Query: 187 LSMARSLFDEM----------------PV-----------------------RDLVSWNV 207
+ A + + M PV D+ N
Sbjct: 203 AAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNA 262
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+I Y+K G ++ A +F+++ RD+VSWN++I+ Y AL F+ M+ G RPD
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPD 322
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+T++SL + + L D + + + ++ V+ GNAL++MYAK G + A VF
Sbjct: 323 LLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVF 382
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHAGKV 386
+ +D +W+TL+ G +G A E+I + M+ + P + T+V ++ A SH G +
Sbjct: 383 DQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGAL 442
Query: 387 EEGKK-YFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL--NMRKDESGDYVLLSNIY 443
++G K + KL+++ ++ + + + GRL + L + +D S V + I
Sbjct: 443 QQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTS---VPWNAII 499
Query: 444 ASRGEWNRVEKVRKLMDD 461
AS G R E+ +L D
Sbjct: 500 ASLGIHGRGEEALQLFKD 517
>gi|354805213|gb|AER41630.1| CRR4 [Oryza nivara]
Length = 748
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 154/449 (34%), Positives = 233/449 (51%), Gaps = 81/449 (18%)
Query: 101 IKPNKFTFSFVLKACTRL-LYRNMGFCVHGKIVKYGFEFNRFVRN--------------- 144
+ PN FTF+F+L+AC L L R G CVHG+IV+ GF + FV+N
Sbjct: 107 VPPNGFTFTFLLRACALLGLPRPCG-CVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGV 165
Query: 145 -------------------SLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
S++ + + GD A F+ + +VV+W+++ AG+AR G
Sbjct: 166 GAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMG 225
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYA-------------------------------K 214
++ AR++FD MP R+ VSWN+MI+GYA K
Sbjct: 226 DMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAK 285
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLS 273
G+++ ANELF+ +P +++VSWNAMI+GY +AL F+ M G RPD+ T++S
Sbjct: 286 IGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVS 345
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGNALIDMYAKCGSIERAIEVFLG 329
+++ACA LG +E +C + G + V GNALIDM+AKCG + RA +F
Sbjct: 346 VVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYK 400
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M R + TW+T+I G AF+G +++ ++ M R V+ + F+ L AC+H G ++EG
Sbjct: 401 METRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEG 460
Query: 390 KKYFKLMRDEYNIEPNIRHYG----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
F M + YNI+P + HYG + G EL +K++ + S VL+SN A
Sbjct: 461 WSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITELEPFNSSYQVLVSNCSAL 520
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
G W+ V R M + I+K PG S I+
Sbjct: 521 EGRWDGVIDARTSMRNWGIEKVPGSSSIQ 549
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 16/208 (7%)
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G P+ T LL ACA LG VH ++ G + V NAL+D+Y +CG
Sbjct: 106 GVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFG-SDVFVQNALMDVYHRCGGGGG 164
Query: 323 ---AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
A +VF M DRDV +W++++G G A ++ F M V +++ V+
Sbjct: 165 VGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNV----VSWNTVVAG 220
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGRLANKRLLNMRKDESGDYV 437
+ G + + F M + N I Y GDVE R R M + + +
Sbjct: 221 FARMGDMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR---MDQKDVVSWT 277
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIK 465
+ + YA G+ ++ +L D +K
Sbjct: 278 AMVSAYAKIGD---LDTANELFDHMPVK 302
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 244/484 (50%), Gaps = 57/484 (11%)
Query: 23 QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQ 82
Q+ AL+ G S L L+ S P A++ + + P + +I +
Sbjct: 22 QLHALLAKLGLLHRSEFLSALL-SRLPPSPSALSLLLEAPPAVLSPS--LVCPVIVAFSS 78
Query: 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-----------LYRNMGFCVHGKI 131
SQ P A+ L+ CS+ TF +LK+C R ++ + G +H ++
Sbjct: 79 SQAPSSALLLFNHASSCSLPTPLPTFPALLKSCARAFNHSSRASAASVFVSKGMELHCRV 138
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+K G +R+VRN+L+ + G L A FD + V+W++L + + A
Sbjct: 139 LKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGAD 198
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+ MPVR+L WN I + G M++A +F+E+P+RD VSWN++ISGY G Q
Sbjct: 199 RVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQ 258
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
AL +F+EM+ G +P ++T++ +L ACA +G L++G +H L + VA L GNALI
Sbjct: 259 ALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQN-KGIVADGLVGNALI 317
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DMYAKCG ++ A +VF M RD++ W+ +I G + HG + E++ +F M K+ P +
Sbjct: 318 DMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSM---KIEPNPV 374
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TF+GVL ACSH G V EG+KYF M ++Y I P+++HYG
Sbjct: 375 TFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGKIEEAYLMIKE 434
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
VHG ++L + L + ++G V +SN+YA W+ V
Sbjct: 435 NPSTASSVLWKMLLAACRVHGHIDLAYMFFHELRELILTDNGGLVTISNVYAEAKRWDDV 494
Query: 453 EKVR 456
E +R
Sbjct: 495 EHLR 498
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 239/469 (50%), Gaps = 83/469 (17%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC-- 115
A ++ +T P +N +I G + +A + +M I+ +++T++ ++ AC
Sbjct: 236 ARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGS 295
Query: 116 --TRLLYRNMGFCVHGKIVKYGFE----FNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
++ N G VHG I++ E F V N+LI F
Sbjct: 296 CNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITF-------------------- 335
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
Y + + AR +FD+MPVRD++SWN +++GY +E+AN +F+E+P
Sbjct: 336 -----------YTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMP 384
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
+R+V++W MISG G ++ L++F +M+S G P D +TAC+ LG L+ G++
Sbjct: 385 ERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQ 444
Query: 290 VHCTLLDM--TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
+H ++ + SG++ GNALI MY++CG +E A VFL M D +W+ +I LA
Sbjct: 445 IHSQVIRLGHDSGLSA---GNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQ 501
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
HG ++I +F +M + + P ITF+ +L AC+HAG ++EG+ YF M Y I P
Sbjct: 502 HGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGED 561
Query: 408 HYG---------------------------------------VHGDVELGRLANKRLLNM 428
HY +HG++ELG A RLL +
Sbjct: 562 HYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLEL 621
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+ G Y++LSN+YA+ G+W+ V +VR LM + +KK+PGCS +E ++
Sbjct: 622 IPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVEN 670
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 172/383 (44%), Gaps = 67/383 (17%)
Query: 53 GAINYAHKMF--VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF 110
G + A ++F +T DT YN +I + + A+ L+ QM++ P+ FTFS
Sbjct: 85 GNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSS 144
Query: 111 VLKACTRLLYRNMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168
VL A + L+ C +H +++K G V N+L+ + C A
Sbjct: 145 VLSALS-LIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCC-------------AS 190
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV--SWNVMITGYAKQGEMEKANELFN 226
+V S L A AR +FDE P + SW MI GY + ++ A EL +
Sbjct: 191 SPLVKSSQLMAS---------ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLD 241
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD----LG 282
+ V+WNAMISGYV G+ ++A + F M S+G + D+ T SL++AC +G
Sbjct: 242 GLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMG 301
Query: 283 DLEVGKKVHCTLLDMTS----------------------------------GVAKVLHGN 308
G++VH +L V ++ N
Sbjct: 302 MFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWN 361
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
A++ Y IE A +F M +R+V TW+ +I GLA +GF EE + +F +M+ + P
Sbjct: 362 AVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEP 421
Query: 369 TEITFVGVLVACSHAGKVEEGKK 391
+ F G + ACS G ++ G++
Sbjct: 422 CDYAFAGAITACSVLGSLDNGQQ 444
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 118/299 (39%), Gaps = 77/299 (25%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VH I+ GF+ N F+ N LI + ++ A LFD K D+VA ++L + Y+ G
Sbjct: 27 VHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGN 86
Query: 187 LSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+ +A+ LF+ P +RD VS+N MIT Y+ +
Sbjct: 87 VKLAQQLFNATPLTIRDTVSYNAMITAYSHGND--------------------------- 119
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG-KKVHCTLLDMTSGVAK 303
AL +F +M+ G PD T S+L+A + + D E + +HC ++ + + +
Sbjct: 120 ----GHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIP 175
Query: 304 VLHGNALIDMYAKCGS------------------------------------------IE 321
+ NAL+ Y C S +
Sbjct: 176 SV-TNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLV 234
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A E+ G+ W+ +I G G EE+ FR M + ++ E T+ ++ AC
Sbjct: 235 AARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISAC 293
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 148/316 (46%), Gaps = 24/316 (7%)
Query: 36 DSSALRELIYSGSVVIPGAINY-----AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAV 90
D +R++I S + V+ G +N A+ +F ++ E + + +I G AQ+ + +
Sbjct: 350 DKMPVRDII-SWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGL 408
Query: 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150
L+ QM+ ++P + F+ + AC+ L + G +H ++++ G + N+LI +
Sbjct: 409 KLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMY 468
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWN 206
+ CG + +A +F +D V+W+++ A A+ G A LF++M D+ +++
Sbjct: 469 SRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFL 528
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRS 261
++T G +++ F+ + R ++ + +I GM +A + + M
Sbjct: 529 TILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPF 588
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI--DMYAKCGS 319
P +LL C G++E+G + LL++ G G +I +MYA G
Sbjct: 589 EAGAP---IWEALLAGCRIHGNMELGIQAADRLLELIPG----QDGTYIILSNMYAALGQ 641
Query: 320 IERAIEVFLGMRDRDV 335
+ V L MR+R V
Sbjct: 642 WDEVARVRLLMRERGV 657
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 152/472 (32%), Positives = 242/472 (51%), Gaps = 81/472 (17%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
G+ V I+ A+K+F+++ E D+ + +I G + L A E ++ P
Sbjct: 272 GAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQA------REILNLMP--- 322
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
Y+N+ + ++I + G ++ A+ +F
Sbjct: 323 -------------YKNIA-----------------AQTAMINGYLQSGRMDEANEIFSQI 352
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+ D V W+S+ GYA G A LF EM +D+VSWN MI YA+ G+M+KA E+FN
Sbjct: 353 SVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFN 412
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
E+ +R+VVSWN++I+GYV G+ +AL F M+ GE+PD T++ L A A+L L V
Sbjct: 413 EMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNV 472
Query: 287 GKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
G ++H L + +G L NA++ MYAK G + A VF ++ +DV +W++LI G
Sbjct: 473 GVQLHH--LTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGY 530
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
A +G +E++ +F M + P E+TF G+L AC+H G V++G FK M + Y+I+P
Sbjct: 531 ALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQ 590
Query: 406 IRHYG---------------------------------------VHGDVELGRLANKRLL 426
HY +H ++EL + + +RLL
Sbjct: 591 SEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLL 650
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + +YVLLSN++A G W+ VE+VR LM ++ +KQPGCS IE D++
Sbjct: 651 ALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIEIDNQ 702
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 194/394 (49%), Gaps = 64/394 (16%)
Query: 44 IYSGSVVIP-----GAINYAHKMFVKITE-PDTFMYNTIIRGSAQSQNPLDAVFLYTQME 97
IYS +++I G + A ++F + + DT N +I G A+ + +A L+ +M
Sbjct: 108 IYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEM- 166
Query: 98 KCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEF-------NRFVRNSLIYFH 150
+ N +++ +L G+ +GK+ + G +F N N ++ +
Sbjct: 167 ---LVKNVVSWNSILS----------GYTKNGKM-QLGLQFFEAMGERNVVSWNLMVDGY 212
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMIT 210
GDL++A + F +VV+W ++ +G+A G ++ AR+LF+EMP ++LVSWN MI
Sbjct: 213 VGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIG 272
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM--RSVGERP-- 266
Y ++ +++ A +LF E+P++D VSW AMI+GYV G QA E+ M +++ +
Sbjct: 273 AYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAM 332
Query: 267 -----------------------DDVTMLSLLTACADLGDLEVGKKVHCTLL--DMTSGV 301
D V S++T A G + ++ ++ DM S
Sbjct: 333 INGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVS-- 390
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
N +I YA+ G +++A+E+F M++R+V +W++LI G +G E++ F M
Sbjct: 391 -----WNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
++ +P + T V L A ++ + G + L
Sbjct: 446 KQQGEKPDQTTIVCCLRASANLAALNVGVQLHHL 479
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 154/296 (52%), Gaps = 22/296 (7%)
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E N NS+I +A G + A LFD + ++V+W+S+ AGY + A LFD
Sbjct: 43 ERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDR 102
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEM 255
M RD+ SW +MIT Y + GE+EKA ELFN +P K+D V NA+I+GY + ++A ++
Sbjct: 103 MFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKL 162
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
F+EM + V+ S+L+ G +++G + + G V+ N ++D Y
Sbjct: 163 FDEMLV----KNVVSWNSILSGYTKNGKMQLGLQFFEAM-----GERNVVSWNLMVDGYV 213
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE--ITF 373
G ++ A F + +V +W T++ G A +G E+ +F EM PT+ +++
Sbjct: 214 GVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEM------PTKNLVSW 267
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKR-LLNM 428
++ A ++++ K F M ++ ++ ++G V +G+L R +LN+
Sbjct: 268 NAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAM---INGYVRVGKLLQAREILNL 320
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 157/329 (47%), Gaps = 17/329 (5%)
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
F +N I G + A +F + ++V ++S+ + YA+ G ++ AR LFD MP R
Sbjct: 16 FTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQR 75
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
+LVSWN MI GY +E A LF+ + KRD+ SW MI+ Y G ++A E+F +
Sbjct: 76 NLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLL- 134
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
++ D V +L+ A KK+ +L V V+ N+++ Y K G +
Sbjct: 135 --PDKQDTVCRNALIAGYAKKRLFREAKKLFDEML-----VKNVVSWNSILSGYTKNGKM 187
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ ++ F M +R+V +W+ ++ G G + + F+++ P +++V +L
Sbjct: 188 QLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP----TPNVVSWVTMLSGF 243
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGRLANKRLLNMRKDESGDYVL 438
+H G++ E + F M + + N I Y ++ A K + M + +S +
Sbjct: 244 AHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQID---DAYKLFMEMPEKDSVSWTA 300
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
+ N Y G+ + ++ LM +I Q
Sbjct: 301 MINGYVRVGKLLQAREILNLMPYKNIAAQ 329
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/411 (24%), Positives = 186/411 (45%), Gaps = 88/411 (21%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQ--------------------SQNPLDAVFL 92
G I A +F+K+TE + YN++I A+ S N + A +L
Sbjct: 29 GRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYL 88
Query: 93 YTQMEKCS-------IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF---- 141
+ ++ + + K + ++++ ++ TR+ G++ K FN
Sbjct: 89 HNELVEDAARLFDRMFKRDIYSWTLMITCYTRI----------GELEKARELFNLLPDKQ 138
Query: 142 ---VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
RN+LI +A A LFD +VV+W+S+ +GY + G++ + F+ M
Sbjct: 139 DTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMG 198
Query: 199 VRDLVSWNVMITGY-------------------------------AKQGEMEKANELFNE 227
R++VSWN+M+ GY A G M +A LFNE
Sbjct: 199 ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNE 258
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P +++VSWNAMI YV A ++F EM D V+ +++ +G L
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEM----PEKDSVSWTAMINGYVRVGKLLQA 314
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
+++ L+ + A+ A+I+ Y + G ++ A E+F + RD W+++I G A
Sbjct: 315 REI-LNLMPYKNIAAQT----AMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAH 369
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
G +E++ +F+EM V +++ ++ A + AG++++ + F M++
Sbjct: 370 CGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQE 416
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 165/566 (29%), Positives = 273/566 (48%), Gaps = 85/566 (15%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKM 61
R + + + K C +L K++ V GF D L++ S G ++ AHK+
Sbjct: 121 RPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRY--GVLDVAHKV 178
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
FV + D +N +I G Q+ N A+ + +M+ +K + T + +L C +
Sbjct: 179 FVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDV 238
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
G +H ++K+G + + FV N+LI ++ G L A ++FD D+V+W+S+ A Y
Sbjct: 239 INGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAY 298
Query: 182 ARRGELSMARSLFDEMPV----------------------------------------RD 201
+ + S A F M + +D
Sbjct: 299 EQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKD 358
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
+V N ++ YAK G M A+ +F+++P++D +SWN +++GY G+ +A++ + M
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEE 418
Query: 262 VGER-PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
+ P+ T +S++ A + +G L+ G K+H L+ S V LID+Y KCG +
Sbjct: 419 CRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIK-NSLYLDVFVATCLIDLYGKCGRL 477
Query: 321 ERAIEVFLGMRDRDVST-WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
E A+ +F + RD S W+ +I L HG EE++ +F++M +V+ ITFV +L A
Sbjct: 478 EDAMSLFYEI-PRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSA 536
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSH+G V+EG+K F +M+ EY I+P+++HYG
Sbjct: 537 CSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDAS 596
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
++G+ ELG LA+ RLL + + G YVLLSNIYA+ +W V KVR L
Sbjct: 597 IWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLAR 656
Query: 461 DSDIKKQPGCSLIEADDKAFLQYLFN 486
D ++K PG S + KA + Y N
Sbjct: 657 DRGLRKTPGWSSVVVGSKAEVFYTGN 682
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 131/498 (26%), Positives = 235/498 (47%), Gaps = 55/498 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L+ C N+ K++ AL+ + G + + +LI V G I+ + F I + +
Sbjct: 28 LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLI--NLYVTHGDISLSRSTFDYIHKKNI 85
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQM-EKCS---IKPNKFTFSFVLKACTRLLYRNMGFC 126
F +N+II + +A+ Q+ C ++P+ +TF +LKAC L+ G
Sbjct: 86 FSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGKK 142
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VH + K GFE + FV SL++ ++ G L+ A +F DV +W+++ +G+ + G
Sbjct: 143 VHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGN 202
Query: 187 LSMARSLFDEM----------------PV-----------------------RDLVSWNV 207
+ A + + M PV D+ N
Sbjct: 203 AAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNA 262
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+I Y+K G ++ A +F+++ RD+VSWN++I+ Y AL F+ M+ G RPD
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPD 322
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+T++SL + + L D + + + ++ V+ GNAL++MYAK G + A VF
Sbjct: 323 LLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVF 382
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHAGKV 386
+ +D +W+TL+ G +G A E+I + M+ + P + T+V ++ A SH G +
Sbjct: 383 DQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGAL 442
Query: 387 EEGKK-YFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL--NMRKDESGDYVLLSNIY 443
++G K + KL+++ ++ + + + GRL + L + +D S V + I
Sbjct: 443 QQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTS---VPWNAII 499
Query: 444 ASRGEWNRVEKVRKLMDD 461
AS G R E+ +L D
Sbjct: 500 ASLGIHGRGEEALQLFKD 517
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 162/546 (29%), Positives = 259/546 (47%), Gaps = 97/546 (17%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKIT-EPDTFMY 73
NL K+I + + INGF + ++ LI YS +N+A +F T E + F +
Sbjct: 52 NLSKGKEIHSYMLINGFLNSPLSITSLINMYSKC----NQMNFALSIFSDPTHEINVFAF 107
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
N II G + P + Y +M + P+KFTF +KAC +L +HG + K
Sbjct: 108 NAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKK---IHGLLFK 164
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+G E + F+ ++L+ + G + A V F+ DVV W+++ GYA+ G+ M
Sbjct: 165 FGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLET 224
Query: 194 FDEMPVRDLVSWNVMITG---------------------------------------YAK 214
F M +V +TG Y K
Sbjct: 225 FRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGK 284
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
+E A E+F + ++D+ SWN+++S + CG + L + + M G +PD VT+ ++
Sbjct: 285 CKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTV 344
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAK-------VLHGNALIDMYAKCGSIERAIEVF 327
L AC+ L L G+++H ++ SG+ K VL NA+IDMYAKCGS+ A VF
Sbjct: 345 LPACSHLAALMHGREIHGYMI--VSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVF 402
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
M ++DV++W+ +I G HG+ E++ MF M ++++P E+TFVGVL ACSHAG V
Sbjct: 403 ERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVS 462
Query: 388 EGKKYFKLMRDEYNIEPNIRHYG------------------------------------- 410
+G+ + M+ +Y++ P I HY
Sbjct: 463 QGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAA 522
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
+H L +A +R+ + + G YVL+SN+Y + G + V +VR M +++K P
Sbjct: 523 CRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTP 582
Query: 469 GCSLIE 474
GCS IE
Sbjct: 583 GCSWIE 588
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 164/390 (42%), Gaps = 58/390 (14%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITE 67
K C ++ +K+I L+ G D ++ GS ++ G + +A F ++
Sbjct: 147 KACLDVLEIKKIHGLLFKFGLELD-------VFIGSALVNCYLKFGLMEHAQVAFEELPI 199
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
D ++N ++ G AQ + + +M S+ P++FT + VL + N G +
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRII 259
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG +K G++ V NSLI + C + A +F+ + D+ +W+S+ + + + G+
Sbjct: 260 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH 319
Query: 188 SMARSLFDEM---------------------------------------------PVRDL 202
L D M + D+
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 379
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
+ N +I YAK G M A+ +F + +DV SWN MI GY + G +ALEMF M V
Sbjct: 380 LLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 439
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
+PD+VT + +L+AC+ G + G+ + + H +IDM + G ++
Sbjct: 440 QLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDE 499
Query: 323 AIEVFLGMR-DRDVSTWSTLIGGLAFHGFA 351
A E+ L M + + W L+ H A
Sbjct: 500 AYELALTMPIEANPVVWRALLAACRLHKHA 529
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 13/258 (5%)
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
F ++ S ++F N ++TA F + +SL A A LS + + M
Sbjct: 8 FGILIKKSPLFF--NFSSISTAIQSFQQPYNL-TTCIASLQAS-AHHKNLSKGKEIHSYM 63
Query: 198 PVRDLVSWNVMITG----YAKQGEMEKANELFNEVPKR-DVVSWNAMISGYVLCGMNKQA 252
+ ++ + IT Y+K +M A +F++ +V ++NA+ISG++ G ++
Sbjct: 64 LINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEG 123
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
E +++MR+ G PD T + AC D+ LE+ KK+H L + V G+AL++
Sbjct: 124 FEFYQKMRNEGVIPDKFTFPCAIKACLDV--LEI-KKIHGLLFKFGLEL-DVFIGSALVN 179
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
Y K G +E A F + RDV W+ ++ G A G E + FR M V P+ T
Sbjct: 180 CYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFT 239
Query: 373 FVGVLVACSHAGKVEEGK 390
GVL + G + G+
Sbjct: 240 VTGVLSVFAVMGDLNNGR 257
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 230/463 (49%), Gaps = 72/463 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A K+F + D F + +I ++ +A+ L++ M ++ V+
Sbjct: 214 GMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVV 273
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC RL G HG + G V+N+LI+ +++ ++VV
Sbjct: 274 AACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSS---------------FLNVV 318
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
A AR LFD D SWN MI GY K G ++ A ELF +P +D
Sbjct: 319 A----------------ARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKD 362
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW MISG V + +AL +F M++ G +PD+VT++S+++AC ++ LE GK +H
Sbjct: 363 NVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHE 422
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ + + +L G +LIDMY KCG +E A+EVF M +R W+ +I GLA +G
Sbjct: 423 YIREHQYTITVIL-GTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVM 481
Query: 353 ESIAMFREMQRLKV-RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411
+S+ MF EM+ P EITF GVL AC HAG VEEG+ +FKLM+ +Y+I PNIRHYG
Sbjct: 482 KSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGC 541
Query: 412 ---------------------------------------HGDVELGRLANKRLLNMRKDE 432
HGD E+G ++L+N+
Sbjct: 542 MVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHH 601
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
G + +LSNIYAS G W V+ +R M + K PG S++E+
Sbjct: 602 DGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVES 644
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 210/422 (49%), Gaps = 36/422 (8%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIY--SGSVVIPGAINYAHKMFVKITEPDTF 71
+C++ R L QI A +G +D+ A LI + + ++P +++ ++ + P+ F
Sbjct: 13 RCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAF 72
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
N +++ + + P + LY M S P+ +T + + AC G VH
Sbjct: 73 SCNMVLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRRAIEEGRQVHCHA 129
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
V++GF N ++ N+L+ ++ CG L A +FD D V+W+++ A Y + ++ A
Sbjct: 130 VRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAV 189
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+F MP R + + M++ + ++G +++A ++F+ V ++DV +W AMIS + G +
Sbjct: 190 GVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAE 249
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC---------------TLLD 296
AL +F +MR G D+ M+ ++ ACA L G+ H L+
Sbjct: 250 ALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIH 309
Query: 297 MTSGVAKVLHG---------------NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
M S V+ N++I Y K GS++ A E+F M D+D +W+T+
Sbjct: 310 MYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTM 369
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD-EY 400
I G + + E++ +F MQ ++P E+T V V+ AC++ +E+GK + +R+ +Y
Sbjct: 370 ISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQY 429
Query: 401 NI 402
I
Sbjct: 430 TI 431
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 156/469 (33%), Positives = 237/469 (50%), Gaps = 74/469 (15%)
Query: 20 TLKQIQALVTINGFNSDSSALRELIYSGSVVIP--GAINYAHKMFVKITEPDTFMYNTII 77
+L+ I A + G ++ + AL +LI V+ P + YA +F I EP+ ++NT+
Sbjct: 2 SLRMIHAQMIKTGLHNTNYALSKLI-EFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMF 60
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
RG A S +P+ A++LY M + PN +TF F+LK+C + G +HG ++K G++
Sbjct: 61 RGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 120
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAK----------------------------- 168
+ +V SLI + G L A +FD +
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEI 180
Query: 169 --MDVVAWSSLTAGYARRGELSMARSLF----------DEMPVRDLVS------------ 204
DVV+W+++ +GYA G A LF DE + +VS
Sbjct: 181 PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 240
Query: 205 ----W-------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
W N +I Y+K GE+E A LF + +DV+SWN +I GY
Sbjct: 241 QVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+ K+AL +F+EM GE P+DVTMLS+L ACA LG +++G+ +H + GV
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSL 360
Query: 308 -NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
+LIDMYAKCG IE A +VF M R +S+W+ +I G A HG A + +F +M++ +
Sbjct: 361 LTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGI 420
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV 415
P +ITFVG+L ACSH+G ++ G+ F+ M +Y I P + HYG D+
Sbjct: 421 DPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDL 469
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 42/342 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A K+F +I D +N +I G A++ N +A+ L+ M K +++P++ T V+
Sbjct: 168 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 227
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + +G VH I +GF N + N+LI ++ CG++ TA LF+G + DV+
Sbjct: 228 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVI 287
Query: 173 AWSSLTAGYARRGELSMARSLFDEM----------------------PVRDLVSW----- 205
+W++L GY A LF EM D+ W
Sbjct: 288 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYI 347
Query: 206 --------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+I YAK G++E A ++F+ + R + SWNAMI G+ + G
Sbjct: 348 NKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANA 407
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
A ++F +MR G PDD+T + LL+AC+ G L++G+ + ++ K+ H +I
Sbjct: 408 AFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMI 467
Query: 312 DMYAKCGSIERAIEVFLGM-RDRDVSTWSTLIGGLAFHGFAE 352
D+ CG + A E+ M + D W +L+ H E
Sbjct: 468 DLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVE 509
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 129/280 (46%), Gaps = 20/280 (7%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
+Q+ + +GF S+ + LI YS G + A +F ++ D +NT+I G
Sbjct: 240 RQVHLWIDDHGFGSNLKIVNALIDLYSKC----GEVETACGLFEGLSYKDVISWNTLIGG 295
Query: 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK--YGFE 137
+A+ L+ +M + PN T +L AC L ++G +H I K G
Sbjct: 296 YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVT 355
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ SLI +A CGD+ A +FD + +W+++ G+A G+ + A LF +M
Sbjct: 356 NASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKM 415
Query: 198 PVR----DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS-----WNAMISGYVLCGM 248
D +++ +++ + G ++ +F + + ++ + MI CG+
Sbjct: 416 RKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGL 475
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
K+A EM +R++ PD V SLL AC ++E+G+
Sbjct: 476 FKEAKEM---IRTMPMEPDGVIWCSLLKACKMHNNVELGE 512
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 173/525 (32%), Positives = 259/525 (49%), Gaps = 91/525 (17%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGA-INYAHK 60
N S L + L L+QI A V +S++S LI Y + P A I + H
Sbjct: 73 NPQTFSLLLNQRPKLSPLQQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDH- 131
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM----EKCSIKPNKFTFSFVLKACT 116
P ++N +IR ++ +N + + L+ +M + P+++TF+FV+ +C+
Sbjct: 132 --YPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCS 189
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
+ G VHG +VK GFE N +V NS+I N SV
Sbjct: 190 HQISLIYGEIVHGMVVKSGFESNLYVGNSVI---------NMCSV--------------- 225
Query: 177 LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW 236
+AR + AR +F++M RD+ SW ++ GYAK GEM++A ELFN +P R+ VSW
Sbjct: 226 ----FARMED---ARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSW 278
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTL- 294
MISG++ CG +AL F M P++ ++ +L+ACA LG L+ G +H +
Sbjct: 279 AVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYID 338
Query: 295 ---LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ +S ++ ALIDMYAKCG I+ A VF G+ RDV +++++I GL++HG
Sbjct: 339 KIGIRQSSNIS-----TALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLG 393
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
++++ +F +M V P EIT +GVL CSH+G VEEG M + I P I HYG
Sbjct: 394 KDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGC 453
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMR-KD 431
+H +V LG + ++ D
Sbjct: 454 YIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSD 513
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+G VLLSN+YAS G W RV ++RKLM D + PGCS IE +
Sbjct: 514 HNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVN 558
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 165/556 (29%), Positives = 267/556 (48%), Gaps = 100/556 (17%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-EPD 69
L K+C + +TL+QI TI+ + + L + I Y+ +F IT P+
Sbjct: 27 LLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISLKD------FTYSTLIFSHITPHPN 80
Query: 70 TFMYNTIIRGSAQSQN--PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
+ +N ++R + + + PL + LY QM+ +I PN FTF FV AC L M
Sbjct: 81 DYAFNIMLRATTTTWHDYPL-TLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLA 139
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H ++ K G + + NS++ + CG+ A +FD + D+V+W+SL +GYA+ G
Sbjct: 140 HCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFA 199
Query: 188 SMARSLF-----------DEMPV------------RDLVSW-----------------NV 207
A +F DEM + +L W +
Sbjct: 200 REAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSA 259
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+I+ Y+K GE+ + +F+ +P RD ++WNA IS Y GM +A+ +F M+ G P+
Sbjct: 260 LISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPN 319
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH----GNALIDMYAKCGSIERA 323
VT+ ++L+ACA +G L++GK+ +D + + H ALIDMYAKCGS+E A
Sbjct: 320 KVTLTAVLSACASIGALDLGKQ-----MDEYATHRGLQHDIFVATALIDMYAKCGSLESA 374
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM--QRLKVRPTEITFVGVLVACS 381
VF M ++ ++W+ +I LA HG A+E++++F M + RP +ITFV +L AC
Sbjct: 375 QRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACV 434
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGD--------------------------- 414
HAG V+EG + F +M + + P I HY D
Sbjct: 435 HAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTL 494
Query: 415 ------------VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462
V++G + LL + SG+Y++ S IY + W+ ++R LM ++
Sbjct: 495 GALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMREN 554
Query: 463 DIKKQPGCSLIEADDK 478
+ K PGCS IE ++
Sbjct: 555 GVTKTPGCSWIEVGNQ 570
>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
Length = 768
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 156/494 (31%), Positives = 245/494 (49%), Gaps = 74/494 (14%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF--LYTQMEKCSIKPNKFTFSFVLKAC 115
A +FVK+ D + T+I G +++ + M PN+FTF V++AC
Sbjct: 223 ALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRAC 282
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC---------------------- 153
RL ++G VHG ++K G E++ + +L+ F+ C
Sbjct: 283 GRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALN 342
Query: 154 ---------GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS 204
G + A ++F+G +M+ V+++ + GYA G++ ++ LF++MP R + S
Sbjct: 343 SLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFS 402
Query: 205 WNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
N MI+ Y++ GE++KA ELF E ++D V+WN+MISGY+ G ++AL+++ M +
Sbjct: 403 SNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLS 462
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
+ T +L AC+ LG L+ G+ +H L+ T + V G +LIDMY+KCGSI A
Sbjct: 463 IQQTRSTFSALFHACSCLGSLQQGQLLHAHLIK-TPFESNVYVGTSLIDMYSKCGSIMEA 521
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
F+ + +V+ W+ LI G A+HG E+I++F M + P TFVGVL ACS A
Sbjct: 522 QTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRA 581
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG-----------------------------VHG- 413
G V EG K F M Y++ P + HY V G
Sbjct: 582 GLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGA 641
Query: 414 ---------DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
D+E+G +++ + YV+LSNIYA G W VRK++ +
Sbjct: 642 LLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKV 701
Query: 465 KKQPGCSLIEADDK 478
KK PGCS IE ++K
Sbjct: 702 KKDPGCSWIELNNK 715
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 189/399 (47%), Gaps = 42/399 (10%)
Query: 25 QALVTINGFNSDSSALRELIYSGSVVIPGA----INYAHKMFVKITEPDTFMYNTIIRGS 80
Q L + + S L E+I + + A ++ A ++F ++ + +NT+I
Sbjct: 54 QRLKEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSY 113
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
++ +A+FL M + +K ++ TFS VL C RL G +H ++K G E
Sbjct: 114 SKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFE 173
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
V ++L+YF+A+C ++ A +FD + + V WS + GY + A S+F +MP R
Sbjct: 174 LVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRR 233
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D+V+W +I+G++K G+ CG +ALEMF M
Sbjct: 234 DVVAWTTLISGFSKNGDG---------------------------CG---KALEMFRLMM 263
Query: 261 SVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
GE P++ T ++ AC LG L VG+ VH L+ + G AL++ Y +C +
Sbjct: 264 RSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSI-GGALVEFYCECEA 322
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I+ A+ V G+ + ++ ++LI GL G E++ +F M + + G V
Sbjct: 323 IDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAV- 381
Query: 380 CSHAGKVEEGKKYFKLM--RDEYNIEPNIRHYGVHGDVE 416
G++++ K+ F+ M R ++ I Y +G+++
Sbjct: 382 ---GGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEID 417
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 11/247 (4%)
Query: 53 GAINYAHKMFVKI-TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV 111
G I+ A ++F + E D +N++I G S P +A+ LY M + SI+ + TFS +
Sbjct: 414 GEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSAL 473
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
AC+ L G +H ++K FE N +V SLI ++ CG + A F +V
Sbjct: 474 FHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNV 533
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELFNE 227
AW++L G+A G S A SLFD M + L G ++ G + + ++F+
Sbjct: 534 AAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHS 593
Query: 228 VPKRDVVSWNAMISGYV----LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+ + S + Y L G + E E ++ + D V +LL+AC D
Sbjct: 594 MER--CYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMD 651
Query: 284 LEVGKKV 290
LEVG++V
Sbjct: 652 LEVGERV 658
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 155/507 (30%), Positives = 248/507 (48%), Gaps = 74/507 (14%)
Query: 11 LWKKCTNLRTLKQIQA-LVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
L +KC +L LKQI VT+ S L + + + ++ A K+F I PD
Sbjct: 260 LLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVD-AQKVFNHIQNPD 318
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+ +I + P A +++ + ++P+ F + AC + G VHG
Sbjct: 319 IVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHG 378
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ ++ + V N+LI D+ Y+R G + +
Sbjct: 379 MVFRFELGSDPIVGNALI-------DM------------------------YSRSGAIEV 407
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
A S+F M ++D+ SW ++ G+ K ++E A +F+E+P R+ VSW AMI+GYV +
Sbjct: 408 ACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVP 467
Query: 250 KQALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
LE+F+EMR+ G + P +T++++L+ CAD+G ++G VH ++ T+ V N
Sbjct: 468 IPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVH-GYVNKTNLDLDVTVNN 526
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
AL+DMYAK G++ A+++F M RDV +W+T+I GLA HG ++ F +M + P
Sbjct: 527 ALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXP 586
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
E+T + VL ACSHAG V EG+ F+ M + I+P I+HYG
Sbjct: 587 NEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKEL 646
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
VHG++ L +A K ++ + D+ G Y+LL NIY S W
Sbjct: 647 IEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRW 706
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEAD 476
K RK M D +KK+PGCS +E +
Sbjct: 707 EDALKARKAMRDRRVKKKPGCSWVEVN 733
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 230/463 (49%), Gaps = 72/463 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A K+F + D F + +I ++ +A+ L++ M ++ V+
Sbjct: 214 GMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVV 273
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC RL G HG + G V+N+LI+ +++ ++VV
Sbjct: 274 AACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSS---------------FLNVV 318
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
A AR LFD D SWN MI GY K G ++ A ELF +P +D
Sbjct: 319 A----------------ARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKD 362
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW MISG V + +AL +F M++ G +PD+VT++S+++AC ++ LE GK +H
Sbjct: 363 NVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHE 422
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ + + +L G +LIDMY KCG +E A+EVF M +R W+ +I GLA +G
Sbjct: 423 YIREHQYTITVIL-GTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVM 481
Query: 353 ESIAMFREMQRLKV-RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411
+S+ MF EM+ P EITF GVL AC HAG VEEG+ +FKLM+ +Y+I PNIRHYG
Sbjct: 482 KSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGC 541
Query: 412 ---------------------------------------HGDVELGRLANKRLLNMRKDE 432
HGD E+G ++L+N+
Sbjct: 542 MVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHH 601
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
G + +LSNIYAS G W V+ +R M + K PG S++E+
Sbjct: 602 DGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVES 644
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 210/422 (49%), Gaps = 36/422 (8%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIY--SGSVVIPGAINYAHKMFVKITEPDTF 71
+C++ R L QI A +G +D+ A LI + + ++P +++ ++ + P+ F
Sbjct: 13 RCSSARHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAF 72
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
N +++ + + P + LY M S P+ +T + + AC G VH
Sbjct: 73 SCNMVLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRRAIEEGRQVHCHA 129
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
V++GF N ++ N+L+ ++ CG L A +FD D V+W+++ A Y + ++ A
Sbjct: 130 VRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAV 189
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+F MP R + + M++ + ++G +++A ++F+ V ++DV +W AMIS + G +
Sbjct: 190 GVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAE 249
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC---------------TLLD 296
AL +F +MR G D+ M+ ++ ACA L G+ H L+
Sbjct: 250 ALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIH 309
Query: 297 MTSGVAKVLHG---------------NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
M S V+ N++I Y K GS++ A E+F M D+D +W+T+
Sbjct: 310 MYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTM 369
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD-EY 400
I G + + E++ +F MQ ++P E+T V V+ AC++ +E+GK + +R+ +Y
Sbjct: 370 ISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQY 429
Query: 401 NI 402
I
Sbjct: 430 TI 431
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 154/509 (30%), Positives = 261/509 (51%), Gaps = 48/509 (9%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L C + +L+ + A + G S A + + S + P +Y+ +F E +
Sbjct: 35 LIHTCKDTVSLRLVHAHILRRGVLSSRVAAQLVSCSSLLKSP---DYSLSIFRNSEERNP 91
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F++N +IRG ++ +V + M +KP++ TF FVLK+ ++L +R +G +H
Sbjct: 92 FVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAA 151
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF----DGDAKMDVVAWSSLTAGYARRGE 186
+K + + FVR SL+ +A G LN A +F D K ++ W+ L GY R +
Sbjct: 152 TLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYCRAKD 211
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ MA +LF MP R+ SW+ +I GY GE+ +A +LF +P+++VVSW +I+G+
Sbjct: 212 MQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQT 271
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
G + A+ + EM G +P++ T+ ++L+AC+ G L G ++H +LD + + +
Sbjct: 272 GDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAI- 330
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
G +L+DMYAKCG ++ A VF M +D+ +W+ +I G A HG ++I FR+M
Sbjct: 331 GTSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGE 390
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLAN---- 422
+P E+ F+ VL AC ++G+V+ G +F MR +Y IEP ++HY + D+ LGR
Sbjct: 391 KPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDL-LGRAGKLDEA 449
Query: 423 -----------------------------------KRLLNMRKDESGDYVLLSNIYASRG 447
+ LL + + G Y+ L +A++G
Sbjct: 450 HELVEYMPINPDLTTWAALYRACKAHKSNRTDIVLQNLLELDPELRGSYIFLDKTHAAKG 509
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
++ VEK R + ++ GCS IE D
Sbjct: 510 KYQDVEKRRLSLQKKVKERSMGCSYIELD 538
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 244/484 (50%), Gaps = 57/484 (11%)
Query: 23 QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQ 82
Q+ AL+ G S L L+ S P A++ + + P + +I +
Sbjct: 8 QLHALLAKLGLLHRSEFLSALL-SRLPPSPSALSLLLEAPPAVLSPS--LVCPVIVAFSS 64
Query: 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-----------LYRNMGFCVHGKI 131
SQ P A+ L+ CS+ TF +LK+C R ++ + G +H ++
Sbjct: 65 SQAPSSALLLFNHASSCSLPTPLPTFPALLKSCARAFNHSSRASAASVFVSKGMELHCRV 124
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+K G +R+VRN+L+ + G L A FD + V+W++L + + A
Sbjct: 125 LKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGAD 184
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+ MPVR+L WN I + G M++A +F+E+P+RD VSWN++ISGY G Q
Sbjct: 185 RVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQ 244
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
AL +F+EM+ G +P ++T++ +L ACA +G L++G +H L + VA L GNALI
Sbjct: 245 ALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQN-KGIVADGLVGNALI 303
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DMYAKCG ++ A +VF M RD++ W+ +I G + HG + E++ +F M K+ P +
Sbjct: 304 DMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSM---KIEPNPV 360
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TF+GVL ACSH G V EG+KYF M ++Y I P+++HYG
Sbjct: 361 TFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGKIEEAYLMIKE 420
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
VHG ++L + L + ++G V +SN+YA W+ V
Sbjct: 421 NPSTASSVLWKMLLAACRVHGHIDLAYMFFHELRELILTDNGGLVTISNVYAEAKRWDDV 480
Query: 453 EKVR 456
E +R
Sbjct: 481 EHLR 484
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 163/556 (29%), Positives = 254/556 (45%), Gaps = 111/556 (19%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
++RTL+ + + + + +SS +L+ + + + + A K+F +I E + + N +
Sbjct: 54 DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASL--KDVASARKVFDEIPERNVIIINVM 111
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
IR + + V ++ M C+++P+ +TF VLKAC+ +G +HG K G
Sbjct: 112 IRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGL 171
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
FV N L+ + CG LS AR + DE
Sbjct: 172 SSTLFVGNGLVSMYGKCG-------------------------------FLSEARLVLDE 200
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANE--------------------------------- 223
M RD+VSWN ++ GYA+ + A E
Sbjct: 201 MSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVM 260
Query: 224 ----LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
+F ++ K+ +VSWN MI Y+ M +A+E++ M + G PD V++ S+L AC
Sbjct: 261 YVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACG 320
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
D L +GKK+H ++ + +L NALIDMYAKCG +E+A +VF M+ RDV +W+
Sbjct: 321 DTSALSLGKKIH-GYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+I F G +++A+F ++Q + P I FV L ACSHAG +EEG+ FKLM D
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y I P + H VH D ++G L
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
A +L + ++SG YVLLSNIYA G W V +R +M +KK PG S +E ++
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEV-NRII 558
Query: 481 LQYLFNLKPKPNSGNL 496
+L + P S +
Sbjct: 559 HTFLVGDRSHPQSDEI 574
>gi|449459744|ref|XP_004147606.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Cucumis sativus]
gi|449529850|ref|XP_004171911.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Cucumis sativus]
Length = 580
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 162/569 (28%), Positives = 270/569 (47%), Gaps = 110/569 (19%)
Query: 16 TNLRTLKQIQALVTINGF-NSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
+++ QI A + +NG N +S +R++ S Y ++ PD F +
Sbjct: 14 VHVKQATQIHAQILVNGLPNLESCLVRQITRSQFTCARIVSRYLQRILHHSRNPDAFTWA 73
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
+R +Q+ ++A+ Y QM++ + P+ F S L+AC R++ + G+C+H ++ K
Sbjct: 74 CAVRFFSQNGQFMEAIAHYVQMQRLGLHPSTFAVSSTLRACGRIMCKFRGWCIHAQVYKL 133
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
GF +V+ +L+ F++ GD+ A +FD + +VV+W+S+ +GY + G L A+ LF
Sbjct: 134 GFCRCVYVQTALVDFYSKLGDMGFAQKVFDEMTEKNVVSWNSILSGYVKIGNLVDAQKLF 193
Query: 195 DEMPVRDLVS-------------------------------WNVMITGYAKQGEMEKANE 223
DEMPV+D +S WN MI GY G+M+ A
Sbjct: 194 DEMPVKDAISWNSMLTGFSNSGNMDRACCLFQQMGEKSSASWNAMIGGYVNCGDMKAARN 253
Query: 224 LFNEVPKR---------------------------------DVVSWNAMISGYVLCGMNK 250
LF+ +P R +++S+NAMI+ Y M
Sbjct: 254 LFDVMPNRNNVTRITLIAGYSKLGEVNSAYELFDKMEESEKELLSFNAMIACYSQNSMPN 313
Query: 251 QALEMFEEMRS--VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-G 307
+ALE+F M V +PD++T S+++AC LG+L G + + + G+ H
Sbjct: 314 KALELFNLMLQPHVNIQPDEMTFASVISACTQLGNLSYGTWIESYMEKL--GIELDDHLA 371
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
AL+D+YAK G+I RA E+F G++ RD+ +S +I G + A E+I +F+EM R+ +
Sbjct: 372 TALVDLYAKSGNINRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIRLFKEMLRVNIC 431
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------------- 411
P +T+ G+L A +HAG V+EG F M+D + + P HYG+
Sbjct: 432 PNLVTYAGLLTAYNHAGLVDEGYLCFSSMKD-HGLAPLADHYGIMVDLLGRAGRLEEAYE 490
Query: 412 -----------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
H +VELG +A + + D +G LL+NIY+S
Sbjct: 491 LIHSMPVQPNAGVWGALLHACKLHNNVELGEIAARNCSKLVTDTTGYRSLLANIYSSMER 550
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
W+ +++RK M + K GCS +E +
Sbjct: 551 WDDAKRMRKAMGNKIFAKISGCSWMEQSE 579
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 160/502 (31%), Positives = 247/502 (49%), Gaps = 79/502 (15%)
Query: 51 IPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF 110
+ G++N A + F I D + ++ A++ D++ L+ +M PN FTF+
Sbjct: 88 VCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAG 147
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
VLKAC L ++G VHG ++K +E + +V L+ + GD N +F+ K D
Sbjct: 148 VLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHD 207
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEM--------------------PVRDL-----VSW 205
V+ WS + + YA+ + A LF +M + +L V
Sbjct: 208 VIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHC 267
Query: 206 NVMITG--------------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+V+ G YAK G ++ + +LF E+P R+ V+WN MI GYV G +
Sbjct: 268 HVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDK 327
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
AL +++ M + +VT S+L ACA L +E+G ++H L T V+ GNALI
Sbjct: 328 ALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLK-TIYDKDVVVGNALI 386
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DMYAKCGSI+ A VF + +RD +W+ +I G + HG E++ F+ MQ + P ++
Sbjct: 387 DMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKL 446
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TFV +L ACS+AG ++ G+ YFK M +Y IEP + HY
Sbjct: 447 TFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEE 506
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+H DV+LG ++ +++L + + +VLLSNIYA WN V
Sbjct: 507 IPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSV 566
Query: 453 EKVRKLMDDSDIKKQPGCSLIE 474
VRK M + +KK+PG S IE
Sbjct: 567 ASVRKFMKNKGVKKEPGLSWIE 588
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 200/401 (49%), Gaps = 43/401 (10%)
Query: 68 PD--TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
PD T + T+I+G QS + V L++++ + + N F F+ +LK + + +
Sbjct: 2 PDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAY 61
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H I K G E N FV +LI +A CG +N+A FD A D+V+W+ + A YA
Sbjct: 62 SLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEND 121
Query: 186 ELSMARSLFDEMPV---------------------------------------RDLVSWN 206
+ LF EM + DL
Sbjct: 122 RFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGV 181
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
++ Y K G+ +F E+PK DV+ W+ MIS Y +++A+E+F +MR P
Sbjct: 182 GLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLP 241
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
+ T S+L +CA + +L++GK+VHC +L + V NAL+D+YAKCG ++ ++++
Sbjct: 242 NQFTFASVLQSCASIENLQLGKQVHCHVLKVGLD-GNVFVSNALMDVYAKCGRLDNSMKL 300
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F+ + +R+ TW+T+I G G ++++++++ M +V+ +E+T+ VL AC+ +
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAM 360
Query: 387 EEGKKYFKL-MRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426
E G + L ++ Y+ + + + + + G + N RL+
Sbjct: 361 ELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLV 401
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 140/283 (49%), Gaps = 20/283 (7%)
Query: 17 NLRTLKQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
NL+ KQ+ V G + + S+AL + +Y+ G ++ + K+F+++ + +
Sbjct: 258 NLQLGKQVHCHVLKVGLDGNVFVSNALMD-VYAKC----GRLDNSMKLFMELPNRNEVTW 312
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
NT+I G QS + A+ LY M +C ++ ++ T+S VL+AC L +G +H +K
Sbjct: 313 NTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLK 372
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
++ + V N+LI +A CG + A ++FD ++ D ++W+++ +GY+ G + A
Sbjct: 373 TIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKA 432
Query: 194 FDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS-----WNAMISGYV 244
F M V + +++ +++ + G ++ F + + + + M+
Sbjct: 433 FQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLG 492
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
G +A+++ EE + P+ +LL AC D+++G
Sbjct: 493 RSGHLDKAVKLIEE---IPLEPNVKVWRALLGACVIHNDVDLG 532
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P R+ VS+ +I GYV + +++F + G + ++L + E+
Sbjct: 1 MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
+H + + + G ALID YA CGS+ A + F + +D+ +W+ ++ A
Sbjct: 61 YSLHACIYKLGHE-SNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAE 119
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ ++S+ +F EM+ + P TF GVL AC
Sbjct: 120 NDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC 152
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 155/503 (30%), Positives = 243/503 (48%), Gaps = 79/503 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I AH +F + ++N ++ Q + + ++ QM+ I PN+FT+ +L
Sbjct: 294 GDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCIL 353
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+ CT +G +H +K GFE + +V LI ++ G L+ A + + K DVV
Sbjct: 354 RTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVV 413
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP---------------------------------- 198
+W+S+ AGY + A + F EM
Sbjct: 414 SWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV 473
Query: 199 -----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
D+ WN ++ YA+ G E+A LF E+ +D ++WN +ISG+ + KQAL
Sbjct: 474 YVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQAL 533
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
+F +M G + + T +S ++A A+L D++ GK+VH + T ++ NALI +
Sbjct: 534 MVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVK-TGHTSETEVANALISL 592
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
Y KCGSIE A +F M R+ +W+T+I + HG E++ +F +M++ ++P ++TF
Sbjct: 593 YGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTF 652
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------- 410
+GVL ACSH G VEEG YFK M + Y + P HY
Sbjct: 653 IGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMP 712
Query: 411 ----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
VH ++E+G LA K LL + +S YVLLSN YA G+W ++
Sbjct: 713 ITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQ 772
Query: 455 VRKLMDDSDIKKQPGCSLIEADD 477
VRK+M D I+K+PG S IE +
Sbjct: 773 VRKMMKDRGIRKEPGRSWIEVKN 795
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/489 (23%), Positives = 225/489 (46%), Gaps = 56/489 (11%)
Query: 9 SRLWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFV 63
S + CT + Q I A V F S++ LI Y G G+ A ++F
Sbjct: 148 SSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGF----GSFKLAERVFC 203
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
+ D +NT+I G AQ + A+ ++ +M+ ++P+ T + +L AC +
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G +H ++K G F+ SL+ + CGD+ TA +F+ + +VV W+ + Y +
Sbjct: 264 GKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQ 323
Query: 184 RGELSMARSLFDEMPV---------------------------------------RDLVS 204
+L+ + +F +M D+
Sbjct: 324 ISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYV 383
Query: 205 WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
V+I Y+K G ++KA ++ + KRDVVSW +MI+GYV ++AL F+EM+ G
Sbjct: 384 SGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGV 443
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
PD++ + S +ACA + + G ++H + ++ A + N L+++YA+CG E A
Sbjct: 444 WPDNIGLASAASACAGIKAMRQGLQIHARVY-VSGYAADISIWNTLVNLYARCGRSEEAF 502
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
+F + +D TW+ LI G ++++ +F +M + + TF+ + A ++
Sbjct: 503 SLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLA 562
Query: 385 KVEEGKK-YFKLMRDEYNIEPNIRH-----YGVHGDVELGRLANKRLLNMRKDESGDYVL 438
+++GK+ + + ++ + E + + YG G +E ++ +++R + S + ++
Sbjct: 563 DIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSE-MSLRNEVSWNTII 621
Query: 439 LSNIYASRG 447
S RG
Sbjct: 622 TSCSQHGRG 630
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 184/405 (45%), Gaps = 52/405 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F +++ D + ++ G AQS +A LY+QM ++ P + S VL
Sbjct: 92 GLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVL 151
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
ACT+ G +H ++ K F FV N+LI + G A +F D V
Sbjct: 152 SACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRV 211
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL------------------------------ 202
+++L +G+A+ G A +FDEM + L
Sbjct: 212 TFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYL 271
Query: 203 ----VSWNVMITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
+S++ + G Y K G++E A+++FN + +VV WN M+ Y ++
Sbjct: 272 LKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSF 331
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALID 312
E+F +M++ G P+ T +L C G +E+G+++H L + +G ++ LID
Sbjct: 332 EIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHS--LSIKNGFESDMYVSGVLID 389
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+K G +++A ++ + RDV +W+++I G H F EE++A F+EMQ V P I
Sbjct: 390 MYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIG 449
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVEL 417
AC AG K MR I + G D+ +
Sbjct: 450 LASAASAC--AG--------IKAMRQGLQIHARVYVSGYAADISI 484
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 169/378 (44%), Gaps = 58/378 (15%)
Query: 59 HKMFVKITEPDTF-MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
H+ K PD +++ A L + L ++ C + N++ VL+
Sbjct: 11 HRSLAKFIVPDNPEKILSLVAAKASHHRALGSADLTCALQACRGRGNRW--PLVLE---- 64
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+H V G +R + N LI +A G + A +F + D V+W ++
Sbjct: 65 ---------IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAM 115
Query: 178 TAGYARRGELSMARSLFDEM------PVRDLVS--------------------------- 204
+GYA+ G A L+ +M P ++S
Sbjct: 116 LSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAF 175
Query: 205 ------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
N +I Y G + A +F ++ D V++N +ISG+ CG + AL++F+E
Sbjct: 176 CSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDE 235
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M+ G RPD VT+ SLL ACA +GDL+ GK++H LL + G +L+D+Y KCG
Sbjct: 236 MQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEG-SLLDLYVKCG 294
Query: 319 SIERAIEVF-LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
IE A ++F LG R +V W+ ++ +S +F +MQ + P + T+ +L
Sbjct: 295 DIETAHDIFNLGDRT-NVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCIL 353
Query: 378 VACSHAGKVEEGKKYFKL 395
C+ G++E G++ L
Sbjct: 354 RTCTCTGQIELGEQIHSL 371
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/389 (23%), Positives = 157/389 (40%), Gaps = 71/389 (18%)
Query: 15 CTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
C ++ ++Q I A V ++G+ +D S L+ G A +F +I D
Sbjct: 457 CAGIKAMRQGLQIHARVYVSGYAADISIWNTLV--NLYARCGRSEEAFSLFREIEHKDEI 514
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+N +I G QS+ A+ ++ +M + K N FTF + A L G VHG+
Sbjct: 515 TWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRA 574
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
VK G V N+LI + CG + DAKM
Sbjct: 575 VKTGHTSETEVANALISLYGKCGSIE--------DAKM---------------------- 604
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+F EM +R+ VSWN +IT ++ G +
Sbjct: 605 -IFSEMSLRNEVSWNTIITSCSQHGR-------------------------------GLE 632
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
AL++F++M+ G +P+DVT + +L AC+ +G +E G ++ ++ H ++
Sbjct: 633 ALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVV 692
Query: 312 DMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
D+ + G ++RA M + W TL+ H E I L++ P +
Sbjct: 693 DILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIE--IGELAAKHLLELEPHD 750
Query: 371 -ITFVGVLVACSHAGKVEEGKKYFKLMRD 398
++V + A + GK + K+M+D
Sbjct: 751 SASYVLLSNAYAVTGKWANRDQVRKMMKD 779
>gi|222636781|gb|EEE66913.1| hypothetical protein OsJ_23761 [Oryza sativa Japonica Group]
Length = 595
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 152/436 (34%), Positives = 229/436 (52%), Gaps = 63/436 (14%)
Query: 96 MEKCSIKPNKFTFSFVLKACTRL-LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC- 153
M + PN FTF+F+L+AC L L R G CVHG+IV+ GF + FV+N+L+ + C
Sbjct: 1 MRAQGVPPNGFTFTFLLRACALLGLPRPCG-CVHGQIVRCGFGSDVFVQNALMDVYHRCG 59
Query: 154 -----------------------------------GDLNTASVLFDGDAKMDVVAWSSLT 178
GD A F+ + +VV+W+++
Sbjct: 60 GGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVV 119
Query: 179 AG-----------YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
AG YA G++ ARS+FD M +D+VSW M++ YAK G+++ NELF+
Sbjct: 120 AGNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDH 179
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEV 286
+P +++VSWNAMI+GY +AL F+ M G RPD+ T++S+++ACA LG +E
Sbjct: 180 MPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVE- 238
Query: 287 GKKVHCTLLDMTSGVAK----VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+C + G + V GNALIDM+AKCG + RA +F M R + TW+T+I
Sbjct: 239 ----YCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMI 294
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G AF+G +++ ++ M R V+ + F+ L AC+H G ++EG F M + YNI
Sbjct: 295 SGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNI 354
Query: 403 EPNIRHYG----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
+P + HYG + G EL +K++ + S VL+SN A G W+ V R
Sbjct: 355 QPRMEHYGCMVDLLGRAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTS 414
Query: 459 MDDSDIKKQPGCSLIE 474
M + I+K PG S I+
Sbjct: 415 MRNWGIEKVPGSSSIQ 430
>gi|297828247|ref|XP_002882006.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
gi|297327845|gb|EFH58265.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
Length = 412
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/374 (37%), Positives = 209/374 (55%), Gaps = 44/374 (11%)
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
L+ NC + AS LF + D+++W+S+ GY + G + A+ LFD MP RD+V+
Sbjct: 29 LLKCRCNC---SIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTC 85
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE- 264
MI GYAK G + +A LF+++P RDVV++N+M++GYV + +ALE+F +M
Sbjct: 86 ATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHL 145
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
PD+ T++ +L+A A LG L +H +++ + L G ALIDMY+KCGSI+ A+
Sbjct: 146 SPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKL-GVALIDMYSKCGSIQHAM 204
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
VF G+ ++ + W+ +IGGLA HG E + M +++RL + P +ITFVGVL ACSH+G
Sbjct: 205 LVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSG 264
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYGV--------------------------------- 411
V+EG F+LMR ++ IEP ++HYG
Sbjct: 265 LVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTF 324
Query: 412 ------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
H + E G L K L+ YVLLSN+YAS G W V +VR +M + I+
Sbjct: 325 LTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIE 384
Query: 466 KQPGCSLIEADDKA 479
K PGCS IE D +
Sbjct: 385 KIPGCSWIELDGRV 398
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 140/320 (43%), Gaps = 26/320 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G ++ A +F ++ D YN+++ G Q++ ++A+ ++ MEK S + P++ T +
Sbjct: 96 GFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVII 155
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + +H IV+ F + +LI ++ CG + A ++F+G +
Sbjct: 156 LSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI 215
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY---AKQGEMEKANELFNEV 228
W+++ G A G A ++ ++ ++ ++ G + K L E+
Sbjct: 216 DHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFEL 275
Query: 229 PKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+R + + M+ G + A + EEM P+DV + LTAC+
Sbjct: 276 MRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPI---EPNDVIWRTFLTACSHHK 332
Query: 283 DLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS---- 336
+ E G+ V H L + + VL L +MYA G + V M++R +
Sbjct: 333 EFETGELVAKHLILQAGYNPSSYVL----LSNMYASFGMWKDVRRVRTMMKERKIEKIPG 388
Query: 337 -TWSTLIGGLAFHGFAEESI 355
+W L G + H F +SI
Sbjct: 389 CSWIELDGRV--HEFFVDSI 406
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 165/556 (29%), Positives = 267/556 (48%), Gaps = 100/556 (17%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-EPD 69
L K+C + +TL+QI TI+ + + L + I Y+ +F IT P+
Sbjct: 27 LLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISLKD------FTYSTLIFSHITPHPN 80
Query: 70 TFMYNTIIRGSAQSQN--PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
+ +N ++R + + + PL + LY QM+ +I PN FTF FV AC L M
Sbjct: 81 DYAFNIMLRATTTTWHDYPL-TLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLA 139
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H ++ K G + + NS++ + CG+ A +FD + D+V+W+SL +GYA+ G
Sbjct: 140 HCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFA 199
Query: 188 SMARSLF-----------DEMPV------------RDLVSW-----------------NV 207
A +F DEM + +L W +
Sbjct: 200 REAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSA 259
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+I+ Y+K GE+ + +F+ +P RD ++WNA IS Y GM +A+ +F M+ G P+
Sbjct: 260 LISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPN 319
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH----GNALIDMYAKCGSIERA 323
VT+ ++L+ACA +G L++GK+ +D + + H ALIDMYAKCGS+E A
Sbjct: 320 KVTLTAVLSACASIGALDLGKQ-----MDEYATHRGLQHDIFVATALIDMYAKCGSLESA 374
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM--QRLKVRPTEITFVGVLVACS 381
VF M ++ ++W+ +I LA HG A+E++++F M + RP +ITFV +L AC
Sbjct: 375 QRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACV 434
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGD--------------------------- 414
HAG V+EG + F +M + + P I HY D
Sbjct: 435 HAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTL 494
Query: 415 ------------VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462
V++G + LL + SG+Y++ S IY + W+ ++R LM ++
Sbjct: 495 GALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMREN 554
Query: 463 DIKKQPGCSLIEADDK 478
+ K PGCS IE ++
Sbjct: 555 GVTKTPGCSWIEVGNQ 570
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 145/496 (29%), Positives = 246/496 (49%), Gaps = 77/496 (15%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
+ ++F +I + + + ++I G Q+ + + L+ +M + ++ N++T ++ ACT+
Sbjct: 191 SRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTK 250
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L + G VHG ++K GF+ N F+ L+ + CGD+ A +FD + +D+V+W+++
Sbjct: 251 LGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAM 310
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVS--------------------------------- 204
GYA+RG A LF + +DL+
Sbjct: 311 IVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGS 370
Query: 205 -----WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
N ++ YAK + A +F V +DV++WN++ISGY G +ALE+F++M
Sbjct: 371 EDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQM 430
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
RS PD +T++S+L+ACA +G VG +H + V G AL++ YAKCG
Sbjct: 431 RSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGD 490
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
E A +F M +++ TWS +IGG G S+ +F +M + K+ P E+ F +L A
Sbjct: 491 AESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSA 550
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSH+G + EG +YF M YN P+++HY
Sbjct: 551 CSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVS 610
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+H +LG +A +R+L + D++ YVL+SN+YAS G W++ +V +LM
Sbjct: 611 LLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMK 670
Query: 461 DSDIKKQPGCSLIEAD 476
+ K PG SL++ +
Sbjct: 671 QRGLAKLPGWSLVDIE 686
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 130/417 (31%), Positives = 199/417 (47%), Gaps = 49/417 (11%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVKITEPDTFMY 73
C + +L++I AL+ ++G + D +L+ GS G + A MF +I PD + +
Sbjct: 49 CKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSF---GHVECARLMFDRIRNPDLYSW 105
Query: 74 NTIIRGSAQSQNPLDAVFLY-TQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+IR + + + V Y T++ KC + + FS VLKAC+ L + G +H +IV
Sbjct: 106 KVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIV 165
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K G + FV L+ +A C ++ + +FD +VV W+S+ GY + L
Sbjct: 166 KVGSP-DSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLV 224
Query: 193 LFDEMPVRDLVSWNVMITG----------------------------------------Y 212
LF+ M LV N G Y
Sbjct: 225 LFNRMR-EGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLY 283
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
K G++ A +F+E+ D+VSW AMI GY G ++AL++F + R P+ VT
Sbjct: 284 FKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTS 343
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
S+L+ACA G L +G+ VHC L + G NAL+DMYAKC I A VF + D
Sbjct: 344 SVLSACAQTGSLNMGRSVHC--LGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFD 401
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+DV W+++I G +G+A E++ +F +M+ V P IT V VL AC+ G G
Sbjct: 402 KDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVG 458
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 115/443 (25%), Positives = 201/443 (45%), Gaps = 58/443 (13%)
Query: 4 NRHRSSRLWKKCTNLRTLKQ---IQALVTINGFNSDS---SALRELIYSGSVVIPGAINY 57
N++ L CT L L Q + V +GF+ +S + L +L + G I
Sbjct: 237 NQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFK-----CGDIRD 291
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A +F +++ D + +I G AQ P +A+ L+T + PN T S VL AC +
Sbjct: 292 AFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQ 351
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
NMG VH +K G E F N+L+ +A C + A +F+ DV+AW+S+
Sbjct: 352 TGSLNMGRSVHCLGIKLGSEDATF-ENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSI 410
Query: 178 TAGYARRGELSMARSLFDEMPVRD-----------------------------------L 202
+GY + G A LFD+M L
Sbjct: 411 ISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGL 470
Query: 203 VSWNV-----MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
+S +V ++ YAK G+ E A +F+E+ +++ ++W+AMI GY + G ++LE+F
Sbjct: 471 LSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFG 530
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
+M P++V ++L+AC+ G L G + T+ + + V + H ++D+ A+
Sbjct: 531 DMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARA 590
Query: 318 GSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
G +E A++ + + DVS + G H + R M L++ P + + V
Sbjct: 591 GRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRM--LELHPDKACYY-V 647
Query: 377 LVACSHA--GKVEEGKKYFKLMR 397
L++ +A G+ + + +LM+
Sbjct: 648 LMSNLYASEGRWSQANQVMELMK 670
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 1/183 (0%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
++ YAK E+E + +F+E+ R+VV W +MI GYV K+ L +F MR +
Sbjct: 178 LVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGN 237
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
T+ SL+TAC LG L GK VH ++ + L L+D+Y KCG I A VF
Sbjct: 238 QYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFL-VTPLLDLYFKCGDIRDAFSVF 296
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
+ D+ +W+ +I G A G+ E++ +F + + + P +T VL AC+ G +
Sbjct: 297 DELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLN 356
Query: 388 EGK 390
G+
Sbjct: 357 MGR 359
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 3/191 (1%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE-EM 259
DL+ +++ Y G +E A +F+ + D+ SW MI Y L + ++ + +
Sbjct: 70 DLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRL 129
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
R D+V +L AC++L + + G+K+HC ++ + S + VL G L+DMYAKC
Sbjct: 130 RKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTG--LVDMYAKCRE 187
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
+E + VF + DR+V W+++I G + +E + +F M+ V + T ++ A
Sbjct: 188 VEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTA 247
Query: 380 CSHAGKVEEGK 390
C+ G + +GK
Sbjct: 248 CTKLGALHQGK 258
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 135/297 (45%), Gaps = 25/297 (8%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I A +F + + D +N+II G Q+ +A+ L+ QM S+ P+ T VL A
Sbjct: 389 IGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSA 448
Query: 115 CTRLLYRNMGFCVHGKIVKYG-FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
C + +G +HG +K G + +V +L+ F+A CGD +A V+FD + + +
Sbjct: 449 CASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTIT 508
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVP 229
WS++ GY +G+ S + LF +M L V + +++ + G + + FN +
Sbjct: 509 WSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMC 568
Query: 230 K-----RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA----- 279
+ + + M+ G ++AL+ E+ + +PD + + L C
Sbjct: 569 QVYNFVPSMKHYACMVDLLARAGRLEEALDFIEK---IPIQPDVSLLGAFLHGCRLHSRF 625
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
DLG++ V + + L VL N +YA G +A +V M+ R ++
Sbjct: 626 DLGEVAVRRMLE---LHPDKACYYVLMSN----LYASEGRWSQANQVMELMKQRGLA 675
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 250/473 (52%), Gaps = 54/473 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL--DAVFLYTQMEKCSIKPNKFTFSF 110
G ++ A K+F KI P+T + I+ A ++ +A+ +++M+K ++PN+F
Sbjct: 76 GQLSNARKLFDKI--PNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPS 133
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
+LKAC L R G +H I+K FE + ++ ++LIY ++ CG + A +FD D
Sbjct: 134 ILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKD 193
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFN 226
+V +++ +GYA+ G + A +L +M ++VSWN +I G+++ G+ +E+F
Sbjct: 194 LVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFR 253
Query: 227 EVP----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ + DVVSW ++ISG+V N + + F+EM G P VT+ SLL AC ++
Sbjct: 254 LMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVA 313
Query: 283 DLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
+L GK++H M GV K V +AL+DMYAKCG I A +F M +R+ TW++L
Sbjct: 314 NLRHGKEIHG--YAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSL 371
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I G A HG+ E+I +F +M+ + +TF VL ACSHAG VE G+ F+ M+++Y
Sbjct: 372 IFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYR 431
Query: 402 IEPNIRHYGV---------------------------------------HGDVELGRLAN 422
IEP + HY HG++EL +A
Sbjct: 432 IEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAA 491
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
+ L + + G +LLSN+YA G W K++K+M K PGCS IEA
Sbjct: 492 EHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIEA 544
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 6/230 (2%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNEVPKRDVVSW 236
YAR L R+L + + L +++ Y + G++ A +LF+++P ++ W
Sbjct: 37 YARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRW 96
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
+ G ++AL F EM+ G RP+ + S+L AC L D G+ +H +L
Sbjct: 97 IVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILK 156
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
S + +ALI MY+KCG +E+A VF + D+D+ + ++ G A HGF E++
Sbjct: 157 -NSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALN 215
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
+ ++MQ+ V+P +++ ++ S G + F+LM +EP++
Sbjct: 216 LVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTAN-GVEPDV 264
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 167/368 (45%), Gaps = 24/368 (6%)
Query: 2 RTNRHRSSRLWKKCTNL---RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYA 58
R N+ + K C +L RT + + ++ N F SD+ + LIY S G + A
Sbjct: 125 RPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKC--GHVEKA 182
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
++F I + D + N ++ G AQ +A+ L +M++ +KPN +++ ++ +++
Sbjct: 183 CRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQV 242
Query: 119 LYRNM---------GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
++M V +V + + FV+N FH + G + + D
Sbjct: 243 GDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQN----FHNHEG-FDAFKEMLDQGFCP 297
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPV----RDLVSWNVMITGYAKQGEMEKANELF 225
V SSL L + + V +D+ + ++ YAK G + +A LF
Sbjct: 298 SSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILF 357
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+P+R+ V+WN++I GY G +A+E+F +M + D +T ++L AC+ G +E
Sbjct: 358 YMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVE 417
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGG 344
+G+ + + + ++ H ++D+ + G + A ++ M + D W L+G
Sbjct: 418 LGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGA 477
Query: 345 LAFHGFAE 352
HG E
Sbjct: 478 CRNHGNIE 485
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 169/560 (30%), Positives = 268/560 (47%), Gaps = 90/560 (16%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSV---------VIPGAINYAHKMFVKITEP 68
LR ++++ A + G + D +LI S ++ V A+ + F P
Sbjct: 111 LRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPF-----P 165
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-LYRNMGFCV 127
+ T A + N L L ++ + FT+SF++KA L G
Sbjct: 166 SSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRG--A 223
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H +VK G + FV N+LI ++ L+ A +FD DVV+W++ A R+GE+
Sbjct: 224 HAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEV 283
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV--- 244
ARS+FDEMP +D VSWN M+ GYAK GE EKA ELF +P R+VVSW+ ++S Y
Sbjct: 284 DAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKG 343
Query: 245 -------------------------LC---GMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
C G+ ++A +F EM D + ++S+L
Sbjct: 344 DMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILA 403
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF-LGMRDRDV 335
ACA+ G L +GK++H + + ++ NAL+DM+ KCG + RA +F + ++D+
Sbjct: 404 ACAESGSLALGKRIHRHVRQRKLSRSTLV-CNALMDMFCKCGCVNRADYIFDTEIVEKDL 462
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
+W+ +IGG A HG E+++ +F +M++ P +T + VL AC+H G VEEG+++F
Sbjct: 463 VSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFAN 522
Query: 396 MRDEYNIEPNIRHYG---------------------------------------VHGDVE 416
M +Y I+P I HYG +H +VE
Sbjct: 523 METDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVE 582
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
LA L N++ +G+Y +LSNIYA G+W+ + K R M + +K G S IE +
Sbjct: 583 YAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELN 642
Query: 477 DKAFLQYLFNLKPKPNSGNL 496
+ AF ++ + P S +
Sbjct: 643 E-AFHEFTVGDRKHPESDQI 661
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 157/506 (31%), Positives = 254/506 (50%), Gaps = 80/506 (15%)
Query: 43 LIYSGSVVIPGAINYAHKMF-VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CS 100
L+ S S V I YA K+F + D+F+ N++I+ +++ D+ LY + K
Sbjct: 17 LVISASAV---GIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETC 73
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
P+ FTF+ + K+C+ + G +H +I ++GF + +V ++ +A G + A
Sbjct: 74 FAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCAR 133
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEME 219
FD V+W++L +GY R GEL +A LFD+MP V+D+V +N M+ G+ K G+M
Sbjct: 134 NAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMT 193
Query: 220 KANELFNEV-------------------------------PKRDVVSWNAMISGYVLCGM 248
A LF+E+ P+R++VSWN MI GY
Sbjct: 194 SARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQ 253
Query: 249 NKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
++ + +F+EM++ PDDVT+LS+L A +D G L +G+ HC + KV
Sbjct: 254 PQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHC-FVQRKKLDKKVKVC 312
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
A++DMY+KCG IE+A +F M ++ V++W+ +I G A +G A ++ +F M ++ +
Sbjct: 313 TAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMM-IEEK 371
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------------- 411
P EIT + V+ AC+H G VEEG+K+F +MR E + I HYG
Sbjct: 372 PDEITMLAVITACNHGGLVEEGRKWFHVMR-EMGLNAKIEHYGCMVDLLGRAGSLKEAED 430
Query: 412 -----------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+ D+E K+ + + G+YVLL N+YA+
Sbjct: 431 LITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKR 490
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIE 474
W+ V+ +M + KK+ GCSLIE
Sbjct: 491 WDDFGMVKNVMRKNQAKKEVGCSLIE 516
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 163/556 (29%), Positives = 254/556 (45%), Gaps = 111/556 (19%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
++RTL+ + + + + +SS +L+ + + + + A K+F +I E + + N +
Sbjct: 54 DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASL--KDVASARKVFDEIPERNVIIINVM 111
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
IR + + V ++ M C+++P+ +TF VLKAC+ +G +HG K G
Sbjct: 112 IRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGL 171
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
FV N L+ + CG LS AR + DE
Sbjct: 172 SSTLFVGNGLVSMYGKCG-------------------------------FLSEARLVLDE 200
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANE--------------------------------- 223
M RD+VSWN ++ GYA+ + A E
Sbjct: 201 MSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVM 260
Query: 224 ----LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
+F ++ K+ +VSWN MI Y+ M +A+E++ M + G PD V++ S+L AC
Sbjct: 261 YVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACG 320
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
D L +GKK+H ++ + +L NALIDMYAKCG +E+A +VF M+ RDV +W+
Sbjct: 321 DTSALSLGKKIH-GYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+I F G +++A+F ++Q + P I FV L ACSHAG +EEG+ FKLM D
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y I P + H VH D ++G L
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
A +L + ++SG YVLLSNIYA G W V +R +M +KK PG S +E ++
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEV-NRII 558
Query: 481 LQYLFNLKPKPNSGNL 496
+L + P S +
Sbjct: 559 HTFLVGDRSHPQSDEI 574
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 141/419 (33%), Positives = 217/419 (51%), Gaps = 75/419 (17%)
Query: 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165
FTF FVLK+ LL MG CVHG I++ G +F+ +V SLI + CG++N A +FD
Sbjct: 135 FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDN 194
Query: 166 DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF 225
DV +W++L AGY + G + A ++F+ MP R++VSW MI+GY++ G ++A LF
Sbjct: 195 MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLF 254
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+E+ K D G RP+ VT++S+L ACA L LE
Sbjct: 255 DEMVKED-----------------------------SGVRPNWVTIMSVLPACAQLSTLE 285
Query: 286 VGKKVH--CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTL 341
G+++H + + S + ++ AL MYAKCGS+ A F L ++++ W+T+
Sbjct: 286 RGRQIHELACRMGLNSNASVLI---ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTM 342
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I A +G ++++ FREM + ++P +ITF G+L CSH+G V+ G KYF M Y+
Sbjct: 343 ITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYS 402
Query: 402 IEPNIRHYGV---------------------------------------HGDVELGRLAN 422
I P + HY H ++E+ A
Sbjct: 403 INPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAA 462
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFL 481
++L + + +G+YVLLSN+YA G W V+K+R ++ KK PGCS IE + KA +
Sbjct: 463 RKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHM 521
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 143/341 (41%), Gaps = 33/341 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSF 110
G I+ A +F ++ + + T+I G +QS A+ L+ +M E ++PN T
Sbjct: 214 GCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMS 273
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD--GDAK 168
VL AC +L G +H + G N V +L +A CG L A FD +
Sbjct: 274 VLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNE 333
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANEL 224
+++AW+++ YA G A S F EM D +++ +++G + G ++ +
Sbjct: 334 KNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKY 393
Query: 225 FNEVPKRDVVSWNAMISGYV-LCGMNKQALEMFEEMRSVGERP---DDVTMLSLLTACAD 280
FN + S N + Y + + +A + E + VGE P SLL AC
Sbjct: 394 FNHM--STTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRK 451
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALI--DMYAKCGSIE-----RAIEVFLGMRDR 333
+LE+ + L + GN ++ +MYA+ G + RAI G +
Sbjct: 452 HRNLEMAETAARKLFVLEPENT----GNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKS 507
Query: 334 DVSTW-------STLIGGLAFHGFAEESIAMFREMQRLKVR 367
+W +GG H +E I MF E K++
Sbjct: 508 PGCSWIEINGKAHMFLGGDTSHPQGKE-IYMFLEALPEKMK 547
>gi|356495177|ref|XP_003516456.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g45350, chloroplastic-like [Glycine max]
Length = 426
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 221/403 (54%), Gaps = 14/403 (3%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYS-------GSVVIPGAINYAHKMFVKIT 66
KCT + Q+ A + GF + S +L+ S V + Y H F
Sbjct: 26 KCTTTEQVNQLHARMITTGFIKNPSLAAKLVLSFISSPHEPLVEFARYVFYMHHAFHDFC 85
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
D F +N +IR + + P A+ L M + ++ + ++FS VLKAC ++
Sbjct: 86 N-DPFFWNPLIRSHSHGREPRGALVLLCLMIEYGVRLDGYSFSLVLKACAKVGLVREXVQ 144
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VHG + K F + F++N LI CG + A +FD DVV+++S+ GY + G
Sbjct: 145 VHGLLWKMNFGSDVFLQNCLIVLFVRCGCVELARQVFDRMPDRDVVSYNSMIVGYVKCGA 204
Query: 187 LSMARSLFDEMPVRDLVSWNVMI----TGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
+ AR LFD M R+L++WN MI G AK G++ A LF+E+P+RDV S N+M++G
Sbjct: 205 VERARELFDGMEERNLITWNSMIGGLIDGXAKSGDVLAATRLFDEMPRRDVNSCNSMMAG 264
Query: 243 YVLCGMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
YV G +AL++F +M RS PDD T+L ++TA A LG +E G V +++ +
Sbjct: 265 YVQNGCCIEALKIFYDMKRSTNVVPDDTTLLIVITAFAQLGHVEDGVVVRHYIMEKGYSL 324
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
L G ALIDMY+KCGSIE AI VF + + V WS +IGGL HG E + EM
Sbjct: 325 NGKL-GVALIDMYSKCGSIENAISVFENVEQKCVDHWSAMIGGLDIHGMDEMTFEFLMEM 383
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
R+ V P +ITF+GVL AC HAG ++EG F+LM+ Y +EP
Sbjct: 384 GRISVIPDDITFIGVLSACRHAGMLKEGLICFELMQKAYKLEP 426
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 169/560 (30%), Positives = 268/560 (47%), Gaps = 90/560 (16%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSV---------VIPGAINYAHKMFVKITEP 68
LR ++++ A + G + D +LI S ++ V A+ + F P
Sbjct: 39 LRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPF-----P 93
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-LYRNMGFCV 127
+ T A + N L L ++ + FT+SF++KA L G
Sbjct: 94 SSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRG--A 151
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H +VK G + FV N+LI ++ L+ A +FD DVV+W++ A R+GE+
Sbjct: 152 HAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEV 211
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV--- 244
ARS+FDEMP +D VSWN M+ GYAK GE EKA ELF +P R+VVSW+ ++S Y
Sbjct: 212 DAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKG 271
Query: 245 -------------------------LC---GMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
C G+ ++A +F EM D + ++S+L
Sbjct: 272 DMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILA 331
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF-LGMRDRDV 335
ACA+ G L +GK++H + + ++ NAL+DM+ KCG + RA +F + ++D+
Sbjct: 332 ACAESGSLALGKRIHRHVRQRKLSRSTLV-CNALMDMFCKCGCVNRADYIFDTEIVEKDL 390
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
+W+ +IGG A HG E+++ +F +M++ P +T + VL AC+H G VEEG+++F
Sbjct: 391 VSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFAN 450
Query: 396 MRDEYNIEPNIRHYG---------------------------------------VHGDVE 416
M +Y I+P I HYG +H +VE
Sbjct: 451 METDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVE 510
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
LA L N++ +G+Y +LSNIYA G+W+ + K R M + +K G S IE +
Sbjct: 511 YAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELN 570
Query: 477 DKAFLQYLFNLKPKPNSGNL 496
+ AF ++ + P S +
Sbjct: 571 E-AFHEFTVGDRKHPESDQI 589
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 157/506 (31%), Positives = 254/506 (50%), Gaps = 80/506 (15%)
Query: 43 LIYSGSVVIPGAINYAHKMF-VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CS 100
L+ S S V I YA K+F + D+F+ N++I+ +++ D+ LY + K
Sbjct: 17 LVISASAV---GIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETC 73
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
P+ FTF+ + K+C+ + G +H +I ++GF + +V ++ +A G + A
Sbjct: 74 FAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCAR 133
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEME 219
FD V+W++L +GY R GEL +A LFD+MP V+D+V +N M+ G+ K G+M
Sbjct: 134 NAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMT 193
Query: 220 KANELFNEV-------------------------------PKRDVVSWNAMISGYVLCGM 248
A LF+E+ P+R++VSWN MI GY
Sbjct: 194 SARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQ 253
Query: 249 NKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
++ + +F+EM++ PDDVT+LS+L A +D G L +G+ HC + KV
Sbjct: 254 PQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHC-FVQRKKLDKKVKVC 312
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
A++DMY+KCG IE+A +F M ++ V++W+ +I G A +G A ++ +F M ++ +
Sbjct: 313 TAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMM-IEEK 371
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------------- 411
P EIT + V+ AC+H G VEEG+K+F +MR E + I HYG
Sbjct: 372 PDEITMLAVITACNHGGLVEEGRKWFHVMR-EMGLNAKIEHYGCMVDLLGRAGSLKEAED 430
Query: 412 -----------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+ D+E K+ + + G+YVLL N+YA+
Sbjct: 431 LITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKR 490
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIE 474
W+ V+ +M + KK+ GCSLIE
Sbjct: 491 WDDFGMVKNVMRKNQAKKEVGCSLIE 516
>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 647
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 219/379 (57%), Gaps = 42/379 (11%)
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
F N NS++ + GD+ +A LFD + D +W+++ +GY + + A LF
Sbjct: 271 FRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFR 330
Query: 196 EMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
EMP+ D++SWN++++G+A++G++ A + F +P ++++SWN++I+GY K A+++
Sbjct: 331 EMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQL 390
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
F M+ GERPD T+ S+++ C L +L +GK++H + + + + N+LI MY+
Sbjct: 391 FSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDSPI--NNSLITMYS 448
Query: 316 KCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
+CG+I A VF ++ +DV TW+ +IGG A HG A E++ +F+ M+RLK+ PT ITF+
Sbjct: 449 RCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTYITFI 508
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
V+ AC+HAG VEEG++ FK M ++Y IE + H+
Sbjct: 509 SVMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPF 568
Query: 411 ---------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
VH +VEL +A L+ + + S YVLL NIYA+ G+W+ E V
Sbjct: 569 KPDKAVWGALLSACRVHNNVELALVAADALIRLEPESSAPYVLLYNIYANLGQWDDAESV 628
Query: 456 RKLMDDSDIKKQPGCSLIE 474
R LM++ ++KKQ G S ++
Sbjct: 629 RVLMEEKNVKKQAGYSWVD 647
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 155/315 (49%), Gaps = 31/315 (9%)
Query: 154 GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY- 212
G L+ A LFD D V W+S+ GY R E++ AR LFDEMP RD+VSWN++++GY
Sbjct: 53 GRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVVSWNLIVSGYF 112
Query: 213 AKQGE--MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
+ +G +E+ LF +P+RD VSWN +ISGY G QAL++F M ER + V+
Sbjct: 113 SCRGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAM---PER-NAVS 168
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF--L 328
+L+T GD++ T+ + S +ALI + G ++ A +
Sbjct: 169 SNALITGFLLNGDVDSAVDFFRTMPEHYSTSL-----SALISGLVRNGELDMAAGILCEC 223
Query: 329 GMRDRD-VSTWSTLIGGLAFHGFAEESIAMF----------REMQRLKVRPTEITFVGVL 377
G D D V ++TLI G G EE+ +F E QR + R +++ ++
Sbjct: 224 GNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQR-RFRRNVVSWNSMM 282
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRL--ANKRLLNMRKDESGD 435
+ AG + ++ F M ++ N + G V++ + A+K M +
Sbjct: 283 MCYVKAGDIVSARELFDRMVEQDTCSWNTM---ISGYVQISNMEEASKLFREMPIPDVLS 339
Query: 436 YVLLSNIYASRGEWN 450
+ L+ + +A +G+ N
Sbjct: 340 WNLIVSGFAQKGDLN 354
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 113/220 (51%), Gaps = 13/220 (5%)
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
R G LS AR+LFD M RD V+WN MITGY + E+ +A +LF+E+P+RDVVSWN ++SG
Sbjct: 51 RSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVVSWNLIVSG 110
Query: 243 YVLCGMNK---QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
Y C ++ + +FE M + D V+ ++++ A G ++ K+ + + +
Sbjct: 111 YFSCRGSRFVEEGRRLFELM----PQRDCVSWNTVISGYAKNGRMDQALKLFNAMPERNA 166
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ NALI + G ++ A++ F M + ++ S LI GL +G + + +
Sbjct: 167 -----VSSNALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNGELDMAAGILC 221
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
E + ++ G VEE ++ F + D+
Sbjct: 222 ECGNGDDDLVH-AYNTLIAGYGQRGHVEEARRLFDGIPDD 260
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/412 (20%), Positives = 169/412 (41%), Gaps = 63/412 (15%)
Query: 33 FNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFL 92
+N+ S R +++ G ++ A +F + DT +N++I G + A L
Sbjct: 33 YNNSSPLNRSNKKISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQL 92
Query: 93 YTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK-IVKYGFEFNRFVRNSLIYFHA 151
+ +M P + S+ L R F G+ + + + + N++I +A
Sbjct: 93 FDEM------PRRDVVSWNLIVSGYFSCRGSRFVEEGRRLFELMPQRDCVSWNTVISGYA 146
Query: 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG 211
G ++ A LF+ + + V+ ++L G+ G++ A F MP S + +I+G
Sbjct: 147 KNGRMDQALKLFNAMPERNAVSSNALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISG 206
Query: 212 YAKQGEM----------------------------------EKANELFNEVP-------- 229
+ GE+ E+A LF+ +P
Sbjct: 207 LVRNGELDMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDE 266
Query: 230 -----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
+R+VVSWN+M+ YV G A E+F+ M D + ++++ + ++
Sbjct: 267 GQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRM----VEQDTCSWNTMISGYVQISNM 322
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
E K+ + + VL N ++ +A+ G + A + F M +++ +W+++I G
Sbjct: 323 EEASKLFREM-----PIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAG 377
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+ + +I +F MQ RP T V+ C+ + GK+ +L+
Sbjct: 378 YEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLV 429
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 86/225 (38%), Gaps = 38/225 (16%)
Query: 2 RTNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYA 58
R +RH S + CT L L KQI LVT DS LI S GAI A
Sbjct: 400 RPDRHTLSSVMSVCTGLVNLYLGKQIHQLVT-KIVIPDSPINNSLITMYSRC--GAIVDA 456
Query: 59 HKMFVKIT-EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
+F +I D +N +I G A +A+ L+ M++ I P TF V+ AC
Sbjct: 457 CTVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTYITFISVMNACA- 515
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
H +V+ G S++ D + V ++SL
Sbjct: 516 ----------HAGLVEEGRR-------------------QFKSMINDYGIERRVEHFASL 546
Query: 178 TAGYARRGELSMARSLFDEMPVR-DLVSWNVMITGYAKQGEMEKA 221
R+G+L A L + MP + D W +++ +E A
Sbjct: 547 VDILGRQGQLQEAMDLINTMPFKPDKAVWGALLSACRVHNNVELA 591
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 209/350 (59%), Gaps = 49/350 (14%)
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G+L++A LFDEMP +D V+ + MIT Y E A ++F +P++D+V+WN++I+G+
Sbjct: 29 GDLNLACKLFDEMPHKDTVTLDTMITAY-----FESAYKVFELMPEKDIVAWNSVINGFA 83
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
L G +AL +++ M S G PD TM+SLL+ACA+L L +G++ H ++ + G+ K
Sbjct: 84 LNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKV--GLNKN 141
Query: 305 LHGN-ALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
LH N AL+D+YAKCG+I A ++F M +R+V +W++LI GLA +GF +E++ F++M+
Sbjct: 142 LHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDME 201
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------ 410
R + P+EITFVGVL ACSH G V EG +YFK M+++Y+I P I HYG
Sbjct: 202 REGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLL 261
Query: 411 ---------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
+HG + LG A RLL + +SGDYVLLSN+Y
Sbjct: 262 KEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSGDYVLLSNLY 321
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
AS W+ V +VR+ M ++K PG SL+E + +++ + P S
Sbjct: 322 ASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVH-EFVMGDRTHPQS 370
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 13/250 (5%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A+K+F + E D +N++I G A + P +A+ LY +M ++P+ FT +L AC
Sbjct: 60 AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAE 119
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKMDVVAWSS 176
L +G H +VK G N N+L+ +A CG ++ A +FD + +VV+W+S
Sbjct: 120 LATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTS 179
Query: 177 LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG--YAKQ--GEMEKANELFNEVPKR- 231
L G A G A F +M LV + G YA G + + E F + ++
Sbjct: 180 LIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQY 239
Query: 232 DVVS----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
D+V + M+ G+ K+A + ++M +P+ V +LL AC G L +G
Sbjct: 240 DIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPL---QPNAVIWRTLLGACTIHGHLGLG 296
Query: 288 KKVHCTLLDM 297
LL +
Sbjct: 297 AFARARLLQL 306
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 71/312 (22%)
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANC--GDLNTASVLFDGDA------------------ 167
H + VK G + +V N+++ ++ C GDLN A LFD
Sbjct: 1 HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESA 60
Query: 168 --------KMDVVAWSSLTAGYARRGELSMARSLFDEMPV-------------------- 199
+ D+VAW+S+ G+A G+ + A +L+ M
Sbjct: 61 YKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAEL 120
Query: 200 -------------------RDLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAM 239
++L + N ++ YAK G + +A ++F+E+ +R+VVSW ++
Sbjct: 121 ATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSL 180
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
I G + G K+ALE F++M G P ++T + +L AC+ G + G + + +
Sbjct: 181 IVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYD 240
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMF 358
V ++ H ++D+ + G ++ A + M + W TL+G HG + F
Sbjct: 241 IVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHL--GLGAF 298
Query: 359 REMQRLKVRPTE 370
+ L++ P +
Sbjct: 299 ARARLLQLEPKD 310
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 155/503 (30%), Positives = 243/503 (48%), Gaps = 83/503 (16%)
Query: 57 YAHKMFVKITEPDTFMYNTIIR--GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
YA ++ ++ +++++I + N + Y M + + P++ TF +LKA
Sbjct: 54 YARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKA 113
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
+L N F H IVK+G + + FVRNSLI +++ G + AS LFDG DVV W
Sbjct: 114 VFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTW 172
Query: 175 SSLTAGYARRGELSMARSLFDEMP-----------------------VR----------- 200
+++ G+ R G S A F EM VR
Sbjct: 173 TAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLE 232
Query: 201 ------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
D+ + ++ Y K + A ++F+E+P R+VV+W A+I+GYV + +
Sbjct: 233 TGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGML 292
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314
+FEEM P++ T+ S+L+ACA +G L G++VHC ++ + + G LID+Y
Sbjct: 293 VFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEI-NTTAGTTLIDLY 351
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
KCG +E AI VF + +++V TW+ +I G A HG+A ++ +F M V P E+TF+
Sbjct: 352 VKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFM 411
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
VL AC+H G VEEG++ F M+ +N+EP HY
Sbjct: 412 AVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPM 471
Query: 411 ---------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
+H D ELG+ A R++ ++ SG Y LL+N+Y+ W+ V +V
Sbjct: 472 EPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARV 531
Query: 456 RKLMDDSDIKKQPGCSLIEADDK 478
RK M D + K PG S IE K
Sbjct: 532 RKQMKDQQVVKSPGFSWIEVKGK 554
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 154/482 (31%), Positives = 236/482 (48%), Gaps = 81/482 (16%)
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+NT +R A+ L A+ LY QM + +PN FTF F LK+C L +G HG+I
Sbjct: 17 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD--AKMDVVAWSSLTAGYARRGELSMA 190
K G F FV+ LI + ++ A +F+ + ++ V +++L +GY + S A
Sbjct: 77 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136
Query: 191 RSLFDEM-----PVR----------------------------------DLVSWNVMITG 211
LF +M PV D+ N IT
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 196
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
Y K G + A +LF+E+P + ++SWNAM+SGY G+ LE++ M G PD VT+
Sbjct: 197 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 256
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
+ +L++CA+LG VG +V + + + NALI+MYA+CG++ +A VF GM
Sbjct: 257 VGVLSSCANLGAQSVGHEVEFKI-QASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP 315
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+R + +W+ +IGG HG E ++ +F+EM R + P FV VL ACSHAG ++G +
Sbjct: 316 ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE 375
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
YFK+M+ Y +EP HY +H
Sbjct: 376 YFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIH 435
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
+VEL LA +R++ + + G YVLLSNIY++ V ++R +M + +KK PGCS
Sbjct: 436 KNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSY 495
Query: 473 IE 474
+E
Sbjct: 496 VE 497
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 152/348 (43%), Gaps = 42/348 (12%)
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
T YN ++ G + +AV L+ QM + + N T ++ AC + +G +H
Sbjct: 117 TVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHC 176
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+KYGF+ + V N I + CG +N A LFD +++W+++ +GYA+ G +
Sbjct: 177 STLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATN 236
Query: 190 ARSLFDEMPVR----DLVSW-----------------------------------NVMIT 210
L+ M + D V+ N +I
Sbjct: 237 VLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALIN 296
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
YA+ G + KA +F+ +P+R +VSW A+I GY + G + A+++F+EM G PD
Sbjct: 297 MYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTA 356
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
+ +L+AC+ G + G + + H + ++D+ + G ++ A + M
Sbjct: 357 FVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESM 416
Query: 331 RDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
+ D + W L+G H E + F + +++ P I + +L
Sbjct: 417 PIKPDGAVWGALLGACKIHKNVELAELAFERV--IELEPENIGYYVLL 462
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 128/267 (47%), Gaps = 16/267 (5%)
Query: 32 GFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF 91
GF+SD S + I + G++NYA K+F ++ +N ++ G AQ+ + +
Sbjct: 182 GFDSDVSVVNCFITM--YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLE 239
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151
LY M+ + P+ T VL +C L +++G V KI GF N F+ N+LI +A
Sbjct: 240 LYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYA 299
Query: 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR-----DLVSWN 206
CG+L A +FDG + +V+W+++ GY G +A LF EM +R D ++
Sbjct: 300 RCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM-IRSGIEPDGTAFV 358
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRS 261
+++ + G ++ E F + + + ++ M+ G K+A + E M
Sbjct: 359 CVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPI 418
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGK 288
+PD +LL AC ++E+ +
Sbjct: 419 ---KPDGAVWGALLGACKIHKNVELAE 442
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 159/532 (29%), Positives = 260/532 (48%), Gaps = 91/532 (17%)
Query: 4 NRHRSSRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIP-----GAI 55
N + + + C+ L + Q+ +L+ + F SD +Y GS ++ G +
Sbjct: 151 NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSD-------VYIGSALVDMYSKCGNV 203
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
N A ++F ++ + + +N++I Q+ ++A+ ++ M + ++P++ T + V+ AC
Sbjct: 204 NDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISAC 263
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
L +G VHG++VK N +RN D++ +
Sbjct: 264 ASLSAIKVGQEVHGRVVK-----NDKLRN-------------------------DIILSN 293
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
+ YA+ + AR +FD MP+R++++ MI+GYA + A +F ++ +R+VVS
Sbjct: 294 AFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVS 353
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WNA+I+GY G N++AL +F ++ P + ++L ACADL +L +G + H +L
Sbjct: 354 WNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVL 413
Query: 296 D----MTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
SG + GN+LIDMY KCG +E VF M +RD +W+ +I G A +G+
Sbjct: 414 KHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGY 473
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
E++ +FREM +P IT +GVL AC HAG VEEG+ YF M ++ + P HY
Sbjct: 474 GNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYT 533
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
VH ++ LG+ ++LL +
Sbjct: 534 CMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPS 593
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL--IEADDKAFL 481
SG YVLLSN+YA G+W V VRK M + KQPGCS I+ D F+
Sbjct: 594 NSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFM 645
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 145/265 (54%), Gaps = 32/265 (12%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VH ++K GF F++N LI ++ CG L DG
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLE------DG--------------------- 74
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
R +FD+MP R++ +WN ++TG K G +++A+ LF +P+RD +WN+M+SG+
Sbjct: 75 ----RQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQH 130
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
++AL F M G ++ + S+L+AC+ L D+ G +VH +L+ + ++ V
Sbjct: 131 DRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVH-SLIAKSPFLSDVYI 189
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
G+AL+DMY+KCG++ A VF M DR+V +W++LI +G A E++ +F+ M +V
Sbjct: 190 GSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRV 249
Query: 367 RPTEITFVGVLVACSHAGKVEEGKK 391
P E+T V+ AC+ ++ G++
Sbjct: 250 EPDEVTLASVISACASLSAIKVGQE 274
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 163/499 (32%), Positives = 251/499 (50%), Gaps = 80/499 (16%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+R +KQI NG + + +L+ IP ++YAHK+ +P F+YN +I
Sbjct: 1 MRQVKQIHGYTLRNGIDQTKILIEKLLE-----IPN-LHYAHKVLHHSPKPTLFLYNKLI 54
Query: 78 RG-SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
+ S+ Q+ LY+QM S PN+ TF+F+ ACT L ++G +H +K GF
Sbjct: 55 QAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGF 114
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E + F +L+ + G L A LFD V W+++ AG+AR G++ +A LF
Sbjct: 115 EPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRL 174
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP R++VSW MI+GY++ + +A LF L M
Sbjct: 175 MPSRNVVSWTTMISGYSRSKKYGEALGLF---------------------------LRME 207
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYA 315
+E G P+ VT+ S+ A A+LG LE+G++V +G K L+ NA+++MYA
Sbjct: 208 QEK---GMMPNAVTLASIFPAFANLGALEIGQRVEA--YARKNGFFKNLYVSNAVLEMYA 262
Query: 316 KCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
KCG I+ A +VF + R++ +W+++I GLA HG +++ ++ +M P ++TFV
Sbjct: 263 KCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFV 322
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
G+L+AC+H G VE+G+ FK M +NI P + HYG
Sbjct: 323 GLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPM 382
Query: 411 ---------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
H +VEL +A + L + G+YV+LSNIYAS G+W+ V K+
Sbjct: 383 KPDSVIWGALLGACSFHDNVELAEIAAESLFALEPWNPGNYVILSNIYASAGQWDGVAKL 442
Query: 456 RKLMDDSDIKKQPGCSLIE 474
RK+M S I K G S IE
Sbjct: 443 RKVMKGSKITKSAGHSFIE 461
>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
Length = 830
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 151/465 (32%), Positives = 236/465 (50%), Gaps = 67/465 (14%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G +N A +F ++ ++N +I G QS DA L+ +M + ++FTF+ VL
Sbjct: 246 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 305
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC N GF VHGK V +I N F +A + V
Sbjct: 306 SACA-----NAGFFVHGKSV----------HGQIIRLQPN----------FVPEAALPVN 340
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
++L Y++ G++ +A+ +FD M ++D+VSWN +++GY G ++KA E+F +P ++
Sbjct: 341 --NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKN 398
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+SW M+SGYV G+++ AL++F +MR+ +P D T + AC +LG L+ G+++H
Sbjct: 399 DLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHA 458
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
L+ + GNAL+ MYAKCG++ A VFL M + D +W+ +I L HG
Sbjct: 459 HLVQCGFEASNSA-GNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGR 517
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
E++ +F +M + P I+F+ +L AC+HAG V+EG YF+ M+ ++ I P HY
Sbjct: 518 EALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARL 577
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+GD+E G A +L M
Sbjct: 578 IDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD 637
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G Y+LLSN Y++ G W +VRKLM D +KK+PGCS IE K
Sbjct: 638 GTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSK 682
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 164/360 (45%), Gaps = 65/360 (18%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAV-FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC- 126
DT ++N ++ A++ AV + + S++P+ ++F+ ++ A ++ C
Sbjct: 124 DTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCT 183
Query: 127 -VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H ++K G V N+LI + C D AS W
Sbjct: 184 QLHCSVLKSGAAAVLSVSNALIALYMKC-DTPEAS-------------WD---------- 219
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
AR + DEMP +D ++W M+ GY ++G++ A +F EV + V WNAMISGYV
Sbjct: 220 ----ARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 275
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV---A 302
GM A E+F M S D+ T S+L+ACA+ G GK VH ++ + A
Sbjct: 276 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEA 335
Query: 303 KVLHGNALIDMYAKCGSI-------------------------------ERAIEVFLGMR 331
+ NAL+ +Y+K G I ++A+EVF M
Sbjct: 336 ALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMP 395
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
++ +W ++ G G +E+++ +F +M+ V+P + T+ G + AC G ++ G++
Sbjct: 396 YKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQ 455
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 108/248 (43%), Gaps = 43/248 (17%)
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVP--KRDVVSWNAMISGYVLCGMNKQALEM 255
P R ++ A G + A F+ VP +RD V NAM+S + + A+ +
Sbjct: 88 PTRAPSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSV 147
Query: 256 FEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGK--KVHCTLLDMTSGVAKVLH-GNALI 311
F + G RPDD + +L++A + +L ++HC++L SG A VL NALI
Sbjct: 148 FHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVL--KSGAAAVLSVSNALI 205
Query: 312 DMYAKCGSIER---AIEVFLGMRDRDVSTWST---------------------------- 340
+Y KC + E A +V M D+D TW+T
Sbjct: 206 ALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVV 265
Query: 341 ---LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLM 396
+I G G ++ +FR M KV E TF VL AC++AG GK + +++
Sbjct: 266 WNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQII 325
Query: 397 RDEYNIEP 404
R + N P
Sbjct: 326 RLQPNFVP 333
>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 808
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 151/465 (32%), Positives = 236/465 (50%), Gaps = 67/465 (14%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G +N A +F ++ ++N +I G QS DA L+ +M + ++FTF+ VL
Sbjct: 248 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 307
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC N GF VHGK V +I N F +A + V
Sbjct: 308 SACA-----NAGFFVHGKSV----------HGQIIRLQPN----------FVPEAALPVN 342
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
++L Y++ G++ +A+ +FD M ++D+VSWN +++GY G ++KA E+F +P ++
Sbjct: 343 --NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKN 400
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+SW M+SGYV G+++ AL++F +MR+ +P D T + AC +LG L+ G+++H
Sbjct: 401 DLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHA 460
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
L+ + GNAL+ MYAKCG++ A VFL M + D +W+ +I L HG
Sbjct: 461 HLVQCGFEASNSA-GNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGR 519
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
E++ +F +M + P I+F+ +L AC+HAG V+EG YF+ M+ ++ I P HY
Sbjct: 520 EALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARL 579
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+GD+E G A +L M
Sbjct: 580 IDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD 639
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G Y+LLSN Y++ G W +VRKLM D +KK+PGCS IE K
Sbjct: 640 GTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSK 684
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 164/360 (45%), Gaps = 65/360 (18%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAV-FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC- 126
DT ++N ++ A++ AV + + S++P+ ++F+ ++ A ++ C
Sbjct: 126 DTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCT 185
Query: 127 -VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H ++K G V N+LI + C D AS W
Sbjct: 186 QLHCSVLKSGAAAVLSVSNALIALYMKC-DTPEAS-------------WD---------- 221
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
AR + DEMP +D ++W M+ GY ++G++ A +F EV + V WNAMISGYV
Sbjct: 222 ----ARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 277
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV---A 302
GM A E+F M S D+ T S+L+ACA+ G GK VH ++ + A
Sbjct: 278 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEA 337
Query: 303 KVLHGNALIDMYAKCGSI-------------------------------ERAIEVFLGMR 331
+ NAL+ +Y+K G I ++A+EVF M
Sbjct: 338 ALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMP 397
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
++ +W ++ G G +E+++ +F +M+ V+P + T+ G + AC G ++ G++
Sbjct: 398 YKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQ 457
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 117/265 (44%), Gaps = 43/265 (16%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP--KRDVVSWNA 238
Y +L+ +LF P V+ ++ +A G + A F+ VP +RD V NA
Sbjct: 73 YTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNA 132
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGK--KVHCTLL 295
M+S + + A+ +F + G RPDD + +L++A + +L ++HC++L
Sbjct: 133 MMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVL 192
Query: 296 DMTSGVAKVLH-GNALIDMYAKCGSIER---AIEVFLGMRDRDVSTWST----------- 340
SG A VL NALI +Y KC + E A +V M D+D TW+T
Sbjct: 193 --KSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDV 250
Query: 341 --------------------LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+I G G ++ +FR M KV E TF VL AC
Sbjct: 251 NAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSAC 310
Query: 381 SHAGKVEEGKK-YFKLMRDEYNIEP 404
++AG GK + +++R + N P
Sbjct: 311 ANAGFFVHGKSVHGQIIRLQPNFVP 335
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 206/381 (54%), Gaps = 40/381 (10%)
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E N + S+I + DL +A FD + D+V W+++ AGY G + ARSLFD+
Sbjct: 53 EKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNMMEARSLFDQ 112
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP RD++SWN ++ GYA G+ME +F+E+ +R+V SWN +I GY G + L F
Sbjct: 113 MPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSF 172
Query: 257 EEMRSVGER-PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
+ M G P+D T+ +L+ACA LG + GK+VH ++ V NALIDMY
Sbjct: 173 KRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYG 232
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
KCG+IE A+EVF G++ RD+ +W+T+I GLA HG E++ +F EM+ + P ++TFVG
Sbjct: 233 KCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFVG 292
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------- 410
VL AC H G VE+G YF M +++I P I H G
Sbjct: 293 VLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPVK 352
Query: 411 --------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
V+ V+ G LA K L+ + ++V+LSNIY G ++ +++
Sbjct: 353 ADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIYGDAGRFDDAARLK 412
Query: 457 KLMDDSDIKKQPGCSLIEADD 477
M D+ KK+ G S IE DD
Sbjct: 413 VAMRDTGFKKEAGISWIETDD 433
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 99/436 (22%), Positives = 176/436 (40%), Gaps = 92/436 (21%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAIN---------YAHKMFVK 64
KC+ +L Q+ T+ S + E++ V+ IN A + F
Sbjct: 23 KCST-ESLNQMFLFGTLCSMVSANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDL 81
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
E D ++NT++ G + N ++A L+ QM P + S+
Sbjct: 82 SPERDIVLWNTMVAGYIEMGNMMEARSLFDQM------PCRDVMSW-------------- 121
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
N+++ +AN GD+ +FD + +V +W+ L GYA+
Sbjct: 122 -------------------NTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQN 162
Query: 185 GELSMA----RSLFDEMPV-------------------------------------RDLV 203
G +S + + DE V D+
Sbjct: 163 GRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVN 222
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
N +I Y K G +E A E+F + +RD++SWN MI+G G +AL++F EM++ G
Sbjct: 223 VKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCG 282
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
PD VT + +L AC +G +E G ++ S ++ H ++D+ ++ G + +A
Sbjct: 283 ISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQA 342
Query: 324 IEVFLGMRDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
+E M + D W+TL+G + + +E+ +L+ R FV +
Sbjct: 343 VEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEPR-NPANFVMLSNIYGD 401
Query: 383 AGKVEEGKKYFKLMRD 398
AG+ ++ + MRD
Sbjct: 402 AGRFDDAARLKVAMRD 417
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 146/465 (31%), Positives = 241/465 (51%), Gaps = 71/465 (15%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVL 112
+++ A K+F ++ E D + T++ G A++ +A L+ +M ++PN T +
Sbjct: 193 SLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAV 252
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A ++ G +H + + G + + N+L+ CG +
Sbjct: 253 SAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVR--------------- 297
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
AR +FD M V+D+ SW M+ YAK G++E A +LF ++P+R+
Sbjct: 298 ----------------YAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRN 341
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VVSW+ MI+ Y ++A+ +F EM + G P D T++S+L+ACA LG L++G+ ++
Sbjct: 342 VVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYE 401
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ V GNALIDM+AKCG + A ++F M +R+V +W+T+I A HG +E
Sbjct: 402 NYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSE 461
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
E+I +F +++ + P +ITF+G+L +CSH+G V EG++YFK M Y IEP + HY
Sbjct: 462 EAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACM 521
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG+VE+G +L+ + +S
Sbjct: 522 IDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDS 581
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G YVL+S IYAS+ +W++V+ +R M D +KK PGCS IE + K
Sbjct: 582 GIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGK 626
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 111/437 (25%), Positives = 183/437 (41%), Gaps = 108/437 (24%)
Query: 3 TNR-----HRSSRLWKKCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAIN 56
TNR H L + C + R L Q+ AL+T+ G + A R L + P +
Sbjct: 28 TNRNLVVTHPLLSLLESCASFRRLLQLHALLTVTGLAAHRFPASRLLAFCALSTPPRLAH 87
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
A + P+ +M T++RG +++ P A+ L+ ++ + + + TF F +KA
Sbjct: 88 AAAILARASPGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAA 147
Query: 117 RLLYRNMGF------CVHGKIVKYGFEFNR-FVRNSLIYFHANCGDLNTASVLFDGDAKM 169
G +H +K GF V N+L++F+AN L+ A
Sbjct: 148 AAAESEHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAG--------- 198
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
+FDEMP RD+VSW ++ GYA+ G ++A LF +
Sbjct: 199 ----------------------KVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM- 235
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
V+ G G RP+ VT+++ ++A +G L G
Sbjct: 236 --------------VVVG---------------GMRPNAVTLVAAVSAIGQMGLLAFGIM 266
Query: 290 VHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
+H + + GVA+ ++ NAL+DM+ KCG + A EVF GM +DV +W++++ A
Sbjct: 267 LHKYVTE--GGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKC 324
Query: 349 G-------------------------------FAEESIAMFREMQRLKVRPTEITFVGVL 377
G EE++ +FREM V P + T V VL
Sbjct: 325 GDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVL 384
Query: 378 VACSHAGKVEEGKKYFK 394
AC+ G ++ G+ ++
Sbjct: 385 SACAQLGCLDLGRWIYE 401
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 14/187 (7%)
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G+ +HC L VL GNAL+ YA S++ A +VF M +RDV +W+TL+ G A
Sbjct: 161 GEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYA 220
Query: 347 FHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
G A+E+ +F M + +RP +T V + A G + F +M +Y E
Sbjct: 221 RAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLA-----FGIMLHKYVTEGG 275
Query: 406 IRH--------YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
+ + G R A + M + + + N YA G+ E++ K
Sbjct: 276 VARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFK 335
Query: 458 LMDDSDI 464
M ++
Sbjct: 336 DMPRRNV 342
>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
Length = 695
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 241/462 (52%), Gaps = 46/462 (9%)
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F + D+ YNT+I G A + A+ ++ +M+K +KP ++T VL ACT+LL
Sbjct: 111 IFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLD 170
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
G +HG+I+ N FV N+L +A CG+++ A LFD +VV W+ + +G
Sbjct: 171 LRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230
Query: 181 YARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW 236
Y + + LF EM V +L V+ + ++ Y + G +++A ++F E+ ++D V W
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCW 290
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
MI G G + AL +F EM RPD T+ S++++CA L L G+ VH
Sbjct: 291 TIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFL 350
Query: 297 MTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
M GV +L +AL+DMY KCG A +F M+ R+V +W+++IGG A +G E++
Sbjct: 351 M--GVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEAL 408
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
+++ M ++P +TFVGVL AC HAG VEEGK+YF M D++ +EP HY
Sbjct: 409 SLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNL 468
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
+ GD++ G +A + L+ + + Y
Sbjct: 469 FGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPY 528
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
++LSN+YA+RG W V +R LM +KK S IE D++
Sbjct: 529 IMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNE 570
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 130/219 (59%), Gaps = 1/219 (0%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+ GE+S AR LFDEM RD SWN M++ YAK G +E +F+ +P RD VS+N +I
Sbjct: 68 YAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVI 127
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
SG+ G AL +F M+ G +P + T +S+L AC L DL GK++H ++ G
Sbjct: 128 SGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLG 187
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
V NAL D+YA+CG I++A +F M R+V TW+ +I G + E+ I +F E
Sbjct: 188 -GNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHE 246
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
MQ ++P ++T VL A AG ++E +K F +R++
Sbjct: 247 MQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREK 285
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 145/307 (47%), Gaps = 22/307 (7%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
G+ + G I+ A K+F +I E D + +I G AQ+ DA+ L+++M + +P+ +
Sbjct: 264 GAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGY 323
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
T S V+ +C +L G VHGK G + V ++L+ + CG A +F
Sbjct: 324 TISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTM 383
Query: 167 AKMDVVAWSSLTAGYARRGE----LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222
+VV+W+S+ GYA G+ LS+ ++ +E D V++ +++ G +E+
Sbjct: 384 QTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGK 443
Query: 223 ELFNEV-------PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
E F + P D + M++ + G +A+++ M + P+ + ++L
Sbjct: 444 EYFCSMSDQHGLEPTPD--HYACMVNLFGRSGHMDKAVDLISSM---SQEPNSLIWTTVL 498
Query: 276 TACADLGDLEVGKKVHCTLLDMT--SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
+ C GD++ G+ L+++ + V ++ L +MYA G + + M+ +
Sbjct: 499 SVCVMKGDIKHGEMAARCLIELNPFNAVPYIM----LSNMYAARGRWKDVASIRSLMKSK 554
Query: 334 DVSTWST 340
V +S
Sbjct: 555 HVKKFSA 561
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 160/543 (29%), Positives = 261/543 (48%), Gaps = 89/543 (16%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSV----VIPGAINYAHKMFVKITEPDTFM 72
+L KQ+ + + G + D I GS+ V G I A ++F + +
Sbjct: 259 DLNKGKQLHSYLLKAGMSPD------YIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVL 312
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N ++ Q + + L+ QM ++PN+FT+ +L+ CT N+G +H +
Sbjct: 313 WNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSI 372
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K GFE + +V LI ++ G L+ A + + DVV+W+S+ AGY + A
Sbjct: 373 KTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALE 432
Query: 193 LFDEMPV---------------------------------------RDLVSWNVMITGYA 213
F +M + D+ WN ++ YA
Sbjct: 433 TFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYA 492
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
+ G ++A LF + +D ++WN M+SG+ G+ ++ALE+F +M G + + T +S
Sbjct: 493 RCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVS 552
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
++A A+L D++ GK++H T++ T ++ NALI +Y KCGSIE A F M +R
Sbjct: 553 SISASANLADIKQGKQIHATVIK-TGCTSETEVANALISLYGKCGSIEDAKMQFFEMSER 611
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
+ +W+T+I + HG+ E++ +F +M++ ++P ++TF+GVL ACSH G VEEG YF
Sbjct: 612 NHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYF 671
Query: 394 KLMRDEYNIEPNIRHYG---------------------------------------VHGD 414
K M E+ I P HY VH +
Sbjct: 672 KSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKN 731
Query: 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+E+G LA K LL + +S YVLLSN YA G+W + VRK+M D ++K+PG S IE
Sbjct: 732 IEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIE 791
Query: 475 ADD 477
+
Sbjct: 792 VKN 794
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 184/378 (48%), Gaps = 40/378 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+++ A ++F ++ D +NT+I AQ N A+ ++ +M P+ T + +L
Sbjct: 192 GSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLL 251
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + N G +H ++K G + + SL+ + CG + A +F + +VV
Sbjct: 252 AACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVV 311
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPV--------------------------------- 199
W+ + Y + +L+ + LF +M
Sbjct: 312 LWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLS 371
Query: 200 ------RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
D+ V+I Y+K G ++KA + + +DVVSW +MI+GYV K+AL
Sbjct: 372 IKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEAL 431
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
E F++M+ G PD++ + S ++ACA + + G+++H + + ++ A V NAL+++
Sbjct: 432 ETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIH-SRVYVSGYSADVSIWNALVNL 490
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YA+CG + A +F + +D TW+ ++ G A G EE++ +F +M + V+ TF
Sbjct: 491 YARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTF 550
Query: 374 VGVLVACSHAGKVEEGKK 391
V + A ++ +++GK+
Sbjct: 551 VSSISASANLADIKQGKQ 568
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 152/339 (44%), Gaps = 63/339 (18%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F +++ D + ++ G A++ +AV LY QM + P + S VL
Sbjct: 91 GLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVL 150
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
ACT+ G VH ++ K G V N+LI
Sbjct: 151 SACTKAALFEQGRLVHAQVYKQGSCSETVVGNALI------------------------- 185
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
A Y R G LS+A +F EMP D V++N +I+ +A+ G E
Sbjct: 186 ------ALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGE------------- 226
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
ALE+FEEMR G PD VT+ SLL ACA +GDL GK++H
Sbjct: 227 ------------------SALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHS 268
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
LL ++ G +L+D+Y KCG I A+E+F +V W+ ++
Sbjct: 269 YLLKAGMSPDYIIEG-SLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLA 327
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+S +F +M VRP E T+ +L C++AG++ G++
Sbjct: 328 KSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ 366
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 37/242 (15%)
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
D +A + L YA++G + AR +F+++ RD VSW M++GYA+
Sbjct: 76 DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARN-------------- 121
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
G+ ++A+ ++ +M G P + S+L+AC E G+
Sbjct: 122 -----------------GLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRL 164
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
VH + S V+ GNALI +Y + GS+ A VF M D T++TLI A G
Sbjct: 165 VHAQVYKQGSCSETVV-GNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCG 223
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL-----MRDEYNIEP 404
E ++ +F EM+ P +T +L AC+ G + +GK+ M +Y IE
Sbjct: 224 NGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEG 283
Query: 405 NI 406
++
Sbjct: 284 SL 285
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 160/490 (32%), Positives = 241/490 (49%), Gaps = 110/490 (22%)
Query: 48 SVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLD--AVFLYTQMEKCS-IKPN 104
+V + G++ YA +F +I P T +N++IRG +QS +PL A+ Y M S +P+
Sbjct: 441 AVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPD 500
Query: 105 KFTFSFVLKACTRLLYRNMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
+TFSF+LKAC + G C VHG I+++G++
Sbjct: 501 TYTFSFLLKACEEA--KEEGKCREVHGFIIRFGYD------------------------- 533
Query: 163 FDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222
DVV ++L YA G + A +F+EMP RDLVSWN MI+ Y +
Sbjct: 534 ------QDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQT------- 580
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
G++++AL+M+++MR D T++SLL++CA +G
Sbjct: 581 ------------------------GLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVG 616
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
L +G ++H V + GNALIDMYAKCGS+ A+ +F M RDV TW+++I
Sbjct: 617 ALHMGVQMH-RFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMI 675
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G HG +E+I F M VRP ITF+G+L CSH G V+EG +YF +M E+N+
Sbjct: 676 VGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNL 735
Query: 403 EPNIRHYG---------------------------------------VHGDVELGRLANK 423
+P I+HYG +H +VE+G +A +
Sbjct: 736 KPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMR 795
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQY 483
L+ + +GD VLLS IYA + V ++RKL+ IK PG S IE D+ ++
Sbjct: 796 NLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVH-RF 854
Query: 484 LFNLKPKPNS 493
+ + K P+S
Sbjct: 855 VVDDKSHPDS 864
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/399 (23%), Positives = 180/399 (45%), Gaps = 38/399 (9%)
Query: 2 RTNRHRSSRLWKKCTNLR---TLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAIN 56
R + + S L K C + +++ + G++ D LI Y+G+ G I
Sbjct: 498 RPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGN----GLIE 553
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
AHK+F ++ D +N++I Q+ +A+ +Y QM ++ + FT +L +C
Sbjct: 554 TAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCA 613
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
+ +MG +H + N FV N+LI +A CG L +A +F+ K DV W+S
Sbjct: 614 HVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNS 673
Query: 177 LTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVP--- 229
+ GY G A + F M + + +++ ++ G + QG +++ + F+ +
Sbjct: 674 MIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEF 733
Query: 230 --KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
K + + M+ + G K+ALE+ +RS + D V +LL +C ++E+G
Sbjct: 734 NLKPGIKHYGCMVDLFGRAGKLKEALEV---IRSSPSQHDPVLWRTLLGSCKIHRNVEIG 790
Query: 288 KKVHCTLLDMTS---GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST---WSTL 341
+ L+ + S G +L G +YA+ ++ + ++ R + T WS +
Sbjct: 791 EMAMRNLVQLGSLGAGDCVLLSG-----IYAEAKDLQGVARMRKLIQSRGIKTTPGWSWI 845
Query: 342 IGGLAFHGFA------EESIAMFREMQRLKVRPTEITFV 374
G H F +S ++R+++ + R + + +
Sbjct: 846 EVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYA 884
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 216/387 (55%), Gaps = 38/387 (9%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H K GF N+ I + + G + A +FDG + D V+++S+ GYA G+
Sbjct: 33 LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ A+ LF+ + V+W M+ G+ + G++E A +F E+P+RD+VSWNAMISG V
Sbjct: 93 VGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGN 152
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
+ +AL +F M G P+ T++S+L+AC G LE GK VH + + L
Sbjct: 153 RLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFL- 211
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ-RLK 365
G AL+DMYAKCG++E A+EVF G+R R+ TW+ +I GLA +G++ +++ MFR+M+
Sbjct: 212 GTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGT 271
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV---------- 415
V P E+TFVGVL+ACSHAG V+ GK++F + +Y +E + HY D+
Sbjct: 272 VAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEA 331
Query: 416 ------------------ELG--------RLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
LG ++A + M SGD+VLLSN+YA+ G W
Sbjct: 332 HKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEMEATCSGDHVLLSNLYAAVGRW 391
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEAD 476
N VE VR+ M I+K PGCS +E D
Sbjct: 392 NGVEDVRRTMRSKGIEKIPGCSSVEMD 418
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 139/348 (39%), Gaps = 67/348 (19%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F ++ E D +N +I G ++ P++A+ L+ M + PN+ T VL
Sbjct: 122 GDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVL 181
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
ACT G VH + K ++ F+ +L+ +A CG + A +F G +
Sbjct: 182 SACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTC 241
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVS---------------------------- 204
W+++ G A G + A +F +M + V+
Sbjct: 242 TWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYT 301
Query: 205 -------------WNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNK 250
+ M+ A+ G +++A++L E+P K DVV W A++ G L K
Sbjct: 302 IPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVK 361
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE----------VGKKVHCTLLDMTSG 300
A + EM + D V + +L A +E + K C+ ++M
Sbjct: 362 MAENVISEMEATCS-GDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGS 420
Query: 301 VAKVLHGN----ALIDMYAKC----------GSIERAIEVFLGMRDRD 334
+ + + G+ + D++AK G + EVF + D +
Sbjct: 421 IHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEE 468
>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
Length = 664
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 156/476 (32%), Positives = 241/476 (50%), Gaps = 80/476 (16%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN----KFTFSF 110
+ YA +F ++ PD F+ ++R + +Q PL+ L++++ +C+ + F FS
Sbjct: 104 LRYAVAVFSSLSPPDPFLAAALLRFAHLTQPPLETFRLFSRL-RCAHGSDLPFLPFAFSP 162
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYG-FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
+ K+ + H + G F+ +RFV NSLI + CGD+ A
Sbjct: 163 LAKSAAAARSLHAAASAHAVSLLLGGFDKHRFVENSLISAYVACGDVGAA---------- 212
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
R +FDEM V+D++SW ++ Y++ +M A E+F P
Sbjct: 213 ---------------------RKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCP 251
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
+D+V+W AM++GY M +ALE FE+M G D+V++ ++ACA LG V +
Sbjct: 252 VKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLG--AVKRA 309
Query: 290 VHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
+ +G+ + V+ G+ L+DMYAKCG I+ A +VF GM D++V T+S++I GLA H
Sbjct: 310 AWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASH 369
Query: 349 GFAEESIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
G A + IA+F +M +R V P +TF+GVL ACSHAG V+EG+ YF M+D Y I P+
Sbjct: 370 GRANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSAD 429
Query: 408 HYG---------------------------------------VHGDVELGRLANKRLLNM 428
HY +HG+ E+ ++A + L +
Sbjct: 430 HYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRL 489
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYL 484
+ G+YVLLSN AS GEW+ V K+RKLM +KK P S E D Q+
Sbjct: 490 EPEGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFF 545
>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
Length = 787
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 162/507 (31%), Positives = 256/507 (50%), Gaps = 91/507 (17%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC--SIKPNKFTFSFVL 112
+++A K+F + PDT ++NT++ G + S+ AV + +M C S++P+ T + VL
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLSGSE----AVESFARM-VCDGSVRPDATTLASVL 219
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A + MG CVH K G + V LI ++ CGD+ +A LFD K D+V
Sbjct: 220 PAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLV 279
Query: 173 AWSSLTAGYARRGELSMARSLFDEM----------------PVR-----DLVSW------ 205
A+++L +GY+ G + + +LF E+ PV DL++
Sbjct: 280 AYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFV 339
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
+ T + + +ME A + F+ +P++ + SWNAMISGY G+ + A+
Sbjct: 340 LKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAV 399
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH--CTLLDMTSGVAKVLHGNALI 311
+FE+M + RP+ +T+ S L+ACA LG L +GK +H T D+ V + ALI
Sbjct: 400 ALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVM---TALI 456
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DMYAKCGSI A +F M +++V +W+ +I G HG E++ ++++M + PT
Sbjct: 457 DMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSA 516
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH----------------------- 408
TF+ VL ACSH G VEEG K F+ M D+Y I P I H
Sbjct: 517 TFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISE 576
Query: 409 ----------YG-------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+G VH D +L +LA+++L + + SG YVLLSN++ S+ +++
Sbjct: 577 FPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSE 636
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEADDK 478
VR+ + K PG +LIE +K
Sbjct: 637 AAVVRQEAKSRKLVKTPGYTLIEIGNK 663
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 152/337 (45%), Gaps = 41/337 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F + +PD YN +I G + + +V L+T++ + PN T ++
Sbjct: 261 GDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALI 320
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+ + + C+HG ++K GF N V ++ H D+ +A FD + +
Sbjct: 321 PVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTME 380
Query: 173 AWSSLTAGYARRGELSMARSLFDEM--------PVR--------------DLVSW----- 205
+W+++ +GYA+ G MA +LF++M P+ L W
Sbjct: 381 SWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRII 440
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
+I YAK G + +A +FN + ++VVSWNAMI+GY L G +AL
Sbjct: 441 TEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEAL 500
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
+++++M P T LS+L AC+ G +E G KV ++ D + + H ++D+
Sbjct: 501 KLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDL 560
Query: 314 YAKCGSIERAIEVFLGMRDRDV--STWSTLIGGLAFH 348
+ G ++ A E+ V W L+G H
Sbjct: 561 LGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVH 597
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 162/550 (29%), Positives = 280/550 (50%), Gaps = 101/550 (18%)
Query: 21 LKQIQALVTING-FNSDSSALRELIYS-GSV--VIPGAINYAHKMFVKITEPDTFMYNTI 76
+ QI AL+ G F +D++++ +LI S G + +IP A +F K+ + +N++
Sbjct: 1 MTQIHALILTTGLFFNDANSIAQLIASYGRINNIIP-----ARNVFEKMPQRSINAWNSM 55
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
I +++ P + + LY +M IKP+ TF+ LKAC+ L+ +MG + + V +G+
Sbjct: 56 IIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGY 115
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE----LSMARS 192
F+ FV +S++ +A G ++ A ++FD K DVV+W+++ G+A+ G + + R+
Sbjct: 116 GFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRT 175
Query: 193 LFDE-------------------------------MPVRDLVSWNVMITG----YAKQGE 217
+ E M R++ NV+ T YAK G+
Sbjct: 176 MQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGK 235
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
+E A+ +F +P + V+SW A+ISG+ G + L EM++ G +PD V+++S L+A
Sbjct: 236 LELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSA 295
Query: 278 CADLGDLEVGKKVHCTL-----LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
CA +G+L+VGK +H + LD SG ALIDMYAKCG++ A +F +
Sbjct: 296 CAQVGNLKVGKSLHGHIVKRLYLDKVSG-------TALIDMYAKCGALTFARALFDQIEP 348
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
RD+ W+ +I HG E++++F +M+ + P TF +L ACSH+G VEEG+ +
Sbjct: 349 RDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYW 408
Query: 393 FKLMRDEYNIEPNIRHYGV---------------------------------------HG 413
F ++ D+ I+P+ +HY H
Sbjct: 409 FHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHK 468
Query: 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
++ +G + K++L D+ G YVL+SN ++ +W+ RK+M ++ ++K PG S +
Sbjct: 469 NLLIGEMVAKKILESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAV 528
Query: 474 E--ADDKAFL 481
E D +AFL
Sbjct: 529 EVNGDLQAFL 538
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/415 (26%), Positives = 189/415 (45%), Gaps = 49/415 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F K+ + D + T+I G AQS PLDA+ +Y M+K + + ++
Sbjct: 133 GKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLI 192
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+ACT L G VHG +V+ + ++ SLI +A G L AS +F+G V+
Sbjct: 193 QACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVI 252
