Query 041942
Match_columns 498
No_of_seqs 544 out of 2774
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 12:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7.3E-73 1.6E-77 587.2 53.3 489 2-496 184-753 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3.7E-66 7.9E-71 524.9 45.4 455 34-496 84-590 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 3.9E-64 8.5E-69 521.9 49.4 460 2-470 83-591 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.7E-61 3.7E-66 493.3 49.5 458 6-469 371-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.1E-60 4.6E-65 485.3 47.4 423 3-429 435-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.9E-58 6.4E-63 467.1 42.4 461 2-475 120-617 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.1E-29 1.3E-33 264.1 46.6 434 16-460 445-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-27 2.2E-32 254.8 47.5 408 47-465 440-869 (899)
9 PRK11447 cellulose synthase su 99.9 4E-21 8.7E-26 205.4 46.4 443 11-461 121-739 (1157)
10 PRK11447 cellulose synthase su 99.9 3.1E-20 6.7E-25 198.7 46.2 371 47-429 278-741 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.7E-21 3.8E-26 178.1 28.4 367 70-449 116-506 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 4E-21 8.6E-26 175.8 28.1 403 52-465 61-488 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-19 2.7E-24 182.3 39.7 380 73-463 130-572 (615)
14 PRK09782 bacteriophage N4 rece 99.9 1.2E-18 2.5E-23 178.7 44.7 208 247-464 490-708 (987)
15 PRK11788 tetratricopeptide rep 99.9 1.8E-20 3.9E-25 179.0 28.7 287 149-471 44-356 (389)
16 PRK11788 tetratricopeptide rep 99.9 6.8E-20 1.5E-24 175.1 27.4 295 80-405 45-352 (389)
17 PRK10049 pgaA outer membrane p 99.9 3E-18 6.6E-23 175.4 40.5 386 47-462 24-456 (765)
18 PRK10049 pgaA outer membrane p 99.9 1.3E-17 2.9E-22 170.7 40.3 389 9-434 22-462 (765)
19 TIGR00990 3a0801s09 mitochondr 99.8 1.4E-17 3E-22 167.6 36.6 377 47-434 136-577 (615)
20 PRK15174 Vi polysaccharide exp 99.8 2.9E-18 6.2E-23 171.9 31.2 339 106-462 43-403 (656)
21 PRK09782 bacteriophage N4 rece 99.8 3.1E-16 6.8E-21 161.0 46.1 432 16-464 58-674 (987)
22 PRK15174 Vi polysaccharide exp 99.8 6.3E-18 1.4E-22 169.5 33.0 366 52-432 18-407 (656)
23 PRK14574 hmsH outer membrane p 99.8 1.1E-16 2.4E-21 161.0 41.1 419 38-463 36-514 (822)
24 PRK14574 hmsH outer membrane p 99.8 1.1E-15 2.5E-20 153.7 40.1 413 14-436 46-521 (822)
25 KOG4422 Uncharacterized conser 99.7 3.2E-14 7E-19 125.5 32.8 378 14-398 127-589 (625)
26 KOG2002 TPR-containing nuclear 99.7 4.7E-14 1E-18 136.6 33.6 261 199-464 449-747 (1018)
27 KOG2002 TPR-containing nuclear 99.7 6.9E-14 1.5E-18 135.5 33.2 393 67-464 267-711 (1018)
28 KOG4422 Uncharacterized conser 99.7 2.2E-13 4.7E-18 120.4 30.1 319 69-401 115-463 (625)
29 KOG0495 HAT repeat protein [RN 99.7 1.7E-12 3.7E-17 120.7 37.0 418 52-476 419-892 (913)
30 KOG1915 Cell cycle control pro 99.7 3.1E-13 6.8E-18 120.9 31.0 403 52-464 86-538 (677)
31 PF13429 TPR_15: Tetratricopep 99.6 1.3E-15 2.9E-20 137.8 11.2 248 207-461 13-276 (280)
32 KOG0547 Translocase of outer m 99.6 1.8E-12 4E-17 116.6 30.5 374 73-460 118-564 (606)
33 KOG2076 RNA polymerase III tra 99.6 4.7E-13 1E-17 129.0 27.6 312 149-461 148-511 (895)
34 KOG2076 RNA polymerase III tra 99.6 1.5E-11 3.2E-16 118.9 34.2 342 52-396 152-552 (895)
35 KOG2003 TPR repeat-containing 99.6 1.1E-12 2.4E-17 116.8 24.3 400 37-447 201-708 (840)
36 KOG1126 DNA-binding cell divis 99.6 2.7E-13 5.9E-18 126.6 20.3 270 184-465 332-623 (638)
37 PRK10747 putative protoheme IX 99.6 3.9E-12 8.4E-17 120.6 27.3 240 116-363 129-389 (398)
38 PRK10747 putative protoheme IX 99.6 9.4E-12 2E-16 118.0 29.1 215 241-461 161-389 (398)
39 KOG0495 HAT repeat protein [RN 99.5 4.7E-10 1E-14 104.8 37.5 420 23-463 367-847 (913)
40 KOG2003 TPR repeat-containing 99.5 3.4E-12 7.4E-17 113.8 22.8 375 19-401 218-691 (840)
41 KOG1915 Cell cycle control pro 99.5 9.8E-11 2.1E-15 105.2 31.7 394 69-472 72-510 (677)
42 PF13429 TPR_15: Tetratricopep 99.5 6.7E-14 1.5E-18 126.7 10.5 160 235-397 112-275 (280)
43 TIGR00540 hemY_coli hemY prote 99.5 2.9E-11 6.3E-16 115.3 28.7 274 183-461 96-398 (409)
44 TIGR00540 hemY_coli hemY prote 99.5 2E-11 4.3E-16 116.5 27.4 276 82-361 96-396 (409)
45 KOG1155 Anaphase-promoting com 99.5 1.3E-10 2.9E-15 104.1 29.7 297 114-428 236-553 (559)
46 KOG1126 DNA-binding cell divis 99.5 4.2E-12 9.1E-17 118.8 19.9 270 120-398 334-619 (638)
47 COG2956 Predicted N-acetylgluc 99.5 4.1E-11 8.9E-16 102.5 23.4 286 153-472 48-357 (389)
48 KOG4318 Bicoid mRNA stability 99.5 1.1E-10 2.3E-15 112.6 28.2 89 22-124 10-102 (1088)
49 COG3071 HemY Uncharacterized e 99.5 1.9E-10 4.2E-15 101.5 26.8 273 83-362 97-388 (400)
50 KOG1155 Anaphase-promoting com 99.4 3.8E-10 8.2E-15 101.3 26.8 314 137-461 161-494 (559)
51 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.7E-14 96.5 28.5 279 153-465 97-393 (400)
52 COG2956 Predicted N-acetylgluc 99.4 4E-10 8.7E-15 96.6 24.6 285 83-398 48-346 (389)
53 PF13041 PPR_2: PPR repeat fam 99.4 1.5E-12 3.1E-17 82.9 6.1 50 68-117 1-50 (50)
54 KOG2047 mRNA splicing factor [ 99.3 8.2E-08 1.8E-12 90.1 37.0 245 203-450 388-711 (835)
55 KOG1129 TPR repeat-containing 99.3 2.1E-10 4.6E-15 98.3 17.8 223 236-464 226-460 (478)
56 KOG2376 Signal recognition par 99.3 1.9E-08 4.1E-13 93.4 31.0 138 319-459 356-517 (652)
57 TIGR02521 type_IV_pilW type IV 99.3 9.3E-10 2E-14 97.0 21.3 193 204-398 33-231 (234)
58 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3E-16 78.4 6.7 50 231-280 1-50 (50)
59 KOG0547 Translocase of outer m 99.3 9.2E-09 2E-13 93.3 26.7 367 52-431 128-569 (606)
60 TIGR02521 type_IV_pilW type IV 99.3 1.6E-09 3.4E-14 95.5 21.6 196 233-462 31-232 (234)
61 KOG4318 Bicoid mRNA stability 99.3 1.2E-09 2.6E-14 105.6 21.7 269 91-385 11-286 (1088)
62 KOG1173 Anaphase-promoting com 99.3 1.1E-08 2.4E-13 94.4 26.6 60 33-94 45-106 (611)
63 KOG1156 N-terminal acetyltrans 99.2 5E-08 1.1E-12 91.6 30.9 344 52-402 54-470 (700)
64 PF12569 NARP1: NMDA receptor- 99.2 7.1E-08 1.5E-12 92.7 32.1 399 47-458 13-516 (517)
65 KOG1840 Kinesin light chain [C 99.2 3.5E-09 7.6E-14 100.4 22.3 236 203-460 200-477 (508)
66 KOG2047 mRNA splicing factor [ 99.2 4.8E-07 1E-11 85.1 34.2 399 52-460 115-613 (835)
67 KOG4162 Predicted calmodulin-b 99.2 1.9E-07 4.2E-12 89.6 31.7 122 337-463 652-784 (799)
68 PRK12370 invasion protein regu 99.2 4.5E-09 9.7E-14 104.3 22.1 238 217-464 276-537 (553)
