BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041942
(498 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 295/537 (54%), Positives = 383/537 (71%), Gaps = 45/537 (8%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+RT R +LW+ C N+RTLKQI A + +NG S+ S + ELIYS S+ +PGA+ YAHK
Sbjct: 8 DRTTNRRRPKLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHK 67
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I +PD + N ++RGSAQS P V LYT+MEK + P+++TF+FVLKAC++L +
Sbjct: 68 LFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEW 127
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
R+ GF HGK+V++GF N +V+N+LI FHANCGDL AS LFD AK VAWSS+T+G
Sbjct: 128 RSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSG 187
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+RG++ A LFDEMP +D V+WNVMITG K EM+ A ELF+ ++DVV+WNAMI
Sbjct: 188 YAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMI 247
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
SGYV CG K+AL +F+EMR GE PD VT+LSLL+ACA LGDLE GK++H +L+ S
Sbjct: 248 SGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASV 307
Query: 301 VAKVLHG----NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ + G NALIDMYAKCGSI+RAIEVF G++DRD+STW+TLI GLA H AE SI
Sbjct: 308 SSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIE 366
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
MF EMQRLKV P E+TF+GV++ACSH+G+V+EG+KYF LMRD YNIEPNI+HYG
Sbjct: 367 MFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDML 426
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
++G+VELG+ AN++LL+MRKDESGDYV
Sbjct: 427 GRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYV 486
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA-DDKAFLQYLFNLKPKPNS 493
LLSNIYAS G+W+ V+KVRK+ DD+ +KK G SLIE DDK ++YL + +P+ S
Sbjct: 487 LLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDDKLMMRYLLSSEPESRS 543
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 184/510 (36%), Positives = 279/510 (54%), Gaps = 42/510 (8%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H L C NLR L QI L G ++DS +LI ++ I A+ YA ++ +
Sbjct: 6 HHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCF 65
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMG 124
EPD FM+NT++RG ++S P ++V ++ +M K + P+ F+F+FV+KA G
Sbjct: 66 PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 125
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
F +H + +K+G E + FV +LI + CG + A +FD + ++VAW+++ R
Sbjct: 126 FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+++ AR +FD+M VR+ SWNVM+ GY K GE+E A +F+E+P RD VSW+ MI G
Sbjct: 186 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 245
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G ++ F E++ G P++V++ +L+AC+ G E GK +H ++ V
Sbjct: 246 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILH-GFVEKAGYSWIV 304
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
NALIDMY++CG++ A VF GM++ R + +W+++I GLA HG EE++ +F EM
Sbjct: 305 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTA 364
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------ 411
V P I+F+ +L ACSHAG +EEG+ YF M+ Y+IEP I HYG
Sbjct: 365 YGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQ 424
Query: 412 ---------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
HG++EL +RL + + SGD VLLSN YA
Sbjct: 425 KAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYA 484
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ G+W V +RK M IKK SL+E
Sbjct: 485 TAGKWKDVASIRKSMIVQRIKKTTAWSLVE 514
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 195/583 (33%), Positives = 287/583 (49%), Gaps = 113/583 (19%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG--AINYAHKMFV 63
H S L C L++L+ I A + G ++ + AL +LI ++ P + YA +F
Sbjct: 34 HPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLI-EFCILSPHFEGLPYAISVFK 92
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
I EP+ ++NT+ RG A S +P+ A+ LY M + PN +TF FVLK+C +
Sbjct: 93 TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKE 152
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFH-------------------------------AN 152
G +HG ++K G + + +V SLI + A+
Sbjct: 153 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYAS 212
Query: 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF----------DEMPVRDL 202
G + A LFD DVV+W+++ +GYA G A LF DE + +
Sbjct: 213 RGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 272
Query: 203 VS----------------W-------------NVMITGYAKQGEMEKANELFNEVPKRDV 233
VS W N +I Y+K GE+E A LF +P +DV
Sbjct: 273 VSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDV 332
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
+SWN +I GY + K+AL +F+EM GE P+DVTMLS+L ACA LG +++G+ +H
Sbjct: 333 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY 392
Query: 294 LLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ GV +LIDMYAKCG IE A +VF + + +S+W+ +I G A HG A+
Sbjct: 393 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRAD 452
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
S +F M+++ ++P +ITFVG+L ACSH+G ++ G+ F+ M +Y + P + HYG
Sbjct: 453 ASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCM 512
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG+VELG + L+ + +
Sbjct: 513 IDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENP 572
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YVLLSNIYAS G WN V K R L++D +KK PGCS IE D
Sbjct: 573 GSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 98/431 (22%), Positives = 172/431 (39%), Gaps = 58/431 (13%)
Query: 22 KQIQALVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRG 79
+Q+ + +GF S+ + LI YS G + A +F ++ D +NT+I G
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKC----GELETACGLFERLPYKDVISWNTLIGG 341
Query: 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY--GFE 137
+A+ L+ +M + PN T +L AC L ++G +H I K G
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVT 401
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+R SLI +A CGD+ A +F+ + +W+++ G+A G + LF M
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRM 461
Query: 198 P----VRDLVSWNVMITGYAKQGEMEKANELFNEV-------PKRDVVSWNAMISGYVLC 246
D +++ +++ + G ++ +F + PK + + MI L
Sbjct: 462 RKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLE--HYGCMID---LL 516
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM--TSGVAKV 304
G + E E + + PD V SLL AC G++E+G+ L+ + + + V
Sbjct: 517 GHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYV 576
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDV------------STWSTLIGGLAFHGFAE 352
L L ++YA G + + D+ + S I G FH
Sbjct: 577 L----LSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNR 632
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH 412
E M EM+ V AG V + + + M +E+ E +RH+
Sbjct: 633 EIYGMLEEME---------------VLLEKAGFVPDTSEVLQEMEEEWK-EGALRHHSEK 676
Query: 413 GDVELGRLANK 423
+ G ++ K
Sbjct: 677 LAIAFGLISTK 687
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 310 bits (793), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/497 (35%), Positives = 275/497 (55%), Gaps = 76/497 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
K+I A + I+G + S + +++ + ++YA ++F +++ P+ F+YN+IIR
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDKI--EDMDYATRLFNQVSNPNVFLYNSIIRAYT 84
Query: 82 QSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
+ D + +Y Q+ + S + P++FTF F+ K+C L +G VHG + K+G F+
Sbjct: 85 HNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHV 144
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
N+LI D+ Y + +L A +FDEM R
Sbjct: 145 VTENALI-------DM------------------------YMKFDDLVDAHKVFDEMYER 173
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D++SWN +++GYA+ G+M+KA LF+ + + +VSW AMISGY G +A++ F EM+
Sbjct: 174 DVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQ 233
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGS 319
G PD+++++S+L +CA LG LE+GK +H L G K NALI+MY+KCG
Sbjct: 234 LAGIEPDEISLISVLPSCAQLGSLELGKWIH--LYAERRGFLKQTGVCNALIEMYSKCGV 291
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I +AI++F M +DV +WST+I G A+HG A +I F EMQR KV+P ITF+G+L A
Sbjct: 292 ISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSA 351
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSH G +EG +YF +MR +Y IEP I HYG
Sbjct: 352 CSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSK 411
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
G++++ +A L+ + ++ G+YVLL+NIYA G+W V ++RK++
Sbjct: 412 IWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIR 471
Query: 461 DSDIKKQPGCSLIEADD 477
+ ++KK PG SLIE ++
Sbjct: 472 NENMKKTPGGSLIEVNN 488
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 308 bits (789), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 187/507 (36%), Positives = 277/507 (54%), Gaps = 64/507 (12%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIY--SGSVVIPGAINYAHKMFVKITEPDTFM 72
C +R L QI A+ +G D+ A E++ + S + ++YAHK+F ++ + + F
Sbjct: 33 CRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFS 92
Query: 73 YNTIIRGSAQSQNP---LDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+NTIIRG ++S + Y M ++PN+FTF VLKAC + G +HG
Sbjct: 93 WNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHG 152
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-KMDVVAWSSLTAGYARRGELS 188
+KYGF + FV ++L+ + CG + A VLF + + D+V +T R GE+
Sbjct: 153 LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV---MTDRRKRDGEI- 208
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
V WNVMI GY + G+ + A LF+++ +R VVSWN MISGY L G
Sbjct: 209 --------------VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
K A+E+F EM+ RP+ VT++S+L A + LG LE+G+ +H D + VL G+
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVL-GS 313
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
ALIDMY+KCG IE+AI VF + +V TWS +I G A HG A ++I F +M++ VRP
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
+++ ++ +L ACSH G VEEG++YF M +EP I HYG
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+ G+VE+G+ L++M +SG YV LSN+YAS+G W
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ V ++R M + DI+K PGCSLI+ D
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDID 520
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 308 bits (789), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 178/508 (35%), Positives = 270/508 (53%), Gaps = 78/508 (15%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
NL+TLKQ + I G N D+ + + I + S G + YA+ +F P+T+++NT+
Sbjct: 27 NLKTLKQSHCYMIITGLNRDNLNVAKFIEACSN--AGHLRYAYSVFTHQPCPNTYLHNTM 84
Query: 77 IRGSAQSQNPLD---AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
IR + P A+ +Y ++ KP+ FTF FVLK R+ G +HG++V
Sbjct: 85 IRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVV 144
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+GF+ + V LI + +CG L GDA R +
Sbjct: 145 FGFDSSVHVVTGLIQMYFSCGGL--------GDA-----------------------RKM 173
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP--KRDVVSWNAMISGYVLCGMNKQ 251
FDEM V+D+ WN ++ GY K GEM++A L +P R+ VSW +ISGY G +
Sbjct: 174 FDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASE 233
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
A+E+F+ M PD+VT+L++L+ACADLG LE+G+++ C+ +D V NA+I
Sbjct: 234 AIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERI-CSYVDHRGMNRAVSLNNAVI 292
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DMYAK G+I +A++VF + +R+V TW+T+I GLA HG E++AMF M + VRP ++
Sbjct: 293 DMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDV 352
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TF+ +L ACSH G V+ GK+ F MR +Y I PNI HYG
Sbjct: 353 TFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKS 412
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
VH D+ELG A L+ + + SG+Y+LL+N+Y++ G W+
Sbjct: 413 MPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDES 472
Query: 453 EKVRKLMDDSDIKKQPGCSLIEADDKAF 480
+R +M +KK G S IE +++ +
Sbjct: 473 RMMRNMMKGIGVKKMAGESSIEVENRVY 500
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/489 (34%), Positives = 264/489 (53%), Gaps = 44/489 (8%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
++ +L ++Q A + G D+ SA + + ++ + P ++YAH + +I P+ F
Sbjct: 47 ERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGF 106
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+N++IR A S P A+ ++ +M + P+K++F+FVLKAC G +HG
Sbjct: 107 THNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLF 166
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+K G + FV N+L+ + G A + D D V+W+SL + Y +G + AR
Sbjct: 167 IKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEAR 226
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+LFDEM R++ SWN MI+GYA G +++A E+F+ +P RDVVSWNAM++ Y G +
Sbjct: 227 ALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNE 286
Query: 252 ALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
LE+F +M E+PD T++S+L+ACA LG L G+ VH +D + AL
Sbjct: 287 VLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVH-VYIDKHGIEIEGFLATAL 345
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMY+KCG I++A+EVF RDVSTW+++I L+ HG ++++ +F EM +P
Sbjct: 346 VDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNG 405
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLAN-------- 422
ITF+GVL AC+H G +++ +K F++M Y +EP I HYG D+ LGR+
Sbjct: 406 ITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDL-LGRMGKIEEAEELV 464
Query: 423 --------------------------------KRLLNMRKDESGDYVLLSNIYASRGEWN 450
RLL + +S Y +SN+YAS G W
Sbjct: 465 NEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWE 524
Query: 451 RVEKVRKLM 459
+V R+ M
Sbjct: 525 KVIDGRRNM 533
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 305 bits (781), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 181/595 (30%), Positives = 289/595 (48%), Gaps = 114/595 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +KC L LKQIQA + ING D A LI ++ ++Y+ K+ I P+
Sbjct: 59 LLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNI 118
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEK---CSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
F +N IRG ++S+NP ++ LY QM + C +P+ FT+ + K C L ++G +
Sbjct: 119 FSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMI 178
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
G ++K E V N+ I+ A+CGD+ A +FD D+V+W+ L GY + GE
Sbjct: 179 LGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEA 238
Query: 188 SMARSLF----------DEMPVRDLVS-----------------------------WNVM 208
A ++ D++ + LVS N +
Sbjct: 239 EKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNAL 298
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM-------------------- 248
+ ++K G++ +A +F+ + KR +VSW MISGY CG+
Sbjct: 299 MDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWN 358
Query: 249 -----------NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
+ AL +F+EM++ +PD++TM+ L+AC+ LG L+VG +H ++
Sbjct: 359 AMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIH-RYIEK 417
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
S V G +L+DMYAKCG+I A+ VF G++ R+ T++ +IGGLA HG A +I+
Sbjct: 418 YSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISY 477
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------ 411
F EM + P EITF+G+L AC H G ++ G+ YF M+ +N+ P ++HY +
Sbjct: 478 FNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLG 537
Query: 412 ---------------------------------HGDVELGRLANKRLLNMRKDESGDYVL 438
HG+VELG A K+LL + +SG YVL
Sbjct: 538 RAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVL 597
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
L +Y W ++ R++M++ ++K PGCS IE + +++ K +P S
Sbjct: 598 LDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNG-IVCEFIVRDKSRPES 651
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 301 bits (772), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 176/510 (34%), Positives = 257/510 (50%), Gaps = 72/510 (14%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMF 62
N + + ++C+ LKQI A + G DS A+ + + + S + YA +F
Sbjct: 13 NLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVF 72
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
PDTF++N +IRG + S P ++ LY +M S N +TF +LKAC+ L
Sbjct: 73 DGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFE 132