Query: 173 AWSSLTAGYARRG-----------------------------------ELSMARSLFDEM 197
+W +L +G+A+ G L + +SL +
Sbjct: 253 SWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHI 312
Query: 198 PVR---DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
R D VS +I YAK G + A LF+++ RD++ WNAMIS Y + G +AL
Sbjct: 313 VKRLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALS 372
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314
+F +M+ PD T SLL+AC+ G +E G+ L+D + H ++D+
Sbjct: 373 LFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLL 432
Query: 315 AKCGSIERAIEVFLGMRDRD-VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
++ G +E A ++ M + ++ W L+ G H + EM K+ +
Sbjct: 433 SRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNH-----KNLLIGEMVAKKILESNPDD 487
Query: 374 VGVLVACSH----AGKVEEGKKYFKLMRDE-YNIEPNIRHYGVHGDVELGRLANK 423
+G+ V S+ A K ++ + K+M++ P V+GD++ + +K
Sbjct: 488 LGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGDLQAFLMEDK 542
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 248/473 (52%), Gaps = 54/473 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL--DAVFLYTQMEKCSIKPNKFTFSF 110
G ++ A K+F KI P+T + I+ A ++ +A+ +++M+K ++PN+F
Sbjct: 852 GQLSNARKLFDKI--PNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPS 909
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
+LKAC L R G +H I+K FE + ++ ++LIY ++ CG + A +FD D
Sbjct: 910 ILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKD 969
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFN 226
+V +++ +GYA+ G + A L +M ++VSWN +I G+++ G+ +E+F
Sbjct: 970 LVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFR 1029
Query: 227 EVP----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ + DVVSW ++ISG+V N + + F+EM G P VT+ SLL AC ++
Sbjct: 1030 LMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVA 1089
Query: 283 DLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
+L GK++H M GV K V +AL+DMYAKCG I A +F M +R+ TW++L
Sbjct: 1090 NLRHGKEIHG--YAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSL 1147
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I G A HG+ E+I +F +M+ + +TF VL ACSHAG VE G+ F M+++Y
Sbjct: 1148 IFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYR 1207
Query: 402 IEPNIRHYGV---------------------------------------HGDVELGRLAN 422
IEP + HY HG++EL +A
Sbjct: 1208 IEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAA 1267
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
+ L + + G +LLSN+YA G W K++K+M K PGCS IEA
Sbjct: 1268 EHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIEA 1320
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 133/508 (26%), Positives = 241/508 (47%), Gaps = 82/508 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +++ K+T D N +I A++ + A ++ Q+ +PN +T+S +L
Sbjct: 162 GEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTML 221
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C + G +H +VK + V N+L+ ++ CG + A ++F+ + +++
Sbjct: 222 AVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNII 281
Query: 173 AWSSLTAGYARRGELSMARSLFDEM--------------------PVRDLVSW------- 205
+W++ G+ + G+ A F M V+D +
Sbjct: 282 SWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQV 341
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDV-VSWNAMISGYVLCGMNKQA 252
+I Y+ GEM++A + F ++ + VSWNA+I+GYVL ++A
Sbjct: 342 IKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKA 401
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALI 311
+E F M ++ T ++ AC+ L ++H L+ S V LH ++LI
Sbjct: 402 MEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIK--SNVESNLHVASSLI 459
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
+ Y +CGS+E A++VF + D DV +W+++I + +G ++I + R+M +PT
Sbjct: 460 EAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSX 519
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV--ELGRLAN------- 422
TF+ VL ACSH+G V+EG+++FK M +Y+I+P H D+ G+L N
Sbjct: 520 TFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKK 579
Query: 423 ------------------------------KRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+++L++ +++ YV LSN+YA G W
Sbjct: 580 LTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADA 639
Query: 453 EKVRKLMDDSDIKKQPGCSLIEADDKAF 480
E R+LM+ +I K+PGCS IE ++K +
Sbjct: 640 ENQRRLMEQKEISKEPGCSWIEVNNKMY 667
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 182/408 (44%), Gaps = 56/408 (13%)
Query: 105 KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD 164
++ FS L C R +G H +VK G + FV SLI +A CG++++A ++D
Sbjct: 114 QYVFS-ALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYD 172
Query: 165 GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-------------------------- 198
+D + L + YAR G A +F ++
Sbjct: 173 KMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQE 232
Query: 199 -------------VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
+ + N ++T Y+K G ME+A +F + +R+++SW A I+G+
Sbjct: 233 GKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQ 292
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD--MTSGVAK 303
G K+AL+ F MR G P++ T +L +C + D G+ H ++ M SG
Sbjct: 293 HGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASG--- 349
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGM-RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
V G A+IDMY+ G ++ A + F M R +W+ LI G + E+++ F M
Sbjct: 350 VFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMV 409
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIEPNIRHYG--VHGDVELGR 419
+ V E T+ + ACS + + + +L++ N+E N+ + + G
Sbjct: 410 KEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKS--NVESNLHVASSLIEAYTQCGS 467
Query: 420 LANKRLLNMRKDESGDYVLLSNI---YASRGE-WNRVEKVRKLMDDSD 463
L N + + ++ D V ++I Y+ G+ W + +RK++++ +
Sbjct: 468 LENAVQVFTQISDA-DVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGN 514
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 6/230 (2%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNEVPKRDVVSW 236
YAR L R+L + + L +++ Y + G++ A +LF+++P ++ W
Sbjct: 813 YARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRW 872
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
+ G ++AL F EM+ G RP+ + S+L AC L D G+ +H +L
Sbjct: 873 IVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILK 932
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
S + +ALI MY+KCG +E+A VF + D+D+ + ++ G A HGF E++
Sbjct: 933 -NSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALB 991
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
+ ++MQ+ V+P +++ ++ S G + F+LM +EP++
Sbjct: 992 LVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTAN-GVEPDV 1040
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 167/368 (45%), Gaps = 24/368 (6%)
Query: 2 RTNRHRSSRLWKKCTNL---RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYA 58
R N+ + K C +L RT + + ++ N F SD+ + LIY S G + A
Sbjct: 901 RPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKC--GHVEKA 958
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
++F I + D + N ++ G AQ +A+ L +M++ +KPN +++ ++ +++
Sbjct: 959 CRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQV 1018
Query: 119 LYRNM---------GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
++M V +V + + FV+N FH + G + + D
Sbjct: 1019 GDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQN----FHNHEG-FDAFKEMLDQGFCP 1073
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPV----RDLVSWNVMITGYAKQGEMEKANELF 225
V SSL L + + V +D+ + ++ YAK G + +A LF
Sbjct: 1074 SSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILF 1133
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+P+R+ V+WN++I GY G +A+E+F +M + D +T ++L AC+ G +E
Sbjct: 1134 YMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVE 1193
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGG 344
+G+ + + + ++ H ++D+ + G + A ++ M + D W L+G
Sbjct: 1194 LGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGA 1253
Query: 345 LAFHGFAE 352
HG E
Sbjct: 1254 CRNHGNIE 1261
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G P + S L+ C G +E+G++ HC ++ + G + + +LIDMYAKCG ++
Sbjct: 108 GGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFV-CTSLIDMYAKCGEVDS 166
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A+ V+ M D +T + LI A +GF ++ +F ++ + RP T+ +L C
Sbjct: 167 AVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGT 226
Query: 383 AGKVEEGKK 391
++EGK+
Sbjct: 227 ISAIQEGKQ 235
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 197/358 (55%), Gaps = 43/358 (12%)
Query: 160 SVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV-RDLVSWNVMITGYAKQGEM 218
S+L D A +SL Y G ++ AR +FDE D+VSWNVMI GY K G++
Sbjct: 95 SLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSGDL 154
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+A ELF+ +P R+VVSW +I Y ++A+E+F M+ G PD V +LS+L+AC
Sbjct: 155 ARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSAC 214
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
DLG +++G+ VH +L G+ + + NA+IDMY KCGS+++A+EVF GM + + T
Sbjct: 215 GDLGVVDLGEWVHRFVL--RRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVT 272
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+T+I G A HG E++ +FR M++ V P +ITF+ VL CSH G + G+ YFK M
Sbjct: 273 WTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMV 332
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
+Y I+P + HYG HGD ELG
Sbjct: 333 SQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELG 392
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
A L+ + SG+Y+LLSNIYA + W+ V ++R M D ++ PG S I+ D
Sbjct: 393 EQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDVD 450
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 133/294 (45%), Gaps = 22/294 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F + + + +I AQ + P +A+ ++ +M+ I+P+ VL
Sbjct: 152 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 211
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L ++G VH +++ G + N++I + CG + A +F+G + +V
Sbjct: 212 SACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIV 271
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV 228
W+++ AG+A G S A LF M ++ +++ +++ + G + F +
Sbjct: 272 TWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTM 331
Query: 229 P-----KRDVVSWNAMIS--GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
K V + MI G C M + L ++ + + + +LL A
Sbjct: 332 VSQYKIKPRVEHYGCMIDLLGRAGCLMEARGL-----IQDMPFKANAAIWGALLAAARTH 386
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALI--DMYAKCGSIERAIEVFLGMRDR 333
GD E+G++ L+++ + GN ++ ++YA+ + E+ + MRDR
Sbjct: 387 GDTELGEQALLHLIELEPHNS----GNYILLSNIYAEQERWDAVRELRISMRDR 436
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 154/482 (31%), Positives = 236/482 (48%), Gaps = 81/482 (16%)
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+NT +R A+ L A+ LY QM + +PN FTF F LK+C L +G HG+I
Sbjct: 8 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD--AKMDVVAWSSLTAGYARRGELSMA 190
K G F FV+ LI + ++ A +F+ + ++ V +++L +GY + S A
Sbjct: 68 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127
Query: 191 RSLFDEM-----PVR----------------------------------DLVSWNVMITG 211
LF +M PV D+ N IT
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 187
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
Y K G + A +LF+E+P + ++SWNAM+SGY G+ LE++ M G PD VT+
Sbjct: 188 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 247
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
+ +L++CA+LG VG +V + + + NALI+MYA+CG++ +A VF GM
Sbjct: 248 VGVLSSCANLGAQSVGHEVEFKM-QASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP 306
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+R + +W+ +IGG HG E ++ +F+EM R + P FV VL ACSHAG ++G +
Sbjct: 307 ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE 366
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
YFK+M+ Y +EP HY +H
Sbjct: 367 YFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIH 426
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
+VEL LA +R++ + + G YVLLSNIY++ V ++R +M + +KK PGCS
Sbjct: 427 KNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSY 486
Query: 473 IE 474
+E
Sbjct: 487 VE 488
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 150/352 (42%), Gaps = 50/352 (14%)
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
T YN ++ G + DAV L+ QM + + N T ++ AC + +G +H
Sbjct: 108 TVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHC 167
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG---- 185
+KYGF+ + V N I + CG +N A LFD +++W+++ +GYA+ G
Sbjct: 168 STLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATN 227
Query: 186 ---------------------------------------ELSMARSLFDEMPVRDLVSWN 206
E M S F P + N
Sbjct: 228 VLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLN----N 283
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
+I YA+ G + KA +F+ +P+R +VSW A+I GY + G + A+++F+EM G P
Sbjct: 284 ALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEP 343
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D + +L+AC+ G + G + + H + ++D+ + G ++ A +
Sbjct: 344 DGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTL 403
Query: 327 FLGMRDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
M + D + W L+G H E + F + +++ P I + +L
Sbjct: 404 IESMPIKPDGAVWGALLGACKIHKNVELAELAFERV--IELEPENIGYYVLL 453
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 128/267 (47%), Gaps = 16/267 (5%)
Query: 32 GFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF 91
GF+SD S + I + G++NYA K+F ++ +N ++ G AQ+ + +
Sbjct: 173 GFDSDVSVVNCFITM--YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLE 230
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151
LY M+ + P+ T VL +C L +++G V K+ GF N F+ N+LI +A
Sbjct: 231 LYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYA 290
Query: 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR-----DLVSWN 206
CG+L A +FDG + +V+W+++ GY G +A LF EM +R D ++
Sbjct: 291 RCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM-IRSGIEPDGTAFV 349
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRS 261
+++ + G ++ E F + + + ++ M+ G K+A + E M
Sbjct: 350 CVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPI 409
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGK 288
+PD +LL AC ++E+ +
Sbjct: 410 ---KPDGAVWGALLGACKIHKNVELAE 433
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 167/538 (31%), Positives = 263/538 (48%), Gaps = 86/538 (15%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
+L+ ++I L+ NGF S+ + + +Y+ I+ A+KMF ++ D +
Sbjct: 160 DLKKGREIHGLIITNGFESNLFVMTAVMSLYAKC----RQIDNAYKMFERMQHKDLVSWT 215
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
T++ G AQ+ + A+ L QM++ KP+ T +L A + +G +HG +
Sbjct: 216 TLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRS 275
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
GFE V N+L+ + CG A ++F G VV+W+++ G A+ GE A + F
Sbjct: 276 GFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATF 335
Query: 195 ------DEMPVR---------------------------------DLVSWNVMITGYAKQ 215
E+P R ++ N +I+ Y+K
Sbjct: 336 LKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKC 395
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
++ A +FN + K + V+WNAMI GY G K+AL +F M+S G + D T++ ++
Sbjct: 396 KRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVI 454
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
TA AD K +H L V AL+DMYAKCG+I+ A ++F M++R V
Sbjct: 455 TALADFSVNRQAKWIH-GLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHV 513
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
TW+ +I G HG +E++ +F EMQ+ V+P +ITF+ V+ ACSH+G VEEG FK
Sbjct: 514 ITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKS 573
Query: 396 MRDEYNIEPNIRHYG---------------------------------------VHGDVE 416
M+++Y +EP + HY +H +VE
Sbjct: 574 MQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVE 633
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
LG A ++L + DE G +VLL+NIYAS W++V KVR M+D + K PGCS +E
Sbjct: 634 LGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVE 691
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 129/487 (26%), Positives = 217/487 (44%), Gaps = 80/487 (16%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
++RH S L + CT+ + L QI + NGF ++ ++I G+ + A ++F
Sbjct: 45 SHRHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVI--SLFCKFGSNSEAARVF 102
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
+ +Y+ +++G A++ + DA+ + +M ++ ++ +L+ C L
Sbjct: 103 EHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLK 162
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
G +HG I+ GFE N FV +++ +A C ++ A +F+ D+V+W++L AGYA
Sbjct: 163 KGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYA 222
Query: 183 RRGELSMARSLFDEM-----------------PVRDLVSW-------------------- 205
+ G A L +M V D+ +
Sbjct: 223 QNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVN 282
Query: 206 --NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
N ++ Y K G A +F + + VVSWN MI G G +++A F +M G
Sbjct: 283 VTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEG 342
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
E P VTM+ +L ACA+LGDLE G VH LLD + V N+LI MY+KC ++ A
Sbjct: 343 EVPTRVTMMGVLLACANLGDLERGWFVH-KLLDKLKLDSNVSVMNSLISMYSKCKRVDIA 401
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC--- 380
+F + +V TW+ +I G A +G +E++ +F MQ ++ T VGV+ A
Sbjct: 402 ASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADF 460
Query: 381 --------------------------------SHAGKVEEGKKYFKLMRDEYNIEPN--I 406
+ G ++ +K F +M++ + I N I
Sbjct: 461 SVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMI 520
Query: 407 RHYGVHG 413
YG HG
Sbjct: 521 DGYGTHG 527
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/523 (29%), Positives = 258/523 (49%), Gaps = 93/523 (17%)
Query: 61 MFVK-ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
MF K + + + +N+II A+S + L A++ ++ M K S+ PN+ TF +K+C+ L
Sbjct: 41 MFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLY 100
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
G +H + +G+ + FV ++LI ++ CG LN A LFD + +VV+W+S+ +
Sbjct: 101 DLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMIS 160
Query: 180 GYARRGELSMARSLFDEMPVRD-------------------------------------- 201
GY + A LF E + D
Sbjct: 161 GYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECV 220
Query: 202 ------------LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
L N ++ YAK GE+ + ++F+ + + DV SWN++I+ Y G++
Sbjct: 221 HGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLS 280
Query: 250 KQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
+A +F +M GE R + VT+ ++L ACA G L++GK +H ++ M V+ G
Sbjct: 281 VEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVV-GT 339
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+++DMY KCG +E A + F ++ ++V +W+ ++ G HG +E++ +F EM R ++P
Sbjct: 340 SIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKP 399
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
ITFV VL ACSHAG ++EG +F M+ E+++EP I HY
Sbjct: 400 NYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGL 459
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+H +VELG ++ ++L + G YVLLSNIYA G W
Sbjct: 460 IQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRW 519
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPN 492
+ VE++R LM + + K PG S++E + + +L K P
Sbjct: 520 DDVERMRILMKNHGLLKTPGYSIVEHKGRVHV-FLVGDKEHPQ 561
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 121/247 (48%), Gaps = 15/247 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
G I+ + K+F + E D +N++I AQ+ ++A L++ M ++ ++ N T S V
Sbjct: 247 GEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAV 306
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L AC +G C+H ++VK E N V S++ + CG + A FD + +V
Sbjct: 307 LLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNV 366
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVR-----DLVSWNVMITGYAKQGEMEKANELFN 226
+W+ + AGY G A +F EM +R + +++ ++ + G +++ FN
Sbjct: 367 KSWTVMVAGYGMHGHGKEAMKVFYEM-IRCGIKPNYITFVSVLAACSHAGLLKEGWHWFN 425
Query: 227 EVP-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
++ + + ++ M+ G K+A + +EM+ +PD + SLL AC
Sbjct: 426 KMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKV---KPDFIVWGSLLGACRIH 482
Query: 282 GDLEVGK 288
++E+G+
Sbjct: 483 KNVELGE 489
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 147/469 (31%), Positives = 246/469 (52%), Gaps = 75/469 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAV-FLYTQMEKCSIKPNKFTFSFV 111
G ++ A F ++E D +N++I G Q +A+ F + ++ S+KP++F+ +
Sbjct: 187 GRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASA 246
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L AC L + G +HG IV+ F+ + V N+LI
Sbjct: 247 LSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISM---------------------- 284
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDL--VSWNVMITGYAKQGEMEKANELFNEVP 229
YA+ G + +AR + ++ + DL +++ ++ GY K G++ A ++FN +
Sbjct: 285 ---------YAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLK 335
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
DVV+W AMI GYV G+N A+E+F+ M S G RP+ T+ ++L+A + + L GK+
Sbjct: 336 DPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQ 395
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFH 348
+H + + ++ + GNAL MYAK GSI A +VF +R +RD +W+++I LA H
Sbjct: 396 IHASAIRSGEALSPSV-GNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH 454
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH 408
G EE+I +F +M L ++P IT+VGVL AC+H G VE+G+ YF LM++ + I+P + H
Sbjct: 455 GLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSH 514
Query: 409 YG---------------------------------------VHGDVELGRLANKRLLNMR 429
Y V+ +V+L ++A +RLL +
Sbjct: 515 YACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIE 574
Query: 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ SG Y L+N+Y+S G+W+ K+RKLM +KK+ G S ++ +K
Sbjct: 575 PNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNK 623
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 171/392 (43%), Gaps = 73/392 (18%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + AH++F I D+ + TII G Q DA+ ++ M K + P +FT + VL
Sbjct: 55 GKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVL 114
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+C R +G VH +VK G V NSL+ +A GDL A V+FD +
Sbjct: 115 ASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTS 174
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+W+++ + + G + +A + F+ + RD+VSWN MI G + G +A + F+ +
Sbjct: 175 SWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSI---- 230
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
++ +PD ++ S L+ACA+L L GK++H
Sbjct: 231 --------------------------LKDTSLKPDRFSLASALSACANLEKLSFGKQIHG 264
Query: 293 ----TLLDMTSGVAKVLHGNALIDMYAKCGSIE---RAIE-------------------- 325
T+ D + V GNALI MYAK G +E R IE
Sbjct: 265 YIVRTMFDASGAV-----GNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYV 319
Query: 326 ----------VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
+F ++D DV W+ +I G +G ++I +F+ M RP T
Sbjct: 320 KLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAA 379
Query: 376 VLVACSHAGKVEEGKK-YFKLMRDEYNIEPNI 406
+L A S + GK+ + +R + P++
Sbjct: 380 MLSASSSVTSLNHGKQIHASAIRSGEALSPSV 411
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 169/362 (46%), Gaps = 50/362 (13%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+ G A LF+EMPV+ SWN +++GYAKQG++EKA+++F+ +P RD VSW +I
Sbjct: 20 YAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTII 79
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC-------- 292
GY G + A+++F +M P T+ ++L +CA G +GKKVH
Sbjct: 80 VGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLH 139
Query: 293 -------TLLDMTS-----GVAKVLHG----------NALIDMYAKCGSIERAIEVFLGM 330
+LL+M + +AKV+ NA+I ++ CG ++ A+ F +
Sbjct: 140 ACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELL 199
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFRE-MQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+RD+ +W+++I G HGF E++ F ++ ++P + L AC++ K+ G
Sbjct: 200 SERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFG 259
Query: 390 KK----YFKLMRDEYNIEPN--IRHYGVHGDVELGRLANKRLLNMRKDESGD---YVLLS 440
K+ + M D N I Y G VE+ R R++ D + L
Sbjct: 260 KQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIAR----RIIEQSGISDLDVIAFTALL 315
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL------IEADDKAFLQYLFNLKPKPNSG 494
N Y G+ ++ + D D+ + + D + + + P+PNS
Sbjct: 316 NGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSF 375
Query: 495 NL 496
L
Sbjct: 376 TL 377
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 159/512 (31%), Positives = 258/512 (50%), Gaps = 77/512 (15%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
+R L K + L +KQI + ++G S + L + + + G++ +A K+F
Sbjct: 131 DRQTFLHLMKASSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMEL-GSLGFAEKVFA 189
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
+ +PD +N +I G A+ L+A+ LY +M I+P+++T +L C L +
Sbjct: 190 IMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRL 249
Query: 124 GFCVHGKIVKYG--FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
G VHG I + G + N +RN+L+ + C + +G
Sbjct: 250 GKGVHGWIERRGPVYSSNLILRNALLDMYFKCKE-----------------------SGL 286
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
A+R FD + +D+ SWN M+ G+ + G+ME A +F+++P+RD+VSWN+++
Sbjct: 287 AKRA--------FDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLF 338
Query: 242 GYVLCGMNKQAL-EMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
Y G +++A+ E+F EM V + +PD VTM+SL++ A+ G+L G+ VH ++ +
Sbjct: 339 CYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLMIRLQL 398
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
L +ALIDMY KCG IERA VF ++DV W+++I G AFHG+ ++++ +F+
Sbjct: 399 EGDAFL-SSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQQALQLFK 457
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------- 411
MQ V P ++T + VL ACSH+G VEEG F M++++ P HYG
Sbjct: 458 RMQEEDVTPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGFHPETEHYGSLVDLLCRA 517
Query: 412 --------------------------------HGDVELGRLANKRLLNMRKDESGDYVLL 439
D+E LA LL + ++ G YVLL
Sbjct: 518 GRLEEAKDIVQNKMPMRPSQSMWGSILSACREGEDIETAELALSELLKLEPEKEGGYVLL 577
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
SNIYA+ G W +K R+ M+ +KK G S
Sbjct: 578 SNIYATVGRWGYSDKTREAMESRGVKKTAGYS 609
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/498 (31%), Positives = 247/498 (49%), Gaps = 85/498 (17%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTI 76
++ A GF D+ Y+GS ++ G ++ A K+F ++ ++N +
Sbjct: 69 RKAHAAAIKTGFRWDA-------YTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMM 121
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
+R + AV L QME+ + P++ T + AC+R ++G +H + F
Sbjct: 122 VRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-F 180
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
FN V N+L+ D+ Y + L A LF++
Sbjct: 181 GFNLPVANALL-------DM------------------------YTKNDCLEEAVKLFEQ 209
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP R+++SW ++++GY G+++KA LFN+ ++D++ W AMI+ V G ++AL +F
Sbjct: 210 MPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLF 269
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
+M+ PD T+++LLT CA+LG L+ G+ +H + VL G ALIDMY+K
Sbjct: 270 RDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVL-GTALIDMYSK 328
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CG IE+++EVF M+ RD + W+ +I GLA +G A ++ +F++MQR KV+P +TF+GV
Sbjct: 329 CGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGV 388
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------- 410
L AC H G V+EG+K F MR+ Y IEP + HY
Sbjct: 389 LSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPINK 448
Query: 411 --------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
HG+VE+ KR+ + +L+SN+YA+ W V +VR
Sbjct: 449 DAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVYATASRWEDVIRVR 508
Query: 457 KLMDDSDIKKQPGCSLIE 474
M +KK GCSLIE
Sbjct: 509 GKMAHPTVKKTAGCSLIE 526
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/472 (32%), Positives = 248/472 (52%), Gaps = 54/472 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A ++F ++ + +N +I Q+ + +A+ L+ +M + N +++ V+
Sbjct: 247 GKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPE----KNSISWTTVI 302
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEF-NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
Y MG + + + N + ++I + ++ A +F+ + DV
Sbjct: 303 NG-----YVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDV 357
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
V W+++ AGY++ G + A LF +M +D+VSWN M+ YA+ G+M+ A ++F E+ ++
Sbjct: 358 VCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEK 417
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
++VSWN++ISG G AL+ F M G++PD T L++CA L L+VGK++H
Sbjct: 418 NIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLH 477
Query: 292 CTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
L M SG A L NALI MYAKCGSI A +F + DV +W++LI A +G
Sbjct: 478 --QLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGN 535
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
E++ +F +M+ V P E+TFVG+L ACSH G +++G K FK M YNIEP HY
Sbjct: 536 GREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYA 595
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
+HG++EL + A ++LL
Sbjct: 596 CMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPH 655
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK--AFL 481
++ +YVLLSN+ A G W+ V +VR+LM + +KQPG S IE ++ AFL
Sbjct: 656 KTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFL 707
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 132/291 (45%), Gaps = 64/291 (21%)
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
K+ ++ N NS+I A G ++ A LFDG + ++V+W+S+ A Y +
Sbjct: 36 KVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEE 95
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN----------------------- 226
AR LFD+MP RDL SW +MIT Y + GE+ KA LFN
Sbjct: 96 ARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQ 155
Query: 227 ---------EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR---------------SV 262
+P +D+VSWN+M++GY G + L+ FEEM V
Sbjct: 156 FDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEV 215
Query: 263 GE------------RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
G+ P+ V+ +++L A G + ++ L D + V+ NA+
Sbjct: 216 GDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARR----LFDQMP-IRNVVAWNAM 270
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
I Y + ++ AI +F+ M +++ +W+T+I G G +E+ + +M
Sbjct: 271 IAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQM 321
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 109/487 (22%), Positives = 206/487 (42%), Gaps = 117/487 (24%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I+ A K+F +T +T +N++I A++ DA L+ M + +I + L
Sbjct: 29 GQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYL 88
Query: 113 -------------KACTRLLYRN--MGFCV--HGKIVK-------YGFEFNRFVRNSLIY 148
K TR LY M C +G++ K +++N N+++
Sbjct: 89 HNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVA 148
Query: 149 FHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVM 208
+A + A LFD D+V+W+S+ GY R GE+ + F+EM RD+VSWN+M
Sbjct: 149 GYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLM 208
Query: 209 I-------------------------------TGYAKQGEMEKANELFNEVPKRDVVSWN 237
+ G+A+ G++ +A LF+++P R+VV+WN
Sbjct: 209 VDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWN 268
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL--- 294
AMI+ YV +A+ +F EM + ++ +++ +G L+ +++ +
Sbjct: 269 AMIAAYVQNCHVDEAISLFMEM----PEKNSISWTTVINGYVRMGKLDEARQLLNQMPYR 324
Query: 295 -----LDMTSG------------------VAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
M SG + V+ N +I Y++CG ++ A+ +F M
Sbjct: 325 NVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMV 384
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV------------------------- 366
+D+ +W+T++ A G + +I +F EM+ +
Sbjct: 385 KKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFML 444
Query: 367 ------RPTEITFVGVLVACSHAGKVEEGKKYFKL-MRDEYNIEPNIRHYGVHGDVELGR 419
+P + TF L +C+H ++ GK+ +L M+ Y + + + + + G
Sbjct: 445 MGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGS 504
Query: 420 LANKRLL 426
+++ LL
Sbjct: 505 ISSAELL 511
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 114/242 (47%), Gaps = 37/242 (15%)
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
+ G++ A +F M ++ V+ N MI+ +AK G + A +LF+ +P+R++VSWN+MI+
Sbjct: 27 KSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAA 86
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL-GDLEVGKKVHCTLL------ 295
Y+ ++A ++F++M + D+ +L+ C G+L + + L
Sbjct: 87 YLHNDRVEEARQLFDKMPT-----RDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPV 141
Query: 296 ---DMTSGVAK------------------VLHGNALIDMYAKCGSIERAIEVFLGMRDRD 334
M +G AK ++ N+++ Y + G + ++ F M +RD
Sbjct: 142 CCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERD 201
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK 394
V +W+ ++ G G S F ++ P +++V +L + GK+ E ++ F
Sbjct: 202 VVSWNLMVDGFVEVGDLNSSWEFFEKIP----NPNTVSWVTMLCGFARFGKIAEARRLFD 257
Query: 395 LM 396
M
Sbjct: 258 QM 259
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 166/552 (30%), Positives = 260/552 (47%), Gaps = 90/552 (16%)
Query: 11 LWKKCTNLRTLKQIQAL------VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVK 64
L + TN ++ KQ Q L +I N+ + Y+G G ++ A +F
Sbjct: 65 LLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGC----GLMSQAEVIFDG 120
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
I ++F++N +IRG A + P+ ++ LY +M + + FT+ FVLKAC LL +G
Sbjct: 121 IVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIG 180
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
VH ++V G E + +V NSL+ +A GD+ TA ++FD A+ D+ +W+++ +GYA+
Sbjct: 181 RRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKN 240
Query: 185 GELSMARSLFDEM----------------------------------PVRDLVS------ 204
+ A +FD M VR+ +
Sbjct: 241 ADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFF 300
Query: 205 WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
N +I Y M A LF V +D VSWN+MI GY G ++L +F M G
Sbjct: 301 TNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGS 360
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
PD VT +++L AC + L G +H L+ A + G AL+DMY+KCGS+ +
Sbjct: 361 GPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFD-ANTIVGTALVDMYSKCGSLACSR 419
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
VF M D+ + +WS ++ G HG E+I++ M+ V P F +L ACSHAG
Sbjct: 420 RVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAG 479
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------------- 410
V EGK+ F M EYN++P + HY
Sbjct: 480 LVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAAL 539
Query: 411 -----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
+H +++L ++ +++ +M Y+ LSNIYA+ W+ VE+VR ++ +K
Sbjct: 540 LTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLK 599
Query: 466 KQPGCSLIEADD 477
K PGCS IE D+
Sbjct: 600 KSPGCSFIELDN 611
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 12/184 (6%)
Query: 254 EMFEEMRSVGERPDDVTMLS------LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+M E S+ E P L+ LL + + + G+++H ++ +
Sbjct: 39 QMVERSLSMREHPLQQYPLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLN 98
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
L YA CG + +A +F G+ ++ W+ +I G A +G +S+ ++REM R
Sbjct: 99 TKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQR 158
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFK------LMRDEYNIEPNIRHYGVHGDVELGRLA 421
T+ VL AC VE G++ L D Y + Y GD+ R+
Sbjct: 159 ADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMV 218
Query: 422 NKRL 425
R+
Sbjct: 219 FDRM 222
>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 153/530 (28%), Positives = 262/530 (49%), Gaps = 75/530 (14%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C + L QI A + G D + LI +++Y+ +F ++ P T+++N
Sbjct: 20 CKSEIHLNQIHARIIRKGLEQD----QNLISIFISSSSSSLSYSSSVFERVPYPGTYLWN 75
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSI-KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
+I+G + + V L +M + +P+++TF V+K C+ +G VHG +++
Sbjct: 76 HLIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRVGSTVHGLVLR 135
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF+ + + S + F+ C DL +A +F + +VV+W++L Y + GEL A+ +
Sbjct: 136 IGFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEAKRM 195
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS------------------ 235
FD MP R+L +WN ++ G K G++ A +LF+E+PKRD++S
Sbjct: 196 FDLMPERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDIISYTSMIDGYAKGGDMVSAR 255
Query: 236 -------------WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
W+A+I GY G +A ++F EM + +PD+ M+ L++AC+ +G
Sbjct: 256 DLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMG 315
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
E+ +KV L + + ALIDM AKCG ++RA ++F M RD+ ++ +++
Sbjct: 316 CFELCEKVDSYLHQSMNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMM 375
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G+A HG E++ +F +M + P E+ F +L CS + VEEG +YF+LMR EY+I
Sbjct: 376 EGMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVILKVCSQSRLVEEGLRYFELMRKEYSI 435
Query: 403 EPNIRHY---------------------------------------GVHGDVELGRLANK 423
+ HY +HG+ E+ + +
Sbjct: 436 LASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVAR 495
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+L + +G YVLLSNIYA+ W + +R M+++ IKK G S I
Sbjct: 496 QLFELEPQSAGSYVLLSNIYAALDRWADLAHLRDKMNENGIKKICGRSWI 545
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 135/414 (32%), Positives = 222/414 (53%), Gaps = 41/414 (9%)
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
P+ + SF L +CTR + +H V+ G + +V ++ + + D+ +A L
Sbjct: 70 PDHLSLSFSLHSCTRSPSLPVASLLHSFAVRLGHARDVYVLSAAVSAYFRATDVASAERL 129
Query: 163 FDGDAKM-DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA 221
F + DVV W+++ G+A G+L AR FD MP R++VSWN M+ YA G + KA
Sbjct: 130 FSYTKDVADVVTWTTMVTGHANTGDLERARWFFDAMPERNVVSWNAMLGAYASAGMLSKA 189
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
+LF+ +P R+ SW++M++G V ++AL +F EM +G P++ ++S ++AC+ L
Sbjct: 190 RKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSACSLL 249
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
LE G VH G++ VL A++DMY KCG I A+ VF M +++ +W+++
Sbjct: 250 RSLEHGVWVHAYAKRELQGMSLVL-ATAIVDMYGKCGGIHNAVRVFAAMPVKNIYSWNSM 308
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I GLA +G +++++F +MQ VRP +ITF+G+L ACSH+G V+EG+ F +M + +
Sbjct: 309 ITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGRWLFNMMVNGFG 368
Query: 402 IEPNIRHYG---------------------------------------VHGDVELGRLAN 422
I+P HYG +HG+VELG
Sbjct: 369 IQPVQEHYGLMVDLLGRAGHVREAVDFVNSMPVEPHPGLWGALAGACKIHGEVELGEEIA 428
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
K+L+ + Y+LLSNIY + W+ + VR+L+ D + K G +++ D
Sbjct: 429 KKLIELEPRHGSRYILLSNIYGASNRWDDMATVRRLLKDRKVPKGTGNAMVGND 482
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/262 (19%), Positives = 114/262 (43%), Gaps = 16/262 (6%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
G+ G ++ A K+F + + +++++ G +S +A+ ++++M + PN+
Sbjct: 178 GAYASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNES 237
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
+ AC+ L G VH + + + +++ + CG ++ A +F
Sbjct: 238 ALVSAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAM 297
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKAN 222
++ +W+S+ G A G A SLF +M + + ++ G + G +++
Sbjct: 298 PVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGR 357
Query: 223 ELFNEV-------PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
LFN + P ++ + M+ L G E + + S+ P +L
Sbjct: 358 WLFNMMVNGFGIQPVQE--HYGLMVD---LLGRAGHVREAVDFVNSMPVEPHPGLWGALA 412
Query: 276 TACADLGDLEVGKKVHCTLLDM 297
AC G++E+G+++ L+++
Sbjct: 413 GACKIHGEVELGEEIAKKLIEL 434
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 175/557 (31%), Positives = 272/557 (48%), Gaps = 104/557 (18%)
Query: 5 RHRSSR-------LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINY 57
RHR S L K + L +KQI + ++G S + L + + + G
Sbjct: 126 RHRVSPDRQTFLYLMKASSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMEL-GNFGV 184
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F ++ PD +N +I G A+ L+A+ LY +M I+P+++T +L C
Sbjct: 185 AEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGH 244
Query: 118 LLYRNMGFCVHGKIVKYG--FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
L +G VHG I + G + N + N+L+ + C +
Sbjct: 245 LSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKE-------------------- 284
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
+G A+R FD M +D+ SWN M+ G+ + G+ME A +F+++PKRD+VS
Sbjct: 285 ---SGLAKRA--------FDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVS 333
Query: 236 WNAMISGYVLCGMNKQAL-EMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCT 293
WN+++ GY G +++ + E+F EM V + +PD VTM+SL++ A+ G+L G+ VH
Sbjct: 334 WNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGL 393
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
++ + L +ALIDMY KCG IERA VF ++DV+ W+++I GLAFHG ++
Sbjct: 394 VIRLQLKGDAFL-SSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQ 452
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
++ +F MQ V P +T + VL ACSH+G VEEG F M+D++ +P HYG
Sbjct: 453 ALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLV 512
Query: 411 -----------------------------------VHG--DVELGRLANKRLLNMRKDES 433
G D+E LA LL + ++
Sbjct: 513 DLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKE 572
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCS----------LIEADD------ 477
G YVLLSNIYA+ G W +K R+ M++ +KK G S + A+
Sbjct: 573 GGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPRW 632
Query: 478 ---KAFLQYLFN-LKPK 490
K LQ+L+N +KPK
Sbjct: 633 TEIKRILQHLYNEMKPK 649
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%)
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
N P +V +N MIS + + ++ M PD T L L+ A + L +
Sbjct: 91 FLNFTPNPNVFVYNTMISA--VSSSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSE 148
Query: 284 LEVGKKVHCTLLDMTSGVAKVLH--GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
+ K++HC ++ SG + + N+L+ Y + G+ A +VF M DVS+++ +
Sbjct: 149 V---KQIHCHII--VSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVM 203
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
I G A GF+ E++ ++ +M + P E T + +LV C H + GK
Sbjct: 204 IVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGK 252
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 229/462 (49%), Gaps = 72/462 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F D F + ++ ++ ++A+ +++ M + ++ V+
Sbjct: 217 GMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVV 276
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + G HG +V+ G V+N LI+ +++C DVV
Sbjct: 277 AACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSC---------------QDVV 321
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
A AR LFD D SWN MI+GY K G +E A LF+ +P +D
Sbjct: 322 A----------------ARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKD 365
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW+AMI+G V + +AL +F+ MR+ +PDDVT++S+++AC++L LE GK VH
Sbjct: 366 NVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHE 425
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ + VL G +LIDMY KCG +E A+EVF + ++ W+ +I GLA +G
Sbjct: 426 YIRKYQYNITIVL-GTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVT 484
Query: 353 ESIAMFREMQRLKVR-PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411
S+ MF EM+ P EITF GVL AC H G VEEG+++FKLM+++Y I PNIRHYG
Sbjct: 485 RSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGC 544
Query: 412 ---------------------------------------HGDVELGRLANKRLLNMRKDE 432
HGD E+G K+L+ + D
Sbjct: 545 MVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEVGERVGKKLVKLDPDH 604
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
G +LSNIYAS G W V+ +R M + K GCS++E
Sbjct: 605 DGFQTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMVE 646
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/427 (27%), Positives = 214/427 (50%), Gaps = 41/427 (9%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSV----VIPGAINYAHKMFVKITE 67
+C + R L QI A +G +D+ +A R L+++ S ++P ++++ ++F +
Sbjct: 12 SRCCSARHLLQIHAQFLASGLLADAYAASRLLLFTTSATAARLLPHPLHHSLQLFGLVRS 71
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P+ F NT+++ + + P LY M P+ +T + AC G V
Sbjct: 72 PNAFTCNTLLKAALRQGFPHLCFPLYASMPA---APDTYTHPLLAAACAARGDVREGLQV 128
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H VK+GF N ++RN+L++ ++ CG + +A +FD D V+W+++ A Y R G++
Sbjct: 129 HSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTILATYVRDGDV 188
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
A +F MP R + + M+ +A++G +E+A +F+ RD +W AM+S +
Sbjct: 189 EQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERND 248
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+ +AL +F +MR G D+ M+S++ ACA G ++ G+ H ++ G ++V
Sbjct: 249 LFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLG-SRVNVQ 307
Query: 308 NALIDMYAKC-------------------------------GSIERAIEVFLGMRDRDVS 336
N LI MY+ C G +E A +F M D+D
Sbjct: 308 NVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNV 367
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+WS +I G + + E++ +F M+ +++P ++T V V+ ACS+ +E+GK + +
Sbjct: 368 SWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEYI 427
Query: 397 RD-EYNI 402
R +YNI
Sbjct: 428 RKYQYNI 434
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 159/483 (32%), Positives = 255/483 (52%), Gaps = 54/483 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G ++ + F +I + D + +N++I + + +A+ + Q+ S I+P+ +TF V
Sbjct: 65 GDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPV 124
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
LKAC L+ G +H K GF++N FV SLI+ ++ G A LFD D+
Sbjct: 125 LKACGTLV---DGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDM 181
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDL-------VS-WNVMITGYAKQGEMEKANE 223
+W+++ +G + G + A + DEM + + VS V + YAK G ++ A++
Sbjct: 182 GSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHK 241
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLSLLTACADLG 282
+F +P +DV+SWN +I+GY G+ +A+E+++ M E P+ T +S+L A A +G
Sbjct: 242 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 301
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
L+ G K+H ++ T+ V LID+Y KCG + A+ +F + TW+ +I
Sbjct: 302 ALQQGMKIHGRVIK-TNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAII 360
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
HG AE+++ +F EM V+P +TFV +L ACSH+G VEEGK F+LM+ EY I
Sbjct: 361 SCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGI 419
Query: 403 EPNIRHYG---------------------------------------VHGDVELGRLANK 423
+P+++HYG +HG++ELG+ A+
Sbjct: 420 KPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASD 479
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQY 483
RL + G YVLLSNIYA+ G+W V+KVR L + +KK PG S IE + K + Y
Sbjct: 480 RLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFY 539
Query: 484 LFN 486
N
Sbjct: 540 TGN 542
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 147/322 (45%), Gaps = 73/322 (22%)
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
F+F+ + T+ + C+H +V G + F+ L+ +AN GD++ + FD
Sbjct: 22 FNFLFDSSTKTPFAK---CLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIP 78
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEM--------------PVRDLV---------- 203
+ DV AW+S+ + Y G A F ++ PV
Sbjct: 79 QKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIH 138
Query: 204 --------SWNVMITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
WNV + Y++ G A LF+++P RD+ SWNAMISG + G
Sbjct: 139 CWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 198
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
QAL++ +EMR G + + VT++S+L
Sbjct: 199 QALDVLDEMRLEGIKMNFVTVVSILP--------------------------------VF 226
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPT 369
+DMYAK G ++ A +VF + +DV +W+TLI G A +G A E+I +++ M+ K + P
Sbjct: 227 VDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPN 286
Query: 370 EITFVGVLVACSHAGKVEEGKK 391
+ T+V +L A +H G +++G K
Sbjct: 287 QGTWVSILPAYAHVGALQQGMK 308
>gi|414878289|tpg|DAA55420.1| TPA: hypothetical protein ZEAMMB73_457942 [Zea mays]
Length = 534
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 165/521 (31%), Positives = 254/521 (48%), Gaps = 57/521 (10%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
+Q+Q + + G + A LI S PG V + +++ I A
Sbjct: 7 RQLQVQLLVRGLPLPARAAVSLIASSHS--PGHARAVFDNAVPTACENVYLWTATIAAYA 64
Query: 82 Q--SQNPL---DAVFLYTQMEKCSI-KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+ S +P A+ L+ M + + +PN FT S V++ C+ L +G VHG +V G
Sbjct: 65 RHASSSPSVAEGALTLFRLMLRHGVPRPNAFTASSVVRCCSALRAVRVGIQVHGFLVNAG 124
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
VR +L+ + N G + A +FD + VV +++ A Y R G++ R +FD
Sbjct: 125 LGRAEHVRAALVDMYGNHGRVADARRVFDEMSATSVVLGNTMVACYVRAGDVESGRVVFD 184
Query: 196 EMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
M RDL+SWN ++ GY +QG A ELF E+P R+V SWN I+ Y A+ +
Sbjct: 185 RMVERDLISWNTLMMGYLRQGGAGVARELFEEMPDRNVNSWNMAIAAYSQERSWADAVAV 244
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKVLHGNALI 311
F MR +PD TM L++ACA LG L V ++VH L ++M V N+LI
Sbjct: 245 FNRMRLARFQPDPATMAVLMSACAQLGSLSVARQVHGILRKGCVEMNFHVL-----NSLI 299
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DMYAKCGSI +A +F+ +D +++ +I LA HG +++ +F EM + +++P +
Sbjct: 300 DMYAKCGSISQAHLLFVETHLKDTVSYNVMICALARHGHGRDALQVFDEMSKERLQPDAV 359
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------------- 411
T +GVL AC+HAG V +GK YF+ M+ Y IE + HY
Sbjct: 360 TLLGVLSACAHAGLVHDGKFYFESMKTNYAIEQSPDHYACMVDLYGRAGLIKEAYELARA 419
Query: 412 -------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
H +VE+G++A + L+ + G YVLL+N A +W V
Sbjct: 420 MPMEPHAGVWGALINACRKHCNVEVGKVAARELIAIEPRNPGTYVLLANTLARGQQWEFV 479
Query: 453 EKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
E V + M I+K GCS +E ++ ++L PNS
Sbjct: 480 ETVWQSMRGKGIEKTAGCSWLEVENVVH-EFLMGESSHPNS 519
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 234/469 (49%), Gaps = 76/469 (16%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQS----QNPLDAVF-LYTQMEKCSIKPNKFTF 108
++ A ++F ++++ D ++ +I G AQS + +D VF L +M + + PNK TF
Sbjct: 308 SVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTF 367
Query: 109 SFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168
+L+ACT G +H ++ K GFE +R ++ ++ +A CG + A +F A
Sbjct: 368 MSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMAN 427
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+VVAW+S + Y + G+LS A +F EMP R++VSWN+MI GYA+ G++ K
Sbjct: 428 KNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVK-------- 479
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
E+ M++ G +PD VT++++L AC L LE GK
Sbjct: 480 -----------------------VFELLSSMKAEGFQPDRVTVITILEACGALAGLERGK 516
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
VH + + V+ +LI MY+KCG + A VF M +RD W+ ++ G H
Sbjct: 517 LVHAEAVKLGLESDTVV-ATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQH 575
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH 408
G E++ +F+ M + +V P EIT V+ ACS AG V+EG++ F++M++++ + P +H
Sbjct: 576 GDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQH 635
Query: 409 YGV---------------------------------------HGDVELGRLANKRLLNMR 429
YG H +V+L A +L +
Sbjct: 636 YGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELE 695
Query: 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ Y+ LSNIYA G W+ KVR++MDD +KK G S IE D +
Sbjct: 696 PSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGR 744
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 184/408 (45%), Gaps = 76/408 (18%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A ++F ++T D ++++I A + +P A + +M +I+PN+ TF +LKAC
Sbjct: 110 AEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNN 169
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
G +H + G E + V +LI ++ CG+++ A +F + +VV+W+++
Sbjct: 170 YSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAI 229
Query: 178 TAGYARRGELSMARSLFDEMPV-------------------------------------- 199
A+ +L+ A L+++M
Sbjct: 230 IQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGL 289
Query: 200 -RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN-----KQAL 253
D++ N +IT Y K +++A E+F+ + KRDV+SW+AMI+GY G +
Sbjct: 290 ETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVF 349
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
++ E MR G P+ VT +S+L AC G LE G+++H L + + + L A+ +M
Sbjct: 350 QLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQ-TAIFNM 408
Query: 314 YAKCGSIERAIEVFLGMRD-------------------------------RDVSTWSTLI 342
YAKCGSI A +VF M + R+V +W+ +I
Sbjct: 409 YAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMI 468
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
G A +G + + M+ +P +T + +L AC +E GK
Sbjct: 469 AGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGK 516
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 167/348 (47%), Gaps = 45/348 (12%)
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147
+A+ L +++ + N T+ V++ C + G VH ++ + G E + ++ NSLI
Sbjct: 39 EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLI 98
Query: 148 YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------PVR- 200
F++ D+ +A +F DVV WSS+ A YA + A F+ M P R
Sbjct: 99 NFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRI 158
Query: 201 --------------------------------DLVSWNVMITGYAKQGEMEKANELFNEV 228
D+ +IT Y+K GE+ A E+F+++
Sbjct: 159 TFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKM 218
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
+R+VVSW A+I +A E++E+M G P+ VT +SLL +C L G+
Sbjct: 219 TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGR 278
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
++H + + ++ NALI MY KC S++ A E+F M RDV +WS +I G A
Sbjct: 279 RIHSHISERGLETDMIV-ANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQS 337
Query: 349 GFA-----EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
G+ +E + M+R V P ++TF+ +L AC+ G +E+G++
Sbjct: 338 GYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQ 385
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 245 LC--GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
LC G ++A+++ ++ G + T ++ CA E GK VH L ++ +
Sbjct: 31 LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEID 90
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L GN+LI+ Y+K + A +VF M RDV TWS++I A + ++ F M
Sbjct: 91 IYL-GNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
+ P ITF+ +L AC++ +E+G+K +++
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVK 184
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 236/490 (48%), Gaps = 110/490 (22%)
Query: 93 YTQMEKCSIKPNKFTFSFVLKACTRL-LYRNMGFCVHGKIVKYGFEFNRFVRN------- 144
Y M + PN FTF+F+L+AC L L R G CVHG+IV+ GF + FV+N
Sbjct: 98 YVAMRAQGVPPNGFTFTFLLRACALLGLPRPCG-CVHGQIVRCGFGSDVFVQNALMDVYY 156
Query: 145 -----------------------------SLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
S++ + + GD A LF+ + +VV+W+
Sbjct: 157 RCGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWN 216
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYA---------------------- 213
++ AG+AR G++ AR++FD MP R+ VSWN+MI+GYA
Sbjct: 217 TVVAGFARTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVS 276
Query: 214 ---------KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
K G+++ A ELF+ +P +++VSWNAMI+GY +AL F+ M G
Sbjct: 277 WTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGR 336
Query: 265 -RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
RPD+ T++S+++ACA LG +E + + + ++ V GNALIDM+AKCG + RA
Sbjct: 337 FRPDEATLVSVVSACAQLGSVEYCNWIS-SFIGKSNTHLTVALGNALIDMFAKCGDVGRA 395
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+F M R + TW+T+I G AF+G E++ ++ M R V F+ L AC+H
Sbjct: 396 QSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHG 455
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G ++EG F M ++YNI+P + HYG
Sbjct: 456 GLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVT 515
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
HG+ EL +K++ + S VL+SN A G W+ V R M + I
Sbjct: 516 LLSSCVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIGARTSMRNWGI 575
Query: 465 KKQPGCSLIE 474
+K PG SLI+
Sbjct: 576 EKVPGSSLIQ 585
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/419 (35%), Positives = 224/419 (53%), Gaps = 71/419 (16%)
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVH 128
TF++N +I SA S +P + ++ + + P+ FTF ++K+ +RL + G V+
Sbjct: 57 TFLHNLLIHASAASPSPRLSFAAFSSLLRSGYLPDHFTFPPLVKSASRLSSFPRTGAQVY 116
Query: 129 GKIVKYGFEFNRFVRNSL--------------------------------IYFHANCGDL 156
+ + GF + FV NSL ++ +A CG++
Sbjct: 117 AQAARRGFLADTFVVNSLLAMYAAFRDTASMRAVFESCAEVADVVSWNTVVFGYAKCGEI 176
Query: 157 NTASVLFD------------------GDAKMDV---------------VAWSSLTAGYAR 183
A +FD ++DV + W+ + G+ R
Sbjct: 177 GNARRVFDEMPHRNGVSWSVMVGAYAAAGELDVAREMFDRMPAIGRNIITWNLMVTGFGR 236
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G L +AR +FDEMP+R++VSWN M+ GYA GEM+ A ELF+ +P++DVVSW MISGY
Sbjct: 237 HGLLPLARKMFDEMPIRNIVSWNAMLRGYAMNGEMDVARELFDVMPEKDVVSWTCMISGY 296
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
G Q LE+F M+S G+ RP++VTM+S+L+ACA L LE G+ H +D V
Sbjct: 297 AQAGRYAQTLELFRTMQSHGDIRPNEVTMVSVLSACAHLTALEEGRWAH-VFIDKHKMVL 355
Query: 303 --KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ G ALIDMYAKCG + A ++F + ++VS W+ LI GLA + A I +F +
Sbjct: 356 DNEFNLGAALIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQ 415
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419
M+ + +P +ITFV VL AC+HAG V+EG++YF+ M ++P ++HYG D+ LGR
Sbjct: 416 MKMSEEKPDDITFVSVLTACAHAGLVDEGRQYFQSMSSACGVQPELKHYGCMVDL-LGR 473
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 109/229 (47%), Gaps = 42/229 (18%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N+++ +A G+++ A LFD + DVV+W+ + +GYA+ G + LF M +
Sbjct: 259 NAMLRGYAMNGEMDVARELFDVMPEKDVVSWTCMISGYAQAGRYAQTLELFRTMQSHGDI 318
Query: 204 SWN------------------------------------------VMITGYAKQGEMEKA 221
N +I YAK G + A
Sbjct: 319 RPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEFNLGAALIDMYAKCGRTDLA 378
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
++F+ + +++V +WNA+I+G + ++ +++FE+M+ E+PDD+T +S+LTACA
Sbjct: 379 TKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPDDITFVSVLTACAHA 438
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
G ++ G++ ++ ++ H ++D+ + G ++ A E+ GM
Sbjct: 439 GLVDEGRQYFQSMSSACGVQPELKHYGCMVDLLGRAGLLDEAEELIRGM 487
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 11/185 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CSIKPNKFTFSFV 111
G ++ A ++F + E D + +I G AQ+ + L+ M+ I+PN+ T V
Sbjct: 269 GEMDVARELFDVMPEKDVVSWTCMISGYAQAGRYAQTLELFRTMQSHGDIRPNEVTMVSV 328
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGF----EFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
L AC L G H I K+ EFN + +LI +A CG + A+ +F
Sbjct: 329 LSACAHLTALEEGRWAHVFIDKHKMVLDNEFN--LGAALIDMYAKCGRTDLATKIFHSLD 386
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANE 223
+ +V AW++L G A + +F++M + D +++ ++T A G +++ +
Sbjct: 387 QKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPDDITFVSVLTACAHAGLVDEGRQ 446
Query: 224 LFNEV 228
F +
Sbjct: 447 YFQSM 451
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 10/170 (5%)
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
VA V+ N ++ YAKCG I A VF M R+ +WS ++G A G + + MF
Sbjct: 157 VADVVSWNTVVFGYAKCGEIGNARRVFDEMPHRNGVSWSVMVGAYAAAGELDVAREMFDR 216
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM--RDEYNIEPNIRHYGVHGDVELG 418
M + IT+ ++ G + +K F M R+ + +R Y ++G++++
Sbjct: 217 MP--AIGRNIITWNLMVTGFGRHGLLPLARKMFDEMPIRNIVSWNAMLRGYAMNGEMDVA 274
Query: 419 RLANKRLLN-MRKDESGDYVLLSNIYASRGEWNR-VEKVRKLMDDSDIKK 466
R L + M + + + + + YA G + + +E R + DI+
Sbjct: 275 R----ELFDVMPEKDVVSWTCMISGYAQAGRYAQTLELFRTMQSHGDIRP 320
>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
Length = 711
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 165/547 (30%), Positives = 261/547 (47%), Gaps = 85/547 (15%)
Query: 15 CTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
C + + KQ I + NGF SD +LI V G + A +F + E
Sbjct: 161 CIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIF--YVKVGDVIAARNVFDGMPERSVV 218
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+ ++ G +Q+ A L++ M C +K N+FT+ L+ACT L +MG V G I
Sbjct: 219 SWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCI 278
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG----EL 187
K F N FV+++L+ FH+ CG + AS LF + DVV+W+++ GYA +G
Sbjct: 279 QKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSF 338
Query: 188 SMARSLFDEMPVRDLVSW-----------------------------------NVMITGY 212
M RS+ V D + ++I Y
Sbjct: 339 CMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAY 398
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM-NKQALEMFEEMRSVGERPDDVTM 271
AK G + A +L + K+D+ S A+I+GY G+ + AL++F+EM + DDV +
Sbjct: 399 AKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVIL 458
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
S+L CA+L +G ++H L V GNALIDMYAK G IE A F M
Sbjct: 459 CSMLNICANLASFALGTQIHAFALKYQPSY-DVAMGNALIDMYAKSGEIEDAKRAFDEME 517
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+++V +W++LI G A HG+ +++++++M+ +P ++TF+ +L ACSH G EG +
Sbjct: 518 EKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCE 577
Query: 392 YFKLMRDEYNIEPNIRHY---------------------------------------GVH 412
F M ++YNI+P HY ++
Sbjct: 578 CFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIY 637
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
G + LG+ A L NM+ + S +YV+L++IY++ G W+ K+RKLM++ KK G S
Sbjct: 638 GYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSF 697
Query: 473 IEADDKA 479
+A K+
Sbjct: 698 FQATKKS 704
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/515 (30%), Positives = 251/515 (48%), Gaps = 78/515 (15%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
TN RL C +L L QI A + ++GF S + LI S+ + A +F
Sbjct: 50 TNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHS-ITHLINLYSLF--HKCDLARSVF 106
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
P ++N++IR +S+ +A+ +Y
Sbjct: 107 DSTPNPSRILWNSMIRAYTRSKQYNEALEMY----------------------------- 137
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
+C+ + K G E + F+ L+ ++ GDL A +FD K DVVAW+++ AG +
Sbjct: 138 --YCM---VEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLS 192
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
+ + +AR +FD+M +D VSW M+ GYA G + ELF+++ K V+WN +I+
Sbjct: 193 QSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM-KLGNVTWNVIIAA 251
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
Y+ G K+A+ F +MR P+ VT +S+L A A L G H ++ M ++
Sbjct: 252 YMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQM-GFLS 310
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L GN+LIDMYAKCG ++ + ++F M +D +W+ ++ G A HG + +IA+F MQ
Sbjct: 311 NTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQ 370
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------ 410
+V+ ++FV VL AC HAG VEEG+K F M D+Y+I+P++ HY
Sbjct: 371 ESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLF 430
Query: 411 ---------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
+H +V+LG +A L+ + +V+LS+IY
Sbjct: 431 DETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIY 490
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
A G W K R M+D +KK PGCS +E +K
Sbjct: 491 AQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNK 525
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/500 (30%), Positives = 243/500 (48%), Gaps = 80/500 (16%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F ++ + D +NT+I QS +A+ + M + +P+ T + + +C R
Sbjct: 160 AVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCAR 219
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
LL + G +H ++V GF + FV +L+ + CG L A +F+ VVAW+S+
Sbjct: 220 LLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSM 279
Query: 178 TAGYARRGELSMARSLFDEM----------------------------------PVRDLV 203
GY +G+ LF M +R+ +
Sbjct: 280 INGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRI 339
Query: 204 SWNVMITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
++ + Y K G++E A +F +PK VSWN MISGYV G AL +F E
Sbjct: 340 QPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGE 399
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M PD +T S+L AC+ L LE G+++H +++ G +V+ G AL+DMYAKCG
Sbjct: 400 MSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMG-ALLDMYAKCG 458
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
++E A VF + +RD+ +W+++I HG E++ +F EM + V+P +TF+ +L
Sbjct: 459 AVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILS 518
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------- 410
ACSHAG V++G +F M + Y I P I HY
Sbjct: 519 ACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDD 578
Query: 411 ------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
+H +++LG + L++ D+S Y++LSN+YAS G+W+ V VR
Sbjct: 579 FQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSK 638
Query: 459 MDDSDIKKQPGCSLIEADDK 478
M D +KK PGCS IE ++K
Sbjct: 639 MKDLGLKKNPGCSWIEINEK 658
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/430 (26%), Positives = 195/430 (45%), Gaps = 47/430 (10%)
Query: 11 LWKKCTNLRTLKQIQAL---VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
L + N ++LKQ + L V G +D + LI V +YA +F I
Sbjct: 9 LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLI--SLYVSCNLFDYAKNVFDVIEN 66
Query: 68 P-DTFMYNTIIRGSAQSQNPLDAVFLYTQ-MEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
P + + N ++ G ++ +A+ L+ + M +KP+ +T+ VLKAC L +G
Sbjct: 67 PFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQ 126
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H +VK G + V +SL+ +A C + A LFD DV W+++ + Y + G
Sbjct: 127 MIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSG 186
Query: 186 ELSMARSLF----------DEMPVRDLVS-----------------------------WN 206
+ A F D + + +S
Sbjct: 187 KFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSA 246
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
++ Y K G++E A E+F ++P + VV+WN+MI+GY G +++F+ M S G +P
Sbjct: 247 ALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKP 306
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
T+ S L AC+ L GK VH ++ + ++L+D+Y KCG +E A +
Sbjct: 307 TLTTLTSTLMACSQSAQLLEGKFVHGYIIR-NRIQPDIFLNSSLMDLYFKCGKVESAETI 365
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F M +W+ +I G G +++ +F EM + V P ITF VL ACS +
Sbjct: 366 FKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAAL 425
Query: 387 EEGKKYFKLM 396
E+G++ L+
Sbjct: 426 EKGREIHNLI 435
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 151/337 (44%), Gaps = 41/337 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F ++ +N++I G + + + L+ +M +KP T + L
Sbjct: 256 GQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTL 315
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC++ G VHG I++ + + F+ +SL+ + CG + +A +F K V
Sbjct: 316 MACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTV 375
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP-----------------------------VRDL- 202
+W+ + +GY G+L A LF EM + +L
Sbjct: 376 SWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLI 435
Query: 203 ---------VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
V ++ YAK G +E+A +F +P+RD+VSW +MI+ Y G +AL
Sbjct: 436 VERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEAL 495
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
E+F EM +PD VT L++L+AC+ G ++ G ++++ + ++ H + LI +
Sbjct: 496 ELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITL 555
Query: 314 YAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFH 348
+ G + A E+ + D STL H
Sbjct: 556 LGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLH 592
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 17/256 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F + + T +N +I G DA+ L+ +M K ++P+ TF+ VL
Sbjct: 357 GKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVL 416
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC++L G +H IV+ N V +L+ +A CG + A +F + D+V
Sbjct: 417 AACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLV 476
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNE- 227
+W+S+ Y G + A LF EM D V++ +++ + G ++ FN+
Sbjct: 477 SWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQM 536
Query: 228 ------VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS-LLTACAD 280
+P+ + ++ +I+ L G + E +E ++S E DD +LS L +AC
Sbjct: 537 INVYGIIPR--IEHYSCLIT---LLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRL 591
Query: 281 LGDLEVGKKVHCTLLD 296
+L++G ++ L+D
Sbjct: 592 HKNLDLGVEIAENLID 607
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 9/219 (4%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSW-NAMISGYVLCGMNKQALEMFEEMRSVG-ER 265
+I+ Y + A +F+ + +S N +++GY M +AL +F+++ +
Sbjct: 44 LISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLK 103
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD T S+L AC L + +G+ +H T L + ++ G++L+ MYAKC E A++
Sbjct: 104 PDSYTYPSVLKACGGLRRVVLGQMIH-TCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVK 162
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+F M D+DV+ W+T+I G EE++ F M+R P +T + +C+
Sbjct: 163 LFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLD 222
Query: 386 VEEGKKYFKLM------RDEYNIEPNIRHYGVHGDVELG 418
++ G++ K + D + + YG G +E+
Sbjct: 223 LDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMA 261
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 167/530 (31%), Positives = 251/530 (47%), Gaps = 106/530 (20%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG-AINYAHKMFVKITEPDTFMYN 74
T L+T KQI + + G ++ +L+ + +V I +NY+ ++F PDTFMYN
Sbjct: 21 TTLKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYSLRLFHHFPNPDTFMYN 80
Query: 75 TIIRGSAQSQNPLDAVFLYTQ-MEKCSIKPNKFTFSFVLK-----ACTRLLYRNMGFCVH 128
T+IR + S PL ++ + Q + ++ P+ F+F+F LK C+ + G +H
Sbjct: 81 TLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCS----KRQGIQLH 136
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG--- 185
++GF+ + FV +LI +A CG A +FD ++ +VVAW+++ R G
Sbjct: 137 SHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWR 196
Query: 186 ----ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
+F EM +RD SW+ MI G+AK G
Sbjct: 197 VLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFH---------------------- 234
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
A F+E+ RP +V++ +L+ACA G E GK +H ++ +
Sbjct: 235 ---------DAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFGKILH-GFMEKAGFL 284
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
V NALID Y+KCG+++ A VF ++S LA HG A+E+I +F EM
Sbjct: 285 CIVSVNNALIDTYSKCGNVDMAKLVF------NIS--------LAMHGRADEAIRVFHEM 330
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
+ VRP +TF+ +L ACSH+G VE+G F MR+ Y IEP I HYG
Sbjct: 331 EESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYGRAAR 390
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+HG++EL L RL M + SGD+VLLSN+
Sbjct: 391 LQKAYEFIRQMPILPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVLLSNV 450
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPN 492
YA G+W V +R+ M + +KK PG S+IE D + Y F KPN
Sbjct: 451 YAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDK---VNYGFVAGEKPN 497
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 166/548 (30%), Positives = 260/548 (47%), Gaps = 86/548 (15%)
Query: 13 KKC---TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
K+C +L KQ+ + + ++ + L++ + G + A +F + +
Sbjct: 36 KRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHV--YIECGRLQEARCVFDALVKKS 93
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+N +I G + ++ DA+ L+ +M ++PN T+ +LKAC L G VH
Sbjct: 94 GASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHA 153
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE--- 186
I G E + V +L+ + CG +N A +FD D+++W+ + YA+ G
Sbjct: 154 CIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKE 213
Query: 187 -----LSMAR-----------SLFDEMPVRDLVSW--------------------NVMIT 210
L M + S+ + + W ++
Sbjct: 214 AYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQ 273
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
YAK G ++ A +F+ + RDVVSWN MI + G +A ++F +M++ G +PD +
Sbjct: 274 MYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIM 333
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLG 329
LS+L ACA G LE KK+H LD SG+ V G AL+ MY+K GSI+ A VF
Sbjct: 334 FLSILNACASAGALEWVKKIHRHALD--SGLEVDVRVGTALVHMYSKSGSIDDARVVFDR 391
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M+ R+V +W+ +I GLA HG ++++ +FR M V+P +TFV VL ACSHAG V+EG
Sbjct: 392 MKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEG 451
Query: 390 KKYFKLMRDEYNIEPNIRH--------------------------------YG------- 410
+ + M Y IEP++ H +G
Sbjct: 452 RSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCR 511
Query: 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470
+G+VELG L K L + + YVLLSNIYA G+W+ V VR +M + I+K+PG
Sbjct: 512 TYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGR 571
Query: 471 SLIEADDK 478
S IE D+K
Sbjct: 572 SWIEVDNK 579
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 13/153 (8%)
Query: 267 DDVTMLSLLTACADLGDLEVGKKVH-CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
D + +L C DL K+VH C + A V+ N L+ +Y +CG ++ A
Sbjct: 27 DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVM--NNLLHVYIECGRLQEARC 84
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VF + + ++W+ +I G H AE+++ +FREM V+P T++ +L AC+
Sbjct: 85 VFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSA 144
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELG 418
++ GK+ + IRH G+ DV +G
Sbjct: 145 LKWGKE----------VHACIRHGGLESDVRVG 167
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/501 (31%), Positives = 254/501 (50%), Gaps = 77/501 (15%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
G++ G I A ++F ++ DT +N+II G ++ ++ L+ M P K
Sbjct: 55 GNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLM------PTKN 108
Query: 107 TFSF--VLKACTR-------------LLYRNM--------GFCVHGKIVKYGFEFNRFVR 143
S+ ++ C + RN G + ++ + F R
Sbjct: 109 VVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPR 168
Query: 144 NSLIYF------HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
++I + +A G++ A LF+ + +VV+W+ + +GY G+ A +LF++M
Sbjct: 169 RNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQM 228
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
P +++V+ MITGY K+G+ +KA LF+++P RD+ SWNAMI+GY G ++AL++
Sbjct: 229 PDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHS 288
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAK 316
+M +G +PD T++S+LTAC+ L L+ G+K H +L + SG +++ NALI MY K
Sbjct: 289 QMLKMGMQPDHSTLISVLTACSSLASLQEGRKTH--VLVLKSGYESRISICNALITMYCK 346
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CGSI + F + DV +W+ +I A HGF + ++A F EM+ +V P ITF+ +
Sbjct: 347 CGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSL 406
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------- 410
L AC HAGKV E +F M Y I H+
Sbjct: 407 LSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEA 466
Query: 411 -------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
VH +V+LG LA K+++ + SG YV+LSNIYA+ G W V +VR
Sbjct: 467 DCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRG 526
Query: 458 LMDDSDIKKQPGCSLIEADDK 478
LM + +KKQP S +E D+K
Sbjct: 527 LMREQGVKKQPAYSWMEIDNK 547
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 137/354 (38%), Gaps = 65/354 (18%)
Query: 46 SGSVVIPGAINY-----AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS 100
S + +I G + Y A ++F ++ + Y ++ G A+ A L+ M
Sbjct: 142 SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCM---- 197
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA------NCG 154
P K S+ + G+ +GK + F + +++ A G
Sbjct: 198 --PQKNVVSWTVMIS--------GYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEG 247
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM----------------- 197
+ A +LFD D+ +W+++ GYA+ G A L +M
Sbjct: 248 KTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLT 307
Query: 198 PVRDLVSW----------------------NVMITGYAKQGEMEKANELFNEVPKRDVVS 235
L S N +IT Y K G + + F ++ DVVS
Sbjct: 308 ACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVS 367
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WNAMI+ + G +AL F EMRS PD +T LSLL+AC G + +++
Sbjct: 368 WNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMI 427
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFH 348
V + H L+D+ ++ G +E+A ++ M + D W L+ H
Sbjct: 428 XSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVH 481
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 163/556 (29%), Positives = 258/556 (46%), Gaps = 112/556 (20%)
Query: 18 LRTLKQIQALVTIN-GFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
++TL ++ + + IN D + +L+ + S G + A +F + E + +N +
Sbjct: 51 IKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSA--QGETSVARYIFDRSLEKNVVFFNVM 108
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
IR + ++A+ ++ M C+ P+ +TF VLKAC+ L +G VH IVK G
Sbjct: 109 IRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGL 168
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
+ N F+ N+L+ + CG L A R + D+
Sbjct: 169 DTNLFIGNALVAMYGKCGCLREA-------------------------------RKVLDQ 197
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANE--------------------------------- 223
MP RD+VSWN M+ GYA+ G+ + A E
Sbjct: 198 MPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQ 257
Query: 224 ----LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
+F + K++++SWN MI+ YV M +A+ +F +M G +PD VT+ SLL AC
Sbjct: 258 YIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACG 317
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
DL L +G+++H ++ + +L NAL+DMYAKCG +E A +VF MR RDV +W+
Sbjct: 318 DLSALFLGRRLH-KYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWT 376
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+++ G +++A+F +M P I FV VL ACSH G +++G+ YF++M ++
Sbjct: 377 SMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQ 436
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y I P I H+ VH +++G +
Sbjct: 437 YGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLV 496
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
A L + +SG YVLLSNIYA G W V VR M IKK PG S +E + +
Sbjct: 497 AADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVH 556
Query: 481 LQYLFNLKPKPNSGNL 496
+L + P + N+
Sbjct: 557 -TFLAGDQYHPQAKNI 571
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/436 (35%), Positives = 227/436 (52%), Gaps = 76/436 (17%)
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162
PN++TF FV KAC L G + +K G E N FV N++I +AN G ++ A +
Sbjct: 30 PNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRV 89
Query: 163 FDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222
FD WS D+ DL SWN+MI GY GE+ +A
Sbjct: 90 FD---------WS------------------LDQ----DLYSWNIMIGGYVGSGEIGRAK 118
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
E+F+E+ +RDVVSW +I+GYV G K+AL++F EM G P++ T+ S L ACA+L
Sbjct: 119 EMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLV 178
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF---LGMRDRDVSTWS 339
L+ G+ +H + + + L +L+DMYAKCG I+ A +VF G++ + V W+
Sbjct: 179 ALDQGRWIHVYIDKSEIKMNERLLA-SLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWN 236
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+IGG A HG ++E+I +F +M+ KV P ++TFV +L ACSH VEEG+ YFK M
Sbjct: 237 AMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASS 296
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y IEP I HYG +H D+E G+
Sbjct: 297 YGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQR 356
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
K + + D G +VLL+N+Y++ G+W+ + VR+ ++ S KK PGCS IE + F
Sbjct: 357 IGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNG-VF 415
Query: 481 LQYLFNLKPKPNSGNL 496
Q+L + P + L
Sbjct: 416 HQFLVGDRSHPQTKQL 431
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 121/258 (46%), Gaps = 14/258 (5%)
Query: 44 IYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP 103
I G V G I A +MF +++E D + TII G Q +A+ L+ +M + P
Sbjct: 103 IMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPP 162
Query: 104 NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF 163
N+FT + L AC L+ + G +H I K + N + SL+ +A CG+++ A+ +F
Sbjct: 163 NEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVF 222
Query: 164 DGD--AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGE 217
+ K+ V W+++ GYA G+ A LF++M V + V++ ++ +
Sbjct: 223 HDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKL 282
Query: 218 MEKANELFNEVP-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
+E+ F + + ++ + M+ G+ K+A E M PD
Sbjct: 283 VEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMA---PDATIWG 339
Query: 273 SLLTACADLGDLEVGKKV 290
+LL AC D+E G+++
Sbjct: 340 ALLGACRIHKDIERGQRI 357
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 197/358 (55%), Gaps = 43/358 (12%)
Query: 160 SVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR-DLVSWNVMITGYAKQGEM 218
S+L D A +SL Y G ++ AR +FDE D+VSWNVMI GY K G++
Sbjct: 99 SLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKSGDL 158
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+A ELF+ +P R+VVSW +I Y ++A+E+F M+ G PD V +LS+L+AC
Sbjct: 159 ARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSAC 218
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
DLG +++G+ VH +L G+ + + NA+IDMY KCGS+++A+EVF GM + + T
Sbjct: 219 GDLGVVDLGEWVHRFVL--RRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVT 276
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+T+I G A HG E++ +FR M++ V P +ITF+ VL CSH G + G+ YFK M
Sbjct: 277 WTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMV 336
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
+Y I+P + HYG HGD ELG
Sbjct: 337 SQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELG 396
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
A L+ + SG+Y+LLSNIYA + W+ V ++R M D ++ PG S I+ D
Sbjct: 397 EQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDVD 454
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 36 DSSALRELIYSGSVVIPGAINY-----AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAV 90
D +A + S +V+I G + A ++F + + + +I AQ + P +A+
Sbjct: 134 DETAASADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAI 193
Query: 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150
++ +M+ I+P+ VL AC L ++G VH +++ G + N++I +
Sbjct: 194 EVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMY 253
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
CG + A +F+G + +V W+++ AG+A G A LF M
Sbjct: 254 VKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRM 300
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 155/498 (31%), Positives = 247/498 (49%), Gaps = 85/498 (17%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTI 76
++ A GF D+ Y+GS ++ G ++ A K+F ++ ++N +
Sbjct: 69 RKAHAAAVKTGFRWDA-------YTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMM 121
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
+R + AV L QME+ + P++ T + AC+R ++G +H + F
Sbjct: 122 VRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-F 180
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
FN V N+L+ D+ Y + L A LF++
Sbjct: 181 GFNLPVANALL-------DM------------------------YTKNDCLEEAVKLFEQ 209
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP R+++SW ++++GY G+++KA LFN+ ++D++ W AMI+ V G ++AL +F
Sbjct: 210 MPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLF 269
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
+M+ PD T+++LLT CA+LG L+ G+ +H + VL G ALIDMY+K
Sbjct: 270 RDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVL-GTALIDMYSK 328
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CG IE+++EVF M+ RD + W+ +I GLA +G A ++ +F++MQR KV+P +TF+GV
Sbjct: 329 CGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGV 388
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------- 410
L AC H G V+EG+K F MR+ Y IEP + HY
Sbjct: 389 LSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPINK 448
Query: 411 --------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
HG+VE+ KR+ + +L+SN+YA+ W V +VR
Sbjct: 449 DAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVYATASRWEDVIRVR 508
Query: 457 KLMDDSDIKKQPGCSLIE 474
M +KK GCSLIE
Sbjct: 509 GKMAHPTVKKNAGCSLIE 526
>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1724
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 165/552 (29%), Positives = 264/552 (47%), Gaps = 85/552 (15%)
Query: 10 RLWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
++ + C + + KQ I + NGF SD +LI V G + A +F +
Sbjct: 35 KILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIF--YVKVGDVIAARNVFDGMP 92
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
E + ++ G +Q+ A L++ M C +K N+FT+ L+ACT L +MG
Sbjct: 93 ERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQ 152
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG- 185
V G I K F N FV+++L+ FH+ CG + AS LF + DVV+W+++ GYA +G
Sbjct: 153 VQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGF 212
Query: 186 ---ELSMARSLFDEMPVRDL-----------------------------------VSWNV 207
M RS+ V D + +
Sbjct: 213 ADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGL 272
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM-NKQALEMFEEMRSVGERP 266
+I YAK G + A +L + K+D+ S A+I+GY G+ + AL++F+EM +
Sbjct: 273 LINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGM 332
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
DDV + S+L CA+L +G ++H L V GNALIDMYAK G IE A
Sbjct: 333 DDVILCSMLNICANLASFALGTQIHAFALKYQPSY-DVAMGNALIDMYAKSGEIEDAKRA 391
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F M +++V +W++LI G A HG+ +++++++M+ +P ++TF+ +L ACSH G
Sbjct: 392 FDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLT 451
Query: 387 EEGKKYFKLMRDEYNIEPNIRHY------------------------------------- 409
EG + F M ++YNI+P HY
Sbjct: 452 AEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILG 511
Query: 410 --GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
++G + LG+ A L NM+ + S +YV+L++IY++ G W+ K+RKLM++ KK
Sbjct: 512 ASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKN 571
Query: 468 PGCSLIEADDKA 479
G S +A K+
Sbjct: 572 AGYSFFQATKKS 583
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 148/545 (27%), Positives = 239/545 (43%), Gaps = 90/545 (16%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
NL+ + I LV G +S+ L+ YS + G A +F +TE D +N
Sbjct: 1063 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEA----GRSEDAELVFQAMTERDLISWN 1118
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
+++ Q LD + + ++ + N TF+ L AC+ VH I+
Sbjct: 1119 SMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVA 1178
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
GF V N+L+ + G + A + + D V W++L G+A E + A +
Sbjct: 1179 GFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAY 1238
Query: 195 ------------------------------DEMPVR-----------DLVSWNVMITGYA 213
MP+ D V N +IT YA
Sbjct: 1239 KLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVK-NSLITMYA 1297
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
K G++ +N +F+ + + ++WNAM++ G ++AL++F EMR+VG D +
Sbjct: 1298 KCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSG 1357
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRD 332
L A A+L LE G+++H ++ + G LH NA +DMY KCG + +++ +
Sbjct: 1358 GLAATANLAVLEEGQQLHGLVIKL--GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPIN 1415
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
R +W+ LI A HG +++ F EM +L +P +TFV +L AC+H G V+EG Y
Sbjct: 1416 RSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAY 1475
Query: 393 FKLMRDEYNIEPNIRH---------------------------------------YGVHG 413
+ M E+ + P I H +HG
Sbjct: 1476 YDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHG 1535
Query: 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
++EL R + LL + + YVL SN+ A+ G+W VE +RK M ++IKKQP CS +
Sbjct: 1536 NLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWV 1595
Query: 474 EADDK 478
+ DK
Sbjct: 1596 KLKDK 1600
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 186/400 (46%), Gaps = 46/400 (11%)
Query: 23 QIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
Q+ V G D L+ + GS+ G + A K+F ++ + + + +++ G +
Sbjct: 867 QVHGFVVKTGILGDVYVGTALVHFYGSI---GLVYNAQKLFEEMPDHNVVSWTSLMVGYS 923
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
S NP + + +Y +M + + N+ TF+ V +C L + +G+ V G I++YGFE +
Sbjct: 924 DSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVS 983
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM---- 197
V NSLI ++ + A +FD + D+++W+++ + YA G + F M
Sbjct: 984 VANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLH 1043
Query: 198 ---------------PVRDLVSW--------------------NVMITGYAKQGEMEKAN 222
D + W N ++T Y++ G E A
Sbjct: 1044 NETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAE 1103
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+F + +RD++SWN+M++ YV G L++ E+ +G+ + VT S L AC++
Sbjct: 1104 LVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPE 1163
Query: 283 DLEVGKKVHCTLLDMTSGVAKVL-HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
L K VH ++ +G L GNAL+ MY K G + A +V M D TW+ L
Sbjct: 1164 CLIESKIVHALII--VAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNAL 1221
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
IGG A + E++ ++ ++ + IT V VL ACS
Sbjct: 1222 IGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 1261
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/414 (24%), Positives = 187/414 (45%), Gaps = 43/414 (10%)
Query: 23 QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQ 82
Q+ + GF S LI S ++ A +F + E D +N +I A
Sbjct: 968 QVLGHIIQYGFEDSVSVANSLISMFSSF--SSVEEACYVFDHMNECDIISWNAMISAYAH 1025
Query: 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFV 142
+++ + M + N T S +L C+ + G +HG +VK G + N +
Sbjct: 1026 HGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCI 1085
Query: 143 RNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG----------------- 185
N+L+ ++ G A ++F + D+++W+S+ A Y + G
Sbjct: 1086 CNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGK 1145
Query: 186 ---------------------ELSMARSLFDEMPVRD-LVSWNVMITGYAKQGEMEKANE 223
E + +L D L+ N ++T Y K G M +A +
Sbjct: 1146 VMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKK 1205
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+ +P+ D V+WNA+I G+ +A++ ++ +R G + +TM+S+L AC+ D
Sbjct: 1206 VLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDD 1265
Query: 284 -LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
L+ G +H ++ +T + N+LI MYAKCG + + +F G+ ++ TW+ ++
Sbjct: 1266 LLKHGMPIHAHIV-LTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMV 1324
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
A HG EE++ +F EM+ + V + +F G L A ++ +EEG++ L+
Sbjct: 1325 AANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLV 1378
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 181/378 (47%), Gaps = 41/378 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I +A +F ++ + ++T++ G + +AV L+ QM ++PN F + ++
Sbjct: 793 GNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLI 852
Query: 113 KACTRLLY-RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
AC+R Y + GF VHG +VK G + +V +L++F+ + G + A LF+ +V
Sbjct: 853 TACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNV 912
Query: 172 VAWSSLTAGYARRGELSMARSLFDEM---------------------------------- 197
V+W+SL GY+ G +++ M
Sbjct: 913 VSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGH 972
Query: 198 ----PVRDLVS-WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
D VS N +I+ ++ +E+A +F+ + + D++SWNAMIS Y G+ +++
Sbjct: 973 IIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRES 1032
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
L F MR + + T+ SLL+ C+ + +L+ G+ +H ++ + + V N L+
Sbjct: 1033 LRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLD-SNVCICNTLLT 1091
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
+Y++ G E A VF M +RD+ +W++++ G + + + E+ ++ +T
Sbjct: 1092 LYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVT 1151
Query: 373 FVGVLVACSHAGKVEEGK 390
F L ACS+ + E K
Sbjct: 1152 FASALAACSNPECLIESK 1169
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 99/176 (56%), Gaps = 2/176 (1%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N +I Y+K G +E A +F+E+ R+ SW+ M+SGYV G+ ++A+ +F +M +G
Sbjct: 783 NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 842
Query: 266 PDDVTMLSLLTACADLGDL-EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
P+ + SL+TAC+ G + + G +VH ++ T + V G AL+ Y G + A
Sbjct: 843 PNGFMVASLITACSRSGYMADEGFQVHGFVVK-TGILGDVYVGTALVHFYGSIGLVYNAQ 901
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
++F M D +V +W++L+ G + G E + +++ M++ V + TF V +C
Sbjct: 902 KLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC 957
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 131/325 (40%), Gaps = 46/325 (14%)
Query: 90 VFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF 149
VFL Q I+ +F LK + + + G +H + F N+LI
Sbjct: 730 VFLQQQHTDYGIRCLN-AVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINM 788
Query: 150 HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------P----- 198
++ G++ A +FD + +WS++ +GY R G A LF +M P
Sbjct: 789 YSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMV 848
Query: 199 -----------------------------VRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
+ D+ ++ Y G + A +LF E+P
Sbjct: 849 ASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 908
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
+VVSW +++ GY G + L +++ MR G + T ++ ++C L D +G +
Sbjct: 909 DHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQ 968
Query: 290 V--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
V H V+ N+LI M++ S+E A VF M + D+ +W+ +I A
Sbjct: 969 VLGHIIQYGFEDSVSVA---NSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAH 1025
Query: 348 HGFAEESIAMFREMQRLKVRPTEIT 372
HG ES+ F M+ L T
Sbjct: 1026 HGLCRESLRCFHWMRHLHNETNSTT 1050
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 287 GKKVH--CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
GK +H C + + G+ + N LI+MY+K G+IE A VF MR R+ ++WST++ G
Sbjct: 763 GKALHAFCIVGSVNLGIFQT---NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSG 819
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE-YNIE 403
G EE++ +F +M L V P ++ ACS +G M DE + +
Sbjct: 820 YVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSG----------YMADEGFQVH 869
Query: 404 PNIRHYGVHGDVELG 418
+ G+ GDV +G
Sbjct: 870 GFVVKTGILGDVYVG 884
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 169/546 (30%), Positives = 267/546 (48%), Gaps = 80/546 (14%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYA-HKMFVKI--- 65
R+ + C N+R LKQ + I+G L +LI S ++YA HK +++
Sbjct: 7 RILQHCKNIRELKQTHLQIFIHGLQHSDFMLPKLITVSSAF--NLLDYATHKEALRVYSR 64
Query: 66 -----TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL---KACTR 117
E ++F + +++ SQ D ++ ++ K + F + +L C+
Sbjct: 65 MKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSE 124
Query: 118 LL---YRNM----------------GFCVHGKIVK-YGF-----EFNRFVRNSLIYFHAN 152
L YR + G+I G E N NS++ +
Sbjct: 125 NLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSK 184
Query: 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY 212
G++ A +F+ + V+W+S+ +GY R G++ A+S+F +MP + +VSW MI+GY
Sbjct: 185 AGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGY 244
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTM 271
A G+++ A +FN +P ++VVSWNAMISGYV QAL +F M GE RPD T+
Sbjct: 245 ATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTL 304
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
+S+L+ACA LG LE GK ++ + ++ L GNALIDM+AKCG +E A EVF M
Sbjct: 305 ISILSACAHLGSLEHGKWINSYIKKNKLHLSIPL-GNALIDMFAKCGDVENAKEVFHHMS 363
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
R + TW+T++ GLA +G E+I +F +M +P ++ F+ VL AC+H G VEEGK+
Sbjct: 364 KRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKR 423
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
F M E+ I+P I HYG +H
Sbjct: 424 VFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIH 483
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
G+ +L + +++++ L+SN+ AS G W V R M ++K PGCS
Sbjct: 484 GNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSS 543
Query: 473 IEADDK 478
I+ ++
Sbjct: 544 IQVGNR 549
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 157/512 (30%), Positives = 257/512 (50%), Gaps = 89/512 (17%)
Query: 15 CTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKIT 66
C+ L+ LK QI L++ + ++ D ++ GS +I G + A ++F +
Sbjct: 166 CSRLKDLKLGAQIHGLISKSKYSLD-------VFMGSGLIDFYSKCGLVGCARRVFDGME 218
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
E + +N +I Q+ ++A+ + +M + KP++ T + V+ AC L G
Sbjct: 219 EKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQ 278
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H ++VK ++F RN LI G+A +D+ YA+ G
Sbjct: 279 IHARVVKS----DKF-RNDLIL----------------GNALVDM---------YAKCGR 308
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
++ AR +FD MPVR+ VS M++GYAK ++ A +F + ++D+VSWNA+I+GY
Sbjct: 309 VNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQN 368
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD-----MTSGV 301
G N++AL +F ++ P T +LL A A+L DLE+G++ H ++ +
Sbjct: 369 GENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEE 428
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ GN+LIDMY KCGS+E + VF M ++D +W+T+I G A +G+ E++ +F++M
Sbjct: 429 PDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKM 488
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
+P +T +G L ACSHAG VEEG++YF M E+ + P HY
Sbjct: 489 LESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGC 548
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
VH ++ LG+ +++ + SG YVLL+N+
Sbjct: 549 LEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANM 608
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
Y+ G W VRKLM + KQPGCS I+
Sbjct: 609 YSELGRWGDAVSVRKLMRRRGVVKQPGCSWID 640
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 140/282 (49%), Gaps = 32/282 (11%)
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
F+ +L C +L VHG++++ F F++N LI + CG L+
Sbjct: 27 FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLD---------- 76
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
AR +FD M R++ S+N +I+ + G ++++ LF+
Sbjct: 77 ---------------------YARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSL 115
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P++D SWN+MI+G+ ++AL+ F M +D + S L+AC+ L DL++G
Sbjct: 116 MPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLG 175
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
++H L+ + V G+ LID Y+KCG + A VF GM +++V +W+ LI
Sbjct: 176 AQIH-GLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQ 234
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+G A E++ F M L +P E+T V+ AC+ +EG
Sbjct: 235 NGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEG 276
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 163/556 (29%), Positives = 258/556 (46%), Gaps = 112/556 (20%)
Query: 18 LRTLKQIQALVTIN-GFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
++TL ++ + + IN D + +L+ + S G + A +F + E + +N +
Sbjct: 51 IKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSA--QGETSVARYIFDRSLEKNVVFFNVM 108
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
IR + ++A+ ++ M C+ P+ +TF VLKAC+ L +G VH IVK G
Sbjct: 109 IRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGL 168
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
+ N F+ N+L+ + CG L A R + D+
Sbjct: 169 DTNLFIGNALVAMYGKCGCLREA-------------------------------RKVLDQ 197
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANE--------------------------------- 223
MP RD+VSWN M+ GYA+ G+ + A E
Sbjct: 198 MPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQ 257
Query: 224 ----LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
+F + K++++SWN MI+ YV M +A+ +F +M G +PD VT+ SLL AC
Sbjct: 258 YIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACG 317
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
DL L +G+++H ++ + +L NAL+DMYAKCG +E A +VF MR RDV +W+
Sbjct: 318 DLSALFLGRRLH-KYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWT 376
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+++ G +++A+F +M P I FV VL ACSH G +++G+ YF++M ++
Sbjct: 377 SMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQ 436
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y I P I H+ VH +++G +
Sbjct: 437 YGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLV 496
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
A L + +SG YVLLSNIYA G W V VR M IKK PG S +E + +
Sbjct: 497 AADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVH 556
Query: 481 LQYLFNLKPKPNSGNL 496
+L + P + N+
Sbjct: 557 -TFLAGDQYHPQAKNI 571
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 162/512 (31%), Positives = 259/512 (50%), Gaps = 89/512 (17%)
Query: 15 CTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKIT 66
C L+ LK QI +LV + + SD +Y GS ++ G + YA +F ++T
Sbjct: 161 CAGLQDLKLGSQIHSLVYRSNYLSD-------VYMGSALVDMYSKCGRVEYAQSVFDEMT 213
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
+N++I Q+ +A+ ++ +M KC ++P++ T + V+ AC + G
Sbjct: 214 VRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQ 273
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H ++VK EF RN LI G+A +D+ YA+
Sbjct: 274 IHARVVKCD-EF----RNDLIL----------------GNALLDM---------YAKCNR 303
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
++ AR +FD MP+R +VS M++GYAK +++ A +F+ + +DV++WNA+I+G
Sbjct: 304 INEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQN 363
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD-----MTSGV 301
G N++AL +F ++ P T +LL ACA+L DL++G++ H +L
Sbjct: 364 GENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGED 423
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ V GN+LIDMY KCGS+E VF M ++D +W+ +I G A +GF +++ +F +M
Sbjct: 424 SDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKM 483
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
P +T +GVL ACSHAG ++EG+ YF+ M ++ + P HY
Sbjct: 484 LESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGY 543
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
VH +++LG K+LL + + SG YVLLSN+
Sbjct: 544 LEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNM 603
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
YA +W V +VRKLM + KQPGCS IE
Sbjct: 604 YAENRDWKNVVRVRKLMRQRGVVKQPGCSWIE 635
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 146/284 (51%), Gaps = 32/284 (11%)
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
FS +L C R VH I+K F F++N LI + CG ++
Sbjct: 22 FSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVD---------- 71
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
+AR LFD M R++ SWN +I + K G ++ A +F +
Sbjct: 72 ---------------------VARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEK 110
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P+ D SWN+MISG+ G +AL F +M G ++ + S L+ACA L DL++G
Sbjct: 111 MPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLG 170
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
++H +L+ ++ ++ V G+AL+DMY+KCG +E A VF M R +W++LI
Sbjct: 171 SQIH-SLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQ 229
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+G +E++ +F EM + V P E+T V+ AC+ ++EG++
Sbjct: 230 NGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQ 273
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 92/207 (44%), Gaps = 13/207 (6%)
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D LL CA +VH ++ + ++ N LID+Y KCG ++ A ++
Sbjct: 18 DSSPFSKLLNQCARSRSARDTSRVHACIIK-SPFASETFIQNRLIDVYGKCGCVDVARKL 76
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F M +R++ +W+++I GF ++++ +F +M ++ + ++ ++ G+
Sbjct: 77 FDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVD----QCSWNSMISGFEQHGRF 132
Query: 387 EEGKKYFKLMR------DEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440
+E YF M +EY+ + D++LG + L R + D + S
Sbjct: 133 DEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHS--LVYRSNYLSDVYMGS 190
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQ 467
+ + RVE + + D+ ++ +
Sbjct: 191 ALVDMYSKCGRVEYAQSVFDEMTVRSR 217
>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 157/479 (32%), Positives = 252/479 (52%), Gaps = 60/479 (12%)
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+ E + + ++I G +Q+ +A+ Y QM + + P++FTF ++KAC+ L +G
Sbjct: 1 MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H ++K F + +N+LI + + A +F A D+++W S+ AG+++
Sbjct: 61 RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 120
Query: 185 GELSMARSLFDEMPVR---DLVSWNVMITGYAKQGEMEKANELFNEV-PKRDVVSWNAMI 240
G A F EM + DLV+WN +I G+A GE+ A F E+ D+VSWNA++
Sbjct: 121 GYELEALCYFKEMLHQGRPDLVAWNAIIAGFA-YGELRDAIFFFEEMRCNADLVSWNAIL 179
Query: 241 SGYVLCGMNKQALEMFEEMRSV---GERPDDVTMLSLLTACADLGDLEVGKKVHC----T 293
+ C + QA E+F ++ + RPD +T+ ++L A A+ +E+G +VHC T
Sbjct: 180 TA---CMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKT 236
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
L+ + V N LID+YAKCGS++ A ++F M + DV +WS+LI G A G+ EE
Sbjct: 237 GLNCDTSVT-----NGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEE 291
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
++ +F+ M+RL V+P +TFVGVL ACSH G VEEG K + M E+ I P H
Sbjct: 292 ALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMV 351
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
HG+V++G+ A + +L + S
Sbjct: 352 DLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSA 411
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFN-LKPKPN 492
+VLL NIYAS+G W V ++R LM ++K PG S IE D+ + ++ + L P+ N
Sbjct: 412 AHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSLHPERN 470
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 8/173 (4%)
Query: 23 QIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
Q+ G N D+S LI Y+ G++ AHK+F + PD ++++I G
Sbjct: 228 QVHCYALKTGLNCDTSVTNGLIDLYAKC----GSLKTAHKIFDSMINPDVVSWSSLILGY 283
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK-YGFEFN 139
AQ +A+ L+ M + +KPN TF VL AC+ + G+ ++G + K +G
Sbjct: 284 AQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPT 343
Query: 140 RFVRNSLIYFHANCGDLNTASVLFDGDA-KMDVVAWSSLTAGYARRGELSMAR 191
R + ++ A G LN A A D+V W +L A G + + +
Sbjct: 344 REHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGK 396
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 165/536 (30%), Positives = 258/536 (48%), Gaps = 84/536 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
K+I L G NSD L+ V G ++ A + F I + D +YN +I A
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTM--CVRCGDVDSAKQAFKGIADRDVVVYNALIAALA 306
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
Q + ++A Y +M + N+ T+ +L AC+ G +H I + G +
Sbjct: 307 QHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQ 366
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM---- 197
+ N+LI +A CGDL A LF K D+++W+++ AGYARR + A L+ +M
Sbjct: 367 IGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG 426
Query: 198 --PVR----DLVS-----------------------------WNVMITGYAKQGEMEKAN 222
P R L+S N ++ Y + G + +A
Sbjct: 427 VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQ 486
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+F RDV+SWN+MI+G+ G + A ++F+EM++ PD++T S+L+ C +
Sbjct: 487 NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPE 546
Query: 283 DLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
LE+GK++H + + SG+ V GNALI+MY +CGS++ A VF ++ RDV +W+ +
Sbjct: 547 ALELGKQIHGRITE--SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAM 604
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
IGG A G ++I +F +MQ RP + TF +L AC+HAG V EG + F M EY
Sbjct: 605 IGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEY 664
Query: 401 NIEPNIRHYG---------------------------------------VHGDVELGRLA 421
+ P I HYG +HG++ L A
Sbjct: 665 GVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHA 724
Query: 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
L + Y+LLSN+YA+ G W+ V K+R++M+ I+K+PG S IE D+
Sbjct: 725 ANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 780
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/470 (27%), Positives = 219/470 (46%), Gaps = 59/470 (12%)
Query: 3 TNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAH 59
T+R L + CT R L K+I A + G D L L+ + V ++ AH
Sbjct: 25 TDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDI-FLSNLLINMYVKCRSVLD-AH 82
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
++F ++ D +N++I AQ A L+ +M+ PNK T+ +L AC
Sbjct: 83 QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
G +H +I+K G++ + V+NSL+ + CGDL A +F G + DVV+++++
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202
Query: 180 GYARRGELSMARSLFDEMPVR--------------------------------------- 200
YA++ + LF +M
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNS 262
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D+ ++T + G+++ A + F + RDVV +NA+I+ G N +A E + MR
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
S G + T LS+L AC+ LE GK +H + + + V GNALI MYA+CG +
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIH-SHISEDGHSSDVQIGNALISMYARCGDL 381
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+A E+F M RD+ +W+ +I G A E++ ++++MQ V+P +TF+ +L AC
Sbjct: 382 PKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSAC 441
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRK 430
+++ +GK I +I G+ + G LAN L+NM +
Sbjct: 442 ANSSAYADGKM----------IHEDILRSGIKSN---GHLANA-LMNMYR 477
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 174/390 (44%), Gaps = 46/390 (11%)
Query: 4 NRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
NR + C+ + L K I + ++ +G +SD LI + G + A +
Sbjct: 329 NRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC--GDLPKARE 386
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F + + D +N II G A+ ++ +A+ LY QM+ +KP + TF +L AC
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
G +H I++ G + N + N+L+ + CG L A +F+G DV++W+S+ AG
Sbjct: 447 YADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAG 506
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNV--------------------------------- 207
+A+ G A LF EM +L N+
Sbjct: 507 HAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLD 566
Query: 208 ------MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
+I Y + G ++ A +F+ + RDV+SW AMI G G + +A+E+F +M++
Sbjct: 567 VNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQN 626
Query: 262 VGERPDD-VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
G RP D T S+L+AC G + G ++ ++ + + H L+ + +
Sbjct: 627 EGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRF 686
Query: 321 ERAIEVFLGMR-DRDVSTWSTLIGGLAFHG 349
+ A + M D + W TL+G HG
Sbjct: 687 QEAETLINQMPFPPDAAVWETLLGACRIHG 716
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 174/533 (32%), Positives = 259/533 (48%), Gaps = 89/533 (16%)
Query: 24 IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQS 83
+ A V GF+SD+ LI SV G A ++F I D + ++ ++
Sbjct: 167 VHACVYKLGFDSDAFVGTALIDCYSVC--GYAECARQVFDAIEYKDMVSWTGMVACYVEN 224
Query: 84 QNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVR 143
+ +++ L+++M KPN FTF+ VLKAC L N+G VHG K + FV
Sbjct: 225 ECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVG 284
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA---------------RRG--- 185
LI + GD++ A +F+ K DV+ WS + A YA RRG
Sbjct: 285 VELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVL 344
Query: 186 --ELSMARSLFDEMPVRDL--------------VSWNVMITG-----YAKQGEMEKANEL 224
+ ++A L + DL + NV ++ YAK G ME + +L
Sbjct: 345 PNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQL 404
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F+E P VSWN +I GYV G ++AL +F++M + +VT S+L ACA + L
Sbjct: 405 FSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAAL 464
Query: 285 EVGKKVHC----TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
E G ++H T+ D + V GNALIDMYAKCG+I+ A VF +R+ D +W+
Sbjct: 465 EPGSQIHSLSVKTIYDKNTVV-----GNALIDMYAKCGNIKDARLVFDMLREHDQVSWNA 519
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
+I G + HG E++ F M + +P ++TFVG+L ACS+AG ++ G+ YFK M +EY
Sbjct: 520 MISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEY 579
Query: 401 NIEPNIRHYG---------------------------------------VHGDVELGRLA 421
+IEP HY +H DVELGR++
Sbjct: 580 DIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRIS 639
Query: 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+R+L + ++ +VLLSNIYA+ W V +R M I+K+PG S IE
Sbjct: 640 AQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIE 692
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 222/457 (48%), Gaps = 57/457 (12%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F ++ + +T + T+I+G +Q +A+ L+++++ + N F FS VLK
Sbjct: 98 AAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVS 157
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+ +GF VH + K GF+ + FV +LI ++ CG A +FD D+V+W+ +
Sbjct: 158 AEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGM 217
Query: 178 TAGYARRGELSMARSLFDEMPV-----------------RDLVSWNV------------- 207
A Y + LF M + L +NV
Sbjct: 218 VACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSY 277
Query: 208 ---------MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
+I Y K G+++ A ++F E+PK DV+ W+ MI+ Y +++A+EMF
Sbjct: 278 LEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCR 337
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVAKVLHGNALIDMY 314
MR P+ T+ SLL ACA L DL++G ++HC + LDM V NAL+DMY
Sbjct: 338 MRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMN-----VFVSNALMDMY 392
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
AKCG +E ++++F + +W+T+I G G E+++ +F++M +V+ TE+T+
Sbjct: 393 AKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYS 452
Query: 375 GVLVACSHAGKVEEGKKYFKL----MRDEYNIEPN--IRHYGVHGDVELGRLANKRLLNM 428
VL AC+ +E G + L + D+ + N I Y G+++ RL L
Sbjct: 453 SVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDML--- 509
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
R+ + + + + Y+ G + K + M +++ K
Sbjct: 510 REHDQVSWNAMISGYSVHGLYGEALKTFESMLETECK 546
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 158/341 (46%), Gaps = 42/341 (12%)
Query: 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150
FL + S + N + + +L++C R G +H +I+K G + F N L+ F+
Sbjct: 30 FLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFY 89
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP------------ 198
L A+ LFD + V++ +L GY++ S A LF +
Sbjct: 90 VKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFS 149
Query: 199 --VRDLVS--W-----------------------NVMITGYAKQGEMEKANELFNEVPKR 231
++ LVS W +I Y+ G E A ++F+ + +
Sbjct: 150 TVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYK 209
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
D+VSW M++ YV +++L++F MR VG +P++ T S+L AC L VGK VH
Sbjct: 210 DMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVH 269
Query: 292 -CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
C TS + ++ G LID+Y K G ++ A++VF M DV WS +I A
Sbjct: 270 GCAF--KTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQ 327
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+EE+I MF M+R V P + T +L AC+ ++ G +
Sbjct: 328 SEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQ 368
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 162/554 (29%), Positives = 263/554 (47%), Gaps = 92/554 (16%)
Query: 9 SRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSV----VIPGAINYAHKM 61
S L C +L L+ Q+ + + G +SD I GS+ V G + A +
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISSD------YIMEGSLLDLYVKCGDVETALVI 301
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
F + ++N ++ Q + + L+ QM+ I+PN+FT+ +L+ CT
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
++G +H VK GFE + +V LI ++ G L A + + + DVV+W+S+ AGY
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421
Query: 182 ARRGELSMARSLFDEMP---------------------------------------VRDL 202
+ A + F EM D+
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
WN ++ YA+ G + +A F E+ +D ++WN ++SG+ G++++AL++F M
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQS 541
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G + + T +S L+A A+L +++ GK++H ++ T + GNALI +Y KCGS E
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIK-TGHSFETEVGNALISLYGKCGSFED 600
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A F M +R+ +W+T+I + HG E++ +F +M++ ++P ++TF+GVL ACSH
Sbjct: 601 AKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSH 660
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
G VEEG YFK M DEY I P HY
Sbjct: 661 VGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWR 720
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
VH ++E+G A K LL + +S YVLLSN YA +W ++VRK+M D
Sbjct: 721 TLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRG 780
Query: 464 IKKQPGCSLIEADD 477
++K+PG S IE +
Sbjct: 781 VRKEPGRSWIEVKN 794
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 118/447 (26%), Positives = 209/447 (46%), Gaps = 58/447 (12%)
Query: 9 SRLWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHK 60
S + CT Q I A +GF S+ I+ G+ VI G+ A +
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSE-------IFVGNAVITLYLRCGSFRLAER 199
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F + DT +NT+I G AQ + A+ ++ +M+ + P+ T S +L AC L
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGD 259
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
G +H + K G + + SL+ + CGD+ TA V+F+ + +VV W+ +
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319
Query: 181 YARRGELSMARSLFDEMPV---------------------------------------RD 201
+ + +L+ + LF +M D
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESD 379
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
+ V+I Y+K G +EKA + + ++DVVSW +MI+GYV K AL F+EM+
Sbjct: 380 MYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK 439
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTL-LDMTSGVAKVLHGNALIDMYAKCGSI 320
G PD++ + S ++ CA + + G ++H + + SG + NAL+++YA+CG I
Sbjct: 440 CGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIW--NALVNLYARCGRI 497
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A F + +D TW+ L+ G A G EE++ +F M + V+ TFV L A
Sbjct: 498 REAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSAS 557
Query: 381 SHAGKVEEGKK-YFKLMRDEYNIEPNI 406
++ ++++GK+ + ++++ ++ E +
Sbjct: 558 ANLAEIKQGKQIHARVIKTGHSFETEV 584
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 185/405 (45%), Gaps = 52/405 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F +++ D + ++ G AQ+ +A+ LY QM + + P + S VL
Sbjct: 91 GLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVL 150
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+CT+ G +H + K+GF FV N++I + CG A +F D V
Sbjct: 151 SSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTV 210
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL------------------------------ 202
+++L +G+A+ G A +F+EM L
Sbjct: 211 TFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYL 270
Query: 203 ----VSWNVMITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
+S + ++ G Y K G++E A +FN + +VV WN M+ + ++
Sbjct: 271 FKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSF 330
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALID 312
E+F +M++ G RP+ T +L C ++++G+++H L + +G ++ LID
Sbjct: 331 ELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHS--LSVKTGFESDMYVSGVLID 388
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+K G +E+A V ++++DV +W+++I G H ++++A F+EMQ+ + P I
Sbjct: 389 MYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIG 448
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVEL 417
+ C AG MR I I G GDV +
Sbjct: 449 LASAISGC--AG--------INAMRQGLQIHARIYVSGYSGDVSI 483
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 162/351 (46%), Gaps = 50/351 (14%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H K V G R V N LI ++ G + A +F+ + D V+W ++ +GYA+ G
Sbjct: 64 IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123
Query: 187 LSMARSLFDEM------PVRDLVS---------------------------------WNV 207
A L+ +M P ++S N
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+IT Y + G A +F ++P RD V++N +ISG+ CG + ALE+FEEM+ G PD
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPD 243
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
VT+ SLL ACA LGDL+ G ++H L ++ G +L+D+Y KCG +E A+ +F
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEG-SLLDLYVKCGDVETALVIF 302
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
+V W+ ++ +S +F +MQ +RP + T+ +L C+ +++
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362
Query: 388 EGKKYFKLM------RDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDE 432
G++ L D Y I Y +G +E R R+L M K++
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR----RVLEMLKEK 409
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 275 LTACADLGD-LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
L AC G +V ++H + G +++ GN LID+Y+K G + A VF + R
Sbjct: 48 LRACRGNGRRWQVVPEIHAKAVTRGLGKYRIV-GNLLIDLYSKNGLVLPARRVFEELSAR 106
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
D +W ++ G A +G EE++ ++R+M R V PT VL +C+ A +G+
Sbjct: 107 DNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 239/461 (51%), Gaps = 76/461 (16%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A + F + E +N ++ G AQ+ + + L+ +M I+P++ T+ V+ AC+
Sbjct: 213 ARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSS 272
Query: 118 ----LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
L ++ +H K + + N FVR +L+ +A CG + A
Sbjct: 273 RGDPCLAASLVRTLHQKQI----QLNCFVRTALLDMYAKCGSIGAA-------------- 314
Query: 174 WSSLTAGYARRGELSMARSLFDEM-PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
R +FDE+ R+ V+WN MI+ Y + G ++ A ELFN +P R+
Sbjct: 315 -----------------RRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRN 357
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVH 291
VV+WN+MI+GY G + A+E+F+EM + + PD+VTM+S+++AC LG LE+G V
Sbjct: 358 VVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVV 417
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
L + ++ H NA+I MY++CGS+E A VF M RDV +++TLI G A HG
Sbjct: 418 RFLTENQIKLSISGH-NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHG 476
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD------------- 398
E+I + M+ + P +TF+GVL ACSHAG +EEG+K F+ ++D
Sbjct: 477 VEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLL 536
Query: 399 --------------EYNIEPNIRHYG-------VHGDVELGRLANKRLLNMRKDESGDYV 437
+EP+ YG +H VELG LA +L + D SG+++
Sbjct: 537 GRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFI 596
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
LLSNIYAS G W VE++R+ M +KK G S +E K
Sbjct: 597 LLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGK 637
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/416 (28%), Positives = 215/416 (51%), Gaps = 40/416 (9%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
N L+Q+ A + N + + + LI + + +Y H +F P+ F++ ++
Sbjct: 13 NFSHLRQLHAQIIHNSLHHHNYWVALLI-NHCTRLRAPPHYTHLLFNSTLNPNVFVFTSM 71
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
+R + Q+ V ++ M+ C ++P+ F + ++K+ N G H ++K G
Sbjct: 72 LRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAG-----NGGIGFHAHVLKLGH 126
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFD--GDAKMDVVAWSSLTAGYARRGELSMARSLF 194
+ FVRN++I +A G + A +FD D + V W+++ +GY + A+ LF
Sbjct: 127 GSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLF 186
Query: 195 DEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
D MP R++++W M+TGYAK ++E A F+ +P+R VVSWNAM+SGY G+ ++ L
Sbjct: 187 DVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLR 246
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGD---------------LEVGKKVHCTLLDMTS 299
+F+EM + G PD+ T +++++AC+ GD +++ V LLDM +
Sbjct: 247 LFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYA 306
Query: 300 GVAKV----------------LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIG 343
+ + NA+I Y + G+++ A E+F M R+V TW+++I
Sbjct: 307 KCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIA 366
Query: 344 GLAFHGFAEESIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
G A +G + +I +F+EM K+ P E+T V V+ AC H G +E G + + +
Sbjct: 367 GYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTE 422
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+R L + Q ++I+G N+ +I+ S G++ A ++F ++ D YNT+I
Sbjct: 417 VRFLTENQIKLSISGHNA-------MIFMYSRC--GSMEDAKRVFQEMATRDVVSYNTLI 467
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
G A + ++A+ L + M++ I+P++ TF VL AC+
Sbjct: 468 SGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSH 507
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 162/554 (29%), Positives = 263/554 (47%), Gaps = 92/554 (16%)
Query: 9 SRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSV----VIPGAINYAHKM 61
S L C +L L+ Q+ + + G +SD I GS+ V G + A +
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISSD------YIMEGSLLDLYVKCGDVETALVI 301
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121
F + ++N ++ Q + + L+ QM+ I+PN+FT+ +L+ CT
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
++G +H VK GFE + +V LI ++ G L A + + + DVV+W+S+ AGY
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421
Query: 182 ARRGELSMARSLFDEMP---------------------------------------VRDL 202
+ A + F EM D+
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
WN ++ YA+ G + +A F E+ +D ++WN ++SG+ G++++AL++F M
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQS 541
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G + + T +S L+A A+L +++ GK++H ++ T + GNALI +Y KCGS E
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIK-TGHSFETEVGNALISLYGKCGSFED 600
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A F M +R+ +W+T+I + HG E++ +F +M++ ++P ++TF+GVL ACSH
Sbjct: 601 AKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSH 660
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
G VEEG YFK M DEY I P HY
Sbjct: 661 VGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWR 720
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
VH ++E+G A K LL + +S YVLLSN YA +W ++VRK+M D
Sbjct: 721 TLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRG 780
Query: 464 IKKQPGCSLIEADD 477
++K+PG S IE +
Sbjct: 781 VRKEPGRSWIEVKN 794
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 118/447 (26%), Positives = 209/447 (46%), Gaps = 58/447 (12%)
Query: 9 SRLWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHK 60
S + CT Q I A +GF S+ I+ G+ VI G+ A +
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSE-------IFVGNAVITLYLRCGSFRLAER 199
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F + DT +NT+I G AQ + A+ ++ +M+ + P+ T S +L AC L
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGD 259
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
G +H + K G + + SL+ + CGD+ TA V+F+ + +VV W+ +
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319
Query: 181 YARRGELSMARSLFDEMPV---------------------------------------RD 201
+ + +L+ + LF +M D
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESD 379
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
+ V+I Y+K G +EKA + + ++DVVSW +MI+GYV K AL F+EM+
Sbjct: 380 MYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK 439
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTL-LDMTSGVAKVLHGNALIDMYAKCGSI 320
G PD++ + S ++ CA + + G ++H + + SG + NAL+++YA+CG I
Sbjct: 440 CGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIW--NALVNLYARCGRI 497
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A F + +D TW+ L+ G A G EE++ +F M + V+ TFV L A
Sbjct: 498 REAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSAS 557
Query: 381 SHAGKVEEGKK-YFKLMRDEYNIEPNI 406
++ ++++GK+ + ++++ ++ E +
Sbjct: 558 ANLAEIKQGKQIHARVIKTGHSFETEV 584
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 185/405 (45%), Gaps = 52/405 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F +++ D + ++ G AQ+ +A+ LY QM + + P + S VL
Sbjct: 91 GLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVL 150
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+CT+ G +H + K+GF FV N++I + CG A +F D V
Sbjct: 151 SSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTV 210
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL------------------------------ 202
+++L +G+A+ G A +F+EM L
Sbjct: 211 TFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYL 270
Query: 203 ----VSWNVMITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
+S + ++ G Y K G++E A +FN + +VV WN M+ + ++
Sbjct: 271 FKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSF 330
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALID 312
E+F +M++ G RP+ T +L C ++++G+++H L + +G ++ LID
Sbjct: 331 ELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHS--LSVKTGFESDMYVSGVLID 388
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+K G +E+A V ++++DV +W+++I G H ++++A F+EMQ+ + P I
Sbjct: 389 MYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIG 448
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVEL 417
+ C AG MR I I G GDV +
Sbjct: 449 LASAISGC--AG--------INAMRQGLQIHARIYVSGYSGDVSI 483
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 162/351 (46%), Gaps = 50/351 (14%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H K V G R V N LI ++ G + A +F+ + D V+W ++ +GYA+ G
Sbjct: 64 IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123
Query: 187 LSMARSLFDEM------PVRDLVS---------------------------------WNV 207
A L+ +M P ++S N
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+IT Y + G A +F ++P RD V++N +ISG+ CG + ALE+FEEM+ G PD
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPD 243
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
VT+ SLL ACA LGDL+ G ++H L ++ G +L+D+Y KCG +E A+ +F
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEG-SLLDLYVKCGDVETALVIF 302
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
+V W+ ++ +S +F +MQ +RP + T+ +L C+ +++
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362
Query: 388 EGKKYFKLM------RDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDE 432
G++ L D Y I Y +G +E R R+L M K++
Sbjct: 363 LGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR----RVLEMLKEK 409
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 275 LTACADLGD-LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
L AC G +V ++H + G +++ GN LID+Y+K G + A VF + R
Sbjct: 48 LRACRGNGRRWQVVPEIHAKAVTRGLGKYRIV-GNLLIDLYSKNGLVLPARRVFEELSAR 106
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
D +W ++ G A +G EE++ ++R+M R V PT VL +C+ A +G+
Sbjct: 107 DNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR 163
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 165/539 (30%), Positives = 260/539 (48%), Gaps = 93/539 (17%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+C+ L+Q+ A + G + + LI + + + YA +F P F+
Sbjct: 17 SRCSTRAHLEQLHAHAFVAGRAAAQTTTFHLIRFAAFRLS-CLTYARHLFDATPHPSVFL 75
Query: 73 YNTIIRGSAQSQNPLDAVF-----------LYTQMEKCS-IKPNKFTFSFVLKACTRLLY 120
Y+ I+ + + L+ +M + PN+F + VL+A + +
Sbjct: 76 YSAILSAYVSAAATASSYAHAHAHARDALALFLRMLRHGRPAPNQFVYPLVLRAASGV-- 133
Query: 121 RNMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
+G +H K GF + +R S++
Sbjct: 134 -GVGIVKSIHSHACKSGFCGHDIIRTSVL------------------------------- 161
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
GY+R G ++ AR LFD + R++VSW +++GYA+ G++ A LF +P+RDV +WNA
Sbjct: 162 DGYSRHGMMADARKLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNA 221
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
+I+G G+ +A+ +F M G RP+ T+ +L+AC LG L++GK +HC
Sbjct: 222 IIAGCSQNGLFVEAVGIFGRMVGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTC 281
Query: 299 SGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
G + VL N LIDMY KCG++E A +F + DR ++TW++LI LA HG ++ +I++
Sbjct: 282 VGFGSSVL--NGLIDMYGKCGNLEGARWIFDEVSDRSLTTWNSLINCLALHGHSKCAISV 339
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------- 410
F EM+ V P +TFVG+L AC+H G V+EG +YF+LM+ E+ IEP I HYG
Sbjct: 340 FNEMRGEGVEPDVVTFVGLLNACTHGGFVDEGIRYFELMQHEHGIEPEIEHYGCIIDLLG 399
Query: 411 --------------------------------VHGDVELGRLANKRLLNMRKDESGDYVL 438
VH VE LA ++LL + + + V+
Sbjct: 400 RAGRFQDALNVISDMRIEADEVMWGSLLNACRVHRQVEFAELAIRKLLELDPNNANYVVM 459
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDI-KKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
L+N+Y+ G W V KVRK + + +I KK PGCS IE D K Y + P S N+
Sbjct: 460 LANVYSEGGLWEEVRKVRKFVKEENIGKKLPGCSWIEVDRKTHRFYSGD-DAHPESENI 517
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 163/556 (29%), Positives = 252/556 (45%), Gaps = 111/556 (19%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
+L+TL+ + + + +SS +L+ + + + + A K+F +I E + + N +
Sbjct: 55 DLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASL--KDVATARKVFDEIPERNVIIINVM 112
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
IR + + + ++ M C +KP+ +TF VLKAC+ +G +HG K G
Sbjct: 113 IRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGL 172
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
FV N L+ + CG LS AR + DE
Sbjct: 173 SSTLFVGNGLVSMYGKCG-------------------------------FLSEARLVLDE 201
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANE--------------------------------- 223
M RD+VSWN ++ GYA+ + A E
Sbjct: 202 MSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVM 261
Query: 224 ----LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
+F ++ K+ +VSWN MI Y+ M +A+E++ M + G PD V++ S+L AC
Sbjct: 262 YVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACG 321
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
D L +GKK+H ++ + +L NALIDMYAKCG ++RA +VF M+ RDV +W+
Sbjct: 322 DTSALSLGKKIH-GYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWT 380
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+I F G +++A+F +MQ + P I FV L ACSHAG +EEG+ FKLM D
Sbjct: 381 AMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 440
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y I P + H VH + ++G L
Sbjct: 441 YKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLL 500
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
A +L + ++SG YVLLSNIYA G W V +R +M +KK PG S +E ++
Sbjct: 501 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEV-NRII 559
Query: 481 LQYLFNLKPKPNSGNL 496
+L + P S +
Sbjct: 560 HTFLVGDRSHPQSAEI 575
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 155/519 (29%), Positives = 253/519 (48%), Gaps = 82/519 (15%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSA-----LRELIYS-GSVVIPGA----I 55
H L ++C + L Q+ A G S ++ L +++Y+ ++ P + +
Sbjct: 28 HSIYTLIRQCKTINQLYQVHAQAFTKGLLSLTACSSPQILTKILYALTTIPTPKSSFSLL 87
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
+YA F I P TF YN IIR + L A+ + QM + S+ P+ ++ F LKAC
Sbjct: 88 HYAVSTFDNIQNPSTFCYNVIIRLHTLHSSALSALHFFLQMRRFSVPPDFHSYPFALKAC 147
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
L ++ C+H ++ K+GF + +V NSLI+ ++ LN A +FD + DVV+++
Sbjct: 148 AHLRVLSLAQCLHSQVFKFGFVSDLYVINSLIHVYSLFDCLNYACQVFDESSDRDVVSYN 207
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
+L G+ + GE AR +FD MP+RD VSW +I GYA QG
Sbjct: 208 ALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGYA-QGSY----------------- 249
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
C +A+ +F+ M + PD++ ++S L+ACA LG+LE GK++H +
Sbjct: 250 ----------C---NEAIGLFDLMMGLKLEPDNIALVSALSACAQLGELEKGKQIH-DYI 295
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
A L+D YAK G I+ AI+VF D+ + TW+ ++ G+A HG + +
Sbjct: 296 KKNRIQADSFLSTGLVDFYAKSGCIDTAIKVFELSPDKSLITWNAMLIGIAMHGNSHLLL 355
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
F M ++P I+F+GVLV CSH G V+E KK F M Y + ++HYG
Sbjct: 356 NYFSRMMEAGIKPDGISFLGVLVGCSHGGLVDEAKKLFDEMESIYGVRRELKHYGCMADL 415
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
+HG++E+ A K+++ ++ ++ G Y
Sbjct: 416 LARAGLIKEAVELTKGLPMGGDIFVWSGLLGGCRIHGNIEIAEQAAKQVMELKPEDGGVY 475
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDS-DIKKQPGCSLIE 474
+L+N+YA+ W V K+R+ M + +KK G S I+
Sbjct: 476 SILANVYANADRWEDVVKIRRSMSSNRAVKKNAGRSSIQ 514
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 230/464 (49%), Gaps = 69/464 (14%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
+N A ++F + E +N +I G +A+ L +M I+ + T++ ++ A
Sbjct: 239 LNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISA 298
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C + MG VH I+K N L H+ C ++ A
Sbjct: 299 CANVGSFQMGKQVHAYILK----------NELNPNHSFCLSVSNA--------------- 333
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
L Y + ++ AR +F MPVR++++WN +++GY G ME+A F E+P ++++
Sbjct: 334 --LITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLL 391
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
+ MISG G + L++F++MR G P D LTAC+ LG LE G+++H L
Sbjct: 392 TLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQL 451
Query: 295 LDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+ + G L GNA+I MYAKCG +E A VF+ M D+ +W+++I L HG +
Sbjct: 452 VHL--GYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVK 509
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
+I +F +M + V P ITF+ VL ACSHAG VE+G+ YF M + Y I P HY
Sbjct: 510 AIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMV 569
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
+HG+++LG A ++L + G
Sbjct: 570 DLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDG 629
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
YVLLSNIYA G WN V KVRKLM D ++K+P CS IE ++K
Sbjct: 630 TYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENK 673
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 176/365 (48%), Gaps = 71/365 (19%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D+ YN +I G A + + A+ L+ M + +P+ FTF+ VL A
Sbjct: 111 DSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVL----------- 159
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG-EL 187
FV N CG ++ A V+ G + ++L + Y +R EL
Sbjct: 160 ------------FVGNE-----QQCGQMHCA-VVKTGMGCVSSSVLNALLSVYVKRASEL 201
Query: 188 SM-------ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
+ AR LFDEMP RD ++W MITGY + ++ A E+F + + +WNAMI
Sbjct: 202 GISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMI 261
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL--DMT 298
SGYV CG ++AL + +MR +G + DD+T ++++ACA++G ++GK+VH +L ++
Sbjct: 262 SGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELN 321
Query: 299 SGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTW------------------- 338
+ L NALI +Y K ++ A ++F M R++ TW
Sbjct: 322 PNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSF 381
Query: 339 ------------STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
+ +I GLA +GF +E + +F++M+ P + F G L ACS G +
Sbjct: 382 FEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGAL 441
Query: 387 EEGKK 391
E G++
Sbjct: 442 ENGRQ 446
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 127/268 (47%), Gaps = 45/268 (16%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP--KRDVVSWNA 238
Y + L AR LF+E+P D ++ +IT Y G +E E+FN P RD V +NA
Sbjct: 58 YCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNA 117
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA-DLGDLEVGKKVHCTLLDM 297
MI+GY G ALE+F MR RPDD T S+L+A +G+ + ++HC ++
Sbjct: 118 MITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKT 177
Query: 298 TSGVAKVLHGNALIDMYAK--------CGSIERAIEVFLGMRDRDVSTWST--------- 340
G NAL+ +Y K C ++ A ++F M RD TW+T
Sbjct: 178 GMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRND 237
Query: 341 ----------------------LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
+I G G +E++ + R+M+ L ++ +IT+ ++
Sbjct: 238 DLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIIS 297
Query: 379 ACSHAGKVEEGKK-YFKLMRDEYNIEPN 405
AC++ G + GK+ + ++++E N PN
Sbjct: 298 ACANVGSFQMGKQVHAYILKNELN--PN 323
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 146/339 (43%), Gaps = 41/339 (12%)
Query: 26 ALVTINGFNSDSSALRELIYSGSV--------VIPGAINY-----AHKMFVKITEPDTFM 72
AL+T+ N+ R++ Y+ V ++ G +N A F ++ +
Sbjct: 333 ALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLT 392
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+I G AQ+ + + L+ QM +P F F+ L AC+ L G +H ++V
Sbjct: 393 LTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLV 452
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
G+E + V N++I +A CG + A +F +D+V+W+S+ A + G A
Sbjct: 453 HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIE 512
Query: 193 LFDEM----PVRDLVSWNVMITGYAKQGEMEKANELFNEV-------PKRDVVSWNAMIS 241
LFD+M D +++ ++T + G +EK FN + P D + M+
Sbjct: 513 LFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCED--HYARMVD 570
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
+ GM A + + M S +P +LL C G++++G ++ +
Sbjct: 571 LFCRAGMFSYARIVIDSMPS---KPGAPVWEALLAGCRIHGNMDLG-------IEAAEQL 620
Query: 302 AKVLHGN-----ALIDMYAKCGSIERAIEVFLGMRDRDV 335
K++ N L ++YA G +V MRD+ V
Sbjct: 621 FKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAV 659
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 207/370 (55%), Gaps = 45/370 (12%)
Query: 154 GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYA 213
GDLN++ F+ + V+W ++ G+AR G+++ AR LFD+MP+R++V+WN MI Y
Sbjct: 103 GDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYV 162
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
+ +++A LF E+P+++ +SW +I+GYV G +A ++ +M +PD T
Sbjct: 163 QNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQM-PYRNKPDQSTFAC 221
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRD 332
L++CA L L+VGK++H L M SG A L NALI MYAKCGSI A +F +
Sbjct: 222 GLSSCAHLAALQVGKQLH--QLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDH 279
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
DV +W++LI A +G E++ +F +M+ V P E+TFVG+L ACSH G +++G K
Sbjct: 280 FDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKL 339
Query: 393 FKLMRDEYNIEPNIRHYG---------------------------------------VHG 413
FK M YNIEP HY +HG
Sbjct: 340 FKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHG 399
Query: 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
++EL + A ++LL ++ +YVLLSN+ A G W+ V +VR+LM + +KQPG S I
Sbjct: 400 NLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWI 459
Query: 474 EADDK--AFL 481
E ++ AFL
Sbjct: 460 ELQNRVHAFL 469
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 135/279 (48%), Gaps = 43/279 (15%)
Query: 181 YARRGELSMARS--------------------------------LFDEMPVRDLVSWNVM 208
Y R GEL+ AR+ LFD MP +DLVSWN M
Sbjct: 5 YTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSM 64
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
+TGY + GEM + F E+ +RDVVSWN M+ G+V G + E FE++ P+
Sbjct: 65 LTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKI----PNPNT 120
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
V+ +++L A G + ++ L D + V+ NA+I Y + ++ AI +F+
Sbjct: 121 VSWVTMLCGFARFGKIAEARR----LFDQMP-IRNVVAWNAMIAAYVQNCHVDEAISLFM 175
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
M +++ +W+T+I G G +E+ + +M + +P + TF L +C+H ++
Sbjct: 176 EMPEKNSISWTTVINGYVRMGKLDEARQLLNQMP-YRNKPDQSTFACGLSSCAHLAALQV 234
Query: 389 GKKYFKL-MRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426
GK+ +L M+ Y + + + + + G +++ LL
Sbjct: 235 GKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELL 273
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 149/321 (46%), Gaps = 20/321 (6%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
++ A +F+++ E ++ + T+I G + +A L QM + KP++ TF+ L +
Sbjct: 167 VDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSS 225
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C L +G +H ++K G+ + FV N+LI +A CG +++A +LF DVV+W
Sbjct: 226 CAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSW 285
Query: 175 SSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEVPK 230
+SL A YA G A LF +M V D V++ +++ + G +++ +LF K
Sbjct: 286 NSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLF----K 341
Query: 231 RDVVSWN--AMISGYV----LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
V ++N + Y L G + E F+ +R + + +LL AC G+L
Sbjct: 342 CMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNL 401
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST---WSTL 341
E+ K LL+ K + L +M A+ G + V M+++ WS +
Sbjct: 402 ELAKFAAEKLLEFEPH--KTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWI 459
Query: 342 IGGLAFHGFAEESIAMFREMQ 362
H F E A R ++
Sbjct: 460 ELQNRVHAFLSEDPAHPRAVE 480
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 115/283 (40%), Gaps = 58/283 (20%)
Query: 208 MITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
MIT Y + GE+ KA LFN +P K + V NAM++GY N+Q F+E R
Sbjct: 1 MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGY---AKNRQ----FDEARR----- 48
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
L D K D+ S N+++ Y + G + ++
Sbjct: 49 --------------LFDAMPAK-------DLVSW-------NSMLTGYTRNGEMRLGLQF 80
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F M +RDV +W+ ++ G G S F ++ P +++V +L + GK+
Sbjct: 81 FEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP----NPNTVSWVTMLCGFARFGKI 136
Query: 387 EEGKKYFKLM--RDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
E ++ F M R+ I Y + V+ A + M + S + + N Y
Sbjct: 137 AEARRLFDQMPIRNVVAWNAMIAAYVQNCHVD---EAISLFMEMPEKNSISWTTVINGYV 193
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQP-----GCSLIEADDKAFLQ 482
G ++++ R+L++ + +P C L A LQ
Sbjct: 194 RMG---KLDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQ 233
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 15 CTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
C +L L KQ+ LV +G+ +D LI + G+I+ A +F I D
Sbjct: 226 CAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKC--GSISSAELLFKDIDHFDVV 283
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