69 KOG1173 Anaphase-promoting com 99.2 1.2E-08 2.6E-13 94.2 22.3 265 135-406 239-522 (611)
70 KOG1156 N-terminal acetyltrans 99.2 1E-06 2.2E-11 83.2 35.0 414 38-464 9-470 (700)
71 PRK11189 lipoprotein NlpI; Pro 99.2 7.8E-09 1.7E-13 93.9 20.5 210 248-464 41-267 (296)
72 PRK12370 invasion protein regu 99.2 1.8E-08 3.9E-13 100.1 24.8 203 156-365 320-536 (553)
73 KOG1840 Kinesin light chain [C 99.1 4.1E-08 9E-13 93.2 25.7 231 142-398 201-478 (508)
74 KOG1174 Anaphase-promoting com 99.1 7.8E-07 1.7E-11 79.4 30.3 257 199-463 229-501 (564)
75 KOG1174 Anaphase-promoting com 99.1 6.5E-07 1.4E-11 79.8 28.2 80 351-435 420-507 (564)
76 KOG1129 TPR repeat-containing 99.1 3.2E-09 7E-14 91.2 13.5 224 175-405 227-461 (478)
77 KOG3785 Uncharacterized conser 99.1 3.6E-07 7.7E-12 79.8 25.4 374 52-431 35-493 (557)
78 KOG0548 Molecular co-chaperone 99.1 1.6E-07 3.6E-12 86.5 24.5 96 52-150 15-114 (539)
79 KOG3785 Uncharacterized conser 99.1 1.2E-06 2.5E-11 76.7 28.3 372 77-459 29-454 (557)
80 PF12569 NARP1: NMDA receptor- 99.0 1.3E-07 2.8E-12 90.9 23.8 250 209-466 11-295 (517)
81 KOG0548 Molecular co-chaperone 99.0 8.5E-07 1.8E-11 81.9 27.5 101 342-446 365-473 (539)
82 KOG0624 dsRNA-activated protei 99.0 4.4E-07 9.5E-12 79.0 24.0 302 139-464 37-372 (504)
83 COG3063 PilF Tfp pilus assembl 99.0 1.2E-07 2.6E-12 78.0 19.3 193 205-399 38-236 (250)
84 COG3063 PilF Tfp pilus assembl 99.0 1.3E-07 2.8E-12 77.8 19.1 182 108-291 38-230 (250)
85 PF04733 Coatomer_E: Coatomer 99.0 2.6E-08 5.7E-13 89.1 16.7 243 181-461 11-264 (290)
86 KOG3616 Selective LIM binding 99.0 8.6E-07 1.9E-11 84.7 26.9 245 209-473 739-1035(1636)
87 PF04733 Coatomer_E: Coatomer 98.9 2.3E-07 5E-12 83.1 19.2 215 142-363 37-264 (290)
88 KOG1070 rRNA processing protei 98.9 1.6E-07 3.5E-12 95.5 19.7 198 265-466 1455-1667(1710)
89 KOG2376 Signal recognition par 98.9 1.4E-05 2.9E-10 75.0 30.5 199 16-229 26-251 (652)
90 PRK11189 lipoprotein NlpI; Pro 98.9 8.3E-07 1.8E-11 80.7 22.9 191 70-263 64-266 (296)
91 cd05804 StaR_like StaR_like; a 98.9 9.4E-06 2E-10 76.6 30.6 190 72-262 8-215 (355)
92 KOG4340 Uncharacterized conser 98.9 8.2E-06 1.8E-10 69.9 26.0 187 74-264 14-209 (459)
93 KOG3616 Selective LIM binding 98.9 4.8E-06 1E-10 79.8 27.2 254 145-425 620-908 (1636)
94 KOG3617 WD40 and TPR repeat-co 98.9 1.4E-05 3.1E-10 77.6 30.5 233 35-291 724-990 (1416)
95 cd05804 StaR_like StaR_like; a 98.9 4.2E-06 9.1E-11 79.0 27.1 262 181-463 53-337 (355)
96 KOG0624 dsRNA-activated protei 98.8 4.2E-06 9.2E-11 73.0 23.8 191 103-295 36-250 (504)
97 KOG4162 Predicted calmodulin-b 98.8 1.6E-05 3.4E-10 76.9 29.2 361 96-465 314-752 (799)
98 KOG1125 TPR repeat-containing 98.8 1.4E-07 3.1E-12 87.7 14.4 214 178-398 292-526 (579)
99 TIGR03302 OM_YfiO outer membra 98.8 3.8E-07 8.2E-12 80.4 16.2 183 267-463 32-233 (235)
100 PRK04841 transcriptional regul 98.8 3E-05 6.6E-10 82.9 33.4 319 80-398 384-759 (903)
101 KOG0985 Vesicle coat protein c 98.8 7.5E-05 1.6E-09 74.4 32.2 200 171-396 1104-1305(1666)
102 KOG3617 WD40 and TPR repeat-co 98.8 4.3E-06 9.3E-11 81.1 23.1 354 67-460 723-1107(1416)
103 PRK10370 formate-dependent nit 98.7 1.1E-06 2.4E-11 74.3 16.2 114 348-465 52-176 (198)
104 KOG3081 Vesicle coat complex C 98.7 1.3E-05 2.8E-10 67.7 20.4 207 184-398 21-235 (299)
105 KOG4340 Uncharacterized conser 98.7 3.1E-05 6.8E-10 66.4 22.9 311 40-361 13-372 (459)
106 KOG1070 rRNA processing protei 98.7 4.5E-06 9.8E-11 85.4 20.8 226 170-396 1457-1697(1710)
107 PRK15359 type III secretion sy 98.6 1E-06 2.2E-11 70.5 13.2 105 334-443 23-136 (144)
108 PRK04841 transcriptional regul 98.6 0.00061 1.3E-08 73.1 38.4 316 149-465 383-763 (903)
109 KOG0985 Vesicle coat protein c 98.6 0.00061 1.3E-08 68.3 33.5 365 34-446 949-1326(1666)
110 KOG1128 Uncharacterized conser 98.6 4.6E-06 1E-10 80.0 18.7 238 204-459 400-652 (777)
111 KOG1127 TPR repeat-containing 98.6 1.5E-05 3.3E-10 79.1 22.7 433 21-460 475-994 (1238)
112 PRK14720 transcript cleavage f 98.6 2.2E-05 4.7E-10 79.7 24.0 236 170-445 30-269 (906)
113 PRK15359 type III secretion sy 98.6 1.1E-06 2.4E-11 70.2 11.9 103 355-464 13-123 (144)
114 KOG1127 TPR repeat-containing 98.6 3.3E-05 7.2E-10 76.8 23.7 378 85-470 473-923 (1238)
115 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 3.8E-12 53.2 4.2 34 364-397 1-34 (34)
116 PF12854 PPR_1: PPR repeat 98.5 1.6E-07 3.5E-12 53.4 3.8 32 135-166 2-33 (34)
117 KOG1914 mRNA cleavage and poly 98.5 0.00086 1.9E-08 62.7 29.1 390 67-462 17-501 (656)
118 PRK15179 Vi polysaccharide bio 98.5 2E-05 4.3E-10 79.2 19.6 124 334-462 85-217 (694)
119 KOG1125 TPR repeat-containing 98.4 6.6E-06 1.4E-10 76.9 14.6 105 353-460 412-525 (579)
120 TIGR03302 OM_YfiO outer membra 98.4 2.3E-05 5E-10 69.0 17.2 183 201-399 32-232 (235)
121 KOG1128 Uncharacterized conser 98.4 3.1E-05 6.6E-10 74.6 18.5 211 142-363 400-615 (777)
122 COG4783 Putative Zn-dependent 98.4 0.00014 3E-09 67.1 21.6 194 52-263 250-455 (484)
123 PLN02789 farnesyltranstransfer 98.4 0.00018 3.8E-09 65.6 22.0 217 236-460 40-300 (320)
124 KOG3081 Vesicle coat complex C 98.3 0.00057 1.2E-08 58.1 22.1 81 317-398 186-270 (299)
125 COG5010 TadD Flp pilus assembl 98.3 6.7E-05 1.5E-09 63.5 16.7 148 310-458 72-227 (257)
126 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.7E-05 3.7E-10 73.6 14.1 121 310-460 175-295 (395)
127 KOG3060 Uncharacterized conser 98.3 0.00023 5.1E-09 59.9 19.1 185 247-437 26-229 (289)
128 PRK10370 formate-dependent nit 98.3 7.5E-05 1.6E-09 63.2 16.6 113 318-435 53-180 (198)
129 TIGR02552 LcrH_SycD type III s 98.3 1.3E-05 2.8E-10 63.7 10.8 90 374-463 21-115 (135)
130 COG4783 Putative Zn-dependent 98.3 6.8E-05 1.5E-09 69.1 16.4 111 345-460 316-435 (484)
131 KOG1914 mRNA cleavage and poly 98.3 0.0044 9.5E-08 58.2 33.1 416 34-459 17-536 (656)
132 PLN02789 farnesyltranstransfer 98.2 0.00023 5E-09 64.9 19.7 180 279-464 48-252 (320)
133 TIGR00756 PPR pentatricopeptid 98.2 2.1E-06 4.5E-11 49.7 4.0 34 71-104 1-34 (35)
134 COG5010 TadD Flp pilus assembl 98.2 0.00011 2.4E-09 62.2 15.3 147 144-291 70-225 (257)
135 PF13812 PPR_3: Pentatricopept 98.2 2.8E-06 6.1E-11 48.7 4.1 33 71-103 2-34 (34)
136 PRK14720 transcript cleavage f 98.1 0.00066 1.4E-08 69.3 21.9 234 67-346 28-268 (906)
137 TIGR00756 PPR pentatricopeptid 98.1 7.1E-06 1.5E-10 47.4 4.5 33 337-369 2-34 (35)
138 PRK15363 pathogenicity island 98.1 6.3E-05 1.4E-09 59.3 10.9 82 379-463 44-133 (157)