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
+H +I K G+E DV A +SL YA
Sbjct: 133 ETTQIHAQITKLGYE-------------------------------NDVYAVNSLINSYA 161
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
G +A LFD +P D VSWN +I GY K G+M+ A LF ++ +++ +SW MISG
Sbjct: 162 VTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISG 221
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
YV MNK+AL++F EM++ PD+V++ + L+ACA LG LE GK +H L +
Sbjct: 222 YVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMD 281
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
VL G LIDMYAKCG +E A+EVF ++ + V W+ LI G A+HG E+I+ F EMQ
Sbjct: 282 SVL-GCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ 340
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------ 410
++ ++P ITF VL ACS+ G VEEGK F M +YN++P I HYG
Sbjct: 341 KMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLL 400
Query: 411 ---------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
+H ++ELG + L+ + G YV +NI+
Sbjct: 401 DEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIH 460
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
A +W++ + R+LM + + K PGCS I
Sbjct: 461 AMDKKWDKAAETRRLMKEQGVAKVPGCSTI 490
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 301 bits (772), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 177/558 (31%), Positives = 289/558 (51%), Gaps = 80/558 (14%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KC NL +KQ+ A + + D +LI + S+ N A ++F ++ EP+ +
Sbjct: 28 KCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLC--RQTNLAVRVFNQVQEPNVHLC 85
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
N++IR AQ+ P A F++++M++ + + FT+ F+LKAC+ + + +H I K
Sbjct: 86 NSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEK 145
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNT--ASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
G + +V N+LI ++ CG L A LF+ ++ D V+W+S+ G + GEL AR
Sbjct: 146 LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDAR 205
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM------------ 239
LFDEMP RDL+SWN M+ GYA+ EM KA ELF ++P+R+ VSW+ M
Sbjct: 206 RLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEM 265
Query: 240 ---------------------ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
I+GY G+ K+A + ++M + G + D ++S+L AC
Sbjct: 266 ARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAAC 325
Query: 279 ADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
+ G L +G ++H L G A VL NAL+DMYAKCG++++A +VF + +D+ +
Sbjct: 326 TESGLLSLGMRIHSILKRSNLGSNAYVL--NALLDMYAKCGNLKKAFDVFNDIPKKDLVS 383
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+T++ GL HG +E+I +F M+R +RP ++TF+ VL +C+HAG ++EG YF M
Sbjct: 384 WNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSME 443
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
Y++ P + HYG +H +V++
Sbjct: 444 KVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIA 503
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ L+ + + G+Y LLSNIYA+ +W V +R M ++K G S +E +D
Sbjct: 504 KEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDG 563
Query: 479 AFLQYLFNLKPKPNSGNL 496
+F+ K P S +
Sbjct: 564 IHEFTVFD-KSHPKSDQI 580
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDR 333
L CA+L + K++H ++ + + LH LI + C A+ VF +++
Sbjct: 26 LPKCANLNQV---KQLHAQII--RRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEP 80
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF 393
+V ++LI A + ++ +F EMQR + T+ +L ACS G+ +
Sbjct: 81 NVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACS-------GQSWL 133
Query: 394 KLMRDEYNIEPNIRHYGVHGDV 415
+++ +N +I G+ D+
Sbjct: 134 PVVKMMHN---HIEKLGLSSDI 152
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 172/505 (34%), Positives = 271/505 (53%), Gaps = 76/505 (15%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
+C+ +R LKQI A + G SD+ +A R L + + P +NYA+ +F +I + F+
Sbjct: 34 QCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCAS--PSDMNYAYLVFTRINHKNPFV 91
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
+NTIIRG ++S P A+ ++ M S+KP + T+ V KA RL G +HG
Sbjct: 92 WNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGM 151
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++K G E + F+RN++++ + CG L A +F G DVVAW+S+ G+A+ G + A
Sbjct: 152 VIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQA 211
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
++LFDEMP R+ VSWN MI+G+ + G + A ++F E+ ++DV
Sbjct: 212 QNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDV----------------- 254
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+PD TM+SLL ACA LG E G+ +H ++ + ++ AL
Sbjct: 255 --------------KPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVV-TAL 299
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMY KCG IE + VF + +S W+++I GLA +GF E ++ +F E++R + P
Sbjct: 300 IDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDS 359
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH------------------ 412
++F+GVL AC+H+G+V ++F+LM+++Y IEP+I+HY +
Sbjct: 360 VSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIK 419
Query: 413 ---------------------GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
G+VE+ + A K L + DE+ YVLLSN YAS G +
Sbjct: 420 NMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEE 479
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEAD 476
+ R LM + ++K+ GCS IE D
Sbjct: 480 AVEQRLLMKERQMEKEVGCSSIEVD 504
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 293 bits (751), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 169/518 (32%), Positives = 267/518 (51%), Gaps = 76/518 (14%)
Query: 5 RHRSSRLWKKCTNLRTLKQIQALVTINGFNSD---SSALRELIYSGSVV--IPGAINYAH 59
+H L + C++ LK I + SD +S L L S + YA+
Sbjct: 12 KHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAY 71
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
+F +I P+ F++N +IR + P A YTQM K I P+ TF F++KA + +
Sbjct: 72 GIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEME 131
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
+G H +IV++GF+ + +V NSL++ +ANCG + A +F DVV+W+S+ A
Sbjct: 132 CVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVA 191
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
GY + G + AR +FDEMP R+L +W++MI GYAK EK
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEK------------------- 232
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
A+++FE M+ G ++ M+S++++CA LG LE G++ + ++
Sbjct: 233 ------------AIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359
V +L G AL+DM+ +CG IE+AI VF G+ + D +WS++I GLA HG A +++ F
Sbjct: 281 TVNLIL-GTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFS 339
Query: 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------- 410
+M L P ++TF VL ACSH G VE+G + ++ M+ ++ IEP + HYG
Sbjct: 340 QMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRA 399
Query: 411 ------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLS 440
++ + E+ L+ ++ + SG YVLLS
Sbjct: 400 GKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLS 459
Query: 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
NIYA G+W+++E +R +M + +KK PG SLIE D K
Sbjct: 460 NIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGK 497
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 162/526 (30%), Positives = 284/526 (53%), Gaps = 48/526 (9%)
Query: 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPD 69
++ K+C+ + L+ A + N D + + I + + ++ A ++ EP+
Sbjct: 33 KIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSF--KRLDLAVSTMTQMQEPN 90
Query: 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F+YN + +G +P+ ++ LY +M + S+ P+ +T+S ++KA + G +
Sbjct: 91 VFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASS--FASRFGESLQA 148
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
I K+GF F+ ++ +LI F++ G + A +FD + D +AW+++ + Y R ++
Sbjct: 149 HIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDS 208
Query: 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMN 249
A SL ++M ++ + N +I GY G +E+A LFN++P +D++SW MI GY
Sbjct: 209 ANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRY 268
Query: 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309
++A+ +F +M G PD+VTM ++++ACA LG LE+GK+VH L V V G+A
Sbjct: 269 REAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQ-NGFVLDVYIGSA 327
Query: 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369
L+DMY+KCGS+ERA+ VF + +++ W+++I GLA HGFA+E++ MF +M+ V+P
Sbjct: 328 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 387
Query: 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------- 410
+TFV V AC+HAG V+EG++ ++ M D+Y+I N+ HYG
Sbjct: 388 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 447
Query: 411 --------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450
+H ++ + +A +L+ + SG Y LL ++YA + W
Sbjct: 448 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWR 507
Query: 451 RVEKVRKLMDDSDIKKQ-PGCSLIEADDKAFLQYLFNLKPKPNSGN 495
V ++R M + I+K PG S I D + +LF K +S +
Sbjct: 508 DVAEIRGRMRELGIEKICPGTSSIRIDKR---DHLFAAADKSHSAS 550
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 292 bits (747), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 181/588 (30%), Positives = 282/588 (47%), Gaps = 116/588 (19%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
N +RH S L ++C +LR LKQ + G SD + +L ++ ++ YA K
Sbjct: 28 NERSRHIS--LIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARK 85
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLL 119
+F +I +P++F +NT+IR A +P+ +++ + M + PNK+TF F++KA +
Sbjct: 86 VFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVS 145
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
++G +HG VK + FV NSLI+ + +CGDL++A +F + DVV+W+S+
Sbjct: 146 SLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMIN 205
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITG---------------------------- 211
G+ ++G A LF +M D+ + +V + G
Sbjct: 206 GFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNV 265
Query: 212 -----------YAKQGEMEKANELF-------------------------------NEVP 229
Y K G +E A LF N +P
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDDVTMLSLLTACADLGDLEVGK 288
++D+V+WNA+IS Y G +AL +F E++ + + +T++S L+ACA +G LE+G+
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385
Query: 289 KVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAF 347
+H + G+ H +ALI MY+KCG +E++ EVF + RDV WS +IGGLA
Sbjct: 386 WIHSYI--KKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443
Query: 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407
HG E++ MF +MQ V+P +TF V ACSH G V+E + F M Y I P +
Sbjct: 444 HGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEK 503
Query: 408 HYG---------------------------------------VHGDVELGRLANKRLLNM 428
HY +H ++ L +A RLL +
Sbjct: 504 HYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLEL 563
Query: 429 RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G +VLLSNIYA G+W V ++RK M + +KK+PGCS IE D
Sbjct: 564 EPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEID 611
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 171/507 (33%), Positives = 264/507 (52%), Gaps = 77/507 (15%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
+ + C N+ + I A + + D+ + ELI S + +++YA+ +F ++ P+
Sbjct: 35 VLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTL--DSVDYAYDVFSYVSNPNV 92
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++Y +I G S D V LY +M S+ P+ + + VLKAC + R +H +
Sbjct: 93 YLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCRE----IHAQ 148
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
++K GF +R V G M++ Y + GEL A
Sbjct: 149 VLKLGFGSSRSV----------------------GLKMMEI---------YGKSGELVNA 177
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
+ +FDEMP RD V+ VMI Y++ G +++A ELF +V +D V W AMI G V
Sbjct: 178 KKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMN 237
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+ALE+F EM+ ++ T + +L+AC+DLG LE+G+ VH + + ++ + GNAL
Sbjct: 238 KALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFV-GNAL 296
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
I+MY++CG I A VF MRD+DV +++T+I GLA HG + E+I FR+M RP +
Sbjct: 297 INMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQ 356
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
+T V +L ACSH G ++ G + F M+ +N+EP I HYG
Sbjct: 357 VTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIE 416
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+HG++ELG KRL +SG YVLLSN+YAS G+W
Sbjct: 417 NIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKE 476
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEADDK 478
++R+ M DS I+K+PGCS IE D++
Sbjct: 477 STEIRESMRDSGIEKEPGCSTIEVDNQ 503
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 173/516 (33%), Positives = 255/516 (49%), Gaps = 106/516 (20%)
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
D F++N +I+ + ++P A+ L M + + +KF+ S VLKAC+RL + G +H
Sbjct: 85 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 144
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
G + K G + F++N LI + CG L + +FD K D V+++S+ GY + G +
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 204
Query: 189 MARSLFD----------------------------------EMPVRDLVSWNVMITGYAK 214
AR LFD +MP +DL+SWN MI GY K
Sbjct: 205 SARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVK 264
Query: 215 QGEMEKANELFNEVPKRDVVSW-------------------------------NAMISGY 243
G +E A LF+ +P+RDVV+W N+M++GY
Sbjct: 265 HGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGY 324
Query: 244 VLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
V + +ALE+F +M PDD T++ +L A A LG L +H +++ +
Sbjct: 325 VQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLG 384
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
L G ALIDMY+KCGSI+ A+ VF G+ ++ + W+ +IGGLA HG E + M +++
Sbjct: 385 GKL-GVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 443
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV----------- 411
RL ++P +ITFVGVL ACSH+G V+EG F+LMR ++ IEP ++HYG
Sbjct: 444 RLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 503
Query: 412 ----------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
H + E G L K L+ YVLLSN+Y
Sbjct: 504 ELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMY 563
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
AS G W V +VR +M + I+K PGCS IE D +
Sbjct: 564 ASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRV 599
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 140/323 (43%), Gaps = 32/323 (9%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFV 111
G +++A +F ++ D YN+++ G Q++ ++A+ +++ MEK S + P+ T V
Sbjct: 297 GFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIV 356
Query: 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV 171
L A +L + +H IV+ F + +LI ++ CG + A ++F+G +
Sbjct: 357 LPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI 416
Query: 172 VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWN------VMITGYAKQGEMEKANELF 225
W+++ G A G + S FD + + +S V + + K L
Sbjct: 417 DHWNAMIGGLAIHG---LGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLC 473
Query: 226 NEVPKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
E+ +R + + M+ G + A + EEM P+DV + LTAC+
Sbjct: 474 FELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPV---EPNDVIWRTFLTACS 530
Query: 280 DLGDLEVGKKV--HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS- 336
+ E G+ V H L + + VL N MYA G + V M++R +
Sbjct: 531 HHKEFETGELVAKHLILQAGYNPSSYVLLSN----MYASFGMWKDVRRVRTMMKERKIEK 586
Query: 337 ----TWSTLIGGLAFHGFAEESI 355
+W L G + H F +SI
Sbjct: 587 IPGCSWIELDGRV--HEFFVDSI 607
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 225 FNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284
F EV D WNA+I + +QAL + M G D ++ +L AC+ LG +
Sbjct: 80 FGEV--EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFV 137
Query: 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344
+ G ++H L T + + N LI +Y KCG + + ++F M RD +++++I G
Sbjct: 138 KGGMQIH-GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDG 196
Query: 345 LAFHGFAEESIAMFREM 361
G + +F M
Sbjct: 197 YVKCGLIVSARELFDLM 213