+N++I A + N +A+ L+ +ME + P++ TF +L AC+ +
Sbjct: 284 SWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHV 330
>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 587
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 149/503 (29%), Positives = 243/503 (48%), Gaps = 83/503 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G +A ++F ++ E + ++ +I G Q+ P A+ LY+QM + PN++ F+ V+
Sbjct: 52 GHTTFARQVFDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVI 108
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L +G +H + +K+G+E FV NSLI + C + A +F + + V
Sbjct: 109 SACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCV 168
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVS---------------------------- 204
++++L G+ +L F M + L+
Sbjct: 169 SYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQT 228
Query: 205 -----------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
NV+IT Y++ +++A + F + ++DV+SWN +I+ C + + L
Sbjct: 229 VKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGL 288
Query: 254 EMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
+F+ M RPDD T S L ACA L + GK++H L+ T + GNAL++
Sbjct: 289 RVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMR-TRLYQDLGVGNALVN 347
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCG I A ++F M ++ +W+T+I G HG E ++ +F +M +RP +T
Sbjct: 348 MYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVT 407
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+G+L AC+HAG V++G+ YF M + Y I P+I H+
Sbjct: 408 FIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKF 467
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+HGDV +G K LL ++ + YVLLSN+YAS G W+ V
Sbjct: 468 PFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVA 527
Query: 454 KVRKLMDDSDIKKQPGCSLIEAD 476
+ RK + S +KK+PG SLIE +
Sbjct: 528 EARKRLKGSGLKKEPGHSLIEVN 550
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 156/329 (47%), Gaps = 39/329 (11%)
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
T S +L C++ G +H ++K G + + F+ N ++ +A CG A +FD
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPV--------------------------- 199
+ ++V+WS++ +GY + GE MA L+ +M +
Sbjct: 65 FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLVPNEYVFASVISACASLSAVTLGQKIH 124
Query: 200 -RDL------VSW--NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R L +S+ N +I+ Y K + A +F P+ + VS+NA+I+G+V +
Sbjct: 125 SRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLE 184
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ LE F+ MR G PD + +L C +L+ G ++HC + + + GN +
Sbjct: 185 RGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFI-GNVI 243
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPT 369
I MY++ I+ A + F + ++DV +W+TLI + + + +F+ M + VRP
Sbjct: 244 ITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPD 303
Query: 370 EITFVGVLVACSHAGKVEEGKK-YFKLMR 397
+ TF L AC+ + GK+ + LMR
Sbjct: 304 DFTFTSALAACAGLASMSHGKQIHAHLMR 332
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 151/479 (31%), Positives = 249/479 (51%), Gaps = 86/479 (17%)
Query: 37 SSALRE--LIYSGSVVIPGAINYA---HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVF 91
SS LR L YS + +P + + +K+ + + ++ + PL+A+
Sbjct: 407 SSGLRHQALSYSSTAPVPATARSSTPPSRTALKVFDQSPAPWRAFLKAYSHGPFPLEALH 466
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI--YF 149
L+ + + + F F+FVLKAC L + G +H +V+ GFEF+ +V +LI Y
Sbjct: 467 LFKHARQ-HLADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYV 525
Query: 150 HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMI 209
+ C L AR +FDEMPV+++VSWNVMI
Sbjct: 526 MSRC---------------------------------LVEARKVFDEMPVKNVVSWNVMI 552
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
TG+A GE+E A LF+++P R+VVSW +I GY + +AL + M + G P ++
Sbjct: 553 TGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEI 612
Query: 270 TMLSLLTACADLGDLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
T+L+++ A ++LG + +G+ + +C + S A+V GN+LID+YAK GS++ +++VF
Sbjct: 613 TVLAVIPAISNLGGILMGEMLNGYCEKKGIMSD-ARV--GNSLIDLYAKIGSVQNSLKVF 669
Query: 328 LGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
M D R++ +W+++I G A HG + E++ +F EM+R ++P ITF+ V+ ACSH G V
Sbjct: 670 DEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLV 729
Query: 387 EEGKKYFKLMRDEYNIEPNIRHYGV----------------------------------- 411
E+G +FK M EYNI+P I+H+G
Sbjct: 730 EQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLG 789
Query: 412 ----HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
+G+V +G A K + ++ ++ GD+ +LSN+ G ++ E+ RKL+D I K
Sbjct: 790 CCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVK 848
>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 149/503 (29%), Positives = 243/503 (48%), Gaps = 83/503 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G +A ++F ++ E + ++ +I G Q+ P A+ LY+QM + PN++ F+ V+
Sbjct: 52 GHTTFARQVFDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVI 108
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L +G +H + +K+G+E FV NSLI + C + A +F + + V
Sbjct: 109 SACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCV 168
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVS---------------------------- 204
++++L G+ +L F M + L+
Sbjct: 169 SYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQT 228
Query: 205 -----------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
NV+IT Y++ +++A + F + ++DV+SWN +I+ C + + L
Sbjct: 229 VKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGL 288
Query: 254 EMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
+F+ M RPDD T S L ACA L + GK++H L+ T + GNAL++
Sbjct: 289 RVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMR-TRLYQDLGVGNALVN 347
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCG I A ++F M ++ +W+T+I G HG E ++ +F +M +RP +T
Sbjct: 348 MYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVT 407
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
F+G+L AC+HAG V++G+ YF M + Y I P+I H+
Sbjct: 408 FIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKF 467
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+HGDV +G K LL ++ + YVLLSN+YAS G W+ V
Sbjct: 468 PFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVA 527
Query: 454 KVRKLMDDSDIKKQPGCSLIEAD 476
+ RK + S +KK+PG SLIE +
Sbjct: 528 EARKRLKGSGLKKEPGHSLIEVN 550
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 156/329 (47%), Gaps = 39/329 (11%)
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
T S +L C++ G +H ++K G + + F+ N ++ +A CG A +FD
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPV--------------------------- 199
+ ++V+WS++ +GY + GE MA L+ +M +
Sbjct: 65 FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLVPNEYVFASVISACASLSAVTLGQKIH 124
Query: 200 -RDL------VSW--NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R L +S+ N +I+ Y K + A +F P+ + VS+NA+I+G+V +
Sbjct: 125 SRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLE 184
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ LE F+ MR G PD + +L C +L+ G ++HC + + + GN +
Sbjct: 185 RGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFI-GNVI 243
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPT 369
I MY++ I+ A + F + ++DV +W+TLI + + + +F+ M + VRP
Sbjct: 244 ITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPD 303
Query: 370 EITFVGVLVACSHAGKVEEGKK-YFKLMR 397
+ TF L AC+ + GK+ + LMR
Sbjct: 304 DFTFTSALAACAGLASMSHGKQIHAHLMR 332
>gi|354805201|gb|AER41619.1| CRR4 [Oryza glumipatula]
Length = 745
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 154/449 (34%), Positives = 231/449 (51%), Gaps = 84/449 (18%)
Query: 101 IKPNKFTFSFVLKACTRL-LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC------ 153
+ PN FTF+F+L+AC L L R G CVHG+IV+ GF + FV+N+L+ + C
Sbjct: 107 VPPNGFTFTFLLRACALLGLPRPCG-CVHGQIVRCGFGSDVFVQNALVDVYHRCGGGGGV 165
Query: 154 ----------------------------GDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
GD A F+ + +VV+W+++ AG+AR G
Sbjct: 166 GAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMG 225
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA------------------------ 221
++ AR++FD MP R+ VSWN+MI+GYA G++E A
Sbjct: 226 DMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAK 285
Query: 222 -------NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLS 273
NELF+ +P +++VSWNAMI+GY +AL F+ M G RPD+ T++S
Sbjct: 286 IGDLDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVS 345
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGNALIDMYAKCGSIERAIEVFLG 329
+++ACA LG +E +C + G + V GNALIDM+AKCG + RA +F
Sbjct: 346 VVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYK 400
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M R + TW+T+I G AF+ +++ ++ M R V+ + F+ L AC+H G ++EG
Sbjct: 401 METRCIITWTTMISGFAFN---RDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEG 457
Query: 390 KKYFKLMRDEYNIEPNIRHYG----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
F M + YNI+P + HYG + G EL +K++ + S VL+SN A
Sbjct: 458 WSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITELEPFNSSYQVLVSNCSAL 517
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
G W+ V R M + I+K PG S I+
Sbjct: 518 EGRWDGVIDARTSMRNWGIEKVPGSSSIQ 546
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 16/208 (7%)
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G P+ T LL ACA LG VH ++ G + V NAL+D+Y +CG
Sbjct: 106 GVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFG-SDVFVQNALVDVYHRCGGGGG 164
Query: 323 ---AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
A +VF M DRDV +W++++G G A ++ F M V +++ V+
Sbjct: 165 VGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNV----VSWNTVVAG 220
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGRLANKRLLNMRKDESGDYV 437
+ G + + F M + N I Y GDVE R R M + + +
Sbjct: 221 FARMGDMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR---MDQKDVVSWT 277
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIK 465
+ + YA G+ ++ +L D +K
Sbjct: 278 AMVSAYAKIGD---LDTTNELFDHMPVK 302
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 148/429 (34%), Positives = 219/429 (51%), Gaps = 83/429 (19%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHA--NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H +++ G E N FV +I F A CG ++ A +F D W+++ G R
Sbjct: 70 LHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVFGKIENPDGFLWNTMIRGLGRT 129
Query: 185 GELSMARSLFDEMPVR---------------------DLVS------------------W 205
+ A + M V+ DL+
Sbjct: 130 RQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVR 189
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N ++ Y ++E A LF E+PK +V+WN +I V CG K+A+E+F M G +
Sbjct: 190 NTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLK 249
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PDD T + L+ACA LG+L++G++VH + +D T V N+LIDMYAKCG +E A E
Sbjct: 250 PDDATFVVTLSACAALGELDIGRRVH-SCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYE 308
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV-RPTEITFVGVLVACSHAG 384
+F M+ R++ +W+T+I GLA HG +E++ +F +M K+ P E+TF+GVL ACSH G
Sbjct: 309 IFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGG 368
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------------- 410
VEEG++YF +MR +YNI+P I+HYG
Sbjct: 369 MVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTL 428
Query: 411 -----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
VHG++EL + LL + D S DYVLL+N+YAS G+WN+V +VRK M ++
Sbjct: 429 LAACRVHGNLELAEQVRQXLLELEPDHSSDYVLLANMYASAGQWNKVXRVRKSMHIRGVQ 488
Query: 466 K-QPGCSLI 473
K +PG S I
Sbjct: 489 KPKPGNSYI 497
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/391 (27%), Positives = 194/391 (49%), Gaps = 41/391 (10%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
+ R ++K+C +++ L+Q+ A V G + + ++I +V G+++YA ++F
Sbjct: 49 SREERVMSVFKQCESMKHLEQLHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVF 108
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
KI PD F++NT+IRG +++ P A Y +M+ + FT+SF++K C +L
Sbjct: 109 GKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDL 168
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT---- 178
+G +H ++K+G E + FVRN+L++ + D+ A+ LF+ K +VAW+++
Sbjct: 169 LGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNV 228
Query: 179 -------------------------------AGYARRGELSMAR---SLFDEMPVRDLVS 204
+ A GEL + R S D + ++VS
Sbjct: 229 YCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVS 288
Query: 205 W-NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM-RSV 262
N +I YAK G +E A E+FN++ R++VSWN MI G + G +ALE+F +M
Sbjct: 289 VSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEK 348
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
P++VT L +L AC+ G +E G++ + + + H +++D+ + G +E
Sbjct: 349 LATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEE 408
Query: 323 AIEVFLGMR-DRDVSTWSTLIGGLAFHGFAE 352
A + M + + W TL+ HG E
Sbjct: 409 AYRLIKSMPIESNSIVWRTLLAACRVHGNLE 439
>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 548
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 154/510 (30%), Positives = 260/510 (50%), Gaps = 50/510 (9%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF--VKITEP 68
L ++ + +Q+ A + + G + A LI S S + YA +F V
Sbjct: 14 LAQRALSPAAARQLHAQLLLRGLPLPARAAVTLIASSS-----SPQYARAIFDSVPAASA 68
Query: 69 DTFMYNTIIRGSAQSQNPL---DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+ +++ + A+ +P +A L+ M + +PN FT S VLK+ ++L +
Sbjct: 69 NVYLWTATVSSYAKHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAHQVC 128
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
VHG +VK G + V +L+ + N + A +FD + +VV +++ +GY + G
Sbjct: 129 QVHGFLVKAGLASSLHVGATLLDSYGNLCRVKDARRVFDEMPRSNVVVGNAMVSGYVKAG 188
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
++ AR +FD M RD +SWN +++GY ++G+ A +LF+E+P+R+V SWN MIS
Sbjct: 189 DVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNVNSWNMMISACSE 248
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
G+ ++ +F +MR + RPD TM L++ACA LG L V ++V+ L + +
Sbjct: 249 VGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQVYGLLRKGCVEMNCHV 308
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
H N+L+DM+AKCG A +F M +DV +++ ++ LA HG ++++ +F +M
Sbjct: 309 H-NSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGG 367
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------- 411
++P +TF+GVL AC+HAG V+ GK YF+ M Y IE + HY
Sbjct: 368 LQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYACMVDLYGRVGLIEEA 427
Query: 412 -------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
H ++++G +A + L+ + G+YVLLSN A
Sbjct: 428 HYFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVAARELIRIEPMNPGNYVLLSNTLAWS 487
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+W+ V VR+LM + I K G S +E +
Sbjct: 488 QQWDAVGDVRQLMRGNGIDKNTGFSWVEVE 517
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 169/562 (30%), Positives = 266/562 (47%), Gaps = 88/562 (15%)
Query: 16 TNLRTLKQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
L+ K+ A V GF SD +AL + G G+++ A ++F + + D
Sbjct: 176 AGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKG-----GSMDGARQVFDGLYKRDVST 230
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I G A+S + A L+ +M++ KPN+ +F +L C+ G VH + +
Sbjct: 231 FNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCM 290
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
G + V +LI + CG + A +FD DVV+W+ + GYA + A
Sbjct: 291 NTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFG 350
Query: 193 LFDEM------PVR---------------------------------DLVSWNVMITGYA 213
LF M P R DL+ ++ YA
Sbjct: 351 LFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYA 410
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
K G ++ A ++F+ + +RDVVSW+AMI YV G ++A E F M+ PD VT ++
Sbjct: 411 KCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYIN 470
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
LL AC LG L++G +++ + V+ + GNALI+M K GSIERA +F M R
Sbjct: 471 LLNACGHLGALDLGMEIYTQAIK-ADLVSHIPVGNALINMNVKHGSIERARYIFENMVQR 529
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
DV TW+ +IGG + HG A E++ +F M + + RP +TFVGVL ACS AG VEEG+++F
Sbjct: 530 DVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFF 589
Query: 394 KLMRDEYNIEPNIRHYG---------------------------------------VHGD 414
+ D I P + YG ++G+
Sbjct: 590 SYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGN 649
Query: 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+++ A +R L + YV LS++YA+ G W V KVRK+M+ ++K+ GC+ IE
Sbjct: 650 LDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIE 709
Query: 475 ADDKAFLQYLFNLKPKPNSGNL 496
+ K ++ + P +G +
Sbjct: 710 VEGK-LHTFVVEDRSHPQAGEI 730
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 124/435 (28%), Positives = 204/435 (46%), Gaps = 45/435 (10%)
Query: 1 NRTNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINY 57
N + +L+++C LR KQ++ + +G + L LI S I G +
Sbjct: 57 NHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHS--ICGNMLE 114
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A + F + +N II G AQ + +A L+ QM +++P+ TF VL AC+
Sbjct: 115 ARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSS 174
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+G H +++K GF + + +L+ + G ++ A +FDG K DV ++ +
Sbjct: 175 PAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVM 234
Query: 178 TAGYARRGELSMARSLFDEM------PVR-------------DLVSW------------- 205
GYA+ G+ A LF M P R + ++W
Sbjct: 235 IGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGL 294
Query: 206 -------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
+I Y G +E A +F+++ RDVVSW MI GY + A +F
Sbjct: 295 VDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFAT 354
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M+ G +PD +T + ++ ACA DL + +++H ++ G +L AL+ MYAKCG
Sbjct: 355 MQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGT-DLLVDTALVHMYAKCG 413
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
+I+ A +VF M RDV +WS +IG +G EE+ F M+R V P +T++ +L
Sbjct: 414 AIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLN 473
Query: 379 ACSHAGKVEEGKKYF 393
AC H G ++ G + +
Sbjct: 474 ACGHLGALDLGMEIY 488
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 149/468 (31%), Positives = 230/468 (49%), Gaps = 76/468 (16%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQS----QNPLDAVF-LYTQMEKCSIKPNKFTFS 109
I A + F ++++ D ++ +I G AQS + LD VF L +M + + PNK TF
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFM 390
Query: 110 FVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
+LKAC+ G +H +I K GFE +R ++ ++ +A CG + A +F
Sbjct: 391 SILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK 450
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
+VVAW+SL Y + G+L+ A +F EM R++VSWN+MI GYA+ G++ K
Sbjct: 451 NVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAK--------- 501
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
E+ M+ G +PD VT++S+L AC L LE GK
Sbjct: 502 ----------------------VFELLSSMKVEGFQPDRVTIISILEACGALSALERGKL 539
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
VH + + V+ +LI MY+KCG + A VF + +RD W+ ++ G HG
Sbjct: 540 VHAEAVKLGLESDTVV-ATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHG 598
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
E++ +F+ M + +V P EITF V+ AC AG V+EG++ F++M++++ ++P +HY
Sbjct: 599 IGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHY 658
Query: 410 GV---------------------------------------HGDVELGRLANKRLLNMRK 430
G H +V+L A +L +
Sbjct: 659 GCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEP 718
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ YV LSNIYA G W+ KVRK+MDD +KK G S IE D +
Sbjct: 719 SNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGR 766
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/427 (25%), Positives = 193/427 (45%), Gaps = 81/427 (18%)
Query: 44 IYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98
IY G+ +I G + ++F ++T D ++++I A + +P A + +M+
Sbjct: 113 IYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172
Query: 99 CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158
+I+PN+ TF +LKAC +H + G E + V +LI ++ CG+++
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISL 232
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------P-------------- 198
A +F + +VV+W+++ A+ +L+ A L+++M P
Sbjct: 233 ACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292
Query: 199 -------------------VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
D+V N +IT Y K ++ A E F+ + KRDV+SW+AM
Sbjct: 293 PEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAM 352
Query: 240 ISGYVLCG-MNKQAL----EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
I+GY G +K++L ++ E MR G P+ VT +S+L AC+ G LE G+++H +
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI 412
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL------------- 341
+ + L A+ +MYAKCGSI A +VF M +++V W++L
Sbjct: 413 SKVGFESDRSLQ-TAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSA 471
Query: 342 ------------------IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
I G A G + + M+ +P +T + +L AC
Sbjct: 472 EKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGAL 531
Query: 384 GKVEEGK 390
+E GK
Sbjct: 532 SALERGK 538
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 166/349 (47%), Gaps = 47/349 (13%)
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147
+A+ L +++ + N T+ +++ C +L G VH ++ + G + ++ NSLI
Sbjct: 61 EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLI 120
Query: 148 YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------PVR- 200
F++ GD+ + +F DVV WSS+ A YA + A F+ M P R
Sbjct: 121 NFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRI 180
Query: 201 --------------------------------DLVSWNVMITGYAKQGEMEKANELFNEV 228
D+ +IT Y+K GE+ A E+F ++
Sbjct: 181 TFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKM 240
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
+R+VVSW A+I +A E++E+M G P+ VT +SLL +C L G+
Sbjct: 241 KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGR 300
Query: 289 KVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
++H + + G+ V+ NALI MY KC I+ A E F M RDV +WS +I G A
Sbjct: 301 RIHSHISE--RGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQ 358
Query: 348 HGFA-----EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
G+ +E + M+R V P ++TF+ +L ACS G +E+G++
Sbjct: 359 SGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQ 407
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 12/228 (5%)
Query: 189 MARSLFDEMPVR-DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
M DE+ + D+ N +I Y+K G++ ++F + RDVV+W++MI+ Y
Sbjct: 99 MVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNN 158
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+A + FE M+ P+ +T LS+L AC + LE +++H T++ + V
Sbjct: 159 HPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIH-TVVKASGMETDVAVA 217
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
ALI MY+KCG I A E+F M++R+V +W+ +I A H E+ ++ +M + +
Sbjct: 218 TALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGIS 277
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV 415
P +TFV +L +C+ + G++ I +I G+ DV
Sbjct: 278 PNAVTFVSLLNSCNTPEALNRGRR----------IHSHISERGLETDV 315
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 245 LC--GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
LC G K+A+++ ++ G + T ++ CA L E GK VH L ++ +
Sbjct: 53 LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAID 112
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L GN+LI+ Y+K G + +VF M RDV TWS++I A + ++ F M+
Sbjct: 113 IYL-GNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMK 171
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
+ P ITF+ +L AC++ +E+ ++ +++
Sbjct: 172 DANIEPNRITFLSILKACNNYSMLEKAREIHTVVK 206
>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g37570
gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 550
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 158/534 (29%), Positives = 262/534 (49%), Gaps = 72/534 (13%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L+K C + L QI A + G D + L + S S +++Y+ +F ++ P T
Sbjct: 16 LFKLCKSEIHLNQIHARIIRKGLEQDQN-LISIFISSSSSSSSSLSYSSSVFERVPSPGT 74
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI-KPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+++N +I+G + + V + +M + + +P+++TF V+K C+ +G VHG
Sbjct: 75 YLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSVHG 134
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+++ GF+ + V S + F+ C DL +A +F + + V+W++L Y + GEL
Sbjct: 135 LVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEE 194
Query: 190 ARS-------------------------------LFDEMPVRDLVSWNVMITGYAKQGEM 218
A+S LFDEMP RD++S+ MI GYAK G+M
Sbjct: 195 AKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDM 254
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
A +LF E DV +W+A+I GY G +A ++F EM + +PD+ M+ L++AC
Sbjct: 255 VSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSAC 314
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
+ +G E+ +KV L + + ALIDM AKCG ++RA ++F M RD+ ++
Sbjct: 315 SQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSY 374
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+++ G+A HG E+I +F +M + P E+ F +L C + VEEG +YF+LMR
Sbjct: 375 CSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRK 434
Query: 399 EYNIEPNIRHY---------------------------------------GVHGDVELGR 419
+Y+I + HY +HG+ E+
Sbjct: 435 KYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAE 494
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ + L + +G YVLLSNIYA+ W V +R M+++ I K G S I
Sbjct: 495 VVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRSWI 548
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 156/492 (31%), Positives = 233/492 (47%), Gaps = 101/492 (20%)
Query: 85 NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRN 144
+P A+ YT M K I+ + F VLKAC+++ MG +HG VK G + FV N
Sbjct: 89 HPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVN 148
Query: 145 SLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT----------------------AGYA 182
+L+ ++ CG L +A +LFD ++ DVV+WS++ AGY
Sbjct: 149 ALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYI 208
Query: 183 RRGELSMARSLFDEMPVRDLVSWNV----------------------------------- 207
R +L LF M ++ ++
Sbjct: 209 RCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLA 268
Query: 208 ----MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
++ Y K GE+ A +F+ + +DV++W AMIS Y A ++F +MR G
Sbjct: 269 LATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNG 328
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
RP+++TM+SLL+ CA G L++GK H +D V+ ALIDMYAKCG I A
Sbjct: 329 VRPNELTMVSLLSLCAVNGALDMGKWFH-AYIDKQGVEVDVILKTALIDMYAKCGDISGA 387
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+F DRD+ TW+ ++ G HG+ E+++ +F EM+ L V+P +ITF+G L ACSHA
Sbjct: 388 QRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHA 447
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G V EGK F+ M ++ + P + HYG
Sbjct: 448 GLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
+H + +G LA + LL + G VL+SNIYA+ WN V +RK + D+ I
Sbjct: 508 MLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGI 567
Query: 465 KKQPGCSLIEAD 476
KK+PG S IE +
Sbjct: 568 KKEPGMSSIEVN 579
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 117/282 (41%), Gaps = 29/282 (10%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
K++ A + NGF + L+ Y G I A +F + D + +I
Sbjct: 252 KRLHAYILRNGFGMSLALATALVDMYGKC----GEIRSARAIFDSMKNKDVMTWTAMISA 307
Query: 80 SAQSQNPLDAVF-LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEF 138
AQ+ N +D F L+ QM ++PN+ T +L C +MG H I K G E
Sbjct: 308 YAQA-NCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEV 366
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
+ ++ +LI +A CGD++ A LF D+ W+ + AGY G A LF EM
Sbjct: 367 DVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEME 426
Query: 199 VRDLVSWNVMITGYAK-----------QGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
+ ++ G +G EK F VPK V + M+ G
Sbjct: 427 TLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPK--VEHYGCMVDLLGRAG 484
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTAC-----ADLGDL 284
+ +A +M E M P+ ++L AC +++G+L
Sbjct: 485 LLDEAYKMIESMPVT---PNIAIWGAMLAACKIHKNSNMGEL 523
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 231/419 (55%), Gaps = 37/419 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L C L L QIQ+ + +G + ++I S ++ + +AHK+F +I EP+
Sbjct: 72 LLYSCKTLNHLHQIQSHIINHGLQFNDYITPKIITSFALF--KRMRHAHKLFDQIPEPNV 129
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+N +++G + + + + + L+ +M I PN F+F V+K+ ++ G +H
Sbjct: 130 SNWNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVKINAFKEGEELHCF 189
Query: 131 IVKYGFEFNRFVRNSLIYFHAN-------------------------------CGDLNTA 159
++K G N FV LI +++ C D+ TA
Sbjct: 190 VIKSGCRANPFVGTMLIDLYSSGRMIVSAYRVFGEMIERNVVAWTSMIKGFILCNDIETA 249
Query: 160 SVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
LF+ + DVV W+ + +GY G+L A+ LF +MP +D++SWN ++ GYA G++E
Sbjct: 250 RRLFELAPQRDVVLWNIMISGYIDIGDLVRAQELFHKMPNKDVMSWNTLLNGYANGGDIE 309
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVTMLSLLTAC 278
LF E+P+R+V SWN +I GY G + L F+ M G P+D T++++L+AC
Sbjct: 310 ACERLFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDATLVTVLSAC 369
Query: 279 ADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
A LG L++GK VH + ++G V GNALIDMYAKCG++E AI VF + +D+ +
Sbjct: 370 ARLGALDLGKWVH--MYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKSLDKKDLIS 427
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
W+TLIGGLA HG A +++ +F M+ +P ITF+GVL AC+H G V++G YF+ M
Sbjct: 428 WNTLIGGLAVHGRAADALYLFSRMKDAGEKPDGITFLGVLCACTHMGLVDDGFSYFQSM 486
>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Brachypodium distachyon]
Length = 652
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 150/482 (31%), Positives = 242/482 (50%), Gaps = 77/482 (15%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS----IKPNKFTFSFVL 112
YA +F ++ PD F+ ++R + +Q PL L++++ + + + F FS +
Sbjct: 93 YALSVFAALSPPDPFLAAALLRFALLTQPPLSPFHLFSRILRTARGGELPFLPFAFSPLA 152
Query: 113 KACTRLLYRNMGFCVHG-KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
K+ H + GF+ +RFV NSLI + CGD+ A
Sbjct: 153 KSAAAARSLPAAQAAHAVSFLVGGFDKHRFVENSLIGAYIACGDVGAA------------ 200
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
R +FDEM V+D++ W ++ Y++ +M A E+F + P +
Sbjct: 201 -------------------RKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVK 241
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
D+V+W AM++GY M +ALE+F+ M ++G D+V++ ++ACA LG ++ V
Sbjct: 242 DMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQ 301
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ +M V+ G+ L+DMYAKCG I+ A +VF GM++++V T+S+++ GLA HG A
Sbjct: 302 -EIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRA 360
Query: 352 EESIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
E+IA+F++M +R V P +TF+GVL ACSHAG V +G+ YF M+D+Y I P+ HY
Sbjct: 361 REAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYT 420
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
+HG E+ ++A + L + +
Sbjct: 421 CMVDLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLFKLEPE 480
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKP 491
G+YVLLSN A+ G+W+ V KVRK+M +KK P S E D Q+ P
Sbjct: 481 GIGNYVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAGDNSHP 540
Query: 492 NS 493
+
Sbjct: 541 RT 542
>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 152/501 (30%), Positives = 250/501 (49%), Gaps = 85/501 (16%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACT 116
A K+F + PDT ++NT++ G S+ A+ + +M + ++P+ T + L+A
Sbjct: 168 ARKVFDTVPSPDTILWNTLLAGLPGSE----ALEAFVRMVDAGRVRPDSTTLASSLRAAA 223
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
+ MG CVHG VK G + V L+ ++ CGD+++A LFD D+VA+++
Sbjct: 224 EASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNA 283
Query: 177 LTAGYARRGELSMARSLFDEM----------------PV--------------------- 199
L +GY+ G + + LF E+ PV
Sbjct: 284 LISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKAR 343
Query: 200 --RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
D + + T Y + +ME A +F+ + ++ + SWNAMISGY G+ + A+ +F+
Sbjct: 344 LDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQ 403
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
M+ + +P+ +T+ S L+ACA LG L +GK VH ++ V ALIDMYAKC
Sbjct: 404 LMQELNVQPNPITISSTLSACAHLGALSLGKWVH-RIISKEKLELNVYVMTALIDMYAKC 462
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
GSI A +F M +++V +W+ +I G HG E++ ++++M ++ PT TF+ V+
Sbjct: 463 GSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVI 522
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRH----------------------------- 408
ACSH G V+EG+K F++M +EY I P I H
Sbjct: 523 YACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAI 582
Query: 409 ----YG-------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
+G VH + +L +LA+++L + + +G YVLLSN+Y S+ ++ VR+
Sbjct: 583 GPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQ 642
Query: 458 LMDDSDIKKQPGCSLIEADDK 478
+ K PGC+LIE D+
Sbjct: 643 EAKTRKLVKTPGCTLIEIGDR 663
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 197/442 (44%), Gaps = 62/442 (14%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNS--DSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
RL + R L Q+ A+ +G + + A L+ S+ P ++ ++F
Sbjct: 25 RLVALSSTPRHLDQLLAVSLASGHYALDPAPATALLLRYASLRAPP--SHLLRLFRAFPC 82
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN----- 122
PD F+ N ++R S L L+ P+ F+F+F + +
Sbjct: 83 PDRFLRNALLR----SLPSLRPHLLFPS-------PDSFSFAFAATSLSSSCSSRGNDAA 131
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSL--IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+HG V G+ + FV ++L +YF + GD A +FD D + W++L AG
Sbjct: 132 AARTLHGLSVAAGYAADTFVASALAKLYFKLSRGD--DARKVFDTVPSPDTILWNTLLAG 189
Query: 181 YARRGELSMARSLFDEMPVRD--------------------------------LVSWNVM 208
L + D VR L +
Sbjct: 190 LPGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHV 249
Query: 209 ITG----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
+TG Y+K G+M+ A LF+ + D+V++NA+ISGY + GM + ++E+F+E+ + G
Sbjct: 250 VTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGW 309
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
RP+ T+++++ + G + + +H ++ A L AL +Y + +E A
Sbjct: 310 RPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLD-ADALVSTALTTLYCRLNDMESAR 368
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
+F M ++ + +W+ +I G A +G E ++A+F+ MQ L V+P IT L AC+H G
Sbjct: 369 SIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLG 428
Query: 385 KVEEGKKYFKLMRDEYNIEPNI 406
+ GK +++ E +E N+
Sbjct: 429 ALSLGKWVHRIISKE-KLELNV 449
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 148/337 (43%), Gaps = 41/337 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F ++ PD YN +I G + + +V L+ ++ +PN T V+
Sbjct: 261 GDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVI 320
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+ + + C+H +VK + + V +L + D+ +A +FD + +
Sbjct: 321 PVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTME 380
Query: 173 AWSSLTAGYARRGELSMARSLFDEM--------PVR--------------DLVSW----- 205
+W+++ +GYA+ G MA +LF M P+ L W
Sbjct: 381 SWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRII 440
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
+I YAK G + +A +F+ + ++VVSWNAMISGY L G +AL
Sbjct: 441 SKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEAL 500
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
+++++M P T LS++ AC+ G ++ G+KV + + + H ++D+
Sbjct: 501 KLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDL 560
Query: 314 YAKCGSIERAIEVFLGMRDRDV--STWSTLIGGLAFH 348
+ G + A+E+ + W L+G H
Sbjct: 561 LGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVH 597
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 199/363 (54%), Gaps = 40/363 (11%)
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK 214
DL +A FD + D+V W+++ +GY G + ARSLFD+MP RD++SWN ++ GYA
Sbjct: 74 DLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYAN 133
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLS 273
G+ME +F+++P+R+V SWN +I GY G + L F+ M G P+D TM
Sbjct: 134 IGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTL 193
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
+L+ACA LG + GK VH + V NALIDMY KCG+IE A+EVF G++ R
Sbjct: 194 VLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRR 253
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
D+ +W+T+I GLA HG E++ +F EM+ + P ++TFVGVL AC H G VE+G YF
Sbjct: 254 DLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYF 313
Query: 394 KLMRDEYNIEPNIRHYG---------------------------------------VHGD 414
M +++I P I H G V+
Sbjct: 314 NSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKK 373
Query: 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
V++G +A + L+ + ++V+LSNIY G ++ +++ M D+ KK+ G S IE
Sbjct: 374 VDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIE 433
Query: 475 ADD 477
DD
Sbjct: 434 TDD 436
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 137/317 (43%), Gaps = 62/317 (19%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
G + ++F + E + F +N +I+G AQ+ + + + +M ++ S+ PN T + V
Sbjct: 135 GDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLV 194
Query: 112 LKACTRLLYRNMGFCVHGKIVKYG--FEFNRF---VRNSLIYFHANCGDLNTASVLFDGD 166
L AC +L + G VH KYG +N+ V+N+LI + CG + A +F G
Sbjct: 195 LSACAKLGAFDFGKWVH----KYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGI 250
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMP-----------------------VRD-L 202
+ D+++W+++ G A G + A +LF EM V D L
Sbjct: 251 KRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGL 310
Query: 203 VSWNVMITGYAKQGEME----------------KANELFNEVP-KRDVVSWNAMISG--- 242
+N M T ++ E+E +A E N++P K D V W ++
Sbjct: 311 AYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKV 370
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM----T 298
Y + + ALE E ++ P + MLS + D G + ++ + D
Sbjct: 371 YKKVDIGEVALE--ELIKLEPRNPANFVMLSNIY--GDAGRFDDAARLKVAMRDTGFKKE 426
Query: 299 SGVAKVLHGNALIDMYA 315
+GV+ + + L+ Y+
Sbjct: 427 AGVSWIETDDGLVKFYS 443
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 156/528 (29%), Positives = 248/528 (46%), Gaps = 91/528 (17%)
Query: 30 INGFNSDSSALRELIYSGSVVIPGAINY-----AHKMFVKITEPDTFMYNTIIRGSAQSQ 84
+ GF SD ++ GS ++ + A K+F + E DT ++NT++ G ++
Sbjct: 134 VAGFGSD-------LFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNS 186
Query: 85 NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRN 144
+A+ ++ M K I + T + VL L +G + +K GF + +V
Sbjct: 187 CFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVIT 246
Query: 145 SLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRD--- 201
L ++ CG++ TA +LF + D+V+++++ +GY E + LF E+ V
Sbjct: 247 GLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKV 306
Query: 202 ------------------------------------LVSWNVMITGYAKQGEMEKANELF 225
+ T Y++ E+E A LF
Sbjct: 307 NSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLF 366
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+E ++ + SWNAMISGY G+ ++A+ +F+EM+ RP+ VT+ S+L+ACA LG L
Sbjct: 367 DESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALS 426
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
+GK VH L++ S + + ALIDMYAKCGSI A +F M +++ TW+ +I G
Sbjct: 427 LGKWVH-DLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGY 485
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
HG+ E++ +F EM +V PT +TF+ VL ACSHAG V EG + F+ M ++ EP
Sbjct: 486 GLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPL 545
Query: 406 IRHYG---------------------------------------VHGDVELGRLANKRLL 426
HY +H D L RLA+ +L
Sbjct: 546 PEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLF 605
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ G YVLLSNIY++ + VR ++ + K PGC+LIE
Sbjct: 606 ELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIE 653
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 118/438 (26%), Positives = 214/438 (48%), Gaps = 51/438 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + + L L Q A + +NG ++D + +L + S + AI+ A +F I PD
Sbjct: 16 LINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHL--KAIDQASLLFSTIPNPDL 73
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F+YN +IR + + +P AV LYT + K + ++P+ FT++FV+ + L +
Sbjct: 74 FLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHS- 132
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ GF + FV ++++ + + A +FDG + D V W+++ +G +
Sbjct: 133 --IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDE 190
Query: 190 ARSLFDEM--------------------PVRDLV---------------SWNVMITG--- 211
A +F +M ++DL S +ITG
Sbjct: 191 AILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLAC 250
Query: 212 -YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
Y+K GE+E A LF ++ + D+VS+NAMISGY + ++ +F+E+ GE+ + +
Sbjct: 251 LYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSS 310
Query: 271 MLSLLTACADLGDLEVGKKVH--CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
++ L+ G L + + +H CT + S + AL +Y++ IE A +F
Sbjct: 311 IVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVS---TALTTVYSRLNEIESARLLFD 367
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
++ +++W+ +I G A +G E++I++F+EMQ+ +VRP +T +L AC+ G +
Sbjct: 368 ESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSL 427
Query: 389 GKKYFKLMRDEYNIEPNI 406
GK L+ E + E NI
Sbjct: 428 GKWVHDLINRE-SFESNI 444
>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Glycine max]
Length = 548
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 156/507 (30%), Positives = 263/507 (51%), Gaps = 53/507 (10%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
L K++ A + NGF + L+ + G +++A K+F KI + + +I
Sbjct: 43 LHAGKKLHAHLVTNGFARFNVVASNLVSFYTCC--GQLSHARKLFDKIPTTNVRRWIALI 100
Query: 78 RGSAQSQNPLDAVFLYTQMEKCS-IKPNK-FTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
A+ A+ ++++M+ + PN F VLKAC + R G +HG I+K
Sbjct: 101 GSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCS 160
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
FE + FV +SLI ++ C + A +FDG D VA +++ AGY ++G + A L +
Sbjct: 161 FELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVE 220
Query: 196 EMPVRDL----VSWNVMITGYAKQGEMEKANELFN----EVPKRDVVSWNAMISGYVLCG 247
M + L V+WN +I+G++++G+ + +E+F + + DVVSW ++ISG+V
Sbjct: 221 SMKLMGLKPNVVTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNF 280
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
NK+A + F++M S G P T+ +LL ACA + VG+++H L +T +
Sbjct: 281 RNKEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYAL-VTGVEGDIYVR 339
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV- 366
+AL+DMYAKCG I A +F M +++ TW+++I G A HG+ EE+I +F +M++ V
Sbjct: 340 SALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGVA 399
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------- 411
+ +TF L ACSH G E G++ FK+M+++Y+IEP + HY
Sbjct: 400 KLDHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLHEAY 459
Query: 412 ------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
H VEL +A L+ + + + + +LLS++YA G
Sbjct: 460 CMIKTMPIEPDLFVWGALLAACRNHRHVELAEVAAMHLMELEPESAANPLLLSSVYADAG 519
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+W + E+V+K + ++K G S IE
Sbjct: 520 KWGKFERVKKRIKKGKLRKLQGLSWIE 546
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 206/381 (54%), Gaps = 40/381 (10%)
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E N + S+I + DL +A FD + D+V W+++ +GY G + ARSLFD+
Sbjct: 3 EKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQ 62
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP RD++SWN ++ GYA G+ME +F+++P+R+V SWN +I GY G + L F
Sbjct: 63 MPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSF 122
Query: 257 EEMRSVGER-PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
+ M G P+D TM +L+ACA LG + GK VH + V NALIDMY
Sbjct: 123 KRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYG 182
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
KCG+IE A+EVF G++ RD+ +W+T+I GLA HG E++ +F EM+ + P ++TFVG
Sbjct: 183 KCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVG 242
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------- 410
VL AC H G VE+G YF M +++I P I H G
Sbjct: 243 VLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVK 302
Query: 411 --------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
V+ V++G +A + L+ + ++V+LSNIY G ++ +++
Sbjct: 303 ADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAARLK 362
Query: 457 KLMDDSDIKKQPGCSLIEADD 477
M D+ KK+ G S IE DD
Sbjct: 363 VAMRDTGFKKEAGVSWIETDD 383
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 52/232 (22%)
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
M +++V W MI GY ++ A F+ P+RD+V WN MISGY+ G +A +F
Sbjct: 1 MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
++M C D V+ N +++ YA
Sbjct: 61 DQM-----------------PCRD-----------------------VMSWNTVLEGYAN 80
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEITFVG 375
G +E VF M +R+V +W+ LI G A +G E + F+ M V P + T
Sbjct: 81 IGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTL 140
Query: 376 VLVACSHAGKVEEGK---KYFKLMRDEYN-IEPNIRH-----YGVHGDVELG 418
VL AC+ G + GK KY + + YN ++ N+++ YG G +E+
Sbjct: 141 VLSACAKLGAFDFGKWVHKYGETLG--YNKVDVNVKNALIDMYGKCGAIEIA 190
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 136/317 (42%), Gaps = 62/317 (19%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
G + ++F + E + F +N +I+G AQ+ + + + +M ++ S+ PN T + V
Sbjct: 82 GDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLV 141
Query: 112 LKACTRLLYRNMGFCVHGKIVKYG--FEFNRF---VRNSLIYFHANCGDLNTASVLFDGD 166
L AC +L + G VH KYG +N+ V+N+LI + CG + A +F G
Sbjct: 142 LSACAKLGAFDFGKWVH----KYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGI 197
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMP-----------------------VRD-L 202
+ D+++W+++ G A G + A +LF EM V D L
Sbjct: 198 KRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGL 257
Query: 203 VSWNVMITGYAKQGEME----------------KANELFNEVP-KRDVVSWNAMISG--- 242
+N M T ++ E+E +A E N++P K D V W ++
Sbjct: 258 AYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKV 317
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM----T 298
Y + + ALE E ++ P + MLS D G + ++ + D
Sbjct: 318 YKKVDIGEVALE--ELIKLEPRNPANFVMLS--NIYGDAGRFDDAARLKVAMRDTGFKKE 373
Query: 299 SGVAKVLHGNALIDMYA 315
+GV+ + + L+ Y+
Sbjct: 374 AGVSWIETDDGLVKFYS 390
>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
Length = 534
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 166/508 (32%), Positives = 251/508 (49%), Gaps = 89/508 (17%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C N + I A + + D+ + ELI S + +I+YA+ +F ++ P+
Sbjct: 35 LLRNCKNNAQVPSIHAKIIRTFHDQDAFVVFELIRVCSTL--DSIDYAYDVFRYVSNPNV 92
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++Y +I G S D V LY +M S+ P+ + + VLKAC R +H +
Sbjct: 93 YLYTAMIDGFVSSGRSADGVSLYHRMIHSSVLPDNYVITSVLKACGLDECRE----IHSQ 148
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++K GF +R V G M++ Y + GEL+ A
Sbjct: 149 VLKLGFGSSRSV----------------------GLKLMEI---------YGKSGELADA 177
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
+ +FDEMP RD V VMI Y++ G +++A ELF +V +D V W AMI G V
Sbjct: 178 KKVFDEMPDRDQVVATVMINCYSECGCIKEALELFQDVKIKDTVCWTAMIDGLVRNREMN 237
Query: 251 QALEMFEEMR-SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
+ALE+F EM+ SV P + + G VH + + ++ + GNA
Sbjct: 238 KALELFREMQLSVFYLPARIWV-----------RWSSGAGVHSFVENQKMELSNFV-GNA 285
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
LI+MY++CG I A VF GMRD+DV +++T+I GLA HG + E+I +FR+M RP
Sbjct: 286 LINMYSRCGDINVAKRVFKGMRDKDVISYNTMISGLAMHGASVEAINVFRDMVNRGFRPN 345
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
++T V +L ACSH G ++ G + F M +++EP I HYG
Sbjct: 346 QVTLVALLNACSHGGLLDIGLEVFNSMWRVFSVEPQIEHYGCIVDLLGRVGRLEEAYRFI 405
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+HG++ELG KRL +SG YVLLS+IYAS G+W
Sbjct: 406 ENMLIEPDHIMLGALLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSHIYASSGKWK 465
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDK 478
++R+ M +S I+K+PGCS IE D++
Sbjct: 466 ESTEIRESMRESGIEKEPGCSTIEVDNQ 493
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 174/535 (32%), Positives = 258/535 (48%), Gaps = 81/535 (15%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQA-LVTINGFNSDSSALRELIYSGSVVIPGAINYAHKM 61
N + S L C ++ +KQ A L+T A + L V ++ YAHK+
Sbjct: 177 VNHSKLSSLIDLCKSINQIKQTHANLITTAQITLPVIANKFL----KNVALASLTYAHKL 232
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNP-LDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLL 119
F +I +PD F+YNT+I+ + S + LD++ ++ + + S PN+++F F AC +
Sbjct: 233 FDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGM 292
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
G V VK G + N FV N+LI
Sbjct: 293 CVREGEQVFTHAVKVGLDGNVFVVNALI-------------------------------G 321
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
+ + G + AR++FD RD SWN MI Y G M A ELF+E+ +RDVVSW+ +
Sbjct: 322 MFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTI 381
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
I+GYV G +AL+ F +M +P++ TM+S L AC++L L+ GK +H +
Sbjct: 382 IAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNI 441
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMF 358
+ L +LIDMYAKCG I+ A VF + R V W+ +IGG A HG EE+I +F
Sbjct: 442 KMNDRLLA-SLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVF 500
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
+M+ KV P ++TF+ +L ACSH V+EGK YF+LM +Y I P I HYG
Sbjct: 501 EKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSR 560
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
++ D+E G + + + + G VLL
Sbjct: 561 SGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLL 620
Query: 440 SNIYASRGEWNRVEKVRKLMD-DSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
NIY++ G WN VR+ + +SD KK PG S IE + F ++L + P S
Sbjct: 621 GNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNG-VFHEFLVGDRSHPQS 674
>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial-like, partial [Cucumis sativus]
Length = 719
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 243/468 (51%), Gaps = 40/468 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A K+F K+ + + + +I G + D L+ M + ++ N T + +L
Sbjct: 222 GKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLL 281
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+AC G +HG ++ GF+ + ++ NS+I ++ C ++ A+ FD K D+V
Sbjct: 282 EACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIV 341
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
W+SL GY + G L A LF+ MP +D+VSW +I G+A +G +++ LF +P++D
Sbjct: 342 TWNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKD 401
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
++W A+ISG V + A F +M +P+ T+ +L+A A + L G ++H
Sbjct: 402 AIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHA 461
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ M+ + N+L+ MY+KCG+++ A+++F ++ +V ++T+I GLA +G +
Sbjct: 462 IVTKMSMENDLSIQ-NSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGK 520
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY--- 409
E++ +F +MQ + P ITF+GVL AC H G VEEG++YF LMR Y+I+P HY
Sbjct: 521 EALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACM 580
Query: 410 --------------------------GVHGDV----------ELGRLANKRLLNMRKDES 433
GV G V ++ LA + L + + +
Sbjct: 581 VDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSA 640
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFL 481
YV+LSN+++ G+ + E +R + +KK PGCS I D+ L
Sbjct: 641 TPYVILSNLHSISGDERKHELIRLMKKSRGLKKSPGCSWIILKDEVHL 688
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 175/354 (49%), Gaps = 29/354 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A +F ++ +T + ++ A++ A ++ ++ PN +++ ++
Sbjct: 69 GCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPD----PNVASYNAMI 124
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFV--RNSLIYFHANCGDLNTASVLFDGDAKMD 170
A R RNM V FE + RNS+ Y G ++ +FD K+
Sbjct: 125 TAYHR---RNM--------VDEAFELFSSMPQRNSVSYATMITGFVHAG--MFDMAEKLH 171
Query: 171 -----VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF 225
+V+ + L GY++ G + A +FD M +D+VSW+ MI+G + G++ +A +LF
Sbjct: 172 REKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLF 231
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+++P R+VV+W MI GY+ K +F MR G + T+ LL AC
Sbjct: 232 DKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYG 291
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
G ++H +L + V L N++I MY++C SI+ A + F M +D+ TW++LI G
Sbjct: 292 EGIQIHGLVLSLGFDVDAYL-ANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGY 350
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
G E+++ +F M + V +++ ++ + G+++E F++M ++
Sbjct: 351 VQSGNLEKAVFLFENMPQKDV----VSWTTLICGFASEGRIDEFIGLFQMMPEK 400
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/502 (29%), Positives = 247/502 (49%), Gaps = 78/502 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I ++K+F IT + + ++I G ++ + + L+ +M + S+ N++T+ ++
Sbjct: 202 GEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLV 261
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
ACT+L + G HG ++K G E + + SL+ + CGD++ A +F+ + +D+V
Sbjct: 262 MACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLV 321
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP---------------------------------- 198
W+++ GY G ++ A SLF +M
Sbjct: 322 MWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLS 381
Query: 199 ----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
+ D N ++ YAK + A +F ++D+V+WN++ISG+ G +AL
Sbjct: 382 IKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALF 441
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDM 313
+F M + P+ VT+ SL +ACA LG L +G +H + + + +H G AL+D
Sbjct: 442 LFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDF 501
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YAKCG E A +F + +++ TWS +IGG G + S+ +F EM + + +P E TF
Sbjct: 502 YAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTF 561
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY------------------------ 409
VL ACSH G V EGKKYF M +YN P+ +HY
Sbjct: 562 TSVLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMP 621
Query: 410 ---------------GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
G+H +LG + K++L++ D++ YVL+SN+YAS G W++ ++
Sbjct: 622 IQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKE 681
Query: 455 VRKLMDDSDIKKQPGCSLIEAD 476
VR LM + K G S++E++
Sbjct: 682 VRNLMKQRGLSKIAGHSIMESE 703
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 196/421 (46%), Gaps = 50/421 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINY---AHKMFVKITE 67
L KCTN+ +L+Q ++T NG D S +L V + G+ Y A +F +I E
Sbjct: 62 LLSKCTNIDSLRQAHGVLTGNGLMGDISIATKL-----VSLYGSFGYTKDARLVFDQIPE 116
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
PD +++ I+R + + + Y + K + FS LKACT + + G +
Sbjct: 117 PDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKI 176
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H +IVK F+ V L+ +A CG++ ++ +F+ +VV W+S+ AGY +
Sbjct: 177 HCQIVKVP-SFDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLY 235
Query: 188 SMARSLFDEMPVRDLVS----------------------W-------------NVMITG- 211
LF+ M ++ W + ++T
Sbjct: 236 EEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSL 295
Query: 212 ---YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
Y K G++ A +FNE D+V W AMI GY G +AL +F++M VG +P+
Sbjct: 296 LDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNC 355
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
VT+ S+L+ C +G+LE+G+ +H L + G+ NAL+ MYAKC A VF
Sbjct: 356 VTIASVLSGCGLVGNLELGRSIHG--LSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFE 413
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
++D+ W+++I G + +G E++ +F M V P +T + AC+ G +
Sbjct: 414 MESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAI 473
Query: 389 G 389
G
Sbjct: 474 G 474
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 102/189 (53%), Gaps = 5/189 (2%)
Query: 206 NVMITG----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
NV++TG YAK GE++ + ++F ++ R+VV W +MI+GYV + ++ L +F MR
Sbjct: 188 NVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRE 247
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
++ T +L+ AC L L GK H L+ ++ L +L+DMY KCG I
Sbjct: 248 NSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCL-VTSLLDMYVKCGDIS 306
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A VF D+ W+ +I G +G E++++F++M + ++P +T VL C
Sbjct: 307 NARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCG 366
Query: 382 HAGKVEEGK 390
G +E G+
Sbjct: 367 LVGNLELGR 375
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 100/185 (54%), Gaps = 2/185 (1%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+++ Y G + A +F+++P+ D W ++ Y L + + ++ ++ + G D
Sbjct: 94 LVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYD 153
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
D+ L AC ++ DL+ GKK+HC ++ + S VL G L+DMYAKCG I+ + +VF
Sbjct: 154 DIVFSKALKACTEVQDLDNGKKIHCQIVKVPSFDNVVLTG--LLDMYAKCGEIKSSYKVF 211
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
+ R+V W+++I G + EE + +F M+ V E T+ +++AC+ +
Sbjct: 212 EDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALH 271
Query: 388 EGKKY 392
+GK +
Sbjct: 272 QGKWF 276
>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 499
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 157/525 (29%), Positives = 255/525 (48%), Gaps = 89/525 (16%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSD----SSALRELIYSGSVVIPGA----- 54
N S L K C L+ L Q A +G S+ +S ++++ + + P A
Sbjct: 3 NYSSCSYLLKLCRTLKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASKE 62
Query: 55 -INYAHKMFVKITEPDTFMYNTIIR-GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
++YA +F IT P TF +NTIIR + + L + + +M + S+ P+ TF FV
Sbjct: 63 VVSYATSVFRFITNPSTFCFNTIIRICTLHEPSSLSSKRFFVEMRRRSVPPDFHTFPFVF 122
Query: 113 KACTRLLYRNMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
KAC ++ +H + +++G + F N+LI
Sbjct: 123 KACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRV--------------------- 161
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
Y+ + A LFDE P RD+V++NV+I G K E+ +A ELF+ +P
Sbjct: 162 ----------YSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPL 211
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
RD+VSWN++ISGY ++A+++F+EM ++G +PD+V ++S L+ACA GD + GK +
Sbjct: 212 RDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAI 271
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
H + L L+D YAKCG I+ A+E+F D+ + TW+ +I GLA HG
Sbjct: 272 HDYTKRKRLFIDSFL-ATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGN 330
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
E ++ FR+M ++P +TF+ VLV CSH+G V+E + F MR Y++ ++HYG
Sbjct: 331 GELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYG 390
Query: 411 -------------------------------------------VHGDVELGRLANKRLLN 427
+HG++E+ A R+
Sbjct: 391 CMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVKA 450
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD-DSDIKKQPGCS 471
+ ++ G Y ++ +YA+ W V KVR+++D D +KK G S
Sbjct: 451 LSPEDGGVYKVMVEMYANAERWEEVVKVREIIDRDKKVKKNVGFS 495
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/465 (31%), Positives = 235/465 (50%), Gaps = 67/465 (14%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++ +TE +N +I G DA+ L+ +M ++ ++ T++ V+
Sbjct: 237 GDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVI 296
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + +G VH I+K +LN D D + V
Sbjct: 297 SACADGGFFLLGKQVHAYILK--------------------NELNP-----DRDFLLSV- 330
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
++L Y + G++ AR +F EMPV+D+++WN +++GY G ME+A F ++P+++
Sbjct: 331 -GNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKN 389
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+++W MISG G +QAL++F +M+ G P+D +TAC+ LG LE G+++H
Sbjct: 390 LLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHA 449
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
++ + + + GNA+I MYA+CG +E A +FL M D +W+++I L HG
Sbjct: 450 QIVHLGHD-STLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGV 508
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
++I ++ +M + + P TF+ VL ACSHAG VEEG +YF M + Y I P HY
Sbjct: 509 KAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARM 568
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
HG+++LG A ++L +
Sbjct: 569 IDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHD 628
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G YVLLSN+YAS G WN V + RKLM D +KK+P CS E ++K
Sbjct: 629 GTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENK 673
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 176/359 (49%), Gaps = 59/359 (16%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY--RNMGFC 126
DT YN +I G + + A+ L+ M + +P+ FTF+ VL A T + Y R G
Sbjct: 111 DTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCG-Q 169
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+HG +VK+G E V N+L+ + C + + +
Sbjct: 170 MHGTVVKFGIEIFPAVLNALLSVYVKC----------------------ASSPLVSSSSL 207
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
++ AR LFDEMP R+ W +ITGY + G++ A E+ + + ++ ++WNAMISGY+
Sbjct: 208 MASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHH 267
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD---------- 296
G+ + AL +F +MR +G + D+ T S+++ACAD G +GK+VH +L
Sbjct: 268 GLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFL 327
Query: 297 MTSG------------------------VAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
++ G V ++ N L+ Y G +E A F M +
Sbjct: 328 LSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPE 387
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+++ TW+ +I GLA +GF E+++ +F +M+ P + F G + ACS G +E G++
Sbjct: 388 KNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQ 446
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 131/294 (44%), Gaps = 26/294 (8%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VHG ++ GF+ + N LI + D A LFD + DV+A ++L Y+ G
Sbjct: 35 VHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGN 94
Query: 187 LSMARSLFDEMPV--RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW-NAMISGY 243
L MAR +F+E P+ RD V +N MITGY+ + A ELF + W N +
Sbjct: 95 LKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFR------AMRWANFQPDDF 148
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVT-------------MLSLLTACADLGDLEVGKKV 290
+ + +F + R G+ V +LS+ CA + +
Sbjct: 149 TFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLM 208
Query: 291 HCT--LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
L D + + LI Y + G + A E+ M ++ W+ +I G H
Sbjct: 209 ASARKLFDEMPKRNEFI-WTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHH 267
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYN 401
G E+++ +FR+M+ L V+ E T+ V+ AC+ G GK+ + ++++E N
Sbjct: 268 GLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELN 321
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 160/539 (29%), Positives = 259/539 (48%), Gaps = 89/539 (16%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
+Q+ L+ GFNS ++ + LI + + A K+F ++T+ D +N++I G
Sbjct: 271 RQVHGLICKLGFNSYNTVVNSLI--SFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYV 328
Query: 82 QSQNPLD--AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN 139
+ N LD + ++ +M + + T V AC + +G +H +K +
Sbjct: 329 K--NGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAA-TLD 385
Query: 140 RFVR--NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
R VR N+L+ ++ CGDLN+A +F+ + VV+W+S+ GY R G A LFDEM
Sbjct: 386 REVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEM 445
Query: 198 PVRDLVS---------------------------------------WNVMITGYAKQGEM 218
R +V N + YAK G M
Sbjct: 446 KSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSM 505
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+ A+++F+ + K+DV+SWN MI GY + +AL +F EM+ +PD T+ +L AC
Sbjct: 506 KDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR-ESKPDGTTVACILPAC 564
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
A L L+ G+++H L K + NA++DMY KCG + A +F + ++D+ +W
Sbjct: 565 ASLAALDKGREIHGYALRNGYSEDKYVT-NAVVDMYVKCGLLVLARSLFDMIPNKDLVSW 623
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+ +I G HG+ E+I F +M+ + P E++F+ +L ACSH+G ++EG K F +M+
Sbjct: 624 TVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKK 683
Query: 399 EYNIEPNIRHYG---------------------------------------VHGDVELGR 419
E IEPN+ HY +H DV+L
Sbjct: 684 ECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAE 743
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+R+ + + +G YVLL+NIYA +W V+K+RK + +KK PGCS IE K
Sbjct: 744 KVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGK 802
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 135/455 (29%), Positives = 230/455 (50%), Gaps = 53/455 (11%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
++R +++++++ +G D +L++ V G + +F K++E F++N +
Sbjct: 165 SIRDGRRVRSIIESSGVMIDGILGVKLVFM--YVKCGDLKEGRMVFDKLSESKIFLWNLM 222
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
I + S N +++ L+ QM + IKPN +TFS +LK + G VHG I K GF
Sbjct: 223 ISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGF 282
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
V NSLI F+ + A LFD DV++W+S+ +GY + G +F +
Sbjct: 283 NSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIK 342
Query: 197 MPV----------------------------------------RDLVSWNVMITGYAKQG 216
M V R++ N ++ Y+K G
Sbjct: 343 MLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCG 402
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
++ A +F + ++ VVSW +MI+GYV G++ A+++F+EM+S G PD + S+L
Sbjct: 403 DLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILN 462
Query: 277 ACADLGDLEVGKKVHCTL----LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
ACA G+L+ GK VH + L+ S V+ NAL DMYAKCGS++ A +VF M+
Sbjct: 463 ACAINGNLKSGKIVHDYIRENNLETNSFVS-----NALTDMYAKCGSMKDAHDVFSHMKK 517
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK- 391
+DV +W+T+IGG + E++ +F EMQR + +P T +L AC+ +++G++
Sbjct: 518 KDVISWNTMIGGYTKNSLPNEALTLFAEMQR-ESKPDGTTVACILPACASLAALDKGREI 576
Query: 392 YFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426
+ +R+ Y+ + + + V V+ G L R L
Sbjct: 577 HGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSL 611
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 43/349 (12%)
Query: 99 CSIKPNKF---TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
CS + + F + +L+ C G V I G + + L++ + CGD
Sbjct: 141 CSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGD 200
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------------------ 197
L ++FD ++ + W+ + + Y+ G + +LF +M
Sbjct: 201 LKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKC 260
Query: 198 -----------PVRDLV------SWNV----MITGYAKQGEMEKANELFNEVPKRDVVSW 236
V L+ S+N +I+ Y ++ A +LF+E+ RDV+SW
Sbjct: 261 FAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISW 320
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
N+MISGYV G++ + +E+F +M G D TM+++ ACA++G L +GK +H +
Sbjct: 321 NSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIK 380
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ +V N L+DMY+KCG + AI VF M ++ V +W+++I G G ++ +I
Sbjct: 381 AATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIK 440
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
+F EM+ V P +L AC+ G ++ GK +R E N+E N
Sbjct: 441 LFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIR-ENNLETN 488
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 121/249 (48%), Gaps = 19/249 (7%)
Query: 154 GDLNTASVLF--DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV-SWNVMIT 210
GDL A L ++ D+ A+ S+ A R +S+ D VR ++ S VMI
Sbjct: 131 GDLKNAMELLCSSQNSNFDLGAYCSILQLCAER------KSIRDGRRVRSIIESSGVMID 184
Query: 211 G---------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
G Y K G++++ +F+++ + + WN MIS Y G +++ +F++M
Sbjct: 185 GILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLE 244
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
+G +P+ T S+L A + +E G++VH + + + N+LI Y +
Sbjct: 245 LGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVV-NSLISFYFVGRKVR 303
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A ++F + DRDV +W+++I G +G + I +F +M V T V V VAC+
Sbjct: 304 CAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACA 363
Query: 382 HAGKVEEGK 390
+ G + GK
Sbjct: 364 NIGTLLLGK 372
>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Brachypodium distachyon]
Length = 601
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 155/497 (31%), Positives = 237/497 (47%), Gaps = 75/497 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
KQ+ A V +NG +S LI + G A MF + PD N ++ G
Sbjct: 137 KQVHAHVLVNGLHSRVYLRNSLI--KMYLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYV 194
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR- 140
+ ++A+ L+ M I +++ +L C RL +G VHG +V+ +R
Sbjct: 195 KGGCVVNALQLFRDMASREIGVDQYAAVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRG 254
Query: 141 -FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV 199
+ N+L+ +A CG++NT A +F E
Sbjct: 255 LILSNALLDMYAKCGEMNT-------------------------------AMRVFGEAKE 283
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
+D +SWN MI G+A G ++ A++ F + P RD++SWN +++GY C +E+F +M
Sbjct: 284 KDDISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNTLLAGYGRCREFAAVMELFNDM 343
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
S RPD VT ++L++A G L +GK VH +L G + L+DMY KCG+
Sbjct: 344 LSSRVRPDKVTAVTLISAAVSKGALNLGKSVHGWVLK-EHGTQDAFLASTLVDMYCKCGN 402
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
++ A VF D+DV+ W+ +I GLAFHG E++ +F MQ V P +T V VL A
Sbjct: 403 VKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWNMQNEGVAPNGVTLVTVLSA 462
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV------------------------ 415
CSHAG ++EG + F M+ +NIEP + H+G D+
Sbjct: 463 CSHAGLLDEGCEIFYTMQKRFNIEPRVEHFGCMVDLLARSGRLSDAVGLARMMPMKPSRS 522
Query: 416 ---------------ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
E+ +A+K LL + E G YVLLSN+YA+ G+WN KVR+ M+
Sbjct: 523 IWGSILSVSSSCQNTEVAEIASKELLRLEPTEEGGYVLLSNLYAAGGQWNYSNKVRENME 582
Query: 461 DSDIKKQPGCSLIEADD 477
++K G S + DD
Sbjct: 583 MRGVRKSAGASGLAVDD 599
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 216/370 (58%), Gaps = 49/370 (13%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKM--DVVAWSSLTAGYARRGELSMARSLFDEMPVRD 201
++++ +A G+L+ A +FD + +VV W+S+ G+AR G L +AR +FDEMPVR+
Sbjct: 197 STMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRN 256
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
LVSWN M+ GY+ +M+ A ELF+ +P++DVVSW MISGY G + LE+F M++
Sbjct: 257 LVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQT 316
Query: 262 VGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH--GNALIDMYAKCG 318
+P++VTM+S+L+ACA+L LE G+ VH +D V + G ALIDMYAKCG
Sbjct: 317 ESNVQPNEVTMVSVLSACANLTALEEGRWVH-AFIDKHKMVLNNEYNLGAALIDMYAKCG 375
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
+ A+++F + ++VS W+ LI LA +G A +S+ F +M+R +P +ITFVGVL
Sbjct: 376 RTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLT 435
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLA----------------- 421
ACSH G V+EG++ F+ M ++P ++HYG D+ LGR
Sbjct: 436 ACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDM-LGRAGLLEEAEELIRSMPMAPD 494
Query: 422 -------------NKRL------------LNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
+KR LN+ +SG +VL+S+IYA+ G+W V + R
Sbjct: 495 VMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEAR 554
Query: 457 KLMDDSDIKK 466
+++ S I+K
Sbjct: 555 QVVQRSGIRK 564
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 173/342 (50%), Gaps = 46/342 (13%)
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-LYRNMGFCVH 128
TF+ +IR SA S +P + ++ + +C + P++FT +L + +L + G VH
Sbjct: 59 TFLQKILIRASASSASPGLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVH 118
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+ V+ GF + FV N+L+ + D + +F A
Sbjct: 119 AQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAG-------------------- 158
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
V D+VSWN +I GY K GEME A +F+E+P+R+ VSW+ M+ GY G
Sbjct: 159 ----------VADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGE 208
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
A EMF+ M ++G + VT S++T A G L + +K+ + V ++ N
Sbjct: 209 LDVAREMFDRMPAIGR--NVVTWNSMVTGFARHGLLPLARKMFDEM-----PVRNLVSWN 261
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ-RLKVR 367
A++ Y+ ++ A E+F M ++DV +W+ +I G A G ++++ +FR MQ V+
Sbjct: 262 AMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQ 321
Query: 368 PTEITFVGVLVACSHAGKVEEGK-------KYFKLMRDEYNI 402
P E+T V VL AC++ +EEG+ K+ ++ +EYN+
Sbjct: 322 PNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNL 363
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 130/297 (43%), Gaps = 15/297 (5%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFTFSFVLK 113
++ A ++F + E D + +I G AQ+ D + L+ M+ + +++PN+ T VL
Sbjct: 273 MDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLS 332
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNR--FVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
AC L G VH I K+ N + +LI +A CG + A +F+ + +V
Sbjct: 333 ACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNV 392
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNE 227
AW++L A G + F++M + +++ ++T + G +++ F
Sbjct: 393 SAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQS 452
Query: 228 VP-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ + +V + M+ G+ ++A E+ +RS+ PD + +LL AC
Sbjct: 453 MASTCGVQPEVKHYGCMVDMLGRAGLLEEAEEL---IRSMPMAPDVMVFGALLGACRMHK 509
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
+V ++V + + + + D+YA G +E ++ + W+
Sbjct: 510 RFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKWT 566
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A K+F + + +N +I A + N D+V + QM++ KPN TF VL
Sbjct: 375 GRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVL 434
Query: 113 KACTRLLYRNMGFCVHGKIVKYG 135
AC+ HG +V G
Sbjct: 435 TACS-----------HGGLVDEG 446
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 161/553 (29%), Positives = 271/553 (49%), Gaps = 79/553 (14%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVV--IPGAINYAHKMFVKITEPDT-FMYN 74
LR ++++ A V G + D A +LI S +++ +P P T + N
Sbjct: 117 LRHVQELHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSAAAAPPFAPSTALLAN 176
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
T++R A + P A+ ++ M + + FT+SF++KA + H + K
Sbjct: 177 TLLRAYALNSLPHAALAVFVDMPL--RQRDTFTYSFLIKALATAGVTPV-RAAHTHVFKL 233
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
G + FV N+LI ++ L+ A +FD DVV+W++ A R+GE+ ARS+F
Sbjct: 234 GSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMF 293
Query: 195 DEMPVRD-------------------------------LVSWNVMITGYAKQGEMEKANE 223
DEMP +D +VSW+ +++ Y K+G+ME A
Sbjct: 294 DEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARV 353
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+F+++P +++V+W M+S G+ +A +F EM+ D V ++S+L ACA+ G
Sbjct: 354 IFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGC 413
Query: 284 LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTLI 342
L +GK++H + G + ++ NAL+DM+ KCG + RA +F + ++D +W+ +I
Sbjct: 414 LALGKRIHRHVRQRKLGRSTLV-CNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIII 472
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
GG A HG E+++ +F +M++ P +T + VL AC+H G VEEG+++F M +Y I
Sbjct: 473 GGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGI 532
Query: 403 EPNIRHYG---------------------------------------VHGDVELGRLANK 423
+P I HYG +H +VE LA
Sbjct: 533 KPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKNVEYAELAAN 592
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQY 483
L N++ +G+Y +LSNIYA G+W+ + K R M + +K G S IE D+ AF ++
Sbjct: 593 ELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELDE-AFHEF 651
Query: 484 LFNLKPKPNSGNL 496
+ P S +
Sbjct: 652 TVGDRKHPESDQI 664
>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial-like [Cucumis sativus]
Length = 711
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 243/468 (51%), Gaps = 40/468 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A K+F K+ + + + +I G + D L+ M + ++ N T + +L
Sbjct: 214 GKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLL 273
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+AC G +HG ++ GF+ + ++ NS+I ++ C ++ A+ FD K D+V
Sbjct: 274 EACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIV 333
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
W+SL GY + G L A LF+ MP +D+VSW +I G+A +G +++ LF +P++D
Sbjct: 334 TWNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKD 393
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
++W A+ISG V + A F +M +P+ T+ +L+A A + L G ++H
Sbjct: 394 AIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHA 453
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ M+ + N+L+ MY+KCG+++ A+++F ++ +V ++T+I GLA +G +
Sbjct: 454 IVTKMSMENDLSIQ-NSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGK 512
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY--- 409
E++ +F +MQ + P ITF+GVL AC H G VEEG++YF LMR Y+I+P HY
Sbjct: 513 EALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACM 572
Query: 410 --------------------------GVHGDV----------ELGRLANKRLLNMRKDES 433
GV G V ++ LA + L + + +
Sbjct: 573 VDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSA 632
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFL 481
YV+LSN+++ G+ + E +R + +KK PGCS I D+ L
Sbjct: 633 TPYVILSNLHSISGDERKHELIRLMKKSRGLKKSPGCSWIILKDEVHL 680
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 175/354 (49%), Gaps = 29/354 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A +F ++ +T + ++ A++ A ++ ++ PN +++ ++
Sbjct: 61 GCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPD----PNVASYNAMI 116
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFV--RNSLIYFHANCGDLNTASVLFDGDAKMD 170
A R RNM V FE + RNS+ Y G ++ +FD K+
Sbjct: 117 TAYHR---RNM--------VDEAFELFSSMPQRNSVSYATMITGFVHAG--MFDMAEKLH 163
Query: 171 -----VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF 225
+V+ + L GY++ G + A +FD M +D+VSW+ MI+G + G++ +A +LF
Sbjct: 164 REKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLF 223
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+++P R+VV+W MI GY+ K +F MR G + T+ LL AC
Sbjct: 224 DKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYG 283
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
G ++H +L + V L N++I MY++C SI+ A + F M +D+ TW++LI G
Sbjct: 284 EGIQIHGLVLSLGFDVDAYL-ANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGY 342
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
G E+++ +F M + V +++ ++ + G+++E F++M ++
Sbjct: 343 VQSGNLEKAVFLFENMPQKDV----VSWTTLICGFASEGRIDEFIGLFQMMPEK 392
>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial-like [Glycine max]
Length = 699
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 165/557 (29%), Positives = 261/557 (46%), Gaps = 96/557 (17%)
Query: 9 SRLWKKCTNLRTLKQ--IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
S ++K C R + I + SDS L L+ + + ++ A + F +I
Sbjct: 137 SIVFKSCAESRDFQTLTITHCHFVKSLPSDSFVLTCLVDAYAKF--ARVDEATRAFDEIH 194
Query: 67 EPDTFM-YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
E D + + ++I Q+ + + L+ +M + + N+FT ++ ACT+L + + G
Sbjct: 195 ENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQGK 254
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM----DVVAWSSLTAGY 181
VHG ++K G N ++ SL+ + CG++ A +FD + D+V+W+++ GY
Sbjct: 255 WVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGY 314
Query: 182 ARRGELSMARSLF-------------------------------------------DEMP 198
++RG +A LF D+ P
Sbjct: 315 SQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHGLAVKCGLDDHP 374
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
VR N ++ YAK G + A +F + ++DVVSWN++ISG+V G +AL +F
Sbjct: 375 VR-----NALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRR 429
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M PD VT++ +L+ACA LG L +G VH L V+ + G AL++ YAKCG
Sbjct: 430 MGLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNFYAKCG 489
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
A VF M +++ TW +IGG G S+ +FR+M V P E+ F +L
Sbjct: 490 DARAARMVFDSMGEKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNEVVFTTILA 549
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY----------------------------- 409
ACSH+G V EG + F LM E N P+++HY
Sbjct: 550 ACSHSGMVGEGSRLFNLMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIERMPVQPSV 609
Query: 410 ----------GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459
G+H ELG A K++L + DE+ YVL+SN+YAS G W V++VR+++
Sbjct: 610 SVFGAFLHGCGLHSRFELGGAAIKKMLELHPDEACYYVLVSNLYASDGRWGMVKQVREMI 669
Query: 460 DDSDIKKQPGCSLIEAD 476
+ K PGCS +E D
Sbjct: 670 KQRGLNKVPGCSSVEMD 686
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 5/182 (2%)
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDDVT 270
YA G++ A ++FN +P RD+ + MI Y L + ++ MR S+ P D
Sbjct: 75 YASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLNDTPSGVVSLYRLMRLSLHPTPHDYV 134
Query: 271 MLSLL-TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
+ S++ +CA+ D + HC + + VL L+D YAK ++ A F
Sbjct: 135 LFSIVFKSCAESRDFQTLTITHCHFVKSLPSDSFVL--TCLVDAYAKFARVDEATRAFDE 192
Query: 330 MRDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
+ + DV +W+++I + A E + +F M+ V E T ++ AC+ + +
Sbjct: 193 IHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQ 252
Query: 389 GK 390
GK
Sbjct: 253 GK 254
>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 701
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 171/561 (30%), Positives = 270/561 (48%), Gaps = 97/561 (17%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGF-----NSD---SSALRELIYSGSVVIPG 53
R + + S K C+ L+ L+ + I+GF +SD SAL EL YS G
Sbjct: 102 RPDNYTVSIALKSCSGLQKLELGK---MIHGFLKKKIDSDMFVGSALIEL-YSKC----G 153
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-SIKPNKFTFSFVL 112
+N A K+F + +PD ++ +II G Q+ +P A+ +++M + P+ T
Sbjct: 154 QMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAA 213
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC +L N+G VHG + + GF+ + NS++ + G + A+ LF D++
Sbjct: 214 SACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDII 273
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR-------------------------------- 200
+WSS+ A YA G + A +LF+EM +
Sbjct: 274 SWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLA 333
Query: 201 -------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
D+ ++ Y K E A ELFN +PK+DVVSW + SGY GM ++L
Sbjct: 334 VNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSL 393
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
+F M S G RPD + ++ +L A ++LG ++ +H + + + G +LI++
Sbjct: 394 GVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFI-GASLIEL 452
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ-RLKVRPTEIT 372
YAKC SI+ A +VF G+R DV TWS++I FHG EE++ + +M V+P ++T
Sbjct: 453 YAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVT 512
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
FV +L ACSHAG +EEG K F +M +EY + PNI HYG
Sbjct: 513 FVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNM 572
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
+H ++++G LA L + + +G Y LLSNIY W+
Sbjct: 573 PMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAA 632
Query: 454 KVRKLMDDSDIKKQPGCSLIE 474
K+R L+ ++ +KK G S++E
Sbjct: 633 KLRTLIKENRLKKIVGQSMVE 653
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 200/426 (46%), Gaps = 53/426 (12%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVKITE 67
+L + C + ++ Q+ + G DS + +L +Y+ ++ +AHK+F +
Sbjct: 9 KLLETCCSKISITQLHSQCLKVGLALDSFVVTKLNVLYARY----ASLCHAHKLFEETPC 64
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI---KPNKFTFSFVLKACTRLLYRNMG 124
+++N ++R ++ + L+ QM ++ +P+ +T S LK+C+ L +G
Sbjct: 65 KTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELG 124
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+HG +K + + FV ++LI ++ CG +N A +F K DVV W+S+ GY +
Sbjct: 125 KMIHG-FLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQN 183
Query: 185 GELSMARSLFDEMPVRDLVS---------------------------------------- 204
G +A + F M V + VS
Sbjct: 184 GSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCL 243
Query: 205 WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
N ++ Y K G + A LF E+P +D++SW++M++ Y G AL +F EM
Sbjct: 244 ANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRI 303
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIERA 323
+ VT++S L ACA +LE GK++H L + G + AL+DMY KC S E A
Sbjct: 304 ELNRVTVISALRACASSSNLEEGKQIH--KLAVNYGFELDITVSTALMDMYLKCFSPENA 361
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
IE+F M +DV +W+ L G A G A +S+ +F M RP I V +L A S
Sbjct: 362 IELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSEL 421
Query: 384 GKVEEG 389
G V++
Sbjct: 422 GIVQQA 427
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 6/183 (3%)
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS---VGERPDD 268
YA+ + A++LF E P + V WNA++ Y L G + L +F +M + ERPD+
Sbjct: 46 YARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDN 105
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
T+ L +C+ L LE+GK +H L + + G+ALI++Y+KCG + A++VF
Sbjct: 106 YTVSIALKSCSGLQKLELGKMIHGFLKKKID--SDMFVGSALIELYSKCGQMNDAVKVFT 163
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVE 387
DV W+++I G +G E ++A F M L +V P +T V AC+
Sbjct: 164 EYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFN 223
Query: 388 EGK 390
G+
Sbjct: 224 LGR 226
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 8/200 (4%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINY 57
NR + R +NL KQI L GF D S+AL ++ Y AI
Sbjct: 306 NRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDM-YLKCFSPENAI-- 362
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
++F ++ + D + + G A+ ++ ++ M +P+ +L A +
Sbjct: 363 --ELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSE 420
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L C+H + K GF+ N F+ SLI +A C ++ A+ +F G DVV WSS+
Sbjct: 421 LGIVQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSI 480
Query: 178 TAGYARRGELSMARSLFDEM 197
A Y G+ A L +M
Sbjct: 481 IAAYGFHGQGEEALKLSHQM 500
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 230/464 (49%), Gaps = 69/464 (14%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
+N A ++F + E +N +I G +A+ L +M I+ + T++ ++ A
Sbjct: 239 LNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISA 298
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C + MG +H I+K N L H+ C ++ A
Sbjct: 299 CANVGSFQMGKQMHAYILK----------NELNPNHSFCLSVSNA--------------- 333
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
L Y + ++ AR +F MPVR++++WN +++GY G ME+A F E+P ++++
Sbjct: 334 --LITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLL 391
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
+ MISG G + L++F++MR G P D LTAC+ LG LE G+++H L
Sbjct: 392 TLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQL 451
Query: 295 LDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+ + G L GNA+I MYAKCG +E A VF+ M D+ +W+++I L HG +
Sbjct: 452 VHL--GYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVK 509
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
+I +F +M + V P ITF+ VL ACSHAG VE+G+ YF M + Y I P HY
Sbjct: 510 AIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMV 569
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
+HG+++LG A ++L + G
Sbjct: 570 DLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDG 629
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
YVLLSNIYA G WN V KVRKLM D ++K+P CS IE ++K
Sbjct: 630 TYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENK 673
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 176/365 (48%), Gaps = 71/365 (19%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D+ YN +I G A + + A+ L+ M + +P+ FTF+ VL A
Sbjct: 111 DSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVL----------- 159
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG-EL 187
FV N CG ++ A V+ G + ++L + Y +R EL
Sbjct: 160 ------------FVGNE-----QQCGQMHCA-VVKTGMGCVSSSVLNALLSVYVKRASEL 201
Query: 188 SM-------ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
+ AR LFDEMP RD ++W MITGY + ++ A E+F + + +WNAMI
Sbjct: 202 GIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMI 261
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL--DMT 298
SGYV CG ++AL + +MR +G + DD+T ++++ACA++G ++GK++H +L ++
Sbjct: 262 SGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELN 321
Query: 299 SGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTW------------------- 338
+ L NALI +Y K ++ A ++F M R++ TW
Sbjct: 322 PNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSF 381
Query: 339 ------------STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
+ +I GLA +GF +E + +F++M+ P + F G L ACS G +
Sbjct: 382 FEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGAL 441
Query: 387 EEGKK 391
E G++
Sbjct: 442 ENGRQ 446
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 127/268 (47%), Gaps = 45/268 (16%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP--KRDVVSWNA 238
Y + + AR LF+E+P D ++ +IT Y G +E E+FN P RD V +NA
Sbjct: 58 YCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNA 117
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA-DLGDLEVGKKVHCTLLDM 297
MI+GY G ALE+F MR RPDD T S+L+A +G+ + ++HC ++
Sbjct: 118 MITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKT 177
Query: 298 TSGVAKVLHGNALIDMYAK--------CGSIERAIEVFLGMRDRDVSTWST--------- 340
G NAL+ +Y K C ++ A ++F M RD TW+T
Sbjct: 178 GMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRND 237
Query: 341 ----------------------LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
+I G G +E++ + R+M+ L ++ +IT+ ++
Sbjct: 238 DLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIIS 297
Query: 379 ACSHAGKVEEGKK-YFKLMRDEYNIEPN 405
AC++ G + GK+ + ++++E N PN
Sbjct: 298 ACANVGSFQMGKQMHAYILKNELN--PN 323
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 146/339 (43%), Gaps = 41/339 (12%)
Query: 26 ALVTINGFNSDSSALRELIYSGSV--------VIPGAINY-----AHKMFVKITEPDTFM 72
AL+T+ N+ R++ Y+ V ++ G +N A F ++ +
Sbjct: 333 ALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLT 392
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+I G AQ+ + + L+ QM +P F F+ L AC+ L G +H ++V
Sbjct: 393 LTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLV 452
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
G+E + V N++I +A CG + A +F +D+V+W+S+ A + G A
Sbjct: 453 HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIE 512
Query: 193 LFDEM----PVRDLVSWNVMITGYAKQGEMEKANELFNEV-------PKRDVVSWNAMIS 241
LFD+M D +++ ++T + G +EK FN + P D + M+
Sbjct: 513 LFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCED--HYARMVD 570
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
+ GM A + + M S +P +LL C G++++G ++ +
Sbjct: 571 LFCRAGMFSYARIVIDSMPS---KPGAPVWEALLAGCRIHGNMDLG-------IEAAEQL 620
Query: 302 AKVLHGN-----ALIDMYAKCGSIERAIEVFLGMRDRDV 335
K++ N L ++YA G +V MRD+ V
Sbjct: 621 FKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAV 659
>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
Length = 586
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/472 (31%), Positives = 244/472 (51%), Gaps = 77/472 (16%)
Query: 45 YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNP-LDAVFLYTQMEKCSIKP 103
Y+ S ++P A++ +F + D ++Y++++ + S +P L L + ++ P
Sbjct: 24 YAKSRLLPDALH----LFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALHP 79
Query: 104 NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF 163
+ F S V RL R +G +H V + + V++SL+ + CG +
Sbjct: 80 DHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPD------ 133
Query: 164 DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANE 223
DG R +FD M ++ V W +++GYA G E+A +
Sbjct: 134 DG-------------------------RKVFDSMSAKNSVVWTALVSGYASNGRSEEALQ 168
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT-ACADLG 282
LF +P R++ +W A+ISG V G + A+E+F EMR G R DD +LS++ A ADL
Sbjct: 169 LFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLA 228
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+G+++H + + + ++ ++ GNALIDMY+KC I A EVF G+ RDV +W+T++
Sbjct: 229 AFVLGRQLHGSAMRL-GFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMV 287
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G A HG AEE++A++ M +P E+TFVG++ ACSHAG V++G++ F+ M++EY I
Sbjct: 288 VGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGI 347
Query: 403 EPNIRHYGV---------------------------------------HGDVELGRLANK 423
P ++HY + D E+ +
Sbjct: 348 TPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISD 407
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
+LL +R +S Y+LLSN+YA G+W+ V KVRK M +I+K+PG S IEA
Sbjct: 408 KLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEA 459
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RP 266
+++ YAK + A LF+E P+RD+ ++++++ + AL + M S P
Sbjct: 20 LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALHP 79
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D + S+ + A L +G+++H + V+ ++L+DMY KCGS + +V
Sbjct: 80 DHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVK-SSLVDMYCKCGSPDDGRKV 138
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
F M ++ W+ L+ G A +G +EE++ +FR M
Sbjct: 139 FDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM 173
>gi|414589212|tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea mays]
Length = 590
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 232/448 (51%), Gaps = 71/448 (15%)
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC---GDLN 157
+ PN FTF+F+L+AC L + CVHG+IV+ GF + V+N+L+ + C GD+
Sbjct: 111 VYPNGFTFTFLLRACESLRRLFLCRCVHGQIVRCGFGSDVVVQNALLNVYYKCSDPGDVG 170
Query: 158 TASVLFD--------------------GDA-----------KMDVVAWSSLTAGYARRGE 186
A +FD GDA + +VV+W+++ A + R G+
Sbjct: 171 IARQVFDEMANRDVVSWNSIVGVYMSNGDAAGAMELFEAMPERNVVSWNTIVAAFTRAGD 230
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYA-------------------------------KQ 215
+ AR++FD MP+RD +SWN+MI+GYA K
Sbjct: 231 MVSARAVFDRMPIRDAISWNLMISGYATSGNVESAWSLFDIMDRKDVVSWTAMVSAYAKI 290
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSL 274
GE++ A LF+++P +++VSWNAMI+GY AL F++M G PD+ T++S+
Sbjct: 291 GELDSARVLFDQMPDKNLVSWNAMITGYNHNLRYDDALCTFQQMMLEGRFMPDEATLVSV 350
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD 334
++ACA LG +E + + + + L GNAL+DM+AKCG + RA VF M+ R
Sbjct: 351 VSACAQLGSVEYCNWISSYISKSNTHITVAL-GNALVDMFAKCGDVGRAHLVFNKMKTRC 409
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK 394
TW+T+I G A++G E++ ++ +M R V + FV L AC+H G ++EG F
Sbjct: 410 TITWTTMISGFAYNGQFREALLVYNDMCREGVTLDDTVFVAALGACAHGGLLQEGWSIFN 469
Query: 395 LMRDEYNIEPNIRHYG----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
M + I P + HYG + G EL + +++ M S VL+SN A G W+
Sbjct: 470 QMVEYCRIVPRMEHYGCIVDLLGRAELSEYVSTKIVEMEPFNSSYQVLVSNCSALEGRWD 529
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDK 478
V R+ M D ++K PG SLI+ ++
Sbjct: 530 SVMDARRTMRDCGVEKTPGSSLIQVGNE 557
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC---GS 319
G P+ T LL AC L L + + VH ++ G + V+ NAL+++Y KC G
Sbjct: 110 GVYPNGFTFTFLLRACESLRRLFLCRCVHGQIVRCGFG-SDVVVQNALLNVYYKCSDPGD 168
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
+ A +VF M +RDV +W++++G +G A ++ +F M V +++ ++ A
Sbjct: 169 VGIARQVFDEMANRDVVSWNSIVGVYMSNGDAAGAMELFEAMPERNV----VSWNTIVAA 224
Query: 380 CSHAGKVEEGKKYFKLM--RDEYNIEPNIRHYGVHGDVE 416
+ AG + + F M RD + I Y G+VE
Sbjct: 225 FTRAGDMVSARAVFDRMPIRDAISWNLMISGYATSGNVE 263
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 216/422 (51%), Gaps = 78/422 (18%)
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVH 128
TF++N +IR SA S +P + ++ + + P+ FTF + K+ ++ + G VH
Sbjct: 57 TFLHNLLIRASAASPSPRLSFAAFSSLLRSGHLPDHFTFPPLAKSASKFPSFPRTGAQVH 116
Query: 129 GKIVKYGFEFNRFVRNSLIYFHA--------------------------------NCGDL 156
+ + G + F NSL+ +A CG+L
Sbjct: 117 AQAARRGLLADAFAVNSLLAMYAALRDAASMRGVLESCAEAADVVSWNTVVAGYARCGEL 176
Query: 157 NTASVLFDG---------------------------------DAKMDVVAWSSLTAGYAR 183
A FDG A VV W+S+ AG AR
Sbjct: 177 GNARRAFDGMPRRNGASWSAMVGAYAAAGQLDVARDMFDRAPAAGRSVVTWNSMVAGLAR 236
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G L +AR +FDEMP R+LVSWN M+ GYA G+++ A ELF+ +P++DVVSW M+SGY
Sbjct: 237 HGLLPLARKMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGY 296
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC------TLLDM 297
G + QALE+F M+S RP++VTM+S+ +ACA L L+ G+ H +LD
Sbjct: 297 ARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDD 356
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
+ G ALIDMYAKCG + A +VF + ++VS W+ LI GLA +G A I +
Sbjct: 357 GFNL-----GAALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDV 411
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVEL 417
F +M+ +P +TFV VL AC+ AG V+EG++ F+ M + ++P ++HYG D+ L
Sbjct: 412 FEQMKVSDEKPDSVTFVSVLAACARAGLVDEGRRCFRSMSSGFGVQPELKHYGCMVDL-L 470
Query: 418 GR 419
GR
Sbjct: 471 GR 472
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 48/246 (19%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRD-- 201
N+++ +A GD++ A LFD + DVV+W+ + +GYAR G + A LF M D
Sbjct: 259 NAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVR 318
Query: 202 -----LVS---------------WN-------------------VMITGYAKQGEMEKAN 222
+VS W +I YAK G + A
Sbjct: 319 PNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYAKCGRPDVAA 378
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
++F + +++V +WNA+I+G G ++ +++FE+M+ E+PD VT +S+L ACA G
Sbjct: 379 KVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPDSVTFVSVLAACARAG 438
Query: 283 DLEVGKKVHCTLLDMTSGVA---KVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTW 338
++ G++ M+SG ++ H ++D+ + G ++ A E+ GM D
Sbjct: 439 LVDEGRR---CFRSMSSGFGVQPELKHYGCMVDLLGRAGLVDEAEELVRGMPMAPDDKVL 495
Query: 339 STLIGG 344
+TL+G
Sbjct: 496 ATLLGA 501
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 18/239 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A ++F + E D + ++ G A++ A+ L+ M+ ++PN+ T V
Sbjct: 269 GDVDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVF 328
Query: 113 KACTRLLYRNMGFCVHGKIVKYGF----EFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168
AC RL G H I K G FN + +LI +A CG + A+ +F +
Sbjct: 329 SACARLAALKEGRWAHAFIGKRGMVLDDGFN--LGAALIDMYAKCGRPDVAAKVFRSLDR 386
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANEL 224
+V AW++L AG A G+ +F++M V D V++ ++ A+ G +++
Sbjct: 387 KNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPDSVTFVSVLAACARAGLVDEGRRC 446
Query: 225 FNEVP-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
F + + ++ + M+ G+ +A E+ +R + PDD + +LL AC
Sbjct: 447 FRSMSSGFGVQPELKHYGCMVDLLGRAGLVDEAEEL---VRGMPMAPDDKVLATLLGAC 502
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 11/201 (5%)
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D + SLL A L D + V L+ + A V+ N ++ YA+CG + A
Sbjct: 127 DAFAVNSLLAMYAALRDAASMRGV----LESCAEAADVVSWNTVVAGYARCGELGNARRA 182
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F GM R+ ++WS ++G A G + + MF + +T+ ++ + G +
Sbjct: 183 FDGMPRRNGASWSAMVGAYAAAGQLDVARDMFDRAP--AAGRSVVTWNSMVAGLARHGLL 240
Query: 387 EEGKKYFKLM--RDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
+K F M R+ + +R Y V+GDV+ R + M + + + + + YA
Sbjct: 241 PLARKMFDEMPARNLVSWNAMVRGYAVNGDVDGAR---ELFDAMPEKDVVSWTCMVSGYA 297
Query: 445 SRGEWNRVEKVRKLMDDSDIK 465
G + ++ + M D++
Sbjct: 298 RAGRHAQALELFRTMQSGDVR 318
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 207/370 (55%), Gaps = 40/370 (10%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N ++ + + GD A ++F D +W+ + +G+ + GEL A+ FD MP ++++
Sbjct: 233 NVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVI 292
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SW +M+ GY K G+ A LF+++P +++V+W+ MI GY G +ALE+FE +
Sbjct: 293 SWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQD 352
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
+PD+ +L +++AC+ LG ++ + + + S ++ + +LIDMYAKCGSIE+A
Sbjct: 353 IKPDETFILGIISACSQLGIIDAAESIIHNYVG-PSLLSDLRVFTSLIDMYAKCGSIEKA 411
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+++F +D+ +ST+I LA HG ++I +F +MQR ++P +TF+GVL AC+H
Sbjct: 412 LQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHG 471
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G V+EG+KYFK M +E+ I+P+ +HY
Sbjct: 472 GLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGA 531
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
VH +V+L +A L + D SG+Y+LLSNIYA+ G W V KVR + + +
Sbjct: 532 LLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRV 591
Query: 465 KKQPGCSLIE 474
+K G S IE
Sbjct: 592 RKNRGSSWIE 601
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 202/379 (53%), Gaps = 16/379 (4%)
Query: 15 CTNLRTLKQIQALVTI-NGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
C L++LK I A + I + S + +L+ S GA +YAHK+F +IT+P+ +++
Sbjct: 12 CKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRF--GATDYAHKVFDEITQPNAYLW 69
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
++I G +++ +A L+ QM + I FT S VLKA RL G V+G ++K
Sbjct: 70 TSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLK 129
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
YGF F+ V+NS++ C ++TA FD + D+V+W+ + +GY + +AR
Sbjct: 130 YGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKF 189
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FD MP R++VSW MI GY K G+M +A LF+ +P +D+ SWN M+SGY+ G A
Sbjct: 190 FDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNAR 249
Query: 254 EMFEEMRSVGERP--DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
+F G+ P D + +++ G+LE K + + V+ ++
Sbjct: 250 IIF------GKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPN-----KNVISWGIML 298
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
D Y K G A +F M +++ TWST+IGG A +G +++ +F + ++P E
Sbjct: 299 DGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDET 358
Query: 372 TFVGVLVACSHAGKVEEGK 390
+G++ ACS G ++ +
Sbjct: 359 FILGIISACSQLGIIDAAE 377
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 132/308 (42%), Gaps = 29/308 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G N A +F ++ + ++T+I G A++ PL A+ L+ + ++ IKP++ ++
Sbjct: 305 GDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGII 364
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC++L + + V + V SLI +A CG + A +F+ D++
Sbjct: 365 SACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLL 424
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+S++ A A G A LFD+M D V++ ++T G +++ + F ++
Sbjct: 425 CYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQM 484
Query: 229 PKRDVVSWNAMISGYV--LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+ + + V L G E + +R++ P V +LL AC
Sbjct: 485 TEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAAC-------- 536
Query: 287 GKKVHCTLLDMTSGVAKVLH------GNALI--DMYAKCGSIERAIEVFLGMRDRDV--- 335
+VHC + A++ GN ++ ++YA G +V +R+ V
Sbjct: 537 --RVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKN 594
Query: 336 --STWSTL 341
S+W L
Sbjct: 595 RGSSWIEL 602
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 95/234 (40%), Gaps = 28/234 (11%)
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
+L ++ C L L K +H LL +S + N L+ +Y++ G+ + A +VF +
Sbjct: 5 ILHIIHNCKTLKSL---KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEI 61
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ W++LI G + +E+ ++F +M+R + T VL A + + + G+
Sbjct: 62 TQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQ 121
Query: 391 KYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESG----------DYVLLS 440
+ + YG D+ + + RK ++ D V +
Sbjct: 122 AVYGF----------VLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWN 171
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPG-----CSLIEADDKAFLQYLFNLKP 489
+ + G +RV+ RK D + C ++A D A Q LF+ P
Sbjct: 172 MMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMP 225
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 160/515 (31%), Positives = 238/515 (46%), Gaps = 79/515 (15%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVK 64
R + L C LR ++ A G + D + L Y+ S ++ +
Sbjct: 37 RVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAAS----DRLDLTVTLLRL 92
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+P T Y + I + L A+ L ++M + P T S L AC L +G
Sbjct: 93 TPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGL---ALG 149
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H K + +V +L+ YAR
Sbjct: 150 RALHAYAFKLALAGDSYVATALLGM-------------------------------YARG 178
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G+ AR+LFDEMP +V M+T YAK G ++ A ELF+ +P +D + WNAMI GY
Sbjct: 179 GDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYT 238
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G +AL +F M G PD+V ++ L+A A LG E G+ +H + +
Sbjct: 239 QHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNA 298
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
G ALIDMY KCGS+E A+ VF + D+D+ W+ +I G A HG + +++ MF +++
Sbjct: 299 RVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQ 358
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------- 410
+ PT+ITF+G+L ACSH+G V+EG ++F+ M +EY I P I HYG
Sbjct: 359 GLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEE 418
Query: 411 -------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
+H ++ LG+ L+ SG Y+LLSNIYA+
Sbjct: 419 AFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAA 478
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
G W V +VR +M S I+K+PGCS IE K +
Sbjct: 479 VGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVY 513
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 160/515 (31%), Positives = 238/515 (46%), Gaps = 79/515 (15%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVK 64
R + L C LR ++ A G + D + L Y+ S ++ +
Sbjct: 36 RVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAAS----DRLDLTVTLLRL 91
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+P T Y + I + L A+ L ++M + P T S L AC L +G
Sbjct: 92 TPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGL---ALG 148
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H K + +V +L+ YAR
Sbjct: 149 RALHAYAFKLALAGDSYVATALLGM-------------------------------YARG 177
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G+ AR+LFDEMP +V M+T YAK G ++ A ELF+ +P +D + WNAMI GY
Sbjct: 178 GDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYT 237
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G +AL +F M G PD+V ++ L+A A LG E G+ +H + +
Sbjct: 238 QHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNA 297
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
G ALIDMY KCGS+E A+ VF + D+D+ W+ +I G A HG + +++ MF +++
Sbjct: 298 RVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQ 357
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------- 410
+ PT+ITF+G+L ACSH+G V+EG ++F+ M +EY I P I HYG
Sbjct: 358 GLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEE 417
Query: 411 -------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
+H ++ LG+ L+ SG Y+LLSNIYA+
Sbjct: 418 AFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAA 477
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
G W V +VR +M S I+K+PGCS IE K +
Sbjct: 478 VGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVY 512
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 150/435 (34%), Positives = 221/435 (50%), Gaps = 81/435 (18%)
Query: 93 YTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHAN 152
Y +M + + FT FVLK+C L MG CVHG+ ++ G E + +V SLI +
Sbjct: 95 YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 154
Query: 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY 212
CG + GDA R LFD+M VRD+ SWN +I GY
Sbjct: 155 CGVI--------GDA-----------------------RKLFDKMIVRDMASWNALIAGY 183
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE--RPDDVT 270
K+GE+ A +LF + R++VSW AMISGY G +QAL +F+EM G +P+ VT
Sbjct: 184 MKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVT 243
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN---ALIDMYAKCGSIERAIEVF 327
++S+L ACA LE G+++H D +G+ L+ + AL MYAKC S+ A F
Sbjct: 244 IVSVLPACAQSAALERGRRIH----DFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCF 299
Query: 328 --LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+ +++ W+T+I A HG E++++F M R V+P +TF+G+L CSH+G
Sbjct: 300 DMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGL 359
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYGV---------------------------------- 411
++ G +F M +++EP + HY
Sbjct: 360 IDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALL 419
Query: 412 -----HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
H ++E+ LA +RL + D SG+YVLLSN+YA G W V+K+R L+ +KK
Sbjct: 420 AACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKK 479
Query: 467 QPGCSLIEADDKAFL 481
PGCS IE + K+ L
Sbjct: 480 SPGCSWIEINGKSHL 494
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 157/515 (30%), Positives = 239/515 (46%), Gaps = 112/515 (21%)
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I + P +A+ +Y Q+ K + + F VLKAC ++ + +G +HG ++
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K G + + FV N+L+ + C + A ++FD + DVV+WS++ +R E MA
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211
Query: 193 LFDE---MPVRD--------------------------------------LVSWNVMITG 211
L E M VR + + ++
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISG----------------------------- 242
YAK G + A +LFN + ++ VVSW AMI+G
Sbjct: 272 YAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAML 331
Query: 243 --YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
Y QA +F++MR+ G RP VT++SLL+ CA G L++GK VH + +D
Sbjct: 332 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVH-SYIDKERV 390
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ AL+DMYAKCG I A +F+ RD+ W+ +I G A HG+ EE++ +F E
Sbjct: 391 EVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAE 450
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M+R V+P +ITF+G+L ACSHAG V EGKK F+ M + + P I HYG
Sbjct: 451 MERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAG 510
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
+H + +LG LA +LL + + G VL+SN
Sbjct: 511 LLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSN 570
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
IYA+ W+ VRK M +KK+PG S+IE +
Sbjct: 571 IYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVN 605
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 153/495 (30%), Positives = 243/495 (49%), Gaps = 93/495 (18%)
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
PD FM I S L ++ I+ + F +LK C ++ +
Sbjct: 26 PDWFMTRMSIHDSCHGW----IYVLEMKLRALKIREMEDMFVPILKDCPNIVELKK---I 78
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H IVK+ + F+ ++ + G+ A++LF G A + ++++ Y
Sbjct: 79 HAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVY 138
Query: 188 SMARSLFDEM--------PV------------------------------------RDLV 203
+A +++ +M P+ + V
Sbjct: 139 VLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTV 198
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRD--VVSWNAMISGYVLCGMNKQALEMFEEMRS 261
N ++ Y K ++ A+ +F E+ +RD + SW A++SGY G ALE F M+
Sbjct: 199 VENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQM 258
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
VG PD+++++S+L CA LG LE+GK +H D + + NALI+MYAKCGSI+
Sbjct: 259 VGIEPDEISLVSVLPDCAQLGALELGKWIH-IYADKAGFLRNICVCNALIEMYAKCGSID 317
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
+ +F M++RDV +WST+I GLA HG A E+I +F+EMQ+ K+ P+ ITFVG+L AC+
Sbjct: 318 QGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACA 377
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------------------------ 411
HAG + EG +YF+ M+ +YNIEP + HYG
Sbjct: 378 HAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIW 437
Query: 412 ---------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462
HG++++ +A + LL + ++G+YVLLSN+YA G+W+ V ++RKLM
Sbjct: 438 GSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSK 497
Query: 463 DIKKQPGCSLIEADD 477
+KK PGCS IE D+
Sbjct: 498 SMKKTPGCSSIEVDN 512
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/436 (27%), Positives = 208/436 (47%), Gaps = 54/436 (12%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
K C N+ LK+I A + + S + +++ + G YA+ +F + +P+ F+
Sbjct: 67 KDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHY--GETEYANLLFKGVADPNAFL 124
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQM-----EKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
YN +IR ++ + A+ +Y QM + I P+KFTF FV+K+C L+ ++G V
Sbjct: 125 YNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQV 184
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD--VVAWSSLTAGYARRG 185
HG + K+G + N V NSL+ + C L+ A +F+ + D + +W+++ +GYAR G
Sbjct: 185 HGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIG 244
Query: 186 ELSMARSLFDEMP---------------------------------------VRDLVSWN 206
+ A F M +R++ N
Sbjct: 245 CYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCN 304
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
+I YAK G +++ LF+++ +RDV+SW+ MI G G ++A+E+F+EM+ P
Sbjct: 305 ALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEP 364
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
+T + LLTACA G L G + ++ + V H L+++ G +++A+E+
Sbjct: 365 SIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALEL 424
Query: 327 FLGM-RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA-- 383
M R D W +L+ HG IA+ L++ P + T VL++ +A
Sbjct: 425 VKKMPRKPDSPIWGSLLSSCRSHG--NLKIAVIAMEHLLELEPAD-TGNYVLLSNLYADL 481
Query: 384 GKVEEGKKYFKLMRDE 399
GK + + KLMR +
Sbjct: 482 GKWDGVSRMRKLMRSK 497
>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 225/401 (56%), Gaps = 43/401 (10%)
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVR-NSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
R L+ + FC G V N++I + G++ A LFD + D ++W
Sbjct: 211 ARKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFDQMMERDTISW 270
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+++ +GY ++ A LF EMP D+ SWN MI G+A+ G++++ N+LF +P++++V
Sbjct: 271 NTMISGYVNMLDMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLV 330
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
SWN++I+GY A+++F +M+ GE+PD T+ S+L+ A + DL++G ++H
Sbjct: 331 SWNSVITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQ-- 388
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEE 353
L + + V NALI MY++CG+I A +F ++ ++V +W+ +IGG A HG+A E
Sbjct: 389 LVTKTVIPDVPINNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIGGYASHGYAVE 448
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
++ +F+ M+ VRPT ITF+ VL AC+HAG VEEG++ F+ M DE+ IEP++ HY
Sbjct: 449 ALEVFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADEFGIEPSVEHYASLV 508
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
VH +E+ R+A + L+ + D S
Sbjct: 509 DIMSRHGQLEQALDLINSMPFEPDKAVWGALLSAAKVHNKIEVARVAAEALIRLEPDSSA 568
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
YVLL N+YA G+W+ +VR +M+ S+IKKQ S +++
Sbjct: 569 PYVLLYNMYADVGQWDSAAEVRIMMERSNIKKQAAYSWVDS 609
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 123/248 (49%), Gaps = 45/248 (18%)
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMIT 210
A G ++ A LFD + + V+W+++ Y +R E++ AR LFDEMP RD+VSWN+MI+
Sbjct: 8 AKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIVSWNLMIS 67
Query: 211 GYAK-QGE--MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
GY G +++ LF+ +P+RD+VSWN MISGY G +AL MF+ M P+
Sbjct: 68 GYVSCHGIRFLKEGRNLFDRMPERDIVSWNTMISGYAKNGRMDEALRMFKLM------PE 121
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
GD V+ NA++ + + G + RAIE F
Sbjct: 122 --------------GD--------------------VVSWNAIVTGFLQNGDVARAIEYF 147
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI--TFVGVLVACSHAGK 385
M +RD ++ S L+ GL +G +E+ + +R R + + ++ +
Sbjct: 148 ERMPERDAASLSALVSGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLIAGYGRRDR 207
Query: 386 VEEGKKYF 393
V+E +K F
Sbjct: 208 VDEARKLF 215
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 130/273 (47%), Gaps = 52/273 (19%)
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE---LSMARSL 193
E N N++I + ++ A LFD + D+V+W+ + +GY L R+L
Sbjct: 25 ETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIVSWNLMISGYVSCHGIRFLKEGRNL 84
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FD MP RD+VSWN MI+GYAK G M++A +F +P+ DVVSWNA+++G++ G +A+
Sbjct: 85 FDRMPERDIVSWNTMISGYAKNGRMDEALRMFKLMPEGDVVSWNAIVTGFLQNGDVARAI 144
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV-----------------HCTLL- 295
E FE M ER D ++ +L++ G+L+ +V + TL+
Sbjct: 145 EYFERM---PER-DAASLSALVSGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLIA 200
Query: 296 -----DMTSGVAK----------------------VLHGNALIDMYAKCGSIERAIEVFL 328
D K V+ N +I Y K G+I A E+F
Sbjct: 201 GYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFD 260
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
M +RD +W+T+I G +E+ +F EM
Sbjct: 261 QMMERDTISWNTMISGYVNMLDMDEASRLFCEM 293
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 135/295 (45%), Gaps = 20/295 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ + +F ++ + + +N++I G ++ + + A+ ++ QM+ KP++ T S VL
Sbjct: 312 GDLDRVNDLFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVL 371
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKMDV 171
++ +G +H + K + + N+LI ++ CG + A +FD + +V
Sbjct: 372 SVSAGIVDLQLGMQIHQLVTKTVIP-DVPINNALITMYSRCGAIIEAGTIFDEVKLQKEV 430
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNE 227
++W+++ GYA G A +F M D+ +++ ++ A G +E+ E+F
Sbjct: 431 ISWNAMIGGYASHGYAVEALEVFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFES 490
Query: 228 VPKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ V + +++ G +QAL++ M PD +LL+A
Sbjct: 491 MADEFGIEPSVEHYASLVDIMSRHGQLEQALDLINSMPF---EPDKAVWGALLSAAKVHN 547
Query: 283 DLEVGKKVHCTL--LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+EV + L L+ S VL L +MYA G + A EV + M ++
Sbjct: 548 KIEVARVAAEALIRLEPDSSAPYVL----LYNMYADVGQWDSAAEVRIMMERSNI 598
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 157/549 (28%), Positives = 258/549 (46%), Gaps = 95/549 (17%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFV-KITEPDTFMY 73
NL KQ+ +L+ GF+ ++ LI YS G + A +F E + F Y
Sbjct: 26 NLNKGKQLHSLMITYGFSPSPPSITSLINMYSKC----GQMGEAILVFYDPCHERNVFAY 81
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
N II G + Y +M + P+K+TF V++ C ++ +HG ++K
Sbjct: 82 NAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKK---IHGCLLK 138
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
G E + FV ++L+ + G + A +F + DVV W+++ GYA+ G L A +
Sbjct: 139 MGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEV 198
Query: 194 FDEMPVRDLVSWNVMITG----YAKQGEMEKANE-------------------------- 223
F M V+ + ITG +A +G+++
Sbjct: 199 FRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGK 258
Query: 224 ---------LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
+F + ++D+ SWN++IS + CG + L +F++M G PD VT+ ++
Sbjct: 259 CKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTV 318
Query: 275 LTACADLGDLEVGKKVHCTLL-------DMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
L AC+ L L G+++H ++ D V +L NA++DMYAKCGS+ A+++F
Sbjct: 319 LPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIF 378
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
M +DV++W+ +I G HG+A E++ MF +M + +P E+T VGVL AC+HAG V
Sbjct: 379 DSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVS 438
Query: 388 EGKKYFKLMRDEYNIEPNIRHYG------------------------------------- 410
G+ + M + + P I HY
Sbjct: 439 HGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGA 498
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
+HG+ EL +A +++L + + G YVL+SN+Y G + V +VRK M + ++KK P
Sbjct: 499 CRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTP 558
Query: 469 GCSLIEADD 477
GCS IE D
Sbjct: 559 GCSWIELKD 567
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 259 MRSVGERPDDVT-MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG-NALIDMYAK 316
M S + ++VT ++ L +CAD +L GK++H ++ T G + +LI+MY+K
Sbjct: 1 MLSAIQMLNNVTKCVAFLQSCADHQNLNKGKQLHSLMI--TYGFSPSPPSITSLINMYSK 58
Query: 317 CGSIERAIEVFLG-MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
CG + AI VF +R+V ++ +I G +G A + +++M+ V P + TF
Sbjct: 59 CGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPC 118
Query: 376 VLVACSHAGKVEE 388
V+ C +V++
Sbjct: 119 VVRTCCEVMEVKK 131
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/469 (31%), Positives = 236/469 (50%), Gaps = 75/469 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F ++ ++N +I G S ++A L+ +M + ++FTF+ VL
Sbjct: 242 GDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVL 301
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEF----NRFVRNSLIYFHANCGDLNTASVLFDGDAK 168
AC + G VHG+I++ F V N+L+ F++ CG++
Sbjct: 302 SACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNI------------ 349
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV 228
++AR +FD M ++D+VSWN +++GY + ++KA E+F E+
Sbjct: 350 -------------------AVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEM 390
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
P ++ +SW M+SGYV G + AL++F +MRS +P D T + AC +LG L+ GK
Sbjct: 391 PYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGK 450
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
++H ++ + + GNALI MYA+CG+++ A +FL M + D +W+ +I L H
Sbjct: 451 QLHGHIVQLGFEGSNSA-GNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQH 509
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH 408
G E++ +F M + P I+F+ VL AC+H+G V+EG +YF+ M+ ++ I P H
Sbjct: 510 GHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDH 569
Query: 409 YG---------------------------------------VHGDVELGRLANKRLLNMR 429
Y GD+ELG A +L M
Sbjct: 570 YTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMT 629
Query: 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G Y+LLSN Y++ G W +VRKLM D +KK+PGCS IEA +K
Sbjct: 630 PQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNK 678
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 197/427 (46%), Gaps = 72/427 (16%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
+ H + RL T R L L + +++L Y+ + +P A+++ V
Sbjct: 58 HPHLTLRLIHLYTLSRDLPAAATLFCADPCPVSATSLVA-AYAAADRLPAAVSFFDA--V 114
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLY-TQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
DT ++N +I A++ + AV ++ + + S++P+ ++F+ +L A L +
Sbjct: 115 PPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNIS 174
Query: 123 MGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+ C +H ++K G V N+L+ + C +A D
Sbjct: 175 VRHCAQLHCSVLKSGAGGALSVCNALVALYMKCES---------PEATRD---------- 215
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
AR + DEMP +D ++W M+ GY ++G++ A +F EV + V WNAMI
Sbjct: 216 ---------ARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMI 266
Query: 241 SGYVLCGMNKQALEMFEEMRSVGER-P-DDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
SGYV GM +A E+F M V ER P D+ T S+L+ACA++G GK VH ++ +
Sbjct: 267 SGYVHSGMAVEAFELFRRM--VLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQ 324
Query: 299 SGV---AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST--------------- 340
A + NAL+ Y+KCG+I A +F M +DV +W+T
Sbjct: 325 PNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAV 384
Query: 341 ----------------LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
++ G GFAE+++ +F +M+ V+P + T+ G + AC G
Sbjct: 385 EVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELG 444
Query: 385 KVEEGKK 391
++ GK+
Sbjct: 445 ALKHGKQ 451
>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
Length = 545
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 154/536 (28%), Positives = 251/536 (46%), Gaps = 76/536 (14%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSAL-RELIYSGSVVIPGAINYAHKMFVKITE 67
+ L +C R L Q+ A + G ++ + L R ++ P + + V +
Sbjct: 13 ATLLGRCRTARCLAQLHARIVRLGLHNHHALLARFAAACDTLSCPSVVASLLSVAVPVR- 71
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
+ N ++ A+ DA+ + + + +P+ F+F +L AC R G +
Sbjct: 72 ----LRNAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASL 127
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCG-------------------------------DL 156
H ++ G + + FVR +LI F+ CG D+
Sbjct: 128 HAAAIRLGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDI 187
Query: 157 NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG 216
TA LFD +VV W+++ GY + G+L AR LFDEMP R ++ +I GY G
Sbjct: 188 LTARELFDQIPHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAG 247
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
M A LF+++ RD+ +W+ MISG G +AL +F E + PD++ ++ L++
Sbjct: 248 NMGAARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMS 307
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
AC+ LG++ + + + ++ + V LI+M AKCG++ERA +F M RDV
Sbjct: 308 ACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVF 367
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
++ +++ G HG A +++ +F +M + P F VL ACSHAG VEEGK+YF +M
Sbjct: 368 SYCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMM 427
Query: 397 RDEYNIEPNIRHYGV---------------------------------------HGDVEL 417
++EY I P+ HY H D+EL
Sbjct: 428 KNEYMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCDIEL 487
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
G++A K+L + + +G+YV LSNIYA+ W V + R M I K GC+L+
Sbjct: 488 GKIAAKKLFEIEPENAGNYVSLSNIYANIDRWGNVSETRAEMTGRGITKIAGCTLV 543
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 152/508 (29%), Positives = 257/508 (50%), Gaps = 49/508 (9%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C + +L+ + A + G S A + + S + P +Y+ +F E + F+ N
Sbjct: 39 CKDTASLRHVHAQILRRGVLSSRVAAQLVSCSSLLKSP---DYSLSIFRNSEERNPFVLN 95
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
+IRG ++ +V + M + +KP++ TF FVLK+ ++L +R +G +H +K
Sbjct: 96 ALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKN 155
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLF----DGDAKMDVVAWSSLTAGYARRGELSMA 190
+ + FVR SL+ +A G L A +F D K ++ W+ L GY R ++ MA
Sbjct: 156 FVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMA 215
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
+LF MP R+ SW+ +I GY GE+ +A +LF +P+++VVSW +I+G+ G +
Sbjct: 216 TTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYE 275
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
A+ + EM G +P++ T+ ++L+AC+ G L G ++H +LD + + + G AL
Sbjct: 276 TAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAI-GTAL 334
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMYAKCG ++ A VF M +D+ +W+ +I G A HG ++I FR+M +P E
Sbjct: 335 VDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDE 394
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLA--------- 421
+ F+ VL AC ++ +V+ G +F MR +Y IEP ++HY + D+ LGR
Sbjct: 395 VVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDL-LGRAGKLNEAHELV 453
Query: 422 -------------------------------NKRLLNMRKDESGDYVLLSNIYASRGEWN 450
++ LL + + G Y+ L +AS+G
Sbjct: 454 ENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQ 513
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDK 478
VEK R + ++ G S IE D +
Sbjct: 514 DVEKRRLSLQKRIKERSLGWSYIELDGQ 541
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD+ +SL+ AC D L + VH +L GV L+ + S + ++
Sbjct: 27 PDESHFISLIHACKDTASL---RHVHAQIL--RRGVLSSRVAAQLVSCSSLLKSPDYSLS 81
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
+F +R+ + LI GL + E S+ F M RL V+P +TF VL + S G
Sbjct: 82 IFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLG 140
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 214/372 (57%), Gaps = 40/372 (10%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
+V G + YA ++F ++ P+TF YNT+IRG A+S P ++ L QM + + P++F
Sbjct: 5 AAVSPSGDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPDEF 64
Query: 107 TFSFVLKACTRL---LYRNMGFCV-----HGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158
TF+F++KA +R+ + RN+ V HG ++K GF + FVRN+LI+
Sbjct: 65 TFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHL--------- 115
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEM 218
YA RG +A +FDE D+VSW+ ++ + + GE+
Sbjct: 116 ----------------------YAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGEL 153
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
E+A +F+++P+RDVVSW M+S Y +++ALE++ M G RPD+VT++S+++AC
Sbjct: 154 ERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISAC 213
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
+LGDL++G VH + +D V NALIDMYAKCG ++RA +VF M + + TW
Sbjct: 214 TNLGDLQMGYSVH-SYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVTW 272
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+++I A + E++ +F M V P +TF+ VL A +H G V+EG + F+ M+
Sbjct: 273 NSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQR 332
Query: 399 EYNIEPNIRHYG 410
++ IE I HYG
Sbjct: 333 DHGIEARIEHYG 344
>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 631
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 156/486 (32%), Positives = 233/486 (47%), Gaps = 118/486 (24%)
Query: 101 IKPNKFTFSFVLKACTRL-LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC------ 153
+ PN FTF+F+L+AC L L R G CVHG+IV+ GF + FV+N+L+ + C
Sbjct: 107 VPPNGFTFTFLLRACALLGLPRPCG-CVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGG 165
Query: 154 ------------------------------GDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
GD A F+ + +VV+W+++ AG+AR
Sbjct: 166 GVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFAR 225
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA---------------------- 221
G++ AR++FD MP R+ VSWN+MI+GYA G++E A
Sbjct: 226 MGDMVTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAY 285
Query: 222 ---------NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTM 271
NELF+ +P +++VSWNAMI+GY +AL F+ M G RPD+ T+
Sbjct: 286 AKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATL 345
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGNALIDMYAKCGSIERAIEVF 327
+S+++ACA LG +E +C + G + V GNALIDM+AKCG + RA +F
Sbjct: 346 VSVVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIF 400
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
M R + TW+T+I G AF+G +++ ++ M R V+ + F+ L AC+H G ++
Sbjct: 401 YKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQ 460
Query: 388 EGKKYFKLMRDEYNIEPNIRHYG------------------------------------- 410
EG F M + YNI+P + HYG
Sbjct: 461 EGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCS 520
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
HG+ EL +K++ + S VL+SN A G W+ V R M + I+K P
Sbjct: 521 CVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVP 580
Query: 469 GCSLIE 474
G S I+
Sbjct: 581 GSSSIQ 586
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/460 (31%), Positives = 232/460 (50%), Gaps = 73/460 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F +I D + TII G + + +A+ +Y M +PN ++
Sbjct: 278 GFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLI 337
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C R + G + +VK GF+ F+++++I+ +A CG +N A + F +K +V
Sbjct: 338 SGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVA 397
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
SWN +I GY + +++A ELFNE+P+RD
Sbjct: 398 -------------------------------SWNALIAGYVRNRMIDRAMELFNEMPERD 426
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
V SW+ MISGY ALE+F +M + G +P++VTM+S+L+A A G L+ G+ H
Sbjct: 427 VFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHE 486
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHGF 350
+ + + V+ L A+IDMYAKCGSI A+EVF +R++ VS W+ +I GLA HG
Sbjct: 487 YVHNNSITVSDNLSA-AIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGH 545
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
A S+ +F +++R ++ ITF+GVL AC H G VE GK++F M+ E++I+P+I+HYG
Sbjct: 546 ANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLVESGKRHFMSMKSEHSIDPDIKHYG 605
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
HG+V++G A + L +
Sbjct: 606 CMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAACRTHGNVDVGERAAENLARLEPS 665
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
VLLSN+YA G+W VR+ M +++ PG S
Sbjct: 666 HGASRVLLSNMYADAGKWEDAFLVRRAMQSHRMQRLPGYS 705
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 176/370 (47%), Gaps = 65/370 (17%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++YA ++F ++ Y T+I G +Q++ AV L+ QM + PN+ T + ++
Sbjct: 146 GQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLV 205
Query: 113 KACTRLLYRNMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
A + + + C +HG ++K FE V +L+ + C L A
Sbjct: 206 SAYSH--FGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEA----------- 252
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
R+LFDEMP +++VSWNVM+ GY+K G ++ A +F +P
Sbjct: 253 --------------------RALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPN 292
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK- 289
+D+V+W +I GYV +AL M+ M S G P+DV M+ L++ C + G++
Sbjct: 293 KDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQL 352
Query: 290 --------------VHCTLLDMTSGVAK---------------VLHGNALIDMYAKCGSI 320
+ T++ + + + V NALI Y + I
Sbjct: 353 LSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMI 412
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+RA+E+F M +RDV +WST+I G + ++ +F +M ++P E+T V VL A
Sbjct: 413 DRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAI 472
Query: 381 SHAGKVEEGK 390
+ +G ++EG+
Sbjct: 473 ATSGTLKEGR 482
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 143/310 (46%), Gaps = 61/310 (19%)
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
LK C+ L+ + G +H + K G N F++NSLI + CG L A +FD + D
Sbjct: 73 LKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFDVCPRSDP 132
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
V+++ + +GY + G+L A LFDEMPV+ VS+ MI G+++ NE +N
Sbjct: 133 VSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQ-------NECWN----- 180
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
QA+E+F++MR+VG P++VT+ +L++A + G + + +H
Sbjct: 181 -------------------QAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLH 221
Query: 292 ---------------CTLLDMTSGVAKVLHGNALIDM---------------YAKCGSIE 321
LL M + ++ AL D Y+K G ++
Sbjct: 222 GLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVD 281
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A VF + ++D+ TW T+I G E++ M+R M P ++ V ++ C
Sbjct: 282 SARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCG 341
Query: 382 HAGKVEEGKK 391
+ EG++
Sbjct: 342 RTMAMTEGQQ 351
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 32/150 (21%)
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC---------- 317
++ ++S L C+D L GK++HC + G + N+LI+MY KC
Sbjct: 66 ELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQ-NSLINMYGKCGLLVDAKSIF 124
Query: 318 ---------------------GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
G ++ A E+F M + +++T+I G + + +++
Sbjct: 125 DVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVE 184
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKV 386
+F++M+ + V P E+T ++ A SH G +
Sbjct: 185 LFKQMRNVGVVPNEVTIATLVSAYSHFGGI 214
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 216/370 (58%), Gaps = 49/370 (13%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKM--DVVAWSSLTAGYARRGELSMARSLFDEMPVRD 201
++++ +A G+L+ A +FD + +VV W+S+ G+AR G L +AR +FDEMPVR+
Sbjct: 59 STMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRN 118
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
LVSWN M+ GY+ +M+ A ELF+ +P++DVVSW MISGY G + LE+F M++
Sbjct: 119 LVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQT 178
Query: 262 VGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH--GNALIDMYAKCG 318
+P++VTM+S+L+ACA+L LE G+ VH +D V + G ALIDMYAKCG
Sbjct: 179 ESNVQPNEVTMVSVLSACANLTALEEGRWVH-AFIDKHKMVLNNEYNLGAALIDMYAKCG 237
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
+ A+++F + ++VS W+ LI LA +G A +S+ F +M+R +P +ITFVGVL
Sbjct: 238 RTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLT 297
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLA----------------- 421
ACSH G V+EG++ F+ M ++P ++HYG D+ LGR
Sbjct: 298 ACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDM-LGRAGLLEEAEELIRSMPMAPD 356
Query: 422 -------------NKRL------------LNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
+KR LN+ +SG +VL+S+IYA+ G+W V + R
Sbjct: 357 VMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEAR 416
Query: 457 KLMDDSDIKK 466
+++ S I+K
Sbjct: 417 QVVQRSGIRK 426
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 50/243 (20%)
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
DVV+W+++ GY + GE+ A+ +FDEMP R+ VSW+ M+ GYA GE++ A E+F+ +P
Sbjct: 23 DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMP 82
Query: 230 K--RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
R+VV+WN+M++G+ G+ A +MF+EM
Sbjct: 83 AIGRNVVTWNSMVTGFARHGLLPLARKMFDEMP--------------------------- 115
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
V ++ NA++ Y+ ++ A E+F M ++DV +W+ +I G A
Sbjct: 116 -------------VRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQ 162
Query: 348 HGFAEESIAMFREMQ-RLKVRPTEITFVGVLVACSHAGKVEEGK-------KYFKLMRDE 399
G ++++ +FR MQ V+P E+T V VL AC++ +EEG+ K+ ++ +E
Sbjct: 163 AGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNE 222
Query: 400 YNI 402
YN+
Sbjct: 223 YNL 225
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 128/294 (43%), Gaps = 15/294 (5%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFTFSFVLKACT 116
A ++F + E D + +I G AQ+ D + L+ M+ + +++PN+ T VL AC
Sbjct: 138 ARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACA 197
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNR--FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
L G VH I K+ N + +LI +A CG + A +F+ + +V AW
Sbjct: 198 NLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAW 257
Query: 175 SSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEVP- 229
++L A G + F++M + +++ ++T + G +++ F +
Sbjct: 258 NALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMAS 317
Query: 230 ----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+ +V + M+ G+ ++A E+ +RS+ PD + +LL AC +
Sbjct: 318 TCGVQPEVKHYGCMVDMLGRAGLLEEAEEL---IRSMPMAPDVMVFGALLGACRMHKRFD 374
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
V ++V + + + + D+YA G +E ++ + W+
Sbjct: 375 VAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKWT 428
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
+GVA V+ N +I Y KCG +E A VF M R+ +WST++GG A G + + MF
Sbjct: 19 AGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMF 78
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM--RDEYNIEPNIRHYGVHGDVE 416
M + +T+ ++ + G + +K F M R+ + +R Y V+ D++
Sbjct: 79 DRMP--AIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMD 136
Query: 417 LGRLANKRLLN-MRKDESGDYVLLSNIYASRGEW-NRVEKVRKLMDDSDIK 465
R L + M + + + + + YA G + + +E R + +S+++
Sbjct: 137 GAR----ELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQ 183
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A K+F + + +N +I A + N D+V + QM++ KPN TF VL
Sbjct: 237 GRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVL 296
Query: 113 KACTRLLYRNMGFCVHGKIVKYG 135
AC+ HG +V G
Sbjct: 297 TACS-----------HGGLVDEG 308
>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
Length = 622
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 150/470 (31%), Positives = 240/470 (51%), Gaps = 61/470 (12%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
++ A +F + E + +NT++ DA L+ +M P + S+ +
Sbjct: 120 VDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRM------PVRDAGSWNILL 173
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRF-VRN-----SLIYFHANCGDLNTASVLFDGDAK 168
C G G + + F R VR+ ++I A G ++ A VLFD +
Sbjct: 174 C--------GLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPE 225
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+VV+W+++ +GYAR + A LF +MP+RD+ SWN+MITG+ + +++ A +LF+E+
Sbjct: 226 RNVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEM 285
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
PKR+V++W M++GY+ C ++ AL++F M G +P+ VT L L AC++L L G+
Sbjct: 286 PKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQ 345
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
+VH + S + + L+++YAKCG I A VF ++D+ +W+ +I A H
Sbjct: 346 QVHQMICKTPSQFDTFVE-STLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHH 404
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH 408
GF E++ +++ MQ +P + T+VG+L ACSHAG V+EG K F+ M + +I H
Sbjct: 405 GFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEH 464
Query: 409 YGV----------------------------------------HGDVELGRLANKRLLNM 428
Y HG+ +G LA K LL
Sbjct: 465 YTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEA 524
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
D +G Y LL NIYAS G+W ++R M+ +KKQPGCS IE +K
Sbjct: 525 EPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANK 574
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 143/284 (50%), Gaps = 41/284 (14%)
Query: 145 SLIYFHANCGDLNTASVLFD-GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
+++ +A G L A VLFD DA+ +VV W++L +GYAR + A +LF+ M R++V
Sbjct: 77 AMVAAYARRGMLQEARVLFDRPDARRNVVTWTALLSGYARARRVDEAEALFEGMAERNVV 136
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN M+ Y G +E A+ LFN +P RD SWN ++ G V G ++A +MFE M V
Sbjct: 137 SWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCGLVRSGSLERARKMFERM-PVR 195
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
+ TM+S L + D V L D V+ NA+I YA+ IE A
Sbjct: 196 DVMSWTTMISGLARNGSVDDAWV-------LFDAMPE-RNVVSWNAMISGYARNHRIEEA 247
Query: 324 IEVFLGMRDRDVSTWSTLIGGL--------------------------AFHGF-----AE 352
+++F M RDV++W+ +I G +G+ +E
Sbjct: 248 LDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSE 307
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
++ +F M ++P ++TF+G L ACS+ + EG++ +++
Sbjct: 308 MALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMI 351
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 14/220 (6%)
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV-PKRDVVSW 236
A A G +S AR LFD MP RD+VSW M+ YA++G +++A LF+ +R+VV+W
Sbjct: 48 VAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNVVTW 107
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
A++SGY +A +FE M ER + V+ ++L A +G +E + +
Sbjct: 108 TALLSGYARARRVDEAEALFEGM---AER-NVVSWNTMLEAYTAVGRVEDASALFNRMPV 163
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+G N L+ + GS+ERA ++F M RDV +W+T+I GLA +G +++
Sbjct: 164 RDAG-----SWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWV 218
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+F M V +++ ++ + ++EE F M
Sbjct: 219 LFDAMPERNV----VSWNAMISGYARNHRIEEALDLFTKM 254
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 23/232 (9%)
Query: 15 CTNLRTL---KQIQALV--TINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
C+NL L +Q+ ++ T + F++ + +Y+ G I A +F E D
Sbjct: 335 CSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKC----GEIRLARNVFDFSMEKD 390
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+N II A ++A+ LY M++ KPN T+ +L AC+ + G +
Sbjct: 391 LISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFE 450
Query: 130 KIVKYGFEFNRFVRNS----LIYFHANCGDLNTASVLFD--GDAKMDVVAWSSLTAGYAR 183
+VK + + VR+ L+ + G L A L WS+L G
Sbjct: 451 SMVK---DNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNS 507
Query: 184 RGELSM----ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
G S+ A+ L + P + ++ ++ YA G+ ++A E+ +E+ R
Sbjct: 508 HGNESIGDLAAKHLLEAEP-DNAGTYTLLCNIYASAGKWKEAAEIRSEMNVR 558
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 154/512 (30%), Positives = 243/512 (47%), Gaps = 72/512 (14%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
NR L +C LR L++I AL +G + ++ I+ G + A K+F
Sbjct: 13 NRSVCHHLLAQCKKLRELQRIHALAIAHGLHPHQQSVSCKIFRCYADF-GRVADARKLFD 71
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
+I PD + +++ Q N +A+ L+ ++ +P+ F L A + + +
Sbjct: 72 EIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVV 131
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G VHG I + G + V N+LI ++ CG +A
Sbjct: 132 GRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAV----------------------- 168
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
+FD M ++D V+W M+ GY K ++ A F++VP R VV+W A+I+G+
Sbjct: 169 --------KVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGH 220
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
V +ALE+F M G RP VT++ +L+ACAD+G L++G+ +H + +
Sbjct: 221 VQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASL-N 279
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
++ NAL+DMYAK G IE A VF ++ +D TW+T+I G ++++ +F++M R
Sbjct: 280 IIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLR 339
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
V P +TFV VL ACSH+G +EEG + F MR Y I+P + HYG
Sbjct: 340 AGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLLE 399
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
V G+ L +A K ++ + G YVLL N+YA
Sbjct: 400 EAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVKREPGDDGVYVLLWNMYA 459
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
S +W ++R+ M I K+PGCS IE D
Sbjct: 460 SSNKWREAREMRQQMLSLKIFKKPGCSWIEID 491
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 142/471 (30%), Positives = 234/471 (49%), Gaps = 73/471 (15%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
G+ G + A K+F + D + ++ Q++N +A+ + +M+ + ++
Sbjct: 113 GAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQL 172
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
+ VL AC + + G +H ++ N + ++LI +A+C
Sbjct: 173 ILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCA------------ 220
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+ MA L++ MP +DLVS M+ GYA+ + E A +F+
Sbjct: 221 -------------------SMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFD 261
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+P++DVVSW+AMISGY +AL +F +M+ G RPD+VTMLS+++ACA+LG L+