139 PF13812 PPR_3: Pentatricopept 98.1 8.3E-06 1.8E-10 46.7 4.3 33 234-266 2-34 (34)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9E-05 1.9E-09 68.9 13.2 122 72-198 171-295 (395)
141 PRK15179 Vi polysaccharide bio 98.0 0.00042 9.1E-09 69.9 17.7 171 169-348 84-268 (694)
142 KOG0553 TPR repeat-containing 98.0 6.3E-05 1.4E-09 65.0 10.0 91 314-409 91-185 (304)
143 KOG2041 WD40 repeat protein [G 98.0 0.012 2.7E-07 57.0 25.3 235 102-363 689-951 (1189)
144 PF09976 TPR_21: Tetratricopep 97.9 0.00056 1.2E-08 54.9 14.4 122 236-360 15-143 (145)
145 PF09976 TPR_21: Tetratricopep 97.9 0.00032 6.9E-09 56.3 12.9 123 306-459 14-144 (145)
146 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00018 4E-09 55.4 11.1 97 336-463 3-106 (119)
147 TIGR02552 LcrH_SycD type III s 97.9 0.00028 6.1E-09 55.9 12.3 90 308-398 21-113 (135)
148 PF13432 TPR_16: Tetratricopep 97.9 2.2E-05 4.7E-10 53.0 4.8 56 408-463 6-61 (65)
149 PF08579 RPM2: Mitochondrial r 97.9 0.00021 4.5E-09 52.2 9.6 80 73-152 28-116 (120)
150 PF14938 SNAP: Soluble NSF att 97.9 0.0011 2.3E-08 60.0 16.8 26 373-398 158-183 (282)
151 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00042 9.2E-09 53.4 12.3 92 305-398 3-104 (119)
152 KOG2041 WD40 repeat protein [G 97.9 0.018 4E-07 55.8 24.8 322 55-398 679-1085(1189)
153 KOG2053 Mitochondrial inherita 97.9 0.041 8.9E-07 55.2 33.1 208 52-263 22-256 (932)
154 PF01535 PPR: PPR repeat; Int 97.8 2.4E-05 5.1E-10 43.7 3.5 31 71-101 1-31 (31)
155 PRK02603 photosystem I assembl 97.8 0.00054 1.2E-08 56.8 13.1 123 306-448 37-166 (172)
156 PF14938 SNAP: Soluble NSF att 97.8 0.0085 1.8E-07 54.2 21.8 108 235-342 157-275 (282)
157 KOG0553 TPR repeat-containing 97.8 6.3E-05 1.4E-09 65.0 7.4 104 342-450 88-200 (304)
158 KOG3060 Uncharacterized conser 97.8 0.0028 6E-08 53.6 16.4 182 282-464 26-222 (289)
159 COG4235 Cytochrome c biogenesi 97.8 0.00029 6.3E-09 61.4 10.6 105 369-473 155-267 (287)
160 cd00189 TPR Tetratricopeptide 97.8 0.00027 5.8E-09 51.7 9.3 96 337-463 2-98 (100)
161 PF12895 Apc3: Anaphase-promot 97.8 5E-05 1.1E-09 54.4 4.9 81 348-458 2-83 (84)
162 PF14559 TPR_19: Tetratricopep 97.7 3.4E-05 7.4E-10 52.6 3.4 54 411-464 3-56 (68)
163 PF01535 PPR: PPR repeat; Int 97.7 5.2E-05 1.1E-09 42.2 3.6 31 234-264 1-31 (31)
164 PLN03088 SGT1, suppressor of 97.7 0.00027 5.8E-09 66.0 10.2 99 341-444 8-115 (356)
165 PLN03088 SGT1, suppressor of 97.7 0.00077 1.7E-08 63.0 13.0 91 310-405 8-102 (356)
166 PF04840 Vps16_C: Vps16, C-ter 97.7 0.042 9.2E-07 50.1 26.6 109 306-424 179-287 (319)
167 CHL00033 ycf3 photosystem I as 97.7 0.0016 3.5E-08 53.7 13.4 105 304-432 35-153 (168)
168 PF10037 MRP-S27: Mitochondria 97.7 0.00049 1.1E-08 64.4 11.1 120 32-153 61-186 (429)
169 KOG2796 Uncharacterized conser 97.6 0.0019 4.1E-08 54.8 13.1 131 336-466 178-319 (366)
170 PRK15363 pathogenicity island 97.6 0.0023 5E-08 50.6 12.8 96 308-404 39-137 (157)
171 PF13371 TPR_9: Tetratricopept 97.6 0.0002 4.4E-09 49.6 6.0 58 408-465 4-61 (73)
172 PF13414 TPR_11: TPR repeat; P 97.6 7.6E-05 1.6E-09 51.1 3.8 54 409-462 13-67 (69)
173 PF13431 TPR_17: Tetratricopep 97.6 6E-05 1.3E-09 42.8 2.3 33 422-454 2-34 (34)
174 PF12895 Apc3: Anaphase-promot 97.5 0.00035 7.5E-09 50.0 6.3 18 342-359 65-82 (84)
175 KOG0550 Molecular chaperone (D 97.5 0.0017 3.7E-08 58.8 11.6 157 268-431 168-353 (486)
176 PF06239 ECSIT: Evolutionarily 97.5 0.00094 2E-08 55.4 9.2 97 59-155 34-153 (228)
177 PRK10153 DNA-binding transcrip 97.5 0.0044 9.6E-08 60.6 15.4 129 333-465 335-485 (517)
178 cd00189 TPR Tetratricopeptide 97.5 0.0011 2.3E-08 48.4 8.7 92 73-166 3-94 (100)
179 KOG2280 Vacuolar assembly/sort 97.4 0.15 3.2E-06 50.3 24.6 100 98-198 425-534 (829)
180 PRK10866 outer membrane biogen 97.4 0.013 2.9E-07 51.4 16.3 55 406-460 182-239 (243)
181 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.1 2.2E-06 48.3 26.4 121 336-460 398-529 (660)
182 PF12688 TPR_5: Tetratrico pep 97.4 0.0045 9.7E-08 47.2 11.6 108 238-345 6-116 (120)
183 PF12688 TPR_5: Tetratrico pep 97.4 0.0018 3.9E-08 49.3 9.5 95 340-460 6-102 (120)
184 COG4700 Uncharacterized protei 97.4 0.029 6.3E-07 45.3 16.2 131 265-398 86-221 (251)
185 KOG1538 Uncharacterized conser 97.4 0.022 4.9E-07 54.8 17.9 205 47-291 565-796 (1081)
186 PF10037 MRP-S27: Mitochondria 97.4 0.0055 1.2E-07 57.6 13.9 121 263-383 61-186 (429)
187 COG4700 Uncharacterized protei 97.3 0.034 7.4E-07 44.9 15.8 126 333-459 87-219 (251)
188 PRK02603 photosystem I assembl 97.3 0.0039 8.5E-08 51.7 11.4 89 70-159 35-125 (172)
189 CHL00033 ycf3 photosystem I as 97.3 0.0026 5.6E-08 52.6 10.0 96 335-459 35-139 (168)
190 PF13414 TPR_11: TPR repeat; P 97.3 0.0013 2.7E-08 44.9 6.8 63 334-398 2-66 (69)
191 PF05843 Suf: Suppressor of fo 97.3 0.0023 4.9E-08 57.6 10.2 128 305-433 2-141 (280)
192 PF04840 Vps16_C: Vps16, C-ter 97.3 0.15 3.2E-06 46.7 23.2 106 173-290 179-284 (319)
193 PF05843 Suf: Suppressor of fo 97.2 0.0098 2.1E-07 53.6 13.8 139 234-377 2-147 (280)
194 KOG0550 Molecular chaperone (D 97.2 0.15 3.3E-06 46.7 20.6 154 210-365 177-351 (486)
195 PRK10866 outer membrane biogen 97.2 0.031 6.8E-07 49.0 16.3 59 340-398 180-240 (243)
196 COG3898 Uncharacterized membra 97.2 0.16 3.4E-06 46.2 26.9 275 118-405 97-397 (531)
197 PRK10803 tol-pal system protei 97.2 0.0059 1.3E-07 54.0 11.6 60 337-398 145-208 (263)
198 KOG2053 Mitochondrial inherita 97.2 0.32 6.9E-06 49.2 37.6 207 16-229 23-253 (932)
199 PRK10803 tol-pal system protei 97.1 0.0079 1.7E-07 53.2 11.4 95 370-464 143-248 (263)
200 PF13432 TPR_16: Tetratricopep 97.1 0.0035 7.6E-08 42.1 7.1 56 341-398 3-59 (65)
201 PRK10153 DNA-binding transcrip 97.1 0.052 1.1E-06 53.3 17.8 71 334-409 419-489 (517)
202 KOG2796 Uncharacterized conser 97.1 0.1 2.3E-06 44.7 16.9 169 205-376 139-325 (366)
203 KOG1130 Predicted G-alpha GTPa 97.0 0.0049 1.1E-07 55.9 9.0 127 271-397 198-342 (639)
204 PF08579 RPM2: Mitochondrial r 97.0 0.014 3.1E-07 42.9 9.6 81 235-316 27-116 (120)
205 PF07079 DUF1347: Protein of u 97.0 0.32 7E-06 45.3 31.5 431 11-460 15-522 (549)
206 PRK15331 chaperone protein Sic 96.9 0.025 5.4E-07 45.1 11.7 82 380-461 47-133 (165)
207 PF06239 ECSIT: Evolutionarily 96.9 0.011 2.3E-07 49.3 9.8 95 222-317 34-151 (228)
208 KOG0543 FKBP-type peptidyl-pro 96.9 0.011 2.5E-07 53.8 10.5 89 371-462 258-355 (397)
209 COG3898 Uncharacterized membra 96.9 0.34 7.3E-06 44.2 19.8 189 234-430 83-294 (531)
210 PF13525 YfiO: Outer membrane 96.9 0.045 9.8E-07 46.7 13.8 48 415-462 106-170 (203)