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 285 bits (730), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 173/542 (31%), Positives = 274/542 (50%), Gaps = 90/542 (16%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT 75
T+ LKQI A + + G + +LI++ S G I +A ++F + P F +N
Sbjct: 32 THKAQLKQIHARLLVLGLQFSGFLITKLIHASSSF--GDITFARQVFDDLPRPQIFPWNA 89
Query: 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135
IIRG +++ + DA+ +Y+ M+ + P+ FTF +LKAC+ L + MG VH ++ + G
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG 149
Query: 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDG--DAKMDVVAWSSLTAGYARRGELSMARSL 193
F+ + FV+N LI +A C L +A +F+G + +V+W+++ + YA+ GE A +
Sbjct: 150 FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEI 209
Query: 194 FDEMPVRD------------------------------------------LVSWNVMITG 211
F +M D L+S N M
Sbjct: 210 FSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM--- 266
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
YAK G++ A LF+++ +++ WNAMISGY G ++A++MF EM + RPD +++
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISI 326
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
S ++ACA +G LE + ++ + + V +ALIDM+AKCGS+E A VF
Sbjct: 327 TSAISACAQVGSLEQARSMY-EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
DRDV WS +I G HG A E+I+++R M+R V P ++TF+G+L+AC+H+G V EG
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 392 YFKLMRDEYNIEPNIRHYGV---------------------------------------H 412
+F M D + I P +HY H
Sbjct: 446 FFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
VELG A ++L ++ +G YV LSN+YA+ W+RV +VR M + + K GCS
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564
Query: 473 IE 474
+E
Sbjct: 565 VE 566
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 186/592 (31%), Positives = 282/592 (47%), Gaps = 130/592 (21%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C KQ+ + G + + ++L + G ++YA+K+FVKI EPD ++N
Sbjct: 44 CKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWN 103
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK---- 130
+I+G ++ + V LY M K + P+ TF F+L L R+ G GK
Sbjct: 104 NMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNG----LKRDGGALACGKKLHC 159
Query: 131 -IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+VK+G N +V+N+L+ ++ CG ++ A +FD K DV +W+ + +GY R E
Sbjct: 160 HVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEE 219
Query: 190 ARSLFDEMPVRDLVS----------------------------------------WNVMI 209
+ L EM R+LVS N ++
Sbjct: 220 SIELLVEME-RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALV 278
Query: 210 TGYAKQGEMEKANEL-------------------------------FNEVPKRDVVSWNA 238
YA GEM+ A + F+++P RD +SW
Sbjct: 279 NAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTI 338
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MI GY+ G ++LE+F EM+S G PD+ TM+S+LTACA LG LE+G+ + T +D
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK-TYIDKN 397
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
V+ GNALIDMY KCG E+A +VF M RD TW+ ++ GLA +G +E+I +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
+MQ + ++P +IT++GVL AC+H+G V++ +K+F MR ++ IEP++ HYG
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
+H D + LA K++L + D Y LL
Sbjct: 518 AGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALL 577
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIE---------ADDKAFLQ 482
NIYA W + +VR+ + D IKK PG SLIE A DK+ LQ
Sbjct: 578 CNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQ 629
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 281 bits (720), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 249/468 (53%), Gaps = 79/468 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G I ++ +F + +PD F++ I ++ + A LY Q+ I PN+FTFS +L
Sbjct: 78 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLL 137
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
K+C+ G +H ++K+G + +V L+ DV
Sbjct: 138 KSCST----KSGKLIHTHVLKFGLGIDPYVATGLV----------------------DV- 170
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
YA+ G++ A+ +FD MP R LVS MIT YAKQG +E A LF+ + +RD
Sbjct: 171 --------YAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERD 222
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVH 291
+VSWN MI GY G AL +F+++ + G+ +PD++T+++ L+AC+ +G LE G+ +H
Sbjct: 223 IVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIH 282
Query: 292 CTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
+ + KV G LIDMY+KCGS+E A+ VF +D+ W+ +I G A HG+
Sbjct: 283 VFVKSSRIRLNVKVCTG--LIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGY 340
Query: 351 AEESIAMFREMQRLK-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
+++++ +F EMQ + ++PT+ITF+G L AC+HAG V EG + F+ M EY I+P I HY
Sbjct: 341 SQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHY 400
Query: 410 G---------------------------------------VHGDVELGRLANKRLLNMRK 430
G +HGD LG+ + L+ +
Sbjct: 401 GCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNI 460
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
SG YVLLSNIYAS G++ V KVR LM + I K+PG S IE ++K
Sbjct: 461 KNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENK 508
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 35/211 (16%)
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
YA G++ + LF++ D+ + A I+ + G+ QA ++ ++ S P++ T
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGV------------AK--------------- 303
SLL +C+ + GK +H +L G+ AK
Sbjct: 133 FSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 304 ---VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
++ A+I YAK G++E A +F M +RD+ +W+ +I G A HGF +++ +F++
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 361 -MQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
+ K +P EIT V L ACS G +E G+
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGR 279
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
YA G I ++ +F D D+ ++ I + +G +++ ++ ++ ++ P E TF
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 374 VGVLVACS-HAGK-VEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKD 431
+L +CS +GK + F L D Y + Y GDV A K M +
Sbjct: 134 SSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDV---VSAQKVFDRMPER 190
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+ YA +G VE R L D
Sbjct: 191 SLVSSTAMITCYAKQGN---VEAARALFD 216
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/539 (29%), Positives = 271/539 (50%), Gaps = 74/539 (13%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+R +H + L + ++QI A + ++G D + + + ++ ++YA++
Sbjct: 2 SRIGKHPAIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQ 61
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS--IKPNKFTFSFVLKACTRL 118
+ + +P F N++IR +S P + Y ++ +KP+ +T +F+++ACT L
Sbjct: 62 ILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGL 121
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLT 178
R G VHG ++ GF+ + V+ LI
Sbjct: 122 RMRETGLQVHGMTIRRGFDNDPHVQTGLISL----------------------------- 152
Query: 179 AGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238
YA G L +F+ +P D V M+T A+ G++ A +LF +P+RD ++WNA
Sbjct: 153 --YAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNA 210
Query: 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298
MISGY G +++AL +F M+ G + + V M+S+L+AC LG L+ G+ H + ++
Sbjct: 211 MISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAH-SYIERN 269
Query: 299 SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358
V L+D+YAKCG +E+A+EVF GM +++V TWS+ + GLA +GF E+ + +F
Sbjct: 270 KIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELF 329
Query: 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
M++ V P +TFV VL CS G V+EG+++F MR+E+ IEP + HYG
Sbjct: 330 SLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYAR 389
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
++ ++ELG LA+K++L + G YVLL
Sbjct: 390 AGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLL 449
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNLDT 498
SNIYA +W+ V VR+ M ++KQPGCS++E + + ++ K P +D
Sbjct: 450 SNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVH-EFFVGDKSHPKYTQIDA 507
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/509 (31%), Positives = 265/509 (52%), Gaps = 73/509 (14%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S L +C ++ L +I L+ G + + + + + ++ G ++YA+K K+++P
Sbjct: 12 SILRHQCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDP 71
Query: 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128
+ +N +IRG + S+NP ++ +Y QM + + P+ T+ F++K+ +RL R +G +H
Sbjct: 72 PNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLH 131
Query: 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188
+VK G E++ F+ N+LI+ + + D +A LFD ++V W+S+ YA+ G++
Sbjct: 132 CSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVV 191
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
AR +FDEM RD+V+W+ MI GY K+GE KA E+F+++
Sbjct: 192 SARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQM-------------------- 231
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
MR + ++VTM+S++ ACA LG L GK VH +LD+ + +L
Sbjct: 232 ----------MRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQ-T 280
Query: 309 ALIDMYAKCGSIERAIEVFL--GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
+LIDMYAKCGSI A VF +++ D W+ +IGGLA HGF ES+ +F +M+ K+
Sbjct: 281 SLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKI 340
Query: 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV--------------- 411
P EITF+ +L ACSH G V+E +FK ++ E EP HY
Sbjct: 341 DPDEITFLCLLAACSHGGLVKEAWHFFKSLK-ESGAEPKSEHYACMVDVLSRAGLVKDAH 399
Query: 412 ------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447
HG++EL K+L+ ++ G YV L+N+YA
Sbjct: 400 DFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINK 459
Query: 448 EWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
++ +R+ M+ +KK G S+++ D
Sbjct: 460 QFRAARSMREAMEKKGVKKIAGHSILDLD 488
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 273 bits (697), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 178/548 (32%), Positives = 265/548 (48%), Gaps = 91/548 (16%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGA----INYAHKMFVKI- 65
L +C++LR KQIQ + D +LI + V G +Y+ + I
Sbjct: 12 LISRCSSLRVFKQIQTQLITRDLLRD-----DLIINKVVTFLGKSADFASYSSVILHSIR 66
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+ +F YNT++ A P +F Y P+ FTF V KAC + G
Sbjct: 67 SVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGK 126
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG + K GF + +V+NSL++F+ CG+ A +F DVV+W+ + G+ R G
Sbjct: 127 QIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTG 186
Query: 186 ELSMARSLFDEMPVR------------------------------------DLVSWNVMI 209
A F +M V L + N +I
Sbjct: 187 LYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALI 246
Query: 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR-SVGERPDD 268
Y K ++ A +F E+ K+D VSWN+MISG V C +K+A+++F M+ S G +PD
Sbjct: 247 DMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDG 306
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVF 327
+ S+L+ACA LG ++ G+ VH +L T+G+ H G A++DMYAKCG IE A+E+F
Sbjct: 307 HILTSVLSACASLGAVDHGRWVHEYIL--TAGIKWDTHIGTAIVDMYAKCGYIETALEIF 364
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
G+R ++V TW+ L+GGLA HG ES+ F EM +L +P +TF+ L AC H G V+
Sbjct: 365 NGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVD 424
Query: 388 EGKKYFKLMRD-EYNIEPNIRHYGVHGDV------------------------------- 415
EG++YF M+ EYN+ P + HYG D+
Sbjct: 425 EGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILS 484
Query: 416 ---------ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
EL + L++ ++SG YVLLSNI+A+ W+ V ++R+LM I K
Sbjct: 485 ACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISK 544
Query: 467 QPGCSLIE 474
PG S IE
Sbjct: 545 VPGSSYIE 552
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 271 bits (693), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/466 (33%), Positives = 244/466 (52%), Gaps = 71/466 (15%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G INYA +F +++ D +NT+I + +A L+ +M+ ++ P++ ++
Sbjct: 160 GRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIV 219
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
AC R NM + N IY L + D +MD
Sbjct: 220 SACGRT--GNMRY------------------NRAIY-----------EFLIENDVRMDTH 248
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRD 232
++L YA G + MAR F +M VR+L M++GY+K G ++ A +F++ K+D
Sbjct: 249 LLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKD 308
Query: 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+V W MIS YV ++AL +FEEM G +PD V+M S+++ACA+LG L+ K VH
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVH- 367
Query: 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ + + +++ NALI+MYAKCG ++ +VF M R+V +WS++I L+ HG A
Sbjct: 368 SCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEAS 427
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
+++++F M++ V P E+TFVGVL CSH+G VEEGKK F M DEYNI P + HYG
Sbjct: 428 DALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCM 487
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG++ELG+ A KR+L + D
Sbjct: 488 VDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHD 547
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKA 479
G VL+SNIYA W V +R++M++ ++ K+ G S I+ + K+
Sbjct: 548 GALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKS 593
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 101/209 (48%), Gaps = 30/209 (14%)
Query: 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271
YA G + A +F+E+ RDVV+WN MI Y G+ +A ++FEEM+ PD++ +
Sbjct: 156 YASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMIL 215
Query: 272 LSLLTACADLGDLEVGKKVH---------------CTLLDMTSG---------------V 301
++++AC G++ + ++ L+ M +G V
Sbjct: 216 CNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSV 275
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
+ A++ Y+KCG ++ A +F +D+ W+T+I + +E++ +F EM
Sbjct: 276 RNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM 335
Query: 362 QRLKVRPTEITFVGVLVACSHAGKVEEGK 390
++P ++ V+ AC++ G +++ K
Sbjct: 336 CCSGIKPDVVSMFSVISACANLGILDKAK 364
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 7/185 (3%)
Query: 224 LFNEVPKR-DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+F+ +P + + +N + + + ++ +R VG R D + L +L A + +
Sbjct: 66 VFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVS 125
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
L G ++H + + + +DMYA CG I A VF M RDV TW+T+I
Sbjct: 126 ALFEGMELHGVAFKIATLCDPFVE-TGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMI 184
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G +E+ +F EM+ V P E+ ++ AC G + + + E+ I
Sbjct: 185 ERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIY-----EFLI 239
Query: 403 EPNIR 407
E ++R
Sbjct: 240 ENDVR 244
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 159/501 (31%), Positives = 253/501 (50%), Gaps = 74/501 (14%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C NL +KQI V G + L +LI + + + YA ++ + + F++
Sbjct: 59 CINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWT 118
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
+IRG A +A+ +Y M K I P FTFS +LKAC + N+G H + +
Sbjct: 119 AVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRL 178
Query: 135 -GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
GF F +V N++I + C ++ A R +
Sbjct: 179 RGFCF-VYVGNTMIDMYVKCESIDCA-------------------------------RKV 206
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
FDEMP RD++SW +I YA+ G ME A ELF +P +D+V+W AM++G+ ++AL
Sbjct: 207 FDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEAL 266
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG-KKVHCTLLDMTSGVAKVLHGNALID 312
E F+ M G R D+VT+ ++ACA LG + + V S V+ G+ALID
Sbjct: 267 EYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALID 326
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM-QRLKVRPTEI 371
MY+KCG++E A+ VF+ M +++V T+S++I GLA HG A+E++ +F M + +++P +
Sbjct: 327 MYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTV 386
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TFVG L+ACSH+G V++G++ F M + ++P HY
Sbjct: 387 TFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKT 446
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