Sbjct: 262 GMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDK 321
Query: 287 GKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
K +H + + +G+ K+LH NALIDM+AKCG I A+ +F M ++V TW+++I
Sbjct: 322 AKWIHAFIKN--NGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAF 379
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
A HG + ++ +F +M+ V P E+TF+ +L AC HAG V EG+ F M +Y IEP
Sbjct: 380 AMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPK 439
Query: 406 IRHYG---------------------------------------VHGDVELGRLANKRLL 426
HYG +HGD++LG A K++L
Sbjct: 440 HEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKIL 499
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+ + G VLLS IY N ++VR +M + K+ G S ++ ++
Sbjct: 500 QLDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMDLNE 550
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 34/216 (15%)
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
++ YA G + A ++F+ + RDVVSW M+ Y K+AL F +M++ G
Sbjct: 110 ALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLS 169
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIE 325
D + + ++L+AC + L GK +H +L S + H +ALI++YA C S+E A +
Sbjct: 170 DQLILATVLSACGHIRHLRTGKSIHSYML--VSDILINAHLSSALINLYASCASMEMAEK 227
Query: 326 -------------------------------VFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
+F GM ++DV +WS +I G A E+
Sbjct: 228 LYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEA 287
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+++F +MQ +RP E+T + V+ AC++ G +++ K
Sbjct: 288 LSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAK 323
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
AL+ YA CG + A +VF GM RDV +W ++ +E++ F +M+ V
Sbjct: 110 ALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLS 169
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLM 396
++ VL AC H + GK M
Sbjct: 170 DQLILATVLSACGHIRHLRTGKSIHSYM 197
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 150/519 (28%), Positives = 258/519 (49%), Gaps = 84/519 (16%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S + K +L LKQ+Q+ + ++G + +L+ ++ + ++YA +F + + P
Sbjct: 28 SAVISKSRHLNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRLCN-LSYARFIFDRFSFP 86
Query: 69 DTFMYNTIIRGSAQSQNPLDAV----FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+T +Y ++ + S PL A F + + +PN F + VLK+ L
Sbjct: 87 NTHLYAAVLTAYSSSL-PLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFST 145
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
VH + K GF V+ +L++ +A SS++
Sbjct: 146 PLVHTHLFKSGFHLYVVVQTALLHSYA-----------------------SSVS------ 176
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+++AR LFDEM R++VSW M++GYA+ G++ A LF ++P+RDV SWNA+++
Sbjct: 177 -HITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACT 235
Query: 245 LCGMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL--DMTSGV 301
G+ +A+ +F M RP++VT++ +L+ACA G L++ K +H D++S
Sbjct: 236 QNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSS-- 293
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
V N+L+D+Y KCG++E A VF + ++ W+++I A HG +EE+IA+F EM
Sbjct: 294 -DVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEM 352
Query: 362 QRLK---VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
+L ++P ITF+G+L AC+H G V +G+ YF LM + + IEP I HYG
Sbjct: 353 MKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGR 412
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
+HG ++L +A K L+ + + G ++
Sbjct: 413 AGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMM 472
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+N+Y G W + RK++ + K PG S IE D++
Sbjct: 473 ANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEIDNE 511
>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 165/511 (32%), Positives = 254/511 (49%), Gaps = 80/511 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
++C L+ K+I A +LI SG V +N A + F K P+
Sbjct: 17 QRCKKLKIFKKIHA---------------QLITSGVVSNDLVVNRAAEFFAK--GPNFAD 59
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
Y A +QME P FTF VLK+C + + + G VHG I
Sbjct: 60 Y---------------ACDFLSQMED-GFLPYMFTFPAVLKSCAKFMAVDEGRQVHGVIA 103
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K F + +V NSL++F++ CG L+ AS +FD D V+W+ + +G L + +
Sbjct: 104 KMDFVCDIYVENSLVHFYSVCGSLDDASRVFDEMLVRDAVSWTGVIYP-GIKGYLILGKG 162
Query: 193 LFDEMPVRD----LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
+ + R L N ++ Y K + + ++F+E+P++D+VSW ++I G V C
Sbjct: 163 IHGLIIERGFGLGLEVSNALMDMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKF 222
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
K+ LE+F +++S G PD + + S+L+A A G L+ G+ V +D + + G
Sbjct: 223 PKEVLELFCDVQSSGIEPDGIILTSVLSARASPGALDYGRLVR-EYIDHKAIKWDIQIGT 281
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
A++DMYAKCG IE A+++F M ++V TW+ ++ GLA HG ++++ +F EM R +RP
Sbjct: 282 AVVDMYAKCGCIEMAMQIFNVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRP 341
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMR-DEYNIEPNIRHYG----------------- 410
E+TF+ L AC H G V EG++YF M+ +YN+ P + HYG
Sbjct: 342 NEVTFLVTLTACCHCGFVGEGRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALE 401
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+G+VEL R RL+ +SG YVLLSNI A
Sbjct: 402 LTKAMPMLPDVRIMGALLSTCKANGNVELPREILDRLVEFDSRDSGVYVLLSNILAINQR 461
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
W V ++R+LM I+K PG S+IE D KA
Sbjct: 462 WADVTRIRRLM-KMGIEKTPGSSVIEVDGKA 491
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 149/465 (32%), Positives = 236/465 (50%), Gaps = 67/465 (14%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F ++ ++N +I G S ++A L+ +M + ++FTF+ VL
Sbjct: 242 GDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVL 301
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC N GF HGK V G + F +A + V
Sbjct: 302 SACA-----NAGFFAHGKSVH--------------------GQITRLQPNFVPEAALPVN 336
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
++L Y++ G +++AR +FD M +D+VSWN +++GY + ++KA E+F E+P ++
Sbjct: 337 --NALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKN 394
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+SW M+SGYV G ++ AL++F MR+ +P D T ++AC +LG L+ GK++H
Sbjct: 395 ELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHG 454
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
L+ + + GNALI MYA+CG+++ A +FL M + D +W+ +I L HG
Sbjct: 455 HLVQLGFEGSNSA-GNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGR 513
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
E++ +F M + P I+F+ VL AC+H+G V+EG +YF+ M+ ++ I P HY
Sbjct: 514 EALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRL 573
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
GD+ELG A +L M
Sbjct: 574 IDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD 633
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G Y+LLSN Y++ G W +VRKLM D +KK+PGCS IEA +K
Sbjct: 634 GTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNK 678
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 122/300 (40%), Gaps = 76/300 (25%)
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV--RDLV 203
LI+ + GDL A+ LF D VA +SL A YA G L A S FD +P RD V
Sbjct: 65 LIHLYTLSGDLPAAATLFRADPC--PVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTV 122
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
N +I+ YA+ A +F + + SG +
Sbjct: 123 LHNAVISAYARASHAAPAVAVFRSL----------LASGSL------------------- 153
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD---MTSGVAKVLH-GNALIDMYAKCGS 319
RPDD + +LL+A L ++ V HC L + SG VL NAL+ +Y KC +
Sbjct: 154 -RPDDYSFTALLSAAGHLPNISVR---HCAQLQCSVLKSGAGGVLSVSNALVALYMKCEA 209
Query: 320 IER---AIEVFLGMRDRDVSTWST-------------------------------LIGGL 345
+E A +V M D+D TW+T +I G
Sbjct: 210 LEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGY 269
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIEP 404
G E+ +FR M +V E TF VL AC++AG GK + ++ R + N P
Sbjct: 270 VHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVP 329
>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 700
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 167/559 (29%), Positives = 266/559 (47%), Gaps = 92/559 (16%)
Query: 2 RTNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSD---SSALRELIYSGSVVIPGAI 55
R + + S K C+ L+ L K I + ++D SAL EL YS G +
Sbjct: 102 RPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIEL-YSKC----GQM 156
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-SIKPNKFTFSFVLKA 114
N A K+F + + D ++ +II G Q+ +P A+ +++M + P+ T A
Sbjct: 157 NDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASA 216
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C +L N+G VHG + + GF+ + NS++ + G + +A+ LF D+++W
Sbjct: 217 CAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISW 276
Query: 175 SSLTAGYARRGELSMARSLFDEMPVR---------------------------------- 200
SS+ A YA G + A +LF+EM +
Sbjct: 277 SSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVN 336
Query: 201 -----DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
D+ ++ Y K + A +LFN +PK+DVVSW + SGY GM ++L +
Sbjct: 337 YGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGV 396
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
F M S G RPD + ++ +L A ++LG ++ +H + + G +LI++YA
Sbjct: 397 FCNMLSYGTRPDAIALVKILAASSELGIVQQALCLH-AFVSKSGFDNNEFIGASLIELYA 455
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ-RLKVRPTEITFV 374
KC SI+ A +VF GMR +DV TWS++I FHG EE++ +F +M V+P ++TFV
Sbjct: 456 KCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFV 515
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
+L ACSHAG +EEG K F +M +EY + PN HYG
Sbjct: 516 SILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPM 575
Query: 411 ---------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
+H ++++G LA L + + +G Y LLSNIY W+ K+
Sbjct: 576 QAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKL 635
Query: 456 RKLMDDSDIKKQPGCSLIE 474
R L+ ++ KK G S++E
Sbjct: 636 RTLIKENRFKKIVGQSMVE 654
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 146/550 (26%), Positives = 243/550 (44%), Gaps = 77/550 (14%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVKITE 67
+L + C + ++ Q+ + G DS + +L +Y+ ++ +AHK+F +
Sbjct: 9 KLLETCCSKISIPQLHSQCLKVGLAHDSFVVTKLNVLYARY----ASLCHAHKLFEETPC 64
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI---KPNKFTFSFVLKACTRLLYRNMG 124
+++N ++R ++ + L+ QM +I +P+ +T S LK+C+ L +G
Sbjct: 65 KTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELG 124
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+HG + K + + FV ++LI ++ CG +N A +F K DVV W+S+ GY +
Sbjct: 125 KMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQN 184
Query: 185 GELSMARSLFDEMPVRDLVS---------------------------------------- 204
G +A + F M V + VS
Sbjct: 185 GSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCL 244
Query: 205 WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
N ++ Y K G + A LF E+P +D++SW++M++ Y G AL +F EM
Sbjct: 245 ANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRI 304
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
+ VT++S L ACA +LE GK +H ++ + + AL+DMY KC S + AI
Sbjct: 305 ELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFEL-DITVSTALMDMYMKCFSPKNAI 363
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
++F M +DV +W+ L G A G A +S+ +F M RP I V +L A S G
Sbjct: 364 DLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELG 423
Query: 385 KVEEGKKYFKLM------RDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVL 438
V++ + +E+ I Y ++ ANK MR+ D V
Sbjct: 424 IVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSID---NANKVFKGMRRK---DVVT 477
Query: 439 LSNIYASRGEWNRVEKVRKLM----DDSDIKKQ--------PGCS---LIEADDKAFLQY 483
S+I A+ G + E+ KL + SD+K CS LIE K F
Sbjct: 478 WSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVM 537
Query: 484 LFNLKPKPNS 493
+ + PN+
Sbjct: 538 VNEYQLMPNT 547
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 8/200 (4%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINY 57
NR + R +NL K I L GF D S+AL ++ Y AI+
Sbjct: 307 NRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDM-YMKCFSPKNAID- 364
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
+F ++ + D + + G A+ ++ ++ M +P+ +L A +
Sbjct: 365 ---LFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSE 421
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L C+H + K GF+ N F+ SLI +A C ++ A+ +F G + DVV WSS+
Sbjct: 422 LGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSI 481
Query: 178 TAGYARRGELSMARSLFDEM 197
A Y G+ A LF +M
Sbjct: 482 IAAYGFHGQGEEALKLFYQM 501
>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Brachypodium distachyon]
Length = 523
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 161/519 (31%), Positives = 250/519 (48%), Gaps = 85/519 (16%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+C L LKQ+ + + S +L+ S+ + + YA ++F P+ F+
Sbjct: 17 SRCATLAHLKQLHGRSVVTARAASQSTTFQLLRFASLRL-SCLPYARRLFDSTPHPNVFL 75
Query: 73 YNTIIRGSAQSQNPL----DAVFLYTQM-EKCSIKPNKFTFSFVLKACTRL---LYRNMG 124
Y+ ++ A + DA+ L+ +M + PN+F + VL+A + L R+
Sbjct: 76 YSAMLSAYAAASPAQAYGHDALALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRS-- 133
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+H K GF +R SL+ GY+R
Sbjct: 134 --IHSHACKSGFHAYDVIRTSLL-------------------------------DGYSRY 160
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G + AR LFD + R+++SW +++GYA+ G++ A LF+ +P+RDV +WNAMI+G
Sbjct: 161 GMMLDARKLFDGLTERNVISWTALVSGYARAGKIGDAIVLFDRMPERDVAAWNAMITGCT 220
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G+ +A+ + M G + + T+ +L+AC LG L++GK VH G
Sbjct: 221 QNGLFVEAVGICSRMVDEGFQLNGTTVSCVLSACGHLGMLKIGKVVHGYAWRSCVGFGSS 280
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
+ N LIDMY KCG+++ A +F DR ++TW++LI LA HG ++ +IA+F EM+
Sbjct: 281 V-VNGLIDMYGKCGNLKEARWMFDEFSDRSLTTWNSLINCLALHGHSKSAIAVFDEMRDE 339
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------- 410
+ P +TFVG+L AC+H G V+EG YFKLM DE IEP I HYG
Sbjct: 340 GIEPDVVTFVGLLNACTHGGFVDEGLTYFKLMCDELRIEPEIEHYGCIVDLLGRAGRFED 399
Query: 411 -------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
H +EL + ++LL + + + V+L+N+Y+
Sbjct: 400 AMNVINDMKVQPDEVIWGSLLNACRTHRQLELAEFSVRKLLQLNPNNANYVVMLANLYSE 459
Query: 446 RGEWNRVEKVRKLM-DDSDIKKQPGCSLIEADDKAFLQY 483
G W V K+RKLM +D KK PGCS IE D K Y
Sbjct: 460 GGSWEEVTKIRKLMKEDIMGKKLPGCSWIEVDRKTHRFY 498
>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 217/372 (58%), Gaps = 42/372 (11%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
NS+I + GD+ +A LFD + D +W+++ +GY + ++ A +LF MP D +
Sbjct: 293 NSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTL 352
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN+MI+G+++ G ++ A++LF +P++ +VSWN+MISGY K A+ +F +M+ G
Sbjct: 353 SWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEG 412
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
++PD T+ S+L+ACA L DL +G ++H L + +A + N+L+ MY++CG+I A
Sbjct: 413 KKPDRHTLSSILSACAGLVDLVLGTQIH--QLVTKAFIADLPINNSLVTMYSRCGAIVEA 470
Query: 324 IEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
VF M RDV +W+ +IGG A+HGFA E++ +F M++ V+P+ ITF+ VL AC+H
Sbjct: 471 RMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAH 530
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
AG +EEG++ F M + + I+P + HY
Sbjct: 531 AGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWG 590
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
VH +VE+ R A + L+ ++ + S YVLL N+YA G W+ ++R +M+ ++
Sbjct: 591 ALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNN 650
Query: 464 IKKQPGCSLIEA 475
++K G S +++
Sbjct: 651 VQKDAGYSRVDS 662
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 49/298 (16%)
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE--LSMARSLFD 195
+N N +I + ++ A LF+ D+V+W+ + +GY G + AR++FD
Sbjct: 86 WNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFD 145
Query: 196 EMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
+MP D VSWN M++GYAK G M+KA ELFNE+P+R+VVSWNAM+SGY++ G ++A+E
Sbjct: 146 QMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEF 205
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDL------------EVGK----KVHCTLL---- 295
F+ M + D ++ +L++ L VGK + TL+
Sbjct: 206 FKLM----PKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYG 261
Query: 296 -------------------DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
D V+ N++I Y + G I A E+F M +RD
Sbjct: 262 QKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTF 321
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK 394
+W+T+I G +E+ +F M P +++ ++ S G ++ FK
Sbjct: 322 SWNTMISGYVQILDMKEASNLFSRMP----EPDTLSWNMMISGFSEIGSLKLAHDLFK 375
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 154/356 (43%), Gaps = 79/356 (22%)
Query: 50 VIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFS 109
V G I A ++F K+ E DTF +NT+I G Q + +A L+++M P T S
Sbjct: 300 VRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRM------PEPDTLS 353
Query: 110 FVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
+ N +I + G L A LF +
Sbjct: 354 W---------------------------------NMMISGFSEIGSLKLAHDLFKRIPEK 380
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMP------------------------------- 198
+V+W+S+ +GY + + A ++F +M
Sbjct: 381 SLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIH 440
Query: 199 -------VRDLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNK 250
+ DL N ++T Y++ G + +A +F+E+ +RDV+SWNAMI GY G
Sbjct: 441 QLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFAT 500
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+AL++F+ M+ +P +T +S+L ACA G +E G++ ++++ +V H AL
Sbjct: 501 EALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAAL 560
Query: 311 IDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
+D+ + G +E A+ + M + D + W L+G H E + A + +L+
Sbjct: 561 VDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQ 616
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 11/165 (6%)
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
R G ++ AR LFD + ++WN MIT Y K+ EM KA +LF E+P RD+VSWN M+SG
Sbjct: 69 RTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSG 128
Query: 243 YVLCG--MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
Y+ CG ++A MF++M D V+ ++L+ A G ++ +++ + +
Sbjct: 129 YISCGGKFVERARNMFDQM----PETDCVSWNTMLSGYAKSGTMDKAEELFNEMPE---- 180
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
V+ NA++ Y G +E+AIE F M RD ++ L+ GL
Sbjct: 181 -RNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGL 224
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 46/200 (23%)
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
V + S N I+ + G + +A ELF+ + ++WN MI+ YV +A ++FEE
Sbjct: 54 VPEFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEE 113
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M P+ ++ N ++ Y CG
Sbjct: 114 M------PNR----------------------------------DIVSWNLMLSGYISCG 133
Query: 319 S--IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
+ERA +F M + D +W+T++ G A G +++ +F EM V G
Sbjct: 134 GKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGY 193
Query: 377 LVACSHAGKVEEGKKYFKLM 396
L+ G VE+ ++FKLM
Sbjct: 194 LM----NGHVEKAIEFFKLM 209
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 146/467 (31%), Positives = 240/467 (51%), Gaps = 76/467 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G + A K+F +I E D +N +I + DA+ ++ +M + S +K ++ T
Sbjct: 163 GKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVST 222
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L AC+ L RN + G E +R+V D + +M
Sbjct: 223 LSACSVL--RNQ---------EVGEEIHRYV---------------------DAELEMTT 250
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
++L Y + G + AR++FDEM ++++ W M++GYA G +++A ELF P R
Sbjct: 251 KIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVR 310
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
D+V W AMI+GYV + +AL++F +M+ RPD+ +++LL CA G LE GK +H
Sbjct: 311 DIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLH 370
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ + + + +V+ G AL+D+YAKCG +E+A+EVF M++RD ++W+++I GLA +G
Sbjct: 371 GYIHENSITLDRVV-GTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMT 429
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411
+++ F +M+ RP +ITF+GVL AC+H G VEEG++YF M Y I+P HY
Sbjct: 430 SKALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSC 489
Query: 412 ------------------------------------------HGDVELGRLANKRLLNMR 429
+G++++ +RL +
Sbjct: 490 LIDLLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVE 549
Query: 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+S + LL+++YAS W V VR+ M + I+K PGCS IE +
Sbjct: 550 VKDSSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEVN 596
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 40/225 (17%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D N ++ Y G+ME A ++F+E+P+RDVVSWN +IS YV + A+ +F MR
Sbjct: 148 DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMR 207
Query: 261 SVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTL---LDMTSGVAKVLHGNALIDMYAK 316
+ D+ T++S L+AC+ L + EVG+++H + L+MT+ + GNAL+DMY K
Sbjct: 208 RESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKI-----GNALLDMYCK 262
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG--------------------------- 349
CG +++A +F M +++V W++++ G A +G
Sbjct: 263 CGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGY 322
Query: 350 ----FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+E++ +FR+MQ ++RP V +L C+ G +E+GK
Sbjct: 323 VQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGK 367
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 131/309 (42%), Positives = 187/309 (60%), Gaps = 42/309 (13%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N ++ YA G E A++LF + +R++V+WN++I+GY L G +AL +F EM G
Sbjct: 34 NTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVE 93
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAI 324
PD TM+SLL+ACA+LG L +G++ H ++ + G+ LH GNAL+D+YAKCGSI +A
Sbjct: 94 PDGFTMVSLLSACAELGALALGRRAHVYMVKV--GLDGNLHAGNALLDLYAKCGSIRQAH 151
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
+VF M ++ V +W++LI GLA +GF +E++ +F+E++R + P+EITFVGVL ACSH G
Sbjct: 152 KVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 211
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------------- 410
V+EG YFK M++EY I P I HYG
Sbjct: 212 MVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTL 271
Query: 411 -----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
+HG + LG +A +LL + SGDYVLLSN+YAS W+ V KVR+ M +K
Sbjct: 272 LGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVK 331
Query: 466 KQPGCSLIE 474
K PG SL+E
Sbjct: 332 KTPGHSLVE 340
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 142/296 (47%), Gaps = 42/296 (14%)
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+A +L+ G VH ++ GFE FV+N+L++ +A CG +A LF+ A+ ++V
Sbjct: 3 RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLV 62
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR-------------------------------- 200
W+S+ GYA G + A +LF EM +R
Sbjct: 63 TWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM 122
Query: 201 -------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
+L + N ++ YAK G + +A+++F+E+ ++ VVSW ++I G + G K+AL
Sbjct: 123 VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEAL 182
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
E+F+E+ G P ++T + +L AC+ G ++ G + + V K+ H ++D+
Sbjct: 183 ELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDL 242
Query: 314 YAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+ G +++A E M + W TL+G HG ++ Q L++ P
Sbjct: 243 LGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHL--ALGEVARAQLLQLEP 296
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 18/299 (6%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
R K ++R +++ ++ NGF S L++ + G AHK+F + E +
Sbjct: 3 RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAAC--GHAESAHKLFELMAERN 60
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+N++I G A + P +A+ L+ +M ++P+ FT +L AC L +G H
Sbjct: 61 LVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHV 120
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+VK G + N N+L+ +A CG + A +FD + VV+W+SL G A G
Sbjct: 121 YMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKE 180
Query: 190 ARSLFDEMPVRDLVSWNVMITG--YA-------KQG--EMEKANELFNEVPKRDVVSWNA 238
A LF E+ + L+ + G YA +G ++ E + VPK + +
Sbjct: 181 ALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPK--IEHYGC 238
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
M+ G+ KQA E + M +P+ V +LL AC G L +G+ LL +
Sbjct: 239 MVDLLGRAGLVKQAHEFIQNMPM---QPNAVVWRTLLGACTIHGHLALGEVARAQLLQL 294
>gi|115458312|ref|NP_001052756.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|32479728|emb|CAE01515.1| OJ991214_12.4 [Oryza sativa Japonica Group]
gi|113564327|dbj|BAF14670.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|125590342|gb|EAZ30692.1| hypothetical protein OsJ_14749 [Oryza sativa Japonica Group]
Length = 545
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 152/535 (28%), Positives = 251/535 (46%), Gaps = 74/535 (13%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
+ L +C R L Q+ A + G ++ + L + + ++ + + + P
Sbjct: 13 ATLLGRCRTARCLAQLHARIVRLGLHNHHALLARFAAACDALSCPSVAAS---LLSVAVP 69
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ N ++ A+ DA+ + + + +P+ F+F +L AC R G +H
Sbjct: 70 -VRLRNAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASLH 128
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCG-------------------------------DLN 157
++ G + + FVR +LI F+ CG D+
Sbjct: 129 AAAIRLGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDIL 188
Query: 158 TASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGE 217
TA LFD +VV W+++ GY + G+L AR LFDEMP R ++ +I GY G
Sbjct: 189 TARELFDQIPHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAGN 248
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
M A LF+++ RD+ +W+ MISG G +AL +F E + PD++ ++ L++A
Sbjct: 249 MGAARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMSA 308
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
C+ LG++ + + + ++ + V LI+M AKCG++ERA +F M RDV +
Sbjct: 309 CSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVFS 368
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
+ +++ G HG A +++ +F +M + P F VL ACSHAG VEEGK+YF +M+
Sbjct: 369 YCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMMK 428
Query: 398 DEYNIEPNIRHYGV---------------------------------------HGDVELG 418
+EY I P+ HY H D+ELG
Sbjct: 429 NEYMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCDIELG 488
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
++A K+L + + +G+YV LSNIYA+ W V + R M I K GC+L+
Sbjct: 489 KIAAKKLFEIEPENAGNYVSLSNIYANIDRWGNVSETRAEMTGRGITKIAGCTLV 543
>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 217/372 (58%), Gaps = 42/372 (11%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
NS+I + GD+ +A LFD + D +W+++ +GY + ++ A +LF MP D +
Sbjct: 293 NSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTL 352
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN+MI+G+++ G ++ A++LF +P++ +VSWN+MISGY K A+ +F +M+ G
Sbjct: 353 SWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEG 412
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
++PD T+ S+L+ACA L DL +G ++H L + +A + N+L+ MY++CG+I A
Sbjct: 413 KKPDRHTLSSILSACAGLVDLVLGTQIH--QLVTKAFIADLPINNSLVTMYSRCGAIVEA 470
Query: 324 IEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
VF M RDV +W+ +IGG A+HGFA E++ +F M++ V+P+ ITF+ VL AC+H
Sbjct: 471 RMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAH 530
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
AG +EEG++ F M + + I+P + HY
Sbjct: 531 AGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWG 590
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
VH +VE+ R A + L+ ++ + S YVLL N+YA G W+ ++R +M+ ++
Sbjct: 591 ALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNN 650
Query: 464 IKKQPGCSLIEA 475
++K G S +++
Sbjct: 651 VQKDAGYSRVDS 662
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 55/301 (18%)
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE--LSMARSLFD 195
+N N +I + ++ A LF+ D+V+W+ + +GY G + AR++FD
Sbjct: 86 WNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFD 145
Query: 196 EMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
+MP D VSWN M++GYAK G M+KA ELFNE+P+R+VVSWNAM+SGY++ G ++A+E
Sbjct: 146 QMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEF 205
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK------------ 303
F+ M + D ++ +L++ L +++ LL V K
Sbjct: 206 FKLM----PKRDSASLRALISGLIQNDKLVEAERI---LLQYGGNVGKGDLVDAYNTLIA 258
Query: 304 ------------------------------VLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
V+ N++I Y + G I A E+F M +R
Sbjct: 259 GYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVER 318
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
D +W+T+I G +E+ +F M P +++ ++ S G ++ F
Sbjct: 319 DTFSWNTMISGYVQILDMKEASNLFSRMP----EPDTLSWNMMISGFSEIGSLKLAHDLF 374
Query: 394 K 394
K
Sbjct: 375 K 375
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 154/356 (43%), Gaps = 79/356 (22%)
Query: 50 VIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFS 109
V G I A ++F K+ E DTF +NT+I G Q + +A L+++M P T S
Sbjct: 300 VRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRM------PEPDTLS 353
Query: 110 FVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
+ N +I + G L A LF +
Sbjct: 354 W---------------------------------NMMISGFSEIGSLKLAHDLFKRIPEK 380
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMP------------------------------- 198
+V+W+S+ +GY + + A ++F +M
Sbjct: 381 SLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIH 440
Query: 199 -------VRDLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNK 250
+ DL N ++T Y++ G + +A +F+E+ +RDV+SWNAMI GY G
Sbjct: 441 QLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFAT 500
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+AL++F+ M+ +P +T +S+L ACA G +E G++ ++++ +V H AL
Sbjct: 501 EALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAAL 560
Query: 311 IDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
+D+ + G +E A+ + M + D + W L+G H E + A + +L+
Sbjct: 561 VDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQ 616
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 11/165 (6%)
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
R G ++ AR LFD + ++WN MIT Y K+ EM KA +LF E+P RD+VSWN M+SG
Sbjct: 69 RTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSG 128
Query: 243 YVLCG--MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
Y+ CG ++A MF++M D V+ ++L+ A G ++ +++ + +
Sbjct: 129 YISCGGKFVERARNMFDQM----PETDCVSWNTMLSGYAKSGMMDKAEELFNEMPE---- 180
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
V+ NA++ Y G +E+AIE F M RD ++ LI GL
Sbjct: 181 -RNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGL 224
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 46/200 (23%)
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
V + S N I+ + G + +A ELF+ + ++WN MI+ YV +A ++FEE
Sbjct: 54 VPEFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEE 113
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M P+ ++ N ++ Y CG
Sbjct: 114 M------PNR----------------------------------DIVSWNLMLSGYISCG 133
Query: 319 S--IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
+ERA +F M + D +W+T++ G A G +++ +F EM V G
Sbjct: 134 GKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGY 193
Query: 377 LVACSHAGKVEEGKKYFKLM 396
L+ G VE+ ++FKLM
Sbjct: 194 LM----NGHVEKAIEFFKLM 209
>gi|357482055|ref|XP_003611313.1| hypothetical protein MTR_5g012660 [Medicago truncatula]
gi|355512648|gb|AES94271.1| hypothetical protein MTR_5g012660 [Medicago truncatula]
Length = 519
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 143/462 (30%), Positives = 239/462 (51%), Gaps = 44/462 (9%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
+AH +FV+I +P+ +NT+I G + A+ L+T++E+ I + F+F+ + AC
Sbjct: 59 HAHNLFVEIPQPNVVSWNTLISGYVHAGQFKKALSLFTKLERSQICADAFSFTSAMVACA 118
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
+L +G +H K VK G + N V N LI + CG + A +F A DV++W+S
Sbjct: 119 QLSLLKLGSSIHSKTVKLGMDNNTVVANCLIDMYGKCGSVERAVRIFSDIADKDVISWNS 178
Query: 177 LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW 236
+ A A G + + MP D+VS+N +I G A+ G++E A + + +P + SW
Sbjct: 179 VIAACANNGNIGLGFKFLQLMPNPDVVSYNGLINGIAQAGKIEDAVRILSTMPCPNSSSW 238
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
N++I+G+V +ALEMF +M + D+ T +L A L L G +HC +
Sbjct: 239 NSVITGFVNRSRVPEALEMFGKMHLKNLQIDEFTFSIILNGIASLSALTWGMLIHCCTIK 298
Query: 297 MTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ V+ G++LIDMY+KCG + A +F + +R++ +W+ +I G A +G + ++I+
Sbjct: 299 YGLDSSIVV-GSSLIDMYSKCGQVNDAESIFNVLSNRNLVSWNAMIYGYARNGDSAQAIS 357
Query: 357 MFR--EMQRLKVRPTEITFVGVLVACSHAG-KVEEGKKYFKLMRDEYNIEPNIRH----- 408
+F +M+R +P ITF+ V+ ACSH+ E G +YF M +EY I P+I+H
Sbjct: 358 LFELLKMER-DTKPDGITFLNVISACSHSQIPFEMGIQYFDAMINEYGIAPSIKHCCSMI 416
Query: 409 ----------------------------------YGVHGDVELGRLANKRLLNMRKDESG 434
G D+ + +A +++ + +DE
Sbjct: 417 RLMGQKGELSRAQKMIHELGFESCGVVWRSLLAACGTQEDLHVAEIAAAKVIGLERDEDY 476
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
YV+LSN+YAS G W V +R LM ++K+ G S IE +
Sbjct: 477 VYVMLSNMYASFGRWEDVNVIRSLMSKKRVRKEAGSSWIEVN 518
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 104/189 (55%), Gaps = 5/189 (2%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+I Y K A+ LF E+P+ +VVSWN +ISGYV G K+AL +F ++ D
Sbjct: 47 LIKFYVKMHLFTHAHNLFVEIPQPNVVSWNTLISGYVHAGQFKKALSLFTKLERSQICAD 106
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+ S + ACA L L++G +H + + V+ N LIDMY KCGS+ERA+ +F
Sbjct: 107 AFSFTSAMVACAQLSLLKLGSSIHSKTVKLGMDNNTVV-ANCLIDMYGKCGSVERAVRIF 165
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
+ D+DV +W+++I A +G +I + + +L P +++ G++ + AGK+E
Sbjct: 166 SDIADKDVISWNSVIAACANNG----NIGLGFKFLQLMPNPDVVSYNGLINGIAQAGKIE 221
Query: 388 EGKKYFKLM 396
+ + M
Sbjct: 222 DAVRILSTM 230
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 30/255 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A ++ + P++ +N++I G +A+ ++ +M +++ ++FTFS +L
Sbjct: 218 GKIEDAVRILSTMPCPNSSSWNSVITGFVNRSRVPEALEMFGKMHLKNLQIDEFTFSIIL 277
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
L G +H +KYG + + V +SLI ++ CG +N A +F+ + ++V
Sbjct: 278 NGIASLSALTWGMLIHCCTIKYGLDSSIVVGSSLIDMYSKCGQVNDAESIFNVLSNRNLV 337
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPV-RD-----LVSWNVMITGYAKQGEMEKANELFN 226
+W+++ GYAR G+ + A SLF+ + + RD + NV+ Q E + F
Sbjct: 338 SWNAMIYGYARNGDSAQAISLFELLKMERDTKPDGITFLNVISACSHSQIPFEMGIQYF- 396
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML-------------S 273
+AMI+ Y + K M M GE M+ S
Sbjct: 397 ----------DAMINEYGIAPSIKHCCSMIRLMGQKGELSRAQKMIHELGFESCGVVWRS 446
Query: 274 LLTACADLGDLEVGK 288
LL AC DL V +
Sbjct: 447 LLAACGTQEDLHVAE 461
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
+ + ++ L+ DL + G+++H + A + LI Y K A +
Sbjct: 4 NALALVDLIRTATDLCFHKFGQQIHSYAIRSGYFHANIYVSTTLIKFYVKMHLFTHAHNL 63
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F+ + +V +W+TLI G G ++++++F +++R ++ +F +VAC+ +
Sbjct: 64 FVEIPQPNVVSWNTLISGYVHAGQFKKALSLFTKLERSQICADAFSFTSAMVACAQLSLL 123
Query: 387 EEG----KKYFKLMRDEYNIEPN--IRHYGVHGDVE 416
+ G K KL D + N I YG G VE
Sbjct: 124 KLGSSIHSKTVKLGMDNNTVVANCLIDMYGKCGSVE 159
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 129/321 (40%), Positives = 189/321 (58%), Gaps = 40/321 (12%)
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP + LVS MIT YAK G +++A LF+ + +RD + WN MI GY G+ + L +F
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
+M + RP++VT+L++L+AC G LE G+ VH + + G+ V G +LIDMY+K
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGI-NVRVGTSLIDMYSK 119
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CGS+E A VF + ++DV W++++ G A HGF+++++ +F+EM + +PT+ITF+GV
Sbjct: 120 CGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGV 179
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------- 410
L ACSHAG V EG K+F M+DEY IEP + HYG
Sbjct: 180 LNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQ 239
Query: 411 -------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
+HG++ LG + L++ SG YVLLSNIYA+ G W V +VR
Sbjct: 240 DPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRT 299
Query: 458 LMDDSDIKKQPGCSLIEADDK 478
LM +S +K+PGCS IE ++K
Sbjct: 300 LMKESGFEKEPGCSSIEVNNK 320
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 16/249 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I+ A +F + E D +N +I G AQ P + + L+ QM ++PN+ T VL
Sbjct: 20 GMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVL 79
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + G VH I G N V SLI ++ CG L A ++F+ + DVV
Sbjct: 80 SACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVV 139
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELFNEV 228
AW+S+ GYA G A LF EM + ++ G + G + + + F +
Sbjct: 140 AWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSM 199
Query: 229 -------PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
PK V + M++ L G E +E ++++ D V +LL AC
Sbjct: 200 KDEYGIEPK--VEHYGCMVN---LLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLH 254
Query: 282 GDLEVGKKV 290
G++ +G+++
Sbjct: 255 GNIALGEQI 263
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 155/553 (28%), Positives = 277/553 (50%), Gaps = 90/553 (16%)
Query: 9 SRLWKKCTNLRTL---KQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMF 62
+ L C+++ L KQ + G +SD AL +L S I AH+ F
Sbjct: 376 ASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCS-----DIKTAHEFF 430
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
+ + ++N ++ N ++ ++TQM+ I+PN+FT+ +L+ C+ L +
Sbjct: 431 LSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVD 490
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
+G +H +++K GF+FN +V + LI +A G L+ A +F + DVV+W+++ AGYA
Sbjct: 491 LGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYA 550
Query: 183 RRGELSMARSLFDEMPVR---------------------------------------DLV 203
+ + + A +LF EM + DL
Sbjct: 551 QHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLS 610
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
N +++ YA+ G++ A F+++ +D +SWN++ISG+ G ++AL +F +M G
Sbjct: 611 VGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAG 670
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
+ + T ++A A++ ++++GK++H ++ T ++ N LI +YAKCG+I+ A
Sbjct: 671 QEINSFTFGPAVSAAANVANVKLGKQIHAMIIK-TGHDSETEVSNVLITLYAKCGNIDDA 729
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
F M +++ +W+ ++ G + HG +++++F +M++L V P +TFVGVL ACSH
Sbjct: 730 ERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHV 789
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G V+EG KYF+ MR+ + + P HY
Sbjct: 790 GLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRT 849
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
VH ++++G A LL + +S YVLLSN+YA G+W ++ R++M D +
Sbjct: 850 LLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGV 909
Query: 465 KKQPGCSLIEADD 477
KK+PG S IE ++
Sbjct: 910 KKEPGRSWIEVNN 922
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 189/378 (50%), Gaps = 40/378 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G +N A K+F + + D+ + ++ G +QS +AV L+ QM + P + FS VL
Sbjct: 219 GFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVL 278
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
ACT++ + +G +HG ++K GF +V N+L+ ++ G+ A +F+ + D V
Sbjct: 279 SACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEV 338
Query: 173 AWSSLTAGYARRGELSMARSLFDEM----------------------------------P 198
+++SL +G +++G A LF +M
Sbjct: 339 SYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYA 398
Query: 199 VRDLVSWNVMITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
++ +S ++++ G Y K +++ A+E F +VV WN M+ Y L ++
Sbjct: 399 IKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESF 458
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
++F +M+ G P+ T S+L C+ L +++G+++H +L T V + LIDM
Sbjct: 459 KIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLK-TGFQFNVYVSSVLIDM 517
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YAK G ++ A+++F ++++DV +W+ +I G A H E++ +F+EMQ + I F
Sbjct: 518 YAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGF 577
Query: 374 VGVLVACSHAGKVEEGKK 391
+ AC+ + +G++
Sbjct: 578 ASAISACAGIQALNQGQQ 595
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/419 (26%), Positives = 198/419 (47%), Gaps = 50/419 (11%)
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF-CV---HGKIVKYGFEFNRFVRNSLI 147
L+ +M + +KP++ T++ VL+ C ++ F CV H + + +G+E + FV N LI
Sbjct: 156 LFRRMLQEKVKPDERTYAGVLRGCGG---GDVPFHCVEKIHARTITHGYENSLFVCNPLI 212
Query: 148 YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------PVRD 201
+ G LN+A +FDG K D V+W ++ +G ++ G A LF +M P
Sbjct: 213 DLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPY 272
Query: 202 LVS---------------------------------WNVMITGYAKQGEMEKANELFNEV 228
+ S N ++T Y++ G A ++FN +
Sbjct: 273 IFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAM 332
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
+RD VS+N++ISG G + +ALE+F++M +PD VT+ SLL+AC+ +G L VGK
Sbjct: 333 LQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGK 392
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
+ H + +L G AL+D+Y KC I+ A E FL +V W+ ++
Sbjct: 393 QFHSYAIKAGMSSDIILEG-ALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLL 451
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIEPNIR 407
ES +F +MQ + P + T+ +L CS V+ G++ + ++++ + +
Sbjct: 452 DNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVS 511
Query: 408 HYGVHGDVELGRL--ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
+ +LG+L A K +++ + + + YA ++ + K M D I
Sbjct: 512 SVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGI 570
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 185/408 (45%), Gaps = 47/408 (11%)
Query: 9 SRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
S + CT + K Q+ LV GF+ ++ L+ S + G A ++F +
Sbjct: 275 SSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRL--GNFIPAEQVFNAM 332
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+ D YN++I G +Q A+ L+ +M +KP+ T + +L AC+ + +G
Sbjct: 333 LQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGK 392
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
H +K G + + +L+ + C D+ TA F +VV W+ + Y
Sbjct: 393 QFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLD 452
Query: 186 ELSMARSLFDEMPVRDL-------------------------VSWNVMITG--------- 211
L+ + +F +M + + + V+ TG
Sbjct: 453 NLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSS 512
Query: 212 -----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
YAK G+++ A ++F + ++DVVSW AMI+GY +AL +F+EM+ G
Sbjct: 513 VLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHS 572
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIE 325
D++ S ++ACA + L G+++H SG + L GNAL+ +YA+CG + A
Sbjct: 573 DNIGFASAISACAGIQALNQGQQIHAQAC--VSGYSDDLSVGNALVSLYARCGKVRDAYF 630
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
F + +D +W++LI G A G EE++++F +M + TF
Sbjct: 631 AFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTF 678
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 41/337 (12%)
Query: 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
ME+ ++ N T+ ++L C + + G+ +HGKI+K GF + L+ + GD
Sbjct: 59 MEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGD 118
Query: 156 LNTASVLFDGDAKMDVVAWSSL----TAGYARRGELSMARSLFDEMPVRD---------- 201
L+ A +FD + W+ + AG L + R + E D
Sbjct: 119 LDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRG 178
Query: 202 --------------------------LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
L N +I Y K G + A ++F+ + KRD VS
Sbjct: 179 CGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVS 238
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
W AM+SG G ++A+ +F +M + G P S+L+AC + +VG+++H +L
Sbjct: 239 WVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVL 298
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
+ + NAL+ +Y++ G+ A +VF M RD ++++LI GL+ G++++++
Sbjct: 299 KQGFSLETYV-CNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKAL 357
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
+F++M ++P +T +L ACS G + GK++
Sbjct: 358 ELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQF 394
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 241/464 (51%), Gaps = 75/464 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
G + A F K+ E +N ++ G AQ P + + L+ M +++P++ T++ V
Sbjct: 142 GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATV 201
Query: 112 LKACTRLLYRNMGFCVHGKIV-----KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
+ +C+ L C+ IV K GF N FV+ +L+ HA CG+L A +F+
Sbjct: 202 ISSCSSL----GDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFE-- 255
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
++ V + R V WN MI+ YA+ G++ A LF+
Sbjct: 256 -QLGVYKY-------------------------RSSVPWNAMISAYARVGDLPSAKHLFD 289
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE--RPDDVTMLSLLTACADLGDL 284
++P+RD VSWN+MI+GY G + +A+++FEEM S + +PD+VTM+S+ +AC LG+L
Sbjct: 290 KMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGEL 349
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
+G ++L + + N+LI+MY++CGS++ A+ +F M RD+ +++TLI G
Sbjct: 350 GLGNWA-VSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISG 408
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR----DEY 400
A HG ESI + +M+ + P IT++ +L ACSHAG ++EG++ F+ ++ D Y
Sbjct: 409 FAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDVDHY 468
Query: 401 -----------------------NIEPNIRHYG-------VHGDVELGRLANKRLLNMRK 430
+EP+ YG +H VELG LA +L +
Sbjct: 469 ACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEP 528
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
SG+Y LLSNIYAS G W +KVR M +KK G S +E
Sbjct: 529 HNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSWLE 572
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 175/342 (51%), Gaps = 47/342 (13%)
Query: 90 VFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIY 148
V L+ M + C IKPN +S ++K+ +M F H ++K G++ + +VRN ++
Sbjct: 16 VSLFKHMLQHCDIKPNASFYSVMMKSAGS---ESMLFLAH--VLKSGYDRDHYVRNGILG 70
Query: 149 FHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF----DEMPVRDLVS 204
+A G + A LFD V W+ + +GY + G A +LF D+ R++++
Sbjct: 71 IYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVIT 130
Query: 205 WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
W MITG+AK+G ++ A F+++P+R VVSWNAM+SGY G ++ + +F +M S G
Sbjct: 131 WTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGN 190
Query: 265 -RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
+PD+ T +++++C+ LGD + + + L D AL+DM+AKCG++E A
Sbjct: 191 VQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAA 250
Query: 324 IEVF--LG--------------------------------MRDRDVSTWSTLIGGLAFHG 349
++F LG M RD +W+++I G +G
Sbjct: 251 HKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNG 310
Query: 350 FAEESIAMFREM--QRLKVRPTEITFVGVLVACSHAGKVEEG 389
+ ++I +F EM +P E+T V V AC H G++ G
Sbjct: 311 ESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLG 352
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
N ++ +YAK G IE A ++F M DR V+ W+ +I G G EE+ +F M ++
Sbjct: 66 NGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEIS 125
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELG-RLANKR 424
IT+ ++ + G ++ + YF M + + N + Y G E RL N
Sbjct: 126 RNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM 185
Query: 425 LL--NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
L N++ DE+ ++S+ +S G+ E + + +DD
Sbjct: 186 LSPGNVQPDETTWATVISSC-SSLGDPCLSESIVRKLDD 223
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 228/449 (50%), Gaps = 75/449 (16%)
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I G A L+A ++ +M I+ ++FTF+ V+ C +G +H +
Sbjct: 257 WNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFL 316
Query: 133 KY----GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
K + V N+LI F+ CG K+D+
Sbjct: 317 KTVANPAPDVAMPVNNALITFYWKCG-------------KVDI----------------- 346
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
A+ +F++MP RDLVSWN++++GY M++A FNE+P+++++SW MISG G
Sbjct: 347 -AQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGF 405
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
++AL+ F M+ G P D + +C+ LG L+ G+++H ++ + + GN
Sbjct: 406 AEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYE-SSLSAGN 464
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
ALI MYA+CG ++ A +F+ M D +W+ +I L HG ++I +F EM + + P
Sbjct: 465 ALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILP 524
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
I+F+ V+ ACSHAG V+EG+KYF M + Y + P+ HY
Sbjct: 525 DRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEV 584
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+HG+++LG A +RL ++ G YVLLSN+YA G+W
Sbjct: 585 MESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQW 644
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
N + KVRKLM D +KK+PGCS IE ++K
Sbjct: 645 NDMAKVRKLMRDRGVKKEPGCSWIEVENK 673
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/475 (23%), Positives = 190/475 (40%), Gaps = 121/475 (25%)
Query: 2 RTNRHRSSRLWKKCT-----NLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGA 54
RT +R L + C + + + A + +GF L LI YS S
Sbjct: 8 RTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKS----SK 63
Query: 55 INYAHKMFVKITEPD---------------------------------TFMYNTIIRGSA 81
+NYA +F +I +PD + YN +I +
Sbjct: 64 LNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYS 123
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC--VHGKIVKYGFEFN 139
+ + A+ L+ M++ + +P+ +TF+ VL A L+ C +H +VK G F
Sbjct: 124 HNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALA-LVAEKEKHCQQLHCAVVKSGTGFV 182
Query: 140 RFVRNSLIYFHANCGD---------LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
V N+LI + C + A LFD D ++W+++ GY + +L A
Sbjct: 183 TSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAA 242
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
+ + + V+WN MI+GYA + G+
Sbjct: 243 KEFLNGTSKKLGVAWNAMISGYAHR-------------------------------GLYL 271
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH---G 307
+A EMF +M + D+ T S+++ CA+ G +GK++H L + A +
Sbjct: 272 EAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVN 331
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWS---------------------------- 339
NALI Y KCG ++ A E+F M +RD+ +W+
Sbjct: 332 NALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNIL 391
Query: 340 ---TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+I GLA GFAEE++ F M+ P + F G +++CS G ++ G++
Sbjct: 392 SWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQ 446
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 240/464 (51%), Gaps = 75/464 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
G + A F K+ E +N ++ G AQ P + + L+ M +++P++ T++ V
Sbjct: 199 GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATV 258
Query: 112 LKACTRLLYRNMGFCVHGKIV-----KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
+ +C+ L C+ IV K GF N FV+ +L+ HA CG+L A +F+
Sbjct: 259 ISSCSSL----GDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFE-- 312
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
++ V + R V WN MI+ YA+ G++ A LF+
Sbjct: 313 -QLGVYKY-------------------------RSSVPWNAMISAYARVGDLPSAKHLFD 346
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV--GERPDDVTMLSLLTACADLGDL 284
++P+RD VSWN+MI+GY G + +A+++FEEM S +PD+VTM+S+ +AC LG+L
Sbjct: 347 KMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGEL 406
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
+G ++L + + N+LI+MY++CGS++ A+ +F M RD+ +++TLI G
Sbjct: 407 GLGNWA-VSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISG 465
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR----DEY 400
A HG ESI + +M+ + P IT++ +L ACSHAG ++EG++ F+ ++ D Y
Sbjct: 466 FAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDVDHY 525
Query: 401 -----------------------NIEPNIRHYG-------VHGDVELGRLANKRLLNMRK 430
+EP+ YG +H VELG LA +L +
Sbjct: 526 ACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEP 585
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
SG+Y LLSNIYAS G W +KVR M +KK G S +E
Sbjct: 586 HNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSWLE 629
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 191/388 (49%), Gaps = 54/388 (13%)
Query: 56 NYAHKMFVKITEPD----TFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSF 110
+Y +F T PD TFM + SQ V L+ M + C IKPN +S
Sbjct: 38 SYTCHIFHAATHPDVRVFTFMLKYYSQIGVHSQV---FVSLFKHMLQHCDIKPNASFYSV 94
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
++K+ +M F H ++K G++ + +VRN ++ +A G + A LFD
Sbjct: 95 MMKSAGS---ESMLFLAH--VLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRT 149
Query: 171 VVAWSSLTAGYARRGELSMARSLF----DEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
V W+ + +GY + G A +LF D+ R++++W MITG+AK+G ++ A F+
Sbjct: 150 VADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFD 209
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLE 285
++P+R VVSWNAM+SGY G ++ + +F +M S G +PD+ T +++++C+ LGD
Sbjct: 210 KMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPC 269
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF--LG-------------- 329
+ + + L D AL+DM+AKCG++E A ++F LG
Sbjct: 270 LSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMI 329
Query: 330 ------------------MRDRDVSTWSTLIGGLAFHGFAEESIAMFREM--QRLKVRPT 369
M RD +W+++I G +G + ++I +F EM +P
Sbjct: 330 SAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPD 389
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMR 397
E+T V V AC H G++ G +++
Sbjct: 390 EVTMVSVFSACGHLGELGLGNWAVSILK 417
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
N ++ +YAK G IE A ++F M DR V+ W+ +I G G EE+ +F M ++
Sbjct: 123 NGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEIS 182
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELG-RLANKR 424
IT+ ++ + G ++ + YF M + + N + Y G E RL N
Sbjct: 183 RNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM 242
Query: 425 LL--NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
L N++ DE+ ++S+ +S G+ E + + +DD
Sbjct: 243 LSPGNVQPDETTWATVISSC-SSLGDPCLSESIVRKLDD 280
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 231/463 (49%), Gaps = 73/463 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F D F + +I ++ ++A+ +++ M + ++ V+
Sbjct: 217 GMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALAVFSDMREEGWPVDEAVMVSVV 276
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + G HG +V+ G V+N+LI+ +++C +DVV
Sbjct: 277 AACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSC---------------LDVV 321
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
A AR LFD D SWN MI+GY K G +E A LFN +P +D
Sbjct: 322 A----------------ARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKD 365
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW+AMI+G V + +AL +F+ MR+ +PD+VT++S+++AC +L LE GK VH
Sbjct: 366 NVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHE 425
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ + VL G +LIDMY KCG +E A+EVF + ++ W+ +I GLA +G
Sbjct: 426 YIRQYQYNITIVL-GTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVT 484
Query: 353 ESIAMFREMQRLKVR-PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411
S+ MF EM+ + P+EITF GVL AC H G VEEG+++FKLM+++Y I PNIRHYG
Sbjct: 485 RSLDMFSEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGC 544
Query: 412 ---------------------------------------HGDVELGRLANKRLLNMRKDE 432
H D E+G K+L+ +
Sbjct: 545 MVDLLGRAGYVREAEDLIQSMPMSPDVPAWGALLGACWKHSDSEVGERVGKKLVKLDPHH 604
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
G +LSNIYAS G W V+ +R M + K GCS++E+
Sbjct: 605 DGFQTMLSNIYASEGMWQCVKDLRGSMKQ-HVAKVAGCSVVES 646
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/427 (27%), Positives = 212/427 (49%), Gaps = 41/427 (9%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSV----VIPGAINYAHKMFVKITE 67
+C + R L +I A +G +D+ +A R L+++ S ++P ++++ ++F +
Sbjct: 12 SRCRSARHLLEIHAQFLASGLLADAYAASRLLLFTTSATAARLLPQPLHHSLQLFRLVRS 71
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P+ F NT+IR + + P LY M P+ +T + AC G V
Sbjct: 72 PNAFTCNTLIRAALRQGLPHLCFPLYASMPA---APDTYTHPLLAAACAARGDAREGRQV 128
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H VK+GF N ++RN+L++ ++ CG + A +FD D V+W+++ A Y R G++
Sbjct: 129 HSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVRDGDV 188
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
A +F MP R + + M+ +A+ G +E+A +F+ RD +W AMIS +
Sbjct: 189 EQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERND 248
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+ +AL +F +MR G D+ M+S++ ACA ++ G+ H ++ G ++V
Sbjct: 249 LFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLG-SRVNVQ 307
Query: 308 NALIDMYAKC-------------------------------GSIERAIEVFLGMRDRDVS 336
NALI MY+ C G +E A +F M D+D
Sbjct: 308 NALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNV 367
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+WS +I G + + E++ +F M+ +++P E+T V V+ AC++ +E+GK + +
Sbjct: 368 SWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYI 427
Query: 397 RD-EYNI 402
R +YNI
Sbjct: 428 RQYQYNI 434
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/551 (26%), Positives = 264/551 (47%), Gaps = 84/551 (15%)
Query: 30 INGFNSDSSALRELIYSGSVV----IPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQN 85
++GF+ S + + S +++ G I ++F K+ + + II G +
Sbjct: 146 LHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGY 205
Query: 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145
++ + +++M + + + TF+ LKA + G +H + +K GF+ + FV N+
Sbjct: 206 NMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINT 265
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP------- 198
L + CG + LF+ DVV+W++L + Y + GE A F M
Sbjct: 266 LATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPN 325
Query: 199 --------------------------------VRDLVSWNVMITGYAKQGEMEKANELFN 226
V L N +IT Y+K G ++ A+ +F+
Sbjct: 326 KYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFH 385
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+ ++D++SW+ +IS Y G K+A + MR G +P++ + S+L+ C + LE
Sbjct: 386 GITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQ 445
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
GK+VH LL + ++H +A+I MY+KCGS++ A ++F GM+ D+ +W+ +I G A
Sbjct: 446 GKQVHAHLLCIGIDHEAMVH-SAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYA 504
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HG+++E+I +F ++ + ++P + F+GVL AC+HAG V+ G YF LM + Y I P+
Sbjct: 505 EHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSK 564
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HYG VHGDV+ GR ++LL
Sbjct: 565 EHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQ 624
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNL 487
+ + +G ++ L+NIYA++G W +RKLM + K+ G S + +D+ ++
Sbjct: 625 LDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDQ-LNAFVAGD 683
Query: 488 KPKPNSGNLDT 498
+ P S ++ T
Sbjct: 684 QAHPQSEHITT 694
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 176/388 (45%), Gaps = 51/388 (13%)
Query: 49 VVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP----N 104
+V G + A MF K+T D + T+I G + + +A+ L++ M + P +
Sbjct: 67 LVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMW---VHPGPQRD 123
Query: 105 KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD 164
+F S LKAC + G +HG VK G + FV ++LI + G + +F+
Sbjct: 124 QFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFE 183
Query: 165 GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW------------------- 205
+VV+W+++ AG G F EM R V +
Sbjct: 184 KMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEM-WRSKVGYDSHTFAIALKASADSSLLH 242
Query: 206 ---------------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
N + T Y K G+ + LF ++ DVVSW +IS YV
Sbjct: 243 HGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYV 302
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G + A+E F+ MR P+ T +++++CA+L + G+++H +L + G+
Sbjct: 303 QMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRL--GLVNA 360
Query: 305 LH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
L N++I +Y+KCG ++ A VF G+ +D+ +WST+I + G+A+E+ M+R
Sbjct: 361 LSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRR 420
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKK 391
+P E VL C +E+GK+
Sbjct: 421 EGPKPNEFALSSVLSVCGSMALLEQGKQ 448
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 99/194 (51%), Gaps = 4/194 (2%)
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
V +++ N + KQG++ KA +F+++ RD +SW +I+GYV + +AL +F
Sbjct: 54 VHNMLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSN 113
Query: 259 MR-SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAK 316
M G + D + L ACA ++ G+ +H + SG + V +ALIDMY K
Sbjct: 114 MWVHPGPQRDQFMISVALKACALGVNICFGELLHG--FSVKSGLIHSVFVSSALIDMYMK 171
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
G IE+ VF M R+V +W+ +I GL G+ E + F EM R KV TF
Sbjct: 172 VGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIA 231
Query: 377 LVACSHAGKVEEGK 390
L A + + + GK
Sbjct: 232 LKASADSSLLHHGK 245
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 145/348 (41%), Gaps = 27/348 (7%)
Query: 4 NRHRSSRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYA 58
N++ + + C NL K QI V G + S +I YS G + A
Sbjct: 325 NKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKC----GLLKSA 380
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
+F IT D ++TII +Q +A + M + KPN+F S VL C +
Sbjct: 381 SLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSM 440
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
G VH ++ G + V +++I ++ CG + AS +F+G D+++W+++
Sbjct: 441 ALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMI 500
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANEL-----------FNE 227
GYA G A +LF+++ L VM G +L +
Sbjct: 501 NGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRI 560
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
P ++ + +I +LC + + E +RS+ DDV +LL AC GD++ G
Sbjct: 561 SPSKE--HYGCLID--LLCRAGRLS-EAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRG 615
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+ LL + A L ++YA G + A + M+ + V
Sbjct: 616 RWTAEQLLQLDPNSAGT--HITLANIYAAKGRWKEAAHIRKLMKSKGV 661
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 119/305 (39%), Gaps = 37/305 (12%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
KQ+ A + G + ++ +I S G++ A K+F + D + +I G A
Sbjct: 447 KQVHAHLLCIGIDHEAMVHSAIISMYSKC--GSVQEASKIFNGMKINDIISWTAMINGYA 504
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
+ +A+ L+ ++ +KP+ F VL AC H +V GF +
Sbjct: 505 EHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACN-----------HAGMVDLGFYYFML 553
Query: 142 VRN------------SLIYFHANCGDLNTAS-VLFDGDAKMDVVAWSSLTAGYARRGELS 188
+ N LI G L+ A ++ D V WS+L G++
Sbjct: 554 MTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVD 613
Query: 189 MARSLFDEMPVRDLVSWNVMIT---GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
R +++ D S IT YA +G ++A + + + V+ G+
Sbjct: 614 RGRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKER----GWSW 669
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG-KKVHCTLLDMTSGVAKV 304
+N Q ++ + T+L LL+ A++GD + + +H + D+ +
Sbjct: 670 VNVNDQLNAFVAGDQAHPQSEHITTVLKLLS--ANIGDAQQEIRSLHEDVEDLAYSCI-L 726
Query: 305 LHGNA 309
HGNA
Sbjct: 727 SHGNA 731
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 162/565 (28%), Positives = 267/565 (47%), Gaps = 91/565 (16%)
Query: 3 TNRHRSSRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAH 59
TN + + + C + +K QI A + +G D L+ V G + A
Sbjct: 158 TNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALV--AMYVRFGKMPEAA 215
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
+F + D +N+++ G Q+ +A+ + ++ +KP++ + ++ A RL
Sbjct: 216 VIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLG 275
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
Y G +H +K GF+ N V N+LI +A C ++ FD A D+++W++ A
Sbjct: 276 YLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAA 335
Query: 180 GYARRGELSMARSLFDEMPVR--------------------------------------D 201
GYA+ A L ++ + D
Sbjct: 336 GYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSD 395
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
V N +I Y + G ++ A +F + +DVVSW +MIS YV G+ +ALE+F M+
Sbjct: 396 PVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG---NALIDMYAKCG 318
G PD VT++S+L+A L L+ GK++H ++ +L G N L+DMYA+CG
Sbjct: 456 TGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRK----GFILEGSISNTLVDMYARCG 511
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
S+E A ++F ++R++ W+ +I HG+ E ++ +F M+ K+ P ITF+ +L
Sbjct: 512 SVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLY 571
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------- 410
ACSH+G V EGK + ++M+ EY +EP HY
Sbjct: 572 ACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTP 631
Query: 411 -----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459
+H + E+G +A ++LL + D G+YVL+SN++A+ G W VE+VR M
Sbjct: 632 EVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRM 691
Query: 460 DDSDIKKQPGCSLIEADDK--AFLQ 482
S + K PGCS IE +K AFL
Sbjct: 692 KGSGLTKNPGCSWIEVGNKIHAFLS 716
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 192/384 (50%), Gaps = 46/384 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++ A +F K++E F +N ++ G + L A+ +Y +M + + +TF +L
Sbjct: 6 GSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLL 65
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKMDV 171
KAC + G +HG +KYG + FV NSL+ +A C D+N A LFD + DV
Sbjct: 66 KACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDV 125
Query: 172 VAWSSLTAGYARRGELSMARSLFDEM---------------------------------- 197
V+W+S+ + Y+ G + A LF EM
Sbjct: 126 VSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAA 185
Query: 198 -----PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
V D+ N ++ Y + G+M +A +F + +D+V+WN+M++G++ G+ +A
Sbjct: 186 ILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEA 245
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
LE F ++++ +PD V+++S++ A LG L GK++H + + +L GN LID
Sbjct: 246 LEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIK-NGFDSNILVGNTLID 304
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKC + F M +D+ +W+T G A + +++ + R++Q ++ + T
Sbjct: 305 MYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQ-MEGMDVDAT 363
Query: 373 FVG-VLVAC---SHAGKVEEGKKY 392
+G +L+AC + GK++E Y
Sbjct: 364 MIGSILLACRGLNCLGKIKEIHGY 387
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 131/282 (46%), Gaps = 41/282 (14%)
Query: 150 HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----------- 198
+ CG + A ++FD ++ + W+++ GY GE A ++ EM
Sbjct: 2 YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61
Query: 199 ---------VRDLVSW-------------------NVMITGYAKQGEMEKANELFNEVPK 230
V DL N ++ YAK ++ A +LF+ +
Sbjct: 62 PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121
Query: 231 R-DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
R DVVSWN++IS Y GM +AL +F EM G + T + L AC D +++G +
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
+H +L + V V NAL+ MY + G + A +F + +D+ TW++++ G +G
Sbjct: 182 IHAAILK-SGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
E++ F ++Q ++P +++ + ++VA G + GK+
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKE 282
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY KCGS+ A +F M +R + TW+ ++GG +G A ++ M+REM+ L V T
Sbjct: 1 MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60
Query: 373 FVGVLVACSHAGKVEE 388
F +L AC G VE+
Sbjct: 61 FPVLLKAC---GIVED 73
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 177/608 (29%), Positives = 287/608 (47%), Gaps = 123/608 (20%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVKI 65
R L C ++ QI A + + G +++ L + S +++++H +F +I
Sbjct: 16 RIKSLLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTLFTQI 75
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVF-LYTQMEKCSIKPNKFTFSFVLKACTRLLYR--N 122
T PD F++N II+ +Q +P F L+ M S+ P+ FTF F+LKAC +L
Sbjct: 76 TNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAPQ 135
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
GF VH +++ GF + FV N+L+ F+ GD+ A +FD D V+++++ G+A
Sbjct: 136 FGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFA 195
Query: 183 RRGELSMARSLFDEM-----------------------------PVRDLV-------SWN 206
R+G++S +F EM V LV N
Sbjct: 196 RKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGN 255
Query: 207 VMITG-----YAKQGEMEKANELFNEV-PKRDVVS------------------------- 235
V++ YAK G + A + + V P + VV+
Sbjct: 256 VLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQM 315
Query: 236 -------WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
W AMISGY G ++ALE+F ++ +G +PD+V +++ L+ACA LG LE+G+
Sbjct: 316 GERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGR 375
Query: 289 KVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST--WSTLIGG 344
++H + T + + +A++DMYAKCGSI+ A++VF D +T ++++I G
Sbjct: 376 RIHRQYAGENWTCSINRGF-TSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISG 434
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
LA HG E + +F EM L ++P ITFV VL AC H G V+ GKK F+ M Y + P
Sbjct: 435 LAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVYGVSP 494
Query: 405 NIRHYG---------------------------------------VHGDVELGRLANKRL 425
+ HYG VHGDV L R+A+ L
Sbjct: 495 EMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALARVASYEL 554
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLF 485
+ ++ D YV+LSN+ + + + +RK +D+ I+K PG S +E +++ ++L
Sbjct: 555 VELQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEM-NRSLHKFLA 613
Query: 486 NLKPKPNS 493
K P +
Sbjct: 614 GDKSHPEA 621
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 163/537 (30%), Positives = 254/537 (47%), Gaps = 85/537 (15%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVK 64
R++ L C + R ++ A G + D + L Y+ S G ++ A + +
Sbjct: 32 RAAALLAGCASARRASELHAAAVRAGVDQDKAVDFRLQRAYAAS----GRLDLAVALLRR 87
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFTFSFVLKACTRLLYRNM 123
+P Y + I + A+ L ++M + P T S L AC L +
Sbjct: 88 TPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACGGL---AV 144
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G +HG VK +V +L+ +A GD A VLFDG
Sbjct: 145 GRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDG------------------ 186
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
P +VS M+T YAK G ++ A LF+ +P +D++ WNAM+ GY
Sbjct: 187 ------------MQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGY 234
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
G +AL +F M G PD+V+++ L+A A LG E G+ +H + + +S +
Sbjct: 235 TQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVR 294
Query: 304 VLH--GNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ G ALIDMY KCGS+E A+ VF LG DRD+ W+ ++ G A HG + E++A F
Sbjct: 295 LNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFG 354
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
+++ + PT+ITF+GVL ACSH+G V+EG++ F+ M +EY IEP + HYG
Sbjct: 355 QLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRA 414
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
+H ++ELG+ L+ SG YVLL
Sbjct: 415 GRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLL 474
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
SN+YA+ G W V +VR +M S I+K+PGCS +E + ++++ + P + +
Sbjct: 475 SNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRR-VVEFVAGDRSHPRAAEI 530
>gi|296086392|emb|CBI31981.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 158/513 (30%), Positives = 258/513 (50%), Gaps = 52/513 (10%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + CT + Q+ + G + L +L+ S +YA +F +I P+
Sbjct: 37 LLESCTQTSEICQVHGSMVKTGLVNVPFTLSKLLASSI----QDTDYAASIFNQIPSPNL 92
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
FM+NT++RG + S +P A ++ + + ++F+F LKAC R L G +HG
Sbjct: 93 FMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKACARELAYETGQGIHGV 152
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKMDVVAWSSLTAGYARRGELSM 189
+V+ G V+N+L++F+ CG + A LFD K+D+V+W++L GY + +M
Sbjct: 153 VVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGYLQVPHPTM 212
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
LF EM +DL +I YA G ++ +++F +VPK+DVV WN +I GY +
Sbjct: 213 VTCLFGEMCRKDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLL 272
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
+++L + + M+ +P+ T++ LL+ACA G VG + + + + VL G A
Sbjct: 273 QESLSLLQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVL-GTA 331
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
L+DMY KCG +E+AI+VF M +DV +W+ +I G HG A+ +I +F M+ RP
Sbjct: 332 LVDMYCKCGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPN 391
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
E+TF+ VL ACSH G V EG + + M EY P + HYG
Sbjct: 392 EVTFLAVLNACSHGGMVVEGISFLEKMVREYGFSPKVEHYGCMIDLLGRAGLLEEAHNLI 451
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG--- 447
V+G+V+LG + LL + + D +LLS+ YA G
Sbjct: 452 KSLPIEGDATGWRALLAACRVYGNVDLGECVKRVLLEIFDEHPTDSILLSSTYAIAGRLP 511
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
++ R+++++ + + K+ GC A D F
Sbjct: 512 DYTRMQEIK----EEKMMKEAGCRYPNAQDPKF 540
>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
Length = 567
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/447 (33%), Positives = 231/447 (51%), Gaps = 52/447 (11%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D +N+II G + LDA Y + K N T++ +L RL + +
Sbjct: 79 DVVSWNSIIAG-CLAHGDLDAASAYF---AGAPKRNVATWNAMLAGLLRLGRADDADRLF 134
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G++ K N +++ A G++ A +FD ++V+W+++ +GY G
Sbjct: 135 GEMPKR----NVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFV 190
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
A LF+ MP +++V+ MIT Y KQG++E A LF+ + +DV+SWN MI+GYV G
Sbjct: 191 EATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGH 250
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD--MTSGVAKVLH 306
++A+ + M G +PD T++++LTAC+ L L GK H + + SG++
Sbjct: 251 GEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGIS---F 307
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
NAL+ MY+KCG++ + VF+ +R +D+ +W+T+I A HG ++ IA+F EM+ +
Sbjct: 308 SNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGL 367
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------- 410
P +ITF+ VL AC H GKV+ K F LM +Y I P HY
Sbjct: 368 IPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKAS 427
Query: 411 -----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
+HG+V+LG LA K L+ + SG YV+LSNIYA+ G
Sbjct: 428 SYIKDMPLEAEKNVWGSLLGACQMHGNVQLGELAAKMLVQSDSESSGPYVILSNIYAAAG 487
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIE 474
W +V +VR M + +KKQPG S E
Sbjct: 488 MWGQVNQVRGQMKERGVKKQPGYSWTE 514
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 138/281 (49%), Gaps = 34/281 (12%)
Query: 140 RFVR-NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG--ELSMARSLFDE 196
R +R N I A GD+ A +FD DVV+W++L R G L AR LFDE
Sbjct: 14 RLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDE 73
Query: 197 -MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
MP RD+VSWN +I G G+++ A+ F PKR+V +WNAM++G + G A +
Sbjct: 74 AMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRL 133
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD--------MTSGVAK---- 303
F EM + + V+ +++ A G++ ++V + D M SG +
Sbjct: 134 FGEM----PKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMF 189
Query: 304 --------------VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
V+ A+I Y K G +E A +F G+R +DV +W+T+I G +G
Sbjct: 190 VEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNG 249
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
EE++ + M R V+P T + VL ACS + +GK
Sbjct: 250 HGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGK 290
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 152/332 (45%), Gaps = 30/332 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F I D +NT+I G + + +A+ L+ M + +KP+ T VL
Sbjct: 218 GDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVL 277
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC+ L G H +K E N+L+ ++ CG++ + ++F D+V
Sbjct: 278 TACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIV 337
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNEV 228
+W+++ A YA+ G+ +LF EM + L+ ++ +++ G+++ + +LF+ +
Sbjct: 338 SWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLM 397
Query: 229 PKRDVVSWNA-----MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+ +S A ++ G ++A ++M E+ SLL AC G+
Sbjct: 398 SSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEKN---VWGSLLGACQMHGN 454
Query: 284 LEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS----- 336
+++G+ L+ D S V+ L ++YA G + +V M++R V
Sbjct: 455 VQLGELAAKMLVQSDSESSGPYVI----LSNIYAAAGMWGQVNQVRGQMKERGVKKQPGY 510
Query: 337 TWSTL-------IGGLAFHGFAEESIAMFREM 361
+W+ + +GG A H + I+ R++
Sbjct: 511 SWTEIANEVHMFVGGDASHPEMRKIISELRKI 542
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 35/237 (14%)
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK--QALE 254
+ R L+ N I+ A+ G++ A +F+ +P RDVVSWNA+++ G + A
Sbjct: 10 LAARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARR 69
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVG--------KKVHCTLLDMTSGVAK--- 303
+F+E ++ R D V+ S++ C GDL+ K+ T M +G+ +
Sbjct: 70 LFDE--AMPSR-DVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGR 126
Query: 304 ---------------VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
V+ ++D A+ G + RA EVF M DR++ +W+ +I G +
Sbjct: 127 ADDADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVEN 186
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
G E+ +F M V + ++ + G VE ++ F +R + I N
Sbjct: 187 GMFVEATKLFEAMPEKNV----VACTAMITSYCKQGDVESARRLFDGIRAKDVISWN 239
>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 610
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/472 (31%), Positives = 243/472 (51%), Gaps = 77/472 (16%)
Query: 45 YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNP-LDAVFLYTQMEKCSIKP 103
Y+ S ++P A++ +F + D ++Y++++ + S +P L L + ++ P
Sbjct: 48 YAKSRLLPDALH----LFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHP 103
Query: 104 NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF 163
+ F S V RL R +G +H V + + V++SL+ + CG +
Sbjct: 104 DHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPD------ 157
Query: 164 DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANE 223
DG R +FD M ++ V W +++GYA G E+A +
Sbjct: 158 DG-------------------------RKVFDSMSAKNSVVWTALVSGYASNGRSEEALQ 192
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA-CADLG 282
LF +P R++ +W A+ISG V G + A+E+F EMR G R DD +LS++ ADL
Sbjct: 193 LFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLA 252
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+G+++H + + + ++ ++ GNALIDMY+KC I A EVF G+ RDV +W+T++
Sbjct: 253 AFVLGRQLHGSTMRL-GFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMV 311
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G A HG AEE++A++ M +P E+TFVG++ ACSHAG V++G++ F+ M++EY I
Sbjct: 312 VGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGI 371
Query: 403 EPNIRHYGV---------------------------------------HGDVELGRLANK 423
P ++HY + D E+ +
Sbjct: 372 TPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISD 431
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
+LL +R +S Y+LLSN+YA G+W+ V KVRK M +I+K+PG S IEA
Sbjct: 432 KLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEA 483
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RP 266
+++ YAK + A LF+E P+RD+ ++++++ + AL + M S P
Sbjct: 44 LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHP 103
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D + S+ + A L +G+++H + V+ ++L+DMY KCGS + +V
Sbjct: 104 DHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVK-SSLVDMYCKCGSPDDGRKV 162
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
F M ++ W+ L+ G A +G +EE++ +FR M
Sbjct: 163 FDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM 197
>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/483 (31%), Positives = 244/483 (50%), Gaps = 60/483 (12%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
++ A +F ++ E + +NT++ A + A L+ M + ++++
Sbjct: 118 VDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVRS 177
Query: 115 CT----RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
T R L+ M E N ++I A G + A LFDG + +
Sbjct: 178 GTMDEARRLFERMP------------ERNVMSWTTMISGLARSGSADEARALFDGMPERN 225
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
VV+W+++ +GYAR + A LF MP RD+ SWN+MITG+ + +++KA ELF+E+PK
Sbjct: 226 VVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPK 285
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
R+VVSW M++G + ++ AL++F M G RP+ VT L + A ++L L G++V
Sbjct: 286 RNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQV 345
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
H + + ++L+ +YAKCG I A +VF ++DV +W+ +I A HG
Sbjct: 346 HQMICKTPFQFDNFIE-SSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGA 404
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
E+IA++ +MQ + +P ++T+VG+L ACSH+G V+EG + F+ M + +I HY
Sbjct: 405 GVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYS 464
Query: 411 ----------------------------------------VHGDVELGRLANKRLLNMRK 430
HG+ +G LA + LL
Sbjct: 465 CLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLLEAEP 524
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPK 490
D +G Y LLSNIYAS G+W K+R M+D +KKQPGCS IE +K ++F + K
Sbjct: 525 DNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIELANKV---HVFVARDK 581
Query: 491 PNS 493
+S
Sbjct: 582 SHS 584
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 145/284 (51%), Gaps = 41/284 (14%)
Query: 145 SLIYFHANCGDLNTASVLFD-GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
+++ +A G L+ AS L DA+ +VV W++L +GYAR + AR+LFD MP R++V
Sbjct: 75 AMVAAYARQGQLHEASALLHRPDARRNVVTWTALLSGYARARRVDEARALFDRMPERNVV 134
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN M+ YA G M A LF+ +P RD SWN +++ V G +A +FE M
Sbjct: 135 SWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVRSGTMDEARRLFERM---P 191
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
ER + ++ ++++ A G + + + + + V+ NA+I YA+ I+ A
Sbjct: 192 ER-NVMSWTTMISGLARSGSADEARALFDGMPERN-----VVSWNAMISGYARNLRIDEA 245
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV----------------- 366
+++F+ M +RDV++W+ +I G + +++ +F EM + V
Sbjct: 246 LDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESE 305
Query: 367 --------------RPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
RP ++TF+G + A S+ + EG++ +++
Sbjct: 306 MALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMI 349
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 10/209 (4%)
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEM 218
A+ +F DA V + A A G + AR LFD P RD+VSW M+ YA+QG++
Sbjct: 27 AAAVFSTDAFSHVQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQL 86
Query: 219 EKANELFNEV-PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
+A+ L + +R+VV+W A++SGY +A +F+ M ER + V+ ++L A
Sbjct: 87 HEASALLHRPDARRNVVTWTALLSGYARARRVDEARALFDRM---PER-NVVSWNTMLEA 142
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
A G + C L D V N L+ + G+++ A +F M +R+V +
Sbjct: 143 YASAGRMGAA----CALFDGMP-VRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMS 197
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKV 366
W+T+I GLA G A+E+ A+F M V
Sbjct: 198 WTTMISGLARSGSADEARALFDGMPERNV 226
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 151/366 (41%), Gaps = 78/366 (21%)
Query: 44 IYSGSVVIPGAIN-----YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98
+ S +++I G I A ++F ++ + + + T++ G Q A+ ++ M
Sbjct: 257 VASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLV 316
Query: 99 CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158
I+PN+ TF + A + L + G VH I K F+F+ F+ +SL+ +A CG++
Sbjct: 317 DGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRL 376
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEM 218
A +FD + DV++W+ + A YA G A +L+++M Q
Sbjct: 377 ARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKM-----------------QENR 419
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM---RSVGERPDDVTMLSLL 275
K N+ V++ ++S G+ + L +FE M +S+ R +
Sbjct: 420 YKPND----------VTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDE-------- 461
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
H + LID+ ++ G ++ A + G++ +
Sbjct: 462 ------------------------------HYSCLIDLCSRAGRLDDAKRLINGLKLKPT 491
Query: 336 ST--WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI-TFVGVLVACSHAGKVEEGKKY 392
S+ WS L+GG HG ESI L+ P T+ + + AGK +E K
Sbjct: 492 SSTVWSALLGGCNAHG--NESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKI 549
Query: 393 FKLMRD 398
M D
Sbjct: 550 RSEMND 555
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 155/514 (30%), Positives = 252/514 (49%), Gaps = 83/514 (16%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTIIRGSAQ 82
V I+ + S L + +Y GS ++ G +N A ++F ++ + + +N++I Q
Sbjct: 172 VQIHSLIAKSPCLSD-VYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQ 230
Query: 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFV 142
+ ++A+ ++ M + ++P++ T + V+ AC L +G VH ++VK +
Sbjct: 231 NGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDK-----L 285
Query: 143 RNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL 202
RN D++ ++ YA+ + AR +FD MP+R++
Sbjct: 286 RN-------------------------DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNV 320
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
++ M++GYA + A +F ++ +R+VVSWNA+I+GY G N++AL +F ++
Sbjct: 321 IAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRE 380
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD----MTSGVAK-VLHGNALIDMYAKC 317
P T ++L ACADL DL +G + H +L SG + GN+LIDMY KC
Sbjct: 381 SVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKC 440
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
G +E VF M +RD +W+ +I G A +G+ E++ +FREM +P IT +GVL
Sbjct: 441 GCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVL 500
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------- 410
AC HAG VEEG+ YF M ++ + P HY
Sbjct: 501 SACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPD 560
Query: 411 ------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
VH ++ LG+ ++L + SG YVLLSN+YA G+W VRKL
Sbjct: 561 SVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKL 620
Query: 459 MDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPN 492
M + KQPGCS I+ A ++F +K K +
Sbjct: 621 MRKEGVTKQPGCSWIKIPGHA---HVFMVKDKSH 651
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 147/285 (51%), Gaps = 33/285 (11%)
Query: 108 FSFVLKACTRLLYRNMGF-CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
F+ +L +C +L + CVH ++K GF F++N LI +A CG L LFD
Sbjct: 22 FAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKM 81
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+ +V W+S+ G + G L A SLF MP RD +WN M++G+A+ E+A F
Sbjct: 82 PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+ K G+VL ++ T S L+AC+ L D+
Sbjct: 142 MMHKE----------GFVL---------------------NEYTFASGLSACSGLNDMNR 170
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G ++H +L+ + ++ V G+AL+DMY+KCG++ A +VF M DR+V +W++LI
Sbjct: 171 GVQIH-SLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYE 229
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+G A E++ +F+ M V P E+T V+ AC+ ++ G++
Sbjct: 230 QNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQE 274
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/399 (34%), Positives = 216/399 (54%), Gaps = 37/399 (9%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+ C N + LKQI A + D +R+L S G I+YA +F ++ +PD F
Sbjct: 28 QNCNNFKQLKQIHARIIRFRLTHDQLLIRKLCQISSSY--GKIDYASLVFDQLNDPDIFT 85
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +IR S P ++FL+ M C P+KFT+ FV+ AC + G HG +
Sbjct: 86 WNVMIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVINACIASGVIDFGRLTHGLAI 145
Query: 133 KYGFEFNRFVRNSL--IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
K GF + +V+N++ +YF GD++ +FD +VV+W+++ AG G+L A
Sbjct: 146 KMGFWSDVYVQNNMMNLYFKIG-GDVDDGWKVFDKMRVRNVVSWTTVIAGLVACGKLDTA 204
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +F+ +P +++VSW MI GY K N+ P +
Sbjct: 205 REVFERIPSKNVVSWTAMINGYVK-----------NDNPIK------------------- 234
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
A ++FE M RP++ T++SL+ AC DLG L++G+++H L + L G AL
Sbjct: 235 -AFDLFERMLIDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDFALKNGFELGPFL-GTAL 292
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMY+KCGS++ A++VF M R+++TW+T++ HGF E + +F+EM++ V P
Sbjct: 293 VDMYSKCGSLDAAVKVFGLMEVRNLATWNTMLTSFGVHGFGNEVLDLFKEMEKAGVVPDA 352
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
ITFVGVL AC +E G+KYF LM + Y++ P + HY
Sbjct: 353 ITFVGVLSACVQINDLELGQKYFSLMTEHYSLTPILEHY 391
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 62/274 (22%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
+V G ++ A ++F +I + + +I G ++ NP+ A L+ +M +++PN+F
Sbjct: 193 AGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDNVRPNEF 252
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
T ++KACT L +G +H +K GFE F+ +L+ ++ CG L+ A
Sbjct: 253 TLVSLIKACTDLGSLKLGRRMHDFALKNGFELGPFLGTALVDMYSKCGSLDAAV------ 306
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+F M VR+L +WN M+T + G
Sbjct: 307 -------------------------KVFGLMEVRNLATWNTMLTSFGVHG---------- 331
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+ L++F+EM G PD +T + +L+AC + DLE+
Sbjct: 332 ---------------------FGNEVLDLFKEMEKAGVVPDAITFVGVLSACVQINDLEL 370
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
G+K + + S + H ++ +Y + +
Sbjct: 371 GQKYFSLMTEHYSLTPILEHYTCMVGLYTRANEL 404
>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/472 (31%), Positives = 243/472 (51%), Gaps = 77/472 (16%)
Query: 45 YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNP-LDAVFLYTQMEKCSIKP 103
Y+ S ++P A++ +F + D ++Y++++ + S +P L L + ++ P
Sbjct: 130 YAKSRLLPDALH----LFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHP 185
Query: 104 NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF 163
+ F S V RL R +G +H V + + V++SL+ + CG +
Sbjct: 186 DHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPD------ 239
Query: 164 DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANE 223
DG R +FD M ++ V W +++GYA G E+A +
Sbjct: 240 DG-------------------------RKVFDSMSAKNSVVWTALVSGYASNGRSEEALQ 274
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA-CADLG 282
LF +P R++ +W A+ISG V G + A+E+F EMR G R DD +LS++ ADL
Sbjct: 275 LFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLA 334
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+G+++H + + + ++ ++ GNALIDMY+KC I A EVF G+ RDV +W+T++
Sbjct: 335 AFVLGRQLHGSTMRL-GFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMV 393
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G A HG AEE++A++ M +P E+TFVG++ ACSHAG V++G++ F+ M++EY I
Sbjct: 394 VGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGI 453
Query: 403 EPNIRHYGV---------------------------------------HGDVELGRLANK 423
P ++HY + D E+ +
Sbjct: 454 TPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISD 513
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
+LL +R +S Y+LLSN+YA G+W+ V KVRK M +I+K+PG S IEA
Sbjct: 514 KLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEA 565
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RP 266
+++ YAK + A LF+E P+RD+ ++++++ + AL + M S P
Sbjct: 126 LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHP 185
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D + S+ + A L +G+++H + V+ ++L+DMY KCGS + +V
Sbjct: 186 DHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVK-SSLVDMYCKCGSPDDGRKV 244
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
F M ++ W+ L+ G A +G +EE++ +FR M
Sbjct: 245 FDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM 279
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 154/544 (28%), Positives = 266/544 (48%), Gaps = 87/544 (15%)
Query: 22 KQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIR 78
+Q+ + V G +SD AL +L + S I AH+MF+ + ++N ++
Sbjct: 334 EQLHSYVIKAGISSDMIVEGALLDLYVNCS-----DIKTAHEMFLTAQTENVVLWNVMLV 388
Query: 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEF 138
+ N ++ ++ QM+ + PN+FT+ +L+ CT + ++G +H +++K GF+F
Sbjct: 389 AFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQF 448
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
N +V + LI +A G L+TA V+ + DVV+W++L +GYA+ + A F EM
Sbjct: 449 NVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEML 508
Query: 199 VR---------------------------------------DLVSWNVMITGYAKQGEME 219
R DL N +++ YA+ G ++
Sbjct: 509 NRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIK 568
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
+A F ++ +D +SWN +ISG+ G + AL++F +M T S ++A A
Sbjct: 569 EAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAA 628
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
++ +++ GK++H ++ + + NALI YAKCGSIE A F M +++ +W+
Sbjct: 629 NIANIKQGKQIHAMIIKRGFD-SDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWN 687
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+I G + HG+ E++ +F +M+++ P +TFVGVL ACSH G V +G YF+ M E
Sbjct: 688 AMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKE 747
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
+ + P HY VH +VE+G
Sbjct: 748 HGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEF 807
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
A + LL + ++S YVLLSN+YA G+W+ ++ R++M + +KK+PG S IE +
Sbjct: 808 AAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVH 867
Query: 481 LQYL 484
Y+
Sbjct: 868 AFYV 871
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/413 (24%), Positives = 186/413 (45%), Gaps = 42/413 (10%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+R +QI A + +G LI G G I A K+F + D+ + +I
Sbjct: 128 IRYAEQIHARIICHGLLCSPIISNPLI--GLYAKNGLIISARKVFDNLCTKDSVSWVAMI 185
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
G +Q+ +A+ L+ +M I P + FS VL CT++ ++G +H + KYG
Sbjct: 186 SGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSS 245
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+V N+L+ ++ + +A +F D V+++SL +G A++G A LF +M
Sbjct: 246 LETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM 305
Query: 198 P----------------------------------VRDLVSWNVMITG-----YAKQGEM 218
++ +S ++++ G Y ++
Sbjct: 306 KRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDI 365
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+ A+E+F +VV WN M+ + ++ +F +M+ G P+ T S+L C
Sbjct: 366 KTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTC 425
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
+G L++G+++H ++ T V + LIDMYAK G ++ A + + + DV +W
Sbjct: 426 TSVGALDLGEQIHTQVIK-TGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSW 484
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+ LI G A H E++ F+EM ++ I F + AC+ + +G++
Sbjct: 485 TALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQ 537
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 178/373 (47%), Gaps = 43/373 (11%)
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT--R 117
K+F + ++ II G + + + L++ M + ++ P + +F+ VL+AC+ R
Sbjct: 66 KVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHR 125
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+ R +H +I+ +G + + N LI +A G + +A +FD D V+W ++
Sbjct: 126 IGIR-YAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAM 184
Query: 178 TAGYARRGELSMARSLFDEM------PVRDLVS--------------------------- 204
+G+++ G A LF EM P + S
Sbjct: 185 ISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGS 244
Query: 205 ------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
N ++T Y++ A ++F+++ +D VS+N++ISG G + ALE+F +
Sbjct: 245 SLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTK 304
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M+ +PD VT+ SLL+ACA G L G+++H ++ ++ G AL+D+Y C
Sbjct: 305 MKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEG-ALLDLYVNCS 363
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
I+ A E+FL + +V W+ ++ ES +FR+MQ + P + T+ +L
Sbjct: 364 DIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILR 423
Query: 379 ACSHAGKVEEGKK 391
C+ G ++ G++
Sbjct: 424 TCTSVGALDLGEQ 436
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 102/193 (52%), Gaps = 4/193 (2%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N ++ Y G+++ ++F ++P R V SW+ +ISG++ M+ + L++F M
Sbjct: 49 NKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVS 108
Query: 266 PDDVTMLSLLTACAD--LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
P +++ S+L AC+ +G + +++H ++ + ++ N LI +YAK G I A
Sbjct: 109 PTEISFASVLRACSGHRIG-IRYAEQIHARIICHGLLCSPII-SNPLIGLYAKNGLIISA 166
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+VF + +D +W +I G + +G+ EE+I +F EM + PT F VL C+
Sbjct: 167 RKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKI 226
Query: 384 GKVEEGKKYFKLM 396
+ G++ L+
Sbjct: 227 KLFDVGEQLHALV 239
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 37/199 (18%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMY 73
N++ KQI A++ GF+SD LI Y+ G+I A + F ++ E + +
Sbjct: 631 ANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKC----GSIEDARREFCEMPEKNDVSW 686
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
N +I G +Q +AV L+ +M++ PN TF VL AC+ +
Sbjct: 687 NAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHV--------------- 731
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
V L YF + + +D++ +R G LS AR
Sbjct: 732 ------GLVTKGLGYFESMSKEHGLVPKPAHYACVVDLI---------SRAGFLSRARKF 776
Query: 194 FDEMPVR-DLVSWNVMITG 211
+EMP+ D W +++
Sbjct: 777 IEEMPIEPDATIWRTLLSA 795
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 233/463 (50%), Gaps = 77/463 (16%)
Query: 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145
P DA+ ++ M + + FT+SF++KA + + VH +VK G + FV N+
Sbjct: 114 PRDALAAFSAMPR----RDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNA 168
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
LI ++ G + A +FD + DVV+W++ A R GEL+ R LFDEMP +D VSW
Sbjct: 169 LIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSW 228
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV--------------------- 244
N ++ GY K GE+E A ELF +P+R+VVSW+ M+SGY
Sbjct: 229 NTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLV 288
Query: 245 -------LC---GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
C G+ +A ++F +M+ D ++S+L ACA+ G L +GK++H +
Sbjct: 289 TWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV 348
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTLIGGLAFHGFAEE 353
G + + NALIDM+ KCG + RA VF +D +W+++IGG A HG ++
Sbjct: 349 RKRNLGRSTHV-CNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 407
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
++ +F +M++ P +T + VL AC+H G V+EG+++F M +Y I P I HYG
Sbjct: 408 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 467
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
+H +VE +A L ++ +G
Sbjct: 468 DLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 527
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+Y +LSNIYA G+W+ + K R M + +K G S +E ++
Sbjct: 528 NYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNE 570
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 230/451 (50%), Gaps = 86/451 (19%)
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA--NCGDLNTASVLFDG 165
F F+ K C+ L N +H I++ GF+ N FV LI F A + GD+N A V+FD
Sbjct: 58 FMFLFKQCSTLKDLNQ---LHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDR 114
Query: 166 DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS--------------------- 204
D W+++ G+ R +L MA + M + + +
Sbjct: 115 IENADGFLWNTMIRGFGRNRKLLMAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLG 174
Query: 205 ------------------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
N +I Y + ++ A LF+E+PK D+V+WNA+I +V C
Sbjct: 175 KQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHVSC 234
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
GM +AL++F +M G PD+ T++ ++AC+ LG L+ G+ VH + G +
Sbjct: 235 GMYNEALDLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIAVF 294
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
N+LIDMYAKCG++E A E+F + +++ TW+T+I GLA HG AE+++ +F M +V
Sbjct: 295 -NSLIDMYAKCGAVEYAREMFNAVSGKNIVTWNTMIMGLATHGDAEDALTLFSNMLAERV 353
Query: 367 R-PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
P +TF+ VL AC++ GKVEEG++YF LM +NI+P ++HYG
Sbjct: 354 ETPDGVTFLAVLCACNYGGKVEEGRRYFDLMTKHFNIQPTLKHYGSMVDILGRAGFVEEA 413
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+HG+VELG + +L + D S DYVLL+N+YAS
Sbjct: 414 YQLIKSMPMECNAVIWRTLLAACQMHGNVELGERVSSHVLEIVADHSSDYVLLANMYASS 473
Query: 447 GEWNRVEKVRKLMDDSDIKK-QPGCSLIEAD 476
G+WN + K RK M ++K +PG S +E +
Sbjct: 474 GQWNEMIKTRKSMHRKGVEKPEPGNSYLEIN 504
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 185/383 (48%), Gaps = 41/383 (10%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L+K+C+ L+ L Q+ A + GF+ + + +LI +V G +NYA +F +I D
Sbjct: 61 LFKQCSTLKDLNQLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDRIENADG 120
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F++NT+IRG +++ L A Y +M + I + FTFSF+LK +L +G +H
Sbjct: 121 FLWNTMIRGFGRNRKLLMAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLGKQLHVN 180
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
I+K G + + +VRN+LI+ + D+N A LFD K D+VAW+++ + G + A
Sbjct: 181 ILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEA 240
Query: 191 RSLFDEMPV---------------------------------------RDLVSWNVMITG 211
LF +M + + +N +I
Sbjct: 241 LDLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIAVFNSLIDM 300
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVT 270
YAK G +E A E+FN V +++V+WN MI G G + AL +F M + E PD VT
Sbjct: 301 YAKCGAVEYAREMFNAVSGKNIVTWNTMIMGLATHGDAEDALTLFSNMLAERVETPDGVT 360
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
L++L AC G +E G++ + + + H +++D+ + G +E A ++ M
Sbjct: 361 FLAVLCACNYGGKVEEGRRYFDLMTKHFNIQPTLKHYGSMVDILGRAGFVEEAYQLIKSM 420
Query: 331 -RDRDVSTWSTLIGGLAFHGFAE 352
+ + W TL+ HG E
Sbjct: 421 PMECNAVIWRTLLAACQMHGNVE 443
>gi|293331391|ref|NP_001168246.1| uncharacterized protein LOC100382009 [Zea mays]
gi|223946981|gb|ACN27574.1| unknown [Zea mays]
gi|413932359|gb|AFW66910.1| hypothetical protein ZEAMMB73_426189 [Zea mays]
Length = 499
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 220/419 (52%), Gaps = 48/419 (11%)
Query: 103 PNKFTFSFVLKACTRLLYRNMGF------CVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156
P+ + SF L AC R++ + +H ++ G + +V N+ + + D+
Sbjct: 70 PDHISLSFSLHACARVVPTTSRYPLTVTGLLHSLALRLGHARDVYVANAAVSSYFAASDV 129
Query: 157 NTASVLFDGDAK--MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK 214
+A LF + DVV W+++ G+A G L AR FD M R++VSWN M++ YA+
Sbjct: 130 ASADRLFAEVSTDVADVVTWTTMVTGHASAGGLGRARHFFDAMSERNVVSWNAMLSAYAR 189
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM-RSVGERPDDVTMLS 273
G + +A +LF+ +P R+ +W+ MISG VL G +AL +F +M S G P++ ++S
Sbjct: 190 AGMLTEARDLFDAMPTRNAATWSCMISGLVLSGRCWEALGLFGDMVHSSGIVPNEPALVS 249
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
+++ACA + LE G VH G V+ +A+IDMY KCG I AI VF M R
Sbjct: 250 VVSACAQMRSLEHGAWVHAYAEQELQGAMSVVLASAIIDMYGKCGGIHSAIRVFAAMPMR 309
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
++ +W+ +I GLA +G +++++ +MQ + V+P +ITF+G+L AC+H+G V EG++ F
Sbjct: 310 NIYSWNAMITGLAMNGGERQALSLLWKMQMVGVQPNDITFIGLLSACTHSGLVNEGRRLF 369
Query: 394 KLMRDEYNIEPNIRHYGV---------------------------------------HGD 414
M +++ I+P +HYG+ HG
Sbjct: 370 DSMIEDFGIQPFPQHYGLMVDLIGRSGRVMEALYFVKSMPVEPHPGLWGALASACKMHGK 429
Query: 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
VELG K+L+ + Y+LLSN+Y S W+ + VRK++ + K G +++
Sbjct: 430 VELGEEVAKKLIELEPRHGSRYILLSNLYGSVNRWDDMASVRKILKRRKVPKGTGNAVV 488
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 164/527 (31%), Positives = 244/527 (46%), Gaps = 96/527 (18%)
Query: 62 FVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK--ACTRLL 119
+ +P + +R ++ NP A L + + + VLK A T
Sbjct: 13 YPPARQPSSKPTAAPLRSPGRASNPGTAPPLAASLLRHGAPHDAGALRAVLKRLAATASA 72
Query: 120 YRNMGFCVHGKIVKYG-FEFNRFVRNSLIYFHANCGDLNTASVLF---DGDAKMDVVAWS 175
+H K G + +R VR++L+ + CG AS LF G DVV+W+
Sbjct: 73 PCEAAPALHAHSAKLGLYRHHRGVRDALVALYLACGRRGVASDLFAGAGGGPAPDVVSWT 132
Query: 176 SLTAGYARRGELSMARSLFDEMPVR----------------------------------- 200
++ +AR G A LF M
Sbjct: 133 AMVTWHARLGLFREAAELFLAMADDGAVVVDAVAAAAAFAACAGAGELVLAREVHRRVLE 192
Query: 201 -----DLVSWNVMITGYAKQGEMEKANELFNE-VPKRDVVSWNAMISGYVLCGMNKQALE 254
D+V+ N ++ YAK G+ A F VP +++V+WN MIS + G ++ALE
Sbjct: 193 AGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEALE 252
Query: 255 MFEEMR-----SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
+F EM + PDD T +++L ACA LG L+ G+ VH ++ A + GNA
Sbjct: 253 LFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTGRDAAAGVVGNA 312
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
LIDMYAKCG++E+A EVF M RDV T++++I GLA HG EE++A+F +M++ +VRP
Sbjct: 313 LIDMYAKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPN 372
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
E+TF+GVL AC HAG +E+G ++F M + + + P I HYG
Sbjct: 373 EVTFLGVLSACCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCVVDMLGRAGRLDEAEELV 432
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
HG V+ +R+ +D++GDYVL+SN+YA G
Sbjct: 433 SVMPIRPDAIIWGSLLAACRAHGHVDRAERVMRRMAE-DEDDAGDYVLMSNMYAQEGRHG 491
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLD 497
+ +VR+ M + K PGCSLIE D + + F P NSG D
Sbjct: 492 KAVQVRRQMRRGKVDKVPGCSLIEIDG---VVHEFQAVPA-NSGEPD 534
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 27/230 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
GA+ A ++F +T D + Y ++I G A +A+ L+ M + ++PN+ TF VL
Sbjct: 321 GAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPNEVTFLGVL 380
Query: 113 KACTR-------LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD- 164
AC L + + +HG V G E V + L G L+ A L
Sbjct: 381 SACCHAGNIEDGLRHFDAMAELHG--VTPGIEHYGCVVDML----GRAGRLDEAEELVSV 434
Query: 165 GDAKMDVVAWSSLTA-----GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
+ D + W SL A G+ R E M R DE D V +M YA++G
Sbjct: 435 MPIRPDAIIWGSLLAACRAHGHVDRAERVMRRMAEDEDDAGDYV---LMSNMYAQEGRHG 491
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
KA ++ ++ + V + G L ++ E F+ + + PDDV
Sbjct: 492 KAVQVRRQMRRGKVDK----VPGCSLIEIDGVVHE-FQAVPANSGEPDDV 536
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/458 (32%), Positives = 232/458 (50%), Gaps = 48/458 (10%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I H +F K+ D +N ++ G +++N + QM + + PN +T S +L+A
Sbjct: 56 IGPVHDLFDKMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRA 115
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
+ VH G N FV +SLI +A + F+ + DV +W
Sbjct: 116 VISTELDVLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTSW 175
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
++L + Y G+ A++ FD+MP R+++SW ++ GY K ++ KA +F+++ +R+VV
Sbjct: 176 NALVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVV 235
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
SW AMISGYV AL++F M RP+ T S+L ACA L +G ++H +
Sbjct: 236 SWTAMISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCI 295
Query: 295 LDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+ SG+A V+ +L+DMYAKCG ++ A VF +RD+++ +W+ +IGG A HG A
Sbjct: 296 IK--SGIANDVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATR 353
Query: 354 SIAMFREMQRLKV--RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY-- 409
++ E R+KV P E+TFV VL AC HAG VEEG+K+F M +Y I+ + HY
Sbjct: 354 AL---EEFDRMKVVGTPDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSC 410
Query: 410 -------------------------------------GVHGDVELGRLANKRLLNMRKDE 432
G+H ++ELG A +R+ +
Sbjct: 411 MVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLESSH 470
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ-PG 469
Y +LS I +G W+ V ++R M + IKKQ PG
Sbjct: 471 PVSYSVLSKIQGEKGVWSSVNELRDTMKERGIKKQTPG 508
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 118/276 (42%), Gaps = 40/276 (14%)
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
++V+W+ + Y + ++ LFD+MP++D VSWN+M++G+ + E F ++
Sbjct: 39 NIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMG 98
Query: 230 KRDVVSWNAMISGYVLCGMNKQ-----------------------------ALEMFEEMR 260
+ VV + IS + ++ + A +E
Sbjct: 99 RAGVVPNDYTISTLLRAVISTELDVLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEE 158
Query: 261 SVGERPDDVTMLSLLTACADLGD-LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
++G +D++M + + A + +E+GK V ++ L++ Y K
Sbjct: 159 ALGRAFNDISMKDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQ 218
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
+ +A VF M +R+V +W+ +I G + +++ +F M + + RP TF VL A
Sbjct: 219 VNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDA 278
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV 415
C+ + + G + + P I G+ DV
Sbjct: 279 CAGSSSLIMGLQ----------LHPCIIKSGIANDV 304
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 160/538 (29%), Positives = 245/538 (45%), Gaps = 110/538 (20%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
+++TLK + + V F+ + S +L+ + + G A +F I E + YN +
Sbjct: 47 DIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAA--RGEPGLARNVFDVIPERNVIFYNVM 104
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
IR + DA+ ++ M P+ +T+ VLKAC+ +G +HG + K G
Sbjct: 105 IRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGL 164
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
+ N FV N LI + CG L A R + DE
Sbjct: 165 DLNLFVGNGLIALYGKCGCLPEA-------------------------------RCVLDE 193
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKA----------------------------------- 221
M +D+VSWN M+ GYA+ + + A
Sbjct: 194 MQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVL 253
Query: 222 --NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
E+F + K+ +VSWN MIS Y+ M ++++++ +M PD +T S+L AC
Sbjct: 254 YVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACG 313
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
DL L +G+++H ++ +L N+LIDMYA+CG +E A VF M+ RDV++W+
Sbjct: 314 DLSALLLGRRIH-EYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWT 372
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+LI G ++A+F EMQ P I FV +L ACSH+G + EGK YFK M D+
Sbjct: 373 SLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDD 432
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y I P I H+ V+ ++++G L
Sbjct: 433 YKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGIL 492
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
A +LL + +ESG YVLLSNIYA G W V +R LM I+K PG S +E +++
Sbjct: 493 AADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQ 550
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 159/519 (30%), Positives = 256/519 (49%), Gaps = 89/519 (17%)
Query: 4 NRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVI-----PGAI 55
+++ + K C + +L K++ A VT G +SD +Y G+ ++ G +
Sbjct: 73 DKYTYPAMLKACWRMGSLSKGKEVHAHVTKTGLDSD-------VYVGNALLHLYGSTGQV 125
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
A ++F + D +NT++ A + N ++ + L+ +M I + + V AC
Sbjct: 126 TDARRLFDGMPHRDLASWNTLL--GAYNDNAVEVLVLFKRMMYEGIGGDHISMVIVFSAC 183
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
++ G VHG ++K G + N+L+ + CG
Sbjct: 184 GKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCG--------------------- 222
Query: 176 SLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
E+ A+SLF EM +RD+VS ++ GY G ++ A +F+++ +D+V
Sbjct: 223 ----------EMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLV 272
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
SWN+MI YV K+A+E+F +M + PD+ TM+S+L ACA L DL+ G+ H +
Sbjct: 273 SWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAHRFI 332
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
+ + + G ALIDMYAKCGS+E A+ F M RDV TW+T I GLA HG +++
Sbjct: 333 IQ-NNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKA 391
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
+++F EM++ ++P + TFV VL+ACS +G V+EG FK M + Y I+P I H G
Sbjct: 392 LSLFTEMEKQGIKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLLD 451
Query: 411 -------VHGDVELGRL--------ANKRLLN--------------------MRKDESGD 435
+H E +L ANK LL+ +
Sbjct: 452 ILSRAGLLHQAEEFIKLMPPKEKIIANKTLLSACMNHLEYDLGEKIANGLTELSSQSHAT 511
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
++LLSN YA G+W V K R++M + DI+K PG S ++
Sbjct: 512 HILLSNFYALAGQWAEVAKTRRVMKEIDIRKVPGISSVD 550
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 147/471 (31%), Positives = 246/471 (52%), Gaps = 72/471 (15%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVL 112
++ +A +F ++ + D + T++ G A+ +A ++ +M ++PN+ T V+
Sbjct: 191 SLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVV 250
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A + MG G++V R+V DG V
Sbjct: 251 SAMGQ-----MGLLAFGRMVY------RYVA--------------------DGGVGRSVN 279
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
++L + + G + AR +FD M V+D+ SW M+ YAK G++E A LF+++P+R+
Sbjct: 280 LENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRN 339
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW+ MI+ Y ++A+ +F+ M G P + ++S+L+ACA LG L++G+ ++
Sbjct: 340 AVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYD 399
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ V V GNA ID+YAKCG + A ++F M +R+V +W+++I A HG +E
Sbjct: 400 NYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSE 459
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
E + +F +++ + P EITF+G+L ACSH+G V EG++YFK M+ Y IEP HY
Sbjct: 460 EVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACM 519
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
++G+VE+G A +L+ + +S
Sbjct: 520 IDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQLNPLDS 579
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYL 484
G YVL+S IYAS+ +W++V+ +R LM + +KK PGCS IE D K F ++L
Sbjct: 580 GIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEVDGK-FHEFL 629
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 187/411 (45%), Gaps = 76/411 (18%)
Query: 3 TNR-----HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINY 57
TNR H L + C + Q+ AL+T++G + L+ ++ P +++
Sbjct: 30 TNRNLVVTHPLLALLESCASFPRFLQLHALLTVSGLAAHRFPASRLLAFCALSTPPRVDH 89
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A + + + P+ +M T++R +++ P A L+ ++ + S+ + T F +KA
Sbjct: 90 AAAILARASAPNAYMLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAAS 149
Query: 118 LLYRNM---GFCVHGKIVKYGFEFNR-FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
+ G VH +K+G V N+L++F+AN
Sbjct: 150 EHEHHSPSGGEGVHCVALKWGHVAQSVLVGNALVHFYAN--------------------- 188
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233
L+ AR+LFDEMP RD+VSW ++ GYA++G ++A +F +
Sbjct: 189 ----------HRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRM----- 233
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
+++G G +P++VT++++++A +G L G+ V+
Sbjct: 234 -----VVAG--------------------GLQPNEVTLVAVVSAMGQMGLLAFGRMVYRY 268
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+ D G + L NALIDM+ K G A EVF M +DV +W+T++ A G E
Sbjct: 269 VADGGVGRSVNLE-NALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLES 327
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
+ +F +M R +++ ++ A S A + EE + FK M +E +EP
Sbjct: 328 AARLFDDMPRRNA----VSWSCMIAAYSQANQPEEAVRLFKAMIEE-GVEP 373
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 126/270 (46%), Gaps = 23/270 (8%)
Query: 36 DSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAV 90
DS A+++ +YS + ++ G + A ++F + + ++ +I +Q+ P +AV
Sbjct: 302 DSMAVKD-VYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAV 360
Query: 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE-FNRFVRNSLIYF 149
L+ M + ++P VL AC +L ++G ++ V G + N+ I
Sbjct: 361 RLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDV 420
Query: 150 HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSW 205
+A CGD + AS LF A+ +VV+W+S+ +A G+ LF+++ V D +++
Sbjct: 421 YAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITF 480
Query: 206 NVMITGYAKQGEMEKANELFNEV-------PKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
+++ + G + + F E+ PK + + MI L G E FE
Sbjct: 481 LGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSE--HYACMID---LLGKIGLLEEAFEV 535
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGK 288
+ + D+ +LL AC G++E+G+
Sbjct: 536 AKGMPMETDEAGWGALLNACRMYGNVEIGE 565
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 11/181 (6%)
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G+ VHC L VL GNAL+ YA S+ A +F M DRDV +W+TL+ G A
Sbjct: 159 GEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYA 218
Query: 347 FHGFAEESIAMF-REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD-----EY 400
G A+E+ +F R + ++P E+T V V+ A G + G+ ++ + D
Sbjct: 219 RRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSV 278
Query: 401 NIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
N+E + + G A + +M + + + N YA G+ +E +L D
Sbjct: 279 NLENAL--IDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGD---LESAARLFD 333
Query: 461 D 461
D
Sbjct: 334 D 334
>gi|147844170|emb|CAN80560.1| hypothetical protein VITISV_031385 [Vitis vinifera]
Length = 730
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/464 (30%), Positives = 234/464 (50%), Gaps = 44/464 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G +A ++F ++ E + ++ +I G Q+ P A+ LY+QM + PN++ F+ V+
Sbjct: 59 GHTTFARQVFDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVI 115
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L G +H + +K+G+E FV NSLI + C + A +F + + V
Sbjct: 116 SACASLSALTQGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCV 175
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVS---------------------------- 204
++++L G+ +L F M + L+
Sbjct: 176 SYNALITGFVENQQLERGFEFFKLMXQQGLIPDRFAFMGVLGICTTTENLKRGTELHCQT 235
Query: 205 -----------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
NV+IT Y++ +++A + F + ++DV+SWN +I+ C + + L
Sbjct: 236 VKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGL 295
Query: 254 EMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
+F+ M RPDD T S L ACA L + GK++H L+ TS + NAL++
Sbjct: 296 RVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMR-TSLYRDLGVDNALVN 354
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAKCG I A ++F M ++ +W+T+I G HG E ++ +F +M + +RP +T
Sbjct: 355 MYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNAIGIRPDSVT 414
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDE 432
F+G+L AC+HAG EE + F D + + +HGDV +G K LL ++
Sbjct: 415 FIGLLTACNHAGLAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLKLQPVT 474
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ YVLLSN+YAS G W+ V + RK + S +KK+PG SLIE +
Sbjct: 475 TSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVN 518
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 147/312 (47%), Gaps = 39/312 (12%)
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G +H ++K G + + F+ N ++ +A CG A +FD + ++V+WS++ +GY +
Sbjct: 29 GLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSAMISGYDQ 88
Query: 184 RGELSMARSLFDEMPV----------------------------RDL------VSW--NV 207
GE MA L+ +M + R L +S+ N
Sbjct: 89 AGEPQMAIDLYSQMFLVPNEYVFASVISACASLSALTQGQKIHSRSLKFGYESISFVSNS 148
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+I+ Y K + A +F P+ + VS+NA+I+G+V ++ E F+ M G PD
Sbjct: 149 LISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGFEFFKLMXQQGLIPD 208
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+ +L C +L+ G ++HC + + + GN +I MY++ I+ A + F
Sbjct: 209 RFAFMGVLGICTTTENLKRGTELHCQTVKLNLDSTPFI-GNVIITMYSELNLIQEAEKAF 267
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEITFVGVLVACSHAGKV 386
+ ++DV +W+TLI + + + +F+ M + VRP + TF L AC+ +
Sbjct: 268 RLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASM 327
Query: 387 EEGKK-YFKLMR 397
GK+ + LMR
Sbjct: 328 SHGKQIHAHLMR 339
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 4/210 (1%)
Query: 182 ARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
A R LS+ ++ D+ N ++ YAK G A ++F+E+ ++++VSW+AMIS
Sbjct: 25 ALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSAMIS 84
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
GY G + A++++ +M V P++ S+++ACA L L G+K+H L
Sbjct: 85 GYDQAGEPQMAIDLYSQMFLV---PNEYVFASVISACASLSALTQGQKIHSRSLKFGYES 141
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ N+LI MY KC A+ VF + + +++ LI G + E F+ M
Sbjct: 142 ISFV-SNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGFEFFKLM 200
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+ + P F+GVL C+ ++ G +
Sbjct: 201 XQQGLIPDRFAFMGVLGICTTTENLKRGTE 230
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/515 (28%), Positives = 254/515 (49%), Gaps = 80/515 (15%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
K +L LKQ+Q+ + ++G + +L+ ++ + ++YA +F + + P+T +Y
Sbjct: 33 KSRHLNHLKQVQSFLIVSGLSHSHFLCFKLLRFCTLRLCN-LSYARFIFDRFSFPNTHLY 91
Query: 74 NTIIRGSAQSQNPLDAV----FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
++ G + S PL A F + + +PN F + VLK+ L VH
Sbjct: 92 AAVLTGYSSSL-PLHASSAFSFFRLMVNRSFPRPNHFIYPLVLKSTPYLSSAFSTPLVHT 150
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ K GF V+ +L++ +A SS++ +++
Sbjct: 151 HLFKSGFHLYVVVQTALLHSYA-----------------------SSVS-------HITL 180
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
AR LFDEM R++VSW M++GYA+ G++ A LF E+P+RDV SWNA+++ G+
Sbjct: 181 ARQLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFEEMPERDVPSWNAILAACTQNGLF 240
Query: 250 KQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
+A+ +F M RP++VT++ +L+ACA G L++ K +H + V N
Sbjct: 241 VEAVSLFRRMINDPCIRPNEVTLVCVLSACAQTGTLQLAKGIHAFAYRRNLS-SDVFVSN 299
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK--- 365
+L+D+Y KCG++E A VF + ++ W+++I A HG +EE+IA+F +M +L
Sbjct: 300 SLVDLYGKCGNLEEASSVFKMSSKKSLTAWNSMINCFALHGRSEEAIAVFEDMMKLNSHD 359
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------- 411
++P ITF+G+L AC+H G V +G+ YF LM+ + IEP I HYG
Sbjct: 360 IKPDHITFIGLLNACTHGGLVSKGRGYFDLMKKRFGIEPRIEHYGCLIDLLGRAGQFDEA 419
Query: 412 -------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+G ++L +A K L+ + + G +++N+Y
Sbjct: 420 LETMSTMKMEADEAIWGSLLNACKKYGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEM 479
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFL 481
G W + RK++ + K PG S IE D+K L
Sbjct: 480 GNWEEARRARKMIKHQNAYKPPGWSQIEIDNKLLL 514
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 233/463 (50%), Gaps = 77/463 (16%)
Query: 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145
P DA+ ++ M + + FT+SF++KA + + VH +VK G + FV N+
Sbjct: 421 PRDALAAFSAMPR----RDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNA 475
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
LI ++ G + A +FD + DVV+W++ A R GEL+ R LFDEMP +D VSW
Sbjct: 476 LIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSW 535
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV--------------------- 244
N ++ GY K GE+E A ELF +P+R+VVSW+ M+SGY
Sbjct: 536 NTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLV 595
Query: 245 -------LC---GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
C G+ +A ++F +M+ D ++S+L ACA+ G L +GK++H +
Sbjct: 596 TWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV 655
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTLIGGLAFHGFAEE 353
G + + NALIDM+ KCG + RA VF +D +W+++IGG A HG ++
Sbjct: 656 RKRNLGRSTHV-CNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 714
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
++ +F +M++ P +T + VL AC+H G V+EG+++F M +Y I P I HYG
Sbjct: 715 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 774
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
+H +VE +A L ++ +G
Sbjct: 775 DLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 834
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+Y +LSNIYA G+W+ + K R M + +K G S +E ++
Sbjct: 835 NYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNE 877
>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
Length = 549
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 150/506 (29%), Positives = 240/506 (47%), Gaps = 91/506 (17%)
Query: 55 INYAHKMFVKIT-EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
+N+A +F T E + F +N II G + P + Y +M + P+KFTF +K
Sbjct: 8 MNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIK 67
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
AC +L +HG + K+G E + F+ ++L+ + G + A V F+ DVV
Sbjct: 68 ACLDVLEIKK---IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVL 124
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG---------------------- 211
W+++ GYA+ G+ M F M +V +TG
Sbjct: 125 WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAM 184
Query: 212 -----------------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
Y K +E A E+F + ++D+ SWN++ S + CG + L
Sbjct: 185 KMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLR 244
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-------VLHG 307
+ + M G +PD VT+ ++L AC+ L L G+++H ++ SG+ K VL
Sbjct: 245 LLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI--VSGLGKDGKDIDDVLLK 302
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
NA+IDMYAKCGS+ A VF M ++DV++W+ +I G HG+ E++ MF M ++++
Sbjct: 303 NAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLK 362
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------- 410
P E+TFVGVL ACSHAG V +G+ + M+ +Y++ P I HY
Sbjct: 363 PDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYE 422
Query: 411 ----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+H L +A +R+ + + G YVL+SN+Y + G
Sbjct: 423 LALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGR 482
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ V +VR M +++K PGCS IE
Sbjct: 483 YEEVLEVRHTMRQQNVRKTPGCSWIE 508
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 164/390 (42%), Gaps = 58/390 (14%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITE 67
K C ++ +K+I L+ G D ++ GS ++ G + +A F ++
Sbjct: 67 KACLDVLEIKKIHGLLFKFGLELD-------VFIGSALVNCYLKFGLMEHAQVAFEELPI 119
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
D ++N ++ G AQ + + +M S+ P++FT + +L + N G +
Sbjct: 120 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRII 179
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG +K G++ V NSLI + C + A +F+ + D+ +W+S+ + + + G+
Sbjct: 180 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDH 239
Query: 188 SMARSLFDEM---------------------------------------------PVRDL 202
L D M + D+
Sbjct: 240 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 299
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
+ N +I YAK G M A+ +F + +DV SWN MI GY + G +ALEMF M V
Sbjct: 300 LLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 359
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
+PD+VT + +L+AC+ G + G+ + + H +IDM + G ++
Sbjct: 360 QLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDE 419
Query: 323 AIEVFLGMR-DRDVSTWSTLIGGLAFHGFA 351
A E+ L M + + W L+ H A
Sbjct: 420 AYELALTMPIEANPVVWRALLAACRLHKHA 449
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 5/180 (2%)
Query: 212 YAKQGEMEKANELFNEVPKR-DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
Y+K +M A +F++ +V ++NA+ISG++ G ++ E +++MR+ G PD T
Sbjct: 2 YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFT 61
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
+ AC D+ LE+ KK+H L + V G+AL++ Y K G +E A F +
Sbjct: 62 FPCAIKACLDV--LEI-KKIHGLLFKFGLEL-DVFIGSALVNCYLKFGLMEHAQVAFEEL 117
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
RDV W+ ++ G A G E + FR M V P+ T G+L + G + G+
Sbjct: 118 PIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGR 177
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/419 (32%), Positives = 219/419 (52%), Gaps = 73/419 (17%)
Query: 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
M++ + P++ + VL C G +H + V ++LI +C
Sbjct: 1 MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYM---------LVSDTLIDAQVSCAL 51
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQ 215
+N YA ++ MA L++ + +++V M+ GYAK
Sbjct: 52 MNM----------------------YASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKN 89
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
G++E A+ +FN +P +DVVSW+AMI+GY +AL +F +M+ G +PD++TMLS++
Sbjct: 90 GKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVI 149
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRD 334
+ACA++G LE + +H + + + + K+L GNALIDM++KCGS+ A++VF M ++
Sbjct: 150 SACANVGALEKARCIHSFVENHS--MCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKN 207
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK 394
V TW+++I A HG ++ +F M+ ++P +TF+G+L AC HAG VEEG+ FK
Sbjct: 208 VVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFK 267
Query: 395 LMRDEYNIEPNIRHYG---------------------------------------VHGDV 415
+M +Y IEP HYG +HGD+
Sbjct: 268 IMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDL 327
Query: 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
ELG A K++L + + G VLLSNIYA G WN V++VR +M+ K+ GCS +E
Sbjct: 328 ELGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVKEVRGVMEVQGTWKKKGCSWME 386
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 152/333 (45%), Gaps = 33/333 (9%)
Query: 41 RELIYSGSVVIP----GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM 96
+E++ S ++V G + AH +F + D ++ +I G A+S P++A+ L+ M
Sbjct: 74 KEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDM 133
Query: 97 EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156
++ +KP++ T V+ AC + C+H + + + N+LI + CG L
Sbjct: 134 QRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSL 193
Query: 157 NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG--YA- 213
A +F+ + +VV W+S+ A G+ A +LF+ M + V G YA
Sbjct: 194 TLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYAC 253
Query: 214 -KQGEMEKANELFNEVPKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
G +E+ LF + ++ + + M+ L G K + + ++S+ RP+
Sbjct: 254 CHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVD---LLGRAKLLGQAADLIQSMHLRPN 310
Query: 268 DVTMLSLLTACADLGDLEVG----KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
V SLL AC GDLE+G KK+ LD G A+VL L ++YA+ G+
Sbjct: 311 VVIWGSLLAACRMHGDLELGTFAAKKI--LELDPNHGGAQVL----LSNIYAEYGNWNDV 364
Query: 324 IEV-----FLGMRDRDVSTWSTLIGGLAFHGFA 351
EV G + +W L G + H FA
Sbjct: 365 KEVRGVMEVQGTWKKKGCSWMELNG--SVHQFA 395
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 166/509 (32%), Positives = 257/509 (50%), Gaps = 85/509 (16%)
Query: 15 CTNLRTLK---QIQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
C L L QI L+ + ++ D SAL ++ YS V+ A + F +
Sbjct: 161 CAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDM-YSKCRVVASA----QRAFDDMDVR 215
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ +N++I Q+ A+ ++ +M C I+P++ T + V AC L G +H
Sbjct: 216 NIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIH 275
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+++K+ +++ RN L+ G+A +D+ YA+ ++
Sbjct: 276 ARVMKH----DKY-RNDLVL----------------GNALVDM---------YAKCRRVN 305
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
AR +FD MP+RD+VS M++GYAK ++ A +F+ + +R+VVSWNA+I+GY G
Sbjct: 306 EARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGE 365
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD----MTSGV-AK 303
N++A+ +F ++ P T +LL ACA+L DL++G++ H +L SG +
Sbjct: 366 NEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSD 425
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
+ GN+LIDMY KCG +E VF M +RD +W+ +I G A +G+ E++ +FREM
Sbjct: 426 IFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLV 485
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
RP +T +GVL ACSHAG VEEG+ YF+ M E+ + P HY
Sbjct: 486 SGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLD 545
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
VHG++ LG+ +RLL + SG YVLLSN+YA
Sbjct: 546 EANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYA 605
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
G W V +VRK M + KQPGCS I
Sbjct: 606 ELGRWKDVVRVRKQMRQMGVIKQPGCSWI 634
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 131/282 (46%), Gaps = 32/282 (11%)
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
F+ +L C + VH +I+K F F++N L+ + CG L A
Sbjct: 22 FAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDA-------- 73
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
R +FD M R+ SWN ++ K G +++A LF
Sbjct: 74 -----------------------RKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKC 110
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P+RD SWNAM+SG+ ++AL +M S ++ + S L+ACA L DL +G
Sbjct: 111 MPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIG 170
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
++H L+ + V G+AL+DMY+KC + A F M R++ +W++LI
Sbjct: 171 VQIH-GLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQ 229
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+G A +++ +F M + P EIT V AC+ + EG
Sbjct: 230 NGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREG 271
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D LL C + + VH ++ T +++ N L+D+Y KCG +E A +V
Sbjct: 18 DSSPFAKLLDTCVKSKSVFEARLVHARIIK-TQFSSEIFIQNRLVDVYGKCGFLEDARKV 76
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
F M+ R+ +W+ ++G L G +E++ +F+ M
Sbjct: 77 FDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCM 111
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 155/547 (28%), Positives = 270/547 (49%), Gaps = 94/547 (17%)
Query: 20 TLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
T+ +I AL+ + G ++ +LI S + + G I A ++F K + +N +I
Sbjct: 22 TIAKIHALMILTGIFGHGNSNAKLIQSYARL--GHIESARQVFDKSPQCGVDAWNAMIIA 79
Query: 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN 139
++ +A+ LY +M ++P+ T++ VLKACTR L G + V G+ +
Sbjct: 80 YSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDD 139
Query: 140 RFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP- 198
FV +++ +A CG ++ A +FD + D+V W+++ G A+ G+ A ++ +M
Sbjct: 140 VFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHK 199
Query: 199 --------------------------------------VRDLVSWNVMITGYAKQGEMEK 220
+ D++ ++ YAK G +E
Sbjct: 200 KRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLEL 259
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A+ +F + ++V+SW+A+ISG+ G AL++ +M+S G +PD V+++S+L AC+
Sbjct: 260 ASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQ 319
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLH-----GNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+G L++GK VH + + LH A+IDMY+KCGS+ A VF + RD
Sbjct: 320 VGFLKLGKSVH-------GYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDS 372
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
+W+ +I HG EE++++F +M+ V+P TF +L A SH+G VE+G+ +F +
Sbjct: 373 ISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSI 432
Query: 396 MRDEYNIEPNIRHYGV---------------------------------------HGDVE 416
M +EY I+P+ +HY HG
Sbjct: 433 MVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFL 492
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+G +A K++L + D+ G Y L+SN +A+ W+ V +VRK+M + +KK PG S++E +
Sbjct: 493 IGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVN 552
Query: 477 DK--AFL 481
K AFL
Sbjct: 553 GKLHAFL 559
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 176/384 (45%), Gaps = 54/384 (14%)
Query: 13 KKCT---NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVK 64
K CT +LR+ ++ G+ D ++ G+ V+ G ++ A ++F K
Sbjct: 113 KACTRSLDLRSGEETWRQAVDQGYGDD-------VFVGAAVLNLYAKCGKMDEAMRVFDK 165
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+ D + T+I G AQ+ +AV +Y QM K ++ + +++ACT L + MG
Sbjct: 166 MGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMG 225
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+HG +++ + V+ SL+ +A G L AS +F +V++WS+L +G+A+
Sbjct: 226 LSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQN 285
Query: 185 GELSMARSLFDEMP----------------------------------VR----DLVSWN 206
G A L +M VR D VS
Sbjct: 286 GFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSST 345
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
+I Y+K G + A +F+++ RD +SWNA+I+ Y + G ++AL +F +MR +P
Sbjct: 346 AVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKP 405
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D T SLL+A + G +E G+ +++ H ++D+ ++ G +E A E+
Sbjct: 406 DHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQEL 465
Query: 327 FLGM-RDRDVSTWSTLIGGLAFHG 349
M + ++ W L+ G HG
Sbjct: 466 IESMITEPGIAIWVALLSGCLNHG 489
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 151/521 (28%), Positives = 253/521 (48%), Gaps = 82/521 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I+ A+K+F +++E D +N ++ G ++ +AV L+ +M + + T S VL
Sbjct: 117 GRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVL 176
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C L + + +H VK+G + FV N+LI + G L A +F G D+V
Sbjct: 177 PMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLV 236
Query: 173 AWSSLTAGYARRGELSMARSLFDEM----------------------------------- 197
W+S+ +G +RG+ + A +F M
Sbjct: 237 TWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYV 296
Query: 198 -----PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
V D+++ N ++ YAK +E A +F+ +P +D VSWN +I+GY+ G+ +A
Sbjct: 297 MRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEA 356
Query: 253 LEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
+E + M + G + T +S+L A + LG L+ G ++H + + V V G LI
Sbjct: 357 VERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNV-DVYVGTCLI 415
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
D+YAKCG + A+ +F M R W+ +I GL HG E++ +F MQ+ ++P +
Sbjct: 416 DLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHV 475
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TFV +L ACSHAG V++G+ +F +M+ Y+I P +HY
Sbjct: 476 TFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQN 535
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+HG+VE+G++A++ L + + G YVL+SN+YA G+W+ V
Sbjct: 536 MPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGV 595
Query: 453 EKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFN-LKPKPN 492
++VR L+ +++K PG S IE + Y N +P P
Sbjct: 596 DEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQ 636
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 4/198 (2%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
++ Y + G + +A ++F+E+ +RDV +WNAM+SG +A+ +F M G D
Sbjct: 109 LVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGD 168
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEV 326
VT+ S+L C LGD + +H + + G+ K L NALID+Y K G +E A V
Sbjct: 169 TVTVSSVLPMCVLLGDQVLALVMH--VYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCV 226
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F GM RD+ TW+++I G G ++ MF+ M+ V P +T V + A + G
Sbjct: 227 FHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDG 286
Query: 387 EEGKK-YFKLMRDEYNIE 403
K + +MR ++++
Sbjct: 287 RSAKSLHCYVMRRGWDVD 304
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 150/366 (40%), Gaps = 78/366 (21%)
Query: 104 NKFTFSFVLKACTRL---LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
N +F A RL L R++ C + GF F +R + +A+ L+ A
Sbjct: 37 NTLIAAFSRAALPRLAFPLLRHILSCAY-PFRPDGFTFPSLIRAA--PSNASAAQLH-AC 92
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK 220
L G + V SL Y R G +S A +FDEM RD+ +WN M++G + +
Sbjct: 93 ALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAE 152
Query: 221 ANELFNEVPKRDVVSWNAMISGYV-LC-------------------GMNKQ--------- 251
A LF + V +S + +C G++K+
Sbjct: 153 AVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALID 212
Query: 252 ---ALEMFEEMRSV---GERPDDVTMLSLLTAC--------------------------- 278
L M EE + V E D VT S+++ C
Sbjct: 213 VYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLT 272
Query: 279 --------ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
A GD K +HC ++ V ++ GNA++DMYAK +IE A +F M
Sbjct: 273 LVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSM 332
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHAGKVEEG 389
+D +W+TLI G +G A E++ + MQ+ + ++ + TFV VL A SH G +++G
Sbjct: 333 PVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQG 392
Query: 390 KKYFKL 395
+ L
Sbjct: 393 MRMHAL 398
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 154/501 (30%), Positives = 239/501 (47%), Gaps = 81/501 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++ A ++F + D + T+ A+S +++ Y M + ++P++ T+ VL
Sbjct: 194 GSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVL 253
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L G +H +IV+ + V +L + CG + A +F+ DV+
Sbjct: 254 SACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVI 313
Query: 173 AWSSLTAGYARRGELSMARSLFDEM---------------------P------------- 198
AW+++ G G+L A +F M P
Sbjct: 314 AWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARA 373
Query: 199 -----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
V D+ N +I Y+K G M+ A ++F+ +PKRDVVSW A++ GY CG ++
Sbjct: 374 VKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESF 433
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALID 312
F++M G + +T + +L AC++ L+ GK++H ++ +G+ A + NAL+
Sbjct: 434 STFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVK--AGIFADLAVANALMS 491
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY KCGS+E AI V GM RDV TW+TLIGGLA +G E++ F M+ ++RP T
Sbjct: 492 MYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATT 551
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------- 410
FV V+ AC VEEG++ F MR +Y I P +HY
Sbjct: 552 FVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTM 611
Query: 411 -----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
HG+VE+G A ++ L + +G YV LS IYA+ G W V
Sbjct: 612 PFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVA 671
Query: 454 KVRKLMDDSDIKKQPGCSLIE 474
K+RKLM + +KK+PG S IE
Sbjct: 672 KLRKLMKERGVKKEPGRSWIE 692
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 189/378 (50%), Gaps = 40/378 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++N A ++F K + +N +I G A +A L+T M++ ++P+KFTF +L
Sbjct: 93 GSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSIL 152
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC+ N G VH ++++ G N V N+LI +A CG + A +FD A D V
Sbjct: 153 SACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEV 212
Query: 173 AWSSLTAGYARRGELSMARSLFDEM------PVR-------------------------- 200
+W++LT YA G + + M P R
Sbjct: 213 SWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQI 272
Query: 201 -------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
D+ + Y K G ++ A E+F +P RDV++WN MI G V G ++A
Sbjct: 273 VESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAH 332
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
MF M PD VT L++L+ACA G L GK++H + V+ V GNALI+M
Sbjct: 333 GMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVK-DGLVSDVRFGNALINM 391
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
Y+K GS++ A +VF M RDV +W+ L+GG A G ES + F++M + V +IT+
Sbjct: 392 YSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITY 451
Query: 374 VGVLVACSHAGKVEEGKK 391
+ VL ACS+ ++ GK+
Sbjct: 452 MCVLKACSNPVALKWGKE 469
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 164/327 (50%), Gaps = 40/327 (12%)
Query: 104 NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF 163
+ + + +L++C + +G VH I+++G + N ++ N+L+ + +CG +N A LF
Sbjct: 43 DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102
Query: 164 DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL-------------------VS 204
D + VV+W+ + +GYA RG A +LF M L ++
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162
Query: 205 W--------------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
W N +I+ YAK G + A +F+ + RD VSW + Y
Sbjct: 163 WGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 222
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G +++L+ + M G RP +T +++L+AC L LE GK++H +++ + + V
Sbjct: 223 ESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVE-SEHHSDV 281
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
AL MY KCG+++ A EVF + +RDV W+T+IGGL G EE+ MF M +
Sbjct: 282 RVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKE 341
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKK 391
V P +T++ +L AC+ G + GK+
Sbjct: 342 CVAPDRVTYLAILSACARPGGLACGKE 368
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 117/198 (59%), Gaps = 4/198 (2%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N ++ Y G + +A LF++ + VVSWN MISGY G+ ++A +F M+ G
Sbjct: 83 NTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLE 142
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIERAI 324
PD T +S+L+AC+ L G++VH + M +G+A GNALI MYAKCGS+ A
Sbjct: 143 PDKFTFVSILSACSSPAALNWGREVHVRV--MEAGLANNATVGNALISMYAKCGSVRDAR 200
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
VF M RD +W+TL G A G+A+ES+ + M + VRP+ IT++ VL AC
Sbjct: 201 RVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLA 260
Query: 385 KVEEGKK-YFKLMRDEYN 401
+E+GK+ + +++ E++
Sbjct: 261 ALEKGKQIHAQIVESEHH 278
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 120/449 (26%), Positives = 197/449 (43%), Gaps = 55/449 (12%)
Query: 15 CTNLRTL---KQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
C +L L KQI A + + +SD S+AL ++ + GA+ A ++F +
Sbjct: 256 CGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMY-----IKCGAVKDAREVFECLPNR 310
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D +NT+I G S +A ++ +M K + P++ T+ +L AC R G +H
Sbjct: 311 DVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIH 370
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+ VK G + N+LI ++ G + A +FD K DVV+W++L GYA G++
Sbjct: 371 ARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVV 430