211 PF13512 TPR_18: Tetratricopep 96.8 0.029 6.4E-07 43.6 10.8 82 381-462 21-128 (142)
212 PF03704 BTAD: Bacterial trans 96.8 0.021 4.5E-07 45.8 10.6 112 345-469 16-137 (146)
213 PF13525 YfiO: Outer membrane 96.7 0.064 1.4E-06 45.8 13.8 48 406-453 148-198 (203)
214 PF14559 TPR_19: Tetratricopep 96.7 0.0063 1.4E-07 41.2 6.2 50 118-168 4-53 (68)
215 PF13424 TPR_12: Tetratricopep 96.7 0.0035 7.6E-08 43.9 4.7 70 370-461 5-74 (78)
216 PF13371 TPR_9: Tetratricopept 96.6 0.008 1.7E-07 41.4 6.2 54 343-398 3-57 (73)
217 KOG1258 mRNA processing protei 96.5 0.9 2E-05 44.1 27.7 395 36-448 44-490 (577)
218 KOG2280 Vacuolar assembly/sort 96.5 1 2.3E-05 44.8 31.4 310 133-458 425-795 (829)
219 PF12921 ATP13: Mitochondrial 96.4 0.043 9.4E-07 42.3 9.5 81 235-315 4-99 (126)
220 KOG1538 Uncharacterized conser 96.3 0.38 8.2E-06 46.8 16.9 247 202-464 556-848 (1081)
221 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.01 2.2E-07 55.4 6.5 29 370-398 75-103 (453)
222 KOG2610 Uncharacterized conser 96.3 0.041 8.9E-07 48.8 9.6 150 316-469 115-283 (491)
223 PF13428 TPR_14: Tetratricopep 96.3 0.0045 9.7E-08 37.6 2.8 33 409-441 11-43 (44)
224 PF03704 BTAD: Bacterial trans 96.3 0.029 6.2E-07 45.0 8.4 70 337-407 64-137 (146)
225 PF13281 DUF4071: Domain of un 96.1 0.48 1E-05 43.9 16.3 72 207-278 146-227 (374)
226 COG4235 Cytochrome c biogenesi 96.1 0.17 3.7E-06 44.6 12.4 95 267-363 155-255 (287)
227 PF13424 TPR_12: Tetratricopep 96.0 0.026 5.7E-07 39.4 6.0 63 336-398 6-74 (78)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.4 3E-05 41.2 27.0 87 371-458 398-491 (660)
229 PF13281 DUF4071: Domain of un 96.0 0.25 5.4E-06 45.7 13.5 172 75-262 146-334 (374)
230 COG4105 ComL DNA uptake lipopr 95.9 1 2.2E-05 39.0 16.3 57 407-464 175-234 (254)
231 KOG4555 TPR repeat-containing 95.9 0.092 2E-06 39.7 8.6 86 343-430 51-146 (175)
232 COG4105 ComL DNA uptake lipopr 95.9 0.65 1.4E-05 40.1 14.8 116 347-462 46-196 (254)
233 KOG1130 Predicted G-alpha GTPa 95.9 0.013 2.8E-07 53.3 4.7 47 80-127 27-77 (639)
234 KOG2114 Vacuolar assembly/sort 95.9 2.4 5.3E-05 42.9 27.4 171 47-230 343-518 (933)
235 KOG4234 TPR repeat-containing 95.8 0.13 2.8E-06 42.2 9.8 117 342-463 102-234 (271)
236 PF13512 TPR_18: Tetratricopep 95.8 0.47 1E-05 37.1 12.6 113 311-435 17-135 (142)
237 PF04184 ST7: ST7 protein; In 95.8 1.2 2.5E-05 42.4 17.0 71 308-378 263-339 (539)
238 KOG3941 Intermediate in Toll s 95.7 0.11 2.3E-06 45.1 9.3 102 54-155 49-173 (406)
239 PRK11906 transcriptional regul 95.6 0.58 1.3E-05 44.2 14.3 134 320-458 274-432 (458)
240 PRK11906 transcriptional regul 95.5 0.26 5.7E-06 46.4 12.0 126 336-464 252-403 (458)
241 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.4 8.7E-06 45.2 13.1 62 303-364 74-141 (453)
242 COG0457 NrfG FOG: TPR repeat [ 95.5 1.5 3.3E-05 37.8 21.9 188 270-462 61-265 (291)
243 smart00299 CLH Clathrin heavy 95.4 1 2.2E-05 35.7 14.6 43 74-117 11-53 (140)
244 PF02259 FAT: FAT domain; Int 95.4 2.4 5.1E-05 39.8 19.8 35 412-446 271-305 (352)
245 PF10300 DUF3808: Protein of u 95.4 0.35 7.6E-06 47.2 13.2 110 350-461 248-375 (468)
246 PF04053 Coatomer_WDAD: Coatom 95.4 1.6 3.5E-05 42.1 17.3 128 143-291 298-425 (443)
247 COG3118 Thioredoxin domain-con 95.4 1.2 2.5E-05 39.5 14.6 47 183-229 146-195 (304)
248 PRK15331 chaperone protein Sic 95.3 0.13 2.8E-06 41.2 8.0 84 314-398 47-133 (165)
249 PF12921 ATP13: Mitochondrial 95.3 0.25 5.5E-06 38.1 9.5 82 70-151 2-99 (126)
250 KOG4555 TPR repeat-containing 95.3 0.23 4.9E-06 37.7 8.6 86 313-398 52-143 (175)
251 KOG0543 FKBP-type peptidyl-pro 95.2 0.14 3.1E-06 46.9 9.0 108 341-464 214-322 (397)
252 PF04053 Coatomer_WDAD: Coatom 95.1 1.9 4.1E-05 41.6 16.6 157 149-331 270-429 (443)
253 PF07035 Mic1: Colon cancer-as 95.0 1.3 2.9E-05 35.9 13.0 54 207-260 94-147 (167)
254 PF07035 Mic1: Colon cancer-as 94.9 1.7 3.6E-05 35.3 13.4 31 91-121 15-45 (167)
255 PF09205 DUF1955: Domain of un 94.9 0.9 2E-05 34.7 10.9 137 316-465 14-152 (161)
256 PF13176 TPR_7: Tetratricopept 94.8 0.056 1.2E-06 31.0 3.6 26 435-460 1-26 (36)
257 smart00299 CLH Clathrin heavy 94.8 1.6 3.4E-05 34.5 13.6 127 108-245 10-137 (140)
258 COG1729 Uncharacterized protei 94.8 0.7 1.5E-05 40.3 11.7 99 337-462 144-244 (262)
259 COG1729 Uncharacterized protei 94.7 0.34 7.3E-06 42.2 9.4 95 306-401 144-246 (262)
260 PF00637 Clathrin: Region in C 94.5 0.14 2.9E-06 40.9 6.6 128 111-248 13-140 (143)
261 KOG1920 IkappaB kinase complex 94.4 6.8 0.00015 41.6 19.2 23 436-458 1187-1209(1265)
262 COG3629 DnrI DNA-binding trans 94.4 0.41 8.9E-06 42.4 9.5 61 409-469 163-228 (280)
263 PF13428 TPR_14: Tetratricopep 94.3 0.08 1.7E-06 32.0 3.7 32 433-464 1-32 (44)
264 KOG4234 TPR repeat-containing 94.3 0.27 5.9E-06 40.4 7.5 88 378-465 103-200 (271)
265 COG3118 Thioredoxin domain-con 94.2 2 4.3E-05 38.0 13.0 159 22-185 120-286 (304)
266 COG2976 Uncharacterized protei 94.1 0.95 2.1E-05 37.3 10.3 85 341-429 95-189 (207)
267 KOG1920 IkappaB kinase complex 94.1 9.7 0.00021 40.6 22.2 105 210-331 947-1053(1265)
268 PF04097 Nic96: Nup93/Nic96; 94.0 8.1 0.00018 39.4 20.1 46 71-118 113-158 (613)
269 PF10300 DUF3808: Protein of u 93.9 6.8 0.00015 38.4 22.8 165 125-294 177-373 (468)
270 COG4785 NlpI Lipoprotein NlpI, 93.8 0.25 5.4E-06 41.2 6.6 74 408-486 74-147 (297)
271 PF09205 DUF1955: Domain of un 93.8 2.4 5.2E-05 32.5 15.0 136 244-402 13-151 (161)
272 KOG4648 Uncharacterized conser 93.7 0.21 4.5E-06 44.6 6.4 24 411-434 177-200 (536)
273 PRK09687 putative lyase; Provi 93.7 5.2 0.00011 36.1 25.5 56 229-291 202-257 (280)
274 KOG2610 Uncharacterized conser 93.6 1.3 2.7E-05 39.8 10.9 141 117-258 115-272 (491)
275 PRK15180 Vi polysaccharide bio 93.2 7.8 0.00017 36.8 20.9 118 15-137 302-423 (831)
276 KOG3941 Intermediate in Toll s 93.2 1 2.2E-05 39.3 9.5 108 222-330 54-185 (406)
277 KOG2114 Vacuolar assembly/sort 93.1 4.4 9.6E-05 41.2 14.8 174 176-360 339-515 (933)
278 PF07079 DUF1347: Protein of u 92.9 8.7 0.00019 36.3 27.9 95 19-117 62-179 (549)
279 KOG1586 Protein required for f 92.7 5.9 0.00013 33.9 15.4 61 372-433 156-229 (288)
280 PF13176 TPR_7: Tetratricopept 92.6 0.32 6.9E-06 27.8 4.1 25 338-362 2-26 (36)
281 KOG2066 Vacuolar assembly/sort 92.6 13 0.00028 37.7 23.1 99 147-245 363-467 (846)
282 PF08631 SPO22: Meiosis protei 92.4 8 0.00017 34.9 18.6 20 343-362 254-273 (278)
283 KOG0890 Protein kinase of the 92.2 27 0.00059 40.5 27.4 278 176-464 1388-1733(2382)
284 KOG1941 Acetylcholine receptor 92.2 2.1 4.6E-05 38.9 10.4 23 436-458 249-271 (518)