+H + E+ +A + L + D G+Y+LLSN+YAS G+W V
Sbjct: 447 MSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGV 506
Query: 453 EKVRKLMDDSDIKKQPGCSLI 473
+VRKL+ + +KK P S +
Sbjct: 507 LRVRKLIKEKGLKKTPAVSWV 527
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 164/476 (34%), Positives = 244/476 (51%), Gaps = 90/476 (18%)
Query: 55 INYAHKMF-VKITEPDTFMYNTIIRG------SAQSQNPLDAVFLYTQMEKCSIKPNKFT 107
I YA+ +F ++ + ++F++N IIR S Q +P+ +Y +M + P+ T
Sbjct: 8 IAYANPIFHIRHLKLESFLWNIIIRAIVHNVSSPQRHSPIS---VYLRMRNHRVSPDFHT 64
Query: 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167
F F+L + L+ +G H +I+ +G + + FVR SL+ +++CGDL +A +FD
Sbjct: 65 FPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSG 124
Query: 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE 227
D+ AW+S+ YA+ G + AR LFDEMP R+++SW+ +I GY
Sbjct: 125 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGY--------------- 169
Query: 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR-----SVGERPDDVTMLSLLTACADLG 282
V+CG K+AL++F EM+ RP++ TM ++L+AC LG
Sbjct: 170 ----------------VMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWST 340
LE GK VH +D ++ G ALIDMYAKCGS+ERA VF LG + +DV +S
Sbjct: 214 ALEQGKWVH-AYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK-KDVKAYSA 271
Query: 341 LIGGLAFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+I LA +G +E +F EM + P +TFVG+L AC H G + EGK YFK+M +E
Sbjct: 272 MICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEE 331
Query: 400 YNIEPNIRHYGVH---------------------------------------GDVELGRL 420
+ I P+I+HYG GD++
Sbjct: 332 FGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEG 391
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
A KRL+ + SG YVLLSN+YA G W V+ +R M+ I K PGCS +E +
Sbjct: 392 ALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVE 447
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 265 bits (676), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 179/541 (33%), Positives = 266/541 (49%), Gaps = 100/541 (18%)
Query: 36 DSSALRELIYSGSVVIPGAI-----NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAV 90
D R+L+ S +V+I G + A ++F + E D +NT++ G AQ+ DA
Sbjct: 119 DEMPERDLV-SWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDAR 177
Query: 91 FLYTQM-EKCSIKPNKFTFSFVL-----KACTRLLYRNM-----------GFCVHGKIVK 133
++ +M EK + N ++V +AC R GF KIV+
Sbjct: 178 SVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVE 237
Query: 134 YGFEFNRF-VR-----NSLIYFHANCGDLNTASVLFDGDAKMDV---------------- 171
F+ VR N++I +A G ++ A LFD DV
Sbjct: 238 ARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMV 297
Query: 172 ---------------VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG 216
V+W+++ AGY + + MA+ LFD MP R++ +WN MITGYA+ G
Sbjct: 298 EEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCG 357
Query: 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276
++ +A LF+++PKRD VSW AMI+GY G + +AL +F +M G R + + S L+
Sbjct: 358 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALS 417
Query: 277 ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS 336
CAD+ LE+GK++H L+ + GNAL+ MY KCGSIE A ++F M +D+
Sbjct: 418 TCADVVALELGKQLHGRLVKGGYETGCFV-GNALLLMYCKCGSIEEANDLFKEMAGKDIV 476
Query: 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+W+T+I G + HGF E ++ F M+R ++P + T V VL ACSH G V++G++YF M
Sbjct: 477 SWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTM 536
Query: 397 RDEYNIEPNIRHYG---------------------------------------VHGDVEL 417
+Y + PN +HY VHG+ EL
Sbjct: 537 TQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTEL 596
Query: 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADD 477
A ++ M + SG YVLLSN+YAS G W V K+R M D +KK PG S IE +
Sbjct: 597 AETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQN 656
Query: 478 K 478
K
Sbjct: 657 K 657
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 127/262 (48%), Gaps = 13/262 (4%)
Query: 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLV 203
N I + G N A +F + V+++ + +GY R GE +AR LFDEMP RDLV
Sbjct: 68 NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLV 127
Query: 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
SWNVMI GY + + KA ELF +P+RDV SWN M+SGY G A +F+ M
Sbjct: 128 SWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM---- 183
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
+DV+ +LL+A +E C L A ++ N L+ + K I A
Sbjct: 184 PEKNDVSWNALLSAYVQNSKMEEA----CMLFKSRENWA-LVSWNCLLGGFVKKKKIVEA 238
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+ F M RDV +W+T+I G A G +E+ +F E V T+ ++
Sbjct: 239 RQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV----FTWTAMVSGYIQN 294
Query: 384 GKVEEGKKYFKLMRDEYNIEPN 405
VEE ++ F M + + N
Sbjct: 295 RMVEEARELFDKMPERNEVSWN 316
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 176/555 (31%), Positives = 266/555 (47%), Gaps = 98/555 (17%)
Query: 18 LRTLKQIQALVTIN---GFNSDSSALRELIYSGSVV-----IPGAIN--YAHKMFVKITE 67
L L+ ++LV +N G SS +R +I ++ P +N YA +F I
Sbjct: 10 LSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 69
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
P +++N++IRG + S NP A+ Y +M + P+ FTF +VLKAC+ L G CV
Sbjct: 70 PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 129
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
HG +VK GFE N +V L++ + CG++N +F+ + +VVAW SL +G+
Sbjct: 130 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRF 189
Query: 188 SMARSLFDEMP--------------------VRDLVS----------------------W 205
S A F EM +D+V+ +
Sbjct: 190 SDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGF 249
Query: 206 NV-----MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
NV +I YAK G++ A LF+ +P+R +VSWN++I+GY G ++AL MF +M
Sbjct: 250 NVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDML 309
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
+G PD VT LS++ A G ++G+ +H + T V AL++MYAK G
Sbjct: 310 DLGIAPDKVTFLSVIRASMIQGCSQLGQSIH-AYVSKTGFVKDAAIVCALVNMYAKTGDA 368
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ-RLKVRPTEITFVGVLVA 379
E A + F + +D W+ +I GLA HG E++++F+ MQ + P IT++GVL A
Sbjct: 369 ESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYA 428
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSH G VEEG++YF MRD + +EP + HYG
Sbjct: 429 CSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVN 488
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+H ++EL + + SG YVLLSNIYA G W V+ +R+ M
Sbjct: 489 IWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESMK 548
Query: 461 DSDIKKQPGCSLIEA 475
+ K G S +E
Sbjct: 549 SKRVDKVLGHSSVET 563
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG---SIERAIEVF 327
+LS L C L +L ++H L+ +S + V+ + LID C ++ A VF
Sbjct: 9 ILSQLENCRSLVEL---NQLH-GLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVF 64
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
+ V W+++I G + ++++ ++EM R P TF VL ACS ++
Sbjct: 65 ESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQ 124
Query: 388 EG 389
G
Sbjct: 125 FG 126
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 261 bits (668), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 241/460 (52%), Gaps = 75/460 (16%)
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
+YA+++F I P+ ++N +I+ + PL+++ ++ M+ I +++T++ +LK+C
Sbjct: 53 DYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSC 112
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
+ L G CVHG++++ GF +R G ++ VV
Sbjct: 113 SSLSDLRFGKCVHGELIRTGF--HRL-----------------------GKIRIGVVEL- 146
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
Y G + A+ +FDEM R++V WN+MI G+ G++E+ LF ++ +R +VS
Sbjct: 147 -----YTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVS 201
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WN+MIS CG +++ALE+F EM G PD+ T++++L A LG L+ GK +H T
Sbjct: 202 WNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHST-- 259
Query: 296 DMTSGVAK--VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
+SG+ K + GNAL+D Y K G +E A +F M+ R+V +W+TLI G A +G E
Sbjct: 260 AESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEF 319
Query: 354 SIAMFREM-QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV- 411
I +F M + KV P E TF+GVL CS+ G+VE G++ F LM + + +E HYG
Sbjct: 320 GIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAM 379
Query: 412 --------------------------------------HGDVELGRLANKRLLNMRKDES 433
HGDV+L +A L+ + S
Sbjct: 380 VDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNS 439
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
G+YVLLSN+YA G W VEKVR LM + ++K G S I
Sbjct: 440 GNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 161/370 (43%), Gaps = 53/370 (14%)
Query: 11 LWKKCTNLRTL---KQIQALVTINGFNSDSS---ALRELIYSGSVVIPGAINYAHKMFVK 64
L K C++L L K + + GF+ + EL SG G + A K+F +
Sbjct: 108 LLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSG-----GRMGDAQKVFDE 162
Query: 65 ITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
++E + ++N +IRG S + + L+ QM + SI S L C R
Sbjct: 163 MSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMIS-SLSKCGRDREALEL 221
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF-----DGDAKMDVVAWSSLTA 179
FC +++ GF+ + +++ A+ G L+T + G K + ++L
Sbjct: 222 FC---EMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVD 278
Query: 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM 239
Y + G+L A ++F +M R++VSWN +I+G A G+ E +LF+
Sbjct: 279 FYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFD------------- 325
Query: 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299
M EE + P++ T L +L C+ G +E G+++ +++
Sbjct: 326 --------------AMIEEGKVA---PNEATFLGVLACCSYTGQVERGEELFGLMMERFK 368
Query: 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMF 358
A+ H A++D+ ++ G I A + M + + + W +L+ HG + +A
Sbjct: 369 LEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHG--DVKLAEV 426
Query: 359 REMQRLKVRP 368
M+ +K+ P
Sbjct: 427 AAMELVKIEP 436
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 255 bits (651), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 163/556 (29%), Positives = 254/556 (45%), Gaps = 111/556 (19%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
++RTL+ + + + + +SS +L+ + + + + A K+F +I E + + N +
Sbjct: 54 DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASL--KDVASARKVFDEIPERNVIIINVM 111
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
IR + + V ++ M C+++P+ +TF VLKAC+ +G +HG K G
Sbjct: 112 IRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGL 171
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDE 196
FV N L+ + CG LS AR + DE
Sbjct: 172 SSTLFVGNGLVSMYGKCG-------------------------------FLSEARLVLDE 200
Query: 197 MPVRDLVSWNVMITGYAKQGEMEKANE--------------------------------- 223
M RD+VSWN ++ GYA+ + A E
Sbjct: 201 MSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVM 260
Query: 224 ----LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
+F ++ K+ +VSWN MI Y+ M +A+E++ M + G PD V++ S+L AC
Sbjct: 261 YVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACG 320
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
D L +GKK+H ++ + +L NALIDMYAKCG +E+A +VF M+ RDV +W+
Sbjct: 321 DTSALSLGKKIH-GYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
+I F G +++A+F ++Q + P I FV L ACSHAG +EEG+ FKLM D
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439
Query: 400 YNIEPNIRHYG---------------------------------------VHGDVELGRL 420
Y I P + H VH D ++G L
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
A +L + ++SG YVLLSNIYA G W V +R +M +KK PG S +E ++
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEV-NRII 558
Query: 481 LQYLFNLKPKPNSGNL 496
+L + P S +
Sbjct: 559 HTFLVGDRSHPQSDEI 574
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 254 bits (650), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 157/506 (31%), Positives = 254/506 (50%), Gaps = 80/506 (15%)
Query: 43 LIYSGSVVIPGAINYAHKMF-VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CS 100
L+ S S V I YA K+F + D+F+ N++I+ +++ D+ LY + K
Sbjct: 17 LVISASAV---GIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETC 73
Query: 101 IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160
P+ FTF+ + K+C+ + G +H +I ++GF + +V ++ +A G + A
Sbjct: 74 FAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCAR 133
Query: 161 VLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEME 219
FD V+W++L +GY R GEL +A LFD+MP V+D+V +N M+ G+ K G+M
Sbjct: 134 NAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMT 193
Query: 220 KANELFNEV-------------------------------PKRDVVSWNAMISGYVLCGM 248
A LF+E+ P+R++VSWN MI GY
Sbjct: 194 SARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQ 253
Query: 249 NKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307
++ + +F+EM++ PDDVT+LS+L A +D G L +G+ HC + KV
Sbjct: 254 PQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHC-FVQRKKLDKKVKVC 312
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
A++DMY+KCG IE+A +F M ++ V++W+ +I G A +G A ++ +F M ++ +
Sbjct: 313 TAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMM-IEEK 371
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV---------------- 411
P EIT + V+ AC+H G VEEG+K+F +MR E + I HYG
Sbjct: 372 PDEITMLAVITACNHGGLVEEGRKWFHVMR-EMGLNAKIEHYGCMVDLLGRAGSLKEAED 430
Query: 412 -----------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448
+ D+E K+ + + G+YVLL N+YA+
Sbjct: 431 LITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKR 490
Query: 449 WNRVEKVRKLMDDSDIKKQPGCSLIE 474
W+ V+ +M + KK+ GCSLIE
Sbjct: 491 WDDFGMVKNVMRKNQAKKEVGCSLIE 516
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 155/503 (30%), Positives = 243/503 (48%), Gaps = 83/503 (16%)
Query: 57 YAHKMFVKITEPDTFMYNTIIR--GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
YA ++ ++ +++++I + N + Y M + + P++ TF +LKA
Sbjct: 54 YARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKA 113
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
+L N F H IVK+G + + FVRNSLI +++ G + AS LFDG DVV W
Sbjct: 114 VFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTW 172
Query: 175 SSLTAGYARRGELSMARSLFDEMP-----------------------VR----------- 200
+++ G+ R G S A F EM VR
Sbjct: 173 TAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLE 232
Query: 201 ------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALE 254
D+ + ++ Y K + A ++F+E+P R+VV+W A+I+GYV + +
Sbjct: 233 TGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGML 292
Query: 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314
+FEEM P++ T+ S+L+ACA +G L G++VHC ++ + + G LID+Y
Sbjct: 293 VFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEI-NTTAGTTLIDLY 351
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
KCG +E AI VF + +++V TW+ +I G A HG+A ++ +F M V P E+TF+
Sbjct: 352 VKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFM 411
Query: 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------------ 410
VL AC+H G VEEG++ F M+ +N+EP HY
Sbjct: 412 AVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPM 471
Query: 411 ---------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455
+H D ELG+ A R++ ++ SG Y LL+N+Y+ W+ V +V
Sbjct: 472 EPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARV 531
Query: 456 RKLMDDSDIKKQPGCSLIEADDK 478
RK M D + K PG S IE K
Sbjct: 532 RKQMKDQQVVKSPGFSWIEVKGK 554
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 159/532 (29%), Positives = 260/532 (48%), Gaps = 91/532 (17%)
Query: 4 NRHRSSRLWKKCTNLRTLK---QIQALVTINGFNSDSSALRELIYSGSVVIP-----GAI 55
N + + + C+ L + Q+ +L+ + F SD +Y GS ++ G +
Sbjct: 151 NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSD-------VYIGSALVDMYSKCGNV 203
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
N A ++F ++ + + +N++I Q+ ++A+ ++ M + ++P++ T + V+ AC
Sbjct: 204 NDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISAC 263
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
L +G VHG++VK N +RN D++ +
Sbjct: 264 ASLSAIKVGQEVHGRVVK-----NDKLRN-------------------------DIILSN 293
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
+ YA+ + AR +FD MP+R++++ MI+GYA + A +F ++ +R+VVS
Sbjct: 294 AFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVS 353
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WNA+I+GY G N++AL +F ++ P + ++L ACADL +L +G + H +L