Query: 189 MARSLFDEM---------------------PVR------------------DLVSWNVMI 209
+ S F +M PV DL N ++
Sbjct: 431 ESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALM 490
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
+ Y K G +E A + + RDVV+WN +I G G +AL+ FE M+S RP+
Sbjct: 491 SMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNAT 550
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
T +++++AC +E G++ ++ V H ++D+ A+ G + A +V L
Sbjct: 551 TFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILT 610
Query: 330 MRDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI-TFVGVLVACSHAGKVE 387
M + + W L+ HG E I Q LK+ P T+V + + AG
Sbjct: 611 MPFKPSAAMWGALLAACRAHGNVE--IGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWR 668
Query: 388 EGKKYFKLMRDE-YNIEPNIRHYGVHGDV 415
+ K KLM++ EP V G+V
Sbjct: 669 DVAKLRKLMKERGVKKEPGRSWIEVAGEV 697
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL--DMTSGVAKVLHGNALI 311
++ + + G + D + LL +C DL VGK+VH +L M V + N L+
Sbjct: 30 DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYII---NTLL 86
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
+Y CGS+ A +F ++ V +W+ +I G A G +E+ +F MQ+ + P +
Sbjct: 87 KLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKF 146
Query: 372 TFVGVLVACSHAGKVEEGKK 391
TFV +L ACS + G++
Sbjct: 147 TFVSILSACSSPAALNWGRE 166
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 13 KKCTN---LRTLKQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMFVKIT 66
K C+N L+ K+I A V G +D ++AL + + G++ A ++ ++
Sbjct: 456 KACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKC-----GSVEDAIRVSEGMS 510
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
D +NT+I G AQ+ L+A+ + M+ ++PN TF V+ AC
Sbjct: 511 TRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSAC 559
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 168/552 (30%), Positives = 268/552 (48%), Gaps = 90/552 (16%)
Query: 11 LWKKC---TNLRTLKQIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVKI 65
L K C LR K+I L+ +GF+ D A+ L +Y+ +N A K+F ++
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKC----RQVNEARKVFDRM 196
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
E D +NTI+ G +Q+ A+ + M + ++KP+ T VL A + L ++G
Sbjct: 197 PERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGK 256
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG ++ GF+ + +L+ +A CG L TA LFDG + +VV+W+S+ Y +
Sbjct: 257 EIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNE 316
Query: 186 ELSMARSLFDEM------PV---------------------------------RDLVSWN 206
A +F +M P R++ N
Sbjct: 317 NPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVN 376
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
+I+ Y K E++ A +F ++ R +VSWNAMI G+ G AL F +MRS +P
Sbjct: 377 SLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKP 436
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIE 325
D T +S++TA A+L K +H + M S + K V AL+DMYAKCG+I A
Sbjct: 437 DTFTYVSVITAIAELSITHHAKWIHGVV--MRSCLDKNVFVTTALVDMYAKCGAIMIARL 494
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+F M +R V+TW+ +I G HGF + ++ +F EMQ+ ++P +TF+ V+ ACSH+G
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGL 554
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYG----------------------------------- 410
VE G K F +M++ Y+IE ++ HYG
Sbjct: 555 VEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAML 614
Query: 411 ----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
+H +V A +RL + D+ G +VLL+NIY + W +V +VR M ++K
Sbjct: 615 GACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRK 674
Query: 467 QPGCSLIEADDK 478
PGCS++E ++
Sbjct: 675 TPGCSMVEIKNE 686
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 215/426 (50%), Gaps = 46/426 (10%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H ++ L ++C++L+ L+QI LV NG + +L+ G+++ A ++F I
Sbjct: 38 HPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLV--SLFCRYGSVDEAARVFEPI 95
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+Y+T+++G A+ + A+ + +M ++P + F+++LK C +G
Sbjct: 96 DSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGK 155
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG +VK GF + F L +A C +N A +FD + D+V+W+++ AGY++ G
Sbjct: 156 EIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNG 215
Query: 186 ----ELSMARSLFDE------------MPVRD---LVSWNVMITG--------------- 211
L M +S+ +E +P L+S I G
Sbjct: 216 MARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIST 275
Query: 212 -----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
YAK G +E A +LF+ + +R+VVSWN+MI YV K+A+ +F++M G +P
Sbjct: 276 ALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKP 335
Query: 267 DDVTMLSLLTACADLGDLEVGKKVH--CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
DV+++ L ACADLGDLE G+ +H L + V+ V N+LI MY KC ++ A
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVV---NSLISMYCKCKEVDTAA 392
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
+F ++ R + +W+ +I G A +G +++ F +M+ V+P T+V V+ A +
Sbjct: 393 SMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELS 452
Query: 385 KVEEGK 390
K
Sbjct: 453 ITHHAK 458
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 233/466 (50%), Gaps = 70/466 (15%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
G +V G ++ A ++ V+ E + + ++I G +++ P DAV+ + M ++P++
Sbjct: 177 GGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEV 236
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
L AC++L G +H + K + + +LI +A CGD+ A +FD
Sbjct: 237 AVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDA- 295
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
G ++ E WNV+I GY K G ++ A LF+
Sbjct: 296 ------------VGRGQKPE-----------------PWNVIIDGYCKLGHVDIARSLFD 326
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
++ RDV+++N+MI+GY+ G + AL++F ++R G R D+ T++SLLTACA LG L
Sbjct: 327 QMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQ 386
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G+ +H ++ + V AL+DMY KCG ++ A VF M +RDV TWS +I GLA
Sbjct: 387 GRALHASI-EQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLA 445
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
F+G +++ F +M+R +PT +T++ VL ACSH+ + EG+++F MR + + P I
Sbjct: 446 FNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQI 505
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HYG VH +++L R A + LL
Sbjct: 506 EHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLK 565
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ +E YV L NIY +W +++R LM++ +KK G S I
Sbjct: 566 LAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSI 611
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 181/416 (43%), Gaps = 70/416 (16%)
Query: 12 WKKCTNLRTLKQIQALVTINGFNSDSSALRELIYS--GSVVIPGAINYAHKMFVKITEPD 69
W ++R Q+ A++T +G + + L+ S + P + Y +F ++ P
Sbjct: 6 WPTPRSVRQASQLHAILTTSGRIAHRPSAEHLLNSLTNCLSAPRHLRYVLSLFDRLPHPT 65
Query: 70 TFMYNTIIRGSAQSQNPLD-AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC-- 126
TF+++T +R Q+ D V + +M + ++ + FTF FV + C G C
Sbjct: 66 TFLHDTALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFRCCAA--GAGAGLCRM 123
Query: 127 VHGKIVKYGF-EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H ++ R V N LI+ +A+ G + A FD D V W+++ G R G
Sbjct: 124 LHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWG 183
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
L AR L + P R++VSW +I GY++ G P V +N M+S
Sbjct: 184 LLDEARRLLVQAPERNVVSWTSLIAGYSRAGR-----------PADAVYCFNCMLSD--- 229
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH-------------- 291
G PD+V ++ L+AC+ L +LE G+ +H
Sbjct: 230 -----------------GVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKL 272
Query: 292 -CTLLDMTSGVAKVLHG----------------NALIDMYAKCGSIERAIEVFLGMRDRD 334
TL+DM + + N +ID Y K G ++ A +F M RD
Sbjct: 273 VVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARD 332
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
V T++++I G G +++ +F +++R +R T V +L AC+ G + +G+
Sbjct: 333 VITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGR 388
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 158/460 (34%), Positives = 237/460 (51%), Gaps = 104/460 (22%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
++YA ++F KI PD F++NT+IRG +++ +P K F F
Sbjct: 1 MDYALRVFGKIENPDGFLWNTMIRGLGRTR-----------------QPEK-AFEF---- 38
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
Y+ M V G+++ F ++ V+ CG L S L +V
Sbjct: 39 -----YKRMQ--VKGEVLD-NFTYSFLVKV--------CGQL--GSDLLGKQIHCNV--- 77
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+ L + + VR N ++ Y ++E A LF E+PK +V
Sbjct: 78 --------------LKHGLEEHVFVR-----NTLVHMYGMFKDIEAATHLFEEMPKSYLV 118
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
+WN +I V CG K+A+E+F M G +PDD T + L+ACA LG+L++G++VH +
Sbjct: 119 AWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVH-SC 177
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
+D T V N+LIDMYAKCG +E A E+F M+ R++ +W+T+I GLA HG +E+
Sbjct: 178 IDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEA 237
Query: 355 IAMFREMQRLKV-RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
+ +F +M K+ P E+TF+GVL ACSH G VEEG++YF +MR +YNI+P I+HYG
Sbjct: 238 LELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMV 297
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
VHG++EL ++LL + D S
Sbjct: 298 DILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQQLLELEPDHSS 357
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK-QPGCSLI 473
DYVLL+N+YAS G+WN+V +VRK M ++K +PG S I
Sbjct: 358 DYVLLANMYASAGQWNKVVRVRKSMHIRGVQKPKPGNSYI 397
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 154/540 (28%), Positives = 254/540 (47%), Gaps = 84/540 (15%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+R K++ V GF S ++ + LI + G + A +F ++++ D +N++I
Sbjct: 174 VRECKRVHGYVLKLGFGSYNAVVNSLI--AAYFKCGEVESARILFDELSDRDVVSWNSMI 231
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
G + + + + QM + + T VL AC + +G +H VK GF
Sbjct: 232 SGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFS 291
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
N+L+ ++ CG+LN A+ +F + +V+W+S+ A + R G A LFDEM
Sbjct: 292 GGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEM 351
Query: 198 PVR---------------------------------------DLVSWNVMITGYAKQGEM 218
+ +L N ++ YAK G M
Sbjct: 352 QSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSM 411
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
E+AN +F+++P +++VSWN MI GY + +AL++F +M+ +PDDVTM +L AC
Sbjct: 412 EEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQK-QLKPDDVTMACVLPAC 470
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
A L LE G+++H +L G LH AL+DMY KCG + A ++F + +D+
Sbjct: 471 AGLAALEKGREIHGHIL--RKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMIL 528
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+ +I G HGF +E+I+ F +M+ + P E +F +L AC+H+G ++EG K F M+
Sbjct: 529 WTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMK 588
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
E NIEP + HY +H DVEL
Sbjct: 589 SECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELA 648
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ + + + + YVLL+N+YA +W V+K+++ + +K GCS IE K
Sbjct: 649 EKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGK 708
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/439 (27%), Positives = 225/439 (51%), Gaps = 67/439 (15%)
Query: 15 CTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
C L++L K++ ++++ NG D +L++ V G + ++F I F
Sbjct: 67 CAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFM--YVNCGDLVKGRRIFDGILNDKIF 124
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA---------CTRLLYRN 122
++N ++ A+ N ++V L+ +M++ I+ + +TF+ VLK C R
Sbjct: 125 LWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKR----- 179
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG-- 180
VHG ++K GF V NSLI + CG++ +A +LFD + DVV+W+S+ +G
Sbjct: 180 ----VHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCT 235
Query: 181 ---------------------------------YARRGELSMARSLFDEMPVRDLVSWNV 207
A G L++ R+L V+ S V
Sbjct: 236 MNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRAL-HAYGVKAGFSGGV 294
Query: 208 MITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
M Y+K G + ANE+F ++ + +VSW ++I+ +V G++ +A+ +F+EM+S
Sbjct: 295 MFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSK 354
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G RPD + S++ ACA L+ G++VH + G + + NAL++MYAKCGS+E
Sbjct: 355 GLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMG-SNLPVSNALMNMYAKCGSMEE 413
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A +F + +++ +W+T+IGG + + E++ +F +MQ+ +++P ++T VL AC+
Sbjct: 414 ANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQK-QLKPDDVTMACVLPACAG 472
Query: 383 AGKVEEGKK-YFKLMRDEY 400
+E+G++ + ++R Y
Sbjct: 473 LAALEKGREIHGHILRKGY 491
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 171/344 (49%), Gaps = 44/344 (12%)
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147
+A+ L ++ ++ ++ N T+ VL+ C L G VH I G + + L+
Sbjct: 42 NAMKLLSRSQRSELELN--TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLV 99
Query: 148 YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP--------- 198
+ + NCGDL +FDG + W+ L + YA+ G + LF++M
Sbjct: 100 FMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSY 159
Query: 199 --------------VRDL----------------VSWNVMITGYAKQGEMEKANELFNEV 228
VR+ N +I Y K GE+E A LF+E+
Sbjct: 160 TFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDEL 219
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
RDVVSWN+MISG + G ++ LE F +M ++G D T++++L ACA++G+L +G+
Sbjct: 220 SDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGR 279
Query: 289 KVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
+H + +G + V+ N L+DMY+KCG++ A EVF+ M + + +W+++I
Sbjct: 280 ALHA--YGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVR 337
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
G E+I +F EMQ +RP V+ AC+ + +++G++
Sbjct: 338 EGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGRE 381
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 163/543 (30%), Positives = 251/543 (46%), Gaps = 88/543 (16%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
+QI ALV + F L+ YS + G + A K F+ E D +NT+I
Sbjct: 914 EQIHALVIKSSFAPVVPVSNSLMNMYSKA----GVVYAAEKTFINSPELDLISWNTMISS 969
Query: 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT---RLLYRNMGFCVHGKIVKYGF 136
AQ+ ++A+ + + + +KP++FT + VL+AC+ Y +G VH +K G
Sbjct: 970 YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR---SL 193
+ FV +LI ++ G ++ A L G D+ +W+++ GY + + A SL
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089
Query: 194 FDEMPV------------------------------------RDLVSWNVMITGYAKQGE 217
EM + DL + ++ Y K G+
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD 1149
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
M A ELF E+ + D V+W MISGY+ G AL ++ MR G +PD+ T +L+ A
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
+ L LE GK++H ++ + + + G +L+DMY KCGS++ A VF M R V
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFV-GTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+ ++ GLA HG +E++ +FR MQ ++P ++TF+GVL ACSH+G E KYF M
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMF 1328
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
Y I P I HY GD E
Sbjct: 1329 KTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETA 1388
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ +LL + +S YVLLSNIYA+ +W+ V R +M ++KK PG S I+ +K
Sbjct: 1389 KRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNK 1448
Query: 479 AFL 481
L
Sbjct: 1449 VHL 1451
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 170/363 (46%), Gaps = 26/363 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQ-----SQNPLDAVFLYTQMEKCSIKPNKFT 107
G++ A ++F K ++ D +N+I+ AQ +N L+ L+ + + + T
Sbjct: 660 GSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLT 719
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
+ +LK C + + VHG VK GFE + FV +L+ + G + A +LFD
Sbjct: 720 LAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP 779
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGY--------AKQ 215
+ D V W+ + Y A F D + + +I G +
Sbjct: 780 ERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRH 839
Query: 216 GEMEKAN--ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
E KA ++F ++ +WN ++ ++ G A++ F+ + D VT++
Sbjct: 840 AEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVI 899
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRD 332
+L+A DL++G+++H L + S A V+ N+L++MY+K G + A + F+ +
Sbjct: 900 ILSAAVGADDLDLGEQIHA--LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPE 957
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
D+ +W+T+I A + E+I FR++ R ++P + T VL ACS +EG +Y
Sbjct: 958 LDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EY 1013
Query: 393 FKL 395
F L
Sbjct: 1014 FTL 1016
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 144/310 (46%), Gaps = 30/310 (9%)
Query: 17 NLRTLKQIQALVTINGFNSD----SSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
NL+ KQIQA GFN+D S L I G +P A+ ++F +I+ PD
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD--MPNAL----ELFGEISRPDEVA 1167
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+ T+I G ++ + A+ +Y M ++P+++TF+ ++KA + L G +H +V
Sbjct: 1168 WTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVV 1227
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD---VVAWSSLTAGYARRGELSM 189
K + + FV SL+ + CG + A +F KMD VV W+++ G A+ G +
Sbjct: 1228 KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF---RKMDVRKVVFWNAMLLGLAQHGHVDE 1284
Query: 190 ARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEVPKR-----DVVSWNAMI 240
A +LF M D V++ +++ + G +A + F+ + K ++ ++ ++
Sbjct: 1285 ALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLV 1344
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL--LDMT 298
G ++A + M + +LL AC GD E K+V L LD +
Sbjct: 1345 DALGRAGRIQEAENVIASMPF---KASASMYRALLGACRTKGDAETAKRVADKLLALDPS 1401
Query: 299 SGVAKVLHGN 308
A VL N
Sbjct: 1402 DSSAYVLLSN 1411
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 120/319 (37%), Gaps = 72/319 (22%)
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
+G H +IV G +R++ N+LI ++ CG L +A +FD + D+V W+S+ A YA
Sbjct: 629 LGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688
Query: 183 RRGELSMARSL-----------FDEMPVR------------------------------- 200
+ + S L F R
Sbjct: 689 QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748
Query: 201 --DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
DL ++ Y K G + +A LF+++P+RD V WN M+ YV +AL F
Sbjct: 749 ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSA 808
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA-LIDMYAKC 317
G PD +HC + + S V+ +A + Y
Sbjct: 809 FHRSGFFPD-------------------FSNLHCVIGGVNSDVSNNRKRHAEQVKAY--- 846
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
A+++F + ++ W+ + G +I F+ + R + +T V +L
Sbjct: 847 -----AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIIL 901
Query: 378 VACSHAGKVEEGKKYFKLM 396
A A ++ G++ L+
Sbjct: 902 SAAVGADDLDLGEQIHALV 920
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 281 LGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
+ DL++GK+ H ++ TSG + N LI MY+KCGS+ A +VF DRD+ TW+
Sbjct: 624 MADLKLGKRAHARIV--TSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWN 681
Query: 340 TLIGGLAFHGFAEESIAMFREMQRL 364
+++ A+ FA+ S E RL
Sbjct: 682 SILA--AYAQFADSSYENVLEGFRL 704
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 163/543 (30%), Positives = 251/543 (46%), Gaps = 88/543 (16%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
+QI ALV + F L+ YS + G + A K F+ E D +NT+I
Sbjct: 914 EQIHALVIKSSFAPVVPVSNSLMNMYSKA----GVVYAAEKTFINSPELDLISWNTMISS 969
Query: 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT---RLLYRNMGFCVHGKIVKYGF 136
AQ+ ++A+ + + + +KP++FT + VL+AC+ Y +G VH +K G
Sbjct: 970 YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR---SL 193
+ FV +LI ++ G ++ A L G D+ +W+++ GY + + A SL
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089
Query: 194 FDEMPV------------------------------------RDLVSWNVMITGYAKQGE 217
EM + DL + ++ Y K G+
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD 1149
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
M A ELF E+ + D V+W MISGY+ G AL ++ MR G +PD+ T +L+ A
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
+ L LE GK++H ++ + + + G +L+DMY KCGS++ A VF M R V
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFV-GTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+ ++ GLA HG +E++ +FR MQ ++P ++TF+GVL ACSH+G E KYF M
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMF 1328
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
Y I P I HY GD E
Sbjct: 1329 KTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETA 1388
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ +LL + +S YVLLSNIYA+ +W+ V R +M ++KK PG S I+ +K
Sbjct: 1389 KRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNK 1448
Query: 479 AFL 481
L
Sbjct: 1449 VHL 1451
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 170/363 (46%), Gaps = 26/363 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQ-----SQNPLDAVFLYTQMEKCSIKPNKFT 107
G++ A ++F K ++ D +N+I+ AQ +N L+ L+ + + + T
Sbjct: 660 GSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLT 719
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
+ +LK C + + VHG VK GFE + FV +L+ + G + A +LFD
Sbjct: 720 LAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP 779
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGY--------AKQ 215
+ D V W+ + Y A F D + + +I G +
Sbjct: 780 ERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRH 839
Query: 216 GEMEKAN--ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
E KA ++F ++ +WN ++ ++ G A++ F+ + D VT++
Sbjct: 840 AEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVI 899
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRD 332
+L+A DL++G+++H L + S A V+ N+L++MY+K G + A + F+ +
Sbjct: 900 ILSAAVGADDLDLGEQIHA--LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPE 957
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
D+ +W+T+I A + E+I FR++ R ++P + T VL ACS +EG +Y
Sbjct: 958 LDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EY 1013
Query: 393 FKL 395
F L
Sbjct: 1014 FTL 1016
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 144/310 (46%), Gaps = 30/310 (9%)
Query: 17 NLRTLKQIQALVTINGFNSD----SSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
NL+ KQIQA GFN+D S L I G +P A+ ++F +I+ PD
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD--MPNAL----ELFGEISRPDEVA 1167
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+ T+I G ++ + A+ +Y M ++P+++TF+ ++KA + L G +H +V
Sbjct: 1168 WTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVV 1227
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD---VVAWSSLTAGYARRGELSM 189
K + + FV SL+ + CG + A +F KMD VV W+++ G A+ G +
Sbjct: 1228 KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF---RKMDVRKVVFWNAMLLGLAQHGHVDE 1284
Query: 190 ARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEVPKR-----DVVSWNAMI 240
A +LF M D V++ +++ + G +A + F+ + K ++ ++ ++
Sbjct: 1285 ALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLV 1344
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL--LDMT 298
G ++A + M + +LL AC GD E K+V L LD +
Sbjct: 1345 DALGRAGRIQEAENVIASMPF---KASASMYRALLGACRTKGDAETAKRVADKLLALDPS 1401
Query: 299 SGVAKVLHGN 308
A VL N
Sbjct: 1402 DSSAYVLLSN 1411
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 44/189 (23%)
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
+G H +IV G +R++ N+LI ++ CG L +A +FD + D+V W+S+ A YA
Sbjct: 629 LGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688
Query: 183 RRGELSMARSL-----------FDEMPVR------------------------------- 200
+ + S L F R
Sbjct: 689 QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748
Query: 201 --DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
DL ++ Y K G + +A LF+++P+RD V WN M+ YV +AL F
Sbjct: 749 ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSA 808
Query: 259 MRSVGERPD 267
G PD
Sbjct: 809 FHRSGFXPD 817
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 281 LGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
+ DL++GK+ H ++ TSG + N LI MY+KCGS+ A +VF DRD+ TW+
Sbjct: 624 MADLKLGKRAHARIV--TSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWN 681
Query: 340 TLIGGLAFHGFAEESIAMFREMQRL 364
+++ A+ FA+ S E RL
Sbjct: 682 SILA--AYAQFADSSYENVLEGFRL 704
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 220/424 (51%), Gaps = 75/424 (17%)
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151
++ M+ I +++T++ +LK+C+ L G CVHG++++ GF +R
Sbjct: 611 FFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGEVIRTGF--HRL---------- 658
Query: 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG 211
G ++ VV Y G + A+ +FDEMP R++V WN+M+ G
Sbjct: 659 -------------GKVRIGVVEL------YTSGGRMGDAQKVFDEMPERNVVVWNLMVRG 699
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
+ G++++ F ++ +R +VSWN+MIS CG +++ALE+F EM G PD+ T+
Sbjct: 700 FCDSGDVQRGLSFFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATV 759
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAK--VLHGNALIDMYAKCGSIERAIEVFLG 329
+++L A LG L+ GK +H T ++G+ K + GNAL+D Y K G +E A +F
Sbjct: 760 VTMLPISASLGVLDTGKWIHSTA--ESNGLIKDFITVGNALVDFYCKSGDLEAATAIFRK 817
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEE 388
M+ R+V +W+T+I G A +G E I +F M + KV P E TF+GVL CS+ G+VE
Sbjct: 818 MQRRNVVSWNTMISGSAVNGKGESGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVER 877
Query: 389 GKKYFKLMRDEYNIEPNIRHYGV------------------------------------- 411
G++ F LM + + +EP HYG
Sbjct: 878 GEELFGLMMERFKLEPRTEHYGAMVDLMSRSGRIREAFEFLRNMPVNANAAMWGSLLSAC 937
Query: 412 --HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469
HGDV+L LA L+ + SG+YVLLSN+YA G W VEKVR LM + ++K G
Sbjct: 938 RSHGDVKLAELAAMELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNCLRKTTG 997
Query: 470 CSLI 473
S I
Sbjct: 998 QSTI 1001
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 159/370 (42%), Gaps = 53/370 (14%)
Query: 11 LWKKCTNLRTL---KQIQALVTINGFNSDSS---ALRELIYSGSVVIPGAINYAHKMFVK 64
L K C++L L K + V GF+ + EL SG G + A K+F +
Sbjct: 630 LLKSCSSLSDLRFGKCVHGEVIRTGFHRLGKVRIGVVELYTSG-----GRMGDAQKVFDE 684
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+ E + ++N ++RG S + + + QM + SI S L C R
Sbjct: 685 MPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNSMIS-SLSKCGRDREALEL 743
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF-----DGDAKMDVVAWSSLTA 179
FC +++ GF+ + +++ A+ G L+T + +G K + ++L
Sbjct: 744 FC---EMIDQGFDPDEATVVTMLPISASLGVLDTGKWIHSTAESNGLIKDFITVGNALVD 800
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
Y + G+L A ++F +M R++VSWN MI+G A G+ E +LF+
Sbjct: 801 FYCKSGDLEAATAIFRKMQRRNVVSWNTMISGSAVNGKGESGIDLFD------------- 847
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
M EE + P++ T L +L C+ G +E G+++ +++
Sbjct: 848 --------------AMIEEGKVA---PNEATFLGVLACCSYTGQVERGEELFGLMMERFK 890
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMF 358
+ H A++D+ ++ G I A E M + + + W +L+ HG + +A
Sbjct: 891 LEPRTEHYGAMVDLMSRSGRIREAFEFLRNMPVNANAAMWGSLLSACRSHG--DVKLAEL 948
Query: 359 REMQRLKVRP 368
M+ +K+ P
Sbjct: 949 AAMELVKIEP 958
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 30/190 (15%)
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
+ ++ W ++ ++L F M+S G D+ T LL +C+ L DL GK V
Sbjct: 587 KQMLKWLPANQRHLHMAAGPKSLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCV 646
Query: 291 HCTLLDM----------------TSG--------------VAKVLHGNALIDMYAKCGSI 320
H ++ TSG V+ N ++ + G +
Sbjct: 647 HGEVIRTGFHRLGKVRIGVVELYTSGGRMGDAQKVFDEMPERNVVVWNLMVRGFCDSGDV 706
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+R + F M +R + +W+++I L+ G E++ +F EM P E T V +L
Sbjct: 707 QRGLSFFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTMLPIS 766
Query: 381 SHAGKVEEGK 390
+ G ++ GK
Sbjct: 767 ASLGVLDTGK 776
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 146/500 (29%), Positives = 247/500 (49%), Gaps = 80/500 (16%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F + + D +N +I + A+ + +M++ +PN TF+ V+ +CTR
Sbjct: 160 AIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTR 219
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
LL G VH ++++ + FV ++L+ + CG L A +F+ + + + W+++
Sbjct: 220 LLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAM 279
Query: 178 TAGYARRGE----LSMARSLFDEMPVRDLVSWNVMITG---------------------- 211
GY+ +G+ + + + DE L++ +I
Sbjct: 280 ITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRI 339
Query: 212 -------------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
Y K G + A +F + K +VVSWN MISG+V+ G + QAL +++
Sbjct: 340 DVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDN 399
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M+ +PD +T S L+AC+ L L+ G+++H +++ +++ G AL+DMYAKCG
Sbjct: 400 MKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMG-ALLDMYAKCG 458
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
++ A ++F + RD+ +W+++I HG A E++ +F EMQ+L VR +TF+ VL
Sbjct: 459 DVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLS 518
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------- 410
ACSHAG V+EG YF M +Y+I+P I HY
Sbjct: 519 ACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSKETRSD 578
Query: 411 ------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
+H + LG K L+ + D+ Y+LLSN+YAS +W+ V KVR+
Sbjct: 579 IGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRK 638
Query: 459 MDDSDIKKQPGCSLIEADDK 478
M + +KK PGCS IE + +
Sbjct: 639 MKELGLKKSPGCSWIEINQR 658
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/457 (25%), Positives = 208/457 (45%), Gaps = 53/457 (11%)
Query: 13 KKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP- 68
+ CT+ + LKQ I + GF S+ + LI G A +F P
Sbjct: 11 RTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLI--GFYFSCHDYASAELVFQTNDCPL 68
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCV 127
D ++N ++ + ++A+ L+ Q+ S ++P+ +T+ VLKAC L G +
Sbjct: 69 DVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRI 128
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H ++K G ++ FV +SL+ +A C A LFD + DV W+++ + Y + G+
Sbjct: 129 HNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKA 188
Query: 188 SMARSLFDEMPV------------------------------RDLVSWNVMITG------ 211
MA FD+M R+L+ +++
Sbjct: 189 EMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSAL 248
Query: 212 ---YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
Y K G +E A E+F ++P+++ ++WNAMI+GY L G ++ +E+ M G +P
Sbjct: 249 VDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTL 308
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
+T+ S++ A + L GK +H +L V + +LID Y KCG + A +F
Sbjct: 309 MTLTSIIYASSRSVQLRHGKFIHGYILRNRIDV-DIFIDVSLIDFYFKCGYVSSAETIFR 367
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
+ +V +W+ +I G G +++ ++ M+ V+P +TF L ACS +++
Sbjct: 368 TISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDK 427
Query: 389 GKKY------FKLMRDEYNIEPNIRHYGVHGDVELGR 419
G++ KL +E + + Y GDV+ R
Sbjct: 428 GRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEAR 464
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 152/321 (47%), Gaps = 44/321 (13%)
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD-GDAKMD 170
L+ CT G +H +I GF+ N + SLI F+ +C D +A ++F D +D
Sbjct: 10 LRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTNDCPLD 69
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS-------------------------- 204
V W++L + Y A LFD++ V
Sbjct: 70 VSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIH 129
Query: 205 ---------WNVMITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
W+V + YAK + A +LF+E P+RDV WNA+IS Y G +
Sbjct: 130 NHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAE 189
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNA 309
AL+ F++M+ +G P+ VT ++++C L +LE GK+VH L++ + A VL +A
Sbjct: 190 MALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVL--SA 247
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
L+DMY KCG +E A EVF + ++ TW+ +I G + G + I + M +PT
Sbjct: 248 LVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPT 307
Query: 370 EITFVGVLVACSHAGKVEEGK 390
+T ++ A S + ++ GK
Sbjct: 308 LMTLTSIIYASSRSVQLRHGK 328
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 158/340 (46%), Gaps = 47/340 (13%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F KI + +N +I G + + + L +M KP T + ++
Sbjct: 256 GCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSII 315
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A +R + G +HG I++ + + F+ SLI F+ CG +++A +F +K +VV
Sbjct: 316 YASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVV 375
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP---------------------------------- 198
+W+ + +G+ G A ++D M
Sbjct: 376 SWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCI 435
Query: 199 VRDLVSWNVMITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
+ + N ++ G YAK G++++A +LF+++PKRD+VSW +MI Y G +AL
Sbjct: 436 INHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEAL 495
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL---DMTSGVAKVLHGNAL 310
+F+EM+ + R D VT L++L+AC+ G ++ G ++ D+ G+ H + L
Sbjct: 496 RLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIE---HYSCL 552
Query: 311 IDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFH 348
ID+ + G + A E+ ++ D+ STL H
Sbjct: 553 IDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLH 592
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 130/255 (50%), Gaps = 13/255 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F I++ + +N +I G N + A+ +Y M++ +KP+ TFS L
Sbjct: 357 GYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTL 416
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC++L + G +H I+ + E N V +L+ +A CGD++ A LF K D+V
Sbjct: 417 SACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLV 476
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP---VR-DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+S+ Y G+ S A LFDEM VR D V++ +++ + G +++ FNE+
Sbjct: 477 SWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEM 536
Query: 229 P-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS-LLTACADLG 282
K + ++ +I L G + E +E ++ E D+ +LS L +AC
Sbjct: 537 VVQYDIKPGIEHYSCLID---LLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHN 593
Query: 283 DLEVGKKVHCTLLDM 297
+ +G ++ L+++
Sbjct: 594 NFVLGIQIGKMLIEV 608
>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 229/463 (49%), Gaps = 75/463 (16%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A ++ +T+ +N +I G +A L +M I+ +++T++ V+ A +
Sbjct: 227 ARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASN 286
Query: 118 LLYRNMGFCVHG----KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
N+G VH +V+ F V N+LI + CG
Sbjct: 287 AGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCG------------------- 327
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233
+L AR +FD+MPV+DLVSWN +++G +E+AN +F E+P R +
Sbjct: 328 ------------KLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSL 375
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
++W MISG G ++ L++F +M+ G P D + +C+ LG L+ G+++H
Sbjct: 376 LTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQ 435
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
++ + + + GNALI MY++CG +E A VFL M D +W+ +I LA HG +
Sbjct: 436 IIQLGHDSSLSV-GNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQ 494
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
+I ++ +M + + P ITF+ +L ACSHAG V+EG+ YF MR Y I P HY
Sbjct: 495 AIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLI 554
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
+HG++ELG A RLL + + G
Sbjct: 555 DLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDG 614
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
Y+ LSN+YA+ G+W+ V +VRKLM + +KK+PGCS IE ++
Sbjct: 615 TYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVEN 657
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/438 (26%), Positives = 192/438 (43%), Gaps = 73/438 (16%)
Query: 53 GAINYAHKMF--VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF 110
G I AH++F ++ DT YN +I + S + A+ L+ QM++ P+ FTFS
Sbjct: 76 GNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSS 135
Query: 111 VLKACTRLLYRNMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168
VL A + L+ C +H ++ K+G V N+L+ + +C +S L +
Sbjct: 136 VLGALS-LIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCA----SSPLVNSCVL 190
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPV--RDLVSWNVMITGYAKQGEMEKANELFN 226
M + AR LFDE P RD +W +I GY + ++ A EL
Sbjct: 191 M------------------AAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLE 232
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+ V+WNAMISGYV G ++A ++ M S+G + D+ T S+++A ++ G +
Sbjct: 233 GMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNI 292
Query: 287 GKKVHCTLLDMT---SGVAKVLHGNALIDMYAKCGS------------------------ 319
G++VH +L SG + NALI +Y +CG
Sbjct: 293 GRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILS 352
Query: 320 -------IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
IE A +F M R + TW+ +I GLA +GF EE + +F +M+ + P +
Sbjct: 353 GCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYA 412
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDE 432
+ G + +CS G ++ G++ + I G + +G E
Sbjct: 413 YAGAIASCSVLGSLDNGQQ----------LHSQIIQLGHDSSLSVGNALITMYSRCGLVE 462
Query: 433 SGDYVLLSNIYASRGEWN 450
+ D V L+ Y WN
Sbjct: 463 AADTVFLTMPYVDSVSWN 480
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 128/322 (39%), Gaps = 79/322 (24%)
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+L + + VH I+ GF+ + N LI + ++ A LFD K D+VA +
Sbjct: 7 AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66
Query: 176 SLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233
++ + Y+ G + +A LF+ P +RD VS+N MIT ++ +
Sbjct: 67 TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHD---------------- 110
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG-KKVHC 292
AL++F +M+ +G PD T S+L A + + D E +++HC
Sbjct: 111 ---------------GHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHC 155
Query: 293 TLLDMTS-GVAKVLHGNALIDMYAKCGS-------------------------------- 319
+ + V VL NAL+ Y C S
Sbjct: 156 EVFKWGALSVPSVL--NALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTT 213
Query: 320 ----------IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
+ A E+ GM D W+ +I G GF EE+ + R M L ++
Sbjct: 214 IIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLD 273
Query: 370 EITFVGVLVACSHAGKVEEGKK 391
E T+ V+ A S+AG G++
Sbjct: 274 EYTYTSVISAASNAGLFNIGRQ 295
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 146/316 (46%), Gaps = 24/316 (7%)
Query: 36 DSSALRELIYSGSVVIPGAINY-----AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAV 90
D +++L+ S + ++ G +N A+ +F ++ + +I G AQ+ + +
Sbjct: 337 DKMPVKDLV-SWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGL 395
Query: 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150
L+ QM+ ++P + ++ + +C+ L + G +H +I++ G + + V N+LI +
Sbjct: 396 KLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMY 455
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWN 206
+ CG + A +F +D V+W+++ A A+ G A L+++M D+ +++
Sbjct: 456 SRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFL 515
Query: 207 VMITGYAKQGEMEKANELFNEV-------PKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
+++ + G +++ F+ + P+ D ++ +I GM +A + E M
Sbjct: 516 TILSACSHAGLVKEGRHYFDTMRVCYGITPEED--HYSRLIDLLCRAGMFSEAKNVTESM 573
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
P +LL C G++E+G + LL++ +L +MYA G
Sbjct: 574 PF---EPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTY--ISLSNMYAALGQ 628
Query: 320 IERAIEVFLGMRDRDV 335
+ V MR+R V
Sbjct: 629 WDEVARVRKLMRERGV 644
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 157/517 (30%), Positives = 246/517 (47%), Gaps = 76/517 (14%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYA 58
R N H L K + + +K+ + A V GF L+ G V G +
Sbjct: 88 RPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALL--GFYVACGLVGKG 145
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
++F ++ +P ++ IIR P A+ L+ M + + P+ S V+ AC L
Sbjct: 146 RQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLL 205
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
+ +H I K G E + FV ++LI + CG L+
Sbjct: 206 GDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLD--------------------- 244
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
YA R F E P++++V WN MI + +E +LF +P RDVVSWN+
Sbjct: 245 --YAYR--------FFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNS 294
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MI G+ G ++AL F EM G P+ +T+LS L+ACA G L+ G +H +D
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIH-AYVDKN 353
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
++LIDMY+KCG I++A+++F RD+ TW++++ GLA HG E+++ F
Sbjct: 354 DMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYF 413
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
+M+ +V+P ++T VGVL AC+HAG +++G YF+ M + + P + HYG
Sbjct: 414 SKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGR 473
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
VH +VELG +A +RLL + + V+L
Sbjct: 474 MGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPWARVML 533
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
SN+YA +W+R +RK + +KK PGCS IE +
Sbjct: 534 SNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVN 570
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 157/517 (30%), Positives = 246/517 (47%), Gaps = 76/517 (14%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYA 58
R N H L K + + +K+ + A V GF L+ G V G +
Sbjct: 88 RPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALL--GFYVACGLVGKG 145
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
++F ++ +P ++ IIR P A+ L+ M + + P+ S V+ AC L
Sbjct: 146 RQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLL 205
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
+ +H I K G E + FV ++LI + CG L+
Sbjct: 206 GDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLD--------------------- 244
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
YA R F E P++++V WN MI + +E +LF +P RDVVSWN+
Sbjct: 245 --YAYR--------FFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNS 294
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MI G+ G ++AL F EM G P+ +T+LS L+ACA G L+ G +H +D
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIH-AYVDKN 353
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
++LIDMY+KCG I++A+++F RD+ TW++++ GLA HG E+++ F
Sbjct: 354 DMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYF 413
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
+M+ +V+P ++T VGVL AC+HAG +++G YF+ M + + P + HYG
Sbjct: 414 SKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLGR 473
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
VH +VELG +A +RLL + + V+L
Sbjct: 474 MGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXPRDPWARVML 533
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
SN+YA +W+R +RK + +KK PGCS IE +
Sbjct: 534 SNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVN 570
>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 154/536 (28%), Positives = 253/536 (47%), Gaps = 82/536 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
+ I LV +G+ D L+ G + ++F ++ E D +NT+I
Sbjct: 127 RMIHTLVVKSGYVCDVVVASSLV--GMYAKFNLFENSLQVFDEMPERDVASWNTVISCFY 184
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
QS A+ L+ +ME +PN + + + AC+RLL+ G +H K VK GFE + +
Sbjct: 185 QSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEY 244
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM---- 197
V ++L+ + C L A +F + +VAW+S+ GY +G+ + + M
Sbjct: 245 VNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEG 304
Query: 198 ------------------------------PVRDLVSWNV-----MITGYAKQGEMEKAN 222
+R +V+ ++ +I Y K GE A
Sbjct: 305 TRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAE 364
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+F++ K SWN MIS Y+ G +A+E++++M SVG +PD VT S+L AC+ L
Sbjct: 365 TVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLA 424
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
LE GK++H ++ + ++L +AL+DMY+KCG+ + A +F + +DV +W+ +I
Sbjct: 425 ALEKGKQIHLSISESRLETDELLL-SALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMI 483
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
HG E++ F EMQ+ ++P +T + VL AC HAG ++EG K+F MR +Y I
Sbjct: 484 SAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGI 543
Query: 403 EPNIRHYG----------------------------------------VHGDVELGRLAN 422
EP I HY +H + LG
Sbjct: 544 EPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIA 603
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ L+ D++ Y++L N+YAS W+ +VR M + ++K+PGCS IE DK
Sbjct: 604 RLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDK 659
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 13/230 (5%)
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKR-DVVSWNAMISGYVLCGMNKQALEMFEE 258
RD+V +I Y + A +F R DV WN+++SGY M LE+F+
Sbjct: 37 RDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKR 96
Query: 259 MRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
+ + PD T +++ A LG +G+ +H TL+ + V V+ ++L+ MYAK
Sbjct: 97 LLNCSICVPDSFTFPNVIKAYGALGREFLGRMIH-TLVVKSGYVCDVVVASSLVGMYAKF 155
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
E +++VF M +RDV++W+T+I G AE+++ +F M+ P ++ +
Sbjct: 156 NLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAI 215
Query: 378 VACSHAGKVEEG--------KKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419
ACS +E G KK F+L DEY + YG +E+ R
Sbjct: 216 SACSRLLWLERGKEIHRKCVKKGFEL--DEYVNSALVDMYGKCDCLEVAR 263
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 239/463 (51%), Gaps = 74/463 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
G + A F K+ E +N ++ G AQ P + + L+ M +++P++ T+ V
Sbjct: 214 GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTV 273
Query: 112 LKACTRLLYRNMGFCVHGKIVK-----YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
+ +C+ L C+ IV+ GF N FV+ +L+ HA CG+L A +F+
Sbjct: 274 ISSCSSL----GDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFE-- 327
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
++ V + R V WN MI+ YA+ G++ A LF+
Sbjct: 328 -QLGVYKY-------------------------RSSVPWNAMISAYARVGDLPSARHLFD 361
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLE 285
++P+RD VSWN+MI+GY G + +A+++FEEM S +PD+VTM+S+ +AC LG+L
Sbjct: 362 KMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELG 421
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
+G L + ++ ++ N+LI MY++CGS++ A+ +F M RD+ +++TLI G
Sbjct: 422 LGNWAVSILKENHIQISISVY-NSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGF 480
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR----DEY- 400
A HG ESI + +M+ + P IT++ +L ACSHAG + EG++ F+ ++ D Y
Sbjct: 481 AEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESIKFPDVDHYA 540
Query: 401 ----------------------NIEPNIRHYG-------VHGDVELGRLANKRLLNMRKD 431
+EP+ YG +H VELG LA +L +
Sbjct: 541 CMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPH 600
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
SG+YVLLSNIYAS G W +KVR M +KK G S +E
Sbjct: 601 NSGNYVLLSNIYASAGRWKDGDKVRDTMRKQGVKKTTGLSWLE 643
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 216/432 (50%), Gaps = 54/432 (12%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD---- 69
K TNL L+Q+ A + + + + + L+ + ++ + +Y +F T PD
Sbjct: 12 KITNLHRLRQLHAQLVHHSLHHQNHWVVLLLTQCTRLLAPS-SYTCHIFHAATHPDVRVF 70
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
TFM + ++Q P V L+ M C+IKPN +S ++K+ +M F H
Sbjct: 71 TFMLKYYSQIGVRAQVP---VSLFKHMLRHCNIKPNTSFYSVMMKSAGS---ESMLFLAH 124
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
++K G++ + +VRN ++ +A G + A LFD V W+ + +GY + G
Sbjct: 125 --VLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 182
Query: 189 MARSLF----DEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
A +LF D+ R++++W MITG+AK+G ++ A F+++P+R VVSWNAM+SGY
Sbjct: 183 EASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 242
Query: 245 LCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
G ++ + +F +M S G +PD+ T ++++++C+ LGD + + + L D
Sbjct: 243 QGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPN 302
Query: 304 VLHGNALIDMYAKCGSIERAIEVF--LG-------------------------------- 329
AL+DM+AKCG++E A ++F LG
Sbjct: 303 YFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDK 362
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEE 388
M RD +W+++I G +G + ++I +F EM +P E+T V V AC H G++
Sbjct: 363 MPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGL 422
Query: 389 GKKYFKLMRDEY 400
G ++++ +
Sbjct: 423 GNWAVSILKENH 434
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 146/329 (44%), Gaps = 17/329 (5%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KC NL +I + + + S S +I + + V G + A +F K+ + DT +
Sbjct: 315 KCGNLEAAHKIFEQLGVYKYRS-SVPWNAMISAYARV--GDLPSARHLFDKMPQRDTVSW 371
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
N++I G Q+ + A+ L+ +M KP++ T V AC L +G +
Sbjct: 372 NSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILK 431
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
+ + + V NSLI ++ CG + A ++F A D+V++++L +G+A G +
Sbjct: 432 ENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIE 491
Query: 193 LFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
L +M D +++ ++T + G + + LF + DV + MI G
Sbjct: 492 LLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESIKFPDVDHYACMIDMLGRAGR 551
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
++A+++ + M P SLL A + +E+G+ L + + GN
Sbjct: 552 LEEAMKLIQSMPM---EPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNS----GN 604
Query: 309 ALI--DMYAKCGSIERAIEVFLGMRDRDV 335
++ ++YA G + +V MR + V
Sbjct: 605 YVLLSNIYASAGRWKDGDKVRDTMRKQGV 633
>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 649
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 213/382 (55%), Gaps = 42/382 (10%)
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K F N NS++ + GD+ A LFD + D +W++L + Y + + A
Sbjct: 270 KRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVERDNCSWNTLISCYVQISNMEEASK 329
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
LF EMP D++SWN +I+G A++G++ A + F +P ++++SWN +I+GY K A
Sbjct: 330 LFREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGA 389
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
+++F EM+ GERPD T+ S+++ L DL +GK++H + + + N+LI
Sbjct: 390 IKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKTVLPDSPI--NNSLIT 447
Query: 313 MYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
MY++CG+I A VF ++ +DV TW+ +IGG A HG A E++ +F+ M+RLK+ PT I
Sbjct: 448 MYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTYI 507
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TF+ VL AC+HAG VEEG + FK M ++Y IEP + H+
Sbjct: 508 TFISVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLINT 567
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
VH +VEL +A L+ + + S YVLL N+YA+ G+W+
Sbjct: 568 MPFKPDKAVWGALLGACRVHNNVELALVAADALIRLEPESSAPYVLLYNMYANLGQWDDA 627
Query: 453 EKVRKLMDDSDIKKQPGCSLIE 474
E VR LM++ ++KKQ G S ++
Sbjct: 628 ESVRVLMEEKNVKKQAGYSWVD 649
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 136/319 (42%), Gaps = 81/319 (25%)
Query: 154 GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY- 212
G ++ A LFD + D V W+S+ +GY +R E++ AR LFDEMP RD+VSWN++++GY
Sbjct: 52 GRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSGYF 111
Query: 213 --AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM----------- 259
+E+ LF +P+RD VSWN +ISGY G QAL++F M
Sbjct: 112 SCCGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAV 171
Query: 260 -----------------RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
R++ E D ++ +L++ G+L++ + + G
Sbjct: 172 ITGFLLNGDVESAVGFFRTMPEH-DSTSLCALISGLVRNGELDLAAGILRECGNGDDGKD 230
Query: 303 KVLHG-NALIDMYAKCGSIER--------------------------------------- 322
++H N LI Y + G +E
Sbjct: 231 DLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKA 290
Query: 323 -----AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
A E+F M +RD +W+TLI EE+ +FREM P +++ ++
Sbjct: 291 GDIVFARELFDRMVERDNCSWNTLISCYVQISNMEEASKLFREMP----SPDVLSWNSII 346
Query: 378 VACSHAGKVEEGKKYFKLM 396
+ G + K +F+ M
Sbjct: 347 SGLAQKGDLNLAKDFFERM 365
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 115/219 (52%), Gaps = 14/219 (6%)
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
R G +S AR+LFD M RD V+WN MI+GY ++ E+ +A +LF+E+P+RDVVSWN ++SG
Sbjct: 50 RSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSG 109
Query: 243 YVLCGMNK---QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
Y C ++ + +FE M + D V+ ++++ A G ++ K+ + + +
Sbjct: 110 YFSCCGSRFVEEGRRLFELM----PQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNA 165
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
+ NA+I + G +E A+ F M + D ++ LI GL +G + + + R
Sbjct: 166 -----VSYNAVITGFLLNGDVESAVGFFRTMPEHDSTSLCALISGLVRNGELDLAAGILR 220
Query: 360 EMQRLKVRPTEI--TFVGVLVACSHAGKVEEGKKYFKLM 396
E ++ + ++ G VEE ++ F ++
Sbjct: 221 ECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVI 259
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 98/421 (23%), Positives = 175/421 (41%), Gaps = 84/421 (19%)
Query: 33 FNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFL 92
N + L LI SG I+ A +F + DT +N++I G Q + A L
Sbjct: 38 LNQSNKKLSNLIRSGR------ISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQL 91
Query: 93 YTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG---FEF----NRFVRNS 145
+ +M P + S+ L+ C + V+ G FE + N+
Sbjct: 92 FDEM------PRRDVVSW------NLIVSGYFSCCGSRFVEEGRRLFELMPQRDCVSWNT 139
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
+I +A G ++ A LF+ + + V+++++ G+ G++ A F MP D S
Sbjct: 140 VISGYAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGFFRTMPEHDSTSL 199
Query: 206 NVMITGYAKQGEM-------------------------------------EKANELFNEV 228
+I+G + GE+ E+A LF+ +
Sbjct: 200 CALISGLVRNGELDLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVI 259
Query: 229 P-------------KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
P +R+VVSWN+M+ YV G A E+F+ M ER D+ + +L+
Sbjct: 260 PDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMV---ER-DNCSWNTLI 315
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+ + ++E K+ +M S VL N++I A+ G + A + F M +++
Sbjct: 316 SCYVQISNMEEASKL---FREMPS--PDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNL 370
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
+W+T+I G + + +I +F EMQ RP + T V+ + + GK+ +L
Sbjct: 371 ISWNTIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQL 430
Query: 396 M 396
+
Sbjct: 431 V 431
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 151/336 (44%), Gaps = 35/336 (10%)
Query: 24 IQALVTINGFNSDSSALREL----IYSGSVVIPGA-----INYAHKMFVKITEPDTFMYN 74
I V I+ S RE+ + S + +I G +N A F ++ + +N
Sbjct: 315 ISCYVQISNMEEASKLFREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWN 374
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
TII G ++++ A+ L+++M+ +P+K T S V+ T L+ +G +H + K
Sbjct: 375 TIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKT 434
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM--DVVAWSSLTAGYARRGELSMARS 192
+ + NSLI ++ CG + A +F+ + K+ DV+ W+++ GYA G + A
Sbjct: 435 VLP-DSPINNSLITMYSRCGAIVDACTVFN-EIKLYKDVITWNAMIGGYASHGSAAEALE 492
Query: 193 LFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV-------PKRDVVSWNAMIS 241
LF M + +++ ++ A G +E+ F + P+ V + +++
Sbjct: 493 LFKLMKRLKIHPTYITFISVLNACAHAGLVEEGWRQFKSMINDYGIEPR--VEHFASLVD 550
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL--LDMTS 299
+ G Q E + + ++ +PD +LL AC ++E+ L L+ S
Sbjct: 551 ---ILGRQGQLQEAMDLINTMPFKPDKAVWGALLGACRVHNNVELALVAADALIRLEPES 607
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
VL L +MYA G + A V + M +++V
Sbjct: 608 SAPYVL----LYNMYANLGQWDDAESVRVLMEEKNV 639
>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
Length = 623
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 250/485 (51%), Gaps = 64/485 (13%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
++ A +F ++ + + +NT++ A + DA L+ +M P + S+ +
Sbjct: 121 VDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRM------PVRDAGSWNILL 174
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH------ANCGDLNTASVLFDGDAK 168
T L R+ G + K F R ++ + A G ++ A VLFD +
Sbjct: 175 AT--LVRS------GSVDKARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPE 226
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+VV+W+++ +GY R + A LF +MP RD+ S N+M+TG+ + ++++A ELF+E+
Sbjct: 227 RNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEM 286
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
P+R+VV+W M++GY+ ++ AL +F M G RP+ VT L L AC+DL L GK
Sbjct: 287 PERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGK 346
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
+VH + T + +AL+++YAKCG I A ++F R++D+ +W+ +I A H
Sbjct: 347 QVHQMICKTTFQFDAFVE-SALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHH 405
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH 408
G E+I ++ +MQ RP ++T+V +L ACSH+G V+EG K F+ M ++ +I H
Sbjct: 406 GVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEH 465
Query: 409 Y----------------------------------------GVHGDVELGRLANKRLLNM 428
Y HG+ +G LA + LL
Sbjct: 466 YTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLLQA 525
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLK 488
D +G Y LLSNIYAS G+W ++R M++ +KKQPGCS IE +K ++F +
Sbjct: 526 EPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKV---HVFVAR 582
Query: 489 PKPNS 493
K +S
Sbjct: 583 DKSHS 587
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 145/311 (46%), Gaps = 62/311 (19%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV-RDL 202
N LI A G + A LFDG DVV+W++L + YARRG L AR LFD R++
Sbjct: 46 NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDRPDARRNV 105
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
V+W +++GYA+ +++A LF +P+R+VVSWN M+ Y G A +F+ M
Sbjct: 106 VTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPVR 165
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD--------MTSGVAK----------- 303
++ + +L+ + G ++ +++ + + M GVA+
Sbjct: 166 DAGSWNILLATLVRS----GSVDKARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLF 221
Query: 304 -------VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS-------------------- 336
V+ NA+I Y + I+ A+++F+ M +RD++
Sbjct: 222 DSMPERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARE 281
Query: 337 -----------TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
TW+T++ G +E ++ +F M RP ++TF+G L ACS
Sbjct: 282 LFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAA 341
Query: 386 VEEGKKYFKLM 396
+ EGK+ +++
Sbjct: 342 LCEGKQVHQMI 352
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 43/242 (17%)
Query: 15 CTNLRTL---KQIQALVTINGFNSDS---SALRELIYSGSVVIPGAINYAHKMFVKITEP 68
C++L L KQ+ ++ F D+ SAL +Y+ G I A K+F E
Sbjct: 336 CSDLAALCEGKQVHQMICKTTFQFDAFVESALMN-VYAKC----GEIGLARKLFDLSREK 390
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D +N II A ++A+ LY +M++ +PN T+ +L AC+ H
Sbjct: 391 DLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACS-----------H 439
Query: 129 GKIVKYGFE-FNRFVRNSLIYF---HANC-GDLNTASVLFDGDAKMDV----------VA 173
+V G + F V + I H C DL + + D DAK +
Sbjct: 440 SGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLD-DAKRLIHYLKIKPASGSV 498
Query: 174 WSSLTAGYARRGELSM----ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
WS+L G G S+ AR+L P + ++ ++ YA G+ ++A E+ +E+
Sbjct: 499 WSALLGGCNAHGNESIGNLAARNLLQAEP-DNAGTYTLLSNIYASAGKWKEAAEIRSEMN 557
Query: 230 KR 231
R
Sbjct: 558 NR 559
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 153/517 (29%), Positives = 248/517 (47%), Gaps = 84/517 (16%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
R L KC N+ LKQ A V +G ++ + L L+ + G++++A K+F I
Sbjct: 7 RCLLLLHKCINMNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQ 66
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
P ++NT+I+ L+A+ +++ + + I P+ +T +VLKA R+ ++G
Sbjct: 67 HPTICIFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGES 126
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H +K G N FV NSL+ + + ++ +A +FD ++ V+W+ + GYA G+
Sbjct: 127 IHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGD 186
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ AR LFD V+D W MI+GY + N F
Sbjct: 187 VDTARELFDMATVKDTGIWGAMISGYVQ-------NNCF--------------------- 218
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVA 302
K+ L MF M+ PD+ ++++L+ACA +G L+ G +H L L +T V+
Sbjct: 219 ---KEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVS 275
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
LIDMYAKCG ++ A +F M RD W+ +I G+A G E +I +F EM+
Sbjct: 276 -----TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEME 330
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
+ ++P ITF+ VL ACS++G V+EG + + M + IEP HYG
Sbjct: 331 KAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRF 390
Query: 412 --------------------------------HGDVELGRLANKRLLNMRKDESGDYVLL 439
HG + +A +RL + + SG YVLL
Sbjct: 391 EEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLER-HSGAYVLL 449
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
SN+YA+ G+ ++VR +M ++K PGCS I+ +
Sbjct: 450 SNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVN 486
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 153/507 (30%), Positives = 246/507 (48%), Gaps = 83/507 (16%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F + E DT ++NT+I G +++ D++ ++ M + + T + VL A
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L +G + K G + +V LI ++ CG +LFD + D+++++++
Sbjct: 227 LQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM 286
Query: 178 TAGYARRGELSMARSLFDEM--------------------PVRDL--------VSWNVMI 209
+GY E A +LF E+ P L +S + I
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346
Query: 210 -----------TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
T Y + E++ A +LF+E P++ + SWNAMISGY G+ +A+ +F+E
Sbjct: 347 ILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQE 406
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M P+ VT+ S+L+ACA LG L +GK VH L+ + V AL+DMYAKCG
Sbjct: 407 MMP-QLSPNPVTVTSILSACAQLGALSIGKWVH-GLIKSERLESNVYVSTALVDMYAKCG 464
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
SI A ++F M D++V TW+ +I G HG +E++ +F EM + + PT +TF+ +L
Sbjct: 465 SIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILY 524
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------- 410
ACSH+G V EG + F M + Y +P HY
Sbjct: 525 ACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGP 584
Query: 411 -----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459
+H + E+ +A+KRL + + G YVLLSNIY++ + + VR+++
Sbjct: 585 AVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVV 644
Query: 460 DDSDIKKQPGCSLIEADDKAFLQYLFN 486
+ K PGC+LIE DD+ QY+F
Sbjct: 645 KKRKLAKTPGCTLIEIDDQ---QYVFT 668
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/439 (23%), Positives = 217/439 (49%), Gaps = 51/439 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L T L L QIQA + ++G + D S++ +L + GA+ + ++F K+++PD
Sbjct: 20 LLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHK--FFDLGAVAHVRQLFNKVSKPDL 77
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F++N +IRG + + P ++FLYT + +K +++P+ FT++F + A +RL +G +H
Sbjct: 78 FLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHA 137
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ G N FV ++++ + A +FD + D V W+++ +G++R
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFED 197
Query: 190 ARSLFDEM-----------------PVRDLVSWNV----------------------MIT 210
+ +F +M V +L + + +I+
Sbjct: 198 SIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLIS 257
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
Y+K G+ K LF+++ + D++S+NAMISGY + A+ +F E+ + G+R + T
Sbjct: 258 LYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSST 317
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH---GNALIDMYAKCGSIERAIEVF 327
++ L+ L++ + + +++ + +L AL +Y + ++ A ++F
Sbjct: 318 LVGLIPVYLPFNHLQLSRLIQ----NLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
++ +++W+ +I G +G + +I++F+EM ++ P +T +L AC+ G +
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALS 432
Query: 388 EGKKYFKLMRDEYNIEPNI 406
GK L++ E +E N+
Sbjct: 433 IGKWVHGLIKSE-RLESNV 450
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 17/235 (7%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
+ +A ++F + E +N +I G Q+ A+ L+ +M + PN T + +L A
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSA 424
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C +L ++G VHG I E N +V +L+ +A CG + A LFD +VV W
Sbjct: 425 CAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTW 484
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV-- 228
+++ GY G A LF EM + V++ ++ + G + + NE+F+ +
Sbjct: 485 NAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMAN 544
Query: 229 -----PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
P + + M+ G ALE E M P +LL AC
Sbjct: 545 NYGFQPMSE--HYACMVDILGRAGQLTNALEFIERMPL---EPGPAVWGALLGAC 594
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 153/507 (30%), Positives = 246/507 (48%), Gaps = 83/507 (16%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F + E DT ++NT+I G +++ D++ ++ M + + T + VL A
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L +G + K G + +V LI ++ CG +LFD + D+++++++
Sbjct: 227 LQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM 286
Query: 178 TAGYARRGELSMARSLFDEM--------------------PVRDL--------VSWNVMI 209
+GY E A +LF E+ P L +S + I
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346
Query: 210 -----------TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
T Y + E++ A +LF+E P++ + SWNAMISGY G+ +A+ +F+E
Sbjct: 347 ILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQE 406
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M P+ VT+ S+L+ACA LG L +GK VH L+ + V AL+DMYAKCG
Sbjct: 407 MMP-QLSPNPVTVTSILSACAQLGALSIGKWVH-GLIKSERLESNVYVSTALVDMYAKCG 464
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
SI A ++F M D++V TW+ +I G HG +E++ +F EM + + PT +TF+ +L
Sbjct: 465 SIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILY 524
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------- 410
ACSH+G V EG + F M + Y +P HY
Sbjct: 525 ACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGP 584
Query: 411 -----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459
+H + E+ +A+KRL + + G YVLLSNIY++ + + VR+++
Sbjct: 585 AVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVV 644
Query: 460 DDSDIKKQPGCSLIEADDKAFLQYLFN 486
+ K PGC+LIE DD+ QY+F
Sbjct: 645 KKRKLAKTPGCTLIEIDDQ---QYVFT 668
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/439 (23%), Positives = 216/439 (49%), Gaps = 51/439 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L T L L QIQA + ++G + D S++ +L + GA+ + ++F K+++PD
Sbjct: 20 LLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHK--FFDLGAVAHVRQLFNKVSKPDL 77
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F++N +IRG + + P ++FLYT + K + ++P+ FT++F + A +RL +G +H
Sbjct: 78 FLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHA 137
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ G N FV ++++ + A +FD + D V W+++ +G++R
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFED 197
Query: 190 ARSLFDEM-----------------PVRDLVSWNV----------------------MIT 210
+ +F +M V +L + + +I+
Sbjct: 198 SIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLIS 257
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
Y+K G+ K LF+++ + D++S+NAMISGY + A+ +F E+ + G+R + T
Sbjct: 258 LYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSST 317
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH---GNALIDMYAKCGSIERAIEVF 327
++ L+ L++ + + +++ + +L AL +Y + ++ A ++F
Sbjct: 318 LVGLIPVYLPFNHLQLSRLIQ----NLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
++ +++W+ +I G +G + +I++F+EM ++ P +T +L AC+ G +
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALS 432
Query: 388 EGKKYFKLMRDEYNIEPNI 406
GK L++ E +E N+
Sbjct: 433 IGKWVHGLIKSE-RLESNV 450
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 17/235 (7%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
+ +A ++F + E +N +I G Q+ A+ L+ +M + PN T + +L A
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSA 424
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C +L ++G VHG I E N +V +L+ +A CG + A LFD +VV W
Sbjct: 425 CAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTW 484
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV-- 228
+++ GY G A LF EM + V++ ++ + G + + NE+F+ +
Sbjct: 485 NAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMAN 544
Query: 229 -----PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
P + + M+ G ALE E M P +LL AC
Sbjct: 545 NYGFQPMSE--HYACMVDILGRAGQLTNALEFIERMPL---EPGPAVWGALLGAC 594
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 148/503 (29%), Positives = 250/503 (49%), Gaps = 83/503 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A+++F ++ E D +N ++ G ++ DAV L +M + + T S VL
Sbjct: 116 GRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVL 175
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C L R + +H VK+G FV N+LI + G L A +F G A D+V
Sbjct: 176 PMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLV 235
Query: 173 AWSSLTAGYARRGELSMARSLFDEM----------------------------------- 197
W+S+ + + G+++ A LF M
Sbjct: 236 TWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYV 295
Query: 198 -----PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
V D+++ N M+ YAK +++ A ++F+ +P RDVVSWN +I+GY+ G+ +A
Sbjct: 296 RRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEA 355
Query: 253 LEMFEEMRS-VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNAL 310
+ ++ +M + G +P T +S+L A + LG L+ G ++H L + +G+ V L
Sbjct: 356 IRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHA--LSIKTGLNLDVYVTTCL 413
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
ID+YAKCG + A+ +F M R W+ +I GL HG +++++F +MQ+ +++P
Sbjct: 414 IDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDH 473
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
+TFV +L ACSHAG V++G+ +F LM+ Y I P +HY
Sbjct: 474 VTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQ 533
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+HG+VE+G++A++ L + + G YVL+SN+YA G+W+
Sbjct: 534 SMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDG 593
Query: 452 VEKVRKLMDDSDIKKQPGCSLIE 474
V+ VR L+ +++K PG S +E
Sbjct: 594 VDAVRSLVRRQNLQKTPGWSSME 616
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
++ Y + G + +A +F+E+P+RDV +WNAM+SG A+ + M G D
Sbjct: 108 LVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGD 167
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG--------NALIDMYAKCGS 319
VT+ S+L C LGD + +H V V HG NALID+Y K G
Sbjct: 168 AVTLSSVLPMCVVLGDRALALVMH---------VYAVKHGLSGELFVCNALIDVYGKLGM 218
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
+ A VF GM RD+ TW+++I G ++ +F M V P +T V + A
Sbjct: 219 LTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASA 278
Query: 380 CSHAGKVEEGKK 391
+ G E G K
Sbjct: 279 VAQCGD-ELGAK 289
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
RPD T L+ A ++H L + V +L+ Y + G + A
Sbjct: 66 RPDSFTFPPLVRAAPGPAS---AAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAY 122
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
VF M +RDV W+ ++ GL + A +++ + M V +T VL C
Sbjct: 123 RVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMC 178
>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 237/459 (51%), Gaps = 75/459 (16%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACT 116
AH +F ++ + D + +I+ Q++ P + ++ M ++P+ F ++ +LKAC
Sbjct: 56 AHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACA 115
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
L +G VH + V F + V++SL+ +A C
Sbjct: 116 SLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKC----------------------- 152
Query: 177 LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW 236
G S+ARS+FD + V+ VSW M++GYA+ G ++A ELF P R++ SW
Sbjct: 153 --------GLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSW 204
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
A+ISG V G MF EMR G + D + + S++ ACA+L L +GK++H L
Sbjct: 205 TALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHG--L 262
Query: 296 DMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
+ SG L NAL+DMYAKC I A VF M RDV +W+++I G A HG A+E+
Sbjct: 263 VIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEA 322
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--- 411
+ ++ +M +++P E+TFVG++ ACSHAG V +G+K FK M ++Y I P+++ +
Sbjct: 323 LDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLD 382
Query: 412 ------------------------------------HGDVELGRLANKRLLNMRKDESGD 435
HG+ E+G RLL++ E
Sbjct: 383 LLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPST 442
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
YVLLSN+YA G+W ++ +VRKLM D ++K++PG S I+
Sbjct: 443 YVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSID 481
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 34/224 (15%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE- 264
N ++ Y K ++ A+ LF+E+P+RD VSW ++++ Y + + L +F M +
Sbjct: 41 NTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRL 100
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG--SIER 322
+PD +LL ACA L L +GK+VH + ++ V + ++L+DMYAKCG SI R
Sbjct: 101 QPDHFVYATLLKACASLCSLRLGKQVHARFV-LSPFVDDDVVKSSLVDMYAKCGLPSIAR 159
Query: 323 -----------------------------AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
A+E+FL R++ +W+ LI GL G+ +
Sbjct: 160 SVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCID 219
Query: 354 SIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLM 396
MF EM+R V + + V+ AC++ + GK+ L+
Sbjct: 220 GCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLV 263
>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
Length = 567
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 146/460 (31%), Positives = 234/460 (50%), Gaps = 64/460 (13%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D +N+II G + LDA Y + + N T++ +L RL
Sbjct: 79 DVVSWNSIIAGCL-AHGDLDAASAYF---AGAPERNVATWNAMLAGLVRL---------- 124
Query: 129 GKIVKYGFEFNRFVRNSLIYFH------ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
G++V F+ +++ + A G++ A +FD ++V+W+++ +G
Sbjct: 125 GRVVDAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCV 184
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
G AR LF+ MP +++V+ MITG+ KQG+++ A LF+ + +DV+SWNAMI+G
Sbjct: 185 ENGMFVEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAG 244
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD--MTSG 300
YV G ++A+ + M G +PD T++++LTAC+ L L GK H + + SG
Sbjct: 245 YVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESG 304
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
++ NAL+ MY+KCG++ + VF+ +R +D+ +W+T+I A HG ++ IA+F E
Sbjct: 305 IS---FSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHE 361
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M+ + P +ITF+ VL AC H G V+ K F LM +Y I P HY
Sbjct: 362 MEVTGLIPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAG 421
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
+HG+V+LG LA K L+ SG YV+LSN
Sbjct: 422 QLEKASSYIKHMPLKAEKNVWGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPYVILSN 481
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFL 481
IYA+ G W +V ++R M + +KKQPG S E ++ +
Sbjct: 482 IYAAAGMWGQVNQIRGQMKERGVKKQPGYSWTEIGNEVHM 521
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 141/281 (50%), Gaps = 34/281 (12%)
Query: 140 RFVR-NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG--ELSMARSLFDE 196
R +R N I A GD+ A +FD DVV+W++L R G L AR LFDE
Sbjct: 14 RLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDE 73
Query: 197 -MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
MP RD+VSWN +I G G+++ A+ F P+R+V +WNAM++G V G A +
Sbjct: 74 AMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQRL 133
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD--------MTSGVAK---- 303
F+EM ER + V+ +++ A G++E ++V ++ D M SG +
Sbjct: 134 FDEM---PER-NVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMF 189
Query: 304 --------------VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
V+ A+I + K G ++ A +F G+R +DV +W+ +I G +G
Sbjct: 190 VEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNG 249
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
EE++ + M R V+P T + VL ACS + +GK
Sbjct: 250 HGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGK 290
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 145/337 (43%), Gaps = 48/337 (14%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F ++ E + Y T++ A+ A ++ M N +++ ++
Sbjct: 125 GRVVDAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPD----RNLVSWAAMI 180
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C N F ++ + E N ++I H GD+++A LFDG DV+
Sbjct: 181 SGCVE----NGMFVEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVI 236
Query: 173 AWSSLTAGYARRGE----LSMARSLFDEMPVRDLVSW----------------------- 205
+W+++ AGY G + + +F E D +
Sbjct: 237 SWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIA 296
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
N ++T Y+K G + ++ +F + +D+VSWN +I+ Y G ++ +
Sbjct: 297 IKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVI 356
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
+F EM G PDD+T LS+L+AC +G ++ K+ + + + H ++D+
Sbjct: 357 ALFHEMEVTGLIPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDI 416
Query: 314 YAKCGSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHG 349
++ G +E+A M + + + W +L+G HG
Sbjct: 417 LSRAGQLEKASSYIKHMPLKAEKNVWGSLLGACQIHG 453
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 150/332 (45%), Gaps = 30/332 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A ++F I D +N +I G + + +A+ L+ M + +KP+ T VL
Sbjct: 218 GDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVL 277
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC+ L G H +K E N+L+ ++ CG++ + ++F D+V
Sbjct: 278 TACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIV 337
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNEV 228
+W+++ A YA+ G+ +LF EM V L+ ++ +++ G ++ + +LF+ +
Sbjct: 338 SWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACGHVGMVDASLKLFDLM 397
Query: 229 PKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+ +S + ++ G ++A + M E+ SLL AC G+
Sbjct: 398 SSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEKN---VWGSLLGACQIHGN 454
Query: 284 LEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS----- 336
+++G+ L+ D S V+ L ++YA G + ++ M++R V
Sbjct: 455 VQLGELAAKMLVQSDSQSSGPYVI----LSNIYAAAGMWGQVNQIRGQMKERGVKKQPGY 510
Query: 337 TWSTL-------IGGLAFHGFAEESIAMFREM 361
+W+ + +GG A H + I+ R++
Sbjct: 511 SWTEIGNEVHMFVGGDASHPEMRKIISELRKI 542
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 35/237 (14%)
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK--QALE 254
+ R L+ N I+ A+ G++ A +F+ + RDVVSWNA+++ G + A
Sbjct: 10 LAARRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARR 69
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVG--------KKVHCTLLDMTSGVAK--- 303
+F+E ++ R D V+ S++ C GDL+ ++ T M +G+ +
Sbjct: 70 LFDE--AMPSR-DVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGR 126
Query: 304 ---------------VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
V+ ++D A+ G +ERA EVF M DR++ +W+ +I G +
Sbjct: 127 VVDAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVEN 186
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
G E+ +F M V + ++ G V+ ++ F +R + I N
Sbjct: 187 GMFVEARELFEAMPEKNV----VACTAMITGHCKQGDVDSARRLFDGIRAKDVISWN 239
>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
Length = 583
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/499 (29%), Positives = 252/499 (50%), Gaps = 85/499 (17%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A ++F +++E + ++ +I G Q P+ A+ L++++ +I PN++ ++ V+ AC
Sbjct: 57 ARQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSKL---NIVPNEYVYASVISACAS 113
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L G +HG+ +K+G + FV N+LI + CG + A + ++ +++ VA+++L
Sbjct: 114 LKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNAL 173
Query: 178 TAGYA----------------------------------------RRGELSMARSLFDEM 197
G+ +RGEL +++ ++
Sbjct: 174 ITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKL 233
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
+ N++IT Y+K +E+A + F + ++D++SWN IS C +++ALE F+
Sbjct: 234 NSTAFIG-NLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFK 292
Query: 258 EM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
EM RPD+ T S L AC+ L + GK++H L+ T V GNALI+MYAK
Sbjct: 293 EMLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIR-TRLYQDVGAGNALINMYAK 351
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CG I +A +F M +++ +W+T+I G HGF ++ +F +M+ + V+P +TFVG+
Sbjct: 352 CGCIAKAYYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGL 411
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------- 410
L A +HAG V+EG YF M + Y I P I H+
Sbjct: 412 LTASNHAGLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGH 471
Query: 411 -------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
+HGDV+ G+ ++LL ++ + YVLLSN+YAS W+ V + K
Sbjct: 472 DTVVLGSLLSACRLHGDVDTGKCFARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWK 531
Query: 458 LMDDSDIKKQPGCSLIEAD 476
L+ S +KK+PG SLIE +
Sbjct: 532 LLKGSGLKKEPGHSLIEVN 550
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 144/318 (45%), Gaps = 38/318 (11%)
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
++ C++ G +H +K + V N ++ +A C L A +FD ++ +
Sbjct: 9 LIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERN 68
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPV------------------------------- 199
+V+WS++ +GY + GE A LF ++ +
Sbjct: 69 LVSWSAMISGYEQIGEPISALGLFSKLNIVPNEYVYASVISACASLKGLVQGKQIHGQAL 128
Query: 200 ---RDLVSW--NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
D VS+ N +IT Y K G+ A +NE + + V++NA+I+G+V + E
Sbjct: 129 KFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVENQQPDKGFE 188
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314
+ M G PD T + LL C DL+ G+ +HC + + + GN +I MY
Sbjct: 189 VLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFI-GNLIITMY 247
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEITF 373
+K +E A + F + ++D+ +W+T I + E+++ F+EM +VRP E TF
Sbjct: 248 SKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTF 307
Query: 374 VGVLVACSHAGKVEEGKK 391
L ACS + GK+
Sbjct: 308 ASALAACSGLASMCNGKQ 325
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
SL+ C+ L G +H + T+ + V+ N ++++YAKC + A +VF M +
Sbjct: 8 SLIHQCSKTKALRQGLPLHAIAIK-TATRSDVIVSNHILNLYAKCRKLREARQVFDEMSE 66
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
R++ +WS +I G G E I+ +L + P E + V+ AC+ + +GK+
Sbjct: 67 RNLVSWSAMISGYEQIG---EPISALGLFSKLNIVPNEYVYASVISACASLKGLVQGKQ 122
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 231/462 (50%), Gaps = 73/462 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A K+F ++ ++N +IR + A+ L +ME+ + P+K T +
Sbjct: 95 GRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEMERSGLTPDKVTLVTSV 154
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C+R ++G +H + F F+ V N+L+ D+
Sbjct: 155 TVCSRAGDLSLGRRIHAYMDGV-FGFSLPVANALL-------DM---------------- 190
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
Y + G L A LF++MP R+++SW ++++GYA G+++KA LF + ++D
Sbjct: 191 --------YMKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKD 242
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
++ W AMI+ V G ++AL +F EM+ PD T+++LLT CA+LG L+ G+ +H
Sbjct: 243 LIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQ 302
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+D V VL G ALIDMYAKCG +++++EVF M+ RD + W+++I GLA +G A
Sbjct: 303 FAVDRKMKVDAVL-GTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAG 361
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
++ +F +M+R KV+P ITF+GVL AC H G V+EG+K F M+D Y I P I HY
Sbjct: 362 RALELFEDMERSKVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCL 421
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
G+VE+ KR+
Sbjct: 422 VNLLGRAGLLDEAEKLIRDIQINKDAMPLFGALLTACKAQGNVEMSERLTKRIGEQGYQI 481
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+L+SN+YA+ W +VR M IKK GCSLIE
Sbjct: 482 PDVNLLMSNVYATASRWEDAIRVRSKMAHPTIKKTAGCSLIE 523
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 33/210 (15%)
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
Y G + A +LF+E+P R +V WN MI YV CG A+ + EEM G PD VT+
Sbjct: 91 YTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEMERSGLTPDKVTL 150
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
++ +T C+ GDL +G+++H +D G + + NAL+DMY K G +E A+++F M
Sbjct: 151 VTSVTVCSRAGDLSLGRRIH-AYMDGVFGFSLPV-ANALLDMYMKNGCLEEAVKLFEQMP 208
Query: 332 DRDVSTWSTLIGGLAF-------------------------------HGFAEESIAMFRE 360
R++ +W+ L+ G AF HG EE++++FRE
Sbjct: 209 SRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINACVQHGCFEEALSLFRE 268
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
MQ +V P T V +L C++ G +++G+
Sbjct: 269 MQMQRVEPDRFTIVTLLTCCANLGALDQGE 298
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 4/176 (2%)
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
A + +P RD N +I G + + ++ ++R G D T +L A
Sbjct: 2 ATACHHGMPLRDC---NLLIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGV 58
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
L G+K H + T ++L+DMY G + A ++F M R + W+
Sbjct: 59 LKLSVEGRKAHAAAMK-TGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNM 117
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+I G +IA+ EM+R + P ++T V + CS AG + G++ M
Sbjct: 118 MIRCYVRCGRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYM 173
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 193/358 (53%), Gaps = 43/358 (12%)
Query: 160 SVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
SV+ D +SL Y G ++ ARS+FD+ +D+ WNVMI+GY K G +
Sbjct: 93 SVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGYVKSGNLA 152
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDDVTMLSLLTAC 278
A ELF+ +P R+VVSW +I Y +A+E+F M+ G PD V +LS+L+AC
Sbjct: 153 CARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALLSVLSAC 212
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
DLG +++G+ VH ++ G+ ++ NA+IDMY K G + +A+EVF GM + V T
Sbjct: 213 GDLGAVDLGEWVHRFVV--RRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQKSVVT 270
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+T+I G A HG E+I MFR M+ V P ++TF+ +L ACSH G + G+ YFK+M
Sbjct: 271 WTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSHVGLTDLGRWYFKIMV 330
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
+Y I+ + HYG HGD ELG
Sbjct: 331 SQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFKANAAIWGALLAAARTHGDAELG 390
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ A L+ + SG+Y+LLSNIYA + W+ V K+RK M D ++ PG S IE D
Sbjct: 391 KQALLHLIELEPHNSGNYILLSNIYAEQERWDDVSKLRKQMKDRGLRNVPGASSIEVD 448
>gi|296087990|emb|CBI35273.3| unnamed protein product [Vitis vinifera]
Length = 405
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 230/445 (51%), Gaps = 83/445 (18%)
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
M+NTII S+++ LD+V Y M P+ FTF F++K+ + +G +H +
Sbjct: 1 MFNTIIMASSRT---LDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHV 57
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM-DVVAWSSLTAGYARRGELSMA 190
VK+G + + FV N++I +++ +L +A +FD + DVV+W++L G++ G++ A
Sbjct: 58 VKFGLDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEA 117
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +FD MP+++ VSWN MI+GYA + +A +LF+E+P RD SW+AM+SGY GM
Sbjct: 118 RKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCN 177
Query: 251 QALEMFEEMRSVGER--PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
+AL++F EM + G++ P++ ++S ++ACA L LE G+ +H
Sbjct: 178 EALDLFMEMVT-GDKMIPNEAALVSAVSACAQLRALEEGRWLHS---------------- 220
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
Y K E+ + + + + GLA +G +E++A+F +MQ + P
Sbjct: 221 -----YIK----EKKLRI------------NVTLAGLALNGCGKEALALFWKMQFVGPSP 259
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
ITF+ +L CSH+G + EG+ F +M Y I+P ++HYG
Sbjct: 260 NAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDF 319
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+HG VELG KRL+++ G Y LL NI+A+ W
Sbjct: 320 VEKMPMKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRW 379
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIE 474
+ V VR L + K PG S++E
Sbjct: 380 DDVAMVRDLEKGRKVLKNPGNSIVE 404
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 153/540 (28%), Positives = 250/540 (46%), Gaps = 112/540 (20%)
Query: 17 NLRTLKQIQALV-TINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT 75
+++TLK++ ++ +N + S ++ + + PG K+F ++++ + YN
Sbjct: 33 DIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPG---LTRKVFDEMSDRNVVFYNV 89
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+IR + D + ++ +M +P+ +T+ VLKAC+ G +HG ++K G
Sbjct: 90 MIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVG 149
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
+FN FV N LI + CG LF+ AR +FD
Sbjct: 150 LDFNLFVGNGLIAMYGKCG------CLFE-------------------------ARRVFD 178
Query: 196 EMPVRDLVSWNVMITGYAKQGEMEKANEL------------------------------- 224
EM +D+VSWN M+ GYA + A E+
Sbjct: 179 EMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENV 238
Query: 225 ------FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
F + +++++SWN MI Y+ + QA++++ +M PD +T S+L AC
Sbjct: 239 LYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPAC 298
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
DL L +G+++H ++ +L N+LIDMYA+CG ++ A VF M+ RDV++W
Sbjct: 299 GDLSALLLGRRIH-EYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASW 357
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
++LI G ++A+F EM P I FV +L ACSH+G ++EG+ YFK M D
Sbjct: 358 TSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTD 417
Query: 399 EYNIEPNIRHYG---------------------------------------VHGDVELGR 419
+Y I P I HY V ++++G
Sbjct: 418 DYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGI 477
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
LA LL + ++SG YVLLSNIYA G W V ++R +M I+K PG S +E +++
Sbjct: 478 LAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQV 537
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/493 (29%), Positives = 234/493 (47%), Gaps = 90/493 (18%)
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
E + F +N II G + P + Y +M + P+KFTF +KAC +L
Sbjct: 101 EINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIKK--- 157
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+HG + K+G E + F+ ++L+ + G + A V F+ DVV W+++ GYA+ G+
Sbjct: 158 IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQ 217
Query: 187 LSMARSLFDEMPVRDLVSWNVMITG----------------------------------- 211
M F M +V +TG
Sbjct: 218 FEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNS 277
Query: 212 ----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
Y K +E A E+F + ++D+ SWN+++S + CG + L + + M G +PD
Sbjct: 278 LIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPD 337
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-------VLHGNALIDMYAKCGSI 320
VT+ ++L AC+ L L G+++H ++ SG+ K VL NA+IDMYAKCGS+
Sbjct: 338 LVTVTTVLPACSHLAALMHGREIHGYMI--VSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A VF M ++DV++W+ +I G HG+ E++ MF M ++++P E+TFVGVL AC
Sbjct: 396 RDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSAC 455
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
SHAG V +G+ + M+ +Y++ P I HY
Sbjct: 456 SHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVV 515
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+H L +A +R+ + + G YVL+SN+Y + G + V +VR M
Sbjct: 516 WRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQ 575
Query: 462 SDIKKQPGCSLIE 474
+++K PGCS IE
Sbjct: 576 QNVRKTPGCSWIE 588
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 163/390 (41%), Gaps = 58/390 (14%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITE 67
K C ++ +K+I L+ G D ++ GS ++ G + +A F ++
Sbjct: 147 KACLDVLEIKKIHGLLFKFGLELD-------VFIGSALVNCYLKFGLMEHAQVAFEELPI 199
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
D ++N ++ G AQ + + +M S+ P++FT + L + N G +
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRII 259
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG +K G++ V NSLI + C + A +F+ + D+ +W+S+ + + + G+
Sbjct: 260 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH 319
Query: 188 SMARSLFDEM---------------------------------------------PVRDL 202
L D M + D+
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 379
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
+ N +I YAK G M A+ +F + +DV SWN MI GY + G +ALEMF M V
Sbjct: 380 LLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 439
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
+PD+VT + +L+AC+ G + G+ + + H +IDM + G ++
Sbjct: 440 QLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDE 499
Query: 323 AIEVFLGMR-DRDVSTWSTLIGGLAFHGFA 351
A E+ L M + + W L+ H A
Sbjct: 500 AYELALTMPIEANPVVWRALLAACRLHKHA 529
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 11/177 (6%)
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
K GE + +E+ +V ++NA+ISG++ G ++ E +++MR+ G PD T
Sbjct: 92 KAGENDPTHEI-------NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPC 144
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
+ AC D+ LE+ KK+H L + V G+AL++ Y K G +E A F + R
Sbjct: 145 AIKACLDV--LEI-KKIHGLLFKFGLEL-DVFIGSALVNCYLKFGLMEHAQVAFEELPIR 200
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
DV W+ ++ G A G E + FR M V P+ T G L + G + G+
Sbjct: 201 DVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGR 257
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 162/553 (29%), Positives = 262/553 (47%), Gaps = 89/553 (16%)
Query: 9 SRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
S + + C L +++ + A + I GF S + L+ + + I ++K+F +
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKL--QEIEDSYKVFNTM 232
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
TE + +N +I G + LDA L+ +M + P+ TF V KA L N
Sbjct: 233 TEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAK 292
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD---AKMDVVAWSSLTAGYA 182
V G ++ G + N V +LI ++ CG L A +F+ + + W+++ +GY
Sbjct: 293 EVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNA-PWNAMISGYL 351
Query: 183 RRGELSMARSLFDEMPVRDL------------------------------------VSW- 205
R G A LF +M D+ V++
Sbjct: 352 RSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYV 411
Query: 206 ---NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
N + YAK G +E ++FN + RD++SW ++++ Y C +A+E+F MR+
Sbjct: 412 SISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAE 471
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G P+ T S+L +CA+L LE G++VH + + + K + +AL+DMYAKCG +
Sbjct: 472 GIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIE-SALVDMYAKCGCLGD 530
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A +VF + + D +W+ +I G A HG ++++ +FR M +L V P +TF+ VL ACSH
Sbjct: 531 AKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSH 590
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
G VEEG +YFKLM+ Y + P + HY
Sbjct: 591 GGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQ 650
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
VHG+VELG LA +++L+ + + S YVLLSN Y G + +R LM +
Sbjct: 651 TLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQG 710
Query: 464 IKKQPGCSLIEAD 476
+KK+PGCS I +
Sbjct: 711 VKKEPGCSWISVN 723
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/429 (28%), Positives = 208/429 (48%), Gaps = 52/429 (12%)
Query: 11 LWKKCTNLRTLKQIQALVTINGF--NSDSSALRELIYSGSVVIPGA----INYAHKMFVK 64
L + C + R LKQ + T++GF S S L+ V + I+ A ++F +
Sbjct: 74 LLRDCVDARFLKQAK---TVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+++ +TF + +I G A++ LD + +M+ I P++F +S +L+ C L +G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
VH +IV GF + FV +L+ +A ++ + +F+ +++VV+W+++ G+
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250
Query: 185 GELSMARSLFDEM------P--------------VRDLVSWNVMITGYA----------- 213
A LF M P +RD V+ ++GYA
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRD-VNKAKEVSGYALELGVDSNTLV 309
Query: 214 ---------KQGEMEKANELFNE--VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
K G +++A +FN + R WNAMISGY+ G N++ALE+F +M
Sbjct: 310 GTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQN 369
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
D T S+ A A L L +GKKVH + V V NA+ + YAKCGS+E
Sbjct: 370 DIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLED 429
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
+VF M DRD+ +W++L+ + +++I +F M+ + P + TF VLV+C++
Sbjct: 430 VRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCAN 489
Query: 383 AGKVEEGKK 391
+E G++
Sbjct: 490 LCLLEYGQQ 498
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 157/518 (30%), Positives = 244/518 (47%), Gaps = 87/518 (16%)
Query: 1 NRTNRHRS-SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAH 59
N NR R L + C + + I A + N + D + EL+ S + +I YA
Sbjct: 27 NTPNRRRHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNL--NSIGYAS 84
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
K+F P+ ++Y +I G S D + LY QM S+ P+ + + VLKAC L
Sbjct: 85 KIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHL 144
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
G VH +++K G NR +R LI + CG A +FD + DVVA + +
Sbjct: 145 ALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMIN 204
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
Y G ++D V W MI G + GE +A E+F + + DV+
Sbjct: 205 YYFDHG-------------IKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVM----- 246
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
P++VT++ +L+AC++LG L++G+ V + +D
Sbjct: 247 --------------------------PNEVTIVCVLSACSELGALQLGRWVR-SYMDKHR 279
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
G ALI+MY++CG I+ A VF M++++V T++++I G A HG + E++ +FR
Sbjct: 280 IELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFR 339
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
+ + P+ +TFVGVL ACSH G E G + F M +Y IEP I HYG
Sbjct: 340 GLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRL 399
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
+HG++EL K L+ + +SG Y+LLS
Sbjct: 400 GRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLS 459
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
N Y+S G+W +VR M + I+K+PGCS IE +++
Sbjct: 460 NAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNE 497
>gi|224057531|ref|XP_002299253.1| predicted protein [Populus trichocarpa]
gi|222846511|gb|EEE84058.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 154/519 (29%), Positives = 265/519 (51%), Gaps = 52/519 (10%)
Query: 11 LWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITE 67
L K+C +TL KQ+ A + G + +L + G G + A +F +I
Sbjct: 30 LLKQCLKFKTLRGGKQVHAWLVTRGTDLRILSLNSKLV-GMYASCGDVKSATLVFKRIRN 88
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P+ F N ++ SA +A+ + M+ NK+TFS VLKA LL N G V
Sbjct: 89 PNVFALNWMVLASAFEGYYKEAIGYFCSMKDSVFIYNKYTFSIVLKAFVGLLDLNKGKEV 148
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H + + GFE + V N+L+ ++ CG + A +FD AK D+V+W+S+ +GY G++
Sbjct: 149 HSMVKQLGFESDVCVANALVDMYSKCGCIGYARTVFDRMAKRDIVSWTSMISGYCNVGKI 208
Query: 188 SMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVPKR----DVVSWNAM 239
A LF+ M + L +WN +I+GYA++G+ + A L +++ + D+V+WNAM
Sbjct: 209 EEALVLFERMKLEGLEPNDFTWNALISGYARRGDSDGAFSLLSKMTREGLVPDLVTWNAM 268
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
I+G+V A ++F++M +G +P+ VT+ LL AC + ++ G+ +H + +
Sbjct: 269 IAGFVQGERAGDAFKLFQDMLVLGVKPNLVTVAGLLPACGMVSSIQRGRAIHGLVYRLEF 328
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
++ +ALIDMY++CGS + A VF + +++V++W+ +IG HG SI +F
Sbjct: 329 DISNAFIASALIDMYSECGSFKEARTVFEKIHNKNVASWNAMIGCYGKHGMVNTSIQLFE 388
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV--EL 417
M ++ ++T + VL ACSH+G VE+G + F M++ Y ++ HY D+
Sbjct: 389 RMHGEGIQANDVTLLCVLSACSHSGYVEKGLEIFWSMKERYMVDRKKEHYACVVDMLSRS 448
Query: 418 GRLA----------------------NKRLLNMRKD---------------ESGDYVLLS 440
GRL N +++ R+D + G + +LS
Sbjct: 449 GRLVDAYELVKEMPIEVTKSIAGAFFNGCMIHGRRDLAEKMIDDVTRGDLKKPGSFAMLS 508
Query: 441 NIYASRGEWNRVEK-VRKLMDDSDIKKQPGCSLIEADDK 478
IYA+ GE V ++K++ + +K+P CS +E D+
Sbjct: 509 AIYATSGERKEVRNTMKKIVKERKAQKEPACSQVEEKDE 547
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 200/311 (64%), Gaps = 3/311 (0%)
Query: 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
M + I P+ +TFS ++KAC G VHG + ++G E + FV+ +L+ F++ G
Sbjct: 1 MLRSKILPSSYTFSSLIKACGLASEVKFGEVVHGHVWRHGLESHVFVQTALVDFYSTVGR 60
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQ 215
+ + +FD + D+ AW+++ AR G++S AR LFD MP ++ +WN +I GY+K
Sbjct: 61 IIESKKVFDEMPERDIFAWATMVTSLARIGDMSSARRLFDMMPEKNTAAWNTLIYGYSKL 120
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
++E A LF+++ +RD++SW M++ Y +AL +F +M G PD+VTM +++
Sbjct: 121 RDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVFNQMIKTGICPDEVTMATVI 180
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD 334
+ACA LG L++GK++H L M +G V G++LIDMYAKCGS++R++ VF +++++
Sbjct: 181 SACAHLGALDLGKEIH--LYVMQNGFDLDVYIGSSLIDMYAKCGSLDRSLLVFFKLQEKN 238
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK 394
+ W+++I GLA HG+A+E++ MFR+M R K++P +TF+ VL AC+HAG VEEG K
Sbjct: 239 LFCWNSVIEGLAAHGYAKEALEMFRKMGREKIKPNGVTFISVLNACAHAGLVEEGLALRK 298
Query: 395 LMRDEYNIEPN 405
+ +PN
Sbjct: 299 KAPERGIAKPN 309
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 105/206 (50%), Gaps = 6/206 (2%)
Query: 36 DSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQ 95
+++A LIY S + + A +F ++ E D + T++ AQ++ +A+ ++ Q
Sbjct: 106 NTAAWNTLIYGYSKLRD--LESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVFNQ 163
Query: 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
M K I P++ T + V+ AC L ++G +H +++ GF+ + ++ +SLI +A CG
Sbjct: 164 MIKTGICPDEVTMATVISACAHLGALDLGKEIHLYVMQNGFDLDVYIGSSLIDMYAKCGS 223
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITG 211
L+ + ++F + ++ W+S+ G A G A +F +M + V++ ++
Sbjct: 224 LDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMGREKIKPNGVTFISVLNA 283
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWN 237
A G +E+ L + P+R + N
Sbjct: 284 CAHAGLVEEGLALRKKAPERGIAKPN 309
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/470 (30%), Positives = 241/470 (51%), Gaps = 46/470 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+I F ++ D+ YNT I G + + P +++ L+ +M++ +P ++T +L
Sbjct: 103 GSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSIL 162
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A +LL G +HG I+ F N F+ N+L +A CG++ A LFD K ++V
Sbjct: 163 NASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLV 222
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+ + +GYA+ G+ L +M + D V+ + +I Y + G +++A +F+E
Sbjct: 223 SWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEF 282
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
++D+V W AM+ GY G + AL +F EM PD T+ S++++CA L L G+
Sbjct: 283 KEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQ 342
Query: 289 KVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
VH + +G+ +L +ALIDMY+KCG I+ A VF M R+V +W+ +I G A
Sbjct: 343 AVHGK--SILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQ 400
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
+G ++++ +F M + K +P +TF+G+L AC H +E+G++YF + +++ + P +
Sbjct: 401 NGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLD 460
Query: 408 HYG---------------------------------------VHGDVELGRLANKRLLNM 428
HY GD+ +A + L +
Sbjct: 461 HYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFEL 520
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ Y++LSN+YAS G W V VR LM ++KK G S IE D++
Sbjct: 521 DPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNE 570
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 132/219 (60%), Gaps = 1/219 (0%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+ G+L A++LFD+M RD SWN +++ YAK G ++ F+ +P RD VS+N I
Sbjct: 68 YAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTI 127
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+G+ +++LE+F+ M+ G P + T++S+L A A L DL GK++H +++ + +
Sbjct: 128 AGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSII-VRNF 186
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ V NAL DMYAKCG IE+A +F + +++ +W+ +I G A +G E+ I + +
Sbjct: 187 LGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQ 246
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
M+ P ++T ++ A G+V+E ++ F +++
Sbjct: 247 MRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK 285
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/514 (28%), Positives = 245/514 (47%), Gaps = 80/514 (15%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F + P YN II G A+ L A+ ++ +++ + ++ + S L AC+
Sbjct: 293 AWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSV 352
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+ G +HG VK G FN V N+++ + CG L A +FD + D V+W+++
Sbjct: 353 IKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAI 412
Query: 178 TAGYARRGELSMARSLFDEMPVRDL----------------------------------- 202
A + + E+ SLF M +
Sbjct: 413 IAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGM 472
Query: 203 -VSWNV---MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
+ W V ++ Y K G + +A ++ + + ++ VSWN++ISG+ ++ A F +
Sbjct: 473 GLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQ 532
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M +G PD+ T ++L CA++ +E+GK++H +L + + V + L+DMY+KCG
Sbjct: 533 MLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLH-SDVYIASTLVDMYSKCG 591
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
+++ + +F RD TWS +I A+HG E++I +F EMQ L V+P F+ VL
Sbjct: 592 NMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLR 651
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------- 410
AC+H G V++G YF++M+ Y ++P++ HY
Sbjct: 652 ACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADD 711
Query: 411 -----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459
+ G+VE+ A LL + +S YVLL+N+YA+ G W V K+R +M
Sbjct: 712 VIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIM 771
Query: 460 DDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
+ +KK+PGCS IE D+ +L K P S
Sbjct: 772 KNCKLKKEPGCSWIEVRDEVH-TFLVGDKAHPRS 804
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 147/277 (53%), Gaps = 32/277 (11%)
Query: 105 KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD 164
KFTFS +L+ C+ L N G H +++ F +V N L+ F
Sbjct: 6 KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQF--------------- 50
Query: 165 GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANEL 224
Y + ++ A +FD MP RD++SWN MI GYA+ G M A L
Sbjct: 51 ----------------YCKSSNMNYAFKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSL 94
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F+ +P+RDVVSWN+++S Y+ G+N++++E+F MRS+ D T +L AC+ + D
Sbjct: 95 FDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDY 154
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
+G +VHC + M V+ G+AL+DMY+KC ++ A +F M +R++ WS +I G
Sbjct: 155 GLGLQVHCLAIQM-GFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAG 213
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
+ E + +F++M ++ + ++ T+ V +C+
Sbjct: 214 YVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCA 250
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 159/352 (45%), Gaps = 40/352 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
GA+ A +F + D +N II Q++ + + L+ M + +++P+ FT+ V+
Sbjct: 389 GALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVV 448
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC N G +HG+IVK G + FV ++L+ + CG L A + D + V
Sbjct: 449 KACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTV 508
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWN-------------------------- 206
+W+S+ +G++ + + A+ F +M ++ N
Sbjct: 509 SWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQI 568
Query: 207 -------------VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
++ Y+K G M+ + +F + PKRD V+W+AMI Y G +QA+
Sbjct: 569 LKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAI 628
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
++FEEM+ + +P+ +S+L ACA +G ++ G + + H + ++D+
Sbjct: 629 KLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDL 688
Query: 314 YAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
+ + A+++ M + D W TL+ G E + F + +L
Sbjct: 689 LGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQL 740
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 112/460 (24%), Positives = 198/460 (43%), Gaps = 88/460 (19%)
Query: 1 NRTNRHRSSRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVI-----P 52
N T + S + +KC+NL+ L KQ A + + F IY + ++
Sbjct: 2 NPTKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSF-------VPTIYVANCLVQFYCKS 54
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQ--------------------SQNPLDAVFL 92
+NYA K+F ++ D +NT+I G A+ S N L + +L
Sbjct: 55 SNMNYAFKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYL 114
Query: 93 YTQMEKCSIK----------PNKF-TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
+ + + SI+ P+ + TFS VLKAC+ + +G VH ++ GFE +
Sbjct: 115 HNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVV 174
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP--- 198
++L+ ++ C L+ A +F + ++V WS++ AGY + LF +M
Sbjct: 175 TGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVG 234
Query: 199 ------------------------------------VRDLVSWNVMITGYAKQGEMEKAN 222
D + + YAK M A
Sbjct: 235 MGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAW 294
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL- 281
++FN +P S+NA+I GY +ALE+F+ ++ D++++ LTAC+ +
Sbjct: 295 KVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIK 354
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
G LE G ++H + G + N ++DMY KCG++ A +F M RD +W+ +
Sbjct: 355 GHLE-GIQLHGLAVKCGLGF-NICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAI 412
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
I + +++++F M R + P + T+ V+ AC+
Sbjct: 413 IAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA 452
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 132/277 (47%), Gaps = 18/277 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A K+ ++ E T +N+II G + + +A ++QM + + P+ FT++ VL
Sbjct: 490 GMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVL 549
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C + +G +H +I+K + ++ ++L+ ++ CG++ + ++F+ K D V
Sbjct: 550 DVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYV 609
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVM----ITGYAKQGEMEKANELFNEV 228
WS++ YA G A LF+EM + ++ + + + A G ++K F +
Sbjct: 610 TWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIM 669
Query: 229 PKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+ ++ M+ L G + Q E + + S+ DDV +LL+ C G+
Sbjct: 670 QSHYGLDPHMEHYSCMVD---LLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGN 726
Query: 284 LEVGKKVHCTL--LDMTSGVAKVLHGNALIDMYAKCG 318
+EV +K +L LD A VL L ++YA G
Sbjct: 727 VEVAEKAFNSLLQLDPQDSSAYVL----LANVYANVG 759
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/465 (29%), Positives = 234/465 (50%), Gaps = 70/465 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G +NYA ++F ++ E + + +N++I G Q+ +A+ L+ QM+ IKP+ F+ S +L
Sbjct: 528 GRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSML 587
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+C L G +H IV+ E ++ L+ +A CG ++
Sbjct: 588 SSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMD--------------Y 633
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
AW ++D+ +D++ NVM++ + G A LF+++ +R+
Sbjct: 634 AWK-----------------VYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRN 676
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
WN++++GY G+ K++ F EM D +TM++++ C+ L LE G ++H
Sbjct: 677 TALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHS 736
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
++ V+ AL+DMY+KCG+I +A VF M +++ +W+ +I G + HG ++
Sbjct: 737 LIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSK 796
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
E++ ++ EM + + P E+TF+ +L ACSH G VEEG + F M+++YNIE HY
Sbjct: 797 EALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCM 856
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
VH D+++GRLA +RL +
Sbjct: 857 VDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNP 916
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G YV++SNIYA+ G W VE +R++M +KK PG S IE + +
Sbjct: 917 GPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSE 961
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 210/417 (50%), Gaps = 55/417 (13%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINY-----AHKMFVKITEPDTFMYNT 75
++Q+Q+ V G N + ++ G ++ G + A +I +N
Sbjct: 194 VRQLQSSVVKAGLNCN-------LFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNA 246
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+I G + + +A ++ +M K + P+ FTF+ L+ C L R+ G VH K++ G
Sbjct: 247 VIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACG 306
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
F+ + FV N+LI +A C D + +FD + + V W+S+ + A+ G + A LF
Sbjct: 307 FKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFL 366
Query: 196 EMP----------------------------------VRDLVSWNVMITG-----YAKQG 216
M VR+L++ ++++ Y+K G
Sbjct: 367 RMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCG 426
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV-GERPDDVTMLSLL 275
+E+A+++F + +R+ VS+NA+++GYV G ++ALE++ +M+S G +PD T +LL
Sbjct: 427 MVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLL 486
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRD 334
T CA+ + G+++H L+ + + K ++ L+ MY++CG + A E+F M +R+
Sbjct: 487 TLCANQRNDNQGRQIHAHLI--RANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERN 544
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+W+++I G +G +E++ +F++MQ ++P + +L +C ++G++
Sbjct: 545 AYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRE 601
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 139/514 (27%), Positives = 239/514 (46%), Gaps = 60/514 (11%)
Query: 9 SRLWKKCTNLRTL---KQIQALVTINGFNSDSSALRE--LIYSGSVVIPGAINYAHKMFV 63
S L + C + + K I + NG+N D+ + + ++Y+ S + + YA K+F
Sbjct: 75 SSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDD-LCYARKLFE 133
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
++ E + +NT+I A+ + ++ + LY +M +KFTF V+KAC + +M
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAM--EDM 191
Query: 124 GFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
G + +VK G N FV +L+ +A G ++ A D VV W+++ AGY
Sbjct: 192 GGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGY 251
Query: 182 ARRGELSMARSLFDEM--------------PVR-------------------------DL 202
+ A +FD M +R D
Sbjct: 252 VKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDT 311
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
N +I YAK + E ++F+E+ +R+ V+WN++IS G AL +F M+
Sbjct: 312 FVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQES 371
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G + + + S+L A A L D+ G+++H L+ + ++ G+AL+DMY+KCG +E
Sbjct: 372 GYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLN-SDIILGSALVDMYSKCGMVEE 430
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACS 381
A +VF + +R+ +++ L+ G G AEE++ ++ +MQ ++P + TF +L C+
Sbjct: 431 AHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCA 490
Query: 382 HAGKVEEGKK-YFKLMRDEYNIEPNI--RHYGVHGDVELGRLANKRLLNMRKDESGDYVL 438
+ +G++ + L+R NI NI VH E GRL + + R E Y
Sbjct: 491 NQRNDNQGRQIHAHLIRA--NITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSW 548
Query: 439 LSNI--YASRGEWNRVEKVRKLMDDSDIKKQPGC 470
S I Y GE ++ K M + IK P C
Sbjct: 549 NSMIEGYQQNGETQEALRLFKQMQLNGIK--PDC 580
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 188/411 (45%), Gaps = 78/411 (18%)
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
K+F ++ E + +N+II AQ + DA+ L+ +M++ K N+F +L A L
Sbjct: 332 KVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLA 391
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
G +HG +V+ + + ++L+ ++ CG + A +F + + V++++L A
Sbjct: 392 DIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLA 451
Query: 180 GYARRGELSMARSLFDEMPVRD-------------------------------LVSWNV- 207
GY + G+ A L+ +M D L+ N+
Sbjct: 452 GYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANIT 511
Query: 208 --------MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
++ Y++ G + A E+FN + +R+ SWN+MI GY G ++AL +F++M
Sbjct: 512 KNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM 571
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT---SGVAKVLHGNALIDMYAK 316
+ G +PD ++ S+L++C L D + G+++H ++ T G+ +V+ L+DMYAK
Sbjct: 572 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVV----LVDMYAK 627
Query: 317 CGSIERAIEV-------------------------------FLGMRDRDVSTWSTLIGGL 345
CGS++ A +V F M R+ + W++++ G
Sbjct: 628 CGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGY 687
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
A G +ES F EM + +T V ++ CS +E G + L+
Sbjct: 688 ANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLI 738
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 145/330 (43%), Gaps = 43/330 (13%)
Query: 104 NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCG---DLNTAS 160
N +S +++ C G +H +++ G+ + ++ ++ +A G DL A
Sbjct: 70 NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM----------------------- 197
LF+ + ++ AW+++ YAR + L+ M
Sbjct: 130 KLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAME 189
Query: 198 ---PVRDLVSWNV-------------MITGYAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
VR L S V ++ GYA+ G M+ A +E+ VV+WNA+I+
Sbjct: 190 DMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIA 249
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
GYV ++A +F+ M +G PD+ T S L C L + GK+VH L+
Sbjct: 250 GYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLI-ACGFK 308
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
GNALIDMYAKC E ++VF M +R+ TW+++I A G +++ +F M
Sbjct: 309 GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRM 368
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
Q + +L+A + + +G++
Sbjct: 369 QESGYKSNRFNLGSILMASAGLADIGKGRE 398
>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Vitis vinifera]
Length = 729
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/533 (28%), Positives = 258/533 (48%), Gaps = 90/533 (16%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMF--VKITEPDTFMYNTII 77
+++ LV GF +S + L+ Y S G + A+++F + T D +N +I
Sbjct: 204 REVHTLVIKTGFLVRASVINALLTMYFNS----GKVADAYEVFEEAESTVHDDITFNVMI 259
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
G A +A+ ++ +M++ ++P + TF V+ +C+ + VH + +K GFE
Sbjct: 260 GGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCSS---ARVSHQVHAQAIKMGFE 316
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF--- 194
V N+ + +++CG+L+ ++FD + D+++W+ + YA+ +A F
Sbjct: 317 ACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQM 376
Query: 195 -------DEMPVRDLVS--------------------------WNVMITGYAKQGEMEKA 221
DE + L++ N +++ ++K G++E+A
Sbjct: 377 QRAGIEPDEFTIGSLLASSESLEIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQA 436
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
++FN + +++SWN +ISG++ G Q LE F E+ +P+ T+ +L+ CA +
Sbjct: 437 YQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASI 496
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
L GK++H +L SGV V GNALI MYAKCG ++ ++ +F M RD+ +W+
Sbjct: 497 SALRHGKQIHGYILR--SGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNA 554
Query: 341 LIGGLAFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+I A HG +E++ F+ MQ V+P + TF VL ACSHAG V++G + F M ++
Sbjct: 555 MISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMVND 614
Query: 400 YNIEPNIRHY---------------------------------------GVHGDVELGRL 420
Y EP H HG++ LGR+
Sbjct: 615 YGFEPGADHLSCIVDLLGRAGYLEEAERLINSKHLKIVSSIWWTLFSACAAHGNLRLGRI 674
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
LL + +++ YVLLSNIYA+ G+W R LM + + KQPGCS I
Sbjct: 675 VAGFLLEIEQNDPAVYVLLSNIYAAAGQWEEAANTRDLMQKTRVAKQPGCSWI 727
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 157/316 (49%), Gaps = 42/316 (13%)
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
N ++ +S + +V L+ Q+ + +KP+ FT S L AC L Y G +H +
Sbjct: 21 NQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLHAYSI 80
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
+ G + V N+L+ F YA+ +L +
Sbjct: 81 QTGLKAYTHVGNTLLSF-------------------------------YAKSKDLVSVQR 109
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ- 251
+F+E+ D+ SW +++ K G++ A LFN+ P+ V WNA+I+G C NK
Sbjct: 110 VFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITG---CAENKHT 166
Query: 252 --ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
AL +F EM +G R D T S+L+ C+ L L+ G++VH TL+ T + + NA
Sbjct: 167 EIALNLFREMHQLGVRHDKYTFASVLSLCS-LELLDFGREVH-TLVIKTGFLVRASVINA 224
Query: 310 LIDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
L+ MY G + A EVF D T++ +IGGLA G EE++ MF+EMQ +R
Sbjct: 225 LLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLR 284
Query: 368 PTEITFVGVLVACSHA 383
PTE+TFV V+ +CS A
Sbjct: 285 PTELTFVSVMSSCSSA 300
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 147/322 (45%), Gaps = 27/322 (8%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
+L +K QALV+ NG NS L+ + S G I A+++F ++ P+ +NTI
Sbjct: 397 SLEIVKMFQALVSKNGLNSKIEVSNALVSAFSK--HGQIEQAYQVFNNMSSPNLISWNTI 454
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
I G + L + + ++ ++KPN +T S VL C + G +HG I++ G
Sbjct: 455 ISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGV 514
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
+ N+LI +A CGDL+ + +F+ D+V+W+++ + YA+ G+ A F
Sbjct: 515 FSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKA 574
Query: 197 MPVR-----DLVSWNVMITGYAKQGEMEKANELFNEV-------PKRDVVSWNAMISGYV 244
M D ++ +++ + G ++ +FN + P D +S
Sbjct: 575 MQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLS--------C 626
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVT---MLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
+ + +A + E R + + + +L +ACA G+L +G+ V LL++
Sbjct: 627 IVDLLGRAGYLEEAERLINSKHLKIVSSIWWTLFSACAAHGNLRLGRIVAGFLLEIEQND 686
Query: 302 AKVLHGNALIDMYAKCGSIERA 323
V L ++YA G E A
Sbjct: 687 PAVY--VLLSNIYAAAGQWEEA 706
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/487 (29%), Positives = 250/487 (51%), Gaps = 64/487 (13%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F ++ + + +NT++ A + DA L+ +M + ++
Sbjct: 117 GLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLV 176
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH------ANCGDLNTASVLFDGD 166
++ G + K F R ++ + A G+++ A +LFD
Sbjct: 177 RS--------------GSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSM 222
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
+ +VV+W+++ +GY R L A LF +MP RD+ S N+MITG+ + ++++A +LF+
Sbjct: 223 PERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFD 282
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
E+P+R+VV+W M++GY+ ++ +L +F M G RP+ VT L L AC+DL L
Sbjct: 283 EMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCE 342
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
GK+VH ++ T+ G+AL+++YAKCG + A ++F R++D+ +W+ +I A
Sbjct: 343 GKQVH-QMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYA 401
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HG E+I ++ +MQ RP ++T+V +L ACSH+G V+EG K F+ M ++ +I
Sbjct: 402 HHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRD 461
Query: 407 RHY----------------------------------------GVHGDVELGRLANKRLL 426
HY HG+ +G LA + L+
Sbjct: 462 EHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLI 521
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFN 486
D +G Y LLSNIYAS G+W ++R M++ +KKQPGCS IE +K ++F
Sbjct: 522 QAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKV---HVFV 578
Query: 487 LKPKPNS 493
+ K +S
Sbjct: 579 ARDKSHS 585
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 56/308 (18%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV-RDL 202
N LI A G + A LFDG + DVV+W++L + YARRG L ARSLFD R++
Sbjct: 44 NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNV 103
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM--R 260
V+W +++GYA+ G +++A LF +P+R+VVSWN M+ Y + G A +F+ M R
Sbjct: 104 VTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVR 163
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL---DMTSGVAK-------------- 303
G + ML + + D G+ ++ M GVA+
Sbjct: 164 DAGSWNILLAML-VRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSM 222
Query: 304 ----VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS----------------------- 336
V+ NA+I Y + ++ A+++F M RD++
Sbjct: 223 PERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFD 282
Query: 337 --------TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
TW+T++ G +E S+ +FR M +RP ++TF+G L ACS + E
Sbjct: 283 EMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCE 342
Query: 389 GKKYFKLM 396
GK+ +++
Sbjct: 343 GKQVHQMI 350
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
G+ + N LI A G + A ++F G +RDV +W+ L+ A G ++ ++F
Sbjct: 36 GLERAQDPNRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLF- 94
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM--RDEYNIEPNIRHYGVHG 413
R R +T+ +L + AG V+E + F+ M R+ + + Y V G
Sbjct: 95 --DRSDARRNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAG 148
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 158/524 (30%), Positives = 261/524 (49%), Gaps = 89/524 (16%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDT 70
T+L QI AL++ + + D +Y GS ++ G + A + F + +
Sbjct: 165 TDLNMGIQIHALISKSRYLLD-------VYMGSALVDMYSKCGVVACAQRAFDGMAVRNI 217
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+N++I Q+ A+ ++ M ++P++ T + V+ AC G +H +
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHAR 277
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+VK +++ RN L+ G+A +D+ YA+ ++ A
Sbjct: 278 VVKR----DKY-RNDLVL----------------GNALVDM---------YAKCRRVNEA 307
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R +FD MP+R++VS M+ GYA+ ++ A +F+ + +++VVSWNA+I+GY G N+
Sbjct: 308 RLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENE 367
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD-----MTSGVAKVL 305
+A+ +F ++ P T +LL ACA+L DL++G++ H +L + + +
Sbjct: 368 EAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIF 427
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
GN+LIDMY KCG +E VF M +RDV +W+ +I G A +G+ ++ +FR+M
Sbjct: 428 VGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSG 487
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
+P +T +GVL ACSHAG VEEG++YF MR E + P H+
Sbjct: 488 QKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEA 547
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
VHG++ELG+ ++L+ + SG YVLLSN+YA
Sbjct: 548 NDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAEL 607
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPK 490
G W V +VRK M + KQPGCS IE + ++F +K K
Sbjct: 608 GRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRV---HVFMVKDK 648
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 144/295 (48%), Gaps = 34/295 (11%)
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
F+ +L +C R +H +I+K F F++N L+ + CG A
Sbjct: 22 FAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDA-------- 73
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
R +FD MP R+ S+N +++ K G++++A +F
Sbjct: 74 -----------------------RKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKS 110
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P+ D SWNAM+SG+ ++AL F +M S ++ + S L+ACA L DL +G
Sbjct: 111 MPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMG 170
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
++H L+ + + V G+AL+DMY+KCG + A F GM R++ +W++LI
Sbjct: 171 IQIH-ALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQ 229
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK--LMRDEY 400
+G A +++ +F M V P EIT V+ AC+ + EG + + RD+Y
Sbjct: 230 NGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKY 284
>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 162/530 (30%), Positives = 281/530 (53%), Gaps = 64/530 (12%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQ---IQALVTING---FNSDSSALRELIYSGSVVIPGAI 55
R+ ++L + T+ R+L+Q + AL+T NG FN +S L L + G +
Sbjct: 26 RSEPESYAKLIETYTHSRSLQQGKKLHALLTTNGYVRFNLIASNLITLYTTC-----GQL 80
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK--FTFSFVLK 113
+ A K+F KI + + + +I A+ A+ ++++M+ + + + F VLK
Sbjct: 81 SIARKLFDKIPQTNIHRWIALIATCARCGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLK 140
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
AC + R G VH ++K FE + FV ++LI ++ CG++ A +FDG D+VA
Sbjct: 141 ACGHVGDRIYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDGMVVKDLVA 200
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELF---- 225
+++ +GYA++G + A SL + M + ++V+WN +I+G+A++ + E +E+F
Sbjct: 201 MNAVVSGYAQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDREMVSEIFRLMN 260
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+ + DVVSW +++SG+V N++A + F++M +G P T+ +LL ACA +
Sbjct: 261 EDRVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATISALLPACATEARVR 320
Query: 286 VGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
GK++H L + GV L+ +AL+DMYAKCG I A +F M +++ T +++I G
Sbjct: 321 FGKEIHGYALVI--GVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTVTMNSMIFG 378
Query: 345 LAFHGFAEESIAMFREMQRLKV-RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403
A HG EE+I +F +M+ V + +TF L ACSH G +E G++ FK+M+++Y IE
Sbjct: 379 YANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRLFKIMQEKYCIE 438
Query: 404 PNIRHYGV---------------------------------------HGDVELGRLANKR 424
P + HY HG VEL +A K
Sbjct: 439 PRLEHYACMVDLFGRAGKLEEAYGIIKSMPVKPDLFVWGALLAACRNHGHVELAEVAAKH 498
Query: 425 LLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
L + + +G+ +LLS++YA G W +VE++++ + ++K G S I+
Sbjct: 499 LSELEPESAGNRLLLSSLYADAGTWGKVERIKRRIKKGKLRKLQGLSWID 548
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/442 (30%), Positives = 229/442 (51%), Gaps = 73/442 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F + + D + ++ Q++N +A+ L+ M++ + P++ + VL
Sbjct: 118 GRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVL 177
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C G +H ++ V ++LI +C +N
Sbjct: 178 STCAHTRNLRFGKAIHSYML---------VSDTLIDAQVSCALMNM-------------- 214
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
YA ++ MA L++ + +++V M+ GYAK G++E A+ +FN +P +D
Sbjct: 215 --------YASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKD 266
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VVSW+AMI+GY +AL +F +M+ G +PD++TMLS+++ACA++G LE + +H
Sbjct: 267 VVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHS 326
Query: 293 TLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ + + + K+L GNALIDM++KCGS+ A++VF M ++V TW+++I A HG
Sbjct: 327 FVENHS--MCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDG 384
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
++ +F M+ ++P +TF+G+L AC HAG VEEG+ FK+M +Y IEP HYG
Sbjct: 385 RSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGC 444
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+HGD+ELG A K++L + +
Sbjct: 445 MVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNH 504
Query: 433 SGDYVLLSNIYASRGEWNRVEK 454
G VLLSNIYA G WN V++
Sbjct: 505 GGAQVLLSNIYAEYGNWNDVKE 526
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 30/215 (13%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
++ YA G +E A +F+ +P RD+V+W M+ Y ++AL +F M+
Sbjct: 108 TALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVV 167
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVH---------------CTLLDMTSGVA-------- 302
PD V + ++L+ CA +L GK +H C L++M + A
Sbjct: 168 PDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKL 227
Query: 303 -------KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
+++ ++ YAK G +E A +F GM +DV +WS +I G A E++
Sbjct: 228 YNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEAL 287
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+F +MQR V+P EIT + V+ AC++ G +E+ +
Sbjct: 288 NLFHDMQRSGVKPDEITMLSVISACANVGALEKAR 322
>gi|302142959|emb|CBI20254.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/517 (29%), Positives = 245/517 (47%), Gaps = 115/517 (22%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
TN + ++ KKC+ ++ L+ + A + N D + + I + S+ I+YA F
Sbjct: 10 TNFNHLAQQIKKCSMVKELESVYASMIKANANQDCFLMNQFIAACSIF--HRIDYAILAF 67
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
+ EP+ F+YN +IR Q +P+ A+ Y M + + P FTFS ++KAC+ +
Sbjct: 68 THMQEPNVFVYNAMIRALVQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVKACSLVSELG 127
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
G VHG I KYGF+ + FV+ +L+ F+ N G
Sbjct: 128 FGEAVHGHIWKYGFDSHVFVQTALVDFYGNAG---------------------------- 159
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
++ AR +FDEM RD+ +W MI+ +A+ G+M A +LF+E+P R+ SWNAMI G
Sbjct: 160 ---KIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDG 216
Query: 243 YVLCGMNKQALEMFEEMRSVGERPD-DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
Y + A +F +M P+ D+ + + AC
Sbjct: 217 YSRLRNVESAELLFSQM------PNRDIISWTTMIAC----------------------- 247
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
Y++ +++++ VF +R +++ W+++I GLA HG+AEE++AMF M
Sbjct: 248 ------------YSQNKHLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRM 295
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
QR K++P +TF+ VL AC+HAG VEEG+K F M +++I P I HYG
Sbjct: 296 QREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGL 355
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+H ++++ ++A + + SG Y LL N+
Sbjct: 356 LEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNM 415
Query: 443 YASRGEWNRVEKVRKLMDDSDIKK-QPGCSLIEADDK 478
YA W+ V +R M + ++K PG S IE D K
Sbjct: 416 YAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRK 452
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/466 (30%), Positives = 236/466 (50%), Gaps = 74/466 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F K+ ++ + +I G Q++ +A+ L ++ + P+ +F+ L
Sbjct: 503 GMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSAL 562
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + +G +H +K G +FN +V N LI +A CG++ S +F D V
Sbjct: 563 SACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTV 622
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+W+SL +G + L AR +F++MP RD+VSW +I+ Y + G E
Sbjct: 623 SWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEV------------ 670
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
AL++F +M + G +P+ +T+ SLL+AC +LG +++G++ H
Sbjct: 671 -------------------ALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHA 711
Query: 293 TLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ + G L GN+LI MY KCG E VF M + D+ TW+ ++ G A +G
Sbjct: 712 LIFKL--GFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLG 768
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
+E+I +F +M+ + P +++F+GVL ACSHAG V+EG +F M +Y I P + HY
Sbjct: 769 KEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTC 828
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+H +VELG+ +RL M K +
Sbjct: 829 MVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPK 888
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
S YVLLSN++AS+G W++V ++RKLM D + K+PG S I+ +K
Sbjct: 889 SATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNK 934
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 193/401 (48%), Gaps = 63/401 (15%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A ++F ++ E ++ + +I G + +A ++ +M + +P++ F VL A T
Sbjct: 314 ARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITG 373
Query: 118 LLYRNMGFCVHGKIVKYGFE---------FNRFVRN----------------------SL 146
L + + +K G+E N + RN ++
Sbjct: 374 LDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTM 433
Query: 147 IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWN 206
I A CG L+ A L++ + V +++ YA+ G + AR +FDE+ ++V+WN
Sbjct: 434 IAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWN 493
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
+I GY + G +++A +LF ++P ++ SW AMI+G+V +++ALE+ E+ G P
Sbjct: 494 AIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVP 553
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D + S L+ACA++GD+E+G+ +H +L T N LI MYAKCG++E V
Sbjct: 554 SDSSFTSALSACANIGDVEIGRVIH-SLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHV 612
Query: 327 FLGMRDRDVSTWSTLIGGLAFH-------------------------------GFAEESI 355
F +R +D +W++LI GL+ + G E ++
Sbjct: 613 FRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVAL 672
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+F +M ++P ++T +L AC + G ++ G+++ L+
Sbjct: 673 DLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALI 713
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 157/289 (54%), Gaps = 16/289 (5%)
Query: 124 GFCVHGKIVKYGFEFNRFVRNS------LIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
G+ +GK+ + F+ FV + L+ +A G + A +F+ + +VV+W+++
Sbjct: 211 GYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAM 270
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
+GY + G+L AR LFDEMP +++ SWN ++TGY M +A ELF+++P+R+ VSW
Sbjct: 271 ISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWM 330
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
MISGYV +A ++F +M RPD + +L+A L DLE+ + +
Sbjct: 331 VMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIK- 389
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
T V+ G+A+++ Y + GS++ A+ F M +R+ +W+T+I A G +++I +
Sbjct: 390 TGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQL 449
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
+ + V T ++ A + G++++ + F DE + PN+
Sbjct: 450 YERVPEQTV----ATKTAMMTAYAQVGRIQKARLIF----DEI-LNPNV 489
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 40/241 (16%)
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
F N+ I G + A +F+ + DVV+W+S+ GY++ G++ AR LFD +
Sbjct: 172 FQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGK 231
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
++ +W +++TGYAK+G +E+A E+F + +R+VVSWNAMISGYV G K A ++F+EM
Sbjct: 232 NIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM- 290
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
P+ V N+++ Y C +
Sbjct: 291 -----PEK----------------------------------NVASWNSVVTGYCHCYRM 311
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A E+F M +R+ +W +I G E+ +F +M R RP + FV VL A
Sbjct: 312 SEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAI 371
Query: 381 S 381
+
Sbjct: 372 T 372
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
N I + G +E A VF M RDV +W+++I G + +G +E+ +F +R
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR 234
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426
T+ +L + G++EE ++ F+ M + + N + G V+ G L N R L
Sbjct: 235 ----TWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAM---ISGYVQNGDLKNARKL 286
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/457 (30%), Positives = 231/457 (50%), Gaps = 73/457 (15%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A ++F + E D + ++ +QN + + L +M++ + P++ + VL C
Sbjct: 47 ARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCG- 105
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
H + ++ G + +++ S I+ DA++ S+L
Sbjct: 106 ----------HTRHLRSGKTIHSYIQVSDIFV----------------DARLS----SAL 135
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
YA ++ MA ++ M +DLVS M+ GYAK G++E A +FN + ++DVVSW+
Sbjct: 136 INMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWS 195
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
AMIS Y + L +F +M+ G PD++TMLS+++ACA++G L+ + +H + +
Sbjct: 196 AMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGN- 254
Query: 298 TSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
G K+L NALIDM++KCGS+ A+ +F M ++V TW+++I A HG ++
Sbjct: 255 -HGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALT 313
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
+F +M+ V P +TF+ +L AC HAG V EG+ F+ M EY IEP HYG
Sbjct: 314 LFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLM 373
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
+HGD+ELG A K++L + + G YV
Sbjct: 374 GRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHDGAYV 433
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
LLSNI+A G WN +K+R +M + K+ G S +E
Sbjct: 434 LLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWLE 470
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 146/319 (45%), Gaps = 27/319 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A +F + E D ++ +I A++ P + + L+ +M+ C + P++ T V+
Sbjct: 174 GKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVI 233
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + + +H + +GF + N+LI + CG L A +F+ + +V+
Sbjct: 234 SACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVI 293
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV 228
W+S+ A +A G+ A +LF +M + V++ V++ G + + LF +
Sbjct: 294 TWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECM 353
Query: 229 -------PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
PK + + M+ + ++A+++ E M RP+ SLL AC
Sbjct: 354 LQEYRIEPKHE--HYGCMVDLMGRAKLMQEAVDLIESMHI---RPNVAIWGSLLAACWMH 408
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALI---DMYAKCGSIERAIEVFLGMRDRDVST- 337
GD+E+G+ +L++ H A + +++AK G+ A ++ + M+ VS
Sbjct: 409 GDIELGEFAAKKILELDPN-----HDGAYVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKE 463
Query: 338 --WSTLIGGLAFHGFAEES 354
+S L HGF E+
Sbjct: 464 TGYSWLELNCTVHGFQLET 482
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 17/224 (7%)
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
++L YA ++ AR +FD MP RDLV+W VM+ Y + L N++ + VV
Sbjct: 32 TALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSRVV 91
Query: 235 SWNAMISGYVL--CGMNKQALEMFEEMRSVGERPD---DVTMLS-LLTACADLGDLEVGK 288
+ +I VL CG + L + + S + D D + S L+ A D+E+
Sbjct: 92 P-DQVILATVLSTCGHTRH-LRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMAD 149
Query: 289 KVHCTLLDMTSGVAK--VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
K++ SG+ + ++ A++ YAK G IE A +F M ++DV +WS +I A
Sbjct: 150 KIY-------SGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYA 202
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ E + +F +MQ V P EIT + V+ AC++ G +++ +
Sbjct: 203 ENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKAR 246
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 157/525 (29%), Positives = 260/525 (49%), Gaps = 103/525 (19%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI-TEP 68
R+ + C ++ L++I + V ING + S L+ +V + G+++YA +F + ++P
Sbjct: 10 RMLQGCNSMNKLRKIHSHVIINGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDSDP 69
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
T +N +IRG + S +PL + Y N+ S V +
Sbjct: 70 STSAWNYLIRGFSISSSPLYTILYY----------NRMLLSSVSRP-------------- 105
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
I + F R LI C +L+ + + R G L+
Sbjct: 106 -DIFTFSFALKACERIRLI---PKCLELHGSVI---------------------RSGFLA 140
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
A +VS N ++ Y+ G +E A+++F+E+P RD+VSWNAMIS + G+
Sbjct: 141 DA-----------IVSTN-LVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGL 188
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
+ QA M+ M + G D T+++LL++CA + L +G +H D+ + V N
Sbjct: 189 HHQAFSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIACDIRCE-SSVFVCN 247
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
ALIDMYAKCGS+E A+ VF GMR RDV TW+++I G HG E+I+ FR+M VRP
Sbjct: 248 ALIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRP 307
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
+TF+G+L+ CSH G V+EG ++F++M ++++ PN++HYG
Sbjct: 308 NAVTFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQLEKALEM 367
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+H ++ELG +A K+L+ + +GDYVL+++IY++ +
Sbjct: 368 IHTSSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDA 427
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSG 494
+RKL+ D++ PG S IE D+ +++ + K P S
Sbjct: 428 QGFASMRKLIRSHDLRTIPGWSWIEIGDQVH-KFVIDDKMHPESA 471
>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 690
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/516 (29%), Positives = 250/516 (48%), Gaps = 81/516 (15%)
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
++F ++ E D +NT+I Q + A+ L+ +ME+ +PN + + + AC+RLL
Sbjct: 162 QVFDEMPERDVASWNTVISSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLL 221
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
G +H K +K FE + +V ++L+ + C L A +F + +VAW+S+
Sbjct: 222 CLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIR 281
Query: 180 GYARRGELSMARSLFDEM----------------------------------PVRDLVSW 205
GY RG+ L + M +R +V
Sbjct: 282 GYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDA 341
Query: 206 NV-----MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
++ +I Y K GE++ A +F + K V SWN MISGYV G +A++++++M
Sbjct: 342 DIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMV 401
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
SVG +PD VT S+L+ C+ L LE GK++H ++ + ++L +AL+DMY+KCG++
Sbjct: 402 SVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLL-SALLDMYSKCGNV 460
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ A +F + +DV +W+ +I HG E++ F EMQ+ V+P +TF+ VL AC
Sbjct: 461 KEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSAC 520