285 PF00515 TPR_1: Tetratricopept 92.1 0.38 8.2E-06 26.9 4.0 27 337-363 3-29 (34)
286 PF07719 TPR_2: Tetratricopept 91.9 0.24 5.1E-06 27.7 3.0 29 434-462 2-30 (34)
287 KOG1550 Extracellular protein 91.7 3.7 8.1E-05 41.2 13.0 50 414-465 379-429 (552)
288 COG0457 NrfG FOG: TPR repeat [ 91.6 7.9 0.00017 33.1 20.7 190 205-398 62-264 (291)
289 KOG1258 mRNA processing protei 91.5 15 0.00032 36.1 26.0 180 201-384 296-489 (577)
290 KOG1585 Protein required for f 91.2 9.1 0.0002 33.0 14.0 48 205-253 193-247 (308)
291 PF00515 TPR_1: Tetratricopept 91.1 0.32 6.9E-06 27.2 3.0 30 434-463 2-31 (34)
292 KOG1585 Protein required for f 91.1 9.4 0.0002 32.9 14.5 86 308-394 154-251 (308)
293 COG1747 Uncharacterized N-term 90.9 16 0.00035 35.2 17.0 157 300-461 62-233 (711)
294 COG4649 Uncharacterized protei 90.9 7.6 0.00017 31.5 11.3 115 182-296 69-195 (221)
295 TIGR02561 HrpB1_HrpK type III 90.9 0.73 1.6E-05 36.1 5.5 66 381-449 21-94 (153)
296 KOG1941 Acetylcholine receptor 90.8 3.1 6.7E-05 37.9 9.9 123 274-396 128-272 (518)
297 PF07721 TPR_4: Tetratricopept 90.6 0.36 7.8E-06 25.1 2.6 25 434-458 2-26 (26)
298 PF04184 ST7: ST7 protein; In 90.4 17 0.00038 35.0 15.3 77 268-344 259-340 (539)
299 PF07719 TPR_2: Tetratricopept 90.4 0.7 1.5E-05 25.6 4.0 27 337-363 3-29 (34)
300 PF13374 TPR_10: Tetratricopep 90.3 0.52 1.1E-05 27.7 3.6 28 434-461 3-30 (42)
301 COG3629 DnrI DNA-binding trans 90.3 2.8 6E-05 37.3 9.3 77 72-149 155-236 (280)
302 PF10602 RPN7: 26S proteasome 90.2 3.2 7E-05 34.4 9.3 56 307-362 39-100 (177)
303 KOG1464 COP9 signalosome, subu 90.0 6.5 0.00014 34.3 10.9 161 237-398 69-259 (440)
304 KOG4570 Uncharacterized conser 89.9 1.4 3.1E-05 39.1 7.1 102 31-135 58-165 (418)
305 PF09613 HrpB1_HrpK: Bacterial 89.9 1.1 2.4E-05 35.8 5.9 77 370-449 7-94 (160)
306 PF13170 DUF4003: Protein of u 89.8 5.4 0.00012 36.2 11.1 141 5-148 60-225 (297)
307 PF10602 RPN7: 26S proteasome 89.7 3.3 7.1E-05 34.3 8.9 64 71-134 37-102 (177)
308 TIGR02561 HrpB1_HrpK type III 89.5 9 0.00019 30.3 11.8 99 346-460 21-120 (153)
309 KOG4642 Chaperone-dependent E3 89.0 1.5 3.3E-05 37.4 6.3 49 411-459 56-104 (284)
310 PF00637 Clathrin: Region in C 88.9 0.68 1.5E-05 36.8 4.3 82 76-164 13-94 (143)
311 PF13181 TPR_8: Tetratricopept 88.8 0.94 2E-05 25.1 3.7 28 434-461 2-29 (34)
312 PF13431 TPR_17: Tetratricopep 88.4 0.83 1.8E-05 25.7 3.2 31 129-160 3-33 (34)
313 PRK09687 putative lyase; Provi 88.4 19 0.00041 32.5 24.9 138 230-380 139-277 (280)
314 COG4649 Uncharacterized protei 88.3 13 0.00027 30.3 12.0 28 434-461 168-195 (221)
315 PF09613 HrpB1_HrpK: Bacterial 88.0 5.9 0.00013 31.8 8.8 107 341-463 16-123 (160)
316 PF13170 DUF4003: Protein of u 87.9 12 0.00025 34.1 11.8 128 249-378 78-225 (297)
317 PF08631 SPO22: Meiosis protei 87.8 21 0.00045 32.2 21.5 99 270-370 86-192 (278)
318 PF13174 TPR_6: Tetratricopept 87.7 0.67 1.4E-05 25.5 2.6 29 435-463 2-30 (33)
319 COG2909 MalT ATP-dependent tra 87.7 38 0.00082 35.3 17.9 189 278-467 425-652 (894)
320 COG3947 Response regulator con 87.3 19 0.00041 32.0 12.0 55 407-461 287-341 (361)
321 KOG0276 Vesicle coat complex C 87.2 18 0.0004 35.6 12.9 151 151-330 597-747 (794)
322 TIGR02508 type_III_yscG type I 87.0 9.6 0.00021 27.7 8.4 86 19-110 22-107 (115)
323 TIGR02508 type_III_yscG type I 86.0 11 0.00024 27.4 9.7 58 211-271 48-105 (115)
324 PF14561 TPR_20: Tetratricopep 85.8 2.2 4.7E-05 30.7 4.9 46 419-464 8-53 (90)
325 COG2976 Uncharacterized protei 85.8 19 0.00042 30.0 14.2 90 276-365 97-189 (207)
326 PF13374 TPR_10: Tetratricopep 85.7 2.1 4.6E-05 25.0 4.3 28 336-363 3-30 (42)
327 PF13181 TPR_8: Tetratricopept 85.5 1.5 3.2E-05 24.3 3.3 27 337-363 3-29 (34)
328 smart00386 HAT HAT (Half-A-TPR 85.2 1.7 3.7E-05 23.6 3.4 31 413-443 1-31 (33)
329 PF06552 TOM20_plant: Plant sp 85.1 4.9 0.00011 32.9 7.0 32 416-447 52-83 (186)
330 PRK11619 lytic murein transgly 85.0 50 0.0011 34.0 32.1 307 36-362 33-373 (644)
331 PF02284 COX5A: Cytochrome c o 85.0 6.1 0.00013 28.8 6.6 49 353-401 28-76 (108)
332 KOG1308 Hsp70-interacting prot 84.6 0.82 1.8E-05 41.1 2.7 82 382-466 126-215 (377)
333 KOG4570 Uncharacterized conser 84.6 4.6 0.0001 36.1 7.1 45 319-363 115-163 (418)
334 PF13929 mRNA_stabil: mRNA sta 84.5 15 0.00032 32.8 10.2 143 19-166 113-264 (292)
335 COG4785 NlpI Lipoprotein NlpI, 84.4 24 0.00053 30.0 13.7 29 234-262 238-266 (297)
336 KOG4648 Uncharacterized conser 84.3 2.1 4.5E-05 38.6 5.0 55 342-398 104-159 (536)
337 TIGR03504 FimV_Cterm FimV C-te 84.3 1.7 3.6E-05 26.2 3.1 28 437-464 3-30 (44)
338 cd00923 Cyt_c_Oxidase_Va Cytoc 84.1 7.6 0.00017 28.0 6.7 47 86-132 23-69 (103)
339 PF11207 DUF2989: Protein of u 83.6 18 0.00039 30.4 9.8 80 243-324 117-198 (203)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 83.6 6.7 0.00015 28.2 6.3 50 350-399 22-71 (103)
341 KOG1586 Protein required for f 83.1 20 0.00044 30.8 10.0 24 411-434 166-189 (288)
342 KOG2066 Vacuolar assembly/sort 83.0 59 0.0013 33.4 26.1 149 77-232 363-535 (846)
343 PF04190 DUF410: Protein of un 83.0 34 0.00073 30.5 12.4 128 52-190 3-140 (260)
344 PF02259 FAT: FAT domain; Int 83.0 41 0.00088 31.4 20.9 66 333-398 144-212 (352)
345 PF14853 Fis1_TPR_C: Fis1 C-te 82.8 4.2 9E-05 25.7 4.6 24 411-434 13-36 (53)
346 PRK11619 lytic murein transgly 82.4 63 0.0014 33.2 33.2 97 21-121 82-179 (644)
347 PF02284 COX5A: Cytochrome c o 82.3 11 0.00023 27.6 7.0 60 251-312 28-87 (108)
348 PF11207 DUF2989: Protein of u 82.2 13 0.00028 31.2 8.5 67 123-190 124-197 (203)
349 COG5191 Uncharacterized conser 82.2 8.5 0.00018 34.4 7.8 76 367-442 104-185 (435)
350 KOG0376 Serine-threonine phosp 82.0 2.3 5E-05 40.3 4.6 93 342-439 11-112 (476)
351 PF13929 mRNA_stabil: mRNA sta 80.6 42 0.00092 30.0 12.8 58 301-358 199-261 (292)
352 PF13762 MNE1: Mitochondrial s 80.4 27 0.00059 27.6 9.8 90 27-118 27-128 (145)
353 smart00028 TPR Tetratricopepti 80.0 3.2 6.9E-05 21.8 3.3 29 434-462 2-30 (34)
354 PRK10941 hypothetical protein; 79.0 9 0.00019 34.2 7.2 58 375-435 186-251 (269)
355 KOG0376 Serine-threonine phosp 78.2 7.1 0.00015 37.2 6.5 92 311-407 11-106 (476)
356 PF13174 TPR_6: Tetratricopept 78.1 4.4 9.6E-05 22.0 3.4 23 376-398 6-28 (33)
357 COG5159 RPN6 26S proteasome re 76.2 46 0.001 29.6 10.2 121 239-359 9-149 (421)
358 KOG2396 HAT (Half-A-TPR) repea 75.8 81 0.0018 30.7 28.1 92 367-461 456-558 (568)
359 KOG0276 Vesicle coat complex C 75.4 57 0.0012 32.5 11.6 44 316-361 649-692 (794)