Sbjct: 354 WNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVL 413
Query: 296 D----MTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
SG + GN+LIDMY KCG +E VF M +RD +W+ +I G A +G+
Sbjct: 414 KHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGY 473
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
E++ +FREM +P IT +GVL AC HAG VEEG+ YF M ++ + P HY
Sbjct: 474 GNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYT 533
Query: 411 ---------------------------------------VHGDVELGRLANKRLLNMRKD 431
VH ++ LG+ ++LL +
Sbjct: 534 CMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPS 593
Query: 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL--IEADDKAFL 481
SG YVLLSN+YA G+W V VRK M + KQPGCS I+ D F+
Sbjct: 594 NSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFM 645
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 145/265 (54%), Gaps = 32/265 (12%)
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186
VH ++K GF F++N LI ++ CG L DG
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLE------DG--------------------- 74
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246
R +FD+MP R++ +WN ++TG K G +++A+ LF +P+RD +WN+M+SG+
Sbjct: 75 ----RQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQH 130
Query: 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306
++AL F M G ++ + S+L+AC+ L D+ G +VH +L+ + ++ V
Sbjct: 131 DRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVH-SLIAKSPFLSDVYI 189
Query: 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
G+AL+DMY+KCG++ A VF M DR+V +W++LI +G A E++ +F+ M +V
Sbjct: 190 GSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRV 249
Query: 367 RPTEITFVGVLVACSHAGKVEEGKK 391
P E+T V+ AC+ ++ G++
Sbjct: 250 EPDEVTLASVISACASLSAIKVGQE 274
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 175/557 (31%), Positives = 272/557 (48%), Gaps = 104/557 (18%)
Query: 5 RHRSSR-------LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINY 57
RHR S L K + L +KQI + ++G S + L + + + G
Sbjct: 126 RHRVSPDRQTFLYLMKASSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMEL-GNFGV 184
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117
A K+F ++ PD +N +I G A+ L+A+ LY +M I+P+++T +L C
Sbjct: 185 AEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGH 244
Query: 118 LLYRNMGFCVHGKIVKYG--FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
L +G VHG I + G + N + N+L+ + C +
Sbjct: 245 LSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKE-------------------- 284
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
+G A+R FD M +D+ SWN M+ G+ + G+ME A +F+++PKRD+VS
Sbjct: 285 ---SGLAKRA--------FDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVS 333
Query: 236 WNAMISGYVLCGMNKQAL-EMFEEMRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCT 293
WN+++ GY G +++ + E+F EM V + +PD VTM+SL++ A+ G+L G+ VH
Sbjct: 334 WNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGL 393
Query: 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEE 353
++ + L +ALIDMY KCG IERA VF ++DV+ W+++I GLAFHG ++
Sbjct: 394 VIRLQLKGDAFL-SSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQ 452
Query: 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--- 410
++ +F MQ V P +T + VL ACSH+G VEEG F M+D++ +P HYG
Sbjct: 453 ALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLV 512
Query: 411 -----------------------------------VHG--DVELGRLANKRLLNMRKDES 433
G D+E LA LL + ++
Sbjct: 513 DLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKE 572
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCS----------LIEADD------ 477
G YVLLSNIYA+ G W +K R+ M++ +KK G S + A+
Sbjct: 573 GGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPRW 632
Query: 478 ---KAFLQYLFN-LKPK 490
K LQ+L+N +KPK
Sbjct: 633 TEIKRILQHLYNEMKPK 649
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%)
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
N P +V +N MIS + + ++ M PD T L L+ A + L +
Sbjct: 91 FLNFTPNPNVFVYNTMISA--VSSSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSE 148
Query: 284 LEVGKKVHCTLLDMTSGVAKVLH--GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
+ K++HC ++ SG + + N+L+ Y + G+ A +VF M DVS+++ +
Sbjct: 149 V---KQIHCHII--VSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVM 203
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390
I G A GF+ E++ ++ +M + P E T + +LV C H + GK
Sbjct: 204 IVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGK 252
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 159/537 (29%), Positives = 267/537 (49%), Gaps = 83/537 (15%)
Query: 19 RTLKQIQALVTING-FNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTII 77
R + QI A V G + SS R+LI S + G I+YA K+F ++ + +YN++I
Sbjct: 31 RHITQIHAFVISTGNLLNGSSISRDLIASCGRI--GEISYARKVFDELPQRGVSVYNSMI 88
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
++ +NP + + LY QM I+P+ TF+ +KAC L G V K V +G++
Sbjct: 89 VVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYK 148
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ FV +S++ + CG ++ A VLF AK DV+ W+++ G+A+ G+ A + EM
Sbjct: 149 NDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREM 208
Query: 198 P----------------------------------VRDLVSWNVMITG-----YAKQGEM 218
R + NV++ YAK G +
Sbjct: 209 QNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFI 268
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
E A+ +F+ + + VSW ++ISG+ G+ +A E EM+S+G +PD VT++ +L AC
Sbjct: 269 EVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVAC 328
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
+ +G L+ G+ VHC +L V + AL+DMY+KCG++ + E+F + +D+ W
Sbjct: 329 SQVGSLKTGRLVHCYILK--RHVLDRVTATALMDMYSKCGALSSSREIFEHVGRKDLVCW 386
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+T+I HG +E +++F +M + P TF +L A SH+G VE+G+ +F +M +
Sbjct: 387 NTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMIN 446
Query: 399 EYNIEPNIRHYGV---------------------------------------HGDVELGR 419
+Y I+P+ +HY H ++ +G
Sbjct: 447 KYKIQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGCINHRNLSVGD 506
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+A ++L + D G L+SN +A+ +W V KVRKLM + ++K PG S IE +
Sbjct: 507 IAANKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYSAIEVN 563
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 163/550 (29%), Positives = 264/550 (48%), Gaps = 90/550 (16%)
Query: 9 SRLWKKCTNLRTL---KQIQA-LVTINGFNSDSSALRELI--YSGSVVIPGAINYAHKMF 62
S+ K CT L+ L K+I LV + F D+ L L+ Y+ G I AHK+F
Sbjct: 146 SKALKACTELQDLDNGKKIHCQLVKVPSF--DNVVLTGLLDMYAKC----GEIKSAHKVF 199
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
IT + + ++I G ++ + + L+ +M + ++ N++T+ ++ ACT+L +
Sbjct: 200 NDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALH 259
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
G HG +VK G E + + SL+ + CGD++ A +F+ + +D+V W+++ GY
Sbjct: 260 QGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYT 319
Query: 183 RRGELSMARSLFDEMP--------------------------------------VRDLVS 204
G ++ A SLF +M + D
Sbjct: 320 HNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNV 379
Query: 205 WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
N ++ YAK + A +F ++D+V+WN++ISG+ G +AL +F M S
Sbjct: 380 ANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESV 439
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERA 323
P+ VT+ SL +ACA LG L VG +H + + + +H G AL+D YAKCG + A
Sbjct: 440 TPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA 499
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
+F + +++ TWS +IGG G S+ +F EM + + +P E TF +L AC H
Sbjct: 500 RLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHT 559
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHY---------------------------------- 409
G V EGKKYF M +YN P+ +HY
Sbjct: 560 GMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGA 619
Query: 410 -----GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
G+H +LG + K++L++ D++ YVL+SN+YAS G WN+ ++VR LM +
Sbjct: 620 FLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGL 679
Query: 465 KKQPGCSLIE 474
K G S +E
Sbjct: 680 SKIAGHSTME 689
Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 199/421 (47%), Gaps = 50/421 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINY---AHKMFVKITE 67
L KCTN+ +L+Q ++T NG D S +L V + G Y A +F +I E
Sbjct: 50 LLSKCTNIDSLRQSHGVLTGNGLMGDISIATKL-----VSLYGFFGYTKDARLVFDQIPE 104
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
PD +++ ++R ++ ++ V LY + K + + FS LKACT L + G +
Sbjct: 105 PDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKI 164
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
H ++VK F+ V L+ +A CG++ +A +F+ +VV W+S+ AGY +
Sbjct: 165 HCQLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLC 223
Query: 188 SMARSLFDEMPVRDLVS----------------------W-------------NVMITG- 211
LF+ M +++ W + ++T
Sbjct: 224 EEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSL 283
Query: 212 ---YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
Y K G++ A +FNE D+V W AMI GY G +AL +F++M+ V +P+
Sbjct: 284 LDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNC 343
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
VT+ S+L+ C + +LE+G+ VH L + G+ NAL+ MYAKC A VF
Sbjct: 344 VTIASVLSGCGLIENLELGRSVHG--LSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFE 401
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
++D+ W+++I G + +G E++ +F M V P +T + AC+ G +
Sbjct: 402 MESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAV 461
Query: 389 G 389
G
Sbjct: 462 G 462
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 136/279 (48%), Gaps = 15/279 (5%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+++ Y G + A +F+++P+ D W M+ Y L + + +++++ + G R D
Sbjct: 82 LVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYD 141
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
D+ L AC +L DL+ GKK+HC L+ + S VL G L+DMYAKCG I+ A +VF
Sbjct: 142 DIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTG--LLDMYAKCGEIKSAHKVF 199
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
+ R+V W+++I G + EE + +F M+ V E T+ +++AC+ +
Sbjct: 200 NDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALH 259
Query: 388 EGKKYFK-LMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNI---Y 443
+GK + L++ + + + V+ G ++N R + + D V+ + + Y
Sbjct: 260 QGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRV-FNEHSHVDLVMWTAMIVGY 318
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQ--------PGCSLIE 474
G N + + M +IK GC LIE
Sbjct: 319 THNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIE 357
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 158/534 (29%), Positives = 262/534 (49%), Gaps = 72/534 (13%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L+K C + L QI A + G D + L + S S +++Y+ +F ++ P T
Sbjct: 16 LFKLCKSEIHLNQIHARIIRKGLEQDQN-LISIFISSSSSSSSSLSYSSSVFERVPSPGT 74
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI-KPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+++N +I+G + + V + +M + + +P+++TF V+K C+ +G VHG
Sbjct: 75 YLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSVHG 134
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189
+++ GF+ + V S + F+ C DL +A +F + + V+W++L Y + GEL
Sbjct: 135 LVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEE 194
Query: 190 ARS-------------------------------LFDEMPVRDLVSWNVMITGYAKQGEM 218
A+S LFDEMP RD++S+ MI GYAK G+M
Sbjct: 195 AKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDM 254
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
A +LF E DV +W+A+I GY G +A ++F EM + +PD+ M+ L++AC
Sbjct: 255 VSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSAC 314
Query: 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW 338
+ +G E+ +KV L + + ALIDM AKCG ++RA ++F M RD+ ++
Sbjct: 315 SQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSY 374
Query: 339 STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398
+++ G+A HG E+I +F +M + P E+ F +L C + VEEG +YF+LMR
Sbjct: 375 CSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRK 434
Query: 399 EYNIEPNIRHY---------------------------------------GVHGDVELGR 419
+Y+I + HY +HG+ E+
Sbjct: 435 KYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAE 494
Query: 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
+ + L + +G YVLLSNIYA+ W V +R M+++ I K G S I
Sbjct: 495 VVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRSWI 548
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 157/525 (29%), Positives = 255/525 (48%), Gaps = 89/525 (16%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSD----SSALRELIYSGSVVIPGA----- 54
N S L K C L+ L Q A +G S+ +S ++++ + + P A
Sbjct: 3 NYSSCSYLLKLCRTLKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASKE 62
Query: 55 -INYAHKMFVKITEPDTFMYNTIIR-GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
++YA +F IT P TF +NTIIR + + L + + +M + S+ P+ TF FV
Sbjct: 63 VVSYATSVFRFITNPSTFCFNTIIRICTLHEPSSLSSKRFFVEMRRRSVPPDFHTFPFVF 122
Query: 113 KACTRLLYRNMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
KAC ++ +H + +++G + F N+LI
Sbjct: 123 KACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRV--------------------- 161
Query: 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
Y+ + A LFDE P RD+V++NV+I G K E+ +A ELF+ +P
Sbjct: 162 ----------YSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPL 211
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
RD+VSWN++ISGY ++A+++F+EM ++G +PD+V ++S L+ACA GD + GK +
Sbjct: 212 RDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAI 271
Query: 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGF 350
H + L L+D YAKCG I+ A+E+F D+ + TW+ +I GLA HG
Sbjct: 272 HDYTKRKRLFIDSFL-ATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGN 330
Query: 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410
E ++ FR+M ++P +TF+ VLV CSH+G V+E + F MR Y++ ++HYG
Sbjct: 331 GELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYG 390
Query: 411 -------------------------------------------VHGDVELGRLANKRLLN 427
+HG++E+ A R+
Sbjct: 391 CMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVKA 450
Query: 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD-DSDIKKQPGCS 471
+ ++ G Y ++ +YA+ W V KVR+++D D +KK G S
Sbjct: 451 LSPEDGGVYKVMVEMYANAERWEEVVKVREIIDRDKKVKKNVGFS 495
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 248 bits (634), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 152/508 (29%), Positives = 257/508 (50%), Gaps = 49/508 (9%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C + +L+ + A + G S A + + S + P +Y+ +F E + F+ N
Sbjct: 39 CKDTASLRHVHAQILRRGVLSSRVAAQLVSCSSLLKSP---DYSLSIFRNSEERNPFVLN 95
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
+IRG ++ +V + M + +KP++ TF FVLK+ ++L +R +G +H +K
Sbjct: 96 ALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKN 155
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLF----DGDAKMDVVAWSSLTAGYARRGELSMA 190
+ + FVR SL+ +A G L A +F D K ++ W+ L GY R ++ MA
Sbjct: 156 FVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMA 215
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
+LF MP R+ SW+ +I GY GE+ +A +LF +P+++VVSW +I+G+ G +
Sbjct: 216 TTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYE 275
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
A+ + EM G +P++ T+ ++L+AC+ G L G ++H +LD + + + G AL
Sbjct: 276 TAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAI-GTAL 334
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMYAKCG ++ A VF M +D+ +W+ +I G A HG ++I FR+M +P E
Sbjct: 335 VDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDE 394
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLA--------- 421
+ F+ VL AC ++ +V+ G +F MR +Y IEP ++HY + D+ LGR
Sbjct: 395 VVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDL-LGRAGKLNEAHELV 453
Query: 422 -------------------------------NKRLLNMRKDESGDYVLLSNIYASRGEWN 450
++ LL + + G Y+ L +AS+G
Sbjct: 454 ENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQ 513
Query: 451 RVEKVRKLMDDSDIKKQPGCSLIEADDK 478
VEK R + ++ G S IE D +
Sbjct: 514 DVEKRRLSLQKRIKERSLGWSYIELDGQ 541
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325
PD+ +SL+ AC D L + VH +L GV L+ + S + ++