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
HAG ++EG KYF MR +Y IE +I Y
Sbjct: 521 GHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETRDNAE 580
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+H D LG K L+ D++ Y +L N+YAS W+ ++VR M
Sbjct: 581 LLSTLFCACCLHRDHLLGYTIAKLLVEKYPDDASTYTVLFNLYASGESWDAAKRVRLKMK 640
Query: 461 DSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
+ ++K+PGCS IE ++K + + P + N+
Sbjct: 641 EVGMRKKPGCSWIEMNEKV-CHFFAEDRSHPQAENV 675
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 175/393 (44%), Gaps = 45/393 (11%)
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKM 169
+L+ CT VH +I+ G + + SLI + C D +A ++F+ D +
Sbjct: 9 LLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENIDIRS 68
Query: 170 DVVAWSSLTAGYARRGEL-------------------------------SMARSLFDEM- 197
DV W+SL +GY++ ++ R M
Sbjct: 69 DVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLGRMI 128
Query: 198 --------PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
V D+V + ++ YAK E + ++F+E+P+RDV SWN +IS + G
Sbjct: 129 HTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDA 188
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
++ALE+F M P+ V++ ++AC+ L LE GK++H L + + ++ +A
Sbjct: 189 EKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVN-SA 247
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
L+DMY +C +E A EVF MR + + W+++I G G ++ + + M RP+
Sbjct: 248 LVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPS 307
Query: 370 EITFVGVLVACSHAGKVEEGK---KYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426
+ T +L+ACS + + GK Y + +I N ++ +LA L
Sbjct: 308 QTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFL 367
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459
+KD + ++ + Y S G W + V M
Sbjct: 368 KTQKDVVESWNVMISGYVSVGNWFKAVDVYDQM 400
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 153/328 (46%), Gaps = 46/328 (14%)
Query: 40 LRELIYSGSVVIPGAINY---AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM 96
L E + S V + G ++ A ++F ++ +N++IRG + V L +M
Sbjct: 240 LDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRM 299
Query: 97 EKCSIKPNKFTFSFVLKACTRLLYRNM--GFCVHGKIVKYGFEFNRFVRNSLIYFHANCG 154
+P++ T + +L AC+R RN+ G VHG +++ + + ++ SLI + CG
Sbjct: 300 IIEGTRPSQTTLTSILMACSR--SRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCG 357
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV----RDLVSWNVMIT 210
++ A +F K V +W+ + +GY G A ++D+M D+V++ +++
Sbjct: 358 EVKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLS 417
Query: 211 G-----------------------------------YAKQGEMEKANELFNEVPKRDVVS 235
Y+K G +++A+ +FN +PK+DVVS
Sbjct: 418 TCSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVS 477
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
W MIS Y G ++AL F+EM+ G +PD VT L++L+AC G ++ G K +
Sbjct: 478 WTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMR 537
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERA 323
A + + LID+ + G + A
Sbjct: 538 SKYGIEASIEQYSCLIDILGRAGRLLEA 565
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 141/315 (44%), Gaps = 19/315 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F+K + +N +I G N AV +Y QM ++P+ TF+ VL
Sbjct: 357 GEVKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVL 416
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C++L G +H I + E + + ++L+ ++ CG++ AS +F+ K DVV
Sbjct: 417 STCSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVV 476
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+ + + Y G+ A FDEM D V++ +++ G +++ + F+++
Sbjct: 477 SWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQM 536
Query: 229 PKRDVVSWNAMISGYV----LCGMNKQALEMFEEMRSVGERPDDVTMLS-LLTACADLGD 283
R A I Y + G + LE + ++ E D+ +LS L AC D
Sbjct: 537 --RSKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETRDNAELLSTLFCACCLHRD 594
Query: 284 LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL-----GMRDRDVSTW 338
+G + L++ A L ++YA S + A V L GMR + +W
Sbjct: 595 HLLGYTIAKLLVEKYPDDASTY--TVLFNLYASGESWDAAKRVRLKMKEVGMRKKPGCSW 652
Query: 339 STLIGGLAFHGFAEE 353
+ + H FAE+
Sbjct: 653 IEMNEKVC-HFFAED 666
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 242/491 (49%), Gaps = 74/491 (15%)
Query: 46 SGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK 105
+G+ G + K+F + D + ++ Q++N +A+ L+ +M+ + P++
Sbjct: 192 AGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQ 251
Query: 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165
+ VL AC + + +G +H ++ + ++LI +A+C ++ A L++
Sbjct: 252 LILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNE 311
Query: 166 DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF 225
+ D+V+ +++ +GYAR ++ +ARS+FD MP +D+VSW+ MI+GY +
Sbjct: 312 MPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQ-------- 363
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+AL +F M+ G R D++TMLS+++ACA+LG L+
Sbjct: 364 -----------------------PNEALSLFNGMQECGIRSDEITMLSVISACANLGSLD 400
Query: 286 VGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
K +H + + SG+ KVLH NALIDM+AKCG I A+ VF M ++V TW+++I
Sbjct: 401 KAKWIHAFIKN--SGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISA 458
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
A HG + S+ +F +M+ P E+TF+ +L AC HAG V EG+ F M +Y IEP
Sbjct: 459 FAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEP 518
Query: 405 NIRHYG---------------------------------------VHGDVELGRLANKRL 425
HYG +HGD++LG A K++
Sbjct: 519 KHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIWGSLLAACWMHGDLKLGAFAAKKI 578
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLF 485
L + + G VLL IY N ++VR +M + K+ G S +E ++ F ++
Sbjct: 579 LQLDPNHDGASVLLLKIYMKSDNLNNAQEVRGVMKLHRVSKETGLSWMELNEP-FHEFAA 637
Query: 486 NLKPKPNSGNL 496
+ P SG +
Sbjct: 638 GGEKHPESGKI 648
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 67/249 (26%)
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
++L YA G + R +FD M VRD+VSW VM+ Y +
Sbjct: 189 TALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNY---------------- 232
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
K+AL +F +M++ G PD + + ++L AC + L +GK +H +
Sbjct: 233 ---------------KEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYM 277
Query: 295 L--DMTSGVAKVLHGNALIDMYAKCGSIE---------------------------RAIE 325
L DM G +ALI +YA C ++E R +E
Sbjct: 278 LVSDMIIGAHI---SSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVE 334
Query: 326 ----VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
+F GM ++DV +WS +I G E++++F MQ +R EIT + V+ AC+
Sbjct: 335 IARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACA 394
Query: 382 HAGKVEEGK 390
+ G +++ K
Sbjct: 395 NLGSLDKAK 403
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
G AL YA CG + +VF GM RDV +W ++ +E++ +F +M+ V
Sbjct: 188 GTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGV 247
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
P ++ VL AC H + GK M
Sbjct: 248 VPDQLILATVLPACGHIRHLRIGKAIHSYM 277
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/461 (31%), Positives = 231/461 (50%), Gaps = 79/461 (17%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A ++F +I EPD F YN ++ + + A + QM P K T S+
Sbjct: 51 GKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQM------PVKDTASW-- 102
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
N++I + G ++ A LF + V
Sbjct: 103 -------------------------------NTMISGFSQNGMMDQARELFLVMPVRNSV 131
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+W+++ +GY G+L +A+ LF+ PVR +V+W MITG+ K G++E A + F E+P ++
Sbjct: 132 SWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKN 191
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+V+WNAMI+GY+ + L++F+ M G RP+ ++ S+L C++L L++GK+VH
Sbjct: 192 LVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVH- 250
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
L+ + + G +L+ MY KCG +E A ++FL M +DV TW+ +I G A HG E
Sbjct: 251 QLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGE 310
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+++ +F +M+ ++P ITFV VL AC+HAG V+ G +YF M +Y +E HY
Sbjct: 311 KALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCV 370
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+H ++EL A K LLN+ + +
Sbjct: 371 VDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESA 430
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
YV L+N+YA+ W+ V VR+ M D+ + K PG S IE
Sbjct: 431 AGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIE 471
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 138/259 (53%), Gaps = 10/259 (3%)
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA-RRGELSMARSLFDEM 197
N N +I H GDLN+A +F+ V W+S+ AGY+ RRG++ +AR LFD +
Sbjct: 4 NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
P D+ S+N+M+ Y ++E A F+++P +D SWN MISG+ GM QA E+F
Sbjct: 64 PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
M + V+ ++++ + GDL++ K+ L + V V+ A+I + K
Sbjct: 124 VM----PVRNSVSWNAMISGYVESGDLDLAKQ-----LFEVAPVRSVVAWTAMITGFMKF 174
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
G IE A + F M +++ TW+ +I G + AE + +F+ M RP + VL
Sbjct: 175 GKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVL 234
Query: 378 VACSHAGKVEEGKKYFKLM 396
+ CS+ ++ GK+ +L+
Sbjct: 235 LGCSNLSALKLGKQVHQLI 253
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 156/498 (31%), Positives = 243/498 (48%), Gaps = 82/498 (16%)
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+ P F YN IR A S+ P ++ L+ M + +I+P+ +T F+L A R ++
Sbjct: 114 SAPTAFSYNVAIRFFASSR-PHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLAR 172
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR-- 183
H + K G + +SLI ++ D A +FDG DVV+W+++ Y R
Sbjct: 173 AAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVG 232
Query: 184 -RGELS-MARSLFDEMPVR-----------------DLV--------SWNV--------- 207
GE+ M R + E V DLV SW+
Sbjct: 233 MNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVG 292
Query: 208 --MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
++ Y K GE+ +A +F+ + +D+V+WNAMI+GY GM+ +A+ +F MR G R
Sbjct: 293 SALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMR 352
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD +T+ +L+AC+ +G LE+G ++ + V G AL+DMYAKCG +++AIE
Sbjct: 353 PDKITLAGVLSACSAVGALELGSELD-GYASRRGLYSNVYVGTALVDMYAKCGDLDKAIE 411
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHAG 384
VF M ++V++W+ LI GLAF+G +E+I F+ M+ + ++P +ITF+GVL AC HAG
Sbjct: 412 VFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAG 471
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYGVHGD------------------------------ 414
V++GK++F + E+ I P I HY D
Sbjct: 472 LVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGAL 531
Query: 415 ---------VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
VE+G R++ + S +YV+ S IYAS + K+R LM + +
Sbjct: 532 LAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVN 591
Query: 466 KQPGCSLIEADDKAFLQY 483
K PGCS +E K Y
Sbjct: 592 KTPGCSWVEVSGKVLEFY 609
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/445 (32%), Positives = 225/445 (50%), Gaps = 73/445 (16%)
Query: 104 NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF 163
+ FT+SF++KA + + VH +VK G + FV N+LI ++ G + A +F
Sbjct: 5 DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVF 63
Query: 164 DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANE 223
D + DVV+W++ A R GEL+ R LFDEMP +D VSWN ++ GY K GE+E A E
Sbjct: 64 DEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFE 123
Query: 224 LFNEVPKRDVVSWNAMISGYV----------------------------LC---GMNKQA 252
LF +P+R+VVSW+ M+SGY C G+ +A
Sbjct: 124 LFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEA 183
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
++F +M+ D ++S+L ACA+ G L +GK++H + G + + NALID
Sbjct: 184 GKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHV-CNALID 242
Query: 313 MYAKCGSIERAIEVF-LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
M+ KCG + RA VF +D +W+++IGG A HG ++++ +F +M++ P +
Sbjct: 243 MFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAV 302
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
T + VL AC+H G V+EG+++F M +Y I P I HYG
Sbjct: 303 TMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKS 362
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+H +VE +A L ++ +G+Y +LSNIYA G+W+ +
Sbjct: 363 MPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDM 422
Query: 453 EKVRKLMDDSDIKKQPGCSLIEADD 477
K R M + +K G S +E ++
Sbjct: 423 AKARMQMKGTGSQKTAGSSWVELNE 447
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 111/237 (46%), Gaps = 15/237 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F K+ + + ++ AQ +A L+ QM++ S++ + +L
Sbjct: 147 GDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSIL 206
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-KMDV 171
AC ++G +H + K + V N+LI CG +N A +FD + + D
Sbjct: 207 AACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDS 266
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNE 227
V+W+S+ G+A G A LF +M + D V+ +++ G +++ F+
Sbjct: 267 VSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSN 326
Query: 228 VPKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+ +RD + + MI G+ K+A+++ ++S+ P++V SLL+AC
Sbjct: 327 M-ERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDL---IKSMPWEPNEVIWGSLLSAC 379
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/475 (32%), Positives = 241/475 (50%), Gaps = 83/475 (17%)
Query: 70 TFMYNTIIRGSAQSQN-PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
T + + +IR ++ S + P + L+ + + +++P+ TF F+ +A RL + +H
Sbjct: 24 TPLLDPLIRATSSSPSTPHLSFSLFLLLLRSALRPSHLTFPFLGRAAARLASPRLALSLH 83
Query: 129 GKIVKYGF-EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
++ G + + NS ++ +A C L D
Sbjct: 84 SHPLRLGLLPCDLHIANSFVHMYAACA-------LPD----------------------- 113
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
+AR LFDE+P + VSWN ++ GYAK ++ A E+F+ +P RDVVSW+AMI G V CG
Sbjct: 114 -LARRLFDEIPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCG 172
Query: 248 MNKQALEMFEEMRSV----GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
++AL +FE M + G R +DVTM+S+L ACA LGDL G+++H L +
Sbjct: 173 EYREALALFEMMEAAATGHGVRANDVTMISMLGACAHLGDLRRGRQMH-RYLQERGFLLN 231
Query: 304 VLHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ +L+DMYAKCG+I A+EVF + + DV W+ +IGGLA HG E++ +F+EM
Sbjct: 232 LRLATSLVDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQEM 291
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
Q V P EIT++G+L AC H G V+E ++F + + + P++ HY
Sbjct: 292 QHSGVVPDEITYLGLLSACVHGGLVDEAWRFFCSLEAQ-GLRPHVEHYACLVDVLSRAGR 350
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+HG VELG + ++L+ ++ D G Y+ LSNI
Sbjct: 351 LEEAYGVVKSMPMEPSVSVLGAILNACHLHGWVELGEVVGRQLVRLQPDHDGRYIGLSNI 410
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLD 497
YA W +K RK+M + +KK PG S I+ + F + K +SG+ D
Sbjct: 411 YAVAKRWQEAKKARKVMSERGLKKIPGFSEIDVGGR---PCRFIAQDKTHSGSTD 462
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 156/498 (31%), Positives = 243/498 (48%), Gaps = 82/498 (16%)
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+ P F YN IR A S+ P ++ L+ M + +I+P+ +T F+L A R ++
Sbjct: 114 SAPTAFSYNVAIRFFASSR-PHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLAR 172
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR-- 183
H + K G + +SLI ++ D A +FDG DVV+W+++ Y R
Sbjct: 173 AAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVG 232
Query: 184 -RGELS-MARSLFDEMPVR-----------------DLV--------SWNV--------- 207
GE+ M R + E V DLV SW+
Sbjct: 233 MNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVG 292
Query: 208 --MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
++ Y K GE+ +A +F+ + +D+V+WNAMI+GY GM+ +A+ +F MR G R
Sbjct: 293 SALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMR 352
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD +T+ +L+AC+ +G LE+G ++ + V G AL+DMYAKCG +++AIE
Sbjct: 353 PDKITLAGVLSACSAVGALELGSELD-GYASRRGLYSNVYVGTALVDMYAKCGDLDKAIE 411
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHAG 384
VF M ++V++W+ LI GLAF+G +E+I F+ M+ + ++P +ITF+GVL AC HAG
Sbjct: 412 VFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAG 471
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYGVHGD------------------------------ 414
V++GK++F + E+ I P I HY D
Sbjct: 472 LVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGAL 531
Query: 415 ---------VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
VE+G R++ + S +YV+ S IYAS + K+R LM + +
Sbjct: 532 LAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVN 591
Query: 466 KQPGCSLIEADDKAFLQY 483
K PGCS +E K Y
Sbjct: 592 KTPGCSWVEVSGKVLEFY 609
>gi|297819530|ref|XP_002877648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323486|gb|EFH53907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 786
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 227/496 (45%), Gaps = 95/496 (19%)
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I E + + N +IR + + + ++ M C +KP+ +TF VLKAC+
Sbjct: 1 VFDEIPERNVIIINVMIRSYVNNGFYREGIQVFVTMCSCHVKPDHYTFPCVLKACSCSGN 60
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+G +HG K G FV N L+ + CG
Sbjct: 61 IVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCG-------------------------- 94
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANE----------------- 223
LS AR + DEM RD+VSWN ++ GYA+ + A E
Sbjct: 95 -----FLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTM 149
Query: 224 --------------------LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
+F ++ K+ +VSWN MI Y+ M +A+E++ M + G
Sbjct: 150 ASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADG 209
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
PD V++ S+L AC D L +GKK+H ++ + +L NALIDMYAKCG ++RA
Sbjct: 210 FEPDAVSITSVLPACGDTSALSLGKKIH-GYIERKKLIPNLLLENALIDMYAKCGCLDRA 268
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+VF M+ RDV +W+ +I F G +++A+F +MQ + P I FV L ACSHA
Sbjct: 269 RDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHA 328
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV-----------------------ELGRL 420
G +EEG+ FKLM D Y I P + H D+ E G L
Sbjct: 329 GLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKMKEAYKFIQECQWNQTREFGEL 388
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
A R + + +SG YVLLSNIYA G W +R +M +KK PG S +E ++
Sbjct: 389 A--RCILTQTSQSGYYVLLSNIYAKAGRWEEETNIRNIMKSKGLKKNPGASNVEV-NREI 445
Query: 481 LQYLFNLKPKPNSGNL 496
+L + P S +
Sbjct: 446 HTFLVGDRSHPQSNEI 461
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 132/286 (46%), Gaps = 24/286 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A + +++ D +N+++ G AQ+Q DA+ + +ME I + T + +L
Sbjct: 94 GFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLL 153
Query: 113 KACT-----RLLYRNMGFCVHGK--IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165
A + ++Y F GK +V + +++N++ A L+ G
Sbjct: 154 PAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPV---------EAVELYSG 204
Query: 166 ----DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS----WNVMITGYAKQGE 217
+ D V+ +S+ LS+ + + + + L+ N +I YAK G
Sbjct: 205 MEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGC 264
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
+++A ++F + RDVVSW AMIS Y G A+ +F +M+ G PD + ++ L A
Sbjct: 265 LDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAA 324
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
C+ G LE G+ + D ++ H ++D+ + G ++ A
Sbjct: 325 CSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKMKEA 370
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 4/194 (2%)
Query: 36 DSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQ 95
D+ + L+ + S + Y MF K+ + +N +I ++ P++AV LY+
Sbjct: 145 DAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSG 204
Query: 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
ME +P+ + + VL AC ++G +HG I + N + N+LI +A CG
Sbjct: 205 MEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGC 264
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITG 211
L+ A +F+ DVV+W+++ + Y G A +LF +M V D +++ +
Sbjct: 265 LDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAA 324
Query: 212 YAKQGEMEKANELF 225
+ G +E+ F
Sbjct: 325 CSHAGLLEEGRSCF 338
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 164/549 (29%), Positives = 258/549 (46%), Gaps = 113/549 (20%)
Query: 13 KKCTNLRTLK---QIQALVTINGFNSDSSALRELIY------------------------ 45
K C L LK Q+ + +++GF+SDS L++
Sbjct: 122 KACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVV 181
Query: 46 SGSVVIP-----GAINYAHKMFVKI----TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM 96
S S ++ G ++ A ++F ++ +P+ +N +I G S +AV ++ M
Sbjct: 182 SWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241
Query: 97 EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156
+P+ T S VL A L MG +HG ++K G ++ V ++LI + C
Sbjct: 242 HLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKC--- 298
Query: 157 NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG 216
S T+ E+S +FD+M D+ S N I G ++ G
Sbjct: 299 -------------------SCTS------EMS---QVFDQMDHMDVGSCNAFIFGLSRNG 330
Query: 217 EMEKANELFNEVPKR----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
++E + LF ++ + +VVSW +MI+ G + +ALE+F EM+ G +P+ VT+
Sbjct: 331 QVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIP 390
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMR 331
LL AC ++ L GK HC + G++ V G+ALIDMYAKCG I+ + F G+
Sbjct: 391 CLLPACGNIAALMHGKAAHC--FSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIP 448
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+++ W+ +I G A HG A+E++ +F MQR +P I+F VL ACS +G EEG
Sbjct: 449 TKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSY 508
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
YF M +Y IE + HY VH
Sbjct: 509 YFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVH 568
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
+V LG +A ++L + G+Y+LLSNIYAS+G WN V +VR +M + ++K PGCS
Sbjct: 569 NNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSW 628
Query: 473 IEADDKAFL 481
IE +K +
Sbjct: 629 IEVKNKVHM 637
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 164/345 (47%), Gaps = 37/345 (10%)
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+ EP+ F ++T+I ++ A+ ++QM + P+ +KAC L
Sbjct: 74 VPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPA 133
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
VHG GF+ + FV++SL++ + C + A +FD + DVV+WS+L A YAR+
Sbjct: 134 RQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQ 193
Query: 185 GELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
G + A+ LF EM +L+SWN MI G+ G L++E
Sbjct: 194 GCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSG-------LYSE------------- 233
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
A+ MF +M G PD T+ S+L A DL DL +G +H ++
Sbjct: 234 -----------AVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLV 282
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
K + +ALIDMY KC +VF M DV + + I GL+ +G E S+ +FR+
Sbjct: 283 SDKCV-SSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQ 341
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
++ + +++ ++ CS G+ E + F+ M+ ++PN
Sbjct: 342 LKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIA-GVKPN 385
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 15/193 (7%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+++ YA A + + VP+ +V S++ +I + AL F +M + G PD
Sbjct: 54 LLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPD 113
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV-------LHGNALIDMYAKCGSI 320
+ + S + ACA L L+ ++VH G+A V ++L+ MY KC I
Sbjct: 114 NRVLPSAVKACAGLSALKPARQVH--------GIASVSGFDSDSFVQSSLVHMYIKCNQI 165
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A VF M + DV +WS L+ A G +E+ +F EM V+P I++ G++
Sbjct: 166 RDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGF 225
Query: 381 SHAGKVEEGKKYF 393
+H+G E F
Sbjct: 226 NHSGLYSEAVLMF 238
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 146/500 (29%), Positives = 239/500 (47%), Gaps = 81/500 (16%)
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
++F K+ D +NT+I G +Q +++ L+ +M KP+ T + +L+AC L
Sbjct: 331 RIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLG 389
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
G VH ++ G+E + N LI +A CG+L + +F G D V+W+S+
Sbjct: 390 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 449
Query: 180 GYARRGELSMARSLFDEMPV--------------------------------------RD 201
Y + G A LF M +
Sbjct: 450 VYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSN 509
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
+V N ++ YAK GEM + ++F + RD+++WN +I+ V L M MR+
Sbjct: 510 IVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRT 569
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSI 320
G PD TMLS+L C+ L GK++H + + G+ + V GN LI+MY+KCGS+
Sbjct: 570 EGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL--GLESDVPVGNVLIEMYSKCGSL 627
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ +VF M+ +DV TW+ LI +G ++++ F EM+ + P + FV ++ AC
Sbjct: 628 RNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFAC 687
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
SH+G VEEG YF M+ +Y IEP I HY
Sbjct: 688 SHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSI 747
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+ GD E+ + ++R++ + D++G YVL+SN+YA+ G+W++V +RK +
Sbjct: 748 WGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKA 807
Query: 462 SDIKKQPGCSLIEADDKAFL 481
+KK PGCS +E +K ++
Sbjct: 808 RGLKKDPGCSWMEIQNKVYV 827
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 189/363 (52%), Gaps = 44/363 (12%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ + +N+IIR + +A+ LY++ ++ ++P+ +TF V+ AC LL M +H
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 197
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG--- 185
+++ GF + ++ N+LI + DL+ A +F+ DVV+W+SL +GY G
Sbjct: 198 DRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 257
Query: 186 -----------------------------------ELSMARSLFDEMPV-RDLVSWNVMI 209
E + L +++ + +D++ N ++
Sbjct: 258 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 317
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
+ Y K + +F+++ RD VSWN MI GY G+ ++++++F EM + +PD +
Sbjct: 318 SMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLL 376
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFL 328
T+ S+L AC LGDLE GK VH ++ TSG N LI+MYAKCG++ + EVF
Sbjct: 377 TITSILQACGHLGDLEFGKYVHDYMI--TSGYECDTTASNILINMYAKCGNLLASQEVFS 434
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
GM+ +D +W+++I +G +E++ +F+ M + V+P +T+V +L + G +
Sbjct: 435 GMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXL 493
Query: 389 GKK 391
GK+
Sbjct: 494 GKE 496
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/442 (27%), Positives = 200/442 (45%), Gaps = 62/442 (14%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTI 76
K I V GF SD +Y G+ +I ++ A K+F ++ D +N++
Sbjct: 194 KSIHDRVLXMGFGSD-------LYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSL 246
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
I G + +A+ +Y + + P+ +T S VL+AC L G +HG I K G
Sbjct: 247 ISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGI 306
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
+ + V N L+ + L +FD D V+W+++ GY++ G + LF E
Sbjct: 307 KKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFME 366
Query: 197 MPVR--------------------------------------DLVSWNVMITGYAKQGEM 218
M + D + N++I YAK G +
Sbjct: 367 MVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNL 426
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+ E+F+ + +D VSWN+MI+ Y+ G +A+++F+ M++ +PD VT + LL+
Sbjct: 427 LASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSVTYVMLLSMS 485
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
LGDL +GK++HC L M + ++ N L+DMYAKCG + +++VF M+ RD+ TW
Sbjct: 486 TQLGDLXLGKELHCDLAKMGFN-SNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITW 544
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+T+I + M M+ V P T + +L CS +GK+
Sbjct: 545 NTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE------- 597
Query: 399 EYNIEPNIRHYGVHGDVELGRL 420
I I G+ DV +G +
Sbjct: 598 ---IHGCIFKLGLESDVPVGNV 616
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 169/338 (50%), Gaps = 14/338 (4%)
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKM----DVVAWSSLTAGYARRGELSMARSLF 194
N + NS+I + G + A L+ ++ D + S+ A + MA+S+
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 197
Query: 195 DEMPV----RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
D + DL N +I Y + +++KA ++F E+P RDVVSWN++ISGY G
Sbjct: 198 DRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 257
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ALE++ R++G PD TM S+L AC LG +E G +H L++ V+ N L
Sbjct: 258 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIH-GLIEKIGIKKDVIVNNGL 316
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+ MY K + +F M RD +W+T+I G + G EESI +F EM + +P
Sbjct: 317 LSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDL 375
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLM-RDEYNIEPNIRHYGVHGDVELGR-LANKRLLN- 427
+T +L AC H G +E GK M Y + + ++ + G LA++ + +
Sbjct: 376 LTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSG 435
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
M+ +S + + N+Y G ++ K+ K+M +D+K
Sbjct: 436 MKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM-KTDVK 472
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 1/161 (0%)
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
P +V WN++I G+ +AL ++ E + + +PD T S++ ACA L D E+ K
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
+H +L M G + + GNALIDMY + +++A +VF M RDV +W++LI G +
Sbjct: 195 SIHDRVLXMGFG-SDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 253
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
G+ E++ ++ + L V P T VL AC G VEEG
Sbjct: 254 GYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 294
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 154/355 (43%), Gaps = 17/355 (4%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
K++ + GFNS+ L+ Y+ G + + K+F + D +NTII
Sbjct: 495 KELHCDLAKMGFNSNIVVSNTLVDMYAKC----GEMGDSLKVFENMKARDIITWNTIIAS 550
Query: 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN 139
S++ + + ++M + P+ T +L C+ L + G +HG I K G E +
Sbjct: 551 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD 610
Query: 140 RFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP- 198
V N LI ++ CG L + +F DVV W++L + GE A F EM
Sbjct: 611 VPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEA 670
Query: 199 ---VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
V D V++ +I + G +E+ F+ + K + V+ +++ AL
Sbjct: 671 AGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLD 730
Query: 256 FEE--MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM----TSGVAKVLHGNA 309
E + S+ +PD +LL+AC GD E+ ++V ++++ T V + A
Sbjct: 731 KAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYA 790
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
+ + + SI ++I+ G++ +W + + G + F E+ +L
Sbjct: 791 ALGKWDQVRSIRKSIKA-RGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKL 844
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 304 VLHGNALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
V+ LI YA + VF L +V W+++I L +G E+++++ E Q
Sbjct: 107 VIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQ 166
Query: 363 RLKVRPTEITFVGVLVACS 381
R++++P TF V+ AC+
Sbjct: 167 RIRLQPDTYTFPSVINACA 185
>gi|413937828|gb|AFW72379.1| hypothetical protein ZEAMMB73_412000 [Zea mays]
Length = 471
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/436 (35%), Positives = 227/436 (52%), Gaps = 80/436 (18%)
Query: 88 DAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL 146
DA+ L+ +M + PN+F + VL+A + R + +H K GF
Sbjct: 41 DALALFLRMLRHGRPSPNQFVYPLVLRAACAVDVR-IVRSIHSHACKSGF---------- 89
Query: 147 IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWN 206
CG + DV+ +SL Y+R ++ AR LFD + R +VSW
Sbjct: 90 ------CG------------YEYDVIR-TSLLDCYSRHAMMADARKLFDGLTERSVVSWT 130
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK---QALEMFEEMRSVG 263
+++GYA+ G++ A LF + +RDV +WNA+I+G C N+ +A+ +F M G
Sbjct: 131 ALVSGYARAGKIGDAIMLFERMTERDVAAWNAIITG---CSQNRLFAEAVGIFGRMVGTG 187
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIER 322
RP+ T+ +L+AC LG L++GK +HC G + VL N LIDMY KCG++E
Sbjct: 188 LRPNATTISCVLSACGHLGMLKIGKLIHCCAWRTCVGFGSSVL--NGLIDMYGKCGNLEG 245
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A +F + DR ++ W++LI LA HG ++ +I++F EM+ V P ITFVG+L AC+H
Sbjct: 246 ATWIFYEVSDRSLTAWNSLINCLALHGHSKCAISVFNEMRGEGVEPDVITFVGLLNACTH 305
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
G V+EG KYF+LM+ E+ IEP I HYG
Sbjct: 306 GGFVDEGIKYFELMQHEHGIEPEIEHYGCIINLLGRAGRFQDALNVISNMRIESDEVIWG 365
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
VH +VEL LA ++LL + + + V+L+N+Y+ G W V K RK M++ +
Sbjct: 366 SLLNACRVHRNVELAELAIRKLLELDPNNANYVVMLANVYSEGGLWEEVRKARKFMEEEN 425
Query: 464 I-KKQPGCSLIEADDK 478
I KK PGCS IE D K
Sbjct: 426 IGKKLPGCSWIEVDRK 441
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 12/235 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A +F ++TE D +N II G +Q++ +AV ++ +M ++PN T S VL
Sbjct: 140 GKIGDAIMLFERMTERDVAAWNAIITGCSQNRLFAEAVGIFGRMVGTGLRPNATTISCVL 199
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L +G +H + F V N LI + CG+L A+ +F + +
Sbjct: 200 SACGHLGMLKIGKLIHCCAWRTCVGFGSSVLNGLIDMYGKCGNLEGATWIFYEVSDRSLT 259
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
AW+SL A G A S+F+EM D++++ ++ G +++ + F +
Sbjct: 260 AWNSLINCLALHGHSKCAISVFNEMRGEGVEPDVITFVGLLNACTHGGFVDEGIKYFELM 319
Query: 229 PKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
++ + +I+ G + AL + MR D+V SLL AC
Sbjct: 320 QHEHGIEPEIEHYGCIINLLGRAGRFQDALNVISNMRI---ESDEVIWGSLLNAC 371
>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 219/422 (51%), Gaps = 79/422 (18%)
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF-EFNRFVRNSLIYFHANCGDLNTASV 161
P+ TF F+ +A RL + +H ++ G ++ +V NSL++ +A C
Sbjct: 58 PSHLTFPFLGRAAARLASPRLALSLHAHPLRLGLLPWDLYVANSLVHMYAACA------- 110
Query: 162 LFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA 221
L D +AR LFDE+P +LVSWN ++ GYAK ++ A
Sbjct: 111 LPD------------------------LARRLFDEIPRPNLVSWNALLDGYAKCRDLLSA 146
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE----RPDDVTMLSLLTA 277
+FN +P+RDVVSW+AMI G V CG +++AL +FE M + G R +DVTM+S+L A
Sbjct: 147 RCVFNRMPQRDVVSWSAMIDGCVKCGEHREALALFEMMEAAGAGNGVRANDVTMVSVLGA 206
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF--LGMRDRDV 335
CA LGDL G+++H L + + +L+DMYAKCG+I A+EVF + + DV
Sbjct: 207 CAHLGDLGRGRQMH-RYLQEHGFLLNLRLATSLVDMYAKCGAISEALEVFRAVPVTTTDV 265
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
W+ +IGGLA HG + ES+ +F+EMQ V P EIT++ +L AC H G V E + F+
Sbjct: 266 LIWNAVIGGLAVHGLSMESVEIFQEMQNSGVVPDEITYLVLLSACVHGGLVGEAWRLFRS 325
Query: 396 MRDEYNIEPNIRHYG---------------------------------------VHGDVE 416
+ + + P++ HY +HG VE
Sbjct: 326 LEVQ-GLRPHVEHYACLVDVLGRAGHLEEAYGVVKSMPMEPNVSVLGALLNACHLHGWVE 384
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
LG + ++L+ ++ D G Y+ LSNIYA W +K RK+M++ +KK PG S I+
Sbjct: 385 LGEVVGRQLVQLQPDHDGRYIGLSNIYAIARRWQEAKKARKVMEERGVKKIPGFSEIDVG 444
Query: 477 DK 478
+
Sbjct: 445 GR 446
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 156/498 (31%), Positives = 243/498 (48%), Gaps = 82/498 (16%)
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+ P F YN IR A S+ P ++ L+ M + +I+P+ +T F+L A R ++
Sbjct: 114 SAPTAFSYNVAIRFFASSR-PHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLAR 172
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR-- 183
H + K G + +SLI ++ D A +FDG DVV+W+++ Y R
Sbjct: 173 AAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVG 232
Query: 184 -RGELS-MARSLFDEMPVR-----------------DLV--------SWNV--------- 207
GE+ M R + E V DLV SW+
Sbjct: 233 MNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVG 292
Query: 208 --MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
++ Y K GE+ +A +F+ + +D+V+WNAMI+GY GM+ +A+ +F MR G R
Sbjct: 293 SALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMR 352
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD +T+ +L+AC+ +G LE+G ++ + V G AL+DMYAKCG +++AIE
Sbjct: 353 PDKITLAGVLSACSAVGALELGSELD-GYASRRGLYSNVYVGTALVDMYAKCGDLDKAIE 411
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHAG 384
VF M ++V++W+ LI GLAF+G +E+I F+ M+ + ++P +ITF+GVL AC HAG
Sbjct: 412 VFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAG 471
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYGVHGD------------------------------ 414
V++GK++F + E+ I P I HY D
Sbjct: 472 LVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGAL 531
Query: 415 ---------VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
VE+G R++ + S +YV+ S IYAS + K+R LM + +
Sbjct: 532 LAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVN 591
Query: 466 KQPGCSLIEADDKAFLQY 483
K PGCS +E K Y
Sbjct: 592 KTPGCSWVEVSGKVLEFY 609
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 147/500 (29%), Positives = 238/500 (47%), Gaps = 81/500 (16%)
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
++F K+ D +NT+I G +Q +++ L+ +M KP+ T + +L+AC L
Sbjct: 272 RIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLG 330
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
G VH ++ G+E + N LI +A CG+L + +F G D V+W+S+
Sbjct: 331 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 390
Query: 180 GYARRGELSMARSLFDEMPV--------------------------------------RD 201
Y + G A LF M +
Sbjct: 391 VYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSN 450
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
+V N ++ YAK GEM + ++F + RD+++WN +I+ V L M MR+
Sbjct: 451 IVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRT 510
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSI 320
G PD TMLS+L C+ L GK++H + + G+ + V GN LI+MY+KCGS+
Sbjct: 511 EGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL--GLESDVPVGNVLIEMYSKCGSL 568
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ +VF M+ +DV TW+ LI +G ++++ F EM+ + P + FV ++ AC
Sbjct: 569 RNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFAC 628
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
SH+G VEEG YF M+ +Y IEP I HY
Sbjct: 629 SHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSI 688
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+ GD E+ ++R++ + D++G YVL+SNIYA+ G+W++V +RK +
Sbjct: 689 WGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKA 748
Query: 462 SDIKKQPGCSLIEADDKAFL 481
+KK PGCS +E +K ++
Sbjct: 749 RGLKKDPGCSWMEIQNKVYV 768
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 190/363 (52%), Gaps = 44/363 (12%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ +++N+IIR + +A+ LY++ ++ ++P+ +TF V+ AC LL M +H
Sbjct: 79 NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG--- 185
+++ GF + ++ N+LI + DL+ A +F+ DVV+W+SL +GY G
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198
Query: 186 -----------------------------------ELSMARSLFDEMPV-RDLVSWNVMI 209
E + L +++ + +D++ N ++
Sbjct: 199 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 258
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
+ Y K + +F+++ RD VSWN MI GY G+ ++++++F EM + +PD +
Sbjct: 259 SMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLL 317
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFL 328
T+ S+L AC LGDLE GK VH ++ TSG N LI+MYAKCG++ + EVF
Sbjct: 318 TITSILQACGHLGDLEFGKYVHDYMI--TSGYECDTTASNILINMYAKCGNLLASQEVFS 375
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
GM+ +D +W+++I +G +E++ +F+ M + V+P +T+V +L + G +
Sbjct: 376 GMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHL 434
Query: 389 GKK 391
GK+
Sbjct: 435 GKE 437
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/442 (27%), Positives = 200/442 (45%), Gaps = 62/442 (14%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTI 76
K I V GF SD +Y G+ +I ++ A K+F ++ D +N++
Sbjct: 135 KSIHDRVLDMGFGSD-------LYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSL 187
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
I G + +A+ +Y + + P+ +T S VL+AC L G +HG I K G
Sbjct: 188 ISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGI 247
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
+ + V N L+ + L +FD D V+W+++ GY++ G + LF E
Sbjct: 248 KKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFME 307
Query: 197 MPVR--------------------------------------DLVSWNVMITGYAKQGEM 218
M + D + N++I YAK G +
Sbjct: 308 MVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNL 367
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
+ E+F+ + +D VSWN+MI+ Y+ G +A+++F+ M++ +PD VT + LL+
Sbjct: 368 LASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSVTYVMLLSMS 426
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
LGDL +GK++HC L M + ++ N L+DMYAKCG + +++VF M+ RD+ TW
Sbjct: 427 TQLGDLHLGKELHCDLAKMGFN-SNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITW 485
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+T+I + M M+ V P T + +L CS +GK+
Sbjct: 486 NTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE------- 538
Query: 399 EYNIEPNIRHYGVHGDVELGRL 420
I I G+ DV +G +
Sbjct: 539 ---IHGCIFKLGLESDVPVGNV 557
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 170/338 (50%), Gaps = 14/338 (4%)
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKM----DVVAWSSLTAGYARRGELSMARSLF 194
N ++ NS+I + G + A L+ ++ D + S+ A + MA+S+
Sbjct: 79 NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138
Query: 195 DEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
D + DL N +I Y + +++KA ++F E+P RDVVSWN++ISGY G
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ALE++ R++G PD TM S+L AC LG +E G +H L++ V+ N L
Sbjct: 199 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIH-GLIEKIGIKKDVIVNNGL 257
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+ MY K + +F M RD +W+T+I G + G EESI +F EM + +P
Sbjct: 258 LSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDL 316
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLM-RDEYNIEPNIRHYGVHGDVELGR-LANKRLLN- 427
+T +L AC H G +E GK M Y + + ++ + G LA++ + +
Sbjct: 317 LTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSG 376
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
M+ +S + + N+Y G ++ K+ K+M +D+K
Sbjct: 377 MKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM-KTDVK 413
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
P +V WN++I G+ +AL ++ E + + +PD T S++ ACA L D E+ K
Sbjct: 76 PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
+H +LDM G + + GNALIDMY + +++A +VF M RDV +W++LI G +
Sbjct: 136 SIHDRVLDMGFG-SDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 194
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
G+ E++ ++ + L V P T VL AC G VEEG
Sbjct: 195 GYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 235
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 156/360 (43%), Gaps = 17/360 (4%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
+L K++ + GFNS+ L+ Y+ G + + K+F + D +N
Sbjct: 431 DLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKC----GEMGDSLKVFENMKARDIITWN 486
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
TII S++ + + ++M + P+ T +L C+ L + G +HG I K
Sbjct: 487 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 546
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
G E + V N LI ++ CG L + +F DVV W++L + GE A F
Sbjct: 547 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 606
Query: 195 DEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
EM V D V++ +I + G +E+ F+ + K + V+ +++
Sbjct: 607 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 666
Query: 251 QALEMFEE--MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM----TSGVAKV 304
AL E + S+ +PD +LL+AC GD E+ ++V ++++ T V
Sbjct: 667 SALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLV 726
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
+ A + + + SI ++I+ G++ +W + + G + F E+ +L
Sbjct: 727 SNIYAALGKWDQVRSIRKSIKA-RGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKL 785
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 304 VLHGNALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
V+ LI YA + VF L +V W+++I L +G E+++++ E Q
Sbjct: 48 VIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQ 107
Query: 363 RLKVRPTEITFVGVLVACS 381
R++++P TF V+ AC+
Sbjct: 108 RIRLQPDTYTFPSVINACA 126
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 161/553 (29%), Positives = 262/553 (47%), Gaps = 89/553 (16%)
Query: 9 SRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
S + + C L +++ + A + I GF S + L+ + + I ++K+F +
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKL--QEIEDSYKVFNTM 232
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
TE + +N +I G + LDA L+ +M + P+ TF V KA L N
Sbjct: 233 TEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAK 292
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD---AKMDVVAWSSLTAGYA 182
V G ++ G + N V +LI ++ CG L A +F+ + + W+++ +GY
Sbjct: 293 EVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNA-PWNAMISGYL 351
Query: 183 RRGELSMARSLFDEMPVRDL------------------------------------VSW- 205
R G A LF +M D+ V++
Sbjct: 352 RSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYV 411
Query: 206 ---NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
N + YAK G +E ++FN + RD++SW ++++ Y C +A+E+F MR+
Sbjct: 412 SISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAE 471
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G P+ T S+L +CA+L LE G++VH + + + K + +AL+DMYAKCG +
Sbjct: 472 GIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIE-SALVDMYAKCGCLGD 530
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A +VF + + D +W+ +I G A HG ++++ +FR M +L V P +TF+ VL ACSH
Sbjct: 531 AKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSH 590
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
G VEEG +YFKLM+ Y + P + HY
Sbjct: 591 GGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQ 650
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
VHG+VELG LA +++L+ + + S YVLLSN Y G + +R +M +
Sbjct: 651 TLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQG 710
Query: 464 IKKQPGCSLIEAD 476
+KK+PGCS I +
Sbjct: 711 VKKEPGCSWISVN 723
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/429 (28%), Positives = 208/429 (48%), Gaps = 52/429 (12%)
Query: 11 LWKKCTNLRTLKQIQALVTINGF--NSDSSALRELIYSGSVVIPGA----INYAHKMFVK 64
L + C + R LKQ + T++GF S S L+ V + I+ A ++F +
Sbjct: 74 LLRDCVDARFLKQAK---TVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+++ +TF + +I G A++ LD + +M+ I P++F +S +L+ C L +G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
VH +IV GF + FV +L+ +A ++ + +F+ +++VV+W+++ G+
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250
Query: 185 GELSMARSLFDEM------P--------------VRDLVSWNVMITGYA----------- 213
A LF M P +RD V+ ++GYA
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRD-VNKAKEVSGYALELGVDSNTLV 309
Query: 214 ---------KQGEMEKANELFNE--VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
K G +++A +FN + R WNAMISGY+ G N++ALE+F +M
Sbjct: 310 GTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQN 369
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
D T S+ A A L L +GKKVH + V V NA+ + YAKCGS+E
Sbjct: 370 DIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLED 429
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
+VF M DRD+ +W++L+ + +++I +F M+ + P + TF VLV+C++
Sbjct: 430 VRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCAN 489
Query: 383 AGKVEEGKK 391
+E G++
Sbjct: 490 LCLLEYGQQ 498
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 149/469 (31%), Positives = 227/469 (48%), Gaps = 79/469 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+ ++A ++F ++ E + R S A+ ++ M + P+ + L
Sbjct: 60 GSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVALAVAL 119
Query: 113 KAC----TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168
AC + RN G +H IV G E + FV LI + CG
Sbjct: 120 GACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECG-------------- 165
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+L+++R +FD+MP R ++WN M+ YA+ G+++ A ELF +
Sbjct: 166 -----------------KLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAM 208
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEM---RSVGERPDDVTMLSLLTACADLGDLE 285
P+RDVVSWN +++GY + G ++AL +F +M S P+ TM ++L ACA G LE
Sbjct: 209 PRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLE 268
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTLIGG 344
G VH + L LIDMY KCGSI+ A++VF R RD+ +W+T+I G
Sbjct: 269 TGIWVHAYIERNRMNDDGYLD-RCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICG 327
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
LA HG A +++ MF MQ + P ++T VGVL AC+H G V+EG YF M ++ I P
Sbjct: 328 LAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITP 387
Query: 405 NIRHYG---------------------------------------VHGDVELGRLANKRL 425
I HYG VHG++ELG++A + L
Sbjct: 388 KIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEEL 447
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ D+ V+LS++YA +W + + R+ M+ +KK PGCS IE
Sbjct: 448 TRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIE 496
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 101/223 (45%), Gaps = 41/223 (18%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
+++ YA G + A LF+E+P++ +V AM +V G QA+ +F +M + G
Sbjct: 50 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 109
Query: 266 PDDVTMLSLLTACADLGDLEV----GKKVHCTLLDMTSGVA------------------- 302
PD+V + L AC G GKK+H L +TSG+
Sbjct: 110 PDNVALAVALGACHGAGSWTARRNPGKKIHA--LIVTSGIEPDVFVSTELIRVYGECGKL 167
Query: 303 -------------KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
+ NA++ YA+ G ++ A E+FL M RDV +W+T++ G G
Sbjct: 168 AVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAG 227
Query: 350 FAEESIAMFREM---QRLKVRPTEITFVGVLVACSHAGKVEEG 389
E++ +FR+M V P T +L AC+ AG +E G
Sbjct: 228 RCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETG 270
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 228/463 (49%), Gaps = 111/463 (23%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRG-----SAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSF 110
YA +F +I EP F YN++IR S+ + D LY +M S PN FT +F
Sbjct: 76 YARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAF 135
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
VLKACT L G +H + +G E + +V+ L+ +A C
Sbjct: 136 VLKACTAL---GEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCE---------------- 176
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
E+++AR++FD M V
Sbjct: 177 ---------------EVALARNVFDGM------------------------------VED 191
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
+++V+W++MI GY GM +AL +F +M++VG PD+VTM+S+++ACA G L++GK V
Sbjct: 192 KNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWV 251
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
H +D + ALIDMYAKCG IERA VF M +RD WS +I GLA HG
Sbjct: 252 H-AFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGL 310
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
AE+++ +F M +LKVRP +TFVGVL AC+H+G V++G++Y+ M+ E IE ++ +YG
Sbjct: 311 AEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQ-ELGIEASMENYG 369
Query: 411 VHGD---------------------------------------VELGRLANKRLLNMRKD 431
D +++ LA++RL +
Sbjct: 370 CMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFELEPQ 429
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+YVLLSN+YA +W+RV +RK M D+++ GCS IE
Sbjct: 430 NPENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIE 472
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A +F + E DT ++ +I G A DA+ L+++M + ++PN TF VL
Sbjct: 278 GLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVL 337
Query: 113 KACT 116
AC
Sbjct: 338 SACA 341
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 174/310 (56%), Gaps = 44/310 (14%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE--- 264
+I+ Y+ G ++ A LF +P+R+V+SW+ MI+GYV CG K+AL +F EM+ +G
Sbjct: 105 LISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDV 164
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
RP++ TM +L AC LG LE GK H +D V+ G ALIDMYAKCGS+E+A
Sbjct: 165 RPNEFTMSGVLAACGRLGALEHGKWAH-AYIDKCGMPVDVVLGTALIDMYAKCGSVEKAT 223
Query: 325 EVFLGM-RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
VF + ++DV WS +I GLA HG AEE + +F +M VRP +TF+ V AC H
Sbjct: 224 WVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHG 283
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G V EGK Y + M ++Y+I P I+HYG
Sbjct: 284 GLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGA 343
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
+HGD+E LA K+L+ + SG YVLLSN+YA RG W V VR LM+ I
Sbjct: 344 LLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGI 403
Query: 465 KKQPGCSLIE 474
KK PGCSLIE
Sbjct: 404 KKVPGCSLIE 413
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 170/351 (48%), Gaps = 53/351 (15%)
Query: 69 DTFMYNTIIRGS----AQSQNPLDA-VFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
++F++NT+IR AQ P + + ++ +M ++P+ TF F+L++ ++
Sbjct: 23 ESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHL 82
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G VH +I+++G + FV+ SLI +++ G ++ A LF + +V++WS + GY R
Sbjct: 83 GRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVR 142
Query: 184 RGELSMARSLFDE-------------------------------------------MPVR 200
G+ A +LF E MPV
Sbjct: 143 CGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPV- 201
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEV-PKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
D+V +I YAK G +EKA +F+ + P +DV++W+AMISG + G+ ++ + +F +M
Sbjct: 202 DVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKM 261
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
+ G RP+ VT L++ AC G + GK + + S + + H ++D+Y + G
Sbjct: 262 INQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGR 321
Query: 320 IERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
I+ A V M + DV W L+ G HG E +++ +++ PT
Sbjct: 322 IKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKL--IELEPT 370
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Query: 229 PKRDVVSWNAMISGYVLC-----GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
P + WN +I +V G + +F MR G +PD T LL + A
Sbjct: 20 PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79
Query: 284 LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIG 343
L +G+ VH +L + + +LI MY+ G ++ A +F M +R+V +WS +I
Sbjct: 80 LHLGRSVHAQILRFGLAIDPFVQ-TSLISMYSSSGLVDMARNLFAVMPERNVISWSCMIN 138
Query: 344 GLAFHGFAEESIAMFREMQRL---KVRPTEITFVGVLVACSHAGKVEEGK 390
G G +E++A+FREMQ L VRP E T GVL AC G +E GK
Sbjct: 139 GYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGK 188
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 141/320 (44%), Gaps = 34/320 (10%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
+ + A + G D LI YS S G ++ A +F + E + ++ +I G
Sbjct: 84 RSVHAQILRFGLAIDPFVQTSLISMYSSS----GLVDMARNLFAVMPERNVISWSCMING 139
Query: 80 SAQSQNPLDAVFLYTQMEKCSI---KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
+ +A+ L+ +M+ + +PN+FT S VL AC RL G H I K G
Sbjct: 140 YVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGM 199
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKMDVVAWSSLTAGYARRGELSMARSLFD 195
+ + +LI +A CG + A+ +F DV+AWS++ +G A G LF
Sbjct: 200 PVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFS 259
Query: 196 EMPVRDLVSWNVMI----------TGYAKQGE--MEKANELFNEVPKRDVVSWNAMISGY 243
+M + V N + G +G+ + + E ++ +P + + M+ Y
Sbjct: 260 KM-INQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPT--IQHYGCMVDLY 316
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM--TSGV 301
G K+A + ++S+ PD + +LL+ GD+E + L+++ T+
Sbjct: 317 GRAGRIKEA---WNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSG 373
Query: 302 AKVLHGNALIDMYAKCGSIE 321
A VL L ++YAK G E
Sbjct: 374 AYVL----LSNVYAKRGRWE 389
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 148/512 (28%), Positives = 239/512 (46%), Gaps = 72/512 (14%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
NR L +C +R L++I A +G + + ++ I+ S G A ++F
Sbjct: 19 NRSVCHHLLTQCKTIRELQRIHAQALTHGLHPNQQSISCKIFR-SYAEFGRPADAGRLFD 77
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
+I PD + +++ + + A+ +++ +P+ F L A L + +
Sbjct: 78 EIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRI 137
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G VHG I + G + V N+L+ + CG A
Sbjct: 138 GSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPA------------------------ 173
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
R++FD M V+D V+W M+ GY K ++ A F ++P + VSW A+I+G+
Sbjct: 174 -------RTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGH 226
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
V QALE+F +M G RP+ +T++ +L+ACAD+G L++G+ +H ++
Sbjct: 227 VQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIH-GYGSKSNATTN 285
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
++ NAL+DMYAK GSI A VF ++ +D TW+T+I G +++ +F +M R
Sbjct: 286 IIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLR 345
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
+ P +TFV VL ACSHAG ++EG++ F MR+ Y+I+P + HYG
Sbjct: 346 SGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLE 405
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
HG+ L +A K ++ + G YVLL N+YA
Sbjct: 406 EAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGKEIIKREPGDDGVYVLLWNMYA 465
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
W +RK M I K+PGCS IE D
Sbjct: 466 LSNRWKEALDMRKQMLSRKIYKKPGCSWIEVD 497
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 159/539 (29%), Positives = 250/539 (46%), Gaps = 112/539 (20%)
Query: 19 RTLKQIQALVTIN-GFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
+TLK++ + + I+ + + S +L+ + + G Y +F +IT+ + +N +I
Sbjct: 52 KTLKKLHSKILIDQNLHPNPSLGIKLMRAYAAC--GEPCYTRHIFDEITDKNVVFFNVMI 109
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
R + DA+ ++ M P+ +T+ VLKAC+ +G +HG +VK G +
Sbjct: 110 RSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLD 169
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
N ++ N L+ + C W L AR + DEM
Sbjct: 170 MNLYIGNGLVSMYGKC-------------------KW------------LDAARRVLDEM 198
Query: 198 PVRDLVSWNVMITGYAKQG----------EMEK--------------------------- 220
P RD+VSWN M+ GYA+ G EME
Sbjct: 199 PGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLY 258
Query: 221 ANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
++F ++ ++ ++SWN MI+ YV M +A++++ +M+ G PD V++ S+L AC D
Sbjct: 259 VKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGD 318
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
L +G+++H ++ +L NALIDMYAKCG ++ A VF M RDV +W++
Sbjct: 319 LSAAVLGRRIH-EYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTS 377
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
+I G ++++A+F++M+ P I FV VL ACSHAG V+EG+ F LM EY
Sbjct: 378 MISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA-EY 436
Query: 401 NIEPNIRHYG---------------------------------------VHGDVELGRLA 421
I P I HY V+ + + LA
Sbjct: 437 GITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLA 496
Query: 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
L + ++SG YVLLSNIYA G W VE VR +M+ IKK PG S +E +D +
Sbjct: 497 ADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVY 555
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 153/495 (30%), Positives = 244/495 (49%), Gaps = 78/495 (15%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAIN---YAHKMFVKITEPDTFMYNTII 77
L QI A + + + + L I + GA++ YA+ +F + P+ ++N++I
Sbjct: 25 LPQIHAHILRHHLHQSNQILSHFIS-----VCGALDKMGYANLVFHQTQNPNLLLFNSMI 79
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
+G + +++ L++QM+ I P++FTF+ +LK+C+ + +G VHG ++ GFE
Sbjct: 80 KGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFE 139
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+R +I + +CG + A +FD DV+ W+ + G+ + G++ M LF +M
Sbjct: 140 RFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQM 199
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
R +VSWN MI G + G + +ALE+F
Sbjct: 200 RDRSVVSWNSMIAGLEQSGR-------------------------------DGEALELFR 228
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
EM G PDD T++++L CA LG ++VG+ +H + GN+L+D Y KC
Sbjct: 229 EMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKC 288
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
G +E A VF M ++V +W+ +I GL F+G E +F EM VRP + TFVGVL
Sbjct: 289 GILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVL 348
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH------------------------- 412
C+HAG VE G+ F M ++ +EP + H+G
Sbjct: 349 SCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPN 408
Query: 413 --------------GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
GDV+ A K L+ + SG+YVLLSN+YA G+W+ VEKVR L
Sbjct: 409 AVLWGSLLSAYRTIGDVKHAECAVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVRAL 468
Query: 459 MDDSDIKKQPGCSLI 473
M + +I+K PG S++
Sbjct: 469 MKEKNIRKNPGQSMV 483
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 152/517 (29%), Positives = 247/517 (47%), Gaps = 84/517 (16%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
R L KC N+ LKQ A V +G ++ + L L+ + G++++A K+F I
Sbjct: 7 RCLLLLHKCINMNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQ 66
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
P ++NT+I+ L+A+ +++ + + I P+ +T +VLKA R+ ++G
Sbjct: 67 HPTICIFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGES 126
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H +K G N FV NSL+ + + ++ +A +FD ++ V+W+ + GYA G+
Sbjct: 127 IHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGD 186
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+ AR LFD V+D W MI+GY + N F
Sbjct: 187 VDTARELFDMATVKDTGIWGAMISGYVQ-------NNCF--------------------- 218
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL----LDMTSGVA 302
K+ L MF M+ PD+ ++++L+ACA +G L+ G +H L L +T V+
Sbjct: 219 ---KEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVS 275
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
LIDMYAKCG ++ A +F M RD W+ +I G+A G E +I +F EM+
Sbjct: 276 -----TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEME 330
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
+ ++P ITF+ V ACS++G V+EG + + M + IEP HYG
Sbjct: 331 KAGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRF 390
Query: 412 --------------------------------HGDVELGRLANKRLLNMRKDESGDYVLL 439
HG + +A +RL + + SG YVLL
Sbjct: 391 EEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLER-HSGAYVLL 449
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
SN+YA+ G+ ++VR +M ++K PGCS I+ +
Sbjct: 450 SNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVN 486
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 153/500 (30%), Positives = 240/500 (48%), Gaps = 90/500 (18%)
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P F YN +R A S P A+ L+ +M + +++P+ +T F+L A R
Sbjct: 80 PTAFSYNVTLRFFA-STRPRTALRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFARSA 138
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H + + G + + +SL+ ++N GD A +FDG + DVV+W+++ Y R G
Sbjct: 139 HALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGMA 198
Query: 188 S----MARSLFDEMPV-----------------------RDLVSW-------------NV 207
+ M R + DE V R L W +
Sbjct: 199 ADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVGSA 258
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
++ Y K GEM +A +F+ + +DVV+WNAMI+GY GM+K+A+ +F MR G PD
Sbjct: 259 LVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPD 318
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG----VAKVLHGNALIDMYAKCGSIERA 323
+T++ +L+ACA +G LE+G T LD + V G AL+DMY+KCG +++A
Sbjct: 319 KITLVGVLSACAAVGALELG-----TELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKA 373
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSH 382
++VF + ++ +TW+ LI GLAF+G E+I F M+ + +RP +ITF+GVL AC H
Sbjct: 374 VQVFGKLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVH 433
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGD---------------------------- 414
AG +++G+++F + E+ I P I HY D
Sbjct: 434 AGLLKDGRRWFNSLTSEFQIIPKIEHYSCMVDLLARAGHLEEAWDFVEKIPGKADAVMLG 493
Query: 415 -----------VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
VE+ R++ + S +YV+ S IYAS + K+R LM +
Sbjct: 494 ALLAACRKCKNVEVSERVINRIMQLEPSNSWNYVVSSKIYASSDRLDDSAKMRGLMRERG 553
Query: 464 IKKQPGCSLIEADDKAFLQY 483
+ K PGCS +E K Y
Sbjct: 554 VSKIPGCSWVEVSGKVLEFY 573
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 164/549 (29%), Positives = 258/549 (46%), Gaps = 113/549 (20%)
Query: 13 KKCTNLRTLK---QIQALVTINGFNSDSSALRELIY------------------------ 45
K C L LK Q+ + +++GF+SDS L++
Sbjct: 122 KACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVV 181
Query: 46 SGSVVIP-----GAINYAHKMFVKI----TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM 96
S S ++ G ++ A ++F ++ +P+ +N +I G S +AV ++ M
Sbjct: 182 SWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241
Query: 97 EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156
+P+ T S VL A L MG +HG ++K G ++ V ++LI + C
Sbjct: 242 HLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKC--- 298
Query: 157 NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG 216
S T+ E+S +FD+M D+ S N I G ++ G
Sbjct: 299 -------------------SCTS------EMS---QVFDQMDHMDVGSCNAFIFGLSRNG 330
Query: 217 EMEKANELFNEVPKR----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
++E + LF ++ + +VVSW +MI+ G + +ALE+F EM+ G +P+ VT+
Sbjct: 331 QVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIP 390
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMR 331
LL AC ++ L GK HC + G++ V G+ALIDMYAKCG I+ + F G+
Sbjct: 391 CLLPACGNIAALMHGKAAHC--FSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIP 448
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+++ W+ +I G A HG A+E++ +F MQR +P I+F VL ACS +G EEG
Sbjct: 449 TKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSY 508
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
YF M +Y IE + HY VH
Sbjct: 509 YFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVH 568
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
+V LG +A ++L + G+Y+LLSNIYAS+G WN V +VR +M + ++K PGCS
Sbjct: 569 NNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSW 628
Query: 473 IEADDKAFL 481
IE +K +
Sbjct: 629 IEVKNKVHM 637
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 164/345 (47%), Gaps = 37/345 (10%)
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+ EP+ F ++T+I ++ A+ ++QM + P+ +KAC L
Sbjct: 74 VPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPA 133
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
VHG GF+ + FV++SL++ + C + A +FD + DVV+WS+L A YAR+
Sbjct: 134 RQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQ 193
Query: 185 GELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
G + A+ LF EM +L+SWN MI G+ G L++E
Sbjct: 194 GCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSG-------LYSE------------- 233
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
A+ MF +M G PD T+ S+L A DL DL +G +H ++
Sbjct: 234 -----------AVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLV 282
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
K + +ALIDMY KC +VF M DV + + I GL+ +G E S+ +FR+
Sbjct: 283 SDKCV-SSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQ 341
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
++ + +++ ++ CS G+ E + F+ M+ ++PN
Sbjct: 342 LKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIA-GVKPN 385
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 15/193 (7%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+++ YA A + + VP+ +V S++ +I + AL F +M + G PD
Sbjct: 54 LLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPD 113
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV-------LHGNALIDMYAKCGSI 320
+ + S + ACA L L+ ++VH G+A V ++L+ MY KC I
Sbjct: 114 NRVLPSAVKACAGLSALKPARQVH--------GIASVSGFDSDSFVQSSLVHMYIKCNQI 165
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
A VF M + DV +WS L+ A G +E+ +F EM V+P I++ G++
Sbjct: 166 RDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGF 225
Query: 381 SHAGKVEEGKKYF 393
+H+G E F
Sbjct: 226 NHSGLYSEAVLMF 238
>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 553
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 142/464 (30%), Positives = 239/464 (51%), Gaps = 56/464 (12%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A ++F + + +N+++ G + LDA Y + N +++ +L R
Sbjct: 58 ARRLFDDMPSRNVISWNSVVAG-CLAHGDLDAASAYFARAP---RRNVASWNAMLAGLVR 113
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L + + + G++ + N +++ A G++ A +FD + ++V+W+++
Sbjct: 114 LGRMDDAWALFGEMPQR----NVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAM 169
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN 237
GY AR LF+ MP +++V+ MITGY K G++E A LF+ +P +DV+SWN
Sbjct: 170 ITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWN 229
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC----T 293
AMI+GYV G ++A+++ M G +PD T++++LTAC+ L L G+ H T
Sbjct: 230 AMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKT 289
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+L+ ++ NAL+ MY+KCG++ + VF+ ++ +D+ +W+T+I A HG ++
Sbjct: 290 MLESSTSFC-----NALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQK 344
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
+IA+F EM+ + P +IT + +L AC H G+V + + F LM +Y I P+ HY
Sbjct: 345 AIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVV 404
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
HG+V+LG LA K L+ SG
Sbjct: 405 DILGRAGQLEKACSYIKKMPFEAERNVWGALLGASKTHGNVQLGELAAKMLVQSDSVSSG 464
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
YV+LSNIYA+ G W V +VR M + +KKQPG S E +K
Sbjct: 465 PYVMLSNIYAAAGMWGEVNRVRGQMKEKGVKKQPGYSWTEIANK 508
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 135/274 (49%), Gaps = 31/274 (11%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG-ELSMARSLFDEMPVRDL 202
N I A GD+ A +FD + DVV+W++L R G +L AR LFD+MP R++
Sbjct: 11 NQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNV 70
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
+SWN ++ G G+++ A+ F P+R+V SWNAM++G V G A +F EM
Sbjct: 71 ISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEM--- 127
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD--------MTSGVAK----------- 303
+ + V+ +++ A G++ ++V + + M +G +
Sbjct: 128 -PQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEARKLF 186
Query: 304 -------VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
V+ A+I Y K G +E A +F G+ +DV +W+ +I G +G EE++
Sbjct: 187 EAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMK 246
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ M R V+P T + +L ACS + +G+
Sbjct: 247 LHIIMFREGVKPDHATLIAILTACSALALLRQGR 280
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 93/190 (48%), Gaps = 4/190 (2%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F I D +N +I G + + +A+ L+ M + +KP+ T +L
Sbjct: 208 GDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAIL 267
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC+ L G H K E + N+L+ ++ CG++ + ++F D+V
Sbjct: 268 TACSALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIV 327
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNEV 228
+W+++ A YA+ G+ A +LF EM R L+ ++ M++ G + + ELF+ +
Sbjct: 328 SWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLM 387
Query: 229 PKRDVVSWNA 238
+ +S +A
Sbjct: 388 SSKYAISPSA 397
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 16/226 (7%)
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN-KQALEM 255
+ R LV N IT A+ G++ A +F+ +P+RDVVSWNA+++ G + A +
Sbjct: 2 LATRLLVRDNQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRL 61
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
F++M S + ++ S++ C GDL+ + V NA++
Sbjct: 62 FDDMPS----RNVISWNSVVAGCLAHGDLDAASAYFA-----RAPRRNVASWNAMLAGLV 112
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
+ G ++ A +F M R+V +++T++ GLA G + +F M + +++
Sbjct: 113 RLGRMDDAWALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNL----VSWAA 168
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGR 419
++ +E +K F+ M D+ + I Y GDVE R
Sbjct: 169 MITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESAR 214
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/432 (33%), Positives = 219/432 (50%), Gaps = 72/432 (16%)
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC--VHGKIVKYGFEFNRFVRNS 145
+A +T+M ++PN TF +L AC + F +HG KYG
Sbjct: 75 EAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYG---------- 124
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
L+T V+ G A +D+ Y++ +L AR +F + V++ VSW
Sbjct: 125 ----------LDTGHVMV-GTALIDM---------YSKCAQLGHARKVFYNLGVKNSVSW 164
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N M+ G+ + GE+E A +LF+E+P RD +SW A+I+G + G ++QALE F +M+ G
Sbjct: 165 NTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVA 224
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
D V+++++L ACADLG L +G VH ++ + N+LIDMY++CG IE A +
Sbjct: 225 ADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFK-DNIKISNSLIDMYSRCGCIEFARQ 283
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VF+ M R + +W+++I G A +GFA+ES+ F MQ+ +P +++ G L ACSHAG
Sbjct: 284 VFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGL 343
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYG----------------------------------- 410
V +G + F M+ + I P I HYG
Sbjct: 344 VNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLL 403
Query: 411 ----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
HGDV L K L + + YVLLSNIYA+ G+W+ VR+ M ++K
Sbjct: 404 AACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQK 463
Query: 467 QPGCSLIEADDK 478
+PG S +E D K
Sbjct: 464 KPGYSSVEIDGK 475
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 33/198 (16%)
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG-- 282
FN +V W + ++ Y G +A F MR G P+ +T ++LL+ACAD
Sbjct: 49 FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC------------------------- 317
+H V+ G ALIDMY+KC
Sbjct: 109 SFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML 168
Query: 318 ------GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
G IE AI++F M RD +W+ LI GL HG++E+++ F +MQR V +
Sbjct: 169 NGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYV 228
Query: 372 TFVGVLVACSHAGKVEEG 389
+ + VL AC+ G + G
Sbjct: 229 SIIAVLAACADLGALTLG 246
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 18/294 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A ++F ++ D + +I G + A+ + QM++ + + + VL
Sbjct: 175 GEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVL 234
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L +G VH ++ F+ N + NSLI ++ CG + A +F AK +V
Sbjct: 235 AACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLV 294
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+S+ G+A G + F M D VS+ +T + G + K ELF+ +
Sbjct: 295 SWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNM 354
Query: 229 PKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
++ + ++ Y G + AL M EEM +P++V + SLL AC GD
Sbjct: 355 KSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPM---KPNEVVLGSLLAACRTHGD 411
Query: 284 LEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+ + +++ H LD VL L ++YA G + A V M+ R V
Sbjct: 412 VNLAERLMKHLFKLDPEGDAYYVL----LSNIYAAIGKWDGANNVRRTMKARGV 461
>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 589
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 157/533 (29%), Positives = 260/533 (48%), Gaps = 92/533 (17%)
Query: 30 INGFNSDSSALRELIYSGSVVIPGAIN---------YAHKMFVKITEPDTFMYNTIIRGS 80
++G + ++AL+ + S +V IN +A +MF ++++ + ++ II G
Sbjct: 20 LHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRNLVSWSAIISGY 79
Query: 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
Q+ PL A+ L++QM I PN++ F+ V+ AC L + G VH + +K G
Sbjct: 80 DQTGQPLLALNLFSQMR---IVPNEYVFASVISACASLTALSQGLQVHAQSLKLGCVSVS 136
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM--- 197
FV N+LI + CG A ++ + ++ + V++++L AG+ + F M
Sbjct: 137 FVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQK 196
Query: 198 ---PVRDLVS------------W---------------------NVMITGYAKQGEMEKA 221
P R S W NV+IT Y+K +E+A
Sbjct: 197 GFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEA 256
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVTMLSLLTACAD 280
++F + ++D++SWN +++ C +++AL +F +M V +PDD T +L ACA
Sbjct: 257 EKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAG 316
Query: 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340
L + GK++H L+ T V NAL++MYAKCGSI+ + +VF DR++ +W+T
Sbjct: 317 LASIRHGKQIHGHLIR-TRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNT 375
Query: 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400
+I HG ++ F +M+ + + P +TFVG+L AC+HAG VEEG+ YF M + Y
Sbjct: 376 IIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAGLVEEGQVYFNSMEEAY 435
Query: 401 NIEPNIRHYG---------------------------------------VHGDVELGRLA 421
I PNI H+ +HGD+ +G
Sbjct: 436 GIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLPFGHDPIILGSLLSACRLHGDMVIGEHL 495
Query: 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+LL ++ + YVLLSN+YAS W V + K++ S +KK+PG SLI+
Sbjct: 496 ATQLLKLQPVTTSPYVLLSNLYASDEMWGGVAEAWKMLKYSGLKKEPGHSLID 548
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 153/319 (47%), Gaps = 40/319 (12%)
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
+L C ++ G +H +K G + V N +I ++ CG++ A +FD + +
Sbjct: 9 LLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRN 68
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPV------------------------------- 199
+V+WS++ +GY + G+ +A +LF +M +
Sbjct: 69 LVSWSAIISGYDQTGQPLLALNLFSQMRIVPNEYVFASVISACASLTALSQGLQVHAQSL 128
Query: 200 ------RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
VS N +I+ Y K G A + N + + + VS+NA+I+G+V ++ +
Sbjct: 129 KLGCVSVSFVS-NALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPEKGI 187
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
E F+ MR G PD T LL C D G ++HC ++ + + + GN +I M
Sbjct: 188 EAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFI-GNVIITM 246
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEIT 372
Y+K IE A +VF ++++D+ +W+TL+ F E ++ +FR+M + V+P + T
Sbjct: 247 YSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFT 306
Query: 373 FVGVLVACSHAGKVEEGKK 391
F GVL AC+ + GK+
Sbjct: 307 FAGVLAACAGLASIRHGKQ 325
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 148/529 (27%), Positives = 249/529 (47%), Gaps = 118/529 (22%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ +++N+IIR + +A+ LY++ ++ ++P+ +TF V+ AC LL M +H
Sbjct: 79 NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY------- 181
+++ GF + ++ N+LI + DL+ A +F+ DVV+W+SL +GY
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198
Query: 182 ----------------------------------ARRGELSMARSLFDEMPVR----DLV 203
G+L + + D M D
Sbjct: 199 EALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 258
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE------ 257
+ N++I YAK G + + E+F+ + +D VSWN+MI+ Y+ G +L++FE
Sbjct: 259 ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARD 318
Query: 258 -------------------------EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
MR+ G PD TMLS+L C+ L GK++H
Sbjct: 319 IITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHG 378
Query: 293 TLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ + G+ + V GN LI+MY+KCGS+ + +VF M+ +DV TW+ LI +G
Sbjct: 379 CIFKL--GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEG 436
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
++++ F EM+ + P + FV ++ ACSH+G VEEG YF M+ +Y IEP I HY
Sbjct: 437 KKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYAC 496
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+ GD E+ ++R++ + D+
Sbjct: 497 VVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDD 556
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFL 481
+G YVL+SNIYA+ G+W++V +RK + +KK PGCS +E +K ++
Sbjct: 557 TGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYV 605
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 12/246 (4%)
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
P +V WN++I G+ +AL ++ E + + +PD T S++ ACA L D E+ K
Sbjct: 76 PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
+H +LDM G + + GNALIDMY + +++A +VF M RDV +W++LI G +
Sbjct: 136 SIHDRVLDMGFG-SDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 194
Query: 349 GFAEE-------SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM-RDEY 400
G+ E SI +F EM + +P +T +L AC H G +E GK M Y
Sbjct: 195 GYWNEALEIYYQSIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGY 253
Query: 401 NIEPNIRHYGVHGDVELGR-LANKRLLN-MRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
+ + ++ + G LA++ + + M+ +S + + N+Y G+ KV +
Sbjct: 254 ECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFEN 313
Query: 459 MDDSDI 464
M DI
Sbjct: 314 MKARDI 319
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 304 VLHGNALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
V+ LI YA + VF L +V W+++I L +G E+++++ E Q
Sbjct: 48 VIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQ 107
Query: 363 RLKVRPTEITFVGVLVACS 381
R++++P TF V+ AC+
Sbjct: 108 RIRLQPDTYTFPSVINACA 126
>gi|449464466|ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
[Cucumis sativus]
Length = 1830
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 238/477 (49%), Gaps = 53/477 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + + +F +I + + + ++I G Q+ + + L+ +M ++ N FT ++
Sbjct: 1266 GQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALVESNPFTLGSII 1325
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A T+L + G VHG +K E + F+ + + + CG A +++D +D+V
Sbjct: 1326 NAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQTRDARMIYDELPTIDLV 1385
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVS--------------WNVMITGYAKQGEM 218
+W+ + GY + + + LF + DL+ N +I YAK +
Sbjct: 1386 SWTVMIVGYTQARQPNDGLRLFADEIRSDLLPNSALLQVFFQRVRFLNALIDMYAKCHTI 1445
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
A +F+ V ++DV++WN+MISGY G AL +F +MRS PD +T++S L+A
Sbjct: 1446 SDAYAIFHGVLEKDVITWNSMISGYAQNGSAYDALRLFNQMRSYSLAPDAITLVSTLSAS 1505
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
A LG ++VG +H + + + G AL++ YAKCG A VF M +++ TW
Sbjct: 1506 ATLGAIQVGSSLHAYSVKGGLFSSNLYIGTALLNFYAKCGDARSARMVFDSMGVKNIITW 1565
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
S +IGG G S+++F M + ++P E+ F VL ACS++G VEEG +YFK M
Sbjct: 1566 SAMIGGYGVQGDGSGSLSIFSNMLKEDLKPNEVIFTTVLSACSYSGMVEEGGRYFKSMIQ 1625
Query: 399 EYNIEPNIRHY---------------------------------------GVHGDVELGR 419
+YN P+++HY G++ +LG
Sbjct: 1626 DYNFVPSMKHYACMVDLLARSGKLDEALDFIKKMPVQRDVSLYGAFLHGCGLYSRFDLGE 1685
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ + +L + ++E+ YVL+SN+YAS G+W +V +VR LM + K PG SL+E +
Sbjct: 1686 VVVREMLQLHRNEACYYVLVSNLYASDGKWGQVNEVRDLMLQRGLNKVPGYSLVETN 1742
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 179/415 (43%), Gaps = 74/415 (17%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
N+ TL + L+ ++G + +L+ G G + A +F ++ PD + + +
Sbjct: 1132 NIDTLIKFHGLLIVHGLIGNLLCDTKLV--GVYGALGDVRSARMVFDQMPNPDFYAWKVM 1189
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
IR + +D + Y +M + + FS +LKAC+ L G VH +IVK G
Sbjct: 1190 IRWYFLNDLFVDVIPFYNRMRMSFRECDNIIFSIILKACSELREIVEGRKVHCQIVKVGG 1249
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
+ FV LI + CG + +S +F+ +VV+W+S+ AGY + LF+
Sbjct: 1250 P-DSFVMTGLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNR 1308
Query: 197 MPVRD-LVSWNVMITG----------------------------------------YAKQ 215
M RD LV N G Y K
Sbjct: 1309 M--RDALVESNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVKC 1366
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF-EEMRSVGERPDDVTMLSL 274
G+ A +++E+P D+VSW MI GY L +F +E+RS L
Sbjct: 1367 GQTRDARMIYDELPTIDLVSWTVMIVGYTQARQPNDGLRLFADEIRS-----------DL 1415
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD 334
L A LL + + L NALIDMYAKC +I A +F G+ ++D
Sbjct: 1416 LPNSA--------------LLQVFFQRVRFL--NALIDMYAKCHTISDAYAIFHGVLEKD 1459
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
V TW+++I G A +G A +++ +F +M+ + P IT V L A + G ++ G
Sbjct: 1460 VITWNSMISGYAQNGSAYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQVG 1514
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 94/183 (51%), Gaps = 2/183 (1%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
++ Y G++ A +F+++P D +W MI Y L + + + MR D
Sbjct: 1158 LVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLNDLFVDVIPFYNRMRMSFRECD 1217
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
++ +L AC++L ++ G+KVHC ++ + + V+ G LIDMY KCG +E + VF
Sbjct: 1218 NIIFSIILKACSELREIVEGRKVHCQIVKVGGPDSFVMTG--LIDMYGKCGQVECSSAVF 1275
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
+ D++V +W+++I G + AEE + +F M+ V T ++ A + +
Sbjct: 1276 EEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALVESNPFTLGSIINAFTKLRALH 1335
Query: 388 EGK 390
+GK
Sbjct: 1336 QGK 1338
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/432 (33%), Positives = 219/432 (50%), Gaps = 72/432 (16%)
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC--VHGKIVKYGFEFNRFVRNS 145
+A +T+M ++PN TF +L AC + F +HG KYG
Sbjct: 75 EAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYG---------- 124
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
L+T V+ G A +D+ Y++ +L AR +F + V++ VSW
Sbjct: 125 ----------LDTGHVMV-GTALIDM---------YSKCAQLGHARKVFYNLGVKNSVSW 164
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N M+ G+ + GE+E A +LF+E+P RD +SW A+I+G + G ++QALE F +M+ G
Sbjct: 165 NTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVA 224
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
D V+++++L ACADLG L +G VH ++ + N+LIDMY++CG IE A +
Sbjct: 225 ADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFK-DNIKISNSLIDMYSRCGCIEFARQ 283
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VF+ M R + +W+++I G A +GFA+ES+ F MQ+ +P +++ G L ACSHAG
Sbjct: 284 VFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGL 343
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYG----------------------------------- 410
V +G + F M+ + I P I HYG
Sbjct: 344 VNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLL 403
Query: 411 ----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
HGDV L K L + + YVLLSNIYA+ G+W+ VR+ M ++K
Sbjct: 404 AACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQK 463
Query: 467 QPGCSLIEADDK 478
+PG S +E D K
Sbjct: 464 KPGYSSVEIDGK 475
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 33/198 (16%)
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG-- 282
FN +V W + ++ Y G +A F MR G P+ +T ++LL+ACAD
Sbjct: 49 FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC------------------------- 317
+H V+ G ALIDMY+KC
Sbjct: 109 SFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML 168
Query: 318 ------GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
G IE AI++F M RD +W+ LI GL HG++E+++ F +MQR V +
Sbjct: 169 NGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYV 228
Query: 372 TFVGVLVACSHAGKVEEG 389
+ + VL AC+ G + G
Sbjct: 229 SIIAVLAACADLGALTLG 246
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 18/294 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A ++F ++ D + +I G + A+ + QM++ + + + VL
Sbjct: 175 GEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVL 234
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L +G VH ++ F+ N + NSLI ++ CG + A +F AK +V
Sbjct: 235 AACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLV 294
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+S+ G+A G + F M D VS+ +T + G + K ELF+ +
Sbjct: 295 SWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNM 354
Query: 229 PKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
++ + ++ Y G + AL M EEM +P++V + SLL AC GD
Sbjct: 355 KSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPM---KPNEVVLGSLLAACRTHGD 411
Query: 284 LEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+ + +++ H LD VL L ++YA G + A V M+ R V
Sbjct: 412 VNLAERLMKHLFKLDPEGDAYYVL----LSNIYAAIGKWDGANNVRRTMKARGV 461
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 150/494 (30%), Positives = 242/494 (48%), Gaps = 79/494 (15%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKAC 115
A K+F ++ E DT ++NT+I G +++ ++++ ++ + E C+ + + T +L A
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT-RLDTTTLLDILPAV 231
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
L +G +H K G + +V I ++ CG + AS LF + D+VA++
Sbjct: 232 AELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYN 291
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDL------------VSWNVMI-------------- 209
++ GY GE ++ SLF E+ + VS ++M+
Sbjct: 292 AMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFL 351
Query: 210 ----------TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
T Y+K E+E A +LF+E P++ + SWNAMISGY G+ + A+ +F EM
Sbjct: 352 SHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREM 411
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
++ P+ VT+ +L+ACA LG L +GK VH L+ T + + ALI MYAKCGS
Sbjct: 412 QNSEFSPNPVTITCILSACAQLGALSLGKWVH-DLVRSTDFESSIYVSTALIGMYAKCGS 470
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I A +F M ++ TW+T+I G HG +E++ +F EM + PT +TF+ VL A
Sbjct: 471 IAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYA 530
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSHAG V+EG + F M Y EP+++HY
Sbjct: 531 CSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPS 590
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+H D L R +++L + D G +VLLSNI+++ + + VR+
Sbjct: 591 VWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAK 650
Query: 461 DSDIKKQPGCSLIE 474
+ K PG +LIE
Sbjct: 651 KRKLAKAPGYTLIE 664
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/431 (25%), Positives = 210/431 (48%), Gaps = 53/431 (12%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L+K+ T++ L Q A + ++GF +D S L +L S + GAI YA +F+ + PD
Sbjct: 26 LFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDL--GAIYYARDIFLSVQRPDV 83
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F++N ++RG + +++P ++ ++ + K + +KPN T++F + A + G +HG
Sbjct: 84 FLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHG 143
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL-- 187
+ + G + + ++++ + + A +FD + D + W+++ +GY R+ E+
Sbjct: 144 QAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY-RKNEMYV 202
Query: 188 ---SMARSLFDE--------------------------MPVRDLV------SWNVMITG- 211
+ R L +E M + L S + ++TG
Sbjct: 203 ESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF 262
Query: 212 ---YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
Y+K G+++ A+ LF E + D+V++NAMI GY G + +L +F+E+ G +
Sbjct: 263 ISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKS 322
Query: 269 VTMLSLLTACADLGDLEV--GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
T++SL+ L + G + L TS AL +Y+K IE A ++
Sbjct: 323 STLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSV------STALTTVYSKLNEIESARKL 376
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F ++ + +W+ +I G +G E++I++FREMQ + P +T +L AC+ G +
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGAL 436
Query: 387 EEGKKYFKLMR 397
GK L+R
Sbjct: 437 SLGKWVHDLVR 447
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 12/252 (4%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I A K+F + E +N +I G Q+ DA+ L+ +M+ PN T + +L A
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSA 429
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C +L ++G VH + FE + +V +LI +A CG + A LFD K + V W
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTW 489
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVPK 230
+++ +GY G A ++F EM + V++ ++ + G +++ +E+FN +
Sbjct: 490 NTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIH 549
Query: 231 R-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
R V + ++ G ++AL+ E M +P +LL AC D
Sbjct: 550 RYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPI---QPGPSVWETLLGACRIHKDTN 606
Query: 286 VGKKVHCTLLDM 297
+ + V L ++
Sbjct: 607 LARTVSEKLFEL 618
>gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 145/402 (36%), Positives = 219/402 (54%), Gaps = 55/402 (13%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSS----ALRELIYSGSVVIPGAINYAHKMFVKI 65
R+ + C N+ LKQI AL+ + N D + L++ ++ G++ YA +F I
Sbjct: 3 RMIQHCKNINQLKQIHALI-LTSPNLDQKDHYFLISRLLFFAALSDSGSLAYAADIFHYI 61
Query: 66 TEPDTFMYNTIIRGSAQSQNP-------LDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
+P+ YN +IR A N A+ LY QM I P+ TF F+LK CTR
Sbjct: 62 KKPNLPFYNIMIRAYASKSNVDYDDARLCQALILYKQMLCNDISPDCLTFPFLLKECTRN 121
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
+ G +HG +K G + FV+NSLI F++ C
Sbjct: 122 VAIYGGRGIHGHAIKLGLYSDLFVQNSLISFYSACE------------------------ 157
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWN 237
+S +R LFDEM RD+VSWN MI GY + G+++++ LF ++ R+V++WN
Sbjct: 158 -------FVSNSRKLFDEMSNRDVVSWNSMIIGYLRSGDLDQSLNLFRKMKINRNVITWN 210
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGE--------RPDDVTMLSLLTACADLGDLEVGKK 289
++I+G+V G K+ALE F EM+ + + RPD +T+ S+L+ACA LG ++ GK
Sbjct: 211 SIITGFVQGGRPKEALEFFHEMQCLRDDDGINNKVRPDKITIASVLSACAHLGAIDHGKW 270
Query: 290 VHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
VH L SG+ ++ G AL+DMY KCG ++RA EVF M ++D W+ +I A +
Sbjct: 271 VHSYL--RRSGLECDMVIGTALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALN 328
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
GF +E+ MF EM+ V+P +TFVG+L AC+H+G VE G+
Sbjct: 329 GFGKEAFDMFNEMEAGGVKPNLVTFVGLLSACAHSGLVETGR 370
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 54/246 (21%)
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV-----------LCGMNK 250
L+S + + G + A ++F+ + K ++ +N MI Y LC
Sbjct: 35 LISRLLFFAALSDSGSLAYAADIFHYIKKPNLPFYNIMIRAYASKSNVDYDDARLC---- 90
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC---------------TLL 295
QAL ++++M PD +T LL C + G+ +H +L+
Sbjct: 91 QALILYKQMLCNDISPDCLTFPFLLKECTRNVAIYGGRGIHGHAIKLGLYSDLFVQNSLI 150
Query: 296 DMTSGVA---------------KVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWS 339
S V+ N++I Y + G +++++ +F M+ +R+V TW+
Sbjct: 151 SFYSACEFVSNSRKLFDEMSNRDVVSWNSMIIGYLRSGDLDQSLNLFRKMKINRNVITWN 210
Query: 340 TLIGGLAFHGFAEESIAMFREMQRL--------KVRPTEITFVGVLVACSHAGKVEEGKK 391
++I G G +E++ F EMQ L KVRP +IT VL AC+H G ++ GK
Sbjct: 211 SIITGFVQGGRPKEALEFFHEMQCLRDDDGINNKVRPDKITIASVLSACAHLGAIDHGKW 270
Query: 392 YFKLMR 397
+R
Sbjct: 271 VHSYLR 276
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 146/456 (32%), Positives = 233/456 (51%), Gaps = 78/456 (17%)
Query: 100 SIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTA 159
S++P + +S +L CT L G +H I FE + + N ++ +A CG L A
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159
Query: 160 SVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM---------------------- 197
LFD D+V+W+ L +GY++ G+ S A +LF +M
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219
Query: 198 PV----RDLVSWNV-------------MITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
P R L ++++ ++ YA+ M +A +FN + ++VVSWNA+I
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+G+ G + + +F +M G P T S+ TACA G LE GK VH ++ + G
Sbjct: 280 AGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIK-SGG 338
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
GN LIDMYAK GSI+ A +VF + +D+ +W+++I G A HG E++ +F +
Sbjct: 339 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 398
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR----------------------- 397
M + KV+P EITF+ VL ACSH+G ++EG+ YF+LM+
Sbjct: 399 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGR 458
Query: 398 --------DEYNIEPNIRHYG-------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+E I+P +G +H +++LG A +++ + +SG +VLLSNI
Sbjct: 459 LNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNI 518
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
YAS G + KVRK+M +S +KK+P CS +E +++
Sbjct: 519 YASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENE 554
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 120/435 (27%), Positives = 209/435 (48%), Gaps = 51/435 (11%)
Query: 9 SRLWKKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
S++ KCT LR LKQ I A + + F D L ++ G++ A +F K+
Sbjct: 109 SKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFIL--NMYAKCGSLEEAQDLFDKM 166
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
D + +I G +QS +A+ L+ +M +PN+FT S +LKA + G
Sbjct: 167 PTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGR 226
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H +KYG++ N V +SL+ +A + A V+F+ A +VV+W++L AG+AR+G
Sbjct: 227 QLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKG 286
Query: 186 ELSMARSLFDEM------PVRDLVS----------------W-----------------N 206
E LF +M P S W N
Sbjct: 287 EGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGN 346
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
+I YAK G ++ A ++F + K+D+VSWN++ISGY G+ +AL++FE+M +P
Sbjct: 347 TLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQP 406
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
+++T LS+LTAC+ G L+ G + + L+ A+V H ++D+ + G + A +
Sbjct: 407 NEITFLSVLTACSHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKF 465
Query: 327 FLGMRDRDVST-WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA--CSHA 383
M + + W L+G H + ++ Q ++ P + + VL++ + A
Sbjct: 466 IEEMPIKPTAAVWGALLGSCRMH--KNMDLGVYAAEQIFELDPHD-SGPHVLLSNIYASA 522
Query: 384 GKVEEGKKYFKLMRD 398
G++ + K K+M++
Sbjct: 523 GRLSDAAKVRKMMKE 537
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 159/363 (43%), Gaps = 34/363 (9%)
Query: 44 IYSGSVVIPGAINYAHK-----MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98
++ GS ++ +AH +F + + +N +I G A+ + L+ QM +
Sbjct: 241 VHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLR 300
Query: 99 CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158
+P FT+S V AC G VH ++K G + ++ N+LI +A G +
Sbjct: 301 QGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKD 360
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAK 214
A +F K D+V+W+S+ +GYA+ G + A LF++M + +++ ++T +
Sbjct: 361 AKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSH 420
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVL-------CGMNKQALEMFEEMRSVGERPD 267
G +++ F + K + A ++ +V G +A + EEM +P
Sbjct: 421 SGLLDEGQYYFELMKKHKI---EAQVAHHVTVVDLLGRAGRLNEANKFIEEMPI---KPT 474
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTL--LDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
+LL +C ++++G + LD VL L ++YA G + A +
Sbjct: 475 AAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVL----LSNIYASAGRLSDAAK 530
Query: 326 VFLGMRDRDVS-----TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVA 379
V M++ V +W + + ++S M E+QR+ + + +I +G +
Sbjct: 531 VRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPD 590
Query: 380 CSH 382
SH
Sbjct: 591 TSH 593
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 220/434 (50%), Gaps = 77/434 (17%)
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY--RNMGFCVHGKIVKYGFEFNRFVRNS 145
+AV ++ M I+PN TF +L AC +G+ +HG K G E
Sbjct: 39 EAVREFSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGYLLHGYACKLGLE-------- 90
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
+ V+ +++ Y++ G L AR +FD + ++ V+W
Sbjct: 91 ----------------------RSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTW 128
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N MI GY + G+++ A ++F+++P RD++SW AMI+G+V G +++AL F EM+ G
Sbjct: 129 NTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVN 188
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERA 323
PD V ++S + AC +LG L G VH +L D + V N+LID+Y +CG +E A
Sbjct: 189 PDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRV---SNSLIDLYCRCGCVEFA 245
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+VF M R V +W+++I G A +G A ES+ FR+MQR P +TF G L ACSH
Sbjct: 246 RQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHV 305
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV--ELGRLAN------------------- 422
G VEEG +YF++M+ +Y I P I HYG D+ GRL +
Sbjct: 306 GLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVIGS 365
Query: 423 ---------------KRLLNMRKD----ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
+RL+ D +YV+LSN+YA+ G+W K+R+ M
Sbjct: 366 LLAACRNHGNHTILAERLMKYITDLDVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLG 425
Query: 464 IKKQPGCSLIEADD 477
+KKQPG S IE DD
Sbjct: 426 LKKQPGYSSIEIDD 439
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 33/198 (16%)
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL--G 282
N+ +VSW + I+ G +A+ F +MR G P+ +T ++LL+AC + G
Sbjct: 13 LNQSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSG 72
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC------------------------- 317
+G +H + + V+ G A++ MY+K
Sbjct: 73 SEGLGYLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMI 132
Query: 318 ------GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
G ++ A++VF M DRD+ +W+ +I G GF EE++A FREMQ V P +
Sbjct: 133 DGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYV 192
Query: 372 TFVGVLVACSHAGKVEEG 389
+ + AC++ G + G
Sbjct: 193 AIISAVAACTNLGALSFG 210
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 129/286 (45%), Gaps = 25/286 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F K+ + D + +I G + +A+ + +M+ + P+ +
Sbjct: 139 GQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAV 198
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
ACT L + G VH ++ F N V NSLI + CG + A +FD K VV
Sbjct: 199 AACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV 258
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+S+ G+A G + + F +M D V++ +T + G +E+ + F ++
Sbjct: 259 SWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYF-QM 317
Query: 229 PKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
K D + + ++ Y G + A + E M +P++V + SLL AC + G
Sbjct: 318 MKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPM---KPNEVVIGSLLAACRNHG 374
Query: 283 DLEVGKK---VHCTLLDMTSGVAKVLHGNALI--DMYAKCGSIERA 323
+ + + + T LD+ S H N +I +MYA G E A
Sbjct: 375 NHTILAERLMKYITDLDVKS------HSNYVILSNMYAADGKWEGA 414
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 152/469 (32%), Positives = 251/469 (53%), Gaps = 65/469 (13%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I A ++F + + +NT+I G A+ A+ L+ +M + N +++ V+ A
Sbjct: 145 IEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPE----RNVVSWNTVITA 200
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH------ANCGDLNTASVLFDGDAK 168
F ++ + FNR +I + + G ++ A +LFD
Sbjct: 201 ----------FMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPV 250
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+VV+W+++ GYA+ L A LF++MP R+L SWN MITG+ + G++E+A + F ++
Sbjct: 251 RNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKM 310
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVG 287
++VV+W A+ISG+V G +++AL++F EM++ +P++ T +S+L AC+ L L G
Sbjct: 311 SNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEG 370
Query: 288 KKVHCTLLDMT-SGVAKVLHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGG 344
+++H + VA V+ +ALI+MY+KCG +E A ++F + RDV +W+ +I
Sbjct: 371 QQIHQIISKTVYQEVADVV--SALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAA 428
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF---------KL 395
A HG ++I++F EMQ L RP +T++ +L ACSHAG V+EG K F KL
Sbjct: 429 YAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKL 488
Query: 396 MRDEYN-----------------------IEPNIRHYG-------VHGDVELGRLANKRL 425
D + ++P+ + VHG ++LG+L ++L
Sbjct: 489 REDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKL 548
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
L + +G Y++LSNIYAS G+W VR M D +KKQPGCS IE
Sbjct: 549 LETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIE 597
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 163/309 (52%), Gaps = 38/309 (12%)
Query: 145 SLIYFHANCGDLNTASVLFD-GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
++I + CG + A LFD DA +VV W++L +GY R + AR LFD MPV++++
Sbjct: 102 AVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVI 161
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN MI GYA++G +++A +LF ++P+R+VVSWN +I+ ++ +A E+F M
Sbjct: 162 SWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRM---P 218
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVH--------CTLLDMTSGVAKVLH--------- 306
ER D ++ +++ + G ++ + + + M G A+ +
Sbjct: 219 ER-DVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFE 277
Query: 307 ---------GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
N +I + + G +ERA++ F M +++V TW+ +I G G +EE++ +
Sbjct: 278 QMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKI 337
Query: 358 FREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLM-RDEYN-----IEPNIRHYG 410
F EMQ V+P E TFV VL ACS + EG++ +++ + Y + I Y
Sbjct: 338 FSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYS 397
Query: 411 VHGDVELGR 419
G++EL R
Sbjct: 398 KCGELELAR 406
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 161/370 (43%), Gaps = 73/370 (19%)
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG-- 216
+S + D A +V + L + G++ AR +F+EMP RD+VSW +ITGY K G
Sbjct: 54 SSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMI 113
Query: 217 ------------------------------EMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+E+A LF+ +P ++V+SWN MI GY
Sbjct: 114 EEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARK 173
Query: 247 GMNKQALEMFEEM------------------RSVGE------RPDDVTMLSLLTACADLG 282
G QAL++FE+M R V E R + ++S T A L
Sbjct: 174 GWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLS 233
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+ G+ LL V V+ N +I YA+ ++ A ++F M +R++S+W+T+I
Sbjct: 234 --KNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMI 291
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G +G E ++ F +M V +T+ V+ G+ EE K F M+ N+
Sbjct: 292 TGFIQNGKLERAVDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKIFSEMQAANNV 347
Query: 403 EPN----IRHYGVHGDVEL---GRLANKRLLNMRKDESGDYV-LLSNIYASRGEWNRVEK 454
+PN + G + G+ ++ + E D V L N+Y+ GE +E
Sbjct: 348 KPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGE---LEL 404
Query: 455 VRKLMDDSDI 464
RK+ DD I
Sbjct: 405 ARKIFDDGSI 414
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 153/426 (35%), Positives = 214/426 (50%), Gaps = 91/426 (21%)
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKMDVVAWSSLTAGYARRGELSMAR 191
K G + R VR+ L+ + G+L +A L DG A DVV+ +++ G+AR G L A
Sbjct: 78 KLGLDRRRAVRDGLVELYLARGELASARALVDGFPAGRDVVSCTAMVTGHARHGFLDEAV 137
Query: 192 SLFDEMP----------------------------------------VRDLVSWNVMITG 211
LF M D+V+WN ++
Sbjct: 138 VLFFAMADDRCVAIDAVAAAAAFSACAQIGDLALGREAHRRVAERKVAMDVVAWNALVDM 197
Query: 212 YAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
YAK G+ A+ F +P K++VVSWN M+S + G ++AL +F+EM++ RPDD T
Sbjct: 198 YAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDAT 257
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
++ L ACA LG L+ G+ +H + M V+ GNAL+DMYAKCG++++A EVF GM
Sbjct: 258 FVAALGACAQLGALDTGRWLHAYMGRMGHSADGVV-GNALLDMYAKCGAVDQATEVFDGM 316
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
RDV T++++I GLA HG E+++++F MQR V P E+T +GVL AC HAG VEEG
Sbjct: 317 ARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGL 376
Query: 391 KYFKLMRDEYNIEPNIRHYG---------------------------------------V 411
+ M EP I HYG
Sbjct: 377 QQLNAM-----PEPRIEHYGCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLLAACRA 431
Query: 412 HGDVELG-RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470
HGDVE R+ +R+ + ++GDYVL+SN YAS G KVR M ++I K PGC
Sbjct: 432 HGDVERAERVMRRRVADA---DAGDYVLMSNTYASNGRHGEAVKVRGQMRRNEIDKVPGC 488
Query: 471 SLIEAD 476
SLIE D
Sbjct: 489 SLIEID 494
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 46/278 (16%)
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-DAKMDVVAWSSLTAGY 181
+G H ++ + + N+L+ +A CGD A F K +VV+W+++ + +
Sbjct: 171 LGREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAF 230
Query: 182 ARRGELSMARSLFDEM---PVR------------------------------------DL 202
AR GEL A +LF EM VR D
Sbjct: 231 ARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADG 290
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
V N ++ YAK G +++A E+F+ + +RDV ++ +MI G + G + AL +F M+
Sbjct: 291 VVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRA 350
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G P++VT+L +LTAC G +E G + + + ++ H ++DM + G +++
Sbjct: 351 GVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMPE-----PRIEHYGCVVDMLGRAGRLDK 405
Query: 323 AIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFR 359
A E+ M D WS+L+ HG E + + R
Sbjct: 406 AEELIAAMPVHSDALIWSSLLAACRAHGDVERAERVMR 443
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 16/290 (5%)
Query: 53 GAINYAHKMFVKI-TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV 111
G AH+ F ++ + + +NT++ A++ +A+ L+ +M+ +++P+ TF
Sbjct: 202 GDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAA 261
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L AC +L + G +H + + G + V N+L+ +A CG ++ A+ +FDG A+ DV
Sbjct: 262 LGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDV 321
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNE 227
++S+ G A G A SLF M + V ++T G +E+ + N
Sbjct: 322 YTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQLNA 381
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P+ + + ++ G +A E+ M D + SLL AC GD+E
Sbjct: 382 MPEPRIEHYGCVVDMLGRAGRLDKAEELIAAMPV---HSDALIWSSLLAACRAHGDVERA 438
Query: 288 KKVHCTLLDMTSGVAKVLHGNALI--DMYAKCGSIERAIEVFLGMRDRDV 335
++V M VA G+ ++ + YA G A++V MR ++
Sbjct: 439 ERV------MRRRVADADAGDYVLMSNTYASNGRHGEAVKVRGQMRRNEI 482
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 158/516 (30%), Positives = 245/516 (47%), Gaps = 112/516 (21%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L + C L L QI + G +++ L + S++ A +YA F+ E DT
Sbjct: 35 LLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLI--HATDYAAS-FLFSAEADT 91
Query: 71 -----FMYNTIIRGSAQSQNPLD-AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
F++NT+IR AQ+ + D A+ LY M +I PNKFT+ FVLKAC L N+G
Sbjct: 92 RLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLG 151
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
+ V S++ F +C
Sbjct: 152 ---------------QTVHGSVVKFGFDC------------------------------- 165
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAK-QGEMEKANELFNEVPKRDVVSWNAMISGY 243
D+ N M+ Y+ G + A ++F+E+PK D V+W+AMI GY
Sbjct: 166 ----------------DIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGY 209
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
G + +A+ +F EM+ PD++TM+S+L+AC DLG LE+GK + ++
Sbjct: 210 ARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIE-AYIERHEIHKP 268
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
V NALIDM+AKCG I +A+++F M ++ + +W+++I G+A HG +E+ +F EM
Sbjct: 269 VEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTS 328
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------ 411
V P ++ F+G+L ACSH+G VE G++YF M +Y + P I HYG
Sbjct: 329 SGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVK 388
Query: 412 ---------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
HG+ +LG K L+ +YVLLSNIYA
Sbjct: 389 EALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYA 448
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
W + K+R++M+ +KK PG ++IE D++ +
Sbjct: 449 KTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIY 484
>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 693
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 148/469 (31%), Positives = 241/469 (51%), Gaps = 46/469 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + H +F ++ D+ YNT+I A + + A+ + +M++ +P +++ L
Sbjct: 103 GMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNAL 162
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+AC++LL G +HG+IV N FVRN++ +A CGD++ A +LFDG +VV
Sbjct: 163 QACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVV 222
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+ + +GY + G + LF+EM + DLV+ + ++ Y + G ++ A LF ++
Sbjct: 223 SWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKL 282
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
PK+D + W MI GY G + A +F +M +PD T+ S++++CA L L G+
Sbjct: 283 PKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQ 342
Query: 289 KVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
VH ++ M G+ +L +AL+DMY KCG A +F M R+V TW+ +I G A
Sbjct: 343 VVHGKVVVM--GIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQ 400
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
+G E++ ++ MQ+ +P ITFVGVL AC +A V+EG+KYF + E+ I P +
Sbjct: 401 NGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSI-SEHGIAPTLD 459
Query: 408 HYG--------------------------------------VHGDVELGRLANKRLLNMR 429
HY GD++ LA L +
Sbjct: 460 HYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCAKGDLKNAELAASHLFELD 519
Query: 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+G Y++LSN+YA+ G W V VR LM + + KK S +E +K
Sbjct: 520 PRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNK 568
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 128/213 (60%), Gaps = 1/213 (0%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+ G+LS A+++FD M RD+ SWN +++ YAK G +E + +F+++P RD VS+N +I
Sbjct: 68 YAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLI 127
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+ + G + +AL++ M+ G +P + ++ L AC+ L DL GK++H ++ G
Sbjct: 128 ACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLG 187
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ NA+ DMYAKCG I++A +F GM D++V +W+ +I G G E I +F E
Sbjct: 188 ENTFVR-NAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNE 246
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
MQ ++P +T VL A G+V++ + F
Sbjct: 247 MQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLF 279
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 148/314 (47%), Gaps = 21/314 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F+K+ + D + T+I G AQ+ DA L+ M + ++KP+ +T S ++
Sbjct: 270 GRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMV 329
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+C +L G VHGK+V G + + V ++L+ + CG A V+F+ +V+
Sbjct: 330 SSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVI 389
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK---QGEMEK-ANELFNEV 228
W+++ GYA+ G++ A +L++ M + N+ G +M K + F+ +
Sbjct: 390 TWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSI 449
Query: 229 PKRDVVS----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA--DLG 282
+ + + MI+ G +A+++ + M P+ +LL+ CA DL
Sbjct: 450 SEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGM---PHEPNYRIWSTLLSVCAKGDLK 506
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV---STWS 339
+ E+ H LD + ++ L ++YA CG + V M++++ + +S
Sbjct: 507 NAELAAS-HLFELDPRNAGPYIM----LSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYS 561
Query: 340 TLIGGLAFHGFAEE 353
+ G H F E
Sbjct: 562 WVEVGNKVHRFVSE 575
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 165/555 (29%), Positives = 254/555 (45%), Gaps = 88/555 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
K C N+ +I L GF D LI+ GA+ A +F ++ D
Sbjct: 161 KACRNVTDGNKIHCLALKFGFMWDVYVAASLIHL--YCRYGAVVNARILFDEMPTRDMGS 218
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I G QS N +A+ L + + T +L ACT N G +H +
Sbjct: 219 WNAMISGYCQSGNAKEALTLSDGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSI 274
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K+G E FV N LI +A G L +FD D+++W+S+ Y + A
Sbjct: 275 KHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIL 334
Query: 193 LFDEMPV----------------------------------------RDLVSWNVMITGY 212
LF EM + D+ N ++ Y
Sbjct: 335 LFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMY 394
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER--PDDVT 270
AK G ++ A +FN +P +DV+SWN +ISGY G +A+EM+ M G + T
Sbjct: 395 AKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGT 454
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
+S+L AC+ G L G K+H LL V G +L DMY KCG ++ A+ +F +
Sbjct: 455 WVSVLPACSQAGALRQGMKLHGRLLK-NGLYLDVFVGTSLADMYGKCGRLDDALSLFYQI 513
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ W+TLI FHG E+++ +F+EM V+P ITFV +L ACSH+G V+EG+
Sbjct: 514 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGE 573
Query: 391 KYFKLMRDEYNIEPNIRHYG---------------------------------------V 411
F++M+ +Y I P+++HYG V
Sbjct: 574 WCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRV 633
Query: 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
HG+V+LG++A++ L + + G +VLLSN+YAS G+W V+++R + ++K PG S
Sbjct: 634 HGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWS 693
Query: 472 LIEADDKAFLQYLFN 486
+E D+K + Y N
Sbjct: 694 SMEVDNKVEVFYTGN 708
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/423 (27%), Positives = 209/423 (49%), Gaps = 51/423 (12%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV----IPGAINYAHKMFVKIT 66
L++ CTNL++ K + A + + S+A++ + S +V G + A F I
Sbjct: 60 LFRYCTNLQSAKCLHARLVV------SNAIQNVCISAKLVNLYCYLGNVALARYTFDHIH 113
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQ-MEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
D + +N +I G ++ + + ++ M ++P+ TF VLKAC + N
Sbjct: 114 NRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNK-- 171
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H +K+GF ++ +V SLI+ + G + A +LFD D+ +W+++ +GY + G
Sbjct: 172 -IHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSG 230
Query: 186 ELSMARSLFDEMPVRDLVSW-----------------------------------NVMIT 210
A +L D + D V+ N +I
Sbjct: 231 NAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLID 290
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
YA+ G ++ ++F+ + RD++SWN++I Y L +A+ +F+EMR +PD +T
Sbjct: 291 LYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLT 350
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
++SL + + LG++ + V L + + GNA++ MYAK G ++ A VF +
Sbjct: 351 LISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL--KVRPTEITFVGVLVACSHAGKVEE 388
++DV +W+T+I G A +GFA E+I M+ M+ ++ + T+V VL ACS AG + +
Sbjct: 411 PNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQ 470
Query: 389 GKK 391
G K
Sbjct: 471 GMK 473
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/404 (25%), Positives = 176/404 (43%), Gaps = 45/404 (11%)
Query: 7 RSSRLWKKCTNLRTLK-------QIQALVTINGFNSDSSALRELIYSGSVVIP-----GA 54
R SR+ C L +L +I+A ++ GF E I G+ V+ G
Sbjct: 340 RLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGL 399
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK--CSIKPNKFTFSFVL 112
++ A +F + D +NTII G AQ+ +A+ +Y ME+ I N+ T+ VL
Sbjct: 400 VDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVL 459
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC++ G +HG+++K G + FV SL + CG L+ A LF +++ V
Sbjct: 460 PACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSV 519
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
W++L A + G A LF EM D +++ +++ + G +++ F E+
Sbjct: 520 PWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCF-EM 578
Query: 229 PKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ D + + M+ Y G + AL ++S+ +PD +LL+AC G
Sbjct: 579 MQTDYGITPSLKHYGCMVDLYGRAGQLEIALNF---IKSMPLQPDASIWGALLSACRVHG 635
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE---VFLGMRDRDVSTWS 339
++++GK L ++ V + L +MYA G E E + G R WS
Sbjct: 636 NVDLGKIASEHLFEVEP--EHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWS 693
Query: 340 TL---------IGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
++ G H EE M+RE+ L + + +V
Sbjct: 694 SMEVDNKVEVFYTGNQTHPMYEE---MYRELTALHEKLKMVGYV 734
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 218/429 (50%), Gaps = 77/429 (17%)
Query: 93 YTQMEKCSIKPNKFTFSFVLKACTRLLYRN--MGFCVHGKIVKYGFEFNRFVRNSLIYFH 150
++ M ++PN TF +L C + +G +HG K G + N
Sbjct: 59 FSDMRLAGVEPNHITFIAILSGCGDFPSGSEALGDLLHGYACKLGLDRNH---------- 108
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMIT 210
V+ +++ Y++RG + AR +FD M ++ V+WN MI
Sbjct: 109 --------------------VMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMID 148
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
GY + G+++ A ++F+++P+RD++SW AMI+G+V G +++AL F EM+ G +PD V
Sbjct: 149 GYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVA 208
Query: 271 MLSLLTACADLGDLEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
+++ L AC +LG L G VH ++ D + V N+LID+Y +CG +E A +VF
Sbjct: 209 IIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRV---SNSLIDLYCRCGCVEFARQVFD 265
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
M R V +W+++I G A +G A ES+ FR+MQ + +P +TF G L ACSH G VEE
Sbjct: 266 KMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEE 325
Query: 389 GKKYFKLMRDEYNIEPNIRHYGVHGDV--ELGRLAN------------------------ 422
G +YF++M +Y I P I HYG D+ GRL +
Sbjct: 326 GLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAAC 385
Query: 423 --------------KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
K L ++ +YV+LSN+YA+ G+W K+R+ M +KKQP
Sbjct: 386 RNHGNNTVLAEKLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQP 445
Query: 469 GCSLIEADD 477
G S IE DD
Sbjct: 446 GFSSIEIDD 454
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 132/285 (46%), Gaps = 23/285 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A KMF K+ E D + +I G +A+ + +M+ +KP+ L
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAAL 213
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
ACT L + G VH ++ F+ N V NSLI + CG + A +FD K VV
Sbjct: 214 NACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV 273
Query: 173 AWSSLTAGYARRG----ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+S+ G+A G L R + +E D V++ +T + G +E+ F +
Sbjct: 274 SWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIM 333
Query: 229 PKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+S + ++ Y G + AL++ + M +P++V + SLL AC + G+
Sbjct: 334 ISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPM---KPNEVVIGSLLAACRNHGN 390
Query: 284 LEV-GKKV--HCTLLDMTSGVAKVLHGNALI--DMYAKCGSIERA 323
V +K+ H T L++ S H N +I +MYA G E A
Sbjct: 391 NTVLAEKLMKHLTDLNVKS------HSNYVILSNMYAADGKWEGA 429
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 33/198 (16%)
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD---- 280
N+ + VSW + I+ G +A + F +MR G P+ +T +++L+ C D
Sbjct: 28 LNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFPSG 87
Query: 281 ---LGDLEVGKK-----------VHCTLLDMTSGVAKV---------------LHGNALI 311
LGDL G V ++ M S +V + N +I
Sbjct: 88 SEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMI 147
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
D Y + G ++ A ++F M +RD+ +W+ +I G GF EE++A FREMQ V+P +
Sbjct: 148 DGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYV 207
Query: 372 TFVGVLVACSHAGKVEEG 389
+ L AC++ G + G
Sbjct: 208 AIIAALNACTNLGALSFG 225
>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 790
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 141/448 (31%), Positives = 219/448 (48%), Gaps = 78/448 (17%)
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
YN +I G +A+ + +M I+ ++FT+ V++AC +G VH ++
Sbjct: 254 YNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVL 313
Query: 133 K---YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ + F F+ NSL+ + CG N A
Sbjct: 314 RREDFSFHFD----NSLVTLYYKCGKFNEA------------------------------ 339
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
R++F++MP +DLVSWN +++GY G + +A +F E+ +++++SW MISG G
Sbjct: 340 -RAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
++ L++F M+ G P D + +CA LG G++ H L+ + + + GNA
Sbjct: 399 EEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFD-SSLSAGNA 457
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
LI MYAKCG +E A +VF M D +W+ LI L HG E++ ++ EM + +RP
Sbjct: 458 LITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPD 517
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
ITF+ VL ACSHAG V++G+KYF M Y I P HY
Sbjct: 518 RITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESII 577
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
VHG++ELG +A +L + + G Y+LLSN+YA+ G+W
Sbjct: 578 ESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWE 637
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDK 478
V +VRKLM D +KK+ CS IE + +
Sbjct: 638 EVARVRKLMRDRGVKKEVACSWIEMETQ 665
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/444 (26%), Positives = 198/444 (44%), Gaps = 99/444 (22%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPD---- 69
T+L+ + + + GF + L LI Y S ++YA ++F +I+EPD
Sbjct: 28 TSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKS----SELDYARQLFDEISEPDKIAR 83
Query: 70 -----------------------------TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS 100
T MYN +I G + + + A+ L+ +M+
Sbjct: 84 TTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCV--HGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158
KP+ FT++ VL A L+ + CV H +K G + V N+L+ ++ C ++
Sbjct: 144 FKPDDFTYASVL-AGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCA--SS 200
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEM 218
S+L AR +FD++P +D SW M+TGY K G
Sbjct: 201 PSLLHS-------------------------ARKVFDDIPEKDERSWTTMMTGYVKNGCF 235
Query: 219 EKANELFNEVPKR-DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
+ EL + + +V++NAMISGYV CG+ ++ALEM M S G D+ T S++ A
Sbjct: 236 DLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRA 295
Query: 278 CADLGDLEVGKKVHC--------------TLLDMTSGVAK---------------VLHGN 308
CA+ L++GK+VH +L+ + K ++ N
Sbjct: 296 CANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWN 355
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
AL+ Y G I A +F M+++++ +W +I GLA +GF EE + +F M+R P
Sbjct: 356 ALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEP 415
Query: 369 TEITFVGVLVACSHAGKVEEGKKY 392
+ F G + +C+ G G+++
Sbjct: 416 CDYAFSGAIKSCAVLGAYCNGQQF 439
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 148/318 (46%), Gaps = 73/318 (22%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VHG I+ +GF+ + + N LI + +L+ A LFD ++ D +A +++ +GY G+
Sbjct: 36 VHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGD 95
Query: 187 LSMARSLFDEMPV--RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+++ARS+F+E PV RD V +N MITG++ + GY
Sbjct: 96 IALARSVFEETPVSMRDTVMYNAMITGFSHNND------------------------GY- 130
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG-KKVHCTLLDMTSGVAK 303
A+ +F +M+ G +PDD T S+L A + D E + H L +G
Sbjct: 131 ------SAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVT 184
Query: 304 VLHGNALIDMYAKCGS----IERAIEVFLGMRDRDVSTWSTLIGG--------------- 344
+ NAL+ +Y++C S + A +VF + ++D +W+T++ G
Sbjct: 185 SV-SNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLK 243
Query: 345 --------LAFH---------GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
+A++ G +E++ M R M + E T+ V+ AC++A ++
Sbjct: 244 GMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQ 303
Query: 388 EGKKY--FKLMRDEYNIE 403
GK+ + L R++++
Sbjct: 304 LGKQVHAYVLRREDFSFH 321
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 136/303 (44%), Gaps = 30/303 (9%)
Query: 50 VIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFS 109
V G I A +F ++ E + + +I G A++ + + L++ M++ +P + FS
Sbjct: 362 VSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFS 421
Query: 110 FVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
+K+C L G H ++VK GF+ + N+LI +A CG + A +F +
Sbjct: 422 GAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCL 481
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELF 225
D V+W++L A + G A +++EM + D +++ ++T + G +++ + F
Sbjct: 482 DSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYF 541
Query: 226 NEV-------PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE----RPDDVTMLSL 274
N + P D + +I +LC K F E S+ E +P +L
Sbjct: 542 NSMETVYRIPPGAD--HYARLID--LLCRSGK-----FSEAESIIESLPFKPTAEIWEAL 592
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI--DMYAKCGSIERAIEVFLGMRD 332
L+ C G++E+G D G+ G ++ +MYA G E V MRD
Sbjct: 593 LSGCRVHGNMELG----IIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRD 648
Query: 333 RDV 335
R V
Sbjct: 649 RGV 651
>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 740
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 154/512 (30%), Positives = 255/512 (49%), Gaps = 102/512 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMFVKITEPD 69
L +KC N TLKQI + G + + L LI S +P YA K+F I+ P
Sbjct: 155 LQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLIKISSKFNLP----YAFKIFNYISNPT 210
Query: 70 TFMYNTIIRG--SAQSQNPLDAVF-LYTQ-MEKCSIKPNKFTFSFVLKAC-TRLLYRNMG 124
F+YNT+I + +QN + F LY + + +++PN FTF + KAC + + + G
Sbjct: 211 IFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWFHYG 270
Query: 125 FCVHGKIVKY-GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
+H ++K+ F+ FV+ SL+ F YA+
Sbjct: 271 PLLHTHVLKFLQPPFDNFVQASLLNF-------------------------------YAK 299
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G++ ++R +FD + DL +WNV++ YA+ + F++
Sbjct: 300 YGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDA--------------- 344
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
+ ++L +F +M+ +G RP++VT+++L++AC++LG + G VHC +L + +
Sbjct: 345 ---DFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNR 401
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGM--RDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ G A +DMY+KCG + A +VF M DRD ++ +IGG A HG+ +++ ++R+M
Sbjct: 402 FV-GTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKM 460
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
+ + P TFV + ACSH G VEEG + FK M++ + +EP + HYG
Sbjct: 461 KFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGR 520
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+HG++ +G +A +L+ + + SG+YVLLSN+
Sbjct: 521 LKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNM 580
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
YAS G N V++VRKLM + K PG SL+E
Sbjct: 581 YASVGRVNDVKRVRKLMKHHGVNKLPGFSLVE 612
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 141/503 (28%), Positives = 250/503 (49%), Gaps = 83/503 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A++ F ++ D +N ++ G ++ +AV L+ +M + + T S VL
Sbjct: 118 GRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVL 177
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C L R + +H VK+G + FV N++I + G L +FDG + D+V
Sbjct: 178 PMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLV 237
Query: 173 AWSSLTAGYARRGELSMARSLFDEM----------------------------------- 197
W+S+ +G+ + G+++ A +F M
Sbjct: 238 TWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYM 297
Query: 198 -----PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
V D+++ N ++ YAK ++E A +F+ +P RD VSWN +I+GY+ G+ +A
Sbjct: 298 VRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEA 357
Query: 253 LEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNAL 310
+ +++ M + G +P T +S+L A + LG L+ G ++H L + +G+ V G +
Sbjct: 358 IHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHA--LSIKTGLNLDVYVGTCV 415
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
ID+YAKCG ++ A+ +F R W+ +I G+ HG +++++F +MQ+ + P
Sbjct: 416 IDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDH 475
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
+TFV +L ACSHAG V++G+ +F +M+ Y I+P +HY
Sbjct: 476 VTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIR 535
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+HG+VE+G++A++ L + G YVL+SN+YA G+W+
Sbjct: 536 NMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDG 595
Query: 452 VEKVRKLMDDSDIKKQPGCSLIE 474
V++VR L+ +++K PG S IE
Sbjct: 596 VDEVRSLVRRQNLQKTPGWSSIE 618
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 129/308 (41%), Gaps = 71/308 (23%)
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEM 218
A L G + D A +L Y R G + A FDEM RD+ +WN M++G +
Sbjct: 92 ACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARA 151
Query: 219 EKANELFNEVPKRDVVS---------------------------------------WNAM 239
+A LF + V NAM
Sbjct: 152 AEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAM 211
Query: 240 ISGYVLCGMNKQALEMFEEMRS--------------------------VGERPDDV---- 269
I Y GM ++ ++F+ M S G R V
Sbjct: 212 IDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDV 271
Query: 270 -TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
T+LSL +A A GD+ G+ VHC ++ V ++ GNA++DMYAK IE A +F
Sbjct: 272 LTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFD 331
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHAGKVE 387
M RD +W+TLI G +G A E+I ++ MQ+ + ++P + TFV VL A SH G ++
Sbjct: 332 SMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQ 391
Query: 388 EGKKYFKL 395
+G + L
Sbjct: 392 QGTRMHAL 399
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 62/295 (21%)
Query: 16 TNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITE 67
++L L+Q + AL G N D +Y G+ VI G ++ A +F +
Sbjct: 385 SHLGALQQGTRMHALSIKTGLNLD-------VYVGTCVIDLYAKCGKLDEAMLLFEQTPR 437
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
T +N +I G + A+ L++QM++ I P+ TF +L AC+
Sbjct: 438 RSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACS----------- 486
Query: 128 HGKIVKYGFEFNRFVRNSL----IYFHANC--------GDLNTA-SVLFDGDAKMDVVAW 174
H +V G F ++ + I H C G L+ A + + K D W
Sbjct: 487 HAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIW 546
Query: 175 SSLTAGYARRGELSMAR----SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
+L G + M + +LF E+ +++ + +M YAK G+ + +E+ + V +
Sbjct: 547 GALLGACRIHGNVEMGKVASQNLF-ELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRR 605
Query: 231 RDVV------------SWNAMISGYVLC------GMNKQALEMFEEMRSVGERPD 267
+++ S N SG + + ++ L++ ++RS+G PD
Sbjct: 606 QNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPD 660
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 142/429 (33%), Positives = 216/429 (50%), Gaps = 77/429 (17%)
Query: 93 YTQMEKCSIKPNKFTFSFVLKACTRLLYRN--MGFCVHGKIVKYGFEFNRFVRNSLIYFH 150
++ M ++PN TF +L C + +G +HG K G + N
Sbjct: 59 FSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNH---------- 108
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMIT 210
V+ +++ Y++RG AR +FD M ++ V+WN MI
Sbjct: 109 --------------------VMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMID 148
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
GY + G+++ A ++F+++P+RD++SW AMI+G+V G ++AL F EM+ G +PD V
Sbjct: 149 GYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVA 208
Query: 271 MLSLLTACADLGDLEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
+++ L AC +LG L G VH +L D + V N+LID+Y +CG +E A +VF
Sbjct: 209 IIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRV---SNSLIDLYCRCGCVEFARQVFY 265
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
M R V +W+++I G A +G A ES+ FR+MQ +P +TF G L ACSH G VEE
Sbjct: 266 NMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEE 325
Query: 389 GKKYFKLMRDEYNIEPNIRHYGVHGDV--ELGRLAN------------------------ 422
G +YF++M+ +Y I P I HYG D+ GRL +
Sbjct: 326 GLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAAC 385
Query: 423 --------------KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
K L ++ +YV+LSN+YA+ G+W K+R+ M +KKQP
Sbjct: 386 SNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQP 445
Query: 469 GCSLIEADD 477
G S IE DD
Sbjct: 446 GFSSIEIDD 454
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 25/286 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A KMF K+ E D + +I G + +A+ + +M+ +KP+ L
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
ACT L + G VH ++ F+ N V NSLI + CG + A +F K VV
Sbjct: 214 NACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVV 273
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+S+ G+A G + F +M + D V++ +T + G +E+ F ++
Sbjct: 274 SWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYF-QI 332
Query: 229 PKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
K D + + ++ Y G + AL++ + M +P++V + SLL AC++ G
Sbjct: 333 MKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPM---KPNEVVIGSLLAACSNHG 389
Query: 283 -DLEVGKKV--HCTLLDMTSGVAKVLHGNALI--DMYAKCGSIERA 323
++ + +++ H T L++ S H N +I +MYA G E A
Sbjct: 390 NNIVLAERLMKHLTDLNVKS------HSNYVILSNMYAADGKWEGA 429
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 238/464 (51%), Gaps = 92/464 (19%)
Query: 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151
++TQM+ I PN+FT+ +LK CT L ++G +H +++K GF+FN +V + LI +A
Sbjct: 425 IFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYA 484
Query: 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR----------- 200
G L+ A +F + DVV+W+++ AGY + + + A +LF EM +
Sbjct: 485 KHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFAS 544
Query: 201 ----------------------------DLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
DL N +++ YA+ G++ +A F+++ +D
Sbjct: 545 AISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKD 604
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSWN+++SG+ G ++AL +F +M G + T S ++A A++ ++ +GK++H
Sbjct: 605 NVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIH- 663
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
++ T ++ NALI +YAKCG+I+ D+S W+++I G + HG
Sbjct: 664 GMIRKTGYDSETEVSNALITLYAKCGTID------------DIS-WNSMITGYSQHGCGF 710
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
E++ +F +M++L V P +TFVGVL ACSH G V+EG YF+ M + +N+ P HY
Sbjct: 711 EALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACV 770
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
VH ++++G A LL + +S
Sbjct: 771 VDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDS 830
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
YVL+SN+YA G+W+ ++ R++M D +KK+PG S +E D+
Sbjct: 831 ATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDN 874
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 102/400 (25%), Positives = 196/400 (49%), Gaps = 41/400 (10%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT 75
+ R ++QI A +GF S + LI G ++ A K+F + D+ +
Sbjct: 178 VSFRFVEQIHAKTITSGFESSTFICNPLI--DLYFKNGFLSSAKKVFENLKARDSVSWVA 235
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+I G +Q+ +A+ L+ Q+ VL ACT++ + G +HG ++K G
Sbjct: 236 MISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQG 281
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
F +V N+L+ ++ G+L++A +F ++ D V+++SL +G A++G ++ A +LF
Sbjct: 282 FSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFK 341
Query: 196 EMPVR----DLVSWNVMITGYAKQGEMEKANELFNEVPK----RDVVSWNAMISGYVLCG 247
+M + D V+ +++ A G + + + K D+V +++ YV C
Sbjct: 342 KMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCS 401
Query: 248 MNKQA----------------LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
K A ++F +M+ G P+ T S+L C LG ++G+++H
Sbjct: 402 DIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIH 461
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+L T V + LIDMYAK G ++ A+++F +++ DV +W+ +I G H
Sbjct: 462 TQVLK-TGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKF 520
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
E++ +F+EMQ ++ I F + AC+ +++G++
Sbjct: 521 TEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ 560
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/473 (23%), Positives = 215/473 (45%), Gaps = 77/473 (16%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
A+N +M ++ ++NT I + P L+ +M +++ ++ F+ VL+
Sbjct: 116 AVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVP----GLFRRMLTKNVEFDERIFAVVLR 171
Query: 114 ACT------RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
C+ R + + +H K + GFE + F+ N LI + G L++A +F+
Sbjct: 172 GCSGNAVSFRFVEQ-----IHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLK 226
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVR-------------------------DL 202
D V+W ++ +G ++ G A LF ++ + +
Sbjct: 227 ARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSET 286
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
N ++T Y++ G + A ++F+ + +RD VS+N++ISG G +AL +F++M
Sbjct: 287 YVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLD 346
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD--MTSGVAKVLHGNALIDMYAKCGSI 320
++PD VT+ SLL+ACA +G L GK+ H + MTS + V+ G +L+D+Y KC I
Sbjct: 347 CQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDI--VVEG-SLLDLYVKCSDI 403
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ A E FL D +S +F +MQ + P + T+ +L C
Sbjct: 404 KTAHEFFLCYGQLDN---------------LNKSFQIFTQMQIEGIVPNQFTYPSILKTC 448
Query: 381 SHAGKVEEGKK-YFKLMRD--EYNIEPN---IRHYGVHGDVELGRLANKRLLNMRKDESG 434
+ G + G++ + ++++ ++N+ + I Y HG ++ +RL ++++
Sbjct: 449 TTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRL---KENDVV 505
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ--------PGCSLIEADDKA 479
+ + Y ++ + K M D IK C+ I+A D+
Sbjct: 506 SWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQG 558
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 131/306 (42%), Gaps = 42/306 (13%)
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH--------AN 152
++P F K T+ ++ N K++ F F+ F +L Y H N
Sbjct: 4 LRPFNFYSQLPFKFHTKPIFNNH------KLLCGKFSFSAFSNTALNYAHNDDEIPEKEN 57
Query: 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY 212
D N + + + + V +S T + G L+ +RS +D + + D Y
Sbjct: 58 EMDGNASGIGYLHLMEQHGVRANSQTFLWLLEGCLN-SRSFYDGLKLIDF---------Y 107
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
G++ A +F+E+P R + WN + + ++ + + +F M + D+
Sbjct: 108 LAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFA 167
Query: 273 SLLTACA-DLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGM 330
+L C+ + +++H + TSG + N LID+Y K G + A +VF +
Sbjct: 168 VVLRGCSGNAVSFRFVEQIHAKTI--TSGFESSTFICNPLIDLYFKNGFLSSAKKVFENL 225
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ RD +W +I GL+ +G+ EE++ +F ++ VL AC+ E GK
Sbjct: 226 KARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGK 271
Query: 391 KYFKLM 396
+ L+
Sbjct: 272 QLHGLV 277
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 46/197 (23%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT 75
N+R KQI ++ G++S++ LI ++ K D +N+
Sbjct: 654 ANVRIGKQIHGMIRKTGYDSETEVSNALI---------------TLYAKCGTIDDISWNS 698
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+I G +Q +A+ L+ M++ + PN TF VL AC+ H +V G
Sbjct: 699 MITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACS-----------HVGLVDEG 747
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
+ R ++ A L ++ + R G LS A+ +
Sbjct: 748 ISYFR--------------SMSEAHNLVPKPEH-----YACVVDLLGRSGLLSRAKRFVE 788
Query: 196 EMPVR-DLVSWNVMITG 211
EMP++ D + W +++
Sbjct: 789 EMPIQPDAMVWRTLLSA 805
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 218/450 (48%), Gaps = 78/450 (17%)
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN----MGFCV 127
+++ +IR ++S P A+ LY + + + P T +LK+ + V
Sbjct: 39 LHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTV 98
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHAN-CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
H VK G + V N+LI HA G L +L A +D
Sbjct: 99 HTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDAS-------------- 144
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
++N +IT YA+ G + A LF+E+P R+ VSW+AM++GYV
Sbjct: 145 -----------------TFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQA 187
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVL 305
G ++AL +F M++ RPDD ++ +L ACA G LE GK VH L G+ +
Sbjct: 188 GDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYL--KAHGIKINLF 245
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
G AL+DMY+KCG ++ A++VF M+ ++V W+T+I GLA HG E++ +F +M+
Sbjct: 246 FGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSG 305
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------- 411
+RP +I F+GVL AC+HAG V++G++ F M +Y I+P I HYG
Sbjct: 306 IRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEA 365
Query: 412 -------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
H +VE K + + D+SG YVLLSNIYA+
Sbjct: 366 KEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAAS 425
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G ++R LM + + K PGCS +E +
Sbjct: 426 GRHASAREIRHLMREKGVDKTPGCSTVEVN 455
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 137/294 (46%), Gaps = 18/294 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F ++ + ++ ++ G Q+ + +A+ ++ +M+ ++P+ VL
Sbjct: 157 GRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVL 216
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + G VHG + +G + N F +L+ ++ CG++ A +F+ +V+
Sbjct: 217 AACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVL 276
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP---VR-DLVSWNVMITGYAKQGEMEKANELFNEV 228
AW+++ G A G S A LF +M +R D +++ ++ G ++K ELF+ +
Sbjct: 277 AWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSM 336
Query: 229 PKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
++ + + M+ G +A EM ++M PD + +L+ C +
Sbjct: 337 VRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPM---EPDALIWGALMAGCRFHKN 393
Query: 284 LEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+E + V H LL+ A VL L ++YA G A E+ MR++ V
Sbjct: 394 VEFAEYVAKHWILLEPDKSGAYVL----LSNIYAASGRHASAREIRHLMREKGV 443
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 143/461 (31%), Positives = 223/461 (48%), Gaps = 71/461 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A ++F + + MYNTI+ + D + + +M + +P+K T +
Sbjct: 280 GDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTI 339
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC +L ++G H +++ G E + N++I + CG A
Sbjct: 340 AACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAAC------------ 387
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+F+ MP + +V+WN +I G + G+ME A +F+E+ +RD
Sbjct: 388 -------------------KVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERD 428
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+VSWN MI V M ++A+E+F EM++ G D VTM+ + +AC LG L++ K V C
Sbjct: 429 LVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWV-C 487