360 KOG2471 TPR repeat-containing 75.2 74 0.0016 30.8 12.0 108 314-447 250-383 (696)
361 TIGR03504 FimV_Cterm FimV C-te 74.6 8 0.00017 23.3 3.9 25 239-263 5-29 (44)
362 PF10579 Rapsyn_N: Rapsyn N-te 74.5 13 0.00027 25.8 5.2 47 347-393 18-66 (80)
363 PRK13800 putative oxidoreducta 74.0 1.4E+02 0.003 32.5 23.9 253 66-337 631-886 (897)
364 KOG2396 HAT (Half-A-TPR) repea 73.1 95 0.0021 30.2 26.6 106 321-427 445-558 (568)
365 KOG0686 COP9 signalosome, subu 72.3 71 0.0015 30.1 10.9 89 307-397 153-256 (466)
366 PRK10941 hypothetical protein; 72.3 13 0.00029 33.1 6.5 57 408-464 190-246 (269)
367 PF07163 Pex26: Pex26 protein; 72.2 51 0.0011 29.3 9.6 87 240-327 90-181 (309)
368 COG4455 ImpE Protein of avirul 72.0 29 0.00062 29.6 7.7 60 73-133 4-63 (273)
369 PF10366 Vps39_1: Vacuolar sor 70.4 31 0.00067 25.8 7.1 28 336-363 40-67 (108)
370 KOG4507 Uncharacterized conser 70.2 37 0.00081 33.5 9.1 123 320-444 589-721 (886)
371 PF13762 MNE1: Mitochondrial s 70.2 53 0.0011 26.1 9.5 79 306-384 41-129 (145)
372 PF06552 TOM20_plant: Plant sp 70.1 61 0.0013 26.8 13.4 84 351-465 51-139 (186)
373 PF00244 14-3-3: 14-3-3 protei 69.9 61 0.0013 28.4 9.9 56 238-293 6-62 (236)
374 PF07163 Pex26: Pex26 protein; 68.4 70 0.0015 28.5 9.6 57 342-398 90-146 (309)
375 PRK15180 Vi polysaccharide bio 68.3 40 0.00086 32.4 8.7 131 342-476 296-432 (831)
376 COG2909 MalT ATP-dependent tra 67.9 1.7E+02 0.0036 30.9 24.2 23 376-398 624-646 (894)
377 PF10579 Rapsyn_N: Rapsyn N-te 67.7 9.6 0.00021 26.3 3.5 44 412-455 19-65 (80)
378 KOG0551 Hsp90 co-chaperone CNS 67.0 19 0.0004 32.8 6.1 58 341-398 87-147 (390)
379 PF04762 IKI3: IKI3 family; I 66.3 1.9E+02 0.0041 31.5 14.5 26 308-333 816-843 (928)
380 PF12862 Apc5: Anaphase-promot 66.2 17 0.00037 26.3 5.0 27 435-461 43-69 (94)
381 PF14853 Fis1_TPR_C: Fis1 C-te 65.8 27 0.00058 22.1 5.1 36 340-377 6-41 (53)
382 PF13934 ELYS: Nuclear pore co 64.9 94 0.002 27.0 11.4 44 52-96 91-134 (226)
383 PF09477 Type_III_YscG: Bacter 64.8 55 0.0012 24.3 7.4 77 19-100 23-99 (116)
384 KOG3807 Predicted membrane pro 64.7 62 0.0014 29.5 8.8 105 216-327 230-334 (556)
385 PF11848 DUF3368: Domain of un 64.6 26 0.00056 21.6 4.8 33 81-113 13-45 (48)
386 PF14689 SPOB_a: Sensor_kinase 64.4 17 0.00038 23.8 4.3 46 351-398 6-51 (62)
387 KOG4077 Cytochrome c oxidase, 64.3 42 0.00091 25.7 6.5 46 88-133 67-112 (149)
388 KOG3824 Huntingtin interacting 64.1 12 0.00025 33.5 4.3 52 381-435 127-186 (472)
389 PF09986 DUF2225: Uncharacteri 63.9 94 0.002 26.7 9.8 95 348-464 90-196 (214)
390 cd08819 CARD_MDA5_2 Caspase ac 63.8 40 0.00086 23.9 6.0 66 21-90 21-86 (88)
391 KOG0890 Protein kinase of the 63.7 3.2E+02 0.0069 32.7 26.6 60 336-398 1671-1730(2382)
392 PF04190 DUF410: Protein of un 63.5 1.1E+02 0.0024 27.3 16.3 81 302-398 88-169 (260)
393 PF10345 Cohesin_load: Cohesin 63.3 1.8E+02 0.004 29.8 31.5 177 20-198 39-252 (608)
394 PF11663 Toxin_YhaV: Toxin wit 61.6 10 0.00022 29.3 3.1 32 82-115 107-138 (140)
395 COG0790 FOG: TPR repeat, SEL1 61.5 1.3E+02 0.0027 27.3 15.7 142 319-465 92-269 (292)
396 COG0735 Fur Fe2+/Zn2+ uptake r 61.5 59 0.0013 25.9 7.6 65 91-156 7-71 (145)
397 PF04097 Nic96: Nup93/Nic96; 61.4 2E+02 0.0043 29.6 20.4 350 37-404 112-535 (613)
398 KOG4077 Cytochrome c oxidase, 61.3 38 0.00082 26.0 5.8 46 354-399 68-113 (149)
399 COG5159 RPN6 26S proteasome re 61.3 1.2E+02 0.0027 27.1 11.6 23 437-459 129-151 (421)
400 KOG1550 Extracellular protein 60.4 2E+02 0.0043 29.2 18.0 171 218-397 228-424 (552)
401 PF11848 DUF3368: Domain of un 59.5 39 0.00084 20.8 5.1 34 243-276 12-45 (48)
402 KOG2063 Vacuolar assembly/sort 59.0 2.5E+02 0.0055 30.0 15.7 47 52-98 320-374 (877)
403 KOG0292 Vesicle coat complex C 58.8 1.3E+02 0.0027 31.7 10.7 181 245-465 605-785 (1202)
404 KOG2471 TPR repeat-containing 58.6 1.9E+02 0.004 28.3 11.2 37 83-119 30-66 (696)
405 PRK14956 DNA polymerase III su 58.5 1.4E+02 0.0031 29.3 10.9 110 9-142 166-285 (484)
406 PRK10564 maltose regulon perip 58.3 22 0.00048 31.9 5.0 42 336-377 258-299 (303)
407 PF04781 DUF627: Protein of un 57.9 61 0.0013 24.3 6.4 101 342-458 3-103 (111)
408 TIGR02270 conserved hypothetic 57.8 1.8E+02 0.004 28.0 23.7 236 77-332 45-280 (410)
409 PF10255 Paf67: RNA polymerase 57.5 59 0.0013 31.0 8.0 28 233-260 164-191 (404)
410 KOG0686 COP9 signalosome, subu 56.9 1.8E+02 0.0039 27.6 13.1 62 72-133 152-215 (466)
411 COG3947 Response regulator con 56.7 1.5E+02 0.0033 26.7 14.8 68 337-405 281-352 (361)
412 PF00244 14-3-3: 14-3-3 protei 56.4 1.4E+02 0.003 26.2 10.8 51 414-464 141-200 (236)
413 KOG2063 Vacuolar assembly/sort 56.0 2.8E+02 0.0062 29.6 15.3 144 33-183 474-638 (877)
414 KOG4279 Serine/threonine prote 55.8 1.6E+02 0.0034 30.5 10.6 24 411-434 378-401 (1226)
415 PF08311 Mad3_BUB1_I: Mad3/BUB 55.5 94 0.002 24.0 8.1 42 353-394 81-123 (126)
416 PF14689 SPOB_a: Sensor_kinase 55.3 19 0.0004 23.7 3.2 28 434-461 24-51 (62)
417 cd00280 TRFH Telomeric Repeat 55.1 78 0.0017 26.2 7.1 48 351-398 85-139 (200)
418 KOG2422 Uncharacterized conser 54.9 2.3E+02 0.0051 28.3 11.9 80 240-319 349-431 (665)
419 PF11846 DUF3366: Domain of un 54.3 48 0.001 27.9 6.4 43 354-398 130-172 (193)
420 PF09670 Cas_Cas02710: CRISPR- 54.0 1.6E+02 0.0035 28.0 10.5 55 79-134 140-198 (379)
421 COG1747 Uncharacterized N-term 53.9 2.3E+02 0.005 27.9 19.2 59 138-197 64-124 (711)
422 KOG1464 COP9 signalosome, subu 53.6 1.6E+02 0.0035 26.1 16.8 181 246-426 40-258 (440)
423 COG4976 Predicted methyltransf 52.7 29 0.00063 29.8 4.6 51 381-434 6-64 (287)
424 PF09477 Type_III_YscG: Bacter 52.6 95 0.0021 23.1 9.7 86 283-373 21-106 (116)
425 PHA02875 ankyrin repeat protei 52.2 2.2E+02 0.0048 27.3 15.7 114 150-268 109-230 (413)
426 PRK10564 maltose regulon perip 52.2 26 0.00056 31.5 4.5 36 73-108 260-295 (303)
427 PRK13800 putative oxidoreducta 51.4 3.6E+02 0.0077 29.4 26.3 247 102-363 632-880 (897)
428 PF11663 Toxin_YhaV: Toxin wit 50.7 9.5 0.00021 29.4 1.4 81 389-469 39-131 (140)
429 KOG0545 Aryl-hydrocarbon recep 50.4 78 0.0017 27.6 6.8 105 336-443 179-308 (329)
430 PF12069 DUF3549: Protein of u 50.4 2.1E+02 0.0046 26.5 12.2 88 206-296 170-258 (340)
431 PF07720 TPR_3: Tetratricopept 49.6 23 0.00049 20.2 2.5 23 435-457 3-25 (36)
432 KOG0687 26S proteasome regulat 49.5 2.1E+02 0.0046 26.3 11.8 93 304-398 104-209 (393)
433 PHA02875 ankyrin repeat protei 49.3 2.5E+02 0.0054 27.0 15.6 202 23-232 16-229 (413)
434 cd08819 CARD_MDA5_2 Caspase ac 49.0 95 0.0021 22.1 6.5 37 153-190 49-85 (88)