Sbjct: 27 PDESHFISLIHACKDTASL---RHVHAQIL--RRGVLSSRVAAQLVSCSSLLKSPDYSLS 81
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
+F +R+ + LI GL + E S+ F M RL V+P +TF VL + S G
Sbjct: 82 IFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLG 140
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 248 bits (633), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 150/519 (28%), Positives = 258/519 (49%), Gaps = 84/519 (16%)
Query: 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEP 68
S + K +L LKQ+Q+ + ++G + +L+ ++ + ++YA +F + + P
Sbjct: 28 SAVISKSRHLNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRLCN-LSYARFIFDRFSFP 86
Query: 69 DTFMYNTIIRGSAQSQNPLDAV----FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124
+T +Y ++ + S PL A F + + +PN F + VLK+ L
Sbjct: 87 NTHLYAAVLTAYSSSL-PLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFST 145
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
VH + K GF V+ +L++ +A SS++
Sbjct: 146 PLVHTHLFKSGFHLYVVVQTALLHSYA-----------------------SSVS------ 176
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+++AR LFDEM R++VSW M++GYA+ G++ A LF ++P+RDV SWNA+++
Sbjct: 177 -HITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACT 235
Query: 245 LCGMNKQALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL--DMTSGV 301
G+ +A+ +F M RP++VT++ +L+ACA G L++ K +H D++S
Sbjct: 236 QNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSS-- 293
Query: 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361
V N+L+D+Y KCG++E A VF + ++ W+++I A HG +EE+IA+F EM
Sbjct: 294 -DVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEM 352
Query: 362 QRLK---VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------- 410
+L ++P ITF+G+L AC+H G V +G+ YF LM + + IEP I HYG
Sbjct: 353 MKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGR 412
Query: 411 -------------------------------VHGDVELGRLANKRLLNMRKDESGDYVLL 439
+HG ++L +A K L+ + + G ++
Sbjct: 413 AGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMM 472
Query: 440 SNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+N+Y G W + RK++ + K PG S IE D++
Sbjct: 473 ANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEIDNE 511
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 168/552 (30%), Positives = 268/552 (48%), Gaps = 90/552 (16%)
Query: 11 LWKKC---TNLRTLKQIQALVTINGFNSDSSALREL--IYSGSVVIPGAINYAHKMFVKI 65
L K C LR K+I L+ +GF+ D A+ L +Y+ +N A K+F ++
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKC----RQVNEARKVFDRM 196
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
E D +NTI+ G +Q+ A+ + M + ++KP+ T VL A + L ++G
Sbjct: 197 PERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGK 256
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG ++ GF+ + +L+ +A CG L TA LFDG + +VV+W+S+ Y +
Sbjct: 257 EIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNE 316
Query: 186 ELSMARSLFDEM------PV---------------------------------RDLVSWN 206
A +F +M P R++ N
Sbjct: 317 NPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVN 376
Query: 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
+I+ Y K E++ A +F ++ R +VSWNAMI G+ G AL F +MRS +P
Sbjct: 377 SLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKP 436
Query: 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIE 325
D T +S++TA A+L K +H + M S + K V AL+DMYAKCG+I A
Sbjct: 437 DTFTYVSVITAIAELSITHHAKWIHGVV--MRSCLDKNVFVTTALVDMYAKCGAIMIARL 494
Query: 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385
+F M +R V+TW+ +I G HGF + ++ +F EMQ+ ++P +TF+ V+ ACSH+G
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGL 554
Query: 386 VEEGKKYFKLMRDEYNIEPNIRHYG----------------------------------- 410
VE G K F +M++ Y+IE ++ HYG
Sbjct: 555 VEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAML 614
Query: 411 ----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466
+H +V A +RL + D+ G +VLL+NIY + W +V +VR M ++K
Sbjct: 615 GACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRK 674
Query: 467 QPGCSLIEADDK 478
PGCS++E ++
Sbjct: 675 TPGCSMVEIKNE 686
Score = 185 bits (469), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 215/426 (50%), Gaps = 46/426 (10%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H ++ L ++C++L+ L+QI LV NG + +L+ G+++ A ++F I
Sbjct: 38 HPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLV--SLFCRYGSVDEAARVFEPI 95
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
+Y+T+++G A+ + A+ + +M ++P + F+++LK C +G
Sbjct: 96 DSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGK 155
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+HG +VK GF + F L +A C +N A +FD + D+V+W+++ AGY++ G
Sbjct: 156 EIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNG 215
Query: 186 ----ELSMARSLFDE------------MPVRD---LVSWNVMITG--------------- 211
L M +S+ +E +P L+S I G
Sbjct: 216 MARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIST 275
Query: 212 -----YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266
YAK G +E A +LF+ + +R+VVSWN+MI YV K+A+ +F++M G +P
Sbjct: 276 ALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKP 335
Query: 267 DDVTMLSLLTACADLGDLEVGKKVH--CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
DV+++ L ACADLGDLE G+ +H L + V+ V N+LI MY KC ++ A
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVV---NSLISMYCKCKEVDTAA 392
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
+F ++ R + +W+ +I G A +G +++ F +M+ V+P T+V V+ A +
Sbjct: 393 SMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELS 452
Query: 385 KVEEGK 390
K
Sbjct: 453 ITHHAK 458
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 154/536 (28%), Positives = 253/536 (47%), Gaps = 82/536 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
+ I LV +G+ D L+ G + ++F ++ E D +NT+I
Sbjct: 127 RMIHTLVVKSGYVCDVVVASSLV--GMYAKFNLFENSLQVFDEMPERDVASWNTVISCFY 184
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
QS A+ L+ +ME +PN + + + AC+RLL+ G +H K VK GFE + +
Sbjct: 185 QSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEY 244
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM---- 197
V ++L+ + C L A +F + +VAW+S+ GY +G+ + + M
Sbjct: 245 VNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEG 304
Query: 198 ------------------------------PVRDLVSWNV-----MITGYAKQGEMEKAN 222
+R +V+ ++ +I Y K GE A
Sbjct: 305 TRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAE 364
Query: 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+F++ K SWN MIS Y+ G +A+E++++M SVG +PD VT S+L AC+ L
Sbjct: 365 TVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLA 424
Query: 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
LE GK++H ++ + ++L +AL+DMY+KCG+ + A +F + +DV +W+ +I
Sbjct: 425 ALEKGKQIHLSISESRLETDELLL-SALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMI 483
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
HG E++ F EMQ+ ++P +T + VL AC HAG ++EG K+F MR +Y I
Sbjct: 484 SAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGI 543
Query: 403 EPNIRHYG----------------------------------------VHGDVELGRLAN 422
EP I HY +H + LG
Sbjct: 544 EPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIA 603
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ L+ D++ Y++L N+YAS W+ +VR M + ++K+PGCS IE DK
Sbjct: 604 RLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDK 659
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 13/230 (5%)
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKR-DVVSWNAMISGYVLCGMNKQALEMFEE 258
RD+V +I Y + A +F R DV WN+++SGY M LE+F+
Sbjct: 37 RDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKR 96
Query: 259 MRSVGE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
+ + PD T +++ A LG +G+ +H TL+ + V V+ ++L+ MYAK
Sbjct: 97 LLNCSICVPDSFTFPNVIKAYGALGREFLGRMIH-TLVVKSGYVCDVVVASSLVGMYAKF 155
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
E +++VF M +RDV++W+T+I G AE+++ +F M+ P ++ +
Sbjct: 156 NLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAI 215
Query: 378 VACSHAGKVEEG--------KKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419
ACS +E G KK F+L DEY + YG +E+ R
Sbjct: 216 SACSRLLWLERGKEIHRKCVKKGFEL--DEYVNSALVDMYGKCDCLEVAR 263
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 243 bits (621), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/409 (34%), Positives = 219/409 (53%), Gaps = 84/409 (20%)
Query: 166 DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS--------------------- 204
+ ++V W++L GYA G A SL+ EM V LV
Sbjct: 80 EKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRL 139
Query: 205 -------------------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245
N ++ YA G++ A ++F+++P++D+V+WN++I+G+
Sbjct: 140 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305
G ++AL ++ EM S G +PD T++SLL+ACA +G L +GK+VH ++ + G+ + L
Sbjct: 200 NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV--GLTRNL 257
Query: 306 HG-NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
H N L+D+YA+CG +E A +F M D++ +W++LI GLA +GF +E+I +F+ M+
Sbjct: 258 HSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMEST 317
Query: 365 K-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
+ + P EITFVG+L ACSH G V+EG +YF+ MR+EY IEP I H+G
Sbjct: 318 EGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVK 377
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
VHGD +L A ++L + + SGDYVLLSN+YA
Sbjct: 378 KAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYA 437
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
S W+ V+K+RK M +KK PG SL+E ++ ++L K P S
Sbjct: 438 SEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVH-EFLMGDKSHPQS 485
Score = 185 bits (469), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 212/410 (51%), Gaps = 56/410 (13%)
Query: 13 KKCTNL---------RTLKQIQALVTINGFN-SDSSALRELI-YSGSVVIPGAINYAHKM 61
+KC NL L+QI A +G + SD+ + LI Y S+ P ++YAHK+
Sbjct: 16 EKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKV 75
Query: 62 FVKITEP-DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLL 119
F KI +P + F++NT+IRG A+ N + A LY +M ++P+ T+ F++KA T +
Sbjct: 76 FSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMA 135
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
+G +H +++ GF +V+NSL++ +ANCGD+ +A +FD + D+VAW+S+
Sbjct: 136 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 195
Query: 180 GYARRGELSMARSLFDEM------P---------------------------------VR 200
G+A G+ A +L+ EM P R
Sbjct: 196 GFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTR 255
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
+L S NV++ YA+ G +E+A LF+E+ ++ VSW ++I G + G K+A+E+F+ M
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYME 315
Query: 261 SV-GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
S G P ++T + +L AC+ G ++ G + + + ++ H ++D+ A+ G
Sbjct: 316 STEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQ 375
Query: 320 IERAIEVFLGMR-DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
+++A E M +V W TL+G HG + +A F +Q L++ P
Sbjct: 376 VKKAYEYIKSMPMQPNVVIWRTLLGACTVHG--DSDLAEFARIQILQLEP 423
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 243 bits (620), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 156/515 (30%), Positives = 249/515 (48%), Gaps = 80/515 (15%)
Query: 57 YAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACT 116
Y++ +F P+ F+YN++I G + + + L+ + K + + FTF VLKACT
Sbjct: 63 YSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACT 122
Query: 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSS 176
R R +G +H +VK GF + SL+ ++ G LN A LFD VV W++
Sbjct: 123 RASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTA 182
Query: 177 LTAGYARRGELSMARSLFDEM--------------------PVRDLVS--WNV------- 207
L +GY G A LF +M V DL S W V
Sbjct: 183 LFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME 242
Query: 208 ----------MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFE 257
++ YAK G+MEKA +F+ + ++D+V+W+ MI GY K+ +E+F
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFL 302
Query: 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317
+M +PD +++ L++CA LG L++G+ +L+D + + NALIDMYAKC
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEW-GISLIDRHEFLTNLFMANALIDMYAKC 361
Query: 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377
G++ R EVF M+++D+ + I GLA +G + S A+F + ++L + P TF+G+L
Sbjct: 362 GAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLL 421
Query: 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------- 410
C HAG +++G ++F + Y ++ + HYG
Sbjct: 422 CGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPN 481
Query: 411 --VHG----------DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
V G D +L K L+ + +G+YV LSNIY+ G W+ +VR +
Sbjct: 482 AIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDM 541
Query: 459 MDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
M+ +KK PG S IE + K ++L + K P S
Sbjct: 542 MNKKGMKKIPGYSWIELEGKVH-EFLADDKSHPLS 575
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 132/285 (46%), Gaps = 18/285 (6%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F + E D ++T+I+G A + P + + L+ QM + ++KP++F+ L
Sbjct: 261 GKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFL 320
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+C L ++G I ++ F N F+ N+LI +A CG + +F + D+V
Sbjct: 321 SSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIV 380
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEV 228
++ +G A+ G + ++ ++F + D ++ ++ G G ++ FN +
Sbjct: 381 IMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAI 440
Query: 229 P-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
KR V + M+ + GM A + +M RP+ + +LL+ C + D
Sbjct: 441 SCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPM---RPNAIVWGALLSGCRLVKD 497
Query: 284 LEVGKKVHCTLLDMTSGVAKVLHGN--ALIDMYAKCGSIERAIEV 326
++ + V L+ + A GN L ++Y+ G + A EV
Sbjct: 498 TQLAETVLKELIALEPWNA----GNYVQLSNIYSVGGRWDEAAEV 538
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 159/538 (29%), Positives = 267/538 (49%), Gaps = 87/538 (16%)
Query: 23 QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQ 82
Q+ +V NG + LI + G + A +F K +N++I G A
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLI--NLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 272
Query: 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFV 142
+ L+A+ ++ M ++ ++ +F+ V+K C L +H +VKYGF F++ +
Sbjct: 273 NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI 332
Query: 143 RNSLIYFHANCGDLNTASVLFDGDAKM-DVVAWSSLTAGYARRGELSMARSLFDEM---- 197
R +L+ ++ C + A LF + +VV+W+++ +G+ + A LF EM
Sbjct: 333 RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKG 392
Query: 198 ---------------PV----------------RDLVSWNVMITGYAKQGEMEKANELFN 226
PV R ++ Y K G++E+A ++F+
Sbjct: 393 VRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS 452
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL-GDLE 285
+ +D+V+W+AM++GY G + A++MF E+ G +P++ T S+L CA +
Sbjct: 453 GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMG 512
Query: 286 VGKKVHC----TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTL 341
GK+ H + LD + V+ +AL+ MYAK G+IE A EVF R++D+ +W+++
Sbjct: 513 QGKQFHGFAIKSRLDSSLCVS-----SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSM 567
Query: 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401
I G A HG A +++ +F+EM++ KV+ +TF+GV AC+HAG VEEG+KYF +M +
Sbjct: 568 ISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK 627
Query: 402 IEPNIRHYG---------------------------------------VHGDVELGRLAN 422
I P H VH ELGRLA
Sbjct: 628 IAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAA 687
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480
++++ M+ ++S YVLLSN+YA G+W KVRKLM++ ++KK+PG S IE +K +
Sbjct: 688 EKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTY 745
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 177/374 (47%), Gaps = 46/374 (12%)
Query: 60 KMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119
K+F ++ E + + T+I G A++ + + L+ +M+ +PN FTF+ L
Sbjct: 149 KVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEG 208
Query: 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179
G VH +VK G + V NSLI + CG++ A +LFD VV W+S+ +
Sbjct: 209 VGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMIS 268
Query: 180 GYARRG----ELSMARSL--------------------------FDEMPVRDLVSW---- 205