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
T ++ + G AL+DM+++CG A+ VF M RDVS W+ IG +A G E
Sbjct: 488 TYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTE 547
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV- 411
+I +F EM KV+P ++ FV +L ACSH G V++G++ F M + I P+I HYG
Sbjct: 548 GAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCM 607
Query: 412 --------------------------------------HGDVELGRLANKRLLNMRKDES 433
H +VEL A ++L + +
Sbjct: 608 VDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERV 667
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
G +VLLSNIYAS G+W V +VR M + ++K PG S IE
Sbjct: 668 GIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIE 708
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 164/495 (33%), Positives = 236/495 (47%), Gaps = 90/495 (18%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGF--NSDSSALRELIYSGSVVIPG--AIN 56
N R+ SS+L C L+ LKQ+ + G + +S L +LI S SV I +++
Sbjct: 21 NPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIAS-SVQIGTLESLD 79
Query: 57 YAHKMFVKI--TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
YA F FMYN +IRG A + A+ LY QM I P+K+TF F+L A
Sbjct: 80 YARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSA 139
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C+++L + G VHG ++K G E + FV NSLI+F+A CG ++ LFDG + +VV+W
Sbjct: 140 CSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSW 199
Query: 175 SSLTAGYARRGELSMARSLFDEM--------PV------------RDL------------ 202
+SL GY+ R A SLF +M PV +DL
Sbjct: 200 TSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISE 259
Query: 203 -------VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
+ N ++ Y K G++ A ++F+E +++V +N ++S YV L +
Sbjct: 260 LGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVI 319
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL-DMTSGVAKVLHGNALIDMY 314
+EM G RPD VTMLS + ACA LGDL VGK H +L + G + NA+IDMY
Sbjct: 320 LDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNI--SNAIIDMY 377
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG------------------------- 349
KCG E A +VF M ++ V TW++LI GL G
Sbjct: 378 MKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIG 437
Query: 350 ------FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403
EE+I +FREMQ + +T VG+ AC + G ++ K IE
Sbjct: 438 ALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTY------IE 491
Query: 404 PNIRHYGVHGDVELG 418
N +H D++LG
Sbjct: 492 KN----DIHVDLQLG 502
>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 152/469 (32%), Positives = 250/469 (53%), Gaps = 65/469 (13%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I A ++F + + +NT+I G A+ A+ L+ M + N +++ V+ A
Sbjct: 145 IEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPE----RNVVSWNTVITA 200
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH------ANCGDLNTASVLFDGDAK 168
F ++ + FNR +I + + G ++ A +LFD
Sbjct: 201 ----------FMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPV 250
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV 228
+VV+W+++ GYA+ L A LF++MP R+L SWN MITG+ + G++E+A + F ++
Sbjct: 251 RNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKM 310
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVG 287
++VV+W A+ISG+V G +++AL++F EM++ +P++ T +S+L AC+ L L G
Sbjct: 311 SNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEG 370
Query: 288 KKVHCTLLDMT-SGVAKVLHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGG 344
+++H + VA V+ +ALI+MY+KCG +E A ++F + RDV +W+ +I
Sbjct: 371 QQIHQIISKTVYQEVADVV--SALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAA 428
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF---------KL 395
A HG ++I++F EMQ L RP +T++ +L ACSHAG V+EG K F KL
Sbjct: 429 YAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKL 488
Query: 396 MRDEYN-----------------------IEPNIRHYG-------VHGDVELGRLANKRL 425
D + ++P+ + VHG ++LG+L ++L
Sbjct: 489 REDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKL 548
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
L + +G Y++LSNIYAS G+W VR M D +KKQPGCS IE
Sbjct: 549 LETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIE 597
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 162/309 (52%), Gaps = 38/309 (12%)
Query: 145 SLIYFHANCGDLNTASVLFD-GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
++I + CG + A LFD DA +VV W++L +GY R + AR LFD MPV++++
Sbjct: 102 AVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVI 161
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWN MI GYA++G +++A +LF +P+R+VVSWN +I+ ++ +A E+F M
Sbjct: 162 SWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRM---P 218
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVH--------CTLLDMTSGVAKVLH--------- 306
ER D ++ +++ + G ++ + + + M G A+ +
Sbjct: 219 ER-DVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFE 277
Query: 307 ---------GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
N +I + + G +ERA++ F M +++V TW+ +I G G +EE++ +
Sbjct: 278 QMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKI 337
Query: 358 FREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLM-RDEYN-----IEPNIRHYG 410
F EMQ V+P E TFV VL ACS + EG++ +++ + Y + I Y
Sbjct: 338 FSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYS 397
Query: 411 VHGDVELGR 419
G++EL R
Sbjct: 398 KCGELELAR 406
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 160/370 (43%), Gaps = 73/370 (19%)
Query: 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG-- 216
+S + D A +V + L + G++ AR +F+EMP RD+VSW +ITGY K G
Sbjct: 54 SSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMI 113
Query: 217 ------------------------------EMEKANELFNEVPKRDVVSWNAMISGYVLC 246
+E+A LF+ +P ++V+SWN MI GY
Sbjct: 114 EEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARK 173
Query: 247 GMNKQALEMFEEM------------------RSVGE------RPDDVTMLSLLTACADLG 282
G QAL++FE M R V E R + ++S T A L
Sbjct: 174 GWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLS 233
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+ G+ LL V V+ N +I YA+ ++ A ++F M +R++S+W+T+I
Sbjct: 234 --KNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMI 291
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G +G E ++ F +M V +T+ V+ G+ EE K F M+ N+
Sbjct: 292 TGFIQNGKLERAVDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKIFSEMQAANNV 347
Query: 403 EPN----IRHYGVHGDVEL---GRLANKRLLNMRKDESGDYV-LLSNIYASRGEWNRVEK 454
+PN + G + G+ ++ + E D V L N+Y+ GE +E
Sbjct: 348 KPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGE---LEL 404
Query: 455 VRKLMDDSDI 464
RK+ DD I
Sbjct: 405 ARKIFDDGSI 414
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 140/470 (29%), Positives = 240/470 (51%), Gaps = 46/470 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+I F ++ D+ YNT I G + + P +++ L+ +M++ +P ++T +L
Sbjct: 103 GSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSIL 162
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A +L G +HG I+ F N F+ N+L +A CG++ A LFD K ++V
Sbjct: 163 NASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLV 222
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+ + +GYA+ G+ L +M + D V+ + +I Y + G +++A +F+E
Sbjct: 223 SWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEF 282
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
++D+V W AM+ GY G + AL +F EM PD T+ S++++CA L L G+
Sbjct: 283 KEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQ 342
Query: 289 KVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
VH + +G+ +L +ALIDMY+KCG I+ A VF M R+V +W+ +I G A
Sbjct: 343 AVHGK--SILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQ 400
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
+G ++++ +F M + K +P +TF+G+L AC H +E+G++YF + +++ + P +
Sbjct: 401 NGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLD 460
Query: 408 HYG---------------------------------------VHGDVELGRLANKRLLNM 428
HY GD+ +A + L +
Sbjct: 461 HYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFEL 520
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ Y++LSN+YAS G W V VR LM ++KK G S IE D++
Sbjct: 521 DPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNE 570
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 133/219 (60%), Gaps = 1/219 (0%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+ G+L A++LFD+M RD+ SWN +++ YAK G ++ F+ +P RD VS+N I
Sbjct: 68 YAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTI 127
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+G+ +++LE+F+ M+ G P + T++S+L A A L DL GK++H +++ + +
Sbjct: 128 AGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSII-VRNF 186
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ V NAL DMYAKCG IE+A +F + +++ +W+ +I G A +G E+ I + +
Sbjct: 187 LGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQ 246
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
M+ P ++T ++ A G+V+E ++ F +++
Sbjct: 247 MRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEK 285
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 152/368 (41%), Gaps = 77/368 (20%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT 75
++LR KQI + + F + L + G I A +F +T+ + +N
Sbjct: 169 SDLRYGKQIHGSIIVRNFLGNVFIWNAL--TDMYAKCGEIEQARWLFDCLTKKNLVSWNL 226
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+I G A++ P + L QM P++ T S ++ A
Sbjct: 227 MISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA--------------------- 265
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
+ CG ++ A +F + D+V W+++ GYA+ G A LF+
Sbjct: 266 --------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFN 311
Query: 196 EMPVR---------------------------------------DLVSWNVMITGYAKQG 216
EM + +L+ + +I Y+K G
Sbjct: 312 EMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCG 371
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
++ A +FN +P R+VVSWNAMI G G +K ALE+FE M +PD+VT + +L+
Sbjct: 372 FIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILS 431
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM-RDRDV 335
AC +E G++ ++ + + H ++++ + G IE+A+ + M D D
Sbjct: 432 ACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDF 491
Query: 336 STWSTLIG 343
WSTL+
Sbjct: 492 LIWSTLLS 499
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 231/467 (49%), Gaps = 73/467 (15%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
T+ ++ L +CTNL+ LK++ A + +G +L ++ +++YA K+F
Sbjct: 29 TSHSQTLSLIDQCTNLKHLKELHATILRSGLFFHPYNASKLFSVAALSSFSSLDYARKVF 88
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYR 121
+I++P+ + +NT+IR A S P+ ++ ++ +M S PNKFTF FV+KA +
Sbjct: 89 EEISQPNLYTWNTLIRAFASSPEPIHSLLIFIRMLYDSPDFPNKFTFPFVIKAAAGVASL 148
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
+HG +K + F+ NSLI+ +A+CGDL++A +F + DVV+W+S+ G+
Sbjct: 149 PFSQAIHGMAIKASLGSDLFILNSLIHCYASCGDLDSAYSVFVKIEEKDVVSWNSMIKGF 208
Query: 182 ARRGELSMARSLFDEMPVR---------------------------------------DL 202
G A LF M +L
Sbjct: 209 VLGGCPDKALELFQLMKAENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYIERNGINVNL 268
Query: 203 VSWNVMITGYAKQGEMEKANELFNE-------------------------------VPKR 231
N M+ Y K G +E A LF++ +P++
Sbjct: 269 TVSNAMLDMYVKNGSLEDARRLFDKMEEKDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQ 328
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDDVTMLSLLTACADLGDLEVGKKV 290
D+ +WN +IS Y G K+AL +F E++ S +PD+VT++S L+ACA LG +++G +
Sbjct: 329 DISAWNVLISAYEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSACAQLGAIDIGGWI 388
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
H + + L +LIDMY+KCG +E+A+++F + RDV WS +I GLA HG
Sbjct: 389 HVYIKKQDIKLNCHL-TTSLIDMYSKCGEVEKALDIFYSVDRRDVFVWSAMIAGLAMHGR 447
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
+I +F EMQ KVRP +TF +L ACSH G V EG+ +F M
Sbjct: 448 GRAAIDLFFEMQETKVRPNAVTFTNLLCACSHTGLVNEGRMFFNQME 494
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/400 (33%), Positives = 214/400 (53%), Gaps = 35/400 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +KC+N + LKQ+ + G D +R+LI S G + YA +F ++ PD
Sbjct: 31 LLQKCSNFKQLKQVHGKIIRFGLTYDQLLMRKLIQLSSSY--GKMKYATLVFDQLNAPDV 88
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F +N +IR +P A+ L+ M P+KFT+ FV+ AC ++G H
Sbjct: 89 FTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMASSALDLGIVAHAL 148
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+K GF + +V+N+++ + C +++ +FD +V AW+++ +G G+L A
Sbjct: 149 AIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDKMRVRNVFAWTTVISGLVACGKLDTA 208
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R LF++MP +++VSW MI GY K ++ E FN
Sbjct: 209 RELFEQMPSKNVVSWTAMIDGYVKH---KQPIEAFN------------------------ 241
Query: 251 QALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
+FE M+ V RP++ T++SL+ AC ++G L++G++VH L + L G A
Sbjct: 242 ----LFERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFL-GTA 296
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
LIDMY+KCG ++ A VF M+ R ++TW+T+I L HG+ +E++++F EM++ P
Sbjct: 297 LIDMYSKCGYLDDARTVFDMMQVRTLATWNTMITSLGVHGYRDEALSLFDEMEKANEVPD 356
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
ITFVGVL AC + +E +KYF LM D Y I P + HY
Sbjct: 357 AITFVGVLSACVYMNDLELAQKYFNLMTDHYGITPILEHY 396
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 204/354 (57%), Gaps = 48/354 (13%)
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
A D S+L + YA+ L AR +FDE+ RD +N +++ YAK G ++ A +LF
Sbjct: 118 ASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFE 177
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLE 285
E+P R+VVSW AM+SGY G +++A+E F EM G +P+++T+ S+L ACA +G +E
Sbjct: 178 EMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAME 237
Query: 286 VGKKVHCTLLDMTSG---VAKVLHGNALIDMYAKCGSIERAIEVFLGM-RDRDVSTWSTL 341
+G+KV + G + V NAL++MY+KCGSI +A +VF G+ R +D+ +W+++
Sbjct: 238 LGRKVE----EYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSM 293
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I A HG E++A+F +++ V+P ITFVGV++AC+H G V EGK +F M E++
Sbjct: 294 IMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFS 353
Query: 402 IEPNIRHYG---------------------------------------VHGDVELGRLAN 422
++P I HYG HG+VEL LA
Sbjct: 354 LKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNVELAELAM 413
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+L+++ + + V+LSNIYAS G+W+ V +V KL+ + D KK G S IE D
Sbjct: 414 DKLIHLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFIELD 467
>gi|325260825|gb|ADZ04643.1| hypothetical protein [Oryza punctata]
Length = 674
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 234/464 (50%), Gaps = 43/464 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G+++ A ++F + E + ++IRG + D + L+ M + ++ N T S VL
Sbjct: 209 GSVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVL 268
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC G +H I+ GFE + F+ +S+I ++ G + A F+ + D+V
Sbjct: 269 DACAGASLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQKDIV 328
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
+W+SL GY + + A LF MP +D VSW M+ G+A +G M ++ ELF ++P +D
Sbjct: 329 SWNSLITGYVQHDMVEEAHVLFKLMPQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKD 388
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VV+W A+IS ++ G A+ F M G +P+ +T LL+A A L L G++ H
Sbjct: 389 VVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTITFSCLLSALASLAMLNQGRQAHA 448
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
++M +H +LI MYAKCG + A VF + + + +++I HGFAE
Sbjct: 449 YSINMGWVFDSAVH-TSLISMYAKCGRLAEAHHVFSSISNPSLIAINSMITAFVQHGFAE 507
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY--- 409
+++ +F +MQ +P +TF+G+L C+ AG V++G YF+ MR Y +EPN HY
Sbjct: 508 DALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCM 567
Query: 410 ------------------------------------GVHGDVELGRLANKRLLNMRKDES 433
+H ++ ++A ++LL ++
Sbjct: 568 VDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDA 627
Query: 434 GDYVLLSNIYASRG-EWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
Y +LS +++S G E+ ++KV +L + + K+PG SLI D
Sbjct: 628 TAYTVLSKMFSSAGMEYEEMQKVVQLSNMA--SKRPGYSLIMQD 669
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 136/248 (54%), Gaps = 7/248 (2%)
Query: 151 ANCGDLNTASVLFDGDAKM--DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVM 208
A G L A ++++ + D V ++L AGY R GEL+MA +F+ M VRD++SW+ M
Sbjct: 142 AKAGMLREAELVYEEMPQQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAM 201
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
+ G K G + +A +F+ +P+R VVSW +MI GYV GM L +F MR G + +
Sbjct: 202 VDGLCKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNA 261
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
T+ +L ACA G ++H ++ M + + G+++I MY++ G + A F
Sbjct: 262 TTLSVVLDACAGASLAREGIQIHNLIISMGFEL-DIFLGDSVIIMYSRFGWMADAQRAFN 320
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
M+ +D+ +W++LI G H EE+ +F+ M + +++ ++V ++ G + E
Sbjct: 321 CMQQKDIVSWNSLITGYVQHDMVEEAHVLFKLMP----QKDAVSWTSMVVGFANRGWMRE 376
Query: 389 GKKYFKLM 396
+ F+ M
Sbjct: 377 SVELFEQM 384
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 136/258 (52%), Gaps = 7/258 (2%)
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
NR N+L+ + G L A +LFD DV++W++L YA G+L+ AR +FD+MP
Sbjct: 37 NRAHLNALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMP 96
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
R+ SWN +++ Y + A+ LF ++P ++ VS+ A+ISG GM ++A ++EE
Sbjct: 97 RRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAGMLREAELVYEE 156
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
M + D V +L+ +G+L + +V MT V V+ +A++D K G
Sbjct: 157 MPQ--QWRDPVGSNALMAGYLRVGELAMALRV---FEGMT--VRDVISWSAMVDGLCKHG 209
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
S+ A VF M +R V +W+++I G G + + +F M+R V+ T VL
Sbjct: 210 SVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLD 269
Query: 379 ACSHAGKVEEGKKYFKLM 396
AC+ A EG + L+
Sbjct: 270 ACAGASLAREGIQIHNLI 287
>gi|357163369|ref|XP_003579710.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 548
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 155/536 (28%), Positives = 247/536 (46%), Gaps = 75/536 (13%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
+ L +C R L Q+ A + G ++ S L + + ++ + +
Sbjct: 13 ATLLGRCRTARCLAQLHARIVRLGLHNHHSLLARFAAACDALASPSVADSFLSALPSHAV 72
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ NT++ S + L A M + + P+ F+F +L+AC + + G +H
Sbjct: 73 PLSIRNTVL-ASLSRHSSLRAALAQFNMIRRTAGPDAFSFPPLLRACAHVPCTSTGTALH 131
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
++ G + + FVR +LI F+ C A LFD V+W+++ Y GE+
Sbjct: 132 AAAIRLGLDADLFVRTALIQFYGRCRAAGAARALFDSMTIPSDVSWTAIIIVYVNSGEIV 191
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK------------------ 230
AR LFD +P R+LV WN M+ GY K G++E A LF E+P+
Sbjct: 192 AARELFDRIPHRNLVHWNAMVDGYVKCGDLESAGRLFEEMPRKTAAAHTSLIGGYAKAGN 251
Query: 231 -------------RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
RDV +W+AMISGY G +A +F E PD+ +++L+ A
Sbjct: 252 MEGAKLLFDKLQDRDVFAWSAMISGYAQNGYPGEAFRIFNEFHKQDICPDEPVIVALMAA 311
Query: 278 CADLGDLEVGKKVHCTLLDMTSGV--AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
C+ LG++ + + + + + + A VL G LI+M AKCG++ERA +F M RDV
Sbjct: 312 CSQLGNIMLARWIEGYIGSYSIDINNAHVLAG--LINMNAKCGNMERATVLFESMPVRDV 369
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
++ +++ G HG A +++ +F M + P F VL AC+HAG VEE KKYF +
Sbjct: 370 FSYCSMMQGHCLHGSANKAVELFSRMLLEGLSPDNAVFTVVLTACNHAGLVEEAKKYFGM 429
Query: 396 MRDEYNIEPNIRHYG---------------------------------------VHGDVE 416
M++ Y+I P+ HY + D E
Sbjct: 430 MKNVYSIVPSGDHYACLVSLLGRFGILRDAYEIIKSMPGEPHAGSWGALLGGCILQCDTE 489
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
LG++A K+L + D +G+YV LSNIYA+ W V K+R M + K G +L
Sbjct: 490 LGKIAAKKLFEIEPDNAGNYVTLSNIYANIDRWTDVSKIRAEMSRKGLTKIAGRTL 545
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 204/354 (57%), Gaps = 48/354 (13%)
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
A D S+L + YA+ L AR +FDE+ RD +N +++ YAK G ++ A +LF
Sbjct: 118 ASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFE 177
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLE 285
E+P R+VVSW AM+SGY G +++A+E F EM G +P+++T+ S+L ACA +G +E
Sbjct: 178 EMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAME 237
Query: 286 VGKKVHCTLLDMTSG---VAKVLHGNALIDMYAKCGSIERAIEVFLGM-RDRDVSTWSTL 341
+G+KV + G + V NAL++MY+KCGSI +A +VF G+ R +D+ +W+++
Sbjct: 238 LGRKVE----EYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSM 293
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I A HG E++A+F +++ V+P ITFVGV++AC+H G V EGK +F M E++
Sbjct: 294 IMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFS 353
Query: 402 IEPNIRHYGV---------------------------------------HGDVELGRLAN 422
++P I HYG HG+VEL LA
Sbjct: 354 LKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNVELAELAM 413
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+L+++ + + V+LSNIYAS G+W+ V +V KL+ + D KK G S IE D
Sbjct: 414 DKLIHLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFIELD 467
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 163/488 (33%), Positives = 236/488 (48%), Gaps = 71/488 (14%)
Query: 50 VIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFT- 107
V G +N A F KI P+ + T++ G ++ DA L+ +M E+ + N
Sbjct: 215 VRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLD 274
Query: 108 ----FSFVLKACTRLLYRNM-------------GFCVHGKIVKYGFEFNRFVRNSLI--- 147
S + +AC L+ M G GK+ + ++ N +
Sbjct: 275 GYVHLSPIEEACK--LFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKT 332
Query: 148 -----YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL 202
Y N D A +FDG D V W+++ +GY + G L A LF MP +D+
Sbjct: 333 ALMHGYLQRNMAD--DARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDM 390
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262
VSWN MI GYA+ G+M KA +F + +R+ VSWN++ISG+V AL F MR
Sbjct: 391 VSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRG 450
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
R D T S L ACA+L L VG+++H LL + + GNALI YAKCG I
Sbjct: 451 TNRADWSTYASCLRACANLAVLHVGRQLH-NLLVRSGHINDSFAGNALISTYAKCGRILE 509
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
A ++F M +D+ +W+ LI G A +G E+IA+FREM+ VRP E+TFVG+L ACSH
Sbjct: 510 AKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSH 569
Query: 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------------------- 410
AG ++EG +F M EY ++P HY
Sbjct: 570 AGLIDEGLFFFYSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWG 629
Query: 411 -------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463
+H + EL +LA +RL + ++ +YVLLSNI A G+W+ EK R + +
Sbjct: 630 ALLGACHMHKNHELAQLAAERLSELEPRKASNYVLLSNISAEAGKWDESEKARASIKEKG 689
Query: 464 IKKQPGCS 471
+ K PG +
Sbjct: 690 VNKPPGLA 697
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 163/339 (48%), Gaps = 36/339 (10%)
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
T YN +I G A++ DA+ L +M P+ +++ L T+ G
Sbjct: 143 TACYNAMISGYAKNGRFDDAMKLLREMPA----PDLVSWNSALAGLTQ----------SG 188
Query: 130 KIVKYGFEFNRFVR-----NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
++V+ F+ V+ N ++ GDLN AS F +V++W +L GY R
Sbjct: 189 EMVRAVQFFDEMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRA 248
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G ++ AR LFD MP R++V+WNVM+ GY +E+A +LF+E+P ++ +SW +ISG
Sbjct: 249 GRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLA 308
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLL--TACADLGDLEVGKKVHCTLLDMTSGVA 302
G ++A ++ ++M M L D + G +VH T+
Sbjct: 309 RAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVC------- 361
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
N +I Y +CG +E A+ +F M ++D+ +W+T+I G A G ++I +FR M
Sbjct: 362 ----WNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMN 417
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
R R T +++ V+ + + +F LMR N
Sbjct: 418 R---RNT-VSWNSVISGFVQNDRFVDALHHFMLMRRGTN 452
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 135/284 (47%), Gaps = 34/284 (11%)
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
N N+++ A G ++ A LFDG + V+W+++ A + G ++ ARSLFD MP
Sbjct: 48 NTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMP 107
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFE 257
VRD SW VM++ YA+ G++E A ++ + +P + +NAMISGY G A+++
Sbjct: 108 VRDEFSWTVMVSCYARGGDLELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLR 167
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL-DMTSG---------------- 300
EM + PD V+ S L G++ + ++ DMTS
Sbjct: 168 EMPA----PDLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWNLMLAGFVRTGDLNAA 223
Query: 301 ---VAKVLHGN-----ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
AK+ N L++ Y + G I A ++F M +R+V W+ ++ G E
Sbjct: 224 SSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIE 283
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
E+ +F EM I++ ++ + AGK++E K M
Sbjct: 284 EACKLFDEMP----IKNSISWTTIISGLARAGKLQEAKDLLDKM 323
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 125/290 (43%), Gaps = 46/290 (15%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM------ 259
N +T A+ G++ A LF+ +P R+ V++NAM+S G +A +F+ M
Sbjct: 22 NKELTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTV 81
Query: 260 ------------------RSVGER---PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
RS+ +R D+ + +++ A GDLE+ + V LD
Sbjct: 82 SWNAMIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDV----LDRM 137
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
G NA+I YAK G + A+++ M D+ +W++ + GL G ++ F
Sbjct: 138 PGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFF 197
Query: 359 REMQRLKVRPTEITFVGVLVAC-SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--VHGDV 415
EM + ++T +++A G + +F + PN+ + ++G
Sbjct: 198 DEMVK------DMTSWNLMLAGFVRTGDLNAASSFFAKIE-----SPNVISWVTLLNGYC 246
Query: 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
GR+A+ R L R E + V + + + +E+ KL D+ IK
Sbjct: 247 RAGRIADARDLFDRMPER-NVVAWNVMLDGYVHLSPIEEACKLFDEMPIK 295
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 152/509 (29%), Positives = 241/509 (47%), Gaps = 88/509 (17%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L ++C+++R +KQI +G + +L+ + + YAH +F I P+
Sbjct: 10 LLEQCSSMREMKQIHGHAITHGLARFAFISSKLL---AFYARSDLRYAHTLFSHIPFPNL 66
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR---LLYRNMGFCV 127
F YNTII + +P + + QM ++ PN TFS +L + L++ +
Sbjct: 67 FDYNTII----TAFSPHYSSLFFIQMLNAAVSPNSRTFSLLLSKSSPSLPFLHQ-----L 117
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H I++ G H + D +SL A Y+ G
Sbjct: 118 HSHIIRRG--------------HVS-----------------DFYVITSLLAAYSNHGST 146
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV--VSWNAMISGYVL 245
AR LFD+ P +++ W ++TGY G + A LF+ +P+R+ VS++AM+SGYV
Sbjct: 147 RAARRLFDQSPYKNVACWTSLVTGYCNNGLVNDARNLFDAIPERERNDVSYSAMVSGYVK 206
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
G ++ +++F E++ +P++ + S+L+ACA +G E GK +H + S L
Sbjct: 207 NGCFREGIQLFRELKDRNVKPNNSLLASVLSACASVGAFEEGKWIHAYVDQNKSQCYYEL 266
Query: 306 H-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
G ALID Y KCG +E A VF M+ +DV+ WS ++ GLA + +E++ +F EM+++
Sbjct: 267 ELGTALIDFYTKCGCVEPAQRVFGNMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKV 326
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------- 410
RP +TF+GVL AC+H E K F M D+Y I +I HYG
Sbjct: 327 GPRPNAVTFIGVLTACNHKDLFGEALKLFGYMSDKYGIVASIEHYGCVVDVLARSGKIEE 386
Query: 411 -------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
+H ++ELG K L+ + G YVLLSN+YA+
Sbjct: 387 ALEFIKSMEVEPDGVIWGSLLNGCFLHNNIELGHKVGKYLVELEPGHGGRYVLLSNVYAT 446
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
G+W V + RK M D + G S IE
Sbjct: 447 MGKWEAVLETRKFMKDRGVPAVSGSSFIE 475
>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
Length = 686
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/513 (29%), Positives = 243/513 (47%), Gaps = 87/513 (16%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNK 105
G G + A F I PD+F YNT++ S + DA L+ +M K S+ N
Sbjct: 74 GGYAANGRLTLALSFFRSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSYNV 133
Query: 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRN--------------------- 144
S L V + ++RN
Sbjct: 134 MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDAISW 193
Query: 145 -SLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
+L+ + C + A +F+ + DVV+W+++ +G+ARRG+++ AR LFD P+RD+
Sbjct: 194 NALMAGYVQCSQIEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVF 253
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM--RS 261
+W +++GYA+ G +E+A +F+ +P+++ VSWNAM++ YV M ++A E+F+ M R+
Sbjct: 254 TWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRN 313
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL--DMTSGVA---------------KV 304
V + ++LT A G L+ + + + D S A ++
Sbjct: 314 VA------SWNTMLTGYAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQL 367
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
MY KCG++E A F M +RD+ +W+T+I G A HGF +E++ +F M++
Sbjct: 368 FKEMGRCAMYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKT 427
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------- 410
+P +IT VGVL ACSH+G VE+G YF M ++ + HY
Sbjct: 428 STKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDE 487
Query: 411 -------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445
+H + ELGR A +++ + + +G YVLLSNIYAS
Sbjct: 488 AVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYAS 547
Query: 446 RGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
G+W V+K+R +M + +KK PG S IE +K
Sbjct: 548 SGKWRDVDKMRLMMHERGVKKVPGFSWIEVQNK 580
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 118/264 (44%), Gaps = 48/264 (18%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N+++ +A G L A F + D ++++L L+ AR+LFDEMPV+D V
Sbjct: 70 NAMLGGYAANGRLTLALSFFRSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSV 129
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
S+NVMI+ +A G + A F+ P++D VSWN M++ Y+ G ++A ++F+
Sbjct: 130 SYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSR---- 185
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
T D S NAL+ Y +C IE A
Sbjct: 186 -----------------------------TEWDAIS-------WNALMAGYVQCSQIEEA 209
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
++F M RDV +W+T++ G A G E+ +F V P F V +A
Sbjct: 210 QKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLF------DVAPIRDVFTWTAVVSGYA 263
Query: 384 --GKVEEGKKYFKLMRDEYNIEPN 405
G +EE K+ F M ++ + N
Sbjct: 264 QNGMLEEAKRVFDAMPEKNAVSWN 287
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 195/331 (58%), Gaps = 43/331 (12%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N ++ YA G+ E A ++F + +RD+V+WN+MI+G+ L G +AL +F EM G
Sbjct: 157 NSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVE 216
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAI 324
PD T++SLL+A A+LG LE+G++VH LL + G++K H N+L+D+YAKCG+I A
Sbjct: 217 PDGFTVVSLLSASAELGALELGRRVHVYLLKV--GLSKNSHVTNSLLDLYAKCGAIREAQ 274
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
VF M +R+ +W++LI GLA +GF EE++ +F+EM+ + P+EITFVGVL ACSH G
Sbjct: 275 RVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCG 334
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------------- 410
++EG +YF+ M++E I P I HYG
Sbjct: 335 MLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTL 394
Query: 411 -----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
+HG + LG +A LLN+ SGDYVLLSN+YAS W+ V+ +R+ M +K
Sbjct: 395 LGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVK 454
Query: 466 KQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
K PG SL+E ++ + ++ + P S ++
Sbjct: 455 KTPGYSLVELGNRVY-EFTMGDRSHPQSQDV 484
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 157/508 (30%), Positives = 255/508 (50%), Gaps = 92/508 (18%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNT 75
LR +Q+ V NGF +D L+ Y+ G ++ A ++F ++ D +YNT
Sbjct: 120 LREGEQVHVHVFKNGFQTDERIATTLVDLYARC----GRLDDARRVFDRLLVKDAQLYNT 175
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
+I ME ++ + F + + T L +G G
Sbjct: 176 MI---------------AAYMEAGEVELAEELFEVMPERNTHTLMEMVG----------G 210
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFD-GDAKMDVVAWSSLTAGYARRGELSMARSLF 194
+ GD+++A +F+ + +++V +++ +G+A+ G + ARS+F
Sbjct: 211 YSAR--------------GDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVF 256
Query: 195 DEMPVRDLVSWNVMI-TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
D M RD+ +WNVMI YAK G +E A ++F+ +P+R+VV W +MISGY G KQA+
Sbjct: 257 DGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAV 316
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH--CTLLDMTSGVAKVLHGNALI 311
++F +M+ G + DD T+ +++++C +G L++G+ VH C + + G++ N+LI
Sbjct: 317 KLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISV---KNSLI 373
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL-KVRPTE 370
DMY+KCG I++A E+F G+ RD +W+ +I G A +G + E++ +F +M+ +V P E
Sbjct: 374 DMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNE 433
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
ITF+GVL +CSH G VE+G +F M Y I P I HYG
Sbjct: 434 ITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIE 493
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
G+V L +R+ + G VLLSN+YA+ W
Sbjct: 494 EMPIAPDVAIWRSLLFACRARGEVGLAEYVAERVEELEPSRCGGNVLLSNVYATTSRWVD 553
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEADDKA 479
V KVR M S + K+PGCS+IE + A
Sbjct: 554 VNKVRTGMGRSRVSKRPGCSVIEVNGCA 581
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 17/217 (7%)
Query: 250 KQALEMFEEMR--SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
+ A+ ++ +M G RP T+ S+L A A L G++VH + + +
Sbjct: 84 RDAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERI-A 142
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
L+D+YA+CG ++ A VF + +D ++T+I G E + +F M R
Sbjct: 143 TTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPE---R 199
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI---EPNIRHYGVHGDVELGRLANKR 424
T T + ++ S G ++ K F++ N+ I + G V+ R
Sbjct: 200 NTH-TLMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDAR---SV 255
Query: 425 LLNMRKDESGDY-VLLSNIYASRGEWNRVEKVRKLMD 460
MR+ + + V++ +YA G VE RK+ D
Sbjct: 256 FDGMRQRDVATWNVMIGVMYAKCG---LVEDARKVFD 289
>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 662
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 219/380 (57%), Gaps = 42/380 (11%)
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
FE N N++I + GD+ +A LFD D +W+++ +GY ++ A +LF
Sbjct: 282 FERNVVSWNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNTMISGYVHVLDMEEASNLFH 341
Query: 196 EMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
+MP D +SWN+MI+GYA+ G +E A++ F +P++++VSWN++I+GY G A+ +
Sbjct: 342 KMPSPDTLSWNLMISGYAQSGSLELAHDFFERMPQKNLVSWNSVIAGYEKNGDYIGAINL 401
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
F +M+ GE+ D T+ SLL+ + + DL++G ++H L+ T + V NALI MY+
Sbjct: 402 FIQMQVEGEKSDRHTLSSLLSVSSGIVDLQLGMQIH-QLVSKTV-IPDVPLNNALITMYS 459
Query: 316 KCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
+CG+I A +F M+ ++V +W+ +IGG A HG+A E++ +F+ M+ KV+PT ITF+
Sbjct: 460 RCGAIFEARTIFYEMKLQKEVISWNAMIGGYASHGYATEALELFKLMRSFKVQPTYITFI 519
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
VL AC+HAG VEEG++ F+ M +Y +EP + H+
Sbjct: 520 SVLNACAHAGLVEEGRRIFESMVSDYGVEPRVEHFASLVDIVGRQGQLEEALDLINSMTI 579
Query: 411 ---------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
VH +VE+ R+A + L+ + D S Y+LL N+Y G+W+ ++
Sbjct: 580 EPDKAVWGALLGASRVHNNVEMARVAAEALMKLEPDSSVPYILLYNMYVDVGQWDNAAEI 639
Query: 456 RKLMDDSDIKKQPGCSLIEA 475
R +M+ ++IKK+ S +++
Sbjct: 640 RSMMERNNIKKEAAISWVDS 659
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 171/371 (46%), Gaps = 80/371 (21%)
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
N + N I G +N A LFD + + V W+S+ +GY +RGE++ AR LFDEMP
Sbjct: 46 NLYSSNKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEMP 105
Query: 199 VRDLVSWNV----------------------------------MITGYAKQGEMEKANEL 224
RD+VSWN+ MI+GYAK G M++A L
Sbjct: 106 ERDVVSWNLIISGYVSCRGKRFIEEGRNLFDKMPERCCVSWNTMISGYAKNGRMDEALGL 165
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS-LLTACADLGD 283
FN +P+++ VSWNAM+SG++ G +A+E F+ M ER DVT LS L++ +
Sbjct: 166 FNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRM---PER--DVTSLSALVSGLIQNSE 220
Query: 284 LEVGKKVHCTLLDM-TSGVAK--VLHG-NALIDMYAKCGSIERAIEVF------------ 327
L+ +++ LLD +G +K ++H N LI Y + G ++ A +F
Sbjct: 221 LDQAERI---LLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKG 277
Query: 328 -LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV--GVLVACSHAG 384
G +R+V +W+T+I G + +F +M P +F ++ H
Sbjct: 278 RTGRFERNVVSWNTMIMCYVKAGDVISARKLFDQM------PDRDSFSWNTMISGYVHVL 331
Query: 385 KVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELG-----RLANKRLLNMRK-----DE 432
+EE F M + N I Y G +EL R+ K L++ ++
Sbjct: 332 DMEEASNLFHKMPSPDTLSWNLMISGYAQSGSLELAHDFFERMPQKNLVSWNSVIAGYEK 391
Query: 433 SGDYVLLSNIY 443
+GDY+ N++
Sbjct: 392 NGDYIGAINLF 402
>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Cucumis sativus]
Length = 595
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 163/585 (27%), Positives = 274/585 (46%), Gaps = 126/585 (21%)
Query: 10 RLWKKCTN---LRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVK 64
RL + CT+ R KQ+ A + ++ D+ +LI YS S G+I A+ +F K
Sbjct: 8 RLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKS----GSIRDAYNVFGK 63
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM---EKCSIKPNKFTFSFVLKACTRLLYR 121
I + F +N ++ D + L++ + +KP++FT + LKA L+
Sbjct: 64 IPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALAS-LFS 122
Query: 122 NMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
N G VH I++ G E++ FV N+LI F++ C +L A ++FD + D+V+W+++ A
Sbjct: 123 NSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLA 182
Query: 180 GYARRGELSMARSLF---------------------------------------DEMPVR 200
GY++ G + LF +E ++
Sbjct: 183 GYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIK 242
Query: 201 -DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE- 258
D+ WN +I YAK G ++ A ELF E+ ++D +++ +MISGY++ G QA+++F E
Sbjct: 243 MDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQ 302
Query: 259 ------------------------------MRSVGERPDDVTMLSLLTACADLGDLEVGK 288
M+S G RP+ VT+ S+L + L+ GK
Sbjct: 303 ERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGK 362
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
++H + T + A+ID YAKCG + A VF ++ R + W+++I A H
Sbjct: 363 EIHGYAIRNTYD-RNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVH 421
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH 408
G A ++++F EM ++P ++TF VL AC+H+G+++E K F ++ EY I+P + H
Sbjct: 422 GDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEH 481
Query: 409 YG---------------------------------------VHGDVELGRLANKRLLNMR 429
Y V GDVELG+ RL +
Sbjct: 482 YACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIE 541
Query: 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ +G+YV+++N+Y+ G W + +R LM + +KK PG S IE
Sbjct: 542 PENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIE 586
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 174/298 (58%), Gaps = 40/298 (13%)
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
G+ + A LF+E+P RDVVSWN+M++ Y CG +AL +F++MR+VG +P + T++SLL
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+ACA LG L+ G +H + D V ++ G AL+DMYAKCG I A +VF M +DV
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIV-GTALVDMYAKCGKISLATQVFNAMESKDV 280
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
W+T+I G+A HG +E+ +F+EM+ V P +ITFV +L ACSHAG V+EG+K
Sbjct: 281 LAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDC 340
Query: 396 MRDEYNIEPNIRHYG---------------------------------------VHGDVE 416
M Y IEP + HYG +HG+ E
Sbjct: 341 MSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFE 400
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
LG + KRL+N++ SG Y+LLSNIYA+ +W+ KVR LM + I K PG S+IE
Sbjct: 401 LGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIE 458
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 51/250 (20%)
Query: 147 IYFHAN---CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------ 197
++ H N G + A LF DVV+W+S+ A YA+ G+ + A +LFD+M
Sbjct: 152 VWMHNNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVK 211
Query: 198 ----PVRDLVS-----------------------------WNVMITGYAKQGEMEKANEL 224
V L+S ++ YAK G++ A ++
Sbjct: 212 PTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQV 271
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
FN + +DV++WN +I+G + G K+A +F+EM+ G P+D+T +++L+AC+ G +
Sbjct: 272 FNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMV 331
Query: 285 EVGKKVHCTLLDMTS---GV-AKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWS 339
+ G+K LLD S G+ KV H +ID+ A+ G +E A+E+ M + +
Sbjct: 332 DEGQK----LLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALG 387
Query: 340 TLIGGLAFHG 349
L+GG HG
Sbjct: 388 ALLGGCRIHG 397
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 121/251 (48%), Gaps = 16/251 (6%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A +F ++ D +N+++ AQ P +A+ L+ QM +KP + T +L AC
Sbjct: 167 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 226
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
L + G +H I E N V +L+ +A CG ++ A+ +F+ DV+AW+++
Sbjct: 227 LGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTI 286
Query: 178 TAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV----- 228
AG A G + A+ LF EM + +++ M++ + G +++ +L + +
Sbjct: 287 IAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYG 346
Query: 229 --PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
PK V + +I G+ ++A+E+ M P+ + +LL C G+ E+
Sbjct: 347 IEPK--VEHYGCVIDLLARAGLLEEAMELIGTMPM---EPNPCALGALLGGCRIHGNFEL 401
Query: 287 GKKVHCTLLDM 297
G+ V L+++
Sbjct: 402 GEMVGKRLINL 412
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I+ A ++F + D +NTII G A + +A L+ +M++ ++PN TF +L
Sbjct: 263 GKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAML 322
Query: 113 KACTRLLYRNMG----------FCVHGKIVKYGFEFNRFVRNSLI 147
AC+ + G + + K+ YG + R L+
Sbjct: 323 SACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLL 367
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 225/461 (48%), Gaps = 106/461 (22%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRG--SAQSQNPL-DAVFLYTQMEKC-SIKPNKFTFSFVL 112
YA +F +I EP F YN++IR SA P D V +Y +M + S PN FT +F L
Sbjct: 76 YARNLFDQIPEPTAFCYNSLIRALSSAAGVAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 135
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC+ + G +H + + G E + +V+ L+ +A C
Sbjct: 136 KACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCE------------------ 177
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
E+++AR++FD M V ++
Sbjct: 178 -------------EVALARTVFDGM------------------------------VGDKN 194
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+ +W+AMI GY GM +AL +F EM++ PD+VTM+S+++ACA G L++G+ VH
Sbjct: 195 LAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVH- 253
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+D + ALIDMYAKCG IERA VF M +RD WS +I GLA HG E
Sbjct: 254 AFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVE 313
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH 412
++ +F M LKVRP +TF+GVL AC+H+G V EG++Y+ M+ E I+P++ +YG
Sbjct: 314 VALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQ-ELGIKPSMENYGCM 372
Query: 413 GDV---------------------------------------ELGRLANKRLLNMRKDES 433
D+ ++ + A+K+LL +
Sbjct: 373 VDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNP 432
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+YVLLSN+YAS +W+RV +RK M ++++ GCS IE
Sbjct: 433 ENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIE 473
>gi|222635245|gb|EEE65377.1| hypothetical protein OsJ_20684 [Oryza sativa Japonica Group]
Length = 769
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/391 (35%), Positives = 206/391 (52%), Gaps = 42/391 (10%)
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H + + GFE N NS++ + GD+ +A LF+ D+V+W+++ +GY + ++
Sbjct: 75 HNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDM 134
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
+ LF EMP D VSWN++I G+ ++GE E A F+ +P+R +SWN MISGY G
Sbjct: 135 KESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNG 194
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
++++F +M VGE PD T S+L ACA + L +G ++H L S V
Sbjct: 195 NYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIH--QLVEKSFVPDTAIS 252
Query: 308 NALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
NALI MY++CG++ A +F M +D+ +W+ LIG HG A +++ +F+EM+R KV
Sbjct: 253 NALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKV 312
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY-------GVHGDVE--- 416
PT ITFV +L AC +AG V EG+ F M EY I I HY G HG ++
Sbjct: 313 MPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDAL 372
Query: 417 -----------------------------LGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
L ++A K L + D S YVL+ N++A G
Sbjct: 373 EVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHEG 432
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+W VR+ M+ I KQPG S I+ + K
Sbjct: 433 KWGSAAVVREEMERQGIYKQPGYSWIDLEGK 463
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 148/307 (48%), Gaps = 29/307 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F ++ + D +NT+I G Q+ + ++ L+ +M P+ +++ ++
Sbjct: 101 GDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPD----PDTVSWNLII 156
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVR------NSLIYFHANCGDLNTASVLFDGD 166
+ + G H + GF F+R N++I + G+ ++ LF
Sbjct: 157 QG-----FMQKGEAEHAR----GF-FDRMPERGTISWNTMISGYEKNGNYISSVKLFSKM 206
Query: 167 AKM----DVVAWSSLTAGYARRGELSMA---RSLFDEMPVRDLVSWNVMITGYAKQGEME 219
++ D +SS+ A A L + L ++ V D N +IT Y++ G +
Sbjct: 207 LEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALN 266
Query: 220 KANELFNEV-PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
A +F ++ K+D+VSWNA+I Y G +AL++F+EMR P +T +SLL+AC
Sbjct: 267 DAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSAC 326
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVST 337
+ G + G+ V T++ VA++ H AL+++ + G ++ A+EV M D S
Sbjct: 327 VNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSV 386
Query: 338 WSTLIGG 344
W +G
Sbjct: 387 WGAFLGA 393
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 101/256 (39%), Gaps = 63/256 (24%)
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANE--------------------------------- 223
MP +D S + M++G+ K G + +A E
Sbjct: 1 MPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSD 60
Query: 224 ---LFNEVPK--------------RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
LF+ +PK R+VVSWN+M+ Y+ G A +F EM P
Sbjct: 61 AKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEM------P 114
Query: 267 DD--VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
D V+ ++++ D++ +K+ + D + N +I + + G E A
Sbjct: 115 DKDLVSWNTMISGYTQASDMKESEKLFWEMPD-----PDTVSWNLIIQGFMQKGEAEHAR 169
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
F M +R +W+T+I G +G S+ +F +M + P TF VL AC+
Sbjct: 170 GFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIP 229
Query: 385 KVEEGKKYFKLMRDEY 400
+ G + +L+ +
Sbjct: 230 MLGLGAQIHQLVEKSF 245
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/508 (28%), Positives = 247/508 (48%), Gaps = 81/508 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
+ KC ++++ ++ ++ + N+ S + YS S G N AH + ++ +P+
Sbjct: 58 FYSKCDSIQSAHKVFHVLPVK--NTHSWNIIISAYSRS----GLFNEAHNLLDQMPKPNL 111
Query: 71 FMYNTIIRGSAQSQNPLDAVFLY-TQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVH 128
YN++I G +++ ++ T +++CS + ++FT ++ +C L + VH
Sbjct: 112 VSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVH 171
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G + G N + N+LI DA Y + GE
Sbjct: 172 GAAIIIGLNSNIIIGNALI------------------DA-------------YGKCGEPD 200
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
++ S+F MP RD+VSW M+ YA+ +E A+ LF+++ +++ VSW A+I+G+ G
Sbjct: 201 ISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGR 260
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT--SGVAKVLH 306
+AL +FE+MR G P T S+L+ACADL + GK++H ++ T +
Sbjct: 261 GDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFI 320
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
NALIDMY KCG + A +F GM ++D+ +W++LI G A +G EES+A+F M +
Sbjct: 321 LNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADI 380
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------- 410
RP +TF+G+L AC H G V EG + M +Y + P HY
Sbjct: 381 RPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAM 440
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
+HG+++L R A + L + + YV++ NIYA+
Sbjct: 441 GLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAA 500
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
W+ +VR+LM + ++K+ CS IE
Sbjct: 501 SRWDEARQVRRLMMERGLRKEAACSWIE 528
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 145/327 (44%), Gaps = 69/327 (21%)
Query: 100 SIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTA 159
S+ P +S ++ C + +G +H +K F F+ N LI F++ C + +A
Sbjct: 9 SLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSA 68
Query: 160 SVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
+F + +W+ + + Y+R G + A +L D+MP +LVS+N +I+G
Sbjct: 69 HKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHH---- 124
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM--RSVGERPDDVTMLSLLTA 277
G K++L +F+ M + D+ T++SL+ +
Sbjct: 125 ---------------------------GFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGS 157
Query: 278 CADLGDLEVGKKVH--CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
CA LG E+ ++VH ++ + S ++ GNALID Y KCG + + +F M +RDV
Sbjct: 158 CASLGAPELLRQVHGAAIIIGLNS---NIIIGNALIDAYGKCGEPDISFSIFSRMPERDV 214
Query: 336 STWST-------------------------------LIGGLAFHGFAEESIAMFREMQRL 364
+W++ LI G A +G +E++ +F +M+
Sbjct: 215 VSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREE 274
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKK 391
+ P+ TF VL AC+ + GK+
Sbjct: 275 GIPPSAFTFASVLSACADLALIARGKE 301
>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
Length = 701
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 240/484 (49%), Gaps = 67/484 (13%)
Query: 50 VIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-----CSIKPN 104
V G ++ A F +I P+ + T++ G ++ DA L+ +M + C++ +
Sbjct: 216 VRAGDLDAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVVACNVMLD 275
Query: 105 KFT-FSFVLKACTRLLYRNM-------------GFCVHGKIVKYGFEFNRF------VRN 144
+ S + +AC L+ M G GK+ + ++ +
Sbjct: 276 GYVRLSRLEEACK--LFDEMPGKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKT 333
Query: 145 SLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS 204
+L++ + +N A +FDG D V W+++ +GY +RG L A LF MP +D VS
Sbjct: 334 ALMHGYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKDTVS 393
Query: 205 WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
WN MI GYA+ G+M KA +F + +++ VSWN++ISG+V G+ A F MR
Sbjct: 394 WNTMIAGYAQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTN 453
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
R D T S L ACA+L L VG+++H +LL + + + NALI YAKCG + A
Sbjct: 454 RADWSTYASCLRACANLAALHVGRQLH-SLLVRSGHINDLFARNALISTYAKCGRMLEAK 512
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
++F M +D+ +W+ L+ G A +G E+I++FREM+ VRP E+TFVG+L ACS AG
Sbjct: 513 QIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRAG 572
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV----------------------------- 415
++EG +F M +EY+++P HY D+
Sbjct: 573 LIDEGLGFFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGMQIQPNAGVWGAL 632
Query: 416 ----------ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
EL RLA ++L + + +YVLLSNI A G+W+ EK R + +
Sbjct: 633 LGACQMYKNHELARLAAEKLSELEPCRASNYVLLSNISAEAGKWDEAEKARASIKEKGAN 692
Query: 466 KQPG 469
K PG
Sbjct: 693 KPPG 696
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 159/339 (46%), Gaps = 35/339 (10%)
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR--LLYRNMGF-- 125
T YN +I G A++ DAV L +M P+ F+++ L T+ + R + F
Sbjct: 143 TACYNAMISGYAKNGRFDDAVKLLREMPA----PDLFSWNSALAGLTQSGQMVRAVQFFD 198
Query: 126 -CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
V +V + FVR GDL+ A+ F +VV+W +L GY R
Sbjct: 199 EMVEKDMVSWNLMLEGFVR---------AGDLDAAASFFGRIESPNVVSWVTLLNGYCRA 249
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
G +S AR LFD MP R++V+ NVM+ GY + +E+A +LF+E+P ++ +SW +ISG
Sbjct: 250 GRISDARDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGKNSISWTTIISGLA 309
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLL--TACADLGDLEVGKKVHCTLLDMTSGVA 302
G ++A ++ ++M M L D + G +VH T+
Sbjct: 310 RAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMVNDARQIFDGMEVHDTVC------- 362
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
N +I Y + G +E A+ +F M ++D +W+T+I G A G ++I +FR M
Sbjct: 363 ----WNTMISGYVQRGMLEEAMLLFQRMPNKDTVSWNTMIAGYAQGGQMRKAIGIFRRMS 418
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
R +++ V+ G + +F LMR N
Sbjct: 419 ----RKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTN 453
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 128/283 (45%), Gaps = 21/283 (7%)
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
F N + A G L A LFD + + V ++S+ + AR G + AR+LFD MP R
Sbjct: 19 FRSNQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSR 78
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
+ VSWN MI + G + A LF+ +P RD SW M+S Y G + A ++ + M
Sbjct: 79 NAVSWNAMIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDVLDRM- 137
Query: 261 SVGERPDDVTMLSLLTACADL---GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
P D TAC + G + G+ L + N+ + +
Sbjct: 138 -----PGDKC-----TACYNAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQS 187
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
G + RA++ F M ++D+ +W+ ++ G G + + + F ++ P +++V +L
Sbjct: 188 GQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIE----SPNVVSWVTLL 243
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRL 420
AG++ + + F M + + N+ + G V L RL
Sbjct: 244 NGYCRAGRISDARDLFDRMPERNVVACNVM---LDGYVRLSRL 283
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 124/285 (43%), Gaps = 43/285 (15%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM------ 259
N +T A+ G++ A LF+ +P+R+ V++N+M+S G +A +F+ M
Sbjct: 22 NQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSRNAV 81
Query: 260 ------------------RSVGER---PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
R + +R DD + +++ A G+LE+ + V LD
Sbjct: 82 SWNAMIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDV----LDRM 137
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
G NA+I YAK G + A+++ M D+ +W++ + GL G ++ F
Sbjct: 138 PGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQSGQMVRAVQFF 197
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--VHGDVE 416
EM V +++ +L AG ++ +F + PN+ + ++G
Sbjct: 198 DEM----VEKDMVSWNLMLEGFVRAGDLDAAASFFGRIE-----SPNVVSWVTLLNGYCR 248
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
GR+++ R L R E + V + + +R+E+ KL D+
Sbjct: 249 AGRISDARDLFDRMPER-NVVACNVMLDGYVRLSRLEEACKLFDE 292
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 10/164 (6%)
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
V N + A+ G + A +F M R+ T+++++ LA HG +E+ A+F M
Sbjct: 18 VFRSNQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPS 77
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM--RDEYNIEPNIRHYGVHGDVELGRLA 421
+++ ++ A S G+V + + F M RD+++ + Y G++EL R
Sbjct: 78 RNA----VSWNAMIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDV 133
Query: 422 NKRLLNMRKDE-SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
R M D+ + Y + + YA G ++ K+ + M D+
Sbjct: 134 LDR---MPGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAPDL 174
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 211/367 (57%), Gaps = 45/367 (12%)
Query: 170 DVVAWSSLTAGYARRGELSMA---RSLFDEMPV-RDLVSWNVMITGYAKQGEMEKANELF 225
B + +++ + A+ G+L M + L D + +++ M+ Y K G ++ +F
Sbjct: 5 BEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVF 64
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+ + +RDVV W+AMI+GY G + +ALE+FE M+S +P+DVT++S+L+ACA LG +E
Sbjct: 65 DHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSVE 124
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
G+++ + ++ ++ V +AL+ MY+KCG+I +A ++F + RD TW+++I GL
Sbjct: 125 TGERIG-SYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGL 183
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
A +GFAE++IA++ M+ ++V+P ITFVG+L AC+HAG VE G ++F+ MR ++NI PN
Sbjct: 184 AINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSMRSDHNISPN 243
Query: 406 IRHYG---------------------------------------VHGDVELGRLANKRLL 426
I H+ +H +VEL LA K+LL
Sbjct: 244 IEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLL 303
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFN 486
+ D SG+YV+LSNIYAS W KVRKLM D ++K S +E +D+ ++L
Sbjct: 304 ELEPDNSGNYVILSNIYASASRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRVH-KFLVG 362
Query: 487 LKPKPNS 493
P S
Sbjct: 363 DTSHPRS 369
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 156/340 (45%), Gaps = 45/340 (13%)
Query: 102 KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASV 161
+PB+ T + VL C +L MG + N V +++ + CG ++ +
Sbjct: 3 EPBEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRL 62
Query: 162 LFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM------------------------ 197
+FD A+ DVV WS++ AGYA+ G + A LF+ M
Sbjct: 63 VFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGS 122
Query: 198 -----------PVRDLVSWNVMITG-----YAKQGEMEKANELFNEVPKRDVVSWNAMIS 241
R L+S NV + Y+K G + KA ++F+++P+RD V+WN+MI
Sbjct: 123 VETGERIGSYVESRGLIS-NVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIM 181
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
G + G + A+ ++ M+ + +P+++T + LLTAC G +E+G + ++ +
Sbjct: 182 GLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSMRSDHNIS 241
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
+ H ++D++ + G + A E M + +V W TL+ H E +A
Sbjct: 242 PNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVE--LAELAG 299
Query: 361 MQRLKVRPTEI-TFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+ L++ P +V + + A + +E K KLM+D+
Sbjct: 300 KKLLELEPDNSGNYVILSNIYASASRWQEALKVRKLMKDK 339
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 18/294 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
GA++ +F + D ++ +I G AQ+ +A+ L+ M+ IKPN T VL
Sbjct: 55 GAVDDGRLVFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVL 114
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC +L G + + G N +V ++L+ ++ CG++ A +FD + D V
Sbjct: 115 SACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNV 174
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNEV 228
W+S+ G A G A +L++ M ++ N+ ++T G +E E F +
Sbjct: 175 TWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSM 234
Query: 229 PKRDVVSWN-----AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+S N ++ + G A E M P+ V +LL+A +
Sbjct: 235 RSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEV---EPNVVIWGTLLSASRIHLN 291
Query: 284 LEVGKKVHCTLLDMTSGVAKVLHGNALI--DMYAKCGSIERAIEVFLGMRDRDV 335
+E+ + LL++ + GN +I ++YA + A++V M+D+ V
Sbjct: 292 VELAELAGKKLLELEPDNS----GNYVILSNIYASASRWQEALKVRKLMKDKRV 341
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 151/512 (29%), Positives = 246/512 (48%), Gaps = 88/512 (17%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSDS----SALRELIYSGSVVIPGA------ 54
R S L K C L+ L Q A +G S S S ++++ + + P A
Sbjct: 418 RTSCSYLLKLCRTLKHLHQFHAQFITSGRISSSLNQNSVFANVLFAITSISPSASTSNVV 477
Query: 55 INYAHKMFVKITEPDTFMYNTIIR-GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
++YA + IT P TF +NTIIR + L + + +M + S+ P+ T+ FV K
Sbjct: 478 VSYATSVLRFITNPSTFCFNTIIRIYTLHEPLSLSSQRFFVEMRRRSVPPDFHTYPFVFK 537
Query: 114 ACTRLLYRNMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
AC ++ +H + +++G + F N+LI
Sbjct: 538 ACAAKKNGDLSLVKTLHCQALRFGLLSDLFTLNTLI------------------------ 573
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
Y+ + A LFDE P RD+V++NV+I G K E+ +A ELF+ +P R
Sbjct: 574 -------RAYSLMAPIGSALQLFDENPQRDVVTYNVLIDGLVKACEIVRARELFDSMPFR 626
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
D+VSWN++I+GY ++A+ +F+EM +G +PD+V ++S L+ACA GDLE GK +H
Sbjct: 627 DLVSWNSLIAGYAQMNQCREAISLFDEMIGLGLKPDNVAIVSTLSACAQSGDLEKGKAIH 686
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ L L+D YAKCG I+ A+E+F D+ + TW+ +I GLA HG
Sbjct: 687 DYTKKKRLFIDSFL-ATGLVDFYAKCGFIDTAMEIFHLSSDKTLFTWNAMITGLAMHGNG 745
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
E ++ F +M ++P ++F+ VLV CSH+G V E +K F MR Y+++ ++HYG
Sbjct: 746 ELTVDYFHKMVSSGIKPDGVSFISVLVGCSHSGLVGEARKLFDQMRSLYDVDREMKHYGC 805
Query: 411 ------------------------------------------VHGDVELGRLANKRLLNM 428
+HG++E+ A KR+ +
Sbjct: 806 MADLLGRAGLIEEAAEMIEQMPKDGGKREKLLAWSGLLGGCRIHGNIEVAEKAAKRVKAL 865
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
++ G Y ++ +YA+ W V KVR++++
Sbjct: 866 SPEDGGVYKVMVEMYANAERWEDVVKVREMIE 897
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/498 (30%), Positives = 239/498 (47%), Gaps = 78/498 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
+++ G SDS L+ G G + HK+F ++ E D +N +I
Sbjct: 50 EKVHGYAVKTGLESDSYVCNSLM--GMYAALGKMEITHKVFDEMPERDVVSWNGLISSYV 107
Query: 82 QSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
DA+ ++ +M + S +K ++ T L AC+ L +G ++ +V FE +
Sbjct: 108 GHGRFEDAISVFQRMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVVTE-FEMSV 166
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
N+L+ CG L+ A R++FD M +
Sbjct: 167 RTGNALVDMFCKCGCLDKA-------------------------------RAIFDSMRDK 195
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
++ W M++GY G ++A ELF P +DVV W AM++GYV +ALE+F M+
Sbjct: 196 NVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQ 255
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
+ RPD+ ++SLLT CA G LE GK +H + + V KV+ G AL+DMYAKCG I
Sbjct: 256 TARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVV-GTALVDMYAKCGCI 314
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
E A+ VF M++RD ++W++LI GLA +G + ++ ++ EM+ + VR +ITFV VL AC
Sbjct: 315 ETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVLTAC 374
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------------------------- 411
SH G V EG++ F M + + I+P HY
Sbjct: 375 SHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAEELIDKMHGERDKTL 434
Query: 412 -------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
+G+V++ ++L + +S + LL+++YAS W V VR+
Sbjct: 435 VPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRK 494
Query: 459 MDDSDIKKQPGCSLIEAD 476
M D I+K PGCS IE D
Sbjct: 495 MKDLGIRKFPGCSSIEVD 512
>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
Length = 695
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/391 (35%), Positives = 206/391 (52%), Gaps = 42/391 (10%)
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H + + GFE N NS++ + GD+ +A LF+ D+V+W+++ +GY + ++
Sbjct: 227 HNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDM 286
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
+ LF EMP D VSWN++I G+ ++GE E A F+ +P+R +SWN MISGY G
Sbjct: 287 KESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNG 346
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
++++F +M VGE PD T S+L ACA + L +G ++H L S V
Sbjct: 347 NYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIH--QLVEKSFVPDTAIS 404
Query: 308 NALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
NALI MY++CG++ A +F M +D+ +W+ LIG HG A +++ +F+EM+R KV
Sbjct: 405 NALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKV 464
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY-------GVHGDVE--- 416
PT ITFV +L AC +AG V EG+ F M EY I I HY G HG ++
Sbjct: 465 MPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDAL 524
Query: 417 -----------------------------LGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
L ++A K L + D S YVL+ N++A G
Sbjct: 525 EVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHEG 584
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+W VR+ M+ I KQPG S I+ + K
Sbjct: 585 KWGSAAVVREEMERQGIYKQPGYSWIDLEGK 615
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 14/260 (5%)
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQ 215
L A LFD + DVV W++L YARRG + AR LFDEMP R+ SWN M+TG+
Sbjct: 81 LAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAA 140
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML-SL 274
G++ KA ++F+ +P +D S + M+SG+ GM +A E+ + SV + V +L
Sbjct: 141 GQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTL 200
Query: 275 LTACADLGDLEVGKKV---------HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
+ A G K++ +L V+ N+++ Y K G + A
Sbjct: 201 IVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARA 260
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+F M D+D+ +W+T+I G +ES +F EM P +++ ++ G+
Sbjct: 261 LFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMP----DPDTVSWNLIIQGFMQKGE 316
Query: 386 VEEGKKYFKLMRDEYNIEPN 405
E + +F M + I N
Sbjct: 317 AEHARGFFDRMPERGTISWN 336
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 148/307 (48%), Gaps = 29/307 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F ++ + D +NT+I G Q+ + ++ L+ +M P+ +++ ++
Sbjct: 253 GDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPD----PDTVSWNLII 308
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVR------NSLIYFHANCGDLNTASVLFDGD 166
+ + G H + GF F+R N++I + G+ ++ LF
Sbjct: 309 QG-----FMQKGEAEHAR----GF-FDRMPERGTISWNTMISGYEKNGNYISSVKLFSKM 358
Query: 167 AKM----DVVAWSSLTAGYARRGELSMA---RSLFDEMPVRDLVSWNVMITGYAKQGEME 219
++ D +SS+ A A L + L ++ V D N +IT Y++ G +
Sbjct: 359 LEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALN 418
Query: 220 KANELFNEV-PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
A +F ++ K+D+VSWNA+I Y G +AL++F+EMR P +T +SLL+AC
Sbjct: 419 DAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSAC 478
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVST 337
+ G + G+ V T++ VA++ H AL+++ + G ++ A+EV M D S
Sbjct: 479 VNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSV 538
Query: 338 WSTLIGG 344
W +G
Sbjct: 539 WGAFLGA 545
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 129/307 (42%), Gaps = 59/307 (19%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N+L+ +A G ++ A LFD + + +W+++ G+ G++ A +FD MP +D
Sbjct: 100 NTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSA 159
Query: 204 SWNVMITGYAKQGEMEKANE------------------------------------LFNE 227
S + M++G+ K G + +A E LF+
Sbjct: 160 SLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDM 219
Query: 228 VPK--------------RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
+PK R+VVSWN+M+ Y+ G A +F EM D V+ +
Sbjct: 220 IPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPD----KDLVSWNT 275
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
+++ D++ +K+ + D + N +I + + G E A F M +R
Sbjct: 276 MISGYTQASDMKESEKLFWEMPD-----PDTVSWNLIIQGFMQKGEAEHARGFFDRMPER 330
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
+W+T+I G +G S+ +F +M + P TF VL AC+ + G +
Sbjct: 331 GTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIH 390
Query: 394 KLMRDEY 400
+L+ +
Sbjct: 391 QLVEKSF 397
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 17/224 (7%)
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
A R G AR LFD +P R +V+WN ++ G A++ + A E F+ +P RD VSWN
Sbjct: 8 AALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAVSWNT 67
Query: 239 MISGYVLCGMNKQ---ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
+++ Y A +F+EM + D VT +LL A A G ++ +++ +
Sbjct: 68 LLAAYSASPHPDHLAAARRLFDEM----PQRDVVTWNTLLGAYARRGLMDEARRLFDEMP 123
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
+ N ++ + G + +A++VF M +D ++ ST++ G +G E+
Sbjct: 124 QRNAA-----SWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAE 178
Query: 356 AMFREMQRLKVRPTEI---TFVGVLVACSHAGKVEEGKKYFKLM 396
+ +RL V + + ++VA AG+ + K+ F ++
Sbjct: 179 ELL--TKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMI 220
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N + + G A LF+ +P R VV+WN++++G + A E F+ M V +
Sbjct: 4 NRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAM-PVRDA 62
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
T+L+ +A L +++ + V+ N L+ YA+ G ++ A
Sbjct: 63 VSWNTLLAAYSASPHPDHLAAARRLFDEMPQR-----DVVTWNTLLGAYARRGLMDEARR 117
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+F M R+ ++W+T++ G G +++ +F M
Sbjct: 118 LFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAM 153
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/515 (28%), Positives = 264/515 (51%), Gaps = 57/515 (11%)
Query: 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKI----TEPDTFMYNTIIRGSAQSQNPLDA 89
N ++S+ +I S + + G +N A +F ++ +PD +N ++ G +
Sbjct: 297 NRNTSSWNSMISSYAAL--GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEV 354
Query: 90 VFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF 149
+ + +M+ KPN + + VL+A + L + NMG HG +++ GF+ + +V SLI
Sbjct: 355 LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 414
Query: 150 HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSW 205
+ L +A +FD ++ AW+SL +GY+ +G A L ++M DLV+W
Sbjct: 415 YVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTW 474
Query: 206 NVMITGYAKQGEMEKANELFNEVPK----RDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
N MI+GYA G ++A + ++ +VVSW A+ISG G N+ +L+ F +M+
Sbjct: 475 NGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQ 534
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAKCGSI 320
G P+ ++ LL ACA L L+ GK++HC L + +G + V ALIDMY+K S+
Sbjct: 535 EGVMPNSASITCLLRACASLSLLQKGKEIHC--LSIRNGFIEDVFVATALIDMYSKSSSL 592
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
+ A +VF ++++ +++W+ +I G A G +E+I++F EMQ++ V P ITF +L AC
Sbjct: 593 KNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSAC 652
Query: 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------ 410
++G + EG KYF M +Y I P + HY
Sbjct: 653 KNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATI 712
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+H +++ A K L + + S +Y+L+ N+Y+ W ++ +R+LM
Sbjct: 713 WGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGA 772
Query: 462 SDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
+ ++ + S I+ + + + + + KP P++G +
Sbjct: 773 AGVRNRQVWSWIQINQRVHV-FSSDEKPHPDAGKI 806
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 169/325 (52%), Gaps = 38/325 (11%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A+++F ++ P+ ++N I + QS+ V L+ +M+ +K T VL+AC +
Sbjct: 187 ANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGK 246
Query: 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+ N +HG + ++G + DV + L
Sbjct: 247 MGALNAAKQIHGYVFRFGLD-------------------------------SDVSLCNPL 275
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP----KRDV 233
+ Y++ G+L +AR +FD M R+ SWN MI+ YA G + A LF E+ K D+
Sbjct: 276 ISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDI 335
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
V+WN ++SG+ L G ++ L + + M+ G +P+ +M S+L A ++LG L +GK+ H
Sbjct: 336 VTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGY 395
Query: 294 LLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+L +G V G +LIDMY K S+ A VF M++R++ W++L+ G +F G E
Sbjct: 396 VL--RNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE 453
Query: 353 ESIAMFREMQRLKVRPTEITFVGVL 377
+++ + +M++ ++P +T+ G++
Sbjct: 454 DALRLLNQMEKEGIKPDLVTWNGMI 478
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 116/231 (50%), Gaps = 15/231 (6%)
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
Y + +EKAN++F+E+P + + WN I + ++ +E+F +M+ + + T+
Sbjct: 178 YGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATI 237
Query: 272 LSLLTACADLGDLEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
+ +L AC +G L K++H + + S V+ N LI MY+K G +E A VF
Sbjct: 238 VRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLC---NPLISMYSKNGKLELARRVFDS 294
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M +R+ S+W+++I A GF ++ ++F E++ ++P +T+ +L G EE
Sbjct: 295 MENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEV 354
Query: 390 KKYFKLMRDEYNIEPNIRHYG--VHGDVELGRLANKRLLNMRKDESGDYVL 438
+ M+ E +PN + ELG LNM K+ G YVL
Sbjct: 355 LNILQRMQGE-GFKPNSSSMTSVLQAISELG------FLNMGKETHG-YVL 397
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 114/265 (43%), Gaps = 11/265 (4%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY-VLCGMNKQALEMFEEMRSVGERP 266
+I+ Y G+ A +F R+ + WN+ + + G LE+F+E+ G
Sbjct: 72 LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVF 131
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D L C + D+ +G ++H L+ + L AL++ Y +C +E+A +V
Sbjct: 132 DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRC-ALMNFYGRCWGLEKANQV 190
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F M + + W+ I ++ + +FR+MQ ++ T V VL AC G +
Sbjct: 191 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 250
Query: 387 EEGKKY------FKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440
K+ F L D P I Y +G +EL R + N R S + ++ S
Sbjct: 251 NAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMEN-RNTSSWNSMISS 309
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIK 465
YA+ G N + ++ SD+K
Sbjct: 310 --YAALGFLNDAWSLFYELESSDMK 332
>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 908
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/391 (35%), Positives = 206/391 (52%), Gaps = 42/391 (10%)
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H + + GFE N NS++ + GD+ +A LF+ D+V+W+++ +GY + ++
Sbjct: 263 HNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDM 322
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
+ LF EMP D VSWN++I G+ ++GE E A F+ +P+R +SWN MISGY G
Sbjct: 323 KESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNG 382
Query: 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
++++F +M VGE PD T S+L ACA + L +G ++H L S V
Sbjct: 383 NYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQ--LVEKSFVPDTAIS 440
Query: 308 NALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
NALI MY++CG++ A +F M +D+ +W+ LIG HG A +++ +F+EM+R KV
Sbjct: 441 NALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKV 500
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY-------GVHGDVE--- 416
PT ITFV +L AC +AG V EG+ F M EY I I HY G HG ++
Sbjct: 501 MPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDAL 560
Query: 417 -----------------------------LGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
L ++A K L + D S YVL+ N++A G
Sbjct: 561 EVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHEG 620
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+W VR+ M+ I KQPG S I+ + K
Sbjct: 621 KWGSAAVVREEMERQGIYKQPGYSWIDLEGK 651
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 14/260 (5%)
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQ 215
L A LFD + DVV W++L YARRG + AR LFDEMP R+ SWN M+TG+
Sbjct: 117 LAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAA 176
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML-SL 274
G++ KA ++F+ +P +D S + M+SG+ GM +A E+ + SV + V +L
Sbjct: 177 GQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTL 236
Query: 275 LTACADLGDLEVGKKV---------HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
+ A G K++ +L V+ N+++ Y K G + A
Sbjct: 237 IVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARA 296
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+F M D+D+ +W+T+I G +ES +F EM P +++ ++ G+
Sbjct: 297 LFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMP----DPDTVSWNLIIQGFMQKGE 352
Query: 386 VEEGKKYFKLMRDEYNIEPN 405
E + +F M + I N
Sbjct: 353 AEHARGFFDRMPERGTISWN 372
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 148/307 (48%), Gaps = 29/307 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F ++ + D +NT+I G Q+ + ++ L+ +M P+ +++ ++
Sbjct: 289 GDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPD----PDTVSWNLII 344
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVR------NSLIYFHANCGDLNTASVLFDGD 166
+ + G H + GF F+R N++I + G+ ++ LF
Sbjct: 345 QG-----FMQKGEAEHAR----GF-FDRMPERGTISWNTMISGYEKNGNYISSVKLFSKM 394
Query: 167 AKM----DVVAWSSLTAGYARRGELSMA---RSLFDEMPVRDLVSWNVMITGYAKQGEME 219
++ D +SS+ A A L + L ++ V D N +IT Y++ G +
Sbjct: 395 LEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALN 454
Query: 220 KANELFNEV-PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
A +F ++ K+D+VSWNA+I Y G +AL++F+EMR P +T +SLL+AC
Sbjct: 455 DAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSAC 514
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVST 337
+ G + G+ V T++ VA++ H AL+++ + G ++ A+EV M D S
Sbjct: 515 VNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSV 574
Query: 338 WSTLIGG 344
W +G
Sbjct: 575 WGAFLGA 581
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 130/309 (42%), Gaps = 63/309 (20%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N+L+ +A G ++ A LFD + + +W+++ G+ G++ A +FD MP +D
Sbjct: 136 NTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSA 195
Query: 204 SWNVMITGYAKQGEMEKANE------------------------------------LFNE 227
S + M++G+ K G + +A E LF+
Sbjct: 196 SLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDM 255
Query: 228 VPK--------------RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD--VTM 271
+PK R+VVSWN+M+ Y+ G A +F EM PD V+
Sbjct: 256 IPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEM------PDKDLVSW 309
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
++++ D++ +K+ + D + N +I + + G E A F M
Sbjct: 310 NTMISGYTQASDMKESEKLFWEMPD-----PDTVSWNLIIQGFMQKGEAEHARGFFDRMP 364
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+R +W+T+I G +G S+ +F +M + P TF VL AC+ + G +
Sbjct: 365 ERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQ 424
Query: 392 YFKLMRDEY 400
+L+ +
Sbjct: 425 IHQLVEKSF 433
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 17/224 (7%)
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
A R G AR LFD +P R +V+WN ++ G A++ + A E F+ +P RD VSWN
Sbjct: 44 AALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAVSWNT 103
Query: 239 MISGYVLCGMNKQ---ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
+++ Y A +F+EM + D VT +LL A A G ++ +++ +
Sbjct: 104 LLAAYSASPHPDHLAAARRLFDEM----PQRDVVTWNTLLGAYARRGLMDEARRLFDEMP 159
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
+ N ++ + G + +A++VF M +D ++ ST++ G +G E+
Sbjct: 160 QRNAA-----SWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAE 214
Query: 356 AMFREMQRLKVRPTEI---TFVGVLVACSHAGKVEEGKKYFKLM 396
+ +RL V + + ++VA AG+ + K+ F ++
Sbjct: 215 ELL--TKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMI 256
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N + + G A LF+ +P R VV+WN++++G + A E F+ M V +
Sbjct: 40 NRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAM-PVRDA 98
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
T+L+ +A L +++ + V+ N L+ YA+ G ++ A
Sbjct: 99 VSWNTLLAAYSASPHPDHLAAARRLFDEMPQ-----RDVVTWNTLLGAYARRGLMDEARR 153
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+F M R+ ++W+T++ G G +++ +F M
Sbjct: 154 LFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAM 189
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/512 (28%), Positives = 238/512 (46%), Gaps = 72/512 (14%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
NR L +C +R L++I A +G + + ++ I+ S G A ++F
Sbjct: 19 NRSVCHHLLTQCKTIRELQRIHAQALTHGLHPNQQSISCKIFR-SYAEFGRPADAGRLFD 77
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
+I PD + +++ + + A+ +++ +P+ F L A L + +
Sbjct: 78 EIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRI 137
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
G VHG I + G + V N+L+ + CG A
Sbjct: 138 GSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPA------------------------ 173
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
R++FD M V+D V+W M+ GY K ++ A F ++P + VSW A+I+G+
Sbjct: 174 -------RTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGH 226
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
V QALE+F +M G RP+ +T++ +L+ACAD+G L++G+ +H ++
Sbjct: 227 VQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIH-GYGSKSNATTN 285
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
++ NAL+DMYAK GSI A VF ++ +D TW+T+I G +++ +F +M R
Sbjct: 286 IIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLR 345
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
+ P +TFV VL ACSHAG ++EG++ F MR+ Y+I+P + HYG
Sbjct: 346 SGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLE 405
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
HG+ L +A ++ + G YVLL N+YA
Sbjct: 406 EAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGMEIIKREPGDDGVYVLLWNMYA 465
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
W +RK M I K+PGCS IE D
Sbjct: 466 LSNRWKEALDMRKQMLSRKIYKKPGCSWIEVD 497
>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 531
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 197/374 (52%), Gaps = 48/374 (12%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
NSL+ HA + A LF V+W+++ Y G+ + AR +FDEMP RD
Sbjct: 152 NSLLCAHARLASVPAAESLFTSMPSRTQVSWNAMVVVYVNAGDFASARLVFDEMPTRDSS 211
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SW+V+I GY K+G M+ A ELF+++P +++V+W AMI+GY CG K+++ +F E+ +VG
Sbjct: 212 SWSVLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKESISLFRELEAVG 271
Query: 264 ERPDDVTMLSLLTACADLGDLE----VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
PD TM+ ++++ + +G VG V ++ KVL AL+DM+AKCG+
Sbjct: 272 IEPDAATMVGVISSASQIGSTALAGWVGNYVDRKRIERNE---KVL--TALVDMHAKCGN 326
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
+E+A+ F + D ++ LI GLA HG + ++ +F M+ VRP ITFVGVL A
Sbjct: 327 VEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFERMRAQAVRPDPITFVGVLTA 386
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSHAG V+ G Y++ M +Y ++ HY
Sbjct: 387 CSHAGLVDMGLDYWEAMVQDYGMDRRADHYACVVDMLGRAGRIVEAFDMVQTMPMGPHPG 446
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
H +VE+ + +L + +G+Y+LLSNIYA + +W E++R LM
Sbjct: 447 ALGALLSACKTHDNVEIAEIVANKLFELEPRNTGNYILLSNIYAGKEQWEEAERIRSLMR 506
Query: 461 DSDIKKQPGCSLIE 474
KQPG + +E
Sbjct: 507 TKLPFKQPGSTWVE 520
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 120/265 (45%), Gaps = 34/265 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++ A ++F K+ + + +I G AQ P +++ L+ ++E I+P+ T V+
Sbjct: 224 GSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKESISLFRELEAVGIEPDAATMVGVI 283
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+ +++ + V + + E N V +L+ HA CG++ A F + D
Sbjct: 284 SSASQIGSTALAGWVGNYVDRKRIERNEKVLTALVDMHAKCGNVEQALNCFREIEQPDAY 343
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+++L +G A G ++A +F+ M + D +++ ++T + G ++ +
Sbjct: 344 PYTALISGLATHGHSTLALQVFERMRAQAVRPDPITFVGVLTACSHAGLVDMGLDY---- 399
Query: 229 PKRDVVSWNAMISGYVLCGMNKQA----------------LEMFEEMRSVGERPDDVTML 272
W AM+ Y GM+++A +E F+ ++++ P +
Sbjct: 400 -------WEAMVQDY---GMDRRADHYACVVDMLGRAGRIVEAFDMVQTMPMGPHPGALG 449
Query: 273 SLLTACADLGDLEVGKKVHCTLLDM 297
+LL+AC ++E+ + V L ++
Sbjct: 450 ALLSACKTHDNVEIAEIVANKLFEL 474
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 10/188 (5%)
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
+P R V+ N ++ YAK + A+ +P D VS+N+++ + A +F
Sbjct: 113 VPARLPVA-NALVDLYAKCDALPAAHAALASIPAPDAVSFNSLLCAHARLASVPAAESLF 171
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
M S + V+ +++ + GD + V + S V LI Y K
Sbjct: 172 TSMPSRTQ----VSWNAMVVVYVNAGDFASARLVFDEMPTRDSSSWSV-----LIVGYCK 222
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
GS++ A E+F M +++ TW+ +I G A G +ESI++FRE++ + + P T VGV
Sbjct: 223 RGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKESISLFRELEAVGIEPDAATMVGV 282
Query: 377 LVACSHAG 384
+ + S G
Sbjct: 283 ISSASQIG 290
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 6/156 (3%)
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD ++ L A A LG G +H + A++ NAL+D+YAKC ++ A
Sbjct: 79 PDHFSLPFALNAAASLGLFRFGASLHALAFRLALVPARLPVANALVDLYAKCDALPAAHA 138
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+ D ++++L+ A + ++F M T++++ ++V +AG
Sbjct: 139 ALASIPAPDAVSFNSLLCAHARLASVPAAESLFTSMPSR----TQVSWNAMVVVYVNAGD 194
Query: 386 VEEGKKYFKLM--RDEYNIEPNIRHYGVHGDVELGR 419
+ F M RD + I Y G ++ R
Sbjct: 195 FASARLVFDEMPTRDSSSWSVLIVGYCKRGSMQSAR 230
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 151/535 (28%), Positives = 257/535 (48%), Gaps = 81/535 (15%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
L L+ + A V GF SD + ++ G + A +F + D +N+++
Sbjct: 162 LVHLQCLHACVIQYGFGSDVALANSML--NVYCKCGRVEDAQALFELMDARDVISWNSLV 219
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
G AQ N + + L +M+ I+P++ TF ++ A +G VHG I++ G E
Sbjct: 220 SGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLE 279
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ + SLI + CG++N+A +F+G DV++W+++ +G + MA ++F M
Sbjct: 280 QDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRM 339
Query: 198 -------------------------PV--------------RDLVSWNVMITGYAKQGEM 218
P+ D+ S N ++T YAK G +
Sbjct: 340 LKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHL 399
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
E++ +F+ + +RD+VSWNA++SG+ G +AL +F EMR +RPD +T++SLL AC
Sbjct: 400 EQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQAC 459
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
A +G L GK +H + G +L AL+DMY+KCG + A + F M +D+ +W
Sbjct: 460 ASIGALHQGKWIHNFVTKSCLGPC-ILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSW 518
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
S++I G HG E ++ M+ + ++P + ++ +L ACSH G V++G +F M
Sbjct: 519 SSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTK 578
Query: 399 EYNIEPNIRH-----------------YGVH----------------------GDVELGR 419
++ IEP + H Y + G+VELG
Sbjct: 579 DFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGD 638
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ + ++ ++ +G+YV L++ YAS W+ V +V M +KK PG S IE
Sbjct: 639 IVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIE 693
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 172/359 (47%), Gaps = 39/359 (10%)
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P T YN II + + D + Y+ M P+ TF ++KACT L + G
Sbjct: 11 PATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSF 70
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H +++ G+ + ++ SLI F++ G +A +FD +VV W+++ Y R GE
Sbjct: 71 HQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEH 130
Query: 188 SMARSLFDEMPVR------------------------------------DLVSWNVMITG 211
+A S+++ M + D+ N M+
Sbjct: 131 DVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNV 190
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
Y K G +E A LF + RDV+SWN+++SGY G ++ L++ M++ G PD T
Sbjct: 191 YCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTF 250
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGM 330
SL++A A L VGK VH +L +G+ + H +LI MY KCG++ A +F GM
Sbjct: 251 GSLVSAAAMQSKLGVGKMVHGHIL--RAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+DV +W+ +I GL + A+ ++ +FR M + +V P+ T VL AC+ G G
Sbjct: 309 MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLG 367
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/399 (32%), Positives = 214/399 (53%), Gaps = 34/399 (8%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L KKC+N + LKQ+ + G D +R+LI G + YA +F ++ PD
Sbjct: 30 LLKKCSNFKQLKQVHGKIIRYGLTYDQLLVRKLIQLSPSY--GKMKYATLVFDQLNAPDV 87
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
F +N +IR +P A L+ M P+KFT+ V+ AC ++G H
Sbjct: 88 FTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMAYNALDVGRVAHAL 147
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+K GF + +V+N+++ + C +++ +FD +V AW+++ AG+ G+L A
Sbjct: 148 AIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFDKMCVRNVFAWTTVIAGFVACGKLDTA 207
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R LF++MP +++VSW +I GY K K+ +
Sbjct: 208 RELFEQMPSKNVVSWTAIIDGYVKH--------------KQPI----------------- 236
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+A ++FE M++ RP++ T++SL+ AC ++G L++G++VH L + L G AL
Sbjct: 237 EAFDLFERMQADNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFL-GTAL 295
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMY+KCG+++ A VF M+ R ++TW+T+I L HG+ +E++++F EM++ P
Sbjct: 296 IDMYSKCGNLDDARTVFDMMQMRTLATWNTMITSLGVHGYRDEALSIFEEMEKANEVPDA 355
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
ITFVGVL AC + +E +KYF LM D Y I P + HY
Sbjct: 356 ITFVGVLSACVYMNDLELAQKYFNLMTDHYGITPILEHY 394
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/450 (34%), Positives = 232/450 (51%), Gaps = 81/450 (18%)
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN---MGFCVHG 129
+ T I +S + + A + QM + +I+PN TF +L AC R+ G +H
Sbjct: 59 WTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAIHA 118
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+ K G + N DV+ ++L YA+ G +
Sbjct: 119 HVRKLGLDIN------------------------------DVMVGTALIDMYAKCGRVES 148
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
AR FD+M VR+LVSWN MI GY + G+ E A ++F+ +P ++ +SW A+I G+V +
Sbjct: 149 ARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYH 208
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL--DMTSGVAKVLHG 307
++ALE F EM+ G PD VT+++++ ACA+LG L +G VH ++ D + V KV
Sbjct: 209 EEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNV-KV--S 265
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
N+LIDMY++CG I+ A +VF M R + +W+++I G A +G A+E+++ F MQ +
Sbjct: 266 NSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFK 325
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV--ELGRLANKRL 425
P +++ G L+ACSHAG + EG + F+ M+ I P I HYG D+ GRL +
Sbjct: 326 PDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRL--EEA 383
Query: 426 LNMRK-------------------------------------DESGD--YVLLSNIYASR 446
LN+ K D GD YVLLSNIYA+
Sbjct: 384 LNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMNYLIELDSGGDSNYVLLSNIYAAV 443
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G+W+ KVR+ M + I+K+PG S IE D
Sbjct: 444 GKWDGANKVRRRMKERGIQKKPGFSSIEID 473
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 34/191 (17%)
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL---GDLEVGKK 289
+VSW I+ Y G +A F +MR P+ +T ++LL+ACA + G
Sbjct: 56 IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER--------------------------- 322
+H + + + V+ G ALIDMYAKCG +E
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175
Query: 323 ----AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
A++VF G+ ++ +W+ LIGG + EE++ FREMQ V P +T + V+
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235
Query: 379 ACSHAGKVEEG 389
AC++ G + G
Sbjct: 236 ACANLGTLGLG 246
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 137/296 (46%), Gaps = 22/296 (7%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G A ++F + + + +I G + +A+ + +M+ + P+ T V+
Sbjct: 175 GKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVI 234
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L +G VH ++ F N V NSLI ++ CG ++ A +FD + +V
Sbjct: 235 AACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLV 294
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+S+ G+A G A S F+ M D VS+ + + G + + +F +
Sbjct: 295 SWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHM 354
Query: 229 PK-RDVVS----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+ R ++ + ++ Y G ++AL + + M +P++V + SLL AC G+
Sbjct: 355 KRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPM---KPNEVILGSLLAACRTQGN 411
Query: 284 LEVGKKVHCTLLDMTSGVAKVLHGNA----LIDMYAKCGSIERAIEVFLGMRDRDV 335
+ + + V L+++ SG G++ L ++YA G + A +V M++R +
Sbjct: 412 IGLAENVMNYLIELDSG------GDSNYVLLSNIYAAVGKWDGANKVRRRMKERGI 461
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 151/430 (35%), Positives = 226/430 (52%), Gaps = 72/430 (16%)
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147
+A +++M+ ++PN TF +L ACT F + G +++G + +VR
Sbjct: 72 EAAAEFSRMQIAGVRPNHITFLTLLSACT-------DFPLEG--LRFGGSIHAYVRKL-- 120
Query: 148 YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV 207
L+T +V+ G A +D+ Y++ G+L +A +FDEM VR+ VSWN
Sbjct: 121 -------GLDTENVMV-GTALVDM---------YSKCGQLDLAWLMFDEMHVRNSVSWNT 163
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
MI G + GE+ +A LF+++ +RD +SW +MI G+V G +QALE F EM+ G PD
Sbjct: 164 MIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPD 223
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
VT++S+L ACA+LG L +G ++ ++ D + K+ N+LIDMY++CG I A +
Sbjct: 224 YVTIISVLAACANLGALGLGLWINRFVMKQDFKDNI-KI--SNSLIDMYSRCGCIRLARQ 280
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VF M R + +W+++I G A +G AEE++ F M++ RP ++F G L ACSH+G
Sbjct: 281 VFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGL 340
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYG----------------------------------- 410
V+EG ++F +M+ I P I HYG
Sbjct: 341 VDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLL 400
Query: 411 ----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
HGDV L K L + +YVLLSNIYA+ G W+ KVRK M I K
Sbjct: 401 AACRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHK 460
Query: 467 QPGCSLIEAD 476
+PG S IE D
Sbjct: 461 KPGFSSIEMD 470
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 33/194 (17%)
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD--LGDLEV 286
P +VSW + I+ + G +A F M+ G RP+ +T L+LL+AC D L L
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE------------------------- 321
G +H + + V+ G AL+DMY+KCG ++
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169
Query: 322 ------RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
AI +F M +RD +W+++IGG G E+++ FREMQ V P +T +
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229
Query: 376 VLVACSHAGKVEEG 389
VL AC++ G + G
Sbjct: 230 VLAACANLGALGLG 243
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 122/257 (47%), Gaps = 12/257 (4%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F +++E D + ++I G + A+ + +M+ ++P+ T VL
Sbjct: 172 GEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVL 231
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L +G ++ ++K F+ N + NSLI ++ CG + A +F+ K +V
Sbjct: 232 AACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLV 291
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+S+ G+A G A F+ M D VS+ +T + G +++ + F+ +
Sbjct: 292 SWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIM 351
Query: 229 PKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
+ +S + ++ Y G + AL + M +P++V + SLL AC GD
Sbjct: 352 KRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPM---KPNEVVLGSLLAACRTHGD 408
Query: 284 LEVGKKVHCTLLDMTSG 300
+ + +++ L ++ G
Sbjct: 409 VGLAERLMKYLCEVDPG 425
>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 579
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 165/528 (31%), Positives = 249/528 (47%), Gaps = 107/528 (20%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL----DAVFLYTQMEKCSIKPNKFTF 108
G ++ A K+F ++ D +N+++ SA QN L A+F + N ++
Sbjct: 43 GKVDAARKLFDEMATKDVVTWNSML--SAYWQNGLLQRSKALFHSMPLR------NVVSW 94
Query: 109 SFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168
+ ++ AC + F + + E N N++I A CG + A LF+
Sbjct: 95 NSIIAACVQNDNLQDAF----RYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMPC 150
Query: 169 MDVVAWSSLTAGYAR-RGELSMARSLFDEMPVRDLVSWNVMI------------------ 209
+VV+++++ GYAR G + AR+LF+ MP R+ VSW VMI
Sbjct: 151 PNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWEVFVR 210
Query: 210 -------------TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
TG+ K+G ME A +LF E+ RD+VSWN +++GY G ++AL +F
Sbjct: 211 MPQKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLF 270
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG--------N 308
+M G +PDD+T +S+ ACA L LE G K H L+ HG N
Sbjct: 271 SQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIK---------HGFDSDLSVCN 321
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
ALI +++KCG I + VF + D+ +W+T+I A HG +++ + F +M + V+P
Sbjct: 322 ALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQP 381
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
ITF+ +L AC AGKV E F LM D Y I P HY
Sbjct: 382 DGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKI 441
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
VH +VELG LA +R+LN+ SG YV+LSNIYA+ G+W
Sbjct: 442 INEMPFKADSSIWGAVLAACSVHLNVELGELAARRILNLDPFNSGAYVMLSNIYAAAGKW 501
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPK-PNSGNL 496
V ++R LM + +KKQ S ++ +K Y P PN ++
Sbjct: 502 KDVHRIRVLMKEQGVKKQTAYSWLQIGNKT--HYFVGGDPSHPNINDI 547
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 141/284 (49%), Gaps = 41/284 (14%)
Query: 149 FHAN--------CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
+HAN G ++ A LFD A DVV W+S+ + Y + G L +++LF MP+R
Sbjct: 30 YHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMPLR 89
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM- 259
++VSWN +I + ++ A P+++ S+NA+ISG CG K A +FE M
Sbjct: 90 NVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMP 149
Query: 260 ------------------------RSVGE---RPDDVTMLSLLTACADLGDLEVGKKVHC 292
R++ E R + V+ + ++ + G E +V
Sbjct: 150 CPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWEVFV 209
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ + VA+ A+I + K G +E A ++F +R RD+ +W+ ++ G A +G E
Sbjct: 210 R-MPQKNDVAR----TAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGE 264
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
E++ +F +M R ++P ++TFV V +AC+ +EEG K L+
Sbjct: 265 EALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALL 308
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 39/227 (17%)
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
RD+ N+ I ++ G+++ A +LF+E+ +DVV+WN+M+S Y G+ +++ +F M
Sbjct: 27 RDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSM 86
Query: 260 --RSVGERPDDVTMLSLLTACADLGDLE--------VGKKVHCTLLDMTSGVAK------ 303
R+V V+ S++ AC +L+ +K + + SG+A+
Sbjct: 87 PLRNV------VSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKD 140
Query: 304 ------------VLHGNALIDMYAKC-GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
V+ A++D YA+ G I RA +F M R+ +W +I GL +G
Sbjct: 141 AQRLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGL 200
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
EE+ +F M + ++ ++ G++E+ + F+ +R
Sbjct: 201 CEEAWEVFVRMP----QKNDVARTAMITGFCKEGRMEDARDLFQEIR 243
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
L + S V H N I ++ G ++ A ++F M +DV TW++++ +G +
Sbjct: 18 VLATLFSSTRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQ 77
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
S A+F M V +++ ++ AC +++ +Y
Sbjct: 78 RSKALFHSMPLRNV----VSWNSIIAACVQNDNLQDAFRYL 114
>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Cucumis sativus]
Length = 712
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/538 (26%), Positives = 254/538 (47%), Gaps = 93/538 (17%)
Query: 30 INGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQ 84
++GF S + L ++ GS ++ G I + K+F ++ + + +I G ++
Sbjct: 138 LHGF-SVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAG 196
Query: 85 NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRN 144
+ ++ M + ++ + + ++ LKA N G +H + +K GF+ N FV N
Sbjct: 197 YSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVAN 256
Query: 145 SLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV- 203
SL + CG L+ F +DVV+W+++ Y + G+ F M +++
Sbjct: 257 SLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIP 316
Query: 204 ------------------SW--------------------NVMITGYAKQGEMEKANELF 225
W N ++T Y+K GE+ +++F
Sbjct: 317 NEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVF 376
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+ RD+++W+ +I+ Y G ++A E MRS G +P++ + S+L+ C + LE
Sbjct: 377 CSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILE 436
Query: 286 VGKKVHCTLL----DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
GK++H +L + TS V +ALI MYAKCGSI A ++F+ D+ +W+ +
Sbjct: 437 QGKQLHAHVLSVGLEQTSMVC-----SALIIMYAKCGSIAEASKIFMDSWKDDIISWTAM 491
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I G A HG ++E+I +F +Q++ +RP +TF+GVL ACSHAG V+ G YF M +Y+
Sbjct: 492 ISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYH 551
Query: 402 IEPNIRHYG---------------------------------------VHGDVELGRLAN 422
I P+ HYG +HGDV+ G+ A
Sbjct: 552 ITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAA 611
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
+L + + +G ++ L+NI+A++G+W +R LM + K+PG S ++ D F
Sbjct: 612 AEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVF 669
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 170/379 (44%), Gaps = 51/379 (13%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFTFSFVLKACT 116
A +F ++ + D + II G S + +A+ L+++M + ++ + F S LK C
Sbjct: 68 ARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCG 127
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
L G +HG VK G + FV ++L+ + G++ + +FD + V W++
Sbjct: 128 LGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTA 187
Query: 177 LTAGYAR-----------------------------------RGELSMARSL-------- 193
+ G R G L+ RS+
Sbjct: 188 VITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKG 247
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FDE V+ N + T Y K G+++ F ++ DVVSW +++ Y+ G L
Sbjct: 248 FDE---NSFVA-NSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGL 303
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALID 312
+ F+ MR+ P++ T ++++ CA+ L+ G+++H +L + G L N+++
Sbjct: 304 QAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCV--GFVNALSVANSIMT 361
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
+Y+KCG + +VF M+ RD+ TWST+I + G+ EE+ M+ +P E
Sbjct: 362 LYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFA 421
Query: 373 FVGVLVACSHAGKVEEGKK 391
VL C +E+GK+
Sbjct: 422 LASVLSVCGSMAILEQGKQ 440
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 98/191 (51%), Gaps = 2/191 (1%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
DL N + K ++ A +LF+++P+RD VSW +ISGYV + +AL +F +MR
Sbjct: 48 DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107
Query: 261 SVGERPDDVTMLSLLTACADLG-DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
E D +LSL LG + G +H + T V V G+AL+DMY K G
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVK-TGLVNSVFVGSALLDMYMKIGE 166
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I R+ +VF M R+ TW+ +I GL G++E +A F M R KV + L A
Sbjct: 167 IGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKA 226
Query: 380 CSHAGKVEEGK 390
+ +G + G+
Sbjct: 227 SADSGALNHGR 237
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 154/355 (43%), Gaps = 26/355 (7%)
Query: 4 NRHRSSRLWKKCTNLRTLK---QIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYA 58
N + S + C N LK Q+ A V GF + S + +YS G +
Sbjct: 317 NEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKC----GELASV 372
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
K+F + D ++TII +Q +A ++M KPN+F + VL C +
Sbjct: 373 SKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSM 432
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
G +H ++ G E V ++LI +A CG + AS +F K D+++W+++
Sbjct: 433 AILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMI 492
Query: 179 AGYARRGELSMARSLFDEMPV----RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+GYA G A LF+ + D V++ ++T + G ++ FN + K +
Sbjct: 493 SGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHI 552
Query: 235 S-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
+ + MI G A + +RS+ + DDV +LL AC GD++ G++
Sbjct: 553 TPSKEHYGCMIDLLCRAGRLHDAETL---IRSMPIQWDDVVWSTLLRACRIHGDVDCGQR 609
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV---STWSTL 341
+L + A L +++A G + A + + M+ + V WS++
Sbjct: 610 AAAEVLKLDPNCAGT--HITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSV 662
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 166/554 (29%), Positives = 253/554 (45%), Gaps = 87/554 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
K C + +I L GF D LI+ S A+ A +F ++ D
Sbjct: 161 KACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRY--KAVGNARILFDEMPVRDMGS 218
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I G QS N +A+ L + + T +L ACT N G +H +
Sbjct: 219 WNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSI 274
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K+G E FV N LI +A G L +FD D+++W+S+ Y + A S
Sbjct: 275 KHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIS 334
Query: 193 LFDEMPV----------------------------------------RDLVSWNVMITGY 212
LF EM + D+ N ++ Y
Sbjct: 335 LFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMY 394
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTM 271
AK G ++ A +FN +P DV+SWN +ISGY G +A+EM+ M GE + T
Sbjct: 395 AKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTW 454
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
+S+L AC+ G L G K+H LL V +L DMY KCG +E A+ +F +
Sbjct: 455 VSVLPACSQAGALRQGMKLHGRLLK-NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP 513
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+ W+TLI FHG E+++ +F+EM V+P ITFV +L ACSH+G V+EG+
Sbjct: 514 RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQW 573
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
F++M+ +Y I P+++HYG VH
Sbjct: 574 CFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVH 633
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
G+V+LG++A++ L + + G +VLLSN+YAS G+W V+++R + ++K PG S
Sbjct: 634 GNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSS 693
Query: 473 IEADDKAFLQYLFN 486
+E D+K + Y N
Sbjct: 694 MEVDNKVEVFYTGN 707
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 207/422 (49%), Gaps = 50/422 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV----IPGAINYAHKMFVKIT 66
L++ CTNL++ K + A + + S ++ + S +V G + A F I
Sbjct: 60 LFRYCTNLQSAKCLHARLVV------SKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQ 113
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQ-MEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
D + +N +I G ++ N + + ++ M + P+ TF VLKAC ++ N
Sbjct: 114 NRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK-- 171
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H +K+GF ++ +V SLI+ ++ + A +LFD D+ +W+++ +GY + G
Sbjct: 172 -IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSG 230
Query: 186 ELSMARSL------FDEMPVRDLVSW-----------------------------NVMIT 210
A +L D + V L+S N +I
Sbjct: 231 NAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLID 290
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
YA+ G + ++F+ + RD++SWN++I Y L +A+ +F+EMR +PD +T
Sbjct: 291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLT 350
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
++SL + + LGD+ + V L + + GNA++ MYAK G ++ A VF +
Sbjct: 351 LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEG 389
+ DV +W+T+I G A +GFA E+I M+ M+ ++ + T+V VL ACS AG + +G
Sbjct: 411 PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG 470
Query: 390 KK 391
K
Sbjct: 471 MK 472
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 235/469 (50%), Gaps = 75/469 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G ++ A F ++ E D +N++I G Q L A+ ++++M + S + P++FT + V
Sbjct: 226 GQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASV 285
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L AC L +G +H IV GF+ + V N+LI ++ CG + TA
Sbjct: 286 LSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA------------ 333
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLV--SWNVMITGYAKQGEMEKANELFNEVP 229
R L ++ +DL + ++ GY K G+M +A +F+ +
Sbjct: 334 -------------------RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLK 374
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
RDVV+W AMI GY G+ +A+ +F M +RP+ T+ ++L+ + L L GK+
Sbjct: 375 DRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQ 434
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFH 348
+H + + + + V NALI MYAK GSI A F +R +RD +W+++I LA H
Sbjct: 435 IHGSAVK-SGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQH 493
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH 408
G AEE++ +F M +RP IT+VGV AC+HAG V +G++YF +M+D I P + H
Sbjct: 494 GHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSH 553
Query: 409 YG---------------------------------------VHGDVELGRLANKRLLNMR 429
Y V+ +++LG++A +RLL +
Sbjct: 554 YACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLE 613
Query: 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ SG Y L+N+Y++ G+W K+RK M D +KK+ G S IE K
Sbjct: 614 PENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHK 662
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 178/375 (47%), Gaps = 70/375 (18%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ + + F ++ + D+ + T+I G A+ + +M + I+P++FT + VL
Sbjct: 94 GDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVL 153
Query: 113 K--ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
A TR L G VH IVK G N V NSL+ +A CGD A V+FD D
Sbjct: 154 ASVAATRCL--ETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKD 211
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
+ +W+++ A + + G++ +A + F++M RD+V+WN MI+GY ++
Sbjct: 212 ISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQR--------------- 256
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKK 289
G + +AL+MF +M R PD T+ S+L+ACA+L L +G++
Sbjct: 257 ----------------GYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQ 300
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE---RAIE--------------------- 325
+H ++ ++ ++ NALI MY++CG +E R IE
Sbjct: 301 IHSHIVTTGFDISGIVL-NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK 359
Query: 326 ---------VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
+F ++DRDV W+ +I G HG E+I +FR M + RP T +
Sbjct: 360 LGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAM 419
Query: 377 LVACSHAGKVEEGKK 391
L S + GK+
Sbjct: 420 LSVASSLASLGHGKQ 434
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 186/412 (45%), Gaps = 87/412 (21%)
Query: 103 PNKFTFSFVLKACTRLLYRNM--------GFCVHGKIVKYGFEFNRFVRNSLIYFHANCG 154
P + S +L+ CT LL +++ VH +++K G F+ ++ N+L
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNL-------- 55
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK 214
M+V Y++ G AR LFDEMP+R SWN +++ YAK
Sbjct: 56 --------------MNV---------YSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAK 92
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
+G+M+ + E F+ +P+RD VSW MI GY G +A+ + EM G P T+ ++
Sbjct: 93 RGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNV 152
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKC---------------- 317
L + A LE GKKVH ++ + G+ V N+L++MYAKC
Sbjct: 153 LASVAATRCLETGKKVHSFIVKL--GLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVK 210
Query: 318 ---------------GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
G ++ A+ F M +RD+ TW+++I G G+ ++ MF +M
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKML 270
Query: 363 R-LKVRPTEITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIE-----PNIRHYGVHGDV 415
R + P T VL AC++ K+ G++ + ++ ++I I Y G V
Sbjct: 271 RDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGV 330
Query: 416 ELGRLANKRLLNMR--KD-ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
E R RL+ R KD + + L + Y G+ N + + + D D+
Sbjct: 331 ETAR----RLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDV 378
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 251/523 (47%), Gaps = 90/523 (17%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
+ + K +L LKQ+Q+ +T G + +LI S+ + ++YAH++F I P
Sbjct: 10 TTILTKINHLNQLKQLQSHLTTLGHSQTHFYAFKLIRFCSLNLSN-LHYAHQIFNHIHSP 68
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ +++ II + Q+ L+ M +I+PN F + VLK+ ++ VH
Sbjct: 69 NIYLFTAIITAFSSQQHT--TFKLFKTMLNSNIRPNNFIYPHVLKSVKERFLVDL---VH 123
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR-RGEL 187
+IVK CG LN V +SL Y++ G L
Sbjct: 124 AQIVK-------------------CGFLNYP------------VVETSLVDSYSKVLGGL 152
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247
A +FDEM R++V + V+++GY + G++EK +F+E+ RDV +WNA+ISG G
Sbjct: 153 RDAHKVFDEMSERNIVVFTVLVSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNG 212
Query: 248 MNKQALEMFEEMRSV----------GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
+ + +F EM G +P+ VT++ +L+AC G L++GK +H +
Sbjct: 213 FFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYRH 272
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
V + NAL+DMY KCGS+E A +VF + + +++W+++I A HG E++I
Sbjct: 273 GFVVDSFV-SNALVDMYGKCGSLELARKVFEMDQRKGLTSWNSMINCYALHGKCEDAITF 331
Query: 358 FREMQRL--KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
F +M VRP E+TF+G+L AC+H G VE+G YF++M EY IEP I HYG
Sbjct: 332 FEKMVECGGGVRPDEVTFIGLLNACTHGGLVEQGCGYFEMMIKEYGIEPQIAHYGCLIDL 391
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
VHG +L A K+L+ + G
Sbjct: 392 LGRAGQFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLVEIDPHNGGYG 451
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
+L+NIY G+W+ + V + K PGCS IE DDK
Sbjct: 452 TMLANIYGQLGKWDEMRNVWSKLKQQKSYKIPGCSWIEVDDKV 494
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 150/535 (28%), Positives = 255/535 (47%), Gaps = 81/535 (15%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
L L+ + A V GF SD + ++ G + A +F + D +N+++
Sbjct: 162 LVHLQCLHACVIQYGFGSDVALANSML--NVYCKCGRVEDAQALFELMDARDVISWNSLV 219
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
G AQ N + + L +M+ I+P++ TF ++ A +G VHG I++ G E
Sbjct: 220 SGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLE 279
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ + SLI + CG++N+A +F+G DV++W+++ +G + MA ++F M
Sbjct: 280 QDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRM 339
Query: 198 -------------------------PV--------------RDLVSWNVMITGYAKQGEM 218
P+ D+ S N ++T YAK G +
Sbjct: 340 LKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHL 399
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
E++ +F+ + +RD+VSWNA++SG+ G +AL +F EMR +RPD +T++SLL AC
Sbjct: 400 EQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQAC 459
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
A +G L GK +H + G +L AL+DMY+KCG + A + F M +D+ +W
Sbjct: 460 ASIGALHQGKWIHNFVTKSCLGPC-ILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSW 518
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
S++I G HG E ++ M+ + ++P + ++ +L ACSH G V++G +F M
Sbjct: 519 SSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTK 578
Query: 399 EYNIEPNIRHYG---------------------------------------VHGDVELGR 419
++ IEP + H G+VELG
Sbjct: 579 DFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGD 638
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ + ++ ++ +G+YV L++ YAS W+ V +V M +KK PG S IE
Sbjct: 639 IVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIE 693
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 172/359 (47%), Gaps = 39/359 (10%)
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P T YN II + + D + Y+ M P+ TF ++KACT L + G
Sbjct: 11 PATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSF 70
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H +++ G+ + ++ SLI F++ G +A +FD +VV W+++ Y R GE
Sbjct: 71 HQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEH 130
Query: 188 SMARSLFDEMPVR------------------------------------DLVSWNVMITG 211
+A S+++ M + D+ N M+
Sbjct: 131 DVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNV 190
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
Y K G +E A LF + RDV+SWN+++SGY G ++ L++ M++ G PD T
Sbjct: 191 YCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTF 250
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGM 330
SL++A A L VGK VH +L +G+ + H +LI MY KCG++ A +F GM
Sbjct: 251 GSLVSAAAMQSKLGVGKMVHGHIL--RAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+DV +W+ +I GL + A+ ++ +FR M + +V P+ T VL AC+ G G
Sbjct: 309 MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLG 367
>gi|255566233|ref|XP_002524104.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
gi|223536672|gb|EEF38314.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
Length = 810
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 196/330 (59%), Gaps = 32/330 (9%)
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
+G + S++P + Y Q ++ I P+ T+ F++KACT+L +MG HG +V++GF
Sbjct: 511 FKGYSGSESPGQSFHFYIQSQRLGIFPDNLTYPFLVKACTQLGSIDMGMQAHGHVVRHGF 570
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E + +V+NSL+ ++N GD + A +F
Sbjct: 571 ENDVYVQNSLVNMYSNLGD-------------------------------IRAASYIFQT 599
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
M D+VSW MI GY K G++E A +LF+++P++++V+W+ MISGY +A+E++
Sbjct: 600 MSQLDVVSWTSMIAGYNKSGDVESARKLFDKMPEKNLVTWSTMISGYAKNNCFNKAIELY 659
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
++S G + ++ M+S++++CA LG LE+G+K H ++ V +L G AL+DMYA+
Sbjct: 660 NVLQSEGVQANETVMVSVISSCAHLGALELGEKAHDYVVRNKITVNLIL-GTALVDMYAR 718
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
CGSI++A++VF + ++D +W+ LI G A HG AE+++ F EM R + P +ITF V
Sbjct: 719 CGSIDKAVQVFDELGEKDALSWTALIAGFAMHGHAEKALQYFSEMIRTGLTPRDITFTAV 778
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
L ACSH G VE G K F+ M+ +Y +EP +
Sbjct: 779 LSACSHRGLVERGMKIFETMKRDYCVEPRL 808
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 92/184 (50%), Gaps = 5/184 (2%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A K+F K+ E + ++T+I G A++ A+ LY ++ ++ N+ V+
Sbjct: 619 GDVESARKLFDKMPEKNLVTWSTMISGYAKNNCFNKAIELYNVLQSEGVQANETVMVSVI 678
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+C L +G H +V+ N + +L+ +A CG ++ A +FD + D +
Sbjct: 679 SSCAHLGALELGEKAHDYVVRNKITVNLILGTALVDMYARCGSIDKAVQVFDELGEKDAL 738
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV 228
+W++L AG+A G A F EM L +++ +++ + +G +E+ ++F E
Sbjct: 739 SWTALIAGFAMHGHAEKALQYFSEMIRTGLTPRDITFTAVLSACSHRGLVERGMKIF-ET 797
Query: 229 PKRD 232
KRD
Sbjct: 798 MKRD 801
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/384 (34%), Positives = 203/384 (52%), Gaps = 43/384 (11%)
Query: 154 GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYA 213
G ++ A+ F D S + YA G++ R+ F E+ D+V M+ +
Sbjct: 144 GSVHAAA--FQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALS 201
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
G+++ A ELF+ +P+RD V+WNAM++GYV G +++AL +F+EM+ G +VT++S
Sbjct: 202 AGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVS 261
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
+LTACA +G LE G VH + V+ L G AL+DMY+KCG + ++EVF MR+R
Sbjct: 262 VLTACAQMGALERGMWVHSYVCSRGMRVSVTL-GTALVDMYSKCGVVTMSMEVFETMRER 320
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
++ TW++ + GLA +G EE + +F+ M+ + P +TFV VL CS AG VEEG+ F
Sbjct: 321 NIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACF 380
Query: 394 KLMRDEYNIEPNIRHYG---------------------------------------VHGD 414
M+D++ +EP + HYG +H +
Sbjct: 381 DSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNN 440
Query: 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
V+LG+ A +L + +VLLSNIYA W V KVR +M +KK PGCS IE
Sbjct: 441 VDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIE 500
Query: 475 ADDKAFLQYLFNLKPKPNSGNLDT 498
D K ++ K P ++ T
Sbjct: 501 VDGKVH-EFFVGSKSHPRYKDIQT 523
>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
Length = 735
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 154/525 (29%), Positives = 252/525 (48%), Gaps = 81/525 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
G ++ A +MF + + ++F ++T++ G A + +A L+ M E+C + ++F + V
Sbjct: 167 GIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAV 226
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A + L MG +HG IVK G V NSL+ +A G + A +F+ + +
Sbjct: 227 LSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNS 286
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG-------------------- 211
+ WS++ GYA+ GE A S+F +M G
Sbjct: 287 ITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGL 346
Query: 212 -------------------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
YAK G + A E F+++ + D+V W AM+SG+V G +++A
Sbjct: 347 MVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEA 406
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
L ++ M G P T+ S L ACA + LE GK++H ++ G+ + G+AL
Sbjct: 407 LTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPV-GSALST 465
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+KCG++E + VF + DRDV W+++I G + +G ++ +F EM+ P IT
Sbjct: 466 MYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNIT 525
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------------- 411
F+ +L ACSH G V+ G +YF LM +Y + P + HY
Sbjct: 526 FINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 585
Query: 412 ---HG---------------DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
HG D ++G A +RL+ + +S Y+LLSNIYAS+ +WN VE
Sbjct: 586 TIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTRDSSAYILLSNIYASQRKWNDVE 645
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLDT 498
+VR LM + K PGCS +E + + + ++ + P + N++
Sbjct: 646 RVRHLMRLRGVNKDPGCSWVELNSRVHV-FVVGEQQHPEAENINA 689
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 143/324 (44%), Gaps = 58/324 (17%)
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD--LNTASVLFDG--DAKMDVVAWSSLTA 179
G +H +K G + V NSLI F+++ L A +FD A DV +W+SL
Sbjct: 31 GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLLN 90
Query: 180 GYARR---GELSMARSLFDE---MP----------------------------------V 199
+R LS RS+ +P V
Sbjct: 91 PLSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAV 150
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
++ ++ Y K G + A +F+ +P+R+ SW+ M++GY +++A ++F M
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210
Query: 260 --RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT-----LLDMTSGVAKVLHGNALID 312
E+ + V L LG L +G+++H LLD S N+L+
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLG-LLMGEQMHGLIVKDGLLDFVSV------ENSLVT 263
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAK G + A VF R+R+ TWS +I G A +G A+ +++MF +M PTE T
Sbjct: 264 MYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFT 323
Query: 373 FVGVLVACSHAGKVEEGKKYFKLM 396
FVGVL A S G + GK+ LM
Sbjct: 324 FVGVLNASSDLGALAVGKQAHGLM 347
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 204/368 (55%), Gaps = 34/368 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A K+F K+ E D +NT++ AQ +A+ Y++ + I+ N F+F+ VL
Sbjct: 140 GMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVL 199
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C +L + VHG+I+ GF N VV
Sbjct: 200 TVCVKLKEVGLTRQVHGQILVAGFLSN-------------------------------VV 228
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
SS+ Y + G + AR LFDEM RD+++W M++GYAK G+M+ ANELF E+P+++
Sbjct: 229 LSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKN 288
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW A+ISGY GM +ALE+F +M RPD T S L ACA + L+ GK++H
Sbjct: 289 PVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHA 348
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHGFA 351
LL + ++ +ALIDMY+KCGS+ +VF M ++ DV W+T+I LA HG
Sbjct: 349 YLLRINFQPNTIV-VSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCG 407
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411
EE+I M +M R +P +ITFV +L ACSH+G V++G +F+ M +Y I P+ HY
Sbjct: 408 EEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYAC 467
Query: 412 HGDVELGR 419
D+ LGR
Sbjct: 468 LIDL-LGR 474
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 166/320 (51%), Gaps = 47/320 (14%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+ G+ AR +FD+M R+L SWN M++GYAK G ++ A +LF+++P++DVVSWN M+
Sbjct: 105 YAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMV 164
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+ CG +AL + E R +G + + + +LT C L ++ + ++VH +L +
Sbjct: 165 IAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQIL-VAGF 223
Query: 301 VAKVLHGNALIDMYAKC-------------------------------GSIERAIEVFLG 329
++ V+ ++++D Y KC G ++ A E+F+
Sbjct: 224 LSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVE 283
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M +++ +W+ LI G A +G +++ +F +M VRP + TF L AC+ ++ G
Sbjct: 284 MPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHG 343
Query: 390 KK-YFKLMRDEYNIEPN-------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
K+ + L+R N +PN I Y G + +GR ++ ++ ++ D VL +
Sbjct: 344 KQIHAYLLR--INFQPNTIVVSALIDMYSKCGSLGIGR----KVFDLMGNKL-DVVLWNT 396
Query: 442 IYASRGEWNRVEKVRKLMDD 461
I ++ + E+ +++DD
Sbjct: 397 IISALAQHGCGEEAIQMLDD 416
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/466 (30%), Positives = 236/466 (50%), Gaps = 72/466 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A K+F K+ E D +NT++ A+S DA+ Y ++ + I N+++F+ +L
Sbjct: 131 GKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLL 190
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
C ++ + HG+++ GF N + +S++ +A C ++ A LFD DV+
Sbjct: 191 NICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVL 250
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
AW+++ +GYA+ G++ AR LFD MP ++ V+W +I GYA+
Sbjct: 251 AWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARH----------------- 293
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+ +ALE+F +M ++ RPD T S L A A + L GK++H
Sbjct: 294 --------------DLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHG 339
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHGFA 351
L+ T+ + ++LIDMY+KCG +E VF M D+ DV W+T+I LA HG
Sbjct: 340 YLIR-TNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRG 398
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
+E+I MF +M RL ++P IT + +L ACSH+G V+EG + ++ + + + PN HY
Sbjct: 399 QEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYAC 458
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+HG++E GR ++++ +
Sbjct: 459 LIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQS 518
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
S YVLLS+I+A+ G W VE VR+LM++ ++K S IE ++K
Sbjct: 519 SAAYVLLSSIHAAVGRWELVENVRQLMNERHVRKDRAISWIEIENK 564
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 185/399 (46%), Gaps = 80/399 (20%)
Query: 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEF-NRFVRNSLIYFHANCGDLNTASV 161
P+K T +++L+ C +G VH + G + N F+ N LI ++ CGD +A
Sbjct: 49 PSK-TLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYK 107
Query: 162 LFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA 221
+FD + ++ +W+ + +GYA+ G++ AR LFD+MP +D+VSWN M+ YAK G
Sbjct: 108 VFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSG----- 162
Query: 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
C AL + E+R +G ++ + LL C +
Sbjct: 163 -----------------------FC---NDALRFYRELRRLGIGYNEYSFAGLLNICVKV 196
Query: 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC------------------------ 317
+LE+ K+ H +L + ++ ++ ++++D YAKC
Sbjct: 197 KELELSKQAHGQVL-VAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTM 255
Query: 318 -------GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
G +E A E+F M +++ W++LI G A H +++ +F +M L +RP +
Sbjct: 256 VSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQ 315
Query: 371 ITFVGVLVACSHAGKVEEGKK-YFKLMRDEYNIEPN-------IRHYGVHGDVELGRLAN 422
TF L A + + GK+ + L+R NI PN I Y G +E+GRL
Sbjct: 316 FTFSSCLCASASIASLNHGKQIHGYLIRT--NIRPNTIVVSSLIDMYSKCGCLEVGRL-- 371
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
+ ++ D+ D VL + I +S + R ++ ++ DD
Sbjct: 372 --VFDLMGDK-WDVVLWNTIISSLAQHGRGQEAIQMFDD 407
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 31/172 (18%)
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
QA+ + G R T+ LL CA+ L++GK VH L N L
Sbjct: 33 QAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHL 92
Query: 311 IDMYAKCGSIERAIEVF--------------------LG-----------MRDRDVSTWS 339
I+MY+KCG A +VF LG M ++DV +W+
Sbjct: 93 INMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWN 152
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
T++ A GF +++ +RE++RL + E +F G+L C ++E K+
Sbjct: 153 TMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQ 204
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 156/472 (33%), Positives = 229/472 (48%), Gaps = 91/472 (19%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
Y +F + F N ++R +PL + L+++ + N +F+F+L + +
Sbjct: 97 YPLALFRRANSTSAFASNNLLR---VLPHPLP-LTLFSRFRR----RNPHSFTFLLASIS 148
Query: 117 RLLYRN---------MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
L +G VH VK G + FVRN+L++F+ GD+
Sbjct: 149 NHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAM-------- 200
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEMEKANELFN 226
R +FDE+P VRD+++WN ++ GY + G M A E+F+
Sbjct: 201 -----------------------RRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFD 237
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
E+P RD +SW+ ++ GYV + AL +F M G RP+ +++ L+A A LG LE
Sbjct: 238 EMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEH 297
Query: 287 GKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
GK VH + SG+ ++ G AL+DMYAKCG + A EVF GMR RDV W+ +I GL
Sbjct: 298 GKFVHNVV--QRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGL 355
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
A HG +++ +F + PT +TFVGVL CS +G V EG++YFKL+ ++Y IEP
Sbjct: 356 AAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPE 415
Query: 406 IRHYG---------------------------------------VHGDVELGRLANKRLL 426
+ HYG HG V+LG +L+
Sbjct: 416 MEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLI 475
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ SG YVLLS IYA +W+ V +VRKLM K G SL+EA K
Sbjct: 476 ELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGK 527
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 87/385 (22%), Positives = 162/385 (42%), Gaps = 45/385 (11%)
Query: 26 ALVTINGFNSDSSALREL---------------IYSGSVVIPGAINYAHKMFVKITEPDT 70
ALV G + D A+R + + +G V G + A ++F ++ D
Sbjct: 186 ALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAG-YVRAGMMTVAREVFDEMPVRDE 244
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++T++ G + + A+ ++ M + ++PN+ L A RL G VH
Sbjct: 245 ISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNV 304
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+ + G V +L+ +A CG + A +FDG + DV AW+++ G A G A
Sbjct: 305 VQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDA 364
Query: 191 RSLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNEVPKR-----DVVSWNAMIS 241
LF+ L NV ++ G ++ G + + F + ++ ++ + M+
Sbjct: 365 VELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVD 424
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT--- 298
G+ +A+E+ E M PD V ++L++C G +++G V L+++
Sbjct: 425 LLGRAGLVPEAIELIEGMHIA---PDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTH 481
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV---STWSTLIGGLAFHGF----- 350
SG +L G +YAK + EV M R + WS + H F
Sbjct: 482 SGYYVLLSG-----IYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDT 536
Query: 351 -AEESIAMFREMQRLKVRPTEITFV 374
++S+ ++ + + R TE +V
Sbjct: 537 YHKDSVQIYDTLDMINKRLTEAGYV 561
>gi|354805242|gb|AER41656.1| CRR4 [Oryza rufipogon]
Length = 752
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 199/347 (57%), Gaps = 14/347 (4%)
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E N N+++ A GD+ TA +FD + V+W+ + +GYA G++ ARS+FD
Sbjct: 212 ERNVVSWNTVVAGFARMGDMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR 271
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
M +D+VSW M++ YAK G+++ ANELF+ +P +++VSWNAMI+GY +AL F
Sbjct: 272 MDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 331
Query: 257 EEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGNALI 311
+ M G RPD+ T++S+++ACA LG +E +C + G + V GNALI
Sbjct: 332 QLMMLEGRFRPDEATLVSVVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALI 386
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DM+AKCG + RA +F M R + TW+T+I G AF+G +++ ++ M R V+ +
Sbjct: 387 DMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDT 446
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----VHGDVELGRLANKRLLN 427
F+ L AC+H G ++EG F M + YNI+P + HYG + G EL +K++
Sbjct: 447 VFIAALAACAHGGLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITE 506
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ S VL+SN A G W+ V R M + I+K PG S I+
Sbjct: 507 LEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSIQ 553
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 151/296 (51%), Gaps = 50/296 (16%)
Query: 101 IKPNKFTFSFVLKACTRL-LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN-- 157
+ PN FTF+F+L+AC L L R G CVHG+IV+ GF + FV+N+L+ + CG
Sbjct: 107 VPPNGFTFTFLLRACALLGLPRPCG-CVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGG 165
Query: 158 -----TASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY 212
A +FD DVV+W+S+ Y G+ + A F+ MP R++VSWN ++ G+
Sbjct: 166 GGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGF 225
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
A+ G+M A +F+ +P R+ VSWN MISGY G + A +F+ M ++ D V+
Sbjct: 226 ARMGDMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRM----DQKDVVSWT 281
Query: 273 SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
++++A A +GDL+ A E+F M
Sbjct: 282 AMVSAYAKIGDLDT------------------------------------ANELFDHMPV 305
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQ-RLKVRPTEITFVGVLVACSHAGKVE 387
+++ +W+ +I G + +E++ F+ M + RP E T V V+ AC+ G VE
Sbjct: 306 KNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVE 361
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 20/212 (9%)
Query: 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322
G P+ T LL ACA LG VH ++ G + V NAL+D+Y +CG
Sbjct: 106 GVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFG-SDVFVQNALMDVYHRCGGGGG 164
Query: 323 -------AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
A +VF M DRDV +W++++G G A ++ F M V +++
Sbjct: 165 GGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNV----VSWNT 220
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGRLANKRLLNMRKDES 433
V+ + G + + F M + N I Y GDVE R R M + +
Sbjct: 221 VVAGFARMGDMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR---MDQKDV 277
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
+ + + YA G+ ++ +L D +K
Sbjct: 278 VSWTAMVSAYAKIGD---LDTANELFDHMPVK 306
>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/428 (32%), Positives = 226/428 (52%), Gaps = 79/428 (18%)
Query: 124 GFCVHGKIVKYGFEFNR---FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
G +HG++ K+GF +V +L+ F+ GD+ A +FD A+ +VV+W+S+ AG
Sbjct: 3 GISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAG 62
Query: 181 YARRGELSMARSLFDEMPVRDLVSWN-------------------------------VMI 209
Y + G++ A SLF +MP R+ SWN MI
Sbjct: 63 YLKAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMI 122
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS--VGERPD 267
+GY+K G+++ A ELF++V +D++ +NAMI+ Y +AL +F M + V +PD
Sbjct: 123 SGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPD 182
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEV 326
++T+ S+++AC+ LGDL G + + + G+ H AL+D+YAKCGSI++A E+
Sbjct: 183 EMTLASVISACSQLGDLRFGPWIESYMRRL--GIEMDGHLATALLDLYAKCGSIDKAYEL 240
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F G+R +D+ ++ +I G +G A ++I +F EM ++ P ITF+G+L A +HAG V
Sbjct: 241 FHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLV 300
Query: 387 EEGKKYFKLMRDEYNIEPNIRHYGV----------------------------------- 411
EEG + F M+ +YN+ P++ HYG+
Sbjct: 301 EEGYRCFTSMK-KYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLL 359
Query: 412 ----HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
H +VE G +A + + D +G LLSNIYAS W+ V+++RK+ + K
Sbjct: 360 ACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKI 419
Query: 468 PGCSLIEA 475
PGCS +E+
Sbjct: 420 PGCSWMES 427
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 128/256 (50%), Gaps = 15/256 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSF 110
G ++ A ++F ++ D ++N +I AQ+ P +A+ L+ M +++P++ T +
Sbjct: 129 GDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLAS 188
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
V+ AC++L G + + + G E + + +L+ +A CG ++ A LF G K D
Sbjct: 189 VISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKD 248
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFN 226
+VA++++ G G+ A LFDEM + +++ ++T Y G +E+ F
Sbjct: 249 LVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFT 308
Query: 227 EVPKRDVVS----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ K ++V + M+ + G ++ALE+ ++S+ +P +LL AC
Sbjct: 309 SMKKYNLVPSVDHYGIMVDLFGRAGRLQEALEL---IKSMPMQPHAGVWGALLLACRLHN 365
Query: 283 DLEVGKKV--HCTLLD 296
++E G+ HC L+
Sbjct: 366 NVEFGEIAAQHCFELE 381
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 152/493 (30%), Positives = 239/493 (48%), Gaps = 80/493 (16%)
Query: 26 ALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQN 85
AL +G + ++ + G P + AH++F +I EPDTF YN ++ ++ N
Sbjct: 80 ALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVN 139
Query: 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145
A + +M P K S+ N+
Sbjct: 140 FEKAQSFFDRM------PFKDAASW---------------------------------NT 160
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
+I +A G++ A LF + + V+W+++ +GY G+L A F PVR +V+W
Sbjct: 161 MITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAW 220
Query: 206 NVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
MITGY K ++E A +F ++ +++V+WNAMISGYV + L++F M G
Sbjct: 221 TAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGI 280
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
RP+ + S L C++L L++G+++H ++ ++ V +LI MY KCG + A
Sbjct: 281 RPNSSGLSSALLGCSELSALQLGRQIH-QIVSKSTLCNDVTALTSLISMYCKCGELGDAW 339
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
++F M+ +DV W+ +I G A HG A++++ +FREM K+RP ITFV VL+AC+HAG
Sbjct: 340 KLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAG 399
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------------- 410
V G YF+ M +Y +EP HY
Sbjct: 400 LVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTL 459
Query: 411 -----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
VH +VEL A ++LL + + YV L+NIYAS+ W V +VRK M +S++
Sbjct: 460 LGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVV 519
Query: 466 KQPGCSLIEADDK 478
K PG S IE +K
Sbjct: 520 KVPGYSWIEIRNK 532
>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g47840-like [Cucumis
sativus]
Length = 712
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/538 (26%), Positives = 253/538 (47%), Gaps = 93/538 (17%)
Query: 30 INGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQ 84
++GF S L ++ GS ++ G I + K+F ++ + + +I G ++
Sbjct: 138 LHGF-SVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAG 196
Query: 85 NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRN 144
+ ++ M + ++ + + ++ LKA N G +H + +K GF+ N FV N
Sbjct: 197 YSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVAN 256
Query: 145 SLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV- 203
SL + CG L+ F +DVV+W+++ Y + G+ F M +++
Sbjct: 257 SLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIP 316
Query: 204 ------------------SW--------------------NVMITGYAKQGEMEKANELF 225
W N ++T Y+K GE+ +++F
Sbjct: 317 NEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVF 376
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+ RD+++W+ +I+ Y G ++A E MRS G +P++ + S+L+ C + LE
Sbjct: 377 CSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILE 436
Query: 286 VGKKVHCTLL----DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
GK++H +L + TS V +ALI MYAKCGSI A ++F+ D+ +W+ +
Sbjct: 437 QGKQLHAHVLSVGLEQTSMVC-----SALIIMYAKCGSIAEASKIFMDSWKDDIISWTAM 491
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I G A HG ++E+I +F +Q++ +RP +TF+GVL ACSHAG V+ G YF M +Y+
Sbjct: 492 ISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYH 551
Query: 402 IEPNIRHYG---------------------------------------VHGDVELGRLAN 422
I P+ HYG +HGDV+ G+ A
Sbjct: 552 ITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAA 611
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
+L + + +G ++ L+NI+A++G+W +R LM + K+PG S ++ D F
Sbjct: 612 AEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVF 669
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 170/379 (44%), Gaps = 51/379 (13%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME-KCSIKPNKFTFSFVLKACT 116
A +F ++ + D + II G S + +A+ L+++M + ++ + F S LK C
Sbjct: 68 ARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCG 127
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
L G +HG VK G + FV ++L+ + G++ + +FD + V W++
Sbjct: 128 LGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTA 187
Query: 177 LTAGYAR-----------------------------------RGELSMARSL-------- 193
+ G R G L+ RS+
Sbjct: 188 VITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKG 247
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FDE V+ N + T Y K G+++ F ++ DVVSW +++ Y+ G L
Sbjct: 248 FDE---NSFVA-NSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGL 303
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALID 312
+ F+ MR+ P++ T ++++ CA+ L+ G+++H +L + G L N+++
Sbjct: 304 QAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCV--GFVNALSVANSIMT 361
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
+Y+KCG + +VF M+ RD+ TWST+I + G+ EE+ M+ +P E
Sbjct: 362 LYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFA 421
Query: 373 FVGVLVACSHAGKVEEGKK 391
VL C +E+GK+
Sbjct: 422 LASVLSVCGSMAILEQGKQ 440
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 4/192 (2%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
DL N + K ++ A +LF+++P+RD VSW +ISGYV + +AL +F +MR
Sbjct: 48 DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107
Query: 261 SVGERPDDVTMLSLLTACADLG-DLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAKCG 318
E D +LSL LG + G +H + G V V G+AL+DMY K G
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHG--FSVKXGLVNSVFVGSALLDMYMKIG 165
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
I R+ +VF M R+ TW+ +I GL G++E +A F M R KV + L
Sbjct: 166 EIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALK 225
Query: 379 ACSHAGKVEEGK 390
A + +G + G+
Sbjct: 226 ASADSGALNHGR 237
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 154/355 (43%), Gaps = 26/355 (7%)
Query: 4 NRHRSSRLWKKCTNLRTLK---QIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYA 58
N + S + C N LK Q+ A V GF + S + +YS G +
Sbjct: 317 NEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKC----GELASV 372
Query: 59 HKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118
K+F + D ++TII +Q +A ++M KPN+F + VL C +
Sbjct: 373 SKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSM 432
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
G +H ++ G E V ++LI +A CG + AS +F K D+++W+++
Sbjct: 433 AILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMI 492
Query: 179 AGYARRGELSMARSLFDEMPV----RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+GYA G A LF+ + D V++ ++T + G ++ FN + K +
Sbjct: 493 SGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHI 552
Query: 235 S-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
+ + MI G A + +RS+ + DDV +LL AC GD++ G++
Sbjct: 553 TPSKEHYGCMIDLLCRAGRLHDAETL---IRSMPIQWDDVVWSTLLRACRIHGDVDCGQR 609
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV---STWSTL 341
+L + A L +++A G + A + + M+ + V WS++
Sbjct: 610 AAAEVLKLDPNCAGT--HITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSV 662
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 163/529 (30%), Positives = 255/529 (48%), Gaps = 85/529 (16%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
K +L LKQ+QA +T G +LI ++ + + YA +F I +T ++
Sbjct: 15 KSNHLNHLKQLQAYLTTLGHAHTHFYAFKLIRFCTLTLSN-LTYARLIFDHIPSLNTHLF 73
Query: 74 NTIIRG-SAQSQNPLDAVFLYTQMEKCSI-KPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+I +A A+ L+ M + +PN F F LK C +H +I
Sbjct: 74 TAMITAYAAHPATHPSALSLFRHMLRSQPPRPNHFIFPHALKTCPESCAAE---SLHAQI 130
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
VK GF V+ +L+ D +K+ G L A+
Sbjct: 131 VKSGFHEYPVVQTALV----------------DSYSKVS--------------GGLGNAK 160
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+FDEM R +VS+ M++G+A+ G++E A +F E+ RDV SWNA+I+G G Q
Sbjct: 161 KVFDEMSDRSVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQ 220
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA---KVLHGN 308
+E+F M RP+ VT++ L+AC +G L++G+ +H + +G+A VL N
Sbjct: 221 GIELFRRMVFECNRPNGVTVVCALSACGHMGMLQLGRWIHGYVYK--NGLAFDSFVL--N 276
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR--LKV 366
AL+DMY KCGS+ +A +VF ++ +++W+++I A HG ++ +IA+F +M V
Sbjct: 277 ALVDMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGGV 336
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------------- 410
RP E+TFVG+L AC+H G VE+G YF++M EY IEP I HYG
Sbjct: 337 RPDEVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDEAM 396
Query: 411 -----------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
VHG +L A K+L+ + G ++L+N+Y G
Sbjct: 397 DVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLIEIDPHNGGYRIMLANVYGELG 456
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
+W+ V V + + K PGCS IE DD+ Y + K P + +L
Sbjct: 457 KWDEVRNVWRTLKQQKSYKVPGCSWIEVDDQVHQFYSLD-KSNPKTEDL 504
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/466 (30%), Positives = 234/466 (50%), Gaps = 70/466 (15%)
Query: 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF 106
G +V G ++ A ++ V+ E + + ++I G +++ P DAV+ + M + P++
Sbjct: 179 GGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEV 238
Query: 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166
L AC++L ++G +H + + + +LI +A CGD+ A +FD
Sbjct: 239 AVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDA- 297
Query: 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
G ++ E WN +I GY K G ++ A LF+
Sbjct: 298 ------------VGRGQKPE-----------------PWNAIIDGYCKLGHVDVARSLFD 328
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
++ RDV+++N+MI+GY+ G + AL++F +MR G R D+ T++SLLTACA LG L
Sbjct: 329 QMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPH 388