435 smart00638 LPD_N Lipoprotein N 48.9 3.1E+02 0.0067 27.9 22.4 60 36-99 309-369 (574)
436 PF04910 Tcf25: Transcriptiona 48.8 2.4E+02 0.0052 26.7 16.5 139 151-294 21-165 (360)
437 KOG0403 Neoplastic transformat 48.6 2.6E+02 0.0056 27.0 20.5 58 338-398 512-571 (645)
438 KOG2582 COP9 signalosome, subu 48.4 2.3E+02 0.0051 26.4 12.0 57 243-299 287-347 (422)
439 KOG1308 Hsp70-interacting prot 48.4 21 0.00045 32.6 3.3 92 316-410 126-221 (377)
440 PRK13342 recombination factor 47.9 2.7E+02 0.0058 26.9 16.1 94 338-444 230-333 (413)
441 PF10366 Vps39_1: Vacuolar sor 47.8 1.2E+02 0.0025 22.7 8.0 28 234-261 40-67 (108)
442 PF03745 DUF309: Domain of unk 47.5 53 0.0012 21.5 4.4 34 81-114 10-43 (62)
443 PF09670 Cas_Cas02710: CRISPR- 47.4 2.6E+02 0.0056 26.7 12.1 54 242-296 140-197 (379)
444 PF09454 Vps23_core: Vps23 cor 47.3 36 0.00079 22.6 3.6 50 67-117 5-54 (65)
445 COG3107 LppC Putative lipoprot 46.6 2.1E+02 0.0045 28.3 9.6 115 4-120 16-151 (604)
446 COG0735 Fur Fe2+/Zn2+ uptake r 46.6 1.1E+02 0.0025 24.3 7.0 46 237-282 24-69 (145)
447 PRK09462 fur ferric uptake reg 45.9 1.5E+02 0.0033 23.6 7.8 63 94-157 6-69 (148)
448 PF11846 DUF3366: Domain of un 45.8 81 0.0017 26.5 6.5 30 334-363 143-172 (193)
449 TIGR02270 conserved hypothetic 45.5 2.9E+02 0.0063 26.7 23.1 51 162-212 91-141 (410)
450 PF08311 Mad3_BUB1_I: Mad3/BUB 45.4 1.4E+02 0.0031 23.0 9.2 24 336-359 100-123 (126)
451 smart00777 Mad3_BUB1_I Mad3/BU 45.3 1.4E+02 0.0031 23.0 8.7 22 436-457 102-123 (125)
452 PF12968 DUF3856: Domain of Un 44.6 1.4E+02 0.0031 22.8 7.4 90 348-459 22-126 (144)
453 KOG2297 Predicted translation 44.1 2.5E+02 0.0055 25.6 9.2 146 208-357 189-343 (412)
454 PF02184 HAT: HAT (Half-A-TPR) 44.0 57 0.0012 18.1 3.4 24 350-375 2-25 (32)
455 KOG4567 GTPase-activating prot 43.9 2.6E+02 0.0055 25.6 9.1 84 126-210 264-357 (370)
456 KOG2034 Vacuolar sorting prote 43.5 4.3E+02 0.0093 28.1 29.9 44 52-97 371-416 (911)
457 KOG3364 Membrane protein invol 43.5 1.6E+02 0.0035 23.1 10.5 66 367-434 29-106 (149)
458 KOG0530 Protein farnesyltransf 43.4 2.4E+02 0.0052 25.1 11.6 124 345-470 53-184 (318)
459 PF10255 Paf67: RNA polymerase 42.6 1.1E+02 0.0025 29.1 7.3 87 142-228 77-190 (404)
460 PRK11639 zinc uptake transcrip 42.5 1.1E+02 0.0024 25.1 6.5 44 239-282 31-74 (169)
461 PF11768 DUF3312: Protein of u 41.8 3.7E+02 0.008 26.8 10.6 90 308-398 412-506 (545)
462 PF08424 NRDE-2: NRDE-2, neces 41.7 2.9E+02 0.0063 25.6 14.3 96 301-398 16-130 (321)
463 PF15469 Sec5: Exocyst complex 41.6 1.1E+02 0.0023 25.5 6.5 26 448-473 154-179 (182)
464 COG4976 Predicted methyltransf 41.3 77 0.0017 27.4 5.4 57 344-405 4-61 (287)
465 PF12862 Apc5: Anaphase-promot 41.3 1.3E+02 0.0029 21.6 7.5 56 244-299 9-72 (94)
466 PF10516 SHNi-TPR: SHNi-TPR; 41.3 65 0.0014 18.7 3.6 28 434-461 2-29 (38)
467 PF14669 Asp_Glu_race_2: Putat 41.0 2.2E+02 0.0047 24.0 13.1 23 269-291 182-204 (233)
468 KOG3364 Membrane protein invol 40.9 56 0.0012 25.5 4.1 53 411-463 47-101 (149)
469 KOG0128 RNA-binding protein SA 40.8 4.6E+02 0.01 27.7 21.6 381 69-470 112-534 (881)
470 COG4455 ImpE Protein of avirul 40.7 2.4E+02 0.0052 24.4 11.0 55 341-397 7-62 (273)
471 KOG4507 Uncharacterized conser 40.3 65 0.0014 32.0 5.4 84 381-464 618-707 (886)
472 COG5187 RPN7 26S proteasome re 40.2 2.8E+02 0.0061 25.0 10.1 98 298-397 109-219 (412)
473 PF13934 ELYS: Nuclear pore co 38.9 2.6E+02 0.0057 24.3 16.0 96 150-247 88-186 (226)
474 PF04090 RNA_pol_I_TF: RNA pol 38.4 2.5E+02 0.0054 23.8 10.2 62 336-398 42-104 (199)
475 COG2912 Uncharacterized conser 37.0 74 0.0016 28.2 4.9 56 378-433 189-249 (269)
476 PRK11639 zinc uptake transcrip 36.7 1.6E+02 0.0034 24.2 6.6 48 338-385 28-75 (169)
477 COG4259 Uncharacterized protei 36.4 1.3E+02 0.0029 21.9 5.1 53 416-470 54-107 (121)
478 KOG1498 26S proteasome regulat 36.1 3.9E+02 0.0084 25.4 13.5 66 377-464 178-243 (439)
479 PF12796 Ank_2: Ankyrin repeat 36.1 83 0.0018 22.0 4.5 14 52-65 7-20 (89)
480 PF02847 MA3: MA3 domain; Int 35.5 98 0.0021 23.1 5.0 22 75-96 7-28 (113)
481 KOG4279 Serine/threonine prote 34.6 1.5E+02 0.0033 30.6 7.0 21 411-431 299-319 (1226)
482 PF09454 Vps23_core: Vps23 cor 34.5 98 0.0021 20.6 4.1 50 332-382 5-54 (65)
483 cd07153 Fur_like Ferric uptake 34.3 1E+02 0.0022 23.1 4.9 48 238-285 5-52 (116)
484 KOG2758 Translation initiation 34.2 3.8E+02 0.0081 24.7 12.4 71 390-461 112-195 (432)
485 KOG2659 LisH motif-containing 33.0 2.9E+02 0.0063 23.9 7.6 64 33-98 22-92 (228)
486 KOG2659 LisH motif-containing 32.7 3.3E+02 0.0072 23.6 7.9 98 301-398 23-131 (228)
487 KOG2034 Vacuolar sorting prote 32.6 6.4E+02 0.014 26.9 19.1 51 210-260 366-416 (911)
488 TIGR02996 rpt_mate_G_obs repea 31.9 1.2E+02 0.0025 18.1 3.9 34 421-454 4-37 (42)
489 PF03745 DUF309: Domain of unk 31.8 1.5E+02 0.0033 19.4 4.9 33 244-276 10-42 (62)
490 PF11123 DNA_Packaging_2: DNA 31.7 85 0.0018 21.3 3.3 29 55-83 13-44 (82)
491 PF15297 CKAP2_C: Cytoskeleton 31.7 1E+02 0.0023 28.5 5.1 32 435-466 142-173 (353)
492 COG4003 Uncharacterized protei 31.5 1.3E+02 0.0029 20.9 4.3 27 6-32 35-61 (98)
493 PRK14136 recX recombination re 31.3 4.1E+02 0.0089 24.3 9.8 104 352-459 194-302 (309)
494 PF01475 FUR: Ferric uptake re 31.3 79 0.0017 24.0 3.9 48 237-284 11-58 (120)
495 KOG1839 Uncharacterized protei 31.2 2.2E+02 0.0049 31.5 8.1 24 140-163 973-996 (1236)
496 cd07153 Fur_like Ferric uptake 31.2 1.2E+02 0.0027 22.7 4.9 47 340-386 5-51 (116)
497 PRK14956 DNA polymerase III su 31.2 4E+02 0.0087 26.3 9.2 101 250-371 183-284 (484)
498 PF02847 MA3: MA3 domain; Int 31.1 2.2E+02 0.0048 21.1 7.4 60 309-368 7-70 (113)
499 KOG0545 Aryl-hydrocarbon recep 30.9 3.8E+02 0.0082 23.7 7.9 64 338-405 233-296 (329)
500 PF11817 Foie-gras_1: Foie gra 30.8 2E+02 0.0043 25.4 6.8 19 77-95 17-35 (247)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.3e-73 Score=587.17 Aligned_cols=489 Identities=31% Similarity=0.560 Sum_probs=461.6
Q ss_pred CCcccchHHHHHHhh---chhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHH
Q 041942 2 RTNRHRSSRLWKKCT---NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIR 78 (498)
Q Consensus 2 ~~~~~~~~~~l~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 78 (498)
+|+..+|..++.+|+ +++.+++++..+.+.|+.||+.+++.+|. +|++ .|++++|.++|+.|+.||..+||.+|.