GYA G L M S+ F E +V +
Sbjct: 269 GYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLF 328
Query: 206 -----NVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
++ Y+K M A LF E+ +VVSW AMISG++ ++A+++F EM
Sbjct: 329 DQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEM 388
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
+ G RP++ T +LTA + EV +V T + +S V G AL+D Y K G
Sbjct: 389 KRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTV-----GTALLDAYVKLGK 443
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
+E A +VF G+ D+D+ WS ++ G A G E +I MF E+ + ++P E TF +L
Sbjct: 444 VEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNV 503
Query: 380 CSHA-GKVEEGKKY 392
C+ + +GK++
Sbjct: 504 CAATNASMGQGKQF 517
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 170/377 (45%), Gaps = 43/377 (11%)
Query: 44 IYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP 103
IY V + AH +F K D Y +++ G ++ +A L+ + + ++
Sbjct: 32 IYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEM 91
Query: 104 NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF 163
+ FS VLK L G +H + +K+GF + V SL+ + + +F
Sbjct: 92 DCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVF 151
Query: 164 DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPV------------------------ 199
D + +VV W++L +GYAR +LF M
Sbjct: 152 DEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGG 211
Query: 200 ---------------RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+ + N +I Y K G + KA LF++ + VV+WN+MISGY
Sbjct: 212 RGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYA 271
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G++ +AL MF MR R + + S++ CA+L +L +++HC+++ +
Sbjct: 272 ANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQN 331
Query: 305 LHGNALIDMYAKCGSIERAIEVF--LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
+ AL+ Y+KC ++ A+ +F +G +V +W+ +I G + EE++ +F EM+
Sbjct: 332 IR-TALMVAYSKCTAMLDALRLFKEIGCVG-NVVSWTAMISGFLQNDGKEEAVDLFSEMK 389
Query: 363 RLKVRPTEITFVGVLVA 379
R VRP E T+ +L A
Sbjct: 390 RKGVRPNEFTYSVILTA 406
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 42/267 (15%)
Query: 156 LNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF--------------------- 194
L A LFD D ++ SL G++R G A+ LF
Sbjct: 43 LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102
Query: 195 -----DEMPVR-------------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW 236
DE+ R D+ ++ Y K + ++F+E+ +R+VV+W
Sbjct: 103 SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTW 162
Query: 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296
+ISGY MN + L +F M++ G +P+ T + L A+ G G +VH ++
Sbjct: 163 TTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 222
Query: 297 MTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
+G+ K + N+LI++Y KCG++ +A +F + V TW+++I G A +G E++
Sbjct: 223 --NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEAL 280
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSH 382
MF M+ VR +E +F V+ C++
Sbjct: 281 GMFYSMRLNYVRLSESSFASVIKLCAN 307
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 1/174 (0%)
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
G + A+ LF++ P RD S+ +++ G+ G ++A +F + +G D
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
S+L A L D G+++HC + + V G +L+D Y K + + +VF M
Sbjct: 96 FSSVLKVSATLCDELFGRQLHCQCIKF-GFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEM 154
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
++R+V TW+TLI G A + +E + +F MQ +P TF L + G
Sbjct: 155 KERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEG 208
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/429 (33%), Positives = 216/429 (50%), Gaps = 77/429 (17%)
Query: 93 YTQMEKCSIKPNKFTFSFVLKACTRLLYRN--MGFCVHGKIVKYGFEFNRFVRNSLIYFH 150
++ M ++PN TF +L C + +G +HG K G + N
Sbjct: 59 FSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNH---------- 108
Query: 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMIT 210
V+ +++ Y++RG AR +FD M ++ V+WN MI
Sbjct: 109 --------------------VMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMID 148
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
GY + G+++ A ++F+++P+RD++SW AMI+G+V G ++AL F EM+ G +PD V
Sbjct: 149 GYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVA 208
Query: 271 MLSLLTACADLGDLEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
+++ L AC +LG L G VH +L D + V N+LID+Y +CG +E A +VF
Sbjct: 209 IIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRV---SNSLIDLYCRCGCVEFARQVFY 265
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
M R V +W+++I G A +G A ES+ FR+MQ +P +TF G L ACSH G VEE
Sbjct: 266 NMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEE 325
Query: 389 GKKYFKLMRDEYNIEPNIRHYGVHGDV--ELGRLAN------------------------ 422
G +YF++M+ +Y I P I HYG D+ GRL +
Sbjct: 326 GLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAAC 385
Query: 423 --------------KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
K L ++ +YV+LSN+YA+ G+W K+R+ M +KKQP
Sbjct: 386 SNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQP 445
Query: 469 GCSLIEADD 477
G S IE DD
Sbjct: 446 GFSSIEIDD 454
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 25/286 (8%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G ++ A KMF K+ E D + +I G + +A+ + +M+ +KP+ L
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
ACT L + G VH ++ F+ N V NSLI + CG + A +F K VV
Sbjct: 214 NACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVV 273
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAKQGEMEKANELFNEV 228
+W+S+ G+A G + F +M + D V++ +T + G +E+ F ++
Sbjct: 274 SWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYF-QI 332
Query: 229 PKRD------VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
K D + + ++ Y G + AL++ + M +P++V + SLL AC++ G
Sbjct: 333 MKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPM---KPNEVVIGSLLAACSNHG 389
Query: 283 -DLEVGKKV--HCTLLDMTSGVAKVLHGNALI--DMYAKCGSIERA 323
++ + +++ H T L++ S H N +I +MYA G E A
Sbjct: 390 NNIVLAERLMKHLTDLNVKS------HSNYVILSNMYAADGKWEGA 429
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 239 bits (611), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 165/533 (30%), Positives = 253/533 (47%), Gaps = 85/533 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
KQI A + G D+S + LI S V G + AHK+F + + + T++ G
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLI--DSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYK 326
Query: 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF 141
Q+ +A+ L+T M K +KP+ + S +L +C L G VH +K + +
Sbjct: 327 QNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSY 386
Query: 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG---ELSMARSLFDEMP 198
V NSLI +A C L A +FD A DVV ++++ GY+R G EL A ++F +M
Sbjct: 387 VTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMR 446
Query: 199 VR---------------------------------------DLVSWNVMITGYAKQGEME 219
R D+ + + +I Y+ ++
Sbjct: 447 FRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLK 506
Query: 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279
+ +F+E+ +D+V WN+M +GYV N++AL +F E++ ERPD+ T +++TA
Sbjct: 507 DSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAG 566
Query: 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339
+L +++G++ HC LL + NAL+DMYAKCGS E A + F RDV W+
Sbjct: 567 NLASVQLGQEFHCQLLKRGLECNPYI-TNALLDMYAKCGSPEDAHKAFDSAASRDVVCWN 625
Query: 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399
++I A HG ++++ M +M + P ITFVGVL ACSHAG VE+G K F+LM
Sbjct: 626 SVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML-R 684
Query: 400 YNIEPNIRHY---------------------------------------GVHGDVELGRL 420
+ IEP HY G+VEL
Sbjct: 685 FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEH 744
Query: 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
A + + +SG + +LSNIYAS+G W +KVR+ M + K+PG S I
Sbjct: 745 AAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWI 797
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 200/432 (46%), Gaps = 56/432 (12%)
Query: 23 QIQALVTINGFNSDSSALRELIYSGSVVIP-----GAINYAHKMFVKITEPDTFMYNTII 77
Q+Q+ + +GF+ D +Y G+++I G I+YA +F + E T + T+I
Sbjct: 169 QLQSFLVKSGFDRD-------VYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMI 221
Query: 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137
G + ++ L+ Q+ + ++ P+ + S VL AC+ L + G +H I++YG E
Sbjct: 222 SGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLE 281
Query: 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM 197
+ + N LI + CG + A LF+G ++++W++L +GY + A LF M
Sbjct: 282 MDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSM 341
Query: 198 PV---------------------------------------RDLVSWNVMITGYAKQGEM 218
D N +I YAK +
Sbjct: 342 SKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCL 401
Query: 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMN---KQALEMFEEMRSVGERPDDVTMLSLL 275
A ++F+ DVV +NAMI GY G +AL +F +MR RP +T +SLL
Sbjct: 402 TDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLL 461
Query: 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV 335
A A L L + K++H + + + G+ALID+Y+ C ++ + VF M+ +D+
Sbjct: 462 RASASLTSLGLSKQIHGLMFKYGLNL-DIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDL 520
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYF-K 394
W+++ G EE++ +F E+Q + RP E TF ++ A + V+ G+++ +
Sbjct: 521 VIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQ 580
Query: 395 LMRDEYNIEPNI 406
L++ P I
Sbjct: 581 LLKRGLECNPYI 592
Score = 141 bits (356), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 186/389 (47%), Gaps = 46/389 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-SIKPNKFTFSFV 111
G + YA K+F K+ E + ++T++ +++ ++ + + PN++ S
Sbjct: 93 GGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSF 152
Query: 112 LKACTRLLYRN--MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM 169
++AC+ L R M F + +VK GF+ + +V LI F+ G+++ A ++FD +
Sbjct: 153 IQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEK 212
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVS------------------------- 204
V W+++ +G + G ++ LF ++ ++V
Sbjct: 213 STVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIH 272
Query: 205 --------------WNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
NV+I Y K G + A++LFN +P ++++SW ++SGY ++K
Sbjct: 273 AHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHK 332
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
+A+E+F M G +PD S+LT+CA L L G +VH + G + N+L
Sbjct: 333 EAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYV-TNSL 391
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA---EESIAMFREMQRLKVR 367
IDMYAKC + A +VF DV ++ +I G + G E++ +FR+M+ +R
Sbjct: 392 IDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIR 451
Query: 368 PTEITFVGVLVACSHAGKVEEGKKYFKLM 396
P+ +TFV +L A + + K+ LM
Sbjct: 452 PSLLTFVSLLRASASLTSLGLSKQIHGLM 480
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 150/317 (47%), Gaps = 55/317 (17%)
Query: 112 LKACTRLL-YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170
L+A LL Y+N+ VHG+I+ +G E + ++ N LI ++ G + A +F+ + +
Sbjct: 53 LRASDDLLHYQNV---VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERN 109
Query: 171 VVAWSSLTAGYARRG--------------------------------------------- 185
+V+WS++ + G
Sbjct: 110 LVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQ 169
Query: 186 -ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+ + +S FD RD+ ++I Y K G ++ A +F+ +P++ V+W MISG V
Sbjct: 170 LQSFLVKSGFD----RDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCV 225
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G + +L++F ++ PD + ++L+AC+ L LE GK++H +L +
Sbjct: 226 KMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDAS 285
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
L N LID Y KCG + A ++F GM ++++ +W+TL+ G + +E++ +F M +
Sbjct: 286 LM-NVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKF 344
Query: 365 KVRPTEITFVGVLVACS 381
++P +L +C+
Sbjct: 345 GLKPDMYACSSILTSCA 361
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 137/286 (47%), Gaps = 23/286 (8%)
Query: 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAIN-YAHK----MFVKITEPDT 70
T+L KQI L+ G N D I++GS +I N Y K +F ++ D
Sbjct: 468 TSLGLSKQIHGLMFKYGLNLD-------IFAGSALIDVYSNCYCLKDSRLVFDEMKVKDL 520
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
++N++ G Q +A+ L+ +++ +P++FTF+ ++ A L +G H +
Sbjct: 521 VIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQ 580
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE---- 186
++K G E N ++ N+L+ +A CG A FD A DVV W+S+ + YA GE
Sbjct: 581 LLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKA 640
Query: 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK----RDVVSWNAMISG 242
L M + E + +++ +++ + G +E + F + + + + M+S
Sbjct: 641 LQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSL 700
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288
G +A E+ E+M + +P + SLL+ CA G++E+ +
Sbjct: 701 LGRAGRLNKARELIEKMPT---KPAAIVWRSLLSGCAKAGNVELAE 743
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 12/214 (5%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM-RSVGE 264
N++I Y++ G M A ++F ++P+R++VSW+ M+S G+ +++L +F E R+ +
Sbjct: 83 NILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKD 142
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERA 323
P++ + S + AC+ L + SG + V G LID Y K G+I+ A
Sbjct: 143 SPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYA 202
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
VF + ++ TW+T+I G G + S+ +F ++ V P VL ACS
Sbjct: 203 RLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSIL 262
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVEL 417
+E GK+ I +I YG+ D L
Sbjct: 263 PFLEGGKQ----------IHAHILRYGLEMDASL 286
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 239 bits (610), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 166/554 (29%), Positives = 253/554 (45%), Gaps = 87/554 (15%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM 72
K C + +I L GF D LI+ S A+ A +F ++ D
Sbjct: 161 KACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRY--KAVGNARILFDEMPVRDMGS 218
Query: 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132
+N +I G QS N +A+ L + + T +L ACT N G +H +
Sbjct: 219 WNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSI 274
Query: 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARS 192
K+G E FV N LI +A G L +FD D+++W+S+ Y + A S
Sbjct: 275 KHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIS 334
Query: 193 LFDEMPV----------------------------------------RDLVSWNVMITGY 212
LF EM + D+ N ++ Y
Sbjct: 335 LFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMY 394
Query: 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTM 271
AK G ++ A +FN +P DV+SWN +ISGY G +A+EM+ M GE + T
Sbjct: 395 AKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTW 454
Query: 272 LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331
+S+L AC+ G L G K+H LL V +L DMY KCG +E A+ +F +
Sbjct: 455 VSVLPACSQAGALRQGMKLHGRLLK-NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP 513
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
+ W+TLI FHG E+++ +F+EM V+P ITFV +L ACSH+G V+EG+
Sbjct: 514 RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQW 573
Query: 392 YFKLMRDEYNIEPNIRHYG---------------------------------------VH 412
F++M+ +Y I P+++HYG VH
Sbjct: 574 CFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVH 633
Query: 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472
G+V+LG++A++ L + + G +VLLSN+YAS G+W V+++R + ++K PG S
Sbjct: 634 GNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSS 693
Query: 473 IEADDKAFLQYLFN 486
+E D+K + Y N
Sbjct: 694 MEVDNKVEVFYTGN 707
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 207/422 (49%), Gaps = 50/422 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV----IPGAINYAHKMFVKIT 66
L++ CTNL++ K + A + + S ++ + S +V G + A F I
Sbjct: 60 LFRYCTNLQSAKCLHARLVV------SKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQ 113
Query: 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQ-MEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125