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
G+ +H ++ + V G AL+DMY KCG ++ A VF M +RDV TW+ +I GLA
Sbjct: 389 GRALHASI-EQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLA 447
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
F+G ++++ F +M+R +PT +T++ VL ACSH+ ++EG+ +F MR + + P +
Sbjct: 448 FNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQV 507
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HYG VH +++L R A + LL
Sbjct: 508 EHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLK 567
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ +E YV L NIY +W ++VR LM++ +KK G S I
Sbjct: 568 LAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSI 613
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 172/389 (44%), Gaps = 14/389 (3%)
Query: 12 WKKCTNLRTLKQIQALVTINGFNSDSSALRELIYS--GSVVIPGAINYAHKMFVKITEPD 69
W ++R Q+ AL+T +G + + L+ S ++ P + Y +F ++
Sbjct: 6 WPTPRSVRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHST 65
Query: 70 TFMYNTIIRGSAQSQNPLD-AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV- 127
TF+++T +R Q+ D V L +M ++ FTF FV + C G C+
Sbjct: 66 TFLFDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLM 125
Query: 128 -HGKIVKYGF-EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
H ++ V N LI+ +A+ G + A FD D V W+++ G R G
Sbjct: 126 LHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWG 185
Query: 186 ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWN-AMISGYV 244
L AR L + P R++VSW +I GY++ G A FN + V A+I
Sbjct: 186 LLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALS 245
Query: 245 LCGMNKQALEMFEEMRSVGE---RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301
C K VG+ R D +++L+ A GD+ + V D
Sbjct: 246 ACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAV----FDAVGRG 301
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
K NA+ID Y K G ++ A +F M RDV T++++I G G +++ +F +M
Sbjct: 302 QKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQM 361
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+R +R T V +L AC+ G + G+
Sbjct: 362 RRHGMRADNFTVVSLLTACASLGALPHGR 390
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 156/537 (29%), Positives = 252/537 (46%), Gaps = 82/537 (15%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
+L KQ+ + +G +SD S L+ S + G +A ++F + D +N++
Sbjct: 919 DLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKM--GCAYFAREVFNDMKHLDLISWNSM 976
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVHGKIVKYG 135
I AQS ++V L+ + +KP+ FT + VL+AC+ L+ N+ +H +K G
Sbjct: 977 ISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTG 1036
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF- 194
+ FV +LI ++ G + A LF +D+ W+++ GY + A LF
Sbjct: 1037 NIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFS 1096
Query: 195 ---------DEMPV-----------------------------RDLVSWNVMITGYAKQG 216
D++ + DL + ++ Y K G
Sbjct: 1097 LIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCG 1156
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
+M A +FN + D V+W +MISG V G QAL ++ MR PD+ T +L+
Sbjct: 1157 DMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIK 1216
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
A + + LE G+++H ++ + V+ G +L+DMYAKCG+IE A +F M R+++
Sbjct: 1217 ASSCVTALEQGRQLHANVIKLDC-VSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIA 1275
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
W+ ++ GLA HG AEE++ +F+ M+ + P ++F+G+L ACSHAG E +Y M
Sbjct: 1276 LWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSM 1335
Query: 397 RDEYNIEPNIRHYG---------------------------------------VHGDVEL 417
++Y IEP I HY + GDVE
Sbjct: 1336 PNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVET 1395
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
G+ RL + +S YVLLSNIYA+ W+ V RK+M ++KK PG S I+
Sbjct: 1396 GKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWID 1452
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 168/359 (46%), Gaps = 42/359 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQS-----QNPLDAVFLYTQMEKCSIKPNKFT 107
G+++ A ++F E D +N I+ A S N + + L+ + + T
Sbjct: 670 GSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMT 729
Query: 108 FSFVLKAC--TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165
+ VLK C + L+ G VHG +K G E++ FV +L+ ++ CG + A +LFD
Sbjct: 730 LAPVLKLCLNSGCLWAAEG--VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDW 787
Query: 166 DAKMDVVAWSSLTAGYARRGELSMARSLF----------DEMPVRDL------VSWNV-- 207
+ DVV W+ + GY + G A LF DE V+ + V+W+
Sbjct: 788 MRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGK 847
Query: 208 ----MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
+ YA + + N DV WN +S + G N A+E F M +
Sbjct: 848 WLADQVQAYAAKLSLSDDNP--------DVFCWNKKLSECLWAGDNWGAIECFVNMNGLN 899
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIER 322
D VT+L +L A A DLE+GK+VH + + SG+ + V N+L++MY+K G
Sbjct: 900 IDYDAVTLLVVLAAVAGTDDLELGKQVHG--IAVKSGLDSDVSVANSLVNMYSKMGCAYF 957
Query: 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A EVF M+ D+ +W+++I A EES+ +F ++ ++P T VL ACS
Sbjct: 958 AREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACS 1016
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
LL +L +GK H ++ S L N L+ MY+KCGS+ A +VF +R
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNN-LLTMYSKCGSLSSARQVFDTTPER 685
Query: 334 DVSTWSTLIGGLAFH-----GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
D+ TW+ ++G A G A+E + +FR ++ T +T VL C ++G
Sbjct: 686 DLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSG 741
>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 157/556 (28%), Positives = 267/556 (48%), Gaps = 84/556 (15%)
Query: 7 RSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT 66
R L C + + QI AL+ G +S L+ + I G I A +F K+
Sbjct: 9 RLKHLLLACKDEAPVTQIHALIITTGLFFANSNFNGLVIASYARI-GGITSARHLFDKLP 67
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
+ +N +I ++ + + + LY QM KP+ TF+ +KA + L G
Sbjct: 68 QRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGER 127
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+ + V +G+ + FV +S++ + CG ++ A ++FD K DVV W+++ G + G
Sbjct: 128 IWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGN 187
Query: 187 LSMARSLFD----------------------------------------EMPVRDLVSWN 206
+ A +F EM + D++
Sbjct: 188 VLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQT 247
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
++ YAK G++E A+ +F ++P+++ VSW A+ISG+ G + AL++ EM+S+ +P
Sbjct: 248 SLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKP 307
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326
D ++S L AC+ +G L++GK +H ++ G VL G ALIDMYAKCGS+ A +
Sbjct: 308 DTAVLVSALLACSQVGHLKLGKSIHGYIVRRL-GFELVL-GTALIDMYAKCGSLSCAHAI 365
Query: 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
F + RDV W+T+I HG +E +++F +M+ + P TF +L A SH+G+V
Sbjct: 366 FDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQV 425
Query: 387 EEGKKYFKLMRDEYNIEPNIRHY------------------------------------- 409
+ G+ +F M +E I P+ +HY
Sbjct: 426 DVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLS 485
Query: 410 GVHG--DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467
G H ++ G +A K++L++ D+ G Y L+SN ++ W+RV +RK+M ++ +KK
Sbjct: 486 GCHNYRNLLFGEVAAKKILDLNPDDLGIYALVSNFFSLARMWDRVSILRKIMKETGMKKV 545
Query: 468 PGCSLIEADDK--AFL 481
PG S +E + K AFL
Sbjct: 546 PGYSAVEVNGKHEAFL 561
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 156/472 (33%), Positives = 229/472 (48%), Gaps = 91/472 (19%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
Y +F + F N ++R +PL + L+++ + N +F+F+L + +
Sbjct: 97 YPLALFRRANSTSAFASNNLLR---VLPHPLP-LTLFSRFRR----RNPHSFTFLLASIS 148
Query: 117 RLLYRN---------MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
L +G VH VK G + FVRN+L++F+ GD+
Sbjct: 149 NHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAM-------- 200
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEMEKANELFN 226
R +FDE+P VRD+++WN ++ GY + G M A E+F+
Sbjct: 201 -----------------------RRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFD 237
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
E+P RD +SW+ ++ GYV + AL +F M G RP+ +++ L+A A LG LE
Sbjct: 238 EMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEH 297
Query: 287 GKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
GK VH + SG+ ++ G AL+DMYAKCG + A EVF GMR RDV W+ +I GL
Sbjct: 298 GKFVHNVV--QRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGL 355
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
A HG +++ +F + PT +TFVGVL CS +G V EG++YFKL+ ++Y IEP
Sbjct: 356 AAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPE 415
Query: 406 IRHYG---------------------------------------VHGDVELGRLANKRLL 426
+ HYG HG V+LG +L+
Sbjct: 416 MEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLI 475
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ SG YVLLS IYA +W+ V +VRKLM K G SL+EA K
Sbjct: 476 ELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGK 527
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 159/384 (41%), Gaps = 43/384 (11%)
Query: 26 ALVTINGFNSDSSALRELI--------------YSGSVVIPGAINYAHKMFVKITEPDTF 71
ALV G + D A+R + V G + A ++F ++ D
Sbjct: 186 ALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEI 245
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
++T++ G + + A+ ++ M + ++PN+ L A RL G VH +
Sbjct: 246 SWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVV 305
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+ G V +L+ +A CG + A +FDG + DV AW+++ G A G A
Sbjct: 306 QRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAV 365
Query: 192 SLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNEVPKR-----DVVSWNAMISG 242
LF+ L NV ++ G ++ G + + F + ++ ++ + M+
Sbjct: 366 ELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDL 425
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT---S 299
G+ +A+E+ E M PD V ++L++C G +++G V L+++ S
Sbjct: 426 LGRAGLVPEAIELIEGMHIA---PDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHS 482
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV---STWSTLIGGLAFHGF------ 350
G +L G +YAK + EV M R + WS + H F
Sbjct: 483 GYYVLLSG-----IYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTY 537
Query: 351 AEESIAMFREMQRLKVRPTEITFV 374
++S+ ++ + + R TE +V
Sbjct: 538 HKDSVQIYDTLDMINKRLTEAGYV 561
>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 158/546 (28%), Positives = 251/546 (45%), Gaps = 126/546 (23%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
AHKMF +I + D F + +I G A+ D + L+T+M+ + PN+FT S VLK+C+
Sbjct: 340 AHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSS 399
Query: 118 LLYRN-MGFCVHGKIVKYGFEFNRFVRNSLIYFHANC----------------------- 153
+ + +G +HG I++ G + + + NS++ ++ C
Sbjct: 400 NVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNI 459
Query: 154 --------GDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM----PVRD 201
GD+ + LF D +W+++ G R G +A L +M P +
Sbjct: 460 MMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFN 519
Query: 202 LVSW-----------------------------------NVMITGYAKQGEMEKANELFN 226
+++ N +I Y K GEMEKA+ +F
Sbjct: 520 KLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFK 579
Query: 227 EVPKR---------------DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
+P+ + VSW++M+SGYV G + AL+ F M D T+
Sbjct: 580 HLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTL 639
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
S+++ACA G LE+G++VH + + G+ V G+++IDMY KCGS+ A +F +
Sbjct: 640 TSVVSACASAGVLELGRQVHGYIQKIGHGL-DVFLGSSIIDMYVKCGSLNDAWLIFNQAK 698
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
DR+V W+++I G A HG E++ +F M + P E++FVGVL ACSHAG +EEG K
Sbjct: 699 DRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCK 758
Query: 392 YFKLMRDEYNIEPNIRH-------YG--------------------------------VH 412
YF+LMR+ Y I P H YG VH
Sbjct: 759 YFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVH 818
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
++E+G K+LL + ++G Y+L S+I A+ W K+R LM +KK P S
Sbjct: 819 KNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSW 878
Query: 473 IEADDK 478
I+ ++
Sbjct: 879 IQLKNQ 884
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N ++ YAK +E+A+++F E+P+ DV SW +ISG+ G++ L +F +M+ G
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384
Query: 266 PDDVTMLSLLTAC-ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
P+ T+ +L +C +++ D +GK +H +L + VL+ N+++D Y KC A
Sbjct: 385 PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLN-NSILDYYVKCRCFGYAE 443
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
++F M ++D +W+ ++ G ++S+ +FR++
Sbjct: 444 KLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQL 480
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
+ GN L+++YAK ++E+A ++F + DV +W+ LI G A G + + + +F +MQ
Sbjct: 322 IRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQ 381
Query: 365 KVRPTEITFVGVLVACS 381
V P + T VL +CS
Sbjct: 382 GVCPNQFTLSIVLKSCS 398
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 227/462 (49%), Gaps = 76/462 (16%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV--L 112
I+ A ++F +I E D + T+I G + DA+ Y QM + N + V +
Sbjct: 226 IDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVG-EVGANDYEVLLVDLM 284
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC R G +H I+K GF+ FV+ +L++F+ CG + A + F K
Sbjct: 285 KACARYSAVTEGQQLHTVILKNGFDALAFVQATLVHFYGCCGLIGLAQMTFRLSDK---- 340
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
S TA SWN ++ + G + +A ELF+++P+RD
Sbjct: 341 ---SHTA------------------------SWNALLAALLRNGLIREARELFDDMPERD 373
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW+ MISGYV G + AL++F M + P++VT+ S L+A AD G L+ GK +H
Sbjct: 374 TVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHD 433
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHGF 350
+++ + L + LIDMYAKCGSI A++ F + D+ VS W+ +I LA HG+
Sbjct: 434 YIMNRPVQLTDNL-SSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGY 492
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
A S+ +F ++QR ++P ITF+GVL AC HAG V +GK YF+ M EY I+P I+HYG
Sbjct: 493 AHMSLDLFSQLQRTSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYG 552
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
G+V LG A + L + +
Sbjct: 553 CMVDLLGRAGYLEEAEQLVSMMPMKPDVVIWGSILSASRAQGNVALGERAAEELAKLDQT 612
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ LSNIYA G W V VRK + D+++++ G S I
Sbjct: 613 HGASKIALSNIYADAGHWTNVSVVRKELQDANLERLTGRSGI 654
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 187/415 (45%), Gaps = 39/415 (9%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP--DT 70
K+ LR +Q+ AL +G + + +R + S +P ++ A ++F + P D
Sbjct: 17 KRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDETPPPLRDA 76
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
N+I+ ++ + A L +M + I + +++ ++ A R + V
Sbjct: 77 TARNSILAALTRAGHLDRAQGLLEEMPR--IHRDAVSYTTLVTAFARAGHAARAVAVFRS 134
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVL--FDGDAKMD--VVAWSSLTAGYARRGE 186
++ N I A CG T ++ F +D V+ ++L YA E
Sbjct: 135 MLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVLE 194
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
L AR+LFD M R+ V+WNVM+ GY K ++ A E+F +P+RD VSW +I GY+
Sbjct: 195 LCSARALFDGMTHRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICA 254
Query: 247 GMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL---------- 295
+ A++ + +M VG +V ++ L+ ACA + G+++H +L
Sbjct: 255 DLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDALAFV 314
Query: 296 -----------------DMTSGVAKVLHG---NALIDMYAKCGSIERAIEVFLGMRDRDV 335
MT ++ H NAL+ + G I A E+F M +RD
Sbjct: 315 QATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDT 374
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+WST+I G G ++ ++ +F M + P E+T L A + +G +++GK
Sbjct: 375 VSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGK 429
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 227/450 (50%), Gaps = 75/450 (16%)
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN---MGFC 126
T + + I ++ N L A + QM + ++PN T +L AC + G
Sbjct: 52 TVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAA 111
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
+H K+GF N DV+ ++L YA+ G+
Sbjct: 112 LHTHAFKHGFAMN------------------------------DVMVGTALIDMYAKCGK 141
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
L AR +FD+M VR+LVSWN MI GY K G+++ A +LF+++P ++VVSW +I G+V
Sbjct: 142 LDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKK 201
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT-SGVAKVL 305
++ALE F EM+ G PD VT++++++ACA+LG L +G VH ++ KVL
Sbjct: 202 ECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVL 261
Query: 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365
N+LIDMYA+CG IE A +VF GM R++ +W+++I G A +G A+++++ FR M++
Sbjct: 262 --NSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEG 319
Query: 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------- 410
+ P +++ L ACSHAG ++EG K F ++ ++ P I HYG
Sbjct: 320 LEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEA 379
Query: 411 ------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446
GDVEL K + + +YVL SNIYA+
Sbjct: 380 WDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELYPGGDSNYVLFSNIYAAV 439
Query: 447 GEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G+W+ KVR+ M + ++K S IE D
Sbjct: 440 GKWDGASKVRREMKERGLQKNLAFSSIEID 469
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 145/293 (49%), Gaps = 20/293 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A K+F K+ + + +I G + + +A+ + +M+ + P+ T ++
Sbjct: 171 GDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAII 230
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L +G VH ++K F N V NSLI +A CG + A +FDG ++ ++V
Sbjct: 231 SACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLV 290
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV 228
+W+S+ G+A G A S F M L VS+ +T + G +++ ++F ++
Sbjct: 291 SWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADI 350
Query: 229 PKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
KRD + + ++ Y G K+A ++ ++M + P++V + SLL AC G
Sbjct: 351 -KRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMM---PNEVVLGSLLAACRTQG 406
Query: 283 DLEVGKKVHCTLLDMTSGVAK--VLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
D+E+ +KV +++ G VL N +YA G + A +V M++R
Sbjct: 407 DVELAEKVMKYQVELYPGGDSNYVLFSN----IYAAVGKWDGASKVRREMKER 455
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 156/472 (33%), Positives = 229/472 (48%), Gaps = 91/472 (19%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
Y +F + F N ++R +PL + L+++ + N +F+F+L + +
Sbjct: 97 YPLALFRRANSTSAFASNNLLR---VLPHPLP-LTLFSRFRR----RNPHSFTFLLASIS 148
Query: 117 RLLYRN---------MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
L +G VH VK G + FVRN+L++F+ GD+
Sbjct: 149 NHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAM-------- 200
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEMEKANELFN 226
R +FDE+P VRD+++WN ++ GY + G M A E+F+
Sbjct: 201 -----------------------RRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFD 237
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
E+P RD +SW+ ++ GYV + AL +F M G RP+ +++ L+A A LG LE
Sbjct: 238 EMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEH 297
Query: 287 GKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345
GK VH + SG+ ++ G AL+DMYAKCG + A EVF GMR RDV W+ +I GL
Sbjct: 298 GKFVHNVV--QRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGL 355
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
A HG +++ +F + PT +TFVGVL CS +G V EG++YFKL+ ++Y IEP
Sbjct: 356 AAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPE 415
Query: 406 IRHYG---------------------------------------VHGDVELGRLANKRLL 426
+ HYG HG V+LG +L+
Sbjct: 416 MEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLI 475
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ SG YVLLS IYA +W+ V +VRKLM K G SL+EA K
Sbjct: 476 ELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGK 527
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/385 (22%), Positives = 162/385 (42%), Gaps = 45/385 (11%)
Query: 26 ALVTINGFNSDSSALREL---------------IYSGSVVIPGAINYAHKMFVKITEPDT 70
ALV G + D A+R + + +G V G + A ++F ++ D
Sbjct: 186 ALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAG-YVRAGMMTVAREVFDEMPVRDE 244
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++T++ G + + A+ ++ M + ++PN+ L A RL G VH
Sbjct: 245 ISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNV 304
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+ + G V +L+ +A CG + A +FDG + DV AW+++ G A G A
Sbjct: 305 VQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDA 364
Query: 191 RSLFDEMPVRDLVSWNV----MITGYAKQGEMEKANELFNEVPKR-----DVVSWNAMIS 241
LF+ L NV ++ G ++ G + + F + ++ ++ + M+
Sbjct: 365 VELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVD 424
Query: 242 GYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT--- 298
G+ +A+E+ E M PD V ++L++C G +++G V L+++
Sbjct: 425 LLGRAGLVPEAIELIEGMHIA---PDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTH 481
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV---STWSTLIGGLAFHGF----- 350
SG +L G +YAK + EV M R + WS + H F
Sbjct: 482 SGYYVLLSG-----IYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDT 536
Query: 351 -AEESIAMFREMQRLKVRPTEITFV 374
++S+ ++ + + R TE +V
Sbjct: 537 YHKDSVQIYDTLDMINKRLTEAGYV 561
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 228/462 (49%), Gaps = 76/462 (16%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV--L 112
I+ A ++F +I E D + T+I G + DA+ Y QM + N + V +
Sbjct: 226 IDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVG-EVGANDYEVLLVDLM 284
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC R G +H I+K GF+ + FV+ +L++F+ CG + A + F K
Sbjct: 285 KACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDK---- 340
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
S TA SWN ++ + G + +A ELF+++P+RD
Sbjct: 341 ---SHTA------------------------SWNALLAALLRNGLIREARELFDDMPERD 373
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW+ MISGYV G + AL++F M + P++VT+ S L+A AD G L+ GK +H
Sbjct: 374 TVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHD 433
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHGF 350
+++ + L + LIDMYAKCGSI A++ F + D+ VS W+ +I LA HG+
Sbjct: 434 YIMNRPVQLTDNL-SSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGY 492
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
A S+ +F ++QR ++P ITF+GVL AC HAG V +GK YF+ M EY I+P I+HYG
Sbjct: 493 AHMSLDLFSQLQRTSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYG 552
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
G+V LG A + L + +
Sbjct: 553 CMVDLLGRAGYLEEAEQLVSMMPMKPDVVIWGSILSASRAQGNVALGERAAEELAKLDQT 612
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ LSNIYA G W V VRK + D+++++ G S I
Sbjct: 613 HGASKIALSNIYADAGHWINVSVVRKELQDANLERLTGRSGI 654
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/415 (25%), Positives = 186/415 (44%), Gaps = 39/415 (9%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP--DT 70
K+ LR +Q+ AL +G + + +R + S +P ++ A ++F + P D
Sbjct: 17 KRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDETPPPLRDA 76
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
N+++ ++ A L +M + I + +++ ++ + R + V
Sbjct: 77 TARNSVLAALTRAGYLDRAQGLLEEMPR--IHRDAVSYTTLVTSFARAGHAARAVAVFRS 134
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVL--FDGDAKMD--VVAWSSLTAGYARRGE 186
++ N I A CG T ++ F +D V+ ++L YA E
Sbjct: 135 MLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVLE 194
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
L AR+LFD M R+ V+WNVM+ GY K ++ A E+F +P+RD VSW +I GY+
Sbjct: 195 LCSARALFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICA 254
Query: 247 GMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL---------- 295
+ A++ + +M VG +V ++ L+ ACA + G+++H +L
Sbjct: 255 DLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFV 314
Query: 296 -----------------DMTSGVAKVLHG---NALIDMYAKCGSIERAIEVFLGMRDRDV 335
MT ++ H NAL+ + G I A E+F M +RD
Sbjct: 315 QATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDT 374
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+WST+I G G ++ ++ +F M + P E+T L A + +G +++GK
Sbjct: 375 VSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGK 429
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 228/462 (49%), Gaps = 76/462 (16%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV--L 112
I+ A ++F +I E D + T+I G + DA+ Y QM + N + V +
Sbjct: 226 IDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVG-EVGANDYEVLLVDLM 284
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC R G +H I+K GF+ + FV+ +L++F+ CG + A + F K
Sbjct: 285 KACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDK---- 340
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
S TA SWN ++ + G + +A ELF+++P+RD
Sbjct: 341 ---SHTA------------------------SWNALLAALLRNGLIREARELFDDMPERD 373
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
VSW+ MISGYV G + AL++F M + P++VT+ S L+A AD G L+ GK +H
Sbjct: 374 TVSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHD 433
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHGF 350
+++ + L + LIDMYAKCGSI A++ F + D+ VS W+ +I LA HG+
Sbjct: 434 YIMNRPVQLTDNL-SSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGY 492
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
A S+ +F ++QR ++P ITF+GVL AC HAG V +GK YF+ M EY I+P I+HYG
Sbjct: 493 AHMSLDLFSQLQRTSIKPNSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYG 552
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
G+V LG A + L + +
Sbjct: 553 CMVDLLGRAGYLEEAEQLVSMMPMKPDVVIWGSILSASRAQGNVALGERAAEELAKLDQT 612
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ LSNIYA G W V VRK + D+++++ G S I
Sbjct: 613 HGASKIALSNIYADAGHWINVSVVRKELQDANLERLTGRSGI 654
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/415 (25%), Positives = 186/415 (44%), Gaps = 39/415 (9%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP--DT 70
K+ LR +Q+ AL +G + + +R + S +P ++ A ++F + P D
Sbjct: 17 KRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDETPPPLRDA 76
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
N+++ ++ A L +M + I + +++ ++ + R + V
Sbjct: 77 TARNSVLAALTRAGYLDRAQGLLEEMPR--IHRDAVSYTTLVTSFARAGHAARAVAVFRS 134
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVL--FDGDAKMD--VVAWSSLTAGYARRGE 186
++ N I A CG T ++ F +D V+ ++L YA E
Sbjct: 135 MLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVLE 194
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
L AR+LFD M R+ V+WNVM+ GY K ++ A E+F +P+RD VSW +I GY+
Sbjct: 195 LCSARALFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICA 254
Query: 247 GMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL---------- 295
+ A++ + +M VG +V ++ L+ ACA + G+++H +L
Sbjct: 255 DLISDAMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFV 314
Query: 296 -----------------DMTSGVAKVLHG---NALIDMYAKCGSIERAIEVFLGMRDRDV 335
MT ++ H NAL+ + G I A E+F M +RD
Sbjct: 315 QATLVHFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDT 374
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+WST+I G G ++ ++ +F M + P E+T L A + +G +++GK
Sbjct: 375 VSWSTMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGK 429
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/467 (30%), Positives = 224/467 (47%), Gaps = 89/467 (19%)
Query: 52 PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV 111
PG YA ++F KI +P+T YN ++ DA + M P K S+
Sbjct: 86 PGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSM------PLKDVASW- 138
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
N++I A G + A LF + +
Sbjct: 139 --------------------------------NTMISALAQVGLMGEARRLFSAMPEKNC 166
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
V+WS++ +GY G+L A F P+R +++W MITGY K G +E A LF E+ R
Sbjct: 167 VSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMR 226
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
+V+WNAMI+GYV G + L +F M G +P+ +++ S+L C++L L++GK+VH
Sbjct: 227 TLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVH 286
Query: 292 -----CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
C L T+ G +L+ MY+KCG ++ A E+F+ + +DV W+ +I G A
Sbjct: 287 QLVCKCPLSSDTTA------GTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYA 340
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406
HG ++++ +F EM++ ++P ITFV VL+AC+HAG V+ G +YF MR ++ IE
Sbjct: 341 QHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKP 400
Query: 407 RHYG---------------------------------------VHGDVELGRLANKRLLN 427
HY +H ++ L A K LL
Sbjct: 401 EHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLE 460
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ + YV L+N+YA++ W+ V +R+ M D+++ K PG S IE
Sbjct: 461 LDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIE 507
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 93/260 (35%)
Query: 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA-DLGDL 284
+E +V++ N +I+ YV CG A+ +FE+M+ VT S+L A A G
Sbjct: 34 HEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKV----KSTVTWNSILAAFAKKPGHF 89
Query: 285 EVGKKV---------------------HCTLLD------------------MTSGVAKV- 304
E +++ H + D M S +A+V
Sbjct: 90 EYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVG 149
Query: 305 -----------------LHGNALIDMYAKCGSIERAIEVFLG------------------ 329
+ +A++ Y CG ++ A+E F
Sbjct: 150 LMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMK 209
Query: 330 -------------MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
M R + TW+ +I G +G AE+ + +FR M V+P ++ V
Sbjct: 210 FGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSV 269
Query: 377 LVACSHAGKVEEGKKYFKLM 396
L+ CS+ ++ GK+ +L+
Sbjct: 270 LLGCSNLSALQLGKQVHQLV 289
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 150/494 (30%), Positives = 240/494 (48%), Gaps = 79/494 (15%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKAC 115
A K+F ++ E DT ++NT+I G +++ ++++ ++ + E C+ + + T +L A
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT-RLDTTTLLDILPAV 231
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
L +G +H K G + +V I ++ CG + S LF K D+VA++
Sbjct: 232 AELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYN 291
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDL------------VSWNVMI-------------- 209
++ GY GE ++ SLF E+ + VS ++M+
Sbjct: 292 AMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFL 351
Query: 210 ----------TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
T Y+K E+E A +LF+E P++ + SWNAMISGY G+ + A+ +F EM
Sbjct: 352 SHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREM 411
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
+ P+ VT+ +L+ACA LG L +GK VH L+ T + + ALI MYAKCGS
Sbjct: 412 QKSEFSPNPVTITCILSACAQLGALSLGKWVH-DLVRSTDFESSIYVSTALIGMYAKCGS 470
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I A +F M ++ TW+T+I G HG +E++ +F EM + PT +TF+ VL A
Sbjct: 471 IAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYA 530
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSHAG V+EG + F M Y EP+++HY
Sbjct: 531 CSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSS 590
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+H D L R +++L + D G +VLLSNI+++ + + VR+
Sbjct: 591 VWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAK 650
Query: 461 DSDIKKQPGCSLIE 474
+ K PG +LIE
Sbjct: 651 KRKLAKAPGYTLIE 664
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 212/429 (49%), Gaps = 49/429 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
+K+ T++ L Q A + ++GF +D S L +L S + GAI YA +F+ + PD
Sbjct: 26 FFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDL--GAIYYARDIFLSVQRPDV 83
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F++N ++RG + +++P ++ ++ + K + +KPN T++F + A + G +HG
Sbjct: 84 FLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHG 143
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL-- 187
+ V G + + ++++ + + A +FD + D + W+++ +GY R+ E+
Sbjct: 144 QAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY-RKNEMYV 202
Query: 188 ---SMARSLFDE--------------------------MPVRDLV------SWNVMITG- 211
+ R L +E M + L S + ++TG
Sbjct: 203 ESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF 262
Query: 212 ---YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
Y+K G+++ + LF E K D+V++NAMI GY G + +L +F+E+ G R
Sbjct: 263 ISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRS 322
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
T++SL+ G L + +H L ++ ++ AL +Y+K IE A ++F
Sbjct: 323 STLVSLVPVS---GHLMLIYAIHGYCLK-SNFLSHASVSTALTTVYSKLNEIESARKLFD 378
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
++ + +W+ +I G +G E++I++FREMQ+ + P +T +L AC+ G +
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438
Query: 389 GKKYFKLMR 397
GK L+R
Sbjct: 439 GKWVHDLVR 447
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 12/252 (4%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I A K+F + E +N +I G Q+ DA+ L+ +M+K PN T + +L A
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSA 429
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C +L ++G VH + FE + +V +LI +A CG + A LFD K + V W
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTW 489
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVPK 230
+++ +GY G+ A ++F EM + V++ ++ + G +++ +E+FN +
Sbjct: 490 NTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIH 549
Query: 231 R-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
R V + M+ G ++AL+ E M P +LL AC D
Sbjct: 550 RYGFEPSVKHYACMVDILGRAGHLQRALQFIEAM---SIEPGSSVWETLLGACRIHKDTN 606
Query: 286 VGKKVHCTLLDM 297
+ + V L ++
Sbjct: 607 LARTVSEKLFEL 618
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 15 CTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
C L L K + LV F S LI G G+I A ++F +T+ +
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFESSIYVSTALI--GMYAKCGSIAEARRLFDLMTKKNEV 487
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-LYRNMGFCVHGK 130
+NT+I G +A+ ++ +M I P TF VL AC+ L + +
Sbjct: 488 TWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSM 547
Query: 131 IVKYGFE 137
I +YGFE
Sbjct: 548 IHRYGFE 554
>gi|449480383|ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 561
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 162/522 (31%), Positives = 260/522 (49%), Gaps = 75/522 (14%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KCTNL +KQ+ A + + + D + +LI + S+ + A F ++ P+ +Y
Sbjct: 55 KCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLC--RQMLLATNAFNQVQYPNVHLY 112
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
NT+IR + + P A + M++ + FTF F+LK CT ++ + VH +I K
Sbjct: 113 NTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEK 172
Query: 134 YGFEFNRFVRNSLIYFHANCGD--LNTASVLF-DGDAKMDVVAWSSLTAGYARRGELSMA 190
+GF + FV NSLI ++ CG ++ A LF A+ DVV+W+S+ +G A+ G A
Sbjct: 173 FGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEA 232
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC---- 246
R +FDEMP +D +SWN M+ GY K G+M+ A +LF+E+P+R+VVSW+ M+ GY
Sbjct: 233 RKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDME 292
Query: 247 ---------------------------GMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
G+ ++A+ +F++M + D+ T++S+L ACA
Sbjct: 293 MARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACA 352
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM-RD----RD 334
+ G L +G+K+H ++ + + NAL+DMYAKCG I+ I F M RD +
Sbjct: 353 ESGLLGLGEKIHASIKNNNFKCTTEI-SNALVDMYAKCGLIDDGIRYFSTMERDYTLVPE 411
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK 394
V + ++ L G EE+I + R M + P I + +L AC
Sbjct: 412 VEHYGCMVDLLGRKGRLEEAIRLIRNM---PMAPNAIIWGTLLGACR------------- 455
Query: 395 LMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
+H VEL R L+ + +SG++ +LSNIYA+ G+WN V
Sbjct: 456 ----------------MHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVAN 499
Query: 455 VRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496
R M KK G S IE +++ +F+ + P S N+
Sbjct: 500 TRLRMRSIGTKKPSGASSIEVNNEVHEFTVFD-RSHPKSDNI 540
>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 238/461 (51%), Gaps = 41/461 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G I +A ++F ++ E + + +I G + L+ +M K +K N T + +
Sbjct: 204 GKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVM 263
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
+AC+ G +HG + + GFEF+ F+ N++I + + A +FD + DV
Sbjct: 264 FEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDV 323
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
V+W++L AGY + E+ LF++ +D++SW MITG++ +G+M K+ ELF +PK+
Sbjct: 324 VSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ 383
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
D ++W A+ISG+V G ++A+ F EM RP+ +T+ S+L+A A L L G ++H
Sbjct: 384 DDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIH 443
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
++ M + N+L+ MY KCG++ ++F + ++ +++++I G A +GF
Sbjct: 444 TLVVKMGMEFDLSIQ-NSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFG 502
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
EE++ +F +M +P EITF+GVL AC+H G +E+G YFK M+ Y IEP HY
Sbjct: 503 EEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYAC 562
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+H +++ +LA +++ + D
Sbjct: 563 IVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFKLEPDN 622
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ Y +LS +Y+S G E+VR +KK G S I
Sbjct: 623 AAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWI 663
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 6/234 (2%)
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
D V ++L +GY + G L A +F+ M RD++SW+ M+ GY K+G++ A ELF +P
Sbjct: 158 DPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMP 217
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGK 288
+R+VV+W AMI G++ G + +F MR G + + T+ + AC++ G+ + G
Sbjct: 218 ERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGI 277
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
++H L+ V GNA+I MY + + A ++F M +DV +W+ LI G +
Sbjct: 278 QMH-GLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQN 336
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
EE +F + Q+ V I++ ++ S+ GK+ + + F++M + +I
Sbjct: 337 DEVEEGYVLFEKTQQKDV----ISWTTMITGFSNKGKMGKSIELFRMMPKQDDI 386
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 14/251 (5%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
+S I H GDL A +F + ++W+++ Y G ++ AR +F++MP R
Sbjct: 35 HSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTA 94
Query: 204 SWNVMITGYAKQGEM--EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
S+N MIT Y + M +A++LF E+ +R+ +S+ AMI+G GM A E++ E +
Sbjct: 95 SYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELYLE--T 152
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
E D V +L++ G L+VG+ T + G V+ ++++D Y K G I
Sbjct: 153 PVEWRDPVCSNALIS-----GYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIG 207
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR---LKVRPTEITFVGVLV 378
A E+F M +R+V TW+ +I G G E +F M++ +KV PT +T +
Sbjct: 208 HARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTV--MFE 265
Query: 379 ACSHAGKVEEG 389
ACS G+ +EG
Sbjct: 266 ACSEFGEYKEG 276
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 127/252 (50%), Gaps = 14/252 (5%)
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQ 215
LN+++ + K V S +T + R G+L A S+F MP ++ +SW M+T Y +
Sbjct: 17 LNSSNTQGNRTTKFLVHCHSQITK-HGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYEN 75
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCG--MNKQALEMFEEMRSVGERPDDVTMLS 273
G + KA ++F ++P+R S+NAMI+ Y M +A ++F EMR ER + ++ +
Sbjct: 76 GHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMR---ER-NSISYAA 131
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333
++T A G ++ ++++ L+ + NALI Y K G +E A +F GM +R
Sbjct: 132 MITGLARAGMVDNAEELY---LETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGER 188
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
DV +WS+++ G G + +F M V +T+ ++ G E G F
Sbjct: 189 DVISWSSMVDGYCKKGKIGHARELFERMPERNV----VTWTAMIDGHMKMGCYEVGFGLF 244
Query: 394 KLMRDEYNIEPN 405
MR E ++ N
Sbjct: 245 LRMRKEGFVKVN 256
>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial [Vitis vinifera]
Length = 744
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 238/461 (51%), Gaps = 41/461 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G I +A ++F ++ E + + +I G + L+ +M K +K N T + +
Sbjct: 283 GKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVM 342
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
+AC+ G +HG + + GFEF+ F+ N++I + + A +FD + DV
Sbjct: 343 FEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDV 402
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
V+W++L AGY + E+ LF++ +D++SW MITG++ +G+M K+ ELF +PK+
Sbjct: 403 VSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ 462
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
D ++W A+ISG+V G ++A+ F EM RP+ +T+ S+L+A A L L G ++H
Sbjct: 463 DDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIH 522
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
++ M + N+L+ MY KCG++ ++F + ++ +++++I G A +GF
Sbjct: 523 TLVVKMGMEFDLSIQ-NSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFG 581
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG- 410
EE++ +F +M +P EITF+GVL AC+H G +E+G YFK M+ Y IEP HY
Sbjct: 582 EEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYAC 641
Query: 411 --------------------------------------VHGDVELGRLANKRLLNMRKDE 432
+H +++ +LA +++ + D
Sbjct: 642 IVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFKLEPDN 701
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ Y +LS +Y+S G E+VR +KK G S I
Sbjct: 702 AAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWI 742
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 6/234 (2%)
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
D V ++L +GY + G L A +F+ M RD++SW+ M+ GY K+G++ A ELF +P
Sbjct: 237 DPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMP 296
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGK 288
+R+VV+W AMI G++ G + +F MR G + + T+ + AC++ G+ + G
Sbjct: 297 ERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGI 356
Query: 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFH 348
++H L+ V GNA+I MY + + A ++F M +DV +W+ LI G +
Sbjct: 357 QMH-GLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQN 415
Query: 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
EE +F + Q+ V I++ ++ S+ GK+ + + F++M + +I
Sbjct: 416 DEVEEGYVLFEKTQQKDV----ISWTTMITGFSNKGKMGKSIELFRMMPKQDDI 465
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 14/251 (5%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
+S I H GDL A +F + ++W+++ Y G ++ AR +F++MP R
Sbjct: 114 HSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTA 173
Query: 204 SWNVMITGYAKQGEM--EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
S+N MIT Y + M +A++LF E+ +R+ +S+ AMI+G GM A E++ E +
Sbjct: 174 SYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELYLE--T 231
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
E D V +L++ G L+VG+ T + G V+ ++++D Y K G I
Sbjct: 232 PVEWRDPVCSNALIS-----GYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIG 286
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR---LKVRPTEITFVGVLV 378
A E+F M +R+V TW+ +I G G E +F M++ +KV PT +T +
Sbjct: 287 HARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTV--MFE 344
Query: 379 ACSHAGKVEEG 389
ACS G+ +EG
Sbjct: 345 ACSEFGEYKEG 355
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 14/267 (5%)
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
+ + + + LN+++ + K V S +T + R G+L A S+F MP +
Sbjct: 81 LAKPTTLLLQKHLSRLNSSNTQGNRTTKFLVHCHSQITK-HGRNGDLKEAESIFSRMPHK 139
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG--MNKQALEMFEE 258
+ +SW M+T Y + G + KA ++F ++P+R S+NAMI+ Y M +A ++F E
Sbjct: 140 NAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAE 199
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
MR ER + ++ +++T A G ++ ++++ L+ + NALI Y K G
Sbjct: 200 MR---ER-NSISYAAMITGLARAGMVDNAEELY---LETPVEWRDPVCSNALISGYLKVG 252
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378
+E A +F GM +RDV +WS+++ G G + +F M V +T+ ++
Sbjct: 253 RLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNV----VTWTAMID 308
Query: 379 ACSHAGKVEEGKKYFKLMRDEYNIEPN 405
G E G F MR E ++ N
Sbjct: 309 GHMKMGCYEVGFGLFLRMRKEGFVKVN 335
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 226/463 (48%), Gaps = 74/463 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F + D F + +I ++ +A+ +++ M + ++ V+
Sbjct: 214 GMVEEARGVFDEAECRDIFTWTAMISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVV 273
Query: 113 KACTRL-LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
AC + + RN C HG +++ G ++N LI+ ++ C +DV
Sbjct: 274 AACAQSEVIRNGELC-HGLVIRAGLCSLLNIQNVLIHMYSCC---------------LDV 317
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
VA AR LFD D SWN MI GY K G +E A LF+ +P +
Sbjct: 318 VA----------------ARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDK 361
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
D VSW+ MISG V + AL +F+ MR+ G RPD+VT++S+++AC +L LE GK VH
Sbjct: 362 DNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVH 421
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
+ + VL G +LIDMY KCG +E A++VF M ++ W+ +I GLA +G
Sbjct: 422 DYVRQNKCYITLVL-GTSLIDMYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLV 480
Query: 352 EESIAMFREMQRLKVR-PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
+S+ +F EM+ P EITF GVL AC HAG VEEG+ +FKLM+ +Y I PNIRHYG
Sbjct: 481 TKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRHYG 540
Query: 411 V---------------------------------------HGDVELGRLANKRLLNMRKD 431
HG+ E+G ++L+N+
Sbjct: 541 CMVDLLGRAGYVKEAEDLIESMPMSPDVPAWGALLGACWKHGENEVGERVGRKLVNLDPR 600
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
G +LSNIYA G W V +R M + K G S++E
Sbjct: 601 HDGFQTMLSNIYAKEGMWQSVNDLRDSMKQRHVPKVSGYSVVE 643
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/416 (27%), Positives = 207/416 (49%), Gaps = 35/416 (8%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIY--SGSVVIPGAINYAHKMFVKITEPDTF 71
+C+++R L QI +G +D+ A L+ S + ++P I+++ ++ + P+ F
Sbjct: 13 RCSSVRHLLQIHGQFIASGLLADAFAASRLLLFTSATRLLPFPIHHSFRLLRLVRCPNAF 72
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
NT+++ + + P + LYT + P+ +T + AC + G V
Sbjct: 73 SCNTLLKAALLAGMPHLCLPLYTSLPA---SPDTYTHPILAAACAARRDVSEGRQVQSHA 129
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+++GF + ++RN+L++ ++ CG L A +FD D V+W+++ A Y G++ A
Sbjct: 130 IRHGFGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAV 189
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+F MP R+ + + M++ + ++G +E+A +F+E RD+ +W AMIS + M +
Sbjct: 190 GVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDMFAE 249
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH--------CTLLD------- 296
AL MF MR D+ M+S++ ACA + G+ H C+LL+
Sbjct: 250 ALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIH 309
Query: 297 MTSGVAKVLHG---------------NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
M S V+ N++I Y K G +E A+ +F M D+D +WST+
Sbjct: 310 MYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTM 369
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
I G + + ++ +F M+ VRP E+T V V+ AC++ +E+GK +R
Sbjct: 370 ISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVR 425
>gi|224075377|ref|XP_002304609.1| predicted protein [Populus trichocarpa]
gi|222842041|gb|EEE79588.1| predicted protein [Populus trichocarpa]
Length = 431
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 232/445 (52%), Gaps = 78/445 (17%)
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
YNT + + +P A+ LYT M + SI + F+ F LK+CT L + +H I+
Sbjct: 21 YNTWVLAIKNASSPHKALQLYTHMHRQSIPFDTFSILFTLKSCTHLKNLTIIHHLHSHII 80
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K GF + +V L++ +A + FD A
Sbjct: 81 KLGFNTHVYVSTCLLHAYA--------VMSFD------------------------QACD 108
Query: 193 LFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
LFDEMP R++V+WN MITGY++ G + KA LF +P RD SW+AMI+ Y+ G Q
Sbjct: 109 LFDEMPQRNIVTWNTMITGYSRSGSINKARSLFEAMPVRDAASWSAMITCYINNGFRDQG 168
Query: 253 LEMFEEMRS-VGERPDDVTMLSLLTACADLGDLEV--GKKVHCTLLDMTSGVAKVLHGNA 309
L F+EM + +PD VT+ S+L+ CA +G L + GK VH ++ V G
Sbjct: 169 LSFFQEMMANENPKPDQVTVGSVLSGCAHMGSLGLLAGKSVHGFVVK-NGWELNVDIGTL 227
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
L+DMYAKCG + A+ VF+ M++R+VSTW+ LI G A HGF +E +++F+ MQ VRP
Sbjct: 228 LVDMYAKCGFFKNAVWVFVLMQERNVSTWTALICGAAQHGFCQEVLSLFKMMQEAGVRPN 287
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
E+TF G+L AC+ G +EEG+KYFK+++ E +EP I+HYG
Sbjct: 288 EMTFTGILNACARKGLIEEGRKYFKMIK-ETGLEPRIQHYGCMVDMFGKAGLLEEAYEVI 346
Query: 411 --------------------VHGDVELG-RLANKRLLNMR-KDESGDYVLLSNIYASRGE 448
+H ++ R+ + L +++ +++ G Y L+S++Y +
Sbjct: 347 KEMEFEPNIVIWGSFLSACKMHKQFDIADRVIGQVLRDIKPENDGGIYSLVSDLYVLNKK 406
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLI 473
W+ E+VR L+ + +++K G S I
Sbjct: 407 WDDAERVRNLVLNQNVRKARGSSCI 431
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 56/326 (17%)
Query: 13 KKCTNLRTLKQIQALVTIN---GFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
K CT+L+ L I L + GFN+ L+++ +V+ + + A +F ++ + +
Sbjct: 61 KSCTHLKNLTIIHHLHSHIIKLGFNTHVYVSTCLLHAYAVM---SFDQACDLFDEMPQRN 117
Query: 70 TFMYNTIIRGSAQSQN-----------PLDAVFLYTQMEKCSI----------------- 101
+NT+I G ++S + P+ ++ M C I
Sbjct: 118 IVTWNTMITGYSRSGSINKARSLFEAMPVRDAASWSAMITCYINNGFRDQGLSFFQEMMA 177
Query: 102 ----KPNKFTFSFVLKACTRL--LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155
KP++ T VL C + L G VHG +VK G+E N + L+ +A CG
Sbjct: 178 NENPKPDQVTVGSVLSGCAHMGSLGLLAGKSVHGFVVKNGWELNVDIGTLLVDMYAKCGF 237
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF---DEMPVR-DLVSWNVMITG 211
A +F + +V W++L G A+ G SLF E VR + +++ ++
Sbjct: 238 FKNAVWVFVLMQERNVSTWTALICGAAQHGFCQEVLSLFKMMQEAGVRPNEMTFTGILNA 297
Query: 212 YAKQGEMEKANELFNEVPKRD----VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
A++G +E+ + F + + + + M+ + G+ ++A E+ +EM P+
Sbjct: 298 CARKGLIEEGRKYFKMIKETGLEPRIQHYGCMVDMFGKAGLLEEAYEVIKEMEF---EPN 354
Query: 268 DVTMLSLLTACA-----DLGDLEVGK 288
V S L+AC D+ D +G+
Sbjct: 355 IVIWGSFLSACKMHKQFDIADRVIGQ 380
>gi|354805181|gb|AER41600.1| CRR4 [Oryza glaberrima]
Length = 540
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 199/347 (57%), Gaps = 14/347 (4%)
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E N N+++ A GD+ TA +FD + V+W+ + +GYA G++ ARS+FD
Sbjct: 111 ERNVVSWNTVVAGFARMGDMVTAWAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR 170
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
M +D+VSW M++ YAK G+++ ANELF+ +P +++VSWNAMI+GY +AL F
Sbjct: 171 MDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 230
Query: 257 EEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGNALI 311
+ M G RPD+ T++S+++ACA LG +E +C + G + V GNALI
Sbjct: 231 QLMMLEGRFRPDEATLVSVVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALI 285
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DM+AKCG + RA +F M R + TW+T+I G AF+G +++ ++ M R V+ +
Sbjct: 286 DMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDT 345
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----VHGDVELGRLANKRLLN 427
F+ L AC+H G ++EG F M + YNI+P + HYG + G EL +K++
Sbjct: 346 VFIAALAACAHGGLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITE 405
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ S VL+SN A G W+ V R M + I+K PG S I+
Sbjct: 406 LEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSIQ 452
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 150/301 (49%), Gaps = 50/301 (16%)
Query: 96 MEKCSIKPNKFTFSFVLKACTRL-LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCG 154
M + P FTF+F+L+AC L L R G C HG+IV+ GF + FV+N+L+ + CG
Sbjct: 1 MRAQGVPPYGFTFTFLLRACALLGLPRPCG-CFHGQIVRCGFGSDVFVQNALMDVYHRCG 59
Query: 155 DLN-------TASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV 207
A +FD DVV+W+S+ Y G+ + A F+ MP R++VSWN
Sbjct: 60 GGGGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNT 119
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
++ G+A+ G+M A +F+ +P R+ VSWN MISGY G + A +F+ M ++ D
Sbjct: 120 VVAGFARMGDMVTAWAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRM----DQKD 175
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
V+ ++++A A +GDL+ A E+F
Sbjct: 176 VVSWTAMVSAYAKIGDLDT------------------------------------ANELF 199
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ-RLKVRPTEITFVGVLVACSHAGKV 386
M +++ +W+ +I G + +E++ F+ M + RP E T V V+ AC+ G V
Sbjct: 200 DHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSV 259
Query: 387 E 387
E
Sbjct: 260 E 260
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
MR+ G P T LL ACA LG H ++ G + V NAL+D+Y +CG
Sbjct: 1 MRAQGVPPYGFTFTFLLRACALLGLPRPCGCFHGQIVRCGFG-SDVFVQNALMDVYHRCG 59
Query: 319 SIER-------AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
A +VF M DRDV +W++++G G A ++ F M V +
Sbjct: 60 GGGGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNV----V 115
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGRLANKRLLNMR 429
++ V+ + G + F M + N I Y GDVE R R M
Sbjct: 116 SWNTVVAGFARMGDMVTAWAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR---MD 172
Query: 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
+ + + + + YA G+ ++ +L D +K
Sbjct: 173 QKDVVSWTAMVSAYAKIGD---LDTANELFDHMPVK 205
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 161/520 (30%), Positives = 242/520 (46%), Gaps = 107/520 (20%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKM 61
R RL + +L Q A + +G +++S L L + + P ++
Sbjct: 19 RAAEQHCLRLLAASSTPTSLLQSVAFLLKSGLHANSLVLTRLFAASASAAPALLDPLVAA 78
Query: 62 FVKITEP-DTFMYNTIIRGSAQSQNP---LDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
++ + P D F+ NT+IR A S L A + M + ++ PNKFTF F+LKAC
Sbjct: 79 LLRPSVPLDAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAA 138
Query: 118 LL-YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
L ++G H +K+GF +++V N+LI+ + +C F G
Sbjct: 139 LPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY-SC---------FGG----------- 177
Query: 177 LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW 236
G L AR++FD MP K V+W
Sbjct: 178 --------GFLGDARNVFDRMP-------------------------------KESAVTW 198
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
+AMI GYV G++ A+E+F EM++ G + D+VT++ +L A DLG LE+ + V
Sbjct: 199 SAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVR--RFV 256
Query: 297 MTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
G+ K V NALID AKCG ++ A+ VF GM+ R V +W+++I LA G +E++
Sbjct: 257 EREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAV 316
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
+F EM+ V P ++ F+GVL ACSHAG V+EG YF M+ EY IEP I HYG
Sbjct: 317 RVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDM 376
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
HG +ELG + LL+ +Y
Sbjct: 377 FGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANY 436
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
++LSN++A W ++R+ M IKK PGCS++E D
Sbjct: 437 IMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELD 476
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 155/548 (28%), Positives = 255/548 (46%), Gaps = 84/548 (15%)
Query: 13 KKCTNLRTLKQ---IQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
+ C +L+ L+ I +V G + D L+ V I A +F K+ E D
Sbjct: 38 RACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALV--DMYVKCREIEDARFLFDKMQERD 95
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+ +I G A+ +++ L+ +M + + P+K V+ AC +L + +
Sbjct: 96 LVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDD 155
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
I + F+ + + ++I +A CG + +A +FD + +V++WS++ A Y G+
Sbjct: 156 YIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 215
Query: 190 ARSLFDEM-----------------PVRDLVSWNV----------------------MIT 210
A LF M DL + + ++
Sbjct: 216 ALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVD 275
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
Y K E+E A LF+++P+RD+V+W MI GY CG ++L +F++MR G PD V
Sbjct: 276 MYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVA 335
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
M++++ ACA LG + + + + V+ G A+IDM+AKCG +E A E+F M
Sbjct: 336 MVTVVFACAKLGAMHKARTID-DYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRM 394
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+++V +WS +I +HG +++ +F M R + P +IT V +L ACSHAG VEEG
Sbjct: 395 EEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGL 454
Query: 391 KYFKLMRDEYNIEPNIRHYG---------------------------------------V 411
++F LM ++Y++ +++HY
Sbjct: 455 RFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRT 514
Query: 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCS 471
H DV L A LL ++ G Y+LLSNIYA+ G W V K R LM +KK PG +
Sbjct: 515 HKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWT 574
Query: 472 LIEADDKA 479
IE D+K+
Sbjct: 575 WIEVDNKS 582
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 186/358 (51%), Gaps = 48/358 (13%)
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
++ G A+ + ++ + ++ +C +P+ +T FV++AC L MG +H + K+G
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFD 195
+ + FV +L+ + C ++ A LFD + D+V W+ + GYA G+ + + LF+
Sbjct: 61 LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120
Query: 196 EM------PVR---------------------------------DLVSWNVMITGYAKQG 216
+M P + D++ MI YAK G
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
+E A E+F+ + +++V+SW+AMI+ Y G ++AL++F M S G PD +T+ SLL
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240
Query: 277 ACADLGDLEVGKKVHCTL----LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332
AC+DL +L++G+ +H + LD+ V AL+DMY KC IE A +F M +
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDHFVCA-----ALVDMYGKCREIEDARFLFDKMPE 295
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
RD+ TW+ +IGG A G A ES+ +F +M+ V P ++ V V+ AC+ G + + +
Sbjct: 296 RDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKAR 353
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 150/425 (35%), Positives = 214/425 (50%), Gaps = 87/425 (20%)
Query: 104 NKFTFSFVLK-----------ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHAN 152
N +F+F+L A + R MG VH VK G + +VRN+ I+F+
Sbjct: 120 NPHSFTFLLASLSNHLDTEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGV 179
Query: 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITG 211
CGD+ + R +FDE+P VRD+V+WN ++ G
Sbjct: 180 CGDV-------------------------------AAMRKVFDELPIVRDVVTWNAVLAG 208
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
Y + G + A E+F+ +P RD VSW+ +I GYV G + AL +F+ M + G + ++ +
Sbjct: 209 YVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAI 268
Query: 272 LSLLTACADLGDLEVGKKVHCTL--LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
++ L+A A LG LE GK VH + + MT V G ALIDMY+KCGS+ A EVF
Sbjct: 269 VTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNL---GAALIDMYSKCGSVAAAKEVFDA 325
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M RDV W+++I GLA HG +++ +F + PT ITFVGVL ACS G V+EG
Sbjct: 326 MPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEG 385
Query: 390 KKYFKLMRDEYNIEPNIRHYGV-------------------------------------- 411
++YFKLM ++Y+IE + HYG
Sbjct: 386 RRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACK 445
Query: 412 -HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470
HG V+LG +L+ + G YVLL++IYA +W+ V KVRKLM + K G
Sbjct: 446 RHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGW 505
Query: 471 SLIEA 475
SL+EA
Sbjct: 506 SLMEA 510
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 12/254 (4%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F + D ++T+I G + P A+ ++ M +K N+ L
Sbjct: 213 GMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTAL 272
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A +L G VH + + G + + +LI ++ CG + A +FD + DV
Sbjct: 273 SAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVF 332
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELFNEV 228
AW+S+ G A G A LF++ ++ G ++ G +++ F +
Sbjct: 333 AWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLM 392
Query: 229 P-KRDVVS----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
K D+ S + M+ G+ ++A+E+ E MR PD V ++L+AC G
Sbjct: 393 AEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRI---PPDPVLWGTILSACKRHGL 449
Query: 284 LEVGKKVHCTLLDM 297
+++G V L+++
Sbjct: 450 VDLGITVGNKLIEL 463
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 217/439 (49%), Gaps = 72/439 (16%)
Query: 54 AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113
+ YA +F I EP+ ++NT+ RG A + + + A+ LY M + PN ++F F+LK
Sbjct: 22 GLPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCMISLGLLPNSYSFPFLLK 81
Query: 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK----- 168
+C + G +HG +VK G++ + +V SLI +A G L A +FD +
Sbjct: 82 SCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 141
Query: 169 --------------------------MDVVAWSSLTAGYARRGELSMARSLFDEM----- 197
D+V+W+++ +GY A L+ EM
Sbjct: 142 YTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNV 201
Query: 198 ------------------------PVRDLVS----------WNVMITGYAKQGEMEKANE 223
V L+ N ++ Y+K GEME A
Sbjct: 202 KPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACR 261
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
LF + +D +SWN +I G+ + K+AL +F+EM GE P+DVTMLS+L+ACA LG
Sbjct: 262 LFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGA 321
Query: 284 LEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+++G+ +H + GV +LIDMYAKCG IE A +VF M R +S+W+ +I
Sbjct: 322 IDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMI 381
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G A HG A + +F +M++ + P +ITFVG+L ACSH+G ++ G+ F M +Y I
Sbjct: 382 FGFAMHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACSHSGMLDLGRHIFSSMTQDYKI 441
Query: 403 EPNIRHYGVHGDVELGRLA 421
P + HYG D+ LG+ A
Sbjct: 442 TPKLEHYGCMIDL-LGQCA 459
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 146/312 (46%), Gaps = 41/312 (13%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G A K+F +I D +N +I G ++ N +A+ LY +M K ++KP++ T V+
Sbjct: 153 GYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKPDESTMVTVV 212
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC + +G VH I +GF N V N+L+ ++ CG++ TA LF G D +
Sbjct: 213 SACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACRLFQGLVNKDAI 272
Query: 173 AWSSLTAGYARRGELSMARSLFDEM----------------------PVRDLVSW----- 205
+W++L G+ A LF EM D+ W
Sbjct: 273 SWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYI 332
Query: 206 --------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+I YAK G++E A+++F+ + R + SWNAMI G+ + G
Sbjct: 333 DKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANA 392
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
A ++F +MR G PDD+T + LL+AC+ G L++G+ + ++ K+ H +I
Sbjct: 393 AFDLFSKMRKSGIEPDDITFVGLLSACSHSGMLDLGRHIFSSMTQDYKITPKLEHYGCMI 452
Query: 312 DMYAKCGSIERA 323
D+ +C + A
Sbjct: 453 DLLGQCALFKEA 464
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 119/252 (47%), Gaps = 17/252 (6%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTF 71
+ +N+ +Q+ +L+ +GF S+ + L+ YS G + A ++F + D
Sbjct: 217 QSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKC----GEMETACRLFQGLVNKDAI 272
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+NT+I G +A+FL+ +M + PN T VL AC L ++G +H I
Sbjct: 273 SWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYI 332
Query: 132 VK--YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
K G + +R SLI +A CGD+ AS +FD + +W+++ G+A G+ +
Sbjct: 333 DKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANA 392
Query: 190 ARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS-----WNAMI 240
A LF +M D +++ +++ + G ++ +F+ + + ++ + MI
Sbjct: 393 AFDLFSKMRKSGIEPDDITFVGLLSACSHSGMLDLGRHIFSSMTQDYKITPKLEHYGCMI 452
Query: 241 SGYVLCGMNKQA 252
C + K+A
Sbjct: 453 DLLGQCALFKEA 464
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 195/374 (52%), Gaps = 48/374 (12%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
NSL+ HA + A LF V+W+++ Y G++S AR +FD+MP RD
Sbjct: 152 NSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMPTRDST 211
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SW+V+I GY K G M A E+F+ +P +++V+W AMI+GY G+ K++L +F EM + G
Sbjct: 212 SWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAG 271
Query: 264 ERPDDVTMLSLLTACADLGDLE----VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
PD TM+ +++A + +G E VG V ++ KVL AL+DM+AKCG+
Sbjct: 272 IEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERND---KVL--TALVDMHAKCGN 326
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
++ A+ F + D ++ LI GLA HG A+ ++ +F MQ V P ITFVGVL A
Sbjct: 327 VDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTA 386
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSHAG V++G Y++ M Y +E HY
Sbjct: 387 CSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPG 446
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
HG+VE+ + +L + +G+Y++LSNIYA + +W E++R +M
Sbjct: 447 ALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQWEEAERIRSVMR 506
Query: 461 DSDIKKQPGCSLIE 474
KQPG S +E
Sbjct: 507 TRLPFKQPGSSWVE 520
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 9/182 (4%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N ++ YAK ++ A+ ++ D VS+N+++ + A +F M S +
Sbjct: 121 NALVDLYAKCDDLPAAHTALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSRTQ- 179
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
V+ +++ + GD+ ++V + S V LI Y KCGS+ A E
Sbjct: 180 ---VSWNAMVVVYVNAGDVSSARRVFDQMPTRDSTSWSV-----LIVGYCKCGSMRSARE 231
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VF M +++ W+ +I G A G +ES+A+FREM+ + P T VGV+ A S G
Sbjct: 232 VFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGS 291
Query: 386 VE 387
E
Sbjct: 292 TE 293
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 122/265 (46%), Gaps = 34/265 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++ A ++F ++ + + +I G AQS P +++ L+ +ME I+P+ T V+
Sbjct: 224 GSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVI 283
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A +++ + V + K E N V +L+ HA CG+++ A F A+ D
Sbjct: 284 SAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAY 343
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+++L +G A G +A +F+ M + D +++ ++T + G ++K +
Sbjct: 344 PYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDY---- 399
Query: 229 PKRDVVSWNAMISGYVLCGMNKQA----------------LEMFEEMRSVGERPDDVTML 272
W AM+ Y GM ++A E FE ++++ P +
Sbjct: 400 -------WEAMVKYY---GMERRADHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPGALG 449
Query: 273 SLLTACADLGDLEVGKKVHCTLLDM 297
+LL+AC G++E+ + V L ++
Sbjct: 450 ALLSACKTHGNVEIAEIVANKLFEL 474
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD ++ L A A L L +G +H L + ++ NAL+D+YAKC + A
Sbjct: 79 PDHFSLPFALNAAASLRLLPLGASLHALALRLALLPCRLPVANALVDLYAKCDDLPAAHT 138
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+ D ++++L+ A ++ ++F M T++++ ++V +AG
Sbjct: 139 ALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSR----TQVSWNAMVVVYVNAGD 194
Query: 386 VEEGKKYFKLM 396
V ++ F M
Sbjct: 195 VSSARRVFDQM 205
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 151/506 (29%), Positives = 247/506 (48%), Gaps = 81/506 (16%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I A +F ++E D +N++I G AQS ++AV L+ Q+ +C +KP+ +T + VLKA
Sbjct: 373 IGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKA 432
Query: 115 CTRLLY-RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173
+ L ++ +H +K + FV +LI ++ + A VLF G D+VA
Sbjct: 433 ASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLF-GRNNFDLVA 491
Query: 174 WSSLTAGYARRGELSMARSLFDEMPVR--------------------------------- 200
W+++ +GY + + LF M +
Sbjct: 492 WNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAI 551
Query: 201 ----DLVSW--NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
DL W + ++ Y K G+M A F+ +P D V+W +ISG + G ++AL
Sbjct: 552 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALH 611
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314
+F +MR +G PD+ T+ +L A + L LE G+++H L + + G +L+DMY
Sbjct: 612 VFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNC-TSDPFVGTSLVDMY 670
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
AKCGSI+ A +F + +++ W+ ++ GLA HG +E++ +F++M+ L ++P ++TF+
Sbjct: 671 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFI 730
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
GVL ACSH+G V E KY + M +Y I+P I HY
Sbjct: 731 GVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSM 790
Query: 411 ---------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
V GD E G+ +LL + +S YVLLSN+YA+ +W+ ++
Sbjct: 791 EASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLA 850
Query: 456 RKLMDDSDIKKQPGCSLIEADDKAFL 481
R +M +KK PG S IE +K L
Sbjct: 851 RTMMKGHKVKKDPGFSWIEVKNKIHL 876
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 162/373 (43%), Gaps = 77/373 (20%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQS-----QNPLDAVFLYTQMEKCSIKPNKFT 107
G++ YA ++F K+ E D +N+I+ AQS +N +A L+ + + + ++ T
Sbjct: 95 GSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMT 154
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
S +LK C Y HG K G + + FV +L+
Sbjct: 155 LSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNI------------------ 196
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF-- 225
Y + G++ R LF+EMP RD+V WN+M+ Y + G E+A +L
Sbjct: 197 -------------YLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSA 243
Query: 226 --------NEVPKR----------------------------DVVSWNAMISGYVLCGMN 249
NE+ R +++S N ++SGY+ G
Sbjct: 244 FHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQY 303
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GN 308
L+ F +M D VT + +L L L +G++VHC L + G+ +L N
Sbjct: 304 SALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKL--GLDLMLTVSN 361
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+LI+MY K I A VF M +RD+ +W+++I G+A E++ +F ++ R ++P
Sbjct: 362 SLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKP 421
Query: 369 TEITFVGVLVACS 381
T VL A S
Sbjct: 422 DHYTMTSVLKAAS 434
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 155/360 (43%), Gaps = 36/360 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + +F ++ D ++N +++ + +A+ L + + PN+ T
Sbjct: 201 GKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITL---- 256
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNR--------FVRNSLI--YFHAN--CGDLNTAS 160
RLL R G VK FE RN ++ Y HA L
Sbjct: 257 ----RLLSRISGDDSEAGQVK-SFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFM 311
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSL--------FDEMPVRDLVSWNVMITGY 212
+ + D + D V + + A R L++ + + D M L N +I Y
Sbjct: 312 DMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLM----LTVSNSLINMY 367
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTML 272
K ++ A +FN + +RD++SWN++I+G + +A+ +F ++ G +PD TM
Sbjct: 368 CKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMT 427
Query: 273 SLLTACADLGD-LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
S+L A + L + L + K++H + T+ VA ALID Y++ ++ A EV G
Sbjct: 428 SVLKAASSLPEGLSLSKQIHVHAIK-TNNVADSFVSTALIDAYSRNRCMKEA-EVLFGRN 485
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+ D+ W+ ++ G +++ +F M + R + T VL C + +GK+
Sbjct: 486 NFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQ 545
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 131/288 (45%), Gaps = 20/288 (6%)
Query: 22 KQIQALVTINGFNSD---SSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIR 78
KQ+ A +G++ D SS + ++ V G ++ A F I PD + T+I
Sbjct: 544 KQVHAYAIKSGYDLDLWVSSGILDM-----YVKCGDMSAAQFAFDSIPVPDDVAWTTLIS 598
Query: 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEF 138
G ++ A+ +++QM + P++FT + + KA + L G +H +K
Sbjct: 599 GCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTS 658
Query: 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP 198
+ FV SL+ +A CG ++ A LF M++ AW+++ G A+ GE A LF +M
Sbjct: 659 DPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQME 718
Query: 199 V----RDLVSWNVMITGYAKQGEMEKANELFNEVP-----KRDVVSWNAMISGYVLCGMN 249
D V++ +++ + G + +A + + K ++ ++ + G+
Sbjct: 719 SLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLV 778
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
K+A + + M +LL AC GD E GK+V LL++
Sbjct: 779 KEAENLIDSMSMEASAS---MYRTLLAACRVQGDTETGKRVATKLLEL 823
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 112/257 (43%), Gaps = 46/257 (17%)
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
+G C H +I+ RF+ N+LI ++ CG L A +FD + D+V+W+S+ A YA
Sbjct: 64 LGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYA 123
Query: 183 RRGE---------LSMARSLFDEMPVRDLVSWNVMIT---------------GYA----- 213
+ E + R L ++ ++ + M+ GYA
Sbjct: 124 QSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGL 183
Query: 214 ---------------KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEE 258
K G++++ LF E+P RDVV WN M+ Y+ G ++A+++
Sbjct: 184 DGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSA 243
Query: 259 MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318
+ G P+++T+ L D D E G+ + S V++++ N ++ Y G
Sbjct: 244 FHTSGLHPNEITLRLLSRISGD--DSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAG 301
Query: 319 SIERAIEVFLGMRDRDV 335
++ F+ M + D+
Sbjct: 302 QYSALLKCFMDMVESDL 318
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 17/199 (8%)
Query: 185 GELSMARSL-FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
G+ + AR L +E P R LV N +I+ Y+K G + A +F+++P+RD+VSWN++++ Y
Sbjct: 65 GKCTHARILALEENPERFLV--NNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAY 122
Query: 244 VLCGMN-----KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH---CTL- 294
K+A +F +R +T+ +L C G + + H C +
Sbjct: 123 AQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIG 182
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
LD VA AL+++Y K G ++ +F M RDV W+ ++ GF EE+
Sbjct: 183 LDGDDFVA-----GALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEA 237
Query: 355 IAMFREMQRLKVRPTEITF 373
I + + P EIT
Sbjct: 238 IDLSSAFHTSGLHPNEITL 256
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
DL +GK H +L + + L N LI MY+KCGS+ A VF M +RD+ +W++++
Sbjct: 61 DLMLGKCTHARILALEENPERFLVNN-LISMYSKCGSLTYARRVFDKMPERDLVSWNSIL 119
Query: 343 GGLA--FHGFAE---ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386
A G E E+ +FR +++ V + +T +L C H+G V
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 168
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 151/473 (31%), Positives = 222/473 (46%), Gaps = 79/473 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G +A +F ++ + R A S A+ L+ M P+ + VL
Sbjct: 60 GRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFMPDNVALAVVL 119
Query: 113 KAC----TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168
AC + R+ G VH IV G E + FV LI
Sbjct: 120 AACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRV------------------- 160
Query: 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEV 228
Y RGE+++AR +FD MP + ++WN M+ Y + ++E A LF +
Sbjct: 161 ------------YGERGEMTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAM 208
Query: 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE---RPDDVTMLSLLTACADLGDLE 285
P+RDVVSWN +I+GY L G K+AL +F +M S P+ TM ++L+ACA G LE
Sbjct: 209 PRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLE 268
Query: 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF-LGMRDRDVSTWSTLIGG 344
G VH +D LIDMYAKCGSI++A++VF RD+ +W+T+I G
Sbjct: 269 TGIWVH-LYIDKNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICG 327
Query: 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
LA HG A + + MF MQ + P ++TFVGVL AC+H G V+EG +F M+++Y I P
Sbjct: 328 LAMHGRANDVLRMFSMMQDSGMCPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITP 387
Query: 405 NIRHYG---------------------------------------VHGDVELGRLANKRL 425
I HYG VH VELG +A +
Sbjct: 388 KIEHYGCMIDLLGRVGRLPEAYRMIQTMPMKPNMVIWGAFLSACKVHSSVELGEIAAAEV 447
Query: 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ D+ V++S++YA +W+ + + R+ M+ +KK PGCS + D +
Sbjct: 448 TRLDPDDPWARVMMSSMYAKAQDWSGLARERREMNSLQMKKTPGCSSVALDGE 500
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 16/226 (7%)
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
++L + Y G AR LFDEMP + LV+ M +A G+ +A +LF ++ +
Sbjct: 50 TALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFM 109
Query: 235 SWN-------AMISGYVLCGMNKQALEMFEE-MRSVGERPDDVTMLSLLTACADLGDLEV 286
N A G C + M + + G PD L+ + G++ V
Sbjct: 110 PDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTV 169
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
++V ++ ++ + N ++ Y + IE A +FL M RDV +W+T+I G
Sbjct: 170 ARRVFDSMPTKST-----IAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYC 224
Query: 347 FHGFAEESIAMFREM---QRLKVRPTEITFVGVLVACSHAGKVEEG 389
G +E++ +FR+M V P T VL AC+ AG +E G
Sbjct: 225 LVGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETG 270
>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14050, mitochondrial-like [Cucumis sativus]
Length = 611
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 146/496 (29%), Positives = 249/496 (50%), Gaps = 81/496 (16%)
Query: 23 QIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
++ + + GF+ S L +Y +IP A+ ++F ++ D + +I+
Sbjct: 24 ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQAL----QLFDEMPNRDHVSWASILTAH 79
Query: 81 AQSQNPLDAV-FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN 139
++ P + L T ++P+ F F+ +++AC+ L Y +G VH + + F +
Sbjct: 80 NKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDD 139
Query: 140 RFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV 199
V++SLI + CG + AR++FD +
Sbjct: 140 EVVKSSLIDMYTKCGQPDE-------------------------------ARAVFDSILF 168
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
++ VSW MI+GYA+ G +A +LF + P R++ SW A+ISG + G + +F EM
Sbjct: 169 KNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEM 228
Query: 260 RSVG-ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKC 317
R G + D + + S++ CA+L LE+GK++H ++ + G L NAL+DMYAKC
Sbjct: 229 RREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIAL--GFESCLFISNALVDMYAKC 286
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
I A ++F M +DV +W+++I G A HG AEE++ ++ EM +++P E+TFVG+L
Sbjct: 287 SDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLL 346
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------------------- 411
ACSHAG V G++ F+ M +Y+I P+++HY
Sbjct: 347 YACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPD 406
Query: 412 -------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
H ++E+G R+L+++ ++ Y+LLSN+YA W V KVRKL
Sbjct: 407 EPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKL 466
Query: 459 MDDSDIKKQPGCSLIE 474
M +++K+PG S I+
Sbjct: 467 MSSMEVRKEPGYSSID 482
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 154/501 (30%), Positives = 233/501 (46%), Gaps = 109/501 (21%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G A +F +IT+ + +N +IR + DA+ +Y M P+ +T+ VL
Sbjct: 68 GEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVL 127
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KA +R +G +HG ++K G + N +V N LI + C L A
Sbjct: 128 KASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEA------------- 174
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG----------EMEKAN 222
+ + DE+P RD+VSWN M++ YA+ G EME N
Sbjct: 175 ------------------QQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALN 216
Query: 223 ---------------------------ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
E+F ++ K+ V+SWN MI+ YV M K+A+ +
Sbjct: 217 LKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVL 276
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315
+ +M + G PD V+++S+L A DL L +G++VH + + +L NALIDMYA
Sbjct: 277 YSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVH-KFAERKKLLPNLLLENALIDMYA 335
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
KCG + A VF M+ RDV +W+++I G +++A+F EM+ + P I FV
Sbjct: 336 KCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVS 395
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------- 410
VL ACSHAG +++G+ YF LM E I P + H+
Sbjct: 396 VLAACSHAGLLDDGRYYFNLMA-ECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLE 454
Query: 411 --------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456
V+ ++ +G LA +LL + + SG YVLLSNIYA G W V +R
Sbjct: 455 PDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIR 514
Query: 457 KLMDDSDIKKQPGCSLIEADD 477
+M+ IKK PG S +E +D
Sbjct: 515 SIMERKGIKKLPGISNVELND 535
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 3/172 (1%)
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
YA GE A +F+E+ ++VV +N MI YV + K AL +++ M + G PD T
Sbjct: 64 YAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTY 123
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGM 330
+L A + L VG ++H +L + G+ L+ GN LI MY KC S++ A +V +
Sbjct: 124 PCVLKASSRSDSLWVGLQIHGAVLKI--GLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEI 181
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382
RDV +W++++ A +G +++ + REM+ L ++P + T +L A ++
Sbjct: 182 PCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTN 233
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 136/332 (40%), Gaps = 78/332 (23%)
Query: 108 FSFVLKACTRLL--YRNMGFC--VHGKIVKYGF-EFNRFVRNSLIYFHANCGDLNTASVL 162
SF C R+L Y ++ +HGK++ + +N V L+ +A CG+ A +
Sbjct: 17 LSFTEDLCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHI 76
Query: 163 FDGDAKMDVVAWSSLTAGYAR----RGELSMARSLFDEMPVRDLVSW------------- 205
FD +VV ++ + Y + L + ++++ + V D+ ++
Sbjct: 77 FDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSL 136
Query: 206 ----------------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
N +I Y K +++A ++ +E+P RDVVSWN+M+S Y
Sbjct: 137 WVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVY 196
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
G ALE+ EM ++ +P+D TM SLL A + V
Sbjct: 197 AQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNV----------------- 239
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
+Y K E+FL + + V +W+ +I + +E++ ++ +M+
Sbjct: 240 ---------LYVK--------EMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEA 282
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
V P ++ V VL A + G++ K
Sbjct: 283 NGVEPDVVSIVSVLPAYGDLSALSLGRRVHKF 314
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 227/466 (48%), Gaps = 74/466 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++ ++ E + + T++ Q N +AV LY+QM +PN FS VL
Sbjct: 326 GDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVL 385
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L G +H + +K N FV ++LI + C L A ++F + ++V
Sbjct: 386 GACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIV 445
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
W+SL +GY+ ++ A LF +MP R++ SWN +I+GYA+ N F +
Sbjct: 446 CWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQ-------NRQFID----- 493
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
AL+ F M + G+ P ++T S+L ACA L LE+GK VH
Sbjct: 494 -------------------ALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHA 534
Query: 293 TLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
++ + G+ + + G AL DMYAK G ++ + VF M R+ W+ +I GLA +GFA
Sbjct: 535 KIIKL--GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFA 592
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411
EESI +F +M + P E TF+ +L ACSH+G VE YF++M+ I P +HY
Sbjct: 593 EESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQ-ACGISPKAKHYTC 651
Query: 412 HGDV---------------------------------------ELGRLANKRLLNMRKDE 432
DV E+G A KRL + KD
Sbjct: 652 MVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDN 711
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ YVLLSN+YAS G+W ++R LM ++KK GCS ++ D+
Sbjct: 712 TAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRDE 757
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 170/370 (45%), Gaps = 64/370 (17%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++ A +++ + + +I G ++ P DA+ ++ +M C + PN+ T V+
Sbjct: 193 GSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVI 252
Query: 113 KACTRLLYRNMGFCVHGKIVKYGF-EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
KAC ++ + G +K + N VRNSLI
Sbjct: 253 KACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITL---------------------- 290
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
Y R+G+ AR +FDEM VRD+VSW ++ YA+ G++E A + +E+P+R
Sbjct: 291 ---------YLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPER 341
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
+ VSW +++ + G K+A+ ++ +M + G RP+ S+L ACA L DL G+K+H
Sbjct: 342 NEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIH 401
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
L M V +ALIDMY KC + A +F + +++ W++LI G + +
Sbjct: 402 NQTLKMACS-NNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460
Query: 352 EESIAMFREMQRLKV-------------------------------RPTEITFVGVLVAC 380
E+ +F++M V P EITF VL+AC
Sbjct: 461 VEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520
Query: 381 SHAGKVEEGK 390
+ +E GK
Sbjct: 521 ASLCSLEMGK 530
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 31/242 (12%)
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
+ + G++ AR LFD MP R +VS+ M+ K+G + A EL+ + P V + AMI
Sbjct: 158 HVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMI 217
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE-----VGKKVHCTLL 295
+G+VL + K AL +F EM S G P+++T++S++ AC G+ + VG + LL
Sbjct: 218 AGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLL 277
Query: 296 DMTSGVAK--------------------------VLHGNALIDMYAKCGSIERAIEVFLG 329
D GV V+ AL+D+YA+ G +E A V
Sbjct: 278 DKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDE 337
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M +R+ +W TL+ G A+E+++++ +M RP F VL AC+ + G
Sbjct: 338 MPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSG 397
Query: 390 KK 391
+K
Sbjct: 398 RK 399
>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
Length = 603
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 144/460 (31%), Positives = 228/460 (49%), Gaps = 54/460 (11%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
+ A ++F + P T + N ++ G A+ DA L+ +M+ P+ +++ ++
Sbjct: 133 VREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQT----PDLVSWNAMITG 188
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
TR V ++ E + +++ + GD++ A +F DV+AW
Sbjct: 189 YTRAGMMQ----VAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAW 244
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
+++ +G+ L A LF +MP RDLVSWN ++ GY +QG+M+ A F ++P++D
Sbjct: 245 NTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKMPEKDEA 304
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH-CT 293
SWN +ISGY ++ AL + EM G RPD T ++ C+ L L G+ VH CT
Sbjct: 305 SWNTLISGY----KDEGALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCT 360
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+ A V+ ++LI MY+KCG I A +VF + RD TW+ +I A+HG A E
Sbjct: 361 IKTGFERDALVM--SSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAE 418
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
++ +F M + P TF+ VL AC+H G + EG +F+ M+ ++N+ P HY
Sbjct: 419 ALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRSDHYSCMV 478
Query: 411 ------------------------------------VHGDVELGRLANKRLLNMRKDESG 434
HGD++LG L K +L R + G
Sbjct: 479 DLLGRSGFVHQAYNFTRRIPSDLQINAWETLFSSCNAHGDIQLGELVAKNVLQSRPSDGG 538
Query: 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
Y LLSNIYA++G W+ VR LM + +KK+ GCS IE
Sbjct: 539 MYTLLSNIYAAKGMWSSAASVRGLMKEQGLKKETGCSWIE 578
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 131/249 (52%), Gaps = 13/249 (5%)
Query: 150 HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMI 209
H G + A +FD ++ +V W+ + +G R G L+ AR +FD MP R+ VSW ++
Sbjct: 3 HFRAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAALL 62
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269
TGYA+ G + +A ELF+ +P R VVSWNAMISGY+ GM +A ++F+ M + +DV
Sbjct: 63 TGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPA----RNDV 118
Query: 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329
+ L +++ + +++ T+ V NAL+ YA+ G ++ A ++F
Sbjct: 119 SWLMMISGYMKRKRVREAREIFDRAPSPTTSVC-----NALLSGYAEHGYLKDAEDLFGR 173
Query: 330 MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
M+ D+ +W+ +I G G + + +F EM +++ ++ G V+
Sbjct: 174 MQTPDLVSWNAMITGYTRAGMMQVAQRLFDEMP----EKDTVSWTAIVRGYLQNGDVDAA 229
Query: 390 KKYFKLMRD 398
K F+ M D
Sbjct: 230 WKVFQDMPD 238
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 160/323 (49%), Gaps = 18/323 (5%)
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E N F N +I G L A +FD + V+W++L GYAR G ++ AR LFD
Sbjct: 21 ERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAALLTGYARCGRVAEARELFDR 80
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP R +VSWN MI+GY G +++A +LF+ +P R+ VSW MISGY+ ++A E+F
Sbjct: 81 MPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMMISGYMKRKRVREAREIF 140
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
+ S P +LL+ A+ G L+ + + + ++ NA+I Y +
Sbjct: 141 DRAPS----PTTSVCNALLSGYAEHGYLKDAEDLFGRM-----QTPDLVSWNAMITGYTR 191
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376
G ++ A +F M ++D +W+ ++ G +G + + +F++M V G
Sbjct: 192 AGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAWNTMMSGF 251
Query: 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGRLANKRLLNMRKDESG 434
+V + ++++ + F M D + N ++ Y GD++ G A R + KDE+
Sbjct: 252 VV----SERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMD-GATAWFRKMP-EKDEAS 305
Query: 435 DYVLLSNIYASRGEWNRVEKVRK 457
L+S Y G N + ++ +
Sbjct: 306 WNTLISG-YKDEGALNLLSEMTQ 327
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 148/423 (34%), Positives = 212/423 (50%), Gaps = 83/423 (19%)
Query: 104 NKFTFSFVLK-----------ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHAN 152
N +F+F+L A + R MG VH VK G + +VRN+ I+F+
Sbjct: 120 NPHSFTFLLASLSNHLDTEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGV 179
Query: 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITG 211
CGD+ + R +FDE+P VRD+V+WN ++ G
Sbjct: 180 CGDV-------------------------------AAMRKVFDELPIVRDVVTWNAVLAG 208
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
Y + G + A E+F+ +P RD VSW+ +I GYV G + AL +F+ M + G + ++ +
Sbjct: 209 YVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAI 268
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
++ L+A A LG LE GK VH ++ V G ALIDMY+KCGS+ A EVF M
Sbjct: 269 VTALSAAAQLGLLEQGKFVH-EVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMP 327
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
RDV W+++I GLA HG +++ +F + PT ITFVGVL ACS G V+EG++
Sbjct: 328 RRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRR 387
Query: 392 YFKLMRDEYNIEPNIRHYGV---------------------------------------H 412
YFKLM ++Y+IE + HYG H
Sbjct: 388 YFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRH 447
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
G V+LG +L+ + G YVLL++IYA +W+ V KVRKLM + K G SL
Sbjct: 448 GLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSL 507
Query: 473 IEA 475
+EA
Sbjct: 508 MEA 510
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 12/254 (4%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++F + D ++T+I G + P A+ ++ M +K N+ L
Sbjct: 213 GMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTAL 272
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A +L G VH + + G + + +LI ++ CG + A +FD + DV
Sbjct: 273 SAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVF 332
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY----AKQGEMEKANELFNEV 228
AW+S+ G A G A LF++ ++ G ++ G +++ F +
Sbjct: 333 AWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLM 392
Query: 229 P-KRDVVS----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
K D+ S + M+ G+ ++A+E+ E MR PD V ++L+AC G
Sbjct: 393 AEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRI---PPDPVLWGTILSACKRHGL 449
Query: 284 LEVGKKVHCTLLDM 297
+++G V L+++
Sbjct: 450 VDLGITVGNKLIEL 463
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 241/506 (47%), Gaps = 82/506 (16%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
+ A K+F ++ + D +N++I G + + L+ QM I + T V+
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C+ +G +HG +K F + N L+ ++ G+LN+A +F+ + VV+W
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320
Query: 175 SSLTAGYARRGELSMARSLFDEMPVR---------------------------------- 200
+S+ AGYAR G M+ LF EM
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKE 380
Query: 201 -----DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
DL N ++ YAK G M A+ +F+E+ +D+VSWN MI GY + +AL +
Sbjct: 381 NKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNL 440
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMY 314
F EM+ +P+ +TM +L ACA L LE G+++H +L +G + H NAL+DMY
Sbjct: 441 FVEMQ-YNSKPNSITMACILPACASLAALERGQEIHGHIL--RNGFSLDRHVANALVDMY 497
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
KCG++ A +F + ++D+ +W+ +I G HG+ E+IA F EM+ + P E++F+
Sbjct: 498 LKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFI 557
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
+L ACSH+G ++EG +F +MR+ IEP HY
Sbjct: 558 SILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPI 617
Query: 411 ---------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
++ DV+L + + + + +G YVLL+NIYA +W V+K+
Sbjct: 618 EPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKL 677
Query: 456 RKLMDDSDIKKQPGCSLIEADDKAFL 481
R+ + ++K PGCS IE K +
Sbjct: 678 RERIGRRGLRKNPGCSWIEIKGKVHI 703
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 190/379 (50%), Gaps = 26/379 (6%)
Query: 25 QALVTINGF-----NSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
+L NGF +S + + +Y I ++ + + KIT+ YN I
Sbjct: 23 NSLTYPNGFIFFRPSSKTPLVSSNLYHSCATIGTSVLPSETIDCKITD-----YNIEICR 77
Query: 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN 139
+ N A+ L Q K ++ T+ VL+ C L G +H I E +
Sbjct: 78 FCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVD 135
Query: 140 RFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV 199
+ + L++ + CGDL +FD A V W+ L GYA+ G + SLF M
Sbjct: 136 GVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRM-- 193
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
R+L V E A +LF+E+ RDV+SWN+MISGYV G++++ L++FE+M
Sbjct: 194 RELGIRRV-----------ESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQM 242
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
+G D TM+S++ C++ G L +G+ +H + + G L+ N L+DMY+K G+
Sbjct: 243 LLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLN-NCLLDMYSKSGN 301
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
+ AI+VF M +R V +W+++I G A G ++ S+ +F EM++ + P T +L A
Sbjct: 302 LNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHA 361
Query: 380 CSHAGKVEEGKKYFKLMRD 398
C+ G +E GK +++
Sbjct: 362 CACTGLLENGKDVHNYIKE 380
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 17/249 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++ AH +F ++ D +NT+I G +++ P +A+ L+ +M+ S KPN T + +L
Sbjct: 401 GSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACIL 459
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L G +HG I++ GF +R V N+L+ + CG L A +LFD + D+V
Sbjct: 460 PACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLV 519
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+ + AGY G S A + F+EM D VS+ ++ + G +++ FN +
Sbjct: 520 SWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMM 579
Query: 229 -------PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
PK + + ++ G +A + + M PD +LL C
Sbjct: 580 RNNCCIEPKSE--HYACIVDLLARAGNLSKAYKFIKMMPI---EPDATIWGALLCGCRIY 634
Query: 282 GDLEVGKKV 290
D+++ +KV
Sbjct: 635 HDVKLAEKV 643
>gi|242038381|ref|XP_002466585.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
gi|241920439|gb|EER93583.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
Length = 529
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 127/372 (34%), Positives = 204/372 (54%), Gaps = 42/372 (11%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
NS++ A G L+ A LFD + + +W++L +G+ +G L+ A+ LF+ MP+R+ V
Sbjct: 157 NSMVAGLAKAGHLDEAIELFDQMPETNAASWNALVSGFMAQGHLAQAQELFERMPIRNNV 216
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM--RS 261
SW MI+GYAK G+++ A LF+ + +D+ +WNAMIS Y G ++AL +F M
Sbjct: 217 SWITMISGYAKAGDVQAAANLFDRMDSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPH 276
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
+ P++ T S+++AC+ LGDL G V + + + L ALID+Y K G ++
Sbjct: 277 IWVAPNEKTFSSVISACSQLGDLRFGLWVESFMGYVGVHLDDHLR-TALIDLYTKSGQMD 335
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
RA ++F G+R RDV ++S +I G HG E+I++F+EM + ++ P +TFVG+L A S
Sbjct: 336 RAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAISLFKEMSKARIDPNAVTFVGLLSAYS 395
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------------------------ 411
HAG +EE + F M +Y I P++ HY +
Sbjct: 396 HAGLLEEARACFTSMSSKYKINPSMEHYTIMVDILGRCGKLEEAFQLIMQIPVCPHASVW 455
Query: 412 ---------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462
H ++ELG +A + + ESG Y+LL NIYA +W++V+ +RK+M +
Sbjct: 456 GALLLACRLHNNIELGEVAASKCFELEPKESGYYILLGNIYAQAKKWDKVKGLRKMMAER 515
Query: 463 DIKKQPGCSLIE 474
+ K PG S +
Sbjct: 516 GLSKTPGSSWVH 527
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 149/333 (44%), Gaps = 60/333 (18%)
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+ IR +A PL A+ LY + S +P F + VLK+ RL +
Sbjct: 14 WTITIRAAADQGRPLRAIALYLASLRSSCRPCPFALAAVLKSVPRLPEHD----ALPAAA 69
Query: 133 KYGFEFNRFVRNSLIYFHANCGDL----------NTASVLFDGDAKMD----VVAWSSLT 178
R S Y HA L + +L D A + +V+ +SL
Sbjct: 70 SLHGHLLRLGLLSHPYPHAALSHLYSRLLPPHHDHARGLLDDAPAALHSHSRLVSSNSLL 129
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
A R G+++ AR++F+ MP RD+VSWN M+ G AK G +++A ELF+++P+ + SWNA
Sbjct: 130 ASLLRAGDITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETNAASWNA 189
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
++SG++ G QA E+FE M + + + + M
Sbjct: 190 LVSGFMAQGHLAQAQELFERMP---------------------------IRNNVSWITMI 222
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
SG YAK G ++ A +F M +D+ W+ +I A +G A E++ +F
Sbjct: 223 SG-------------YAKAGDVQAAANLFDRMDSKDLYAWNAMISCYAQNGCAREALGIF 269
Query: 359 REMQR--LKVRPTEITFVGVLVACSHAGKVEEG 389
M + + V P E TF V+ ACS G + G
Sbjct: 270 NRMLKPHIWVAPNEKTFSSVISACSQLGDLRFG 302
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 118/247 (47%), Gaps = 14/247 (5%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI--KPNKFTFSF 110
G + A +F ++ D + +N +I AQ+ +A+ ++ +M K I PN+ TFS
Sbjct: 229 GDVQAAANLFDRMDSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVAPNEKTFSS 288
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
V+ AC++L G V + G + +R +LI + G ++ A LF G D
Sbjct: 289 VISACSQLGDLRFGLWVESFMGYVGVHLDDHLRTALIDLYTKSGQMDRAFDLFRGLRSRD 348
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFN 226
VV++S++ G G+L+ A SLF EM + V++ +++ Y+ G +E+A F
Sbjct: 349 VVSYSAMIVGCGMHGKLNEAISLFKEMSKARIDPNAVTFVGLLSAYSHAGLLEEARACFT 408
Query: 227 EVPKRDVVS-----WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281
+ + ++ + M+ CG ++A ++ ++ P +LL AC
Sbjct: 409 SMSSKYKINPSMEHYTIMVDILGRCGKLEEAFQLIMQIPVC---PHASVWGALLLACRLH 465
Query: 282 GDLEVGK 288
++E+G+
Sbjct: 466 NNIELGE 472
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375
+ G I A +F M +RDV +W++++ GLA G +E+I +F +M G
Sbjct: 134 RAGDITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETNAASWNALVSG 193
Query: 376 VLVACSHAGKVEEGKKYFKLMRDEYNIE--PNIRHYGVHGDVE 416
+ G + + ++ F+ M N+ I Y GDV+
Sbjct: 194 FMA----QGHLAQAQELFERMPIRNNVSWITMISGYAKAGDVQ 232
>gi|326513504|dbj|BAJ87771.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524908|dbj|BAK04390.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 505
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 149/473 (31%), Positives = 239/473 (50%), Gaps = 84/473 (17%)
Query: 46 SGSVVIPGAINYAHKMFVK-ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN 104
+G + AI AH F+ + F YNT++RG A S +P DA+ L+ M + P+
Sbjct: 59 AGDLRQAAAILSAHLPFISSASSHPAFFYNTLMRGLAASSSPGDAIGLFAAMRRAGAAPD 118
Query: 105 KFTFSFVLKACTRLLY-RNMGFCVHGKIVKYG----FEFNRFVRNSLIYFHANCGDLNTA 159
FTF+FVLK+C+R R + +H + +++G + V N+L++
Sbjct: 119 AFTFTFVLKSCSRCPSGRRLPSDLHAQAIRHGCLGELSAHTHVHNALLH----------- 167
Query: 160 SVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEME 219
YA R + A +F+E+PVRD+VS++ ++T + K ++
Sbjct: 168 --------------------AYACRAAVDDACRVFEEIPVRDVVSFSGLLTAHLKANDLH 207
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
A +F+++P RDVVSW AMIS Y ++AL +F+ M +PD+VTM+S+++AC
Sbjct: 208 AARLVFDQMPHRDVVSWTAMISAYAKACRPQEALALFDAMPM---QPDEVTMVSIVSACT 264
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
LGDL G++V + + G L NAL+DMYAKCGS+ A +F GM R +++W+
Sbjct: 265 TLGDLATGERVRRHIDSLGFGWMVSLR-NALMDMYAKCGSLPEARALFDGMTVRSLASWN 323
Query: 340 TLIGGLAFHGFAEESIAMFREM--QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM- 396
TLI A HG + +IA+F +M + V+P +T + +L+A +H G VEEG+ F M
Sbjct: 324 TLISAYASHGDLDNTIAVFYQMLAEGNTVKPDGVTLLALLIAYTHKGCVEEGRAMFNAMQ 383
Query: 397 RDEYN-IEPNIRHYG---------------------------------------VHGDVE 416
R + +E + HYG HGD++
Sbjct: 384 RGNFGKVELTVEHYGCVVDMLGRAGKLEEAYQVIEQMPIPSNAVIWGALLGACRTHGDID 443
Query: 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469
+ A K L N+ +E G Y+LLS++YAS G ++R M++ ++K G
Sbjct: 444 MAERAVKELRNLNPEEGGYYILLSDMYASAGRIAEATEIRHAMNERGVQKTTG 496
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 169/531 (31%), Positives = 254/531 (47%), Gaps = 115/531 (21%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSAL-RELIYSGSVVIPGAINYAHKMFVKITEP 68
RL +L KQI A G + L + L++ + + + YA + ++
Sbjct: 20 RLHLAAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPH 79
Query: 69 ---DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
D F NT++R +A S P A+ L+ + P+ T+ +++AC RLL G
Sbjct: 80 GPLDPFPLNTVLRIAAGSPRPRVALELHRRRLAL---PDTHTYPPLIQACARLLALREGE 136
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
C+H + K GF FV+NSL++ + CG LF+
Sbjct: 137 CLHAEAAKNGFVTLVFVQNSLVHLYGACG-------LFES-------------------- 169
Query: 186 ELSMARSLFDEMPV--RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
A +FDEMPV R+LVSWN M+ +A G + NE+
Sbjct: 170 ----AHKVFDEMPVRGRNLVSWNSMLNSFAANG---RPNEV------------------- 203
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
L +F EM V PD T++S+LTACA+ G L +G++VH + + G+ +
Sbjct: 204 ---------LTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKV--GLVE 252
Query: 304 VLH-GNALIDMYAKCGSIERAIEVFLGM-RDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
H NALID+YAKCGS+ A +F M R V +W++LI GLA +GF +E++ +F M
Sbjct: 253 NSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLM 312
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
+R K+ PTEIT VGVL ACSH G V++G +YF M+++Y I P I H G
Sbjct: 313 EREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGR 372
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
+H +ELG++A +RL+ + SGDYVLLSN+
Sbjct: 373 VEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNL 432
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
YA+ G W V +RK M ++K PG SL+E + + +++ + P S
Sbjct: 433 YAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVY-EFVMGDRSHPES 482
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 147/504 (29%), Positives = 243/504 (48%), Gaps = 50/504 (9%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
KQ A+ +N + D+ +I S V G I A +F ++ E D +N +I
Sbjct: 303 KQGHAIAILNSLDLDNILGSSIINFYSKV--GLIEDAELVFSRMLEKDVVTWNLLISSYV 360
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
Q A+ + M +++ + T S +L A +G H ++ E +
Sbjct: 361 QHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVV 420
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV-- 199
V NS+I +A C ++ A +FD + D+V W++L A YA+ G A LF +M
Sbjct: 421 VANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDS 480
Query: 200 --RDLVSWNVMITGYAKQGEMEKANELFNEVP----KRDVVSWNAMISGYVLCGMNKQAL 253
+++SWN +I G+ + G++ +A ++F+++ + ++++W +ISG G +A+
Sbjct: 481 VPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAI 540
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
F++M+ G RP ++ S+L AC D+ L G+ +H + V +L+DM
Sbjct: 541 LFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIH-GFITRHEFCLSVPVATSLVDM 599
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YAKCGSI+ A +VF M +++ ++ +I A HG A E++A+F+ +Q+ + P ITF
Sbjct: 600 YAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITF 659
Query: 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------------------- 411
+L ACSHAG V EG F M ++N+ P + HYG
Sbjct: 660 TSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMP 719
Query: 412 -----------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454
H ++ELG +K L + SG+YV LSN YA+ G W V
Sbjct: 720 FQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSN 779
Query: 455 VRKLMDDSDIKKQPGCSLIEADDK 478
+R LM ++K PGCS I+ K
Sbjct: 780 MRDLMKVRGLRKNPGCSWIQTGGK 803
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 208/431 (48%), Gaps = 47/431 (10%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINY---AHKMFVKITEPDTFMYN 74
L T +QI A + NG D A E + + VV ++ A ++F ++ + F +
Sbjct: 95 LHTGQQIHARILKNG---DFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWA 151
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
I+ + DA+ + +M++ + P+ F VLKAC L +G VHG ++K
Sbjct: 152 AIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKM 211
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF 194
GF FV +SL+ + CG L A +FD + +VV W+S+ GY + G A +F
Sbjct: 212 GFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVF 271
Query: 195 DEM------PVRDLVS--------WNVMITG-------------------------YAKQ 215
+M P R V+ + +I G Y+K
Sbjct: 272 YDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKV 331
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
G +E A +F+ + ++DVV+WN +IS YV +AL M MRS R D VT+ S+L
Sbjct: 332 GLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSIL 391
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+A A ++++GK+ HC + + V+ N++IDMYAKC I+ A +VF +RD+
Sbjct: 392 SASAVTSNIKLGKEGHCYCIRRNLE-SDVVVANSIIDMYAKCERIDDARKVFDSTTERDL 450
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395
W+TL+ A G + E++ +F +MQ V P I++ V++ G+V E K F
Sbjct: 451 VLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQ 510
Query: 396 MRDEYNIEPNI 406
M+ +PN+
Sbjct: 511 MQS-LGFQPNL 520
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 158/345 (45%), Gaps = 42/345 (12%)
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG--FEFNRFVRNS 145
++V L ++ME + + +L+ C + G +H +I+K G F N +V
Sbjct: 62 ESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETK 121
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
L+ F+A C A LF +V +W+++ R G A F EM +
Sbjct: 122 LVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPD 181
Query: 206 NVMITG---------------------------------------YAKQGEMEKANELFN 226
N ++ Y K G +E A ++F+
Sbjct: 182 NFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFD 241
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286
+ +++VV+WN+MI GYV G+N++A+++F +MR G P VT+ S L+A A+L L
Sbjct: 242 SMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIE 301
Query: 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346
GK+ H + + + +L G+++I+ Y+K G IE A VF M ++DV TW+ LI
Sbjct: 302 GKQGHAIAILNSLDLDNIL-GSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYV 360
Query: 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
H +++ M M+ +R +T +L A + ++ GK+
Sbjct: 361 QHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKE 405
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 149/505 (29%), Positives = 244/505 (48%), Gaps = 81/505 (16%)
Query: 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
++ KQI A N S ++ ++ G YA +F I P+ F YN+II
Sbjct: 1 MKQTKQIHAHAITNNLTRFSYISSRILAFFALSPRGDFRYAETLFTHIPNPNIFDYNSII 60
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
+ F++T+M +I+PN TF+ ++KAC L F + K+
Sbjct: 61 TSYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLVKACVSLSSLEQVFTLSMKL------ 114
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
G++ DV SS+ +++ + +AR +FDE
Sbjct: 115 ---------------------------GNSS-DVYFVSSVINAFSKHSAIHLARQVFDEC 146
Query: 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
R++V W +++GY G + +A ++F+++P R+ S++AM+SGYV G + +++F
Sbjct: 147 SNRNVVCWTSLVSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFR 206
Query: 258 EMRSVGE-----RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALI 311
E++ + + + ++S+L AC +G E GK +H + + +G+ L G ALI
Sbjct: 207 ELKKKDKGCACLKFNGALLVSVLNACTMVGAFEEGKWIHSYVEE--NGLEYDLELGTALI 264
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
D Y KCG ++ A +VF M +DV+TWS +I GLA +G + ++ +F +M+++ +P E+
Sbjct: 265 DFYMKCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEV 324
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TFVGVL AC+H E + F +M ++YNI P+I HYG
Sbjct: 325 TFVGVLTACNHKSLFGESARLFGIMSEKYNITPSIEHYGCVVDVLARSGQVKKALTFINS 384
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+HG ELG+ K L+ SG YVLL+N+YA+ G+W V
Sbjct: 385 MHIEPDGAIWGSLLNGCLMHGHYELGQKVGKYLIEFEPKHSGRYVLLANMYANMGKWEGV 444
Query: 453 EKVRKLMDDSDIKKQPGCSLIEADD 477
+VRKLM D + G S IE D
Sbjct: 445 SEVRKLMKDRGVMIVSGWSFIEIDQ 469
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 142/497 (28%), Positives = 248/497 (49%), Gaps = 76/497 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
+++ A GF D+ L+ +++ G +++A K+F ++ + ++N ++R
Sbjct: 66 RKVHAAAVKTGFRWDAYTASSLLEMYTML--GRVDFARKVFDEMPQRFLVLWNMMMRCYI 123
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
+ AV L +ME+ P++ T + AC+R ++G R
Sbjct: 124 RCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLG---------------RR 168
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRD 201
+R + DG + ++L Y + G L A +F +MP R+
Sbjct: 169 IRAYM-----------------DGVFGFSLPVANALLDMYTKNGYLEEAVKMFQQMPERN 211
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
++SW ++++GYA G+++KA LF + ++D++ W AMI+ V G ++AL +F +M+
Sbjct: 212 IISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQL 271
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
PD T+++LLT CA++G L+ G+ +H + VL G ALI+MY+KCG ++
Sbjct: 272 QRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKIDAVL-GTALIEMYSKCGHVD 330
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
+++++F M+ RD + W+ +I GLA +G A +++ +F EMQR K +P ITF+GVL AC
Sbjct: 331 KSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVLNACC 390
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------- 410
H G V+EG+++F+ M++ Y IEP I HY
Sbjct: 391 HGGLVDEGRRHFQAMKEIYQIEPRIEHYSCLVNLLGHAGLLYEAEKLIRDMPVNNDTMPL 450
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDY-VLLSNIYASRGEWNRVEKVRKLMD 460
+G+VE+ KR+ ++ D VL+SN+YA+ W +VR M
Sbjct: 451 FGALLTACKAYGNVEMSERLTKRIAKEDCSQNPDVNVLMSNVYATASRWEESIRVRSKMT 510
Query: 461 DSDIKKQPGCSLIEADD 477
+KK GCS+IE +
Sbjct: 511 HPAVKKTAGCSMIEVKE 527
>gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
Length = 547
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 154/471 (32%), Positives = 249/471 (52%), Gaps = 51/471 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I A +F KI + + +I ++ +A+ ++ ++++ ++P+++ VL
Sbjct: 77 GKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVL 136
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KAC L + G +H I+K E + +V ++LI +A G++ A +F+ A D+V
Sbjct: 137 KACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLV 196
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPV----RDLVSWNVMITGYAKQGEMEKANELFNEV 228
A +++ +GYA G A +L +EM V +LV+WN ++TG+++ GE E ELF E+
Sbjct: 197 ALNAMVSGYAHHGLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEEMVRELFKEM 256
Query: 229 P----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
+ DVVSW ++ISG+V N++A + F M + G P T+ SLL ACA +G+
Sbjct: 257 EANGIEPDVVSWTSVISGFVQNFRNEEAFDTFRRMLNAGFHPTSATISSLLPACASVGNG 316
Query: 285 EVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIG 343
GK++H L + GV K V AL+DMYAKCG A +F M +R+ +TW+++I
Sbjct: 317 RCGKEIHGHSLAL--GVEKDVYVRTALVDMYAKCGYFYEAKILFWRMSERNSATWNSMIF 374
Query: 344 GLAFHGFAEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G A HG+ E+I +F +M+ + + +TF +L AC+HAG V+ G+ F+LM+ +Y I
Sbjct: 375 GYANHGYCNEAIELFHQMKDDDEKKLDHLTFTAILTACAHAGLVDLGRSLFQLMQSKYGI 434
Query: 403 EPNIRHYGV---------------------------------------HGDVELGRLANK 423
P + HY HG++EL A K
Sbjct: 435 VPRVEHYACMVDVFGRAGKLAEAYDLIKTMPVKPDLYVWGALLGACRKHGEIELAEEAAK 494
Query: 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
L + G+ +LLS+IYA+ G W V K++K+M +KK PGCS IE
Sbjct: 495 HLSELEPGSVGNSLLLSDIYANAGSWGHVVKLKKMMKKRKMKKFPGCSWIE 545
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 112/199 (56%), Gaps = 2/199 (1%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
I YA G+++ A LF+++P+ + W +I Y CG +AL +F E++ G RP
Sbjct: 69 FIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPS 128
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+ + S+L AC L + G+K+H TL+ S + +ALIDMYAK G +E+A VF
Sbjct: 129 EYIIPSVLKACGHLSEKTTGRKLH-TLILKNSLESDAYVCSALIDMYAKSGEVEKARRVF 187
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
M +D+ + ++ G A HG AEE++ + EMQ L ++P +T+ ++ S G+ E
Sbjct: 188 ESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEE 247
Query: 388 EGKKYFKLMRDEYNIEPNI 406
++ FK M + IEP++
Sbjct: 248 MVRELFKEM-EANGIEPDV 265
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 158/403 (39%), Gaps = 84/403 (20%)
Query: 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
+++ C R N G +H +++ G I F+A CG + A +LFD + +
Sbjct: 34 LIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAKFIAFYAACGKIKDARILFDKIPRTN 93
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEM------PVR------------------------ 200
W L Y+R G A S+F E+ P
Sbjct: 94 PRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPSEYIIPSVLKACGHLSEKTTGRKLHT 153
Query: 201 ---------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
D + +I YAK GE+EKA +F + +D+V+ NAM+SGY G+ ++
Sbjct: 154 LILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHHGLAEE 213
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
AL + EEM+ +G +P+ VT +L+T + +G+ E M + K + N +
Sbjct: 214 ALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEE-----------MVRELFKEMEANGI- 261
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
+ DV +W+++I G + EE+ FR M PT
Sbjct: 262 --------------------EPDVVSWTSVISGFVQNFRNEEAFDTFRRMLNAGFHPTSA 301
Query: 372 TFVGVLVACSHAGKVEEGKKY------FKLMRDEYNIEPNIRHYGVHGDVELGRLANKRL 425
T +L AC+ G GK+ + +D Y +R V + G ++
Sbjct: 302 TISSLLPACASVGNGRCGKEIHGHSLALGVEKDVY-----VRTALVDMYAKCGYFYEAKI 356
Query: 426 LNMRKDESGDYVLLSNI--YASRGEWNRVEKVRKLMDDSDIKK 466
L R E S I YA+ G N ++ M D D KK
Sbjct: 357 LFWRMSERNSATWNSMIFGYANHGYCNEAIELFHQMKDDDEKK 399
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 142/463 (30%), Positives = 232/463 (50%), Gaps = 51/463 (11%)
Query: 66 TEPD--TFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRLLYR 121
PD T +N ++RG + DA+ L+ M + + P+ +T+ LK+C
Sbjct: 79 ASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGL 138
Query: 122 NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGY 181
+G +H + G + N FV +S I +A CG + A +F+ DVV+W+++ +G+
Sbjct: 139 VLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGF 198
Query: 182 ARRGELSMARSLFDEM-----PVRDLVSWNVMIT--GYAKQGEMEKANELFNEVPKRDVV 234
A G A +F E+ P D + ++ G A+ ++ +F+E+ + ++
Sbjct: 199 AHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLI 258
Query: 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294
SWNAM++ Y M+ +A+E+F M+ G PD VT+ ++L +C ++ L +GK++H +
Sbjct: 259 SWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIH-EV 317
Query: 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
+ + +L NAL+DMYA CG ++ A +VF M RDV +W+++I HG E+
Sbjct: 318 IKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREA 377
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410
I +F +M + P I FV +L ACSHAG ++ GK YF M E++I P + HY
Sbjct: 378 IDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVD 437
Query: 411 -----------------------------------VHGDVELGRLANKRLLNMRKDESGD 435
+H ++++G LA LL + ++G
Sbjct: 438 LLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGY 497
Query: 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
YVLLSNIYA G W V VR +M+ IKK PG S E D+
Sbjct: 498 YVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDR 540
>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Vitis vinifera]
Length = 1545
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 236/458 (51%), Gaps = 49/458 (10%)
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
PD F + ++I G AQ+ A+ L+ +M I+PN T + + AC L G +
Sbjct: 319 PDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMEL 378
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H VK G + V NSLI ++ G+L A +FD K DV W+S+ GY + G
Sbjct: 379 HSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYC 438
Query: 188 SMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVPK-----RDVVSWNA 238
A LF +M D+ V+WN MI+GY + G+ ++A +LF+ + K RD SWN+
Sbjct: 439 GKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNS 498
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
+I+GY+ G +AL +F +M+S RP+ VTMLS+L ACA+L + K++H +L
Sbjct: 499 LIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRN 558
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
G +++ N LID YAK G+I A +F G+ +D+ +W++LI G HG ++ ++ +F
Sbjct: 559 LG-SELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLF 617
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
+M ++ V+P+ TF+ ++ A S +G V++GK+ F M ++Y I P + H+
Sbjct: 618 DQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGR 677
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
+HG++ L A + LL + + +
Sbjct: 678 SGKLGEAIEFIEDMAIEPDSCIWAALLTASKIHGNIGLAIRAGECLLELEPSNFSIHQQI 737
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
+YA G++ V K+RK S+ K+ GCS IEA +
Sbjct: 738 LQMYALSGKFEDVSKLRKSEKRSETKQPLGCSWIEAKN 775
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 188/357 (52%), Gaps = 13/357 (3%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++ A K+F ++ E + + ++ +I ++ Q + V + M + I P++F +L
Sbjct: 133 GSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKIL 192
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+AC G +H +++ G FN V NS++ +A CG L+ A F+ D V
Sbjct: 193 QACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRV 252
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANEL---- 224
+W+S+ GY ++GEL + LF++M LV+WN++I Y++ G+ + A EL
Sbjct: 253 SWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKM 312
Query: 225 --FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
F VP DV +W +MISG+ QALE+F EM G P+ VT+ S ++ACA L
Sbjct: 313 ESFRIVP--DVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLK 370
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
L+ G ++H + + V +L GN+LIDMY+K G +E A VF + +DV TW+++I
Sbjct: 371 ALKKGMELHSVAVKIGC-VEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMI 429
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
GG G+ ++ +F +M V P +T+ ++ G ++ F M +
Sbjct: 430 GGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKD 486
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 108/199 (54%), Gaps = 2/199 (1%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+++ YAK G + +A ++F E+ +R++ +W+AMI Y M ++ ++ F M G PD
Sbjct: 125 LVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPD 184
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+ + +L AC + GD E GK +H ++ + N+++ +YAKCG + A F
Sbjct: 185 EFLLPKILQACGNCGDAETGKLIHSLVIRCGMNF-NIRVSNSILAVYAKCGRLSCARRFF 243
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
M RD +W+++I G G E+S +F +MQ + P +T+ ++ + S +GK +
Sbjct: 244 ENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCD 303
Query: 388 EGKKYFKLMRDEYNIEPNI 406
+ + K M + + I P++
Sbjct: 304 DAMELMKKM-ESFRIVPDV 321
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 138/335 (41%), Gaps = 86/335 (25%)
Query: 100 SIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF--EFNRFVRNSLIYFHANCGDLN 157
++KPN T+ +L++C +G +H +I G E N FV L+ +A CG L
Sbjct: 82 NVKPN--TYMQLLQSCIDQGSAELGRKLHARI---GLLEEMNPFVETKLVSMYAKCGSLG 136
Query: 158 TASVLFDGDAKMDVVAWSSLTAGYARR--------------------------------G 185
A +F + ++ AWS++ Y+R G
Sbjct: 137 EARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQACG 196
Query: 186 ELSMARS--LFDEMPVRDLVSWNVMITG-----YAKQGEMEKANELFNEVPKRDVVSWNA 238
A + L + +R +++N+ ++ YAK G + A F + RD VSWN+
Sbjct: 197 NCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNS 256
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
+I+GY G +++ ++FE+M+ G P VT
Sbjct: 257 IITGYCQKGELEKSHQLFEKMQEEGIEPGLVTW--------------------------- 289
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD----RDVSTWSTLIGGLAFHGFAEES 354
N LI+ Y++ G + A+E+ M DV TW+++I G A + ++
Sbjct: 290 ---------NILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQA 340
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389
+ +FREM + P +T + AC+ +++G
Sbjct: 341 LELFREMLLAGIEPNGVTVTSGISACASLKALKKG 375
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 13/224 (5%)
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC---TLLDMTSGVAKVLHGN 308
A+ + + G T + LL +C D G E+G+K+H L +M V
Sbjct: 69 AIACLDAIAQGGSNVKPNTYMQLLQSCIDQGSAELGRKLHARIGLLEEMNPFVE-----T 123
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
L+ MYAKCGS+ A +VF MR+R++ WS +IG + E + F M + P
Sbjct: 124 KLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVP 183
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKL-MRDEYNIEPNIRHYGVHGDVELGRLANKRLL- 426
E +L AC + G E GK L +R N + + + + GRL+ R
Sbjct: 184 DEFLLPKILQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFF 243
Query: 427 -NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469
NM + + + Y +GE + ++ + M + I +PG
Sbjct: 244 ENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGI--EPG 285
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 145/493 (29%), Positives = 239/493 (48%), Gaps = 75/493 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
++ A GF D+ L+ +++ G + A K+F ++ + ++N ++R
Sbjct: 66 RKAHAATLKTGFRWDAYTASSLMDMYTML--GRLEAARKVFDEMPQRAVVVWNMMLRCYV 123
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
+ +AV L +ME+ + P++ T L AC+R ++G +H +
Sbjct: 124 RCGRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYM---------- 173
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRD 201
DG + ++L Y + G L A +LF++MP R+
Sbjct: 174 ----------------------DGVTGFSLPVANALLDMYVKNGCLEEAVNLFEKMPSRN 211
Query: 202 LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS 261
+VSW +++GYA G+++KA LF++ ++D++ W AMI+ YV G +AL +F +M+
Sbjct: 212 VVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQM 271
Query: 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321
PD T+++LLT CA+LG L+ G+ +H + VL G ALIDMYAKCG +E
Sbjct: 272 HQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVL-GTALIDMYAKCGHVE 330
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
+++EVF M RD W+ +I GLA +G A ++ +F +M+R + +P +TF+GVL AC
Sbjct: 331 KSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVLSACC 390
Query: 382 HAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------------- 410
H G V+EG+K F+ M++ Y I P + HY
Sbjct: 391 HGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDEAEKLIKSIPINKDAMPL 450
Query: 411 ---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461
G+V++ KR+ +L+SN+YA+ W V +VR M
Sbjct: 451 FGALITACKAQGNVKMSERLTKRIGKQGYQIPDVNLLMSNVYATASRWEDVVRVRSKMAH 510
Query: 462 SDIKKQPGCSLIE 474
+KK GCSLIE
Sbjct: 511 PSVKKNAGCSLIE 523
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 140/456 (30%), Positives = 222/456 (48%), Gaps = 76/456 (16%)
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
I N FTF++ LKAC L G +H ++K G + F++NSL++F+ GD+++AS
Sbjct: 14 ISHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSAS 73
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR-------------------- 200
++FD DVV+W+S+ +G ++ G A S F M VR
Sbjct: 74 LIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMNVRPNSTTLVTALSTCSSLRCLK 133
Query: 201 ----------------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+++ N ++ Y + + A LF ++PKRDVVSW MI GY
Sbjct: 134 LGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYA 193
Query: 245 LCGMNKQALEMFEEMRSVGER-PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
G+ ++A+ +F+ M VGE P++ T++++L+AC+ + L +G+ VH + +
Sbjct: 194 QSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIID 253
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
GNALI+MY KCG++E AI +F +D+ +WST+I GLA +G +++ +F M
Sbjct: 254 GNVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLV 313
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
+ P ++TF+G+L ACSH G + +G F+ M+D YNI P +RHY
Sbjct: 314 HGISPDDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLD 373
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
+HG+ + + LL + G + LLSN YA
Sbjct: 374 EAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLGSKGVTVGTFALLSNTYA 433
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
WN VR M +KK G S IE D ++
Sbjct: 434 CCDRWNDANDVRVAMRSRGLKKMAGRSWIEMVDSSY 469
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 163/376 (43%), Gaps = 51/376 (13%)
Query: 21 LKQIQALVTINGFNSDSSALRELIYSGSV----VIPGAINYAHKMFVKITEPDTFMYNTI 76
L Q Q + I+ S L ++ S+ ++ G ++ A +F I +PD + +I
Sbjct: 31 LHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSI 90
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
I G ++ +A+ + M +++PN T L C+ L +G +HG ++
Sbjct: 91 ISGLSKLGFEKEALSKFLSM---NVRPNSTTLVTALSTCSSLRCLKLGKAIHGLRMRTLN 147
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E N + N+L+ F+ C L +A LF+ K DVV+W+++ GYA+ G A +F
Sbjct: 148 EENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQN 207
Query: 197 M-----------------------PVRDLVSW------------------NVMITGYAKQ 215
M L W N +I Y K
Sbjct: 208 MVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMYVKC 267
Query: 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275
G ME A +F +D+VSW+ +ISG + G+ KQA +F M G PDDVT L LL
Sbjct: 268 GNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGISPDDVTFLGLL 327
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
+AC+ G + G V + D+ + ++ H ++DMY K G ++ A E F+ +
Sbjct: 328 SACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEA-EAFIKEMPMEA 386
Query: 336 --STWSTLIGGLAFHG 349
W L+ HG
Sbjct: 387 EGPVWGALLHACQLHG 402
>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
Length = 735
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 153/525 (29%), Positives = 252/525 (48%), Gaps = 81/525 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
G ++ A ++F + + ++F ++T++ G A + +A L+ M E+C + ++F + V
Sbjct: 167 GIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAV 226
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A + L MG +HG IVK G V NSL+ +A G + A +F+ + +
Sbjct: 227 LSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNS 286
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG-------------------- 211
+ WS++ GYA+ GE A S+F +M G
Sbjct: 287 ITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGL 346
Query: 212 -------------------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
YAK G + A E F+++ + D+V W AM+SG+V G +++A
Sbjct: 347 MVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEA 406
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
L ++ M G P T+ S L ACA + LE GK++H ++ G+ + G+AL
Sbjct: 407 LTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPV-GSALST 465
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+KCG++E + VF + DRDV W+++I G + +G ++ +F EM+ P IT
Sbjct: 466 MYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNIT 525
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------------- 411
F+ +L ACSH G V+ G +YF LM +Y + P + HY
Sbjct: 526 FINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 585
Query: 412 ---HG---------------DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
HG D ++G A +RL+ + +S Y+LLSNIYAS+ +WN VE
Sbjct: 586 TIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVE 645
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLDT 498
+VR LM + K PGCS +E + + + ++ + P + N++
Sbjct: 646 RVRHLMRLRGVNKDPGCSWVELNSRVHV-FVVGEQQHPEAENINA 689
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 144/324 (44%), Gaps = 58/324 (17%)
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD--LNTASVLFDG--DAKMDVVAWSSLT- 178
G +H +K G + V NSLI F+++ L A +FD A DV +W+SL
Sbjct: 31 GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLLN 90
Query: 179 --AGYARRGELSMARSLFDE---MP----------------------------------V 199
+G+ LS RS+ +P V
Sbjct: 91 PLSGHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAV 150
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
++ ++ Y K G + A +F+ +P+R+ SW+ M++GY +++A ++F M
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210
Query: 260 --RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT-----LLDMTSGVAKVLHGNALID 312
E+ + V L LG L +G+++H LLD S N+L+
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLG-LLMGEQMHGLIVKDGLLDFVSV------ENSLVT 263
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MYAK G + A VF R+R+ TWS +I G A +G A+ +++MF +M PTE T
Sbjct: 264 MYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFT 323
Query: 373 FVGVLVACSHAGKVEEGKKYFKLM 396
FVGVL A S G + GK+ LM
Sbjct: 324 FVGVLNASSDLGALAVGKQAHGLM 347
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 227/466 (48%), Gaps = 74/466 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A ++ ++ E + + T++ Q N +AV LY+QM +PN FS VL
Sbjct: 326 GDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVL 385
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC L G +H + +K N FV ++LI + C L A ++F + ++V
Sbjct: 386 GACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIV 445
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
W+SL +GY+ ++ A LF +MP R++ SWN +I+GYA+ N F +
Sbjct: 446 CWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQ-------NRQFID----- 493
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
AL+ F M + G+ P ++T S+L ACA L LE+GK VH
Sbjct: 494 -------------------ALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHA 534
Query: 293 TLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
++ + G+ + + G AL DMYAK G ++ + VF M R+ W+ +I GLA +GFA
Sbjct: 535 KIIKL--GIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFA 592
Query: 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411
EESI +F +M + P E TF+ +L ACSH+G VE YF++M+ I P +HY
Sbjct: 593 EESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQ-ACGISPKAKHYTC 651
Query: 412 HGDV---------------------------------------ELGRLANKRLLNMRKDE 432
DV E+G A KRL + KD
Sbjct: 652 MVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDN 711
Query: 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ YVLLSN+YAS G+W ++R LM ++KK GCS ++ D+
Sbjct: 712 TAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRDE 757
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 170/370 (45%), Gaps = 64/370 (17%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++ A +++ + + +I G ++ P DA+ ++ +M C + PN+ T V+
Sbjct: 193 GSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVI 252
Query: 113 KACTRLLYRNMGFCVHGKIVKYGF-EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
KAC ++ + G +K + N VRNSLI
Sbjct: 253 KACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITL---------------------- 290
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231
Y R+G+ AR +FDEM VRD+VSW ++ YA+ G++E A + +E+P+R
Sbjct: 291 ---------YLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPER 341
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291
+ VSW +++ + G K+A+ ++ +M + G RP+ S+L ACA L DL G+K+H
Sbjct: 342 NEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIH 401
Query: 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA 351
L M V +ALIDMY KC + A +F + +++ W++LI G + +
Sbjct: 402 NQTLKMACS-NNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460
Query: 352 EESIAMFREMQRLKV-------------------------------RPTEITFVGVLVAC 380
E+ +F++M V P EITF VL+AC
Sbjct: 461 VEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520
Query: 381 SHAGKVEEGK 390
+ +E GK
Sbjct: 521 ASLCSLEMGK 530
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 122/250 (48%), Gaps = 31/250 (12%)
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
A+ + + + G++ AR LFD MP R +VS+ M+ K+G + A EL+ + P
Sbjct: 150 AYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCS 209
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE-----VG 287
V + AMI+G+VL + K AL +F EM S G P+++T++S++ AC G+ + VG
Sbjct: 210 VPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVG 269
Query: 288 KKVHCTLLDMTSGVAK--------------------------VLHGNALIDMYAKCGSIE 321
+ LLD GV V+ AL+D+YA+ G +E
Sbjct: 270 LAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLE 329
Query: 322 RAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS 381
A V M +R+ +W TL+ G A+E+++++ +M RP F VL AC+
Sbjct: 330 GARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACA 389
Query: 382 HAGKVEEGKK 391
+ G+K
Sbjct: 390 SLQDLRSGRK 399
>gi|224126355|ref|XP_002329533.1| predicted protein [Populus trichocarpa]
gi|222870242|gb|EEF07373.1| predicted protein [Populus trichocarpa]
Length = 693
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 147/466 (31%), Positives = 234/466 (50%), Gaps = 46/466 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G + A+ F +I E + + +I G + +A+ L+ +M++ S I PN TF +
Sbjct: 202 GDVREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRRSNIAPNGETFISL 261
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRF---VRNSLIYFHANCGDLNTASVLFDGDAK 168
AC + + ++G +H +++ G E+ + + SLI+ ++ G ++ A +F+ +
Sbjct: 262 AYACAGMRFHHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNLN 321
Query: 169 MDVV-AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
V + + + GY R G++ AR LFD +P RD ++W MI GY G + +A LF
Sbjct: 322 SHAVQSCNHMINGYTRIGQVEKARELFDTIPARDNITWTSMIVGYFDIGNVSEACYLFEN 381
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG 287
+P +D V+W +MISG V + +A M + G P T L A + L+ G
Sbjct: 382 MPDKDSVAWTSMISGLVQNELFLKATSFLLRMLAHGAPPLSSTYAILFGAAGAIAHLDFG 441
Query: 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
+++H L+ S +L N+LI MYAKCG I A +F M RD+ +W+T+I GLA
Sbjct: 442 RQLHNMLMKTLSDCDLIL-SNSLISMYAKCGEIHDAYSIFTNMIYRDLISWNTMIMGLAH 500
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
H A E++ +F M + RP +TF+G+L ACSHAG V +G K FK MRD Y I+P +
Sbjct: 501 HALANETLKVFETMLQSGTRPNSVTFLGILSACSHAGLVSQGCKLFKAMRDVYAIQPGLE 560
Query: 408 HY------------------------------------GVHG----DVELGRLANKRLLN 427
HY GV G + ++ + A +RLL
Sbjct: 561 HYISMINLLGRAGKVREAEELILGLPFETNHAIWGALLGVCGVAEKNADIAQHAARRLLE 620
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ + +V L NIYA+ G+ +K+RK M ++K PGCS I
Sbjct: 621 LDPLNAPAHVALCNIYAACGKHIEEQKLRKEMGLKGVRKVPGCSWI 666
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 163/334 (48%), Gaps = 55/334 (16%)
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
E N N ++ + CG L+ A LF+ + +VV+W+S+ G A G + AR LF E
Sbjct: 61 ERNIVSYNVMLSGYLQCGRLSEARGLFEEMPERNVVSWTSMLCGLADAGRICEARELFKE 120
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256
MP R++VSWN M+ G K ++E+A +F+E+P+++VVSWNAMI G+ G ++A +F
Sbjct: 121 MPERNVVSWNAMVAGLIKNEDLEEARRVFDEIPEKNVVSWNAMIKGFAENGKMEEARVLF 180
Query: 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316
EEM +D +++ T +I Y +
Sbjct: 181 EEM-------EDRNVITWTT---------------------------------MIAGYCR 200
Query: 317 CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVG 375
G + A F + +R+V +W+ +I G ++G+ E++ +F EM+R + P TF+
Sbjct: 201 IGDVREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRRSNIAPNGETFIS 260
Query: 376 VLVACS-----HAGKVEEGKKYFK-LMRDEYN--IEPNIRH-YGVHGDVELGRLANKRLL 426
+ AC+ H GK + L ++Y+ I ++ H Y + G ++ + L
Sbjct: 261 LAYACAGMRFHHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNL 320
Query: 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
N +S ++++ N Y G+ VEK R+L D
Sbjct: 321 NSHAVQSCNHMI--NGYTRIGQ---VEKARELFD 349
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 141/343 (41%), Gaps = 72/343 (20%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A +F ++ E + + +++ G A + +A L+ +M P + S+
Sbjct: 78 GRLSEARGLFEEMPERNVVSWTSMLCGLADAGRICEARELFKEM------PERNVVSW-- 129
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A L +N ++ E N N++I A G + A VLF+ +V+
Sbjct: 130 NAMVAGLIKNEDLEEARRVFDEIPEKNVVSWNAMIKGFAENGKMEEARVLFEEMEDRNVI 189
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
W+++ AGY R G++ A F +P R++VSW MI+G+ G +A LF E+ +R
Sbjct: 190 TWTTMIAGYCRIGDVREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRRS 249
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
++ P+ T +SL ACA + +GK++H
Sbjct: 250 NIA------------------------------PNGETFISLAYACAGMRFHHLGKQLHA 279
Query: 293 TLL-------DMTSGVAKVL-----------------------HG----NALIDMYAKCG 318
L+ D +AK L H N +I+ Y + G
Sbjct: 280 QLIINGLEYEDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNLNSHAVQSCNHMINGYTRIG 339
Query: 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+E+A E+F + RD TW+++I G G E+ +F M
Sbjct: 340 QVEKARELFDTIPARDNITWTSMIVGYFDIGNVSEACYLFENM 382
>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
Length = 629
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 153/525 (29%), Positives = 252/525 (48%), Gaps = 81/525 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFV 111
G ++ A ++F + + ++F ++T++ G A + +A L+ M E+C + ++F + V
Sbjct: 61 GIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAV 120
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A + L MG +HG IVK G V NSL+ +A G + A +F+ + +
Sbjct: 121 LSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNS 180
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG-------------------- 211
+ WS++ GYA+ GE A S+F +M G
Sbjct: 181 ITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGL 240
Query: 212 -------------------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252
YAK G + A E F+++ + D+V W AM+SG+V G +++A
Sbjct: 241 MVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEA 300
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312
L ++ M G P T+ S L ACA + LE GK++H ++ G+ + G+AL
Sbjct: 301 LTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPV-GSALST 359
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+KCG++E + VF + DRDV W+++I G + +G ++ +F EM+ P IT
Sbjct: 360 MYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNIT 419
Query: 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------------- 411
F+ +L ACSH G V+ G +YF LM +Y + P + HY
Sbjct: 420 FINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 479
Query: 412 ---HG---------------DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453
HG D ++G A +RL+ + +S Y+LLSNIYAS+ +WN VE
Sbjct: 480 TIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVE 539
Query: 454 KVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLDT 498
+VR LM + K PGCS +E + + + ++ + P + N++
Sbjct: 540 RVRHLMRLRGVNKDPGCSWVELNSRVHV-FVVGEQQHPEAENINA 583
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM--RSVGERPDDV 269
Y K G + A +F+ +P+R+ SW+ M++GY +++A ++F M E+ + V
Sbjct: 57 YCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFV 116
Query: 270 TMLSLLTACADLGDLEVGKKVHCT-----LLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
L LG L +G+++H LLD S N+L+ MYAK G + A
Sbjct: 117 ATAVLSAVSVPLG-LLMGEQMHGLIVKDGLLDFVS------VENSLVTMYAKAGCMGAAF 169
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
VF R+R+ TWS +I G A +G A+ +++MF +M PTE TFVGVL A S G
Sbjct: 170 HVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLG 229
Query: 385 KVEEGKKYFKLM 396
+ GK+ LM
Sbjct: 230 ALAVGKQAHGLM 241
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
H + S V+ V +L++MY K G + A VF GM R+ +WST++ G A
Sbjct: 34 HALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKC 93
Query: 351 AEESIAMFREM-QRLKVRPTEITFVGVLVACS 381
+EE+ +FR M + +E VL A S
Sbjct: 94 SEEAFDLFRLMLEECPSEKSEFVATAVLSAVS 125
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 194/372 (52%), Gaps = 48/372 (12%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
NSL+ HA + A LF V+W+++ Y G++S AR +FD+MP RD
Sbjct: 152 NSLLCAHARLASVPDAESLFAAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMPTRDST 211
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SW+V+I GY K G M A E+F+ +P +++V+W AMI+GY G+ K++L +F EM + G
Sbjct: 212 SWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAG 271
Query: 264 ERPDDVTMLSLLTACADLGDLE----VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
PD TM+ +++A + +G E VG V ++ KVL AL+DM+AKCG+
Sbjct: 272 IEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERND---KVL--TALVDMHAKCGN 326
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
++ A+ F + D ++ LI GLA HG A+ ++ +F MQ V P ITFVGVL A
Sbjct: 327 VDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTA 386
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSHAG V++G Y++ M Y +E HY
Sbjct: 387 CSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPG 446
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
HG+VE+ + +L + +G+Y++LSNIYA + +W E++R +M
Sbjct: 447 ALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQWEEAERIRSVMR 506
Query: 461 DSDIKKQPGCSL 472
KQPG S+
Sbjct: 507 TRVPFKQPGSSM 518
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 9/182 (4%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N ++ YAK ++ A+ ++ D VS+N+++ + A +F M S +
Sbjct: 121 NALVDLYAKCDDLPAAHTALADIAAPDAVSFNSLLCAHARLASVPDAESLFAAMPSRTQ- 179
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
V+ +++ + GD+ ++V + S V LI Y KCGS+ A E
Sbjct: 180 ---VSWNAMVVVYVNAGDVSSARRVFDQMPTRDSTSWSV-----LIVGYCKCGSMRSARE 231
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
VF M +++ W+ +I G A G +ES+A+FREM+ + P T VGV+ A S G
Sbjct: 232 VFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGS 291
Query: 386 VE 387
E
Sbjct: 292 TE 293
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 122/265 (46%), Gaps = 34/265 (12%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G++ A ++F ++ + + +I G AQS P +++ L+ +ME I+P+ T V+
Sbjct: 224 GSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVI 283
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A +++ + V + K E N V +L+ HA CG+++ A F A+ D
Sbjct: 284 SAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAY 343
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+++L +G A G +A +F+ M + D +++ ++T + G ++K +
Sbjct: 344 PYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDY---- 399
Query: 229 PKRDVVSWNAMISGYVLCGMNKQA----------------LEMFEEMRSVGERPDDVTML 272
W AM+ Y GM ++A E FE ++++ P +
Sbjct: 400 -------WEAMVKYY---GMERRADHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPGALG 449
Query: 273 SLLTACADLGDLEVGKKVHCTLLDM 297
+LL+AC G++E+ + V L ++
Sbjct: 450 ALLSACKTHGNVEIAEIVANKLFEL 474
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD ++ L A A L L +G +H L + ++ NAL+D+YAKC + A
Sbjct: 79 PDHFSLPFALNAAASLRLLPLGASLHALALRLALLPGRLPVANALVDLYAKCDDLPAAHT 138
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+ D ++++L+ A ++ ++F M T++++ ++V +AG
Sbjct: 139 ALADIAAPDAVSFNSLLCAHARLASVPDAESLFAAMPSR----TQVSWNAMVVVYVNAGD 194
Query: 386 VEEGKKYFKLM 396
V ++ F M
Sbjct: 195 VSSARRVFDQM 205
>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Cucumis sativus]
Length = 611
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 146/496 (29%), Positives = 249/496 (50%), Gaps = 81/496 (16%)
Query: 23 QIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGS 80
++ + + GF+ S L +Y +IP A+ ++F ++ D + +I+
Sbjct: 24 ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQAL----QLFDEMPNRDHVSWASILTAH 79
Query: 81 AQSQNPLDAV-FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN 139
++ P + L T ++P+ F F+ +++AC+ L Y +G VH + + F +
Sbjct: 80 NKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDD 139
Query: 140 RFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV 199
V++SLI + CG + A R++FD +
Sbjct: 140 EVVKSSLIDMYTKCGQPDDA-------------------------------RAVFDSILF 168
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
++ VSW MI+GYA+ G +A +LF + P R++ SW A+ISG + G + +F EM
Sbjct: 169 KNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEM 228
Query: 260 RSVG-ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKC 317
R G + D + + S++ CA+L LE+GK++H ++ + G L NAL+DMYAKC
Sbjct: 229 RREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIAL--GFESCLFISNALVDMYAKC 286
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
I A ++F M +DV +W+++I G A HG AEE++ ++ EM +++P E+TFVG+L
Sbjct: 287 SDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLL 346
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV-------------------------- 411
ACSHAG V G++ F+ M +Y+I P+++HY
Sbjct: 347 YACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPD 406
Query: 412 -------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
H ++E+G R+L+++ ++ Y+LLSN+YA W V KVRKL
Sbjct: 407 EPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKL 466
Query: 459 MDDSDIKKQPGCSLIE 474
M +++K+PG S I+
Sbjct: 467 MSSMEVRKEPGYSSID 482
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,576,833,609
Number of Sequences: 23463169
Number of extensions: 305253150
Number of successful extensions: 866625
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7675
Number of HSP's successfully gapped in prelim test: 3871
Number of HSP's that attempted gapping in prelim test: 669577
Number of HSP's gapped (non-prelim): 68952
length of query: 498
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 351
effective length of database: 8,910,109,524
effective search space: 3127448442924
effective search space used: 3127448442924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)