D + +N +I G ++ N + + ++ M + P+ TF VLKAC ++ N
Sbjct: 114 NRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK-- 171
Query: 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG 185
+H +K+GF ++ +V SLI+ ++ + A +LFD D+ +W+++ +GY + G
Sbjct: 172 -IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSG 230
Query: 186 ELSMARSL------FDEMPVRDLVSW-----------------------------NVMIT 210
A +L D + V L+S N +I
Sbjct: 231 NAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLID 290
Query: 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT 270
YA+ G + ++F+ + RD++SWN++I Y L +A+ +F+EMR +PD +T
Sbjct: 291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLT 350
Query: 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
++SL + + LGD+ + V L + + GNA++ MYAK G ++ A VF +
Sbjct: 351 LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410
Query: 331 RDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL-KVRPTEITFVGVLVACSHAGKVEEG 389
+ DV +W+T+I G A +GFA E+I M+ M+ ++ + T+V VL ACS AG + +G
Sbjct: 411 PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG 470
Query: 390 KK 391
K
Sbjct: 471 MK 472
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 239 bits (610), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 157/510 (30%), Positives = 252/510 (49%), Gaps = 83/510 (16%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
GA+ A ++F ++ + D +NTII Q +N +A L+ +M C I + + L
Sbjct: 477 GALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTL 536
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
KACT + G VH VK G + + +SLI ++ CG + A +F + VV
Sbjct: 537 KACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVV 596
Query: 173 AWSSLTAGYARRGELSMARSLFDEMPVRDL-----------------------VSWNVMI 209
+ ++L AGY++ L A LF EM R + ++ I
Sbjct: 597 SMNALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQI 655
Query: 210 T--GYAKQGE---------------MEKANELFNEVPK-RDVVSWNAMISGYVLCGMNKQ 251
T G++ +GE M +A LF+E+ + +V W M+SG+ G ++
Sbjct: 656 TKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEE 715
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
AL+ ++EMR G PD T +++L C+ L L G+ +H + + + + L N LI
Sbjct: 716 ALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDE-LTSNTLI 774
Query: 312 DMYAKCGSIERAIEVFLGMRDR-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
DMYAKCG ++ + +VF MR R +V +W++LI G A +G+AE+++ +F M++ + P E
Sbjct: 775 DMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDE 834
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
ITF+GVL ACSHAGKV +G+K F++M +Y IE + H
Sbjct: 835 ITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIE 894
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
+HGD G ++ ++L+ + S YVLLSNIYAS+G W +
Sbjct: 895 AQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEK 954
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEADDKAFL 481
+RK+M D +KK PG S I+ + + +
Sbjct: 955 ANALRKVMRDRGVKKVPGYSWIDVEQRTHI 984
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 179/380 (47%), Gaps = 43/380 (11%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + A +F +++ PD +N +I G + A+ + M K S+K + T VL
Sbjct: 275 GKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVL 334
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
A + ++G VH + +K G N +V +SL+ ++ C + A+ +F+ + + V
Sbjct: 335 SAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDV 394
Query: 173 AWSSLTAGYARRGELSMARSLFDEMP---------------------------------- 198
W+++ GYA GE LF +M
Sbjct: 395 FWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSII 454
Query: 199 -----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
++L N ++ YAK G +E A ++F + RD V+WN +I YV +A
Sbjct: 455 IKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAF 514
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALID 312
++F+ M G D + S L AC + L GK+VHC L + G+ + LH G++LID
Sbjct: 515 DLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHC--LSVKCGLDRDLHTGSSLID 572
Query: 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372
MY+KCG I+ A +VF + + V + + LI G + + EE++ +F+EM V P+EIT
Sbjct: 573 MYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEIT 631
Query: 373 FVGVLVACSHAGKVEEGKKY 392
F ++ AC + G ++
Sbjct: 632 FATIVEACHKPESLTLGTQF 651
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 177/347 (51%), Gaps = 8/347 (2%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
++YA K F E D +N+++ + P + + + + I PNKFTFS VL
Sbjct: 111 VSYAEKQF-DFLEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLST 169
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C R G +H ++K G E N + +L+ +A C ++ A +F+ + V W
Sbjct: 170 CARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCW 229
Query: 175 SSLTAGYARRGELSMARSLF----DEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230
+ L +GY + G A +F DE D +++ +I Y + G+++ A LF E+
Sbjct: 230 TCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSS 289
Query: 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290
DVV+WN MISG+ G A+E F MR + T+ S+L+A + +L++G V
Sbjct: 290 PDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVV 349
Query: 291 HCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
H + + G+A ++ G++L+ MY+KC +E A +VF + +++ W+ +I G A +G
Sbjct: 350 HAEAIKL--GLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNG 407
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396
+ + + +F +M+ + TF +L C+ + +E G ++ ++
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSII 454
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 169/377 (44%), Gaps = 77/377 (20%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I+ A ++F I +P+T + + G ++ P +AV ++ +M +P+ F V+
Sbjct: 211 ISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINT 270
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
RL G L A +LF + DVVAW
Sbjct: 271 YIRL-----------------------------------GKLKDARLLFGEMSSPDVVAW 295
Query: 175 SSLTAGYARRGELSMARSLFDEM----------------------------------PVR 200
+ + +G+ +RG ++A F M ++
Sbjct: 296 NVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIK 355
Query: 201 DLVSWNV-----MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255
++ N+ +++ Y+K +ME A ++F + +++ V WNAMI GY G + + +E+
Sbjct: 356 LGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMEL 415
Query: 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMY 314
F +M+S G DD T SLL+ CA DLE+G + H ++ +AK L GNAL+DMY
Sbjct: 416 FMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIII--KKKLAKNLFVGNALVDMY 473
Query: 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374
AKCG++E A ++F M DRD TW+T+IG E+ +F+ M +
Sbjct: 474 AKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLA 533
Query: 375 GVLVACSHAGKVEEGKK 391
L AC+H + +GK+
Sbjct: 534 STLKACTHVHGLYQGKQ 550
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 125/268 (46%), Gaps = 27/268 (10%)
Query: 186 ELSMARSLFDEMPVRDLVSW----------------------NVMITGYAKQGEMEKANE 223
+L +R +FDEMP R ++ N ++ YAK ++ A +
Sbjct: 57 KLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEK 116
Query: 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283
F+ + K DV +WN+M+S Y G + L F + P+ T +L+ CA +
Sbjct: 117 QFDFLEK-DVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETN 175
Query: 284 LEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLI 342
+E G+++HC+++ M G+ + + G AL+DMYAKC I A VF + D + W+ L
Sbjct: 176 VEFGRQIHCSMIKM--GLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLF 233
Query: 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402
G G EE++ +F M+ RP + FV V+ GK+++ + F M +
Sbjct: 234 SGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVV 293
Query: 403 EPNIRHYGVHGDVELGRLANKRLLNMRK 430
N+ G HG +A + NMRK
Sbjct: 294 AWNVMISG-HGKRGCETVAIEYFFNMRK 320
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 145/337 (43%), Gaps = 51/337 (15%)
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
+G VH K + G + + N+++ +A C ++ A FD K DV AW+S+ + Y+
Sbjct: 78 IGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLEK-DVTAWNSMLSMYS 136
Query: 183 RRGE----LSMARSLFDEMPVRDLVSWNVMITG--------------------------- 211
G+ L SLF+ + +++++++
Sbjct: 137 SIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSY 196
Query: 212 --------YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
YAK + A +F + + V W + SGYV G+ ++A+ +FE MR G
Sbjct: 197 CGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEG 256
Query: 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323
RPD + ++++ LG L K +M+S V+ N +I + K G A
Sbjct: 257 HRPDHLAFVTVINTYIRLGKL---KDARLLFGEMSS--PDVVAWNVMISGHGKRGCETVA 311
Query: 324 IEVFLGMRDRDV-STWSTLIGGLAFHGF-AEESIAMFREMQRLKVRPTEITFVG--VLVA 379
IE F MR V ST STL L+ G A + + + +K+ +VG ++
Sbjct: 312 IEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSM 371
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGD 414
S K+E K F+ + ++ ++ N IR Y +G+
Sbjct: 372 YSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGE 408
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 239 bits (609), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 152/493 (30%), Positives = 239/493 (48%), Gaps = 80/493 (16%)
Query: 26 ALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQN 85
AL +G + ++ + G P + AH++F +I EPDTF YN ++ ++ N
Sbjct: 80 ALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVN 139
Query: 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145
A + +M P K S+ N+
Sbjct: 140 FEKAQSFFDRM------PFKDAASW---------------------------------NT 160
Query: 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSW 205
+I +A G++ A LF + + V+W+++ +GY G+L A F PVR +V+W
Sbjct: 161 MITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAW 220
Query: 206 NVMITGYAKQGEMEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264
MITGY K ++E A +F ++ +++V+WNAMISGYV + L++F M G
Sbjct: 221 TAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGI 280
Query: 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324
RP+ + S L C++L L++G+++H ++ ++ V +LI MY KCG + A
Sbjct: 281 RPNSSGLSSALLGCSELSALQLGRQIH-QIVSKSTLCNDVTALTSLISMYCKCGELGDAW 339
Query: 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384
++F M+ +DV W+ +I G A HG A++++ +FREM K+RP ITFV VL+AC+HAG
Sbjct: 340 KLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAG 399
Query: 385 KVEEGKKYFKLMRDEYNIEPNIRHYG---------------------------------- 410
V G YF+ M +Y +EP HY
Sbjct: 400 LVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTL 459
Query: 411 -----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465
VH +VEL A ++LL + + YV L+NIYAS+ W V +VRK M +S++
Sbjct: 460 LGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVV 519
Query: 466 KQPGCSLIEADDK 478
K PG S IE +K
Sbjct: 520 KVPGYSWIEIRNK 532
Score = 35.8 bits (81), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367
N +I + G I+ A+ VF GMR ++ TW++L+ G+ +++ M Q
Sbjct: 65 NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGI-----SKDPSRMMEAHQLFDEI 119
Query: 368 PTEITF-VGVLVAC-SHAGKVEEGKKYFKLM--RDEYNIEPNIRHYGVHGDVELGR 419
P TF ++++C E+ + +F M +D + I Y G++E R
Sbjct: 120 PEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAR 175
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 238 bits (608), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 150/494 (30%), Positives = 240/494 (48%), Gaps = 79/494 (15%)
Query: 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKAC 115
A K+F ++ E DT ++NT+I G +++ ++++ ++ + E C+ + + T +L A
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT-RLDTTTLLDILPAV 231
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
L +G +H K G + +V I ++ CG + S LF K D+VA++
Sbjct: 232 AELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYN 291
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDL------------VSWNVMI-------------- 209
++ GY GE ++ SLF E+ + VS ++M+
Sbjct: 292 AMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFL 351
Query: 210 ----------TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259
T Y+K E+E A +LF+E P++ + SWNAMISGY G+ + A+ +F EM
Sbjct: 352 SHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREM 411
Query: 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319
+ P+ VT+ +L+ACA LG L +GK VH L+ T + + ALI MYAKCGS
Sbjct: 412 QKSEFSPNPVTITCILSACAQLGALSLGKWVH-DLVRSTDFESSIYVSTALIGMYAKCGS 470
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I A +F M ++ TW+T+I G HG +E++ +F EM + PT +TF+ VL A
Sbjct: 471 IAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYA 530
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSHAG V+EG + F M Y EP+++HY
Sbjct: 531 CSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSS 590
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
+H D L R +++L + D G +VLLSNI+++ + + VR+
Sbjct: 591 VWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAK 650
Query: 461 DSDIKKQPGCSLIE 474
+ K PG +LIE
Sbjct: 651 KRKLAKAPGYTLIE 664
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 212/429 (49%), Gaps = 49/429 (11%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
+K+ T++ L Q A + ++GF +D S L +L S + GAI YA +F+ + PD
Sbjct: 26 FFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDL--GAIYYARDIFLSVQRPDV 83
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
F++N ++RG + +++P ++ ++ + K + +KPN T++F + A + G +HG
Sbjct: 84 FLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHG 143
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL-- 187
+ V G + + ++++ + + A +FD + D + W+++ +GY R+ E+
Sbjct: 144 QAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY-RKNEMYV 202
Query: 188 ---SMARSLFDE--------------------------MPVRDLV------SWNVMITG- 211
+ R L +E M + L S + ++TG
Sbjct: 203 ESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF 262
Query: 212 ---YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
Y+K G+++ + LF E K D+V++NAMI GY G + +L +F+E+ G R
Sbjct: 263 ISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRS 322
Query: 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328
T++SL+ G L + +H L ++ ++ AL +Y+K IE A ++F
Sbjct: 323 STLVSLVPVS---GHLMLIYAIHGYCLK-SNFLSHASVSTALTTVYSKLNEIESARKLFD 378
Query: 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388
++ + +W+ +I G +G E++I++FREMQ+ + P +T +L AC+ G +
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438
Query: 389 GKKYFKLMR 397
GK L+R
Sbjct: 439 GKWVHDLVR 447
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 12/252 (4%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
I A K+F + E +N +I G Q+ DA+ L+ +M+K PN T + +L A
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSA 429
Query: 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAW 174
C +L ++G VH + FE + +V +LI +A CG + A LFD K + V W
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTW 489
Query: 175 SSLTAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEVPK 230
+++ +GY G+ A ++F EM + V++ ++ + G +++ +E+FN +
Sbjct: 490 NTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIH 549
Query: 231 R-----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
R V + M+ G ++AL+ E M P +LL AC D
Sbjct: 550 RYGFEPSVKHYACMVDILGRAGHLQRALQFIEAM---SIEPGSSVWETLLGACRIHKDTN 606
Query: 286 VGKKVHCTLLDM 297
+ + V L ++
Sbjct: 607 LARTVSEKLFEL 618
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 15 CTNLRTL---KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
C L L K + LV F S LI G G+I A ++F +T+ +
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFESSIYVSTALI--GMYAKCGSIAEARRLFDLMTKKNEV 487
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-LYRNMGFCVHGK 130
+NT+I G +A+ ++ +M I P TF VL AC+ L + +
Sbjct: 488 TWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSM 547
Query: 131 IVKYGFE 137
I +YGFE
Sbjct: 548 IHRYGFE 554
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,392,967
Number of Sequences: 539616
Number of extensions: 7386289
Number of successful extensions: 25090
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 16391
Number of HSP's gapped (non-prelim): 2655
length of query: 498
length of database: 191,569,459
effective HSP length: 122
effective length of query: 376
effective length of database: 125,736,307
effective search space: 47276851432
effective search space used: 47276851432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)