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~-~y~k-~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT-MYVK-CGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHH-HHhc-CCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 588999999999996 45678999999999999999999999999 9999 999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhH
Q 041942 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158 (498)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 158 (498)
+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCc--------------------------------
Q 041942 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDL-------------------------------- 202 (498)
Q Consensus 159 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-------------------------------- 202 (498)
|.++|++|..+|..+|+.++.+|++.|++++|+++|++|. .||.
T Consensus 342 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999985 4444
Q ss_pred ---chHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 041942 203 ---VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279 (498)
Q Consensus 203 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 279 (498)
.+|+.|+++|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|+
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 45566778889999999999999999999999999999999999999999999999986 58999999999999999
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
+.|+++.+.+++ ..+.+.|..++..++++|+++|++.|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|+
T Consensus 501 ~~g~l~~~~~i~-~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 501 RIGALMCGKEIH-AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hhchHHHhHHHH-HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999 77788999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH-------hhC-------------------
Q 041942 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------VHG------------------- 413 (498)
Q Consensus 360 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-------~~g------------------- 413 (498)
+|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+..|+.|+..+|. +.|
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~ 658 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHH
Confidence 999999999999999999999999999999999999996689999977776 444
Q ss_pred -------------ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeEEEecCCee
Q 041942 414 -------------DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480 (498)
Q Consensus 414 -------------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 480 (498)
+.+.|+.+.+++++++|+++..|..|++.|...|+|++|.++.+.|+++|+++.||+|||++. +.+
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~-~~~ 737 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK-GKV 737 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC-CEE
Confidence 455555555566778899999999999999999999999999999999999999999999999 999
Q ss_pred EEEecCCCCCCCCCCC
Q 041942 481 LQYLFNLKPKPNSGNL 496 (498)
Q Consensus 481 ~~~~~~~~~~~~~~~~ 496 (498)
|.|..||++||.+++|
T Consensus 738 ~~f~~~d~~h~~~~~i 753 (857)
T PLN03077 738 HAFLTDDESHPQIKEI 753 (857)
T ss_pred EEEecCCCCCcchHHH
Confidence 9999999999999887
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-66 Score=524.86 Aligned_cols=455 Identities=26% Similarity=0.400 Sum_probs=386.5
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC-----CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhH
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-----EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTF 108 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 108 (498)
.++...++.+|. .+.+ .|++++|.++|++|. .||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|
T Consensus 84 ~~~~~~~~~~i~-~l~~-~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIE-KLVA-CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCceeHHHHHH-HHHc-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 334557778887 7777 888888888887774 467788888888888888888888888888888888888888
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCC----CCCcchHHHHHHHHHhc
Q 041942 109 SFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA----KMDVVAWSSLTAGYARR 184 (498)
Q Consensus 109 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~ 184 (498)
+.|+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|++.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 888888888888888888888875 4678888888888888888888888887664 36777888888888888
Q ss_pred CChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 041942 185 GELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260 (498)
Q Consensus 185 ~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 260 (498)
|..+.+.+++..+. .+|..+|+.|+++|++.|++++|.++|+.|.++|.++|+.++.+|++.|++++|+++|++|.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88888887776665 67888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 041942 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340 (498)
Q Consensus 261 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 340 (498)
+.|+.||..||+.++.+|++.|+++.|.+++ ..+.+.+..|+..++++|+++|++.|++++|.++|++|.++|..+||.
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~-~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAH-AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHH-HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 8888888888888888888888888888888 666777888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH----------
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~---------- 410 (498)
||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.++.|+.|+..+|.
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888888888877678888765554
Q ss_pred -----------------------------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 411 -----------------------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
..|+++.|+.+++++.++.|++..+|..|+.+|.+.|++++|.+++++|++
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 566777777777788888999999999999999999999999999999999
Q ss_pred CCCccCCceeEEEecCCeeEEEecCCCCCCCCCCC
Q 041942 462 SDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496 (498)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (498)
+|+.+.||+||+++. +.+|.|..||.+||..++|
T Consensus 557 ~g~~k~~g~s~i~~~-~~~~~f~~~d~~h~~~~~i 590 (697)
T PLN03081 557 KGLSMHPACTWIEVK-KQDHSFFSGDRLHPQSREI 590 (697)
T ss_pred cCCccCCCeeEEEEC-CeEEEEccCCCCCccHHHH
Confidence 999999999999999 9999999999999998876
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-64 Score=521.95 Aligned_cols=460 Identities=28% Similarity=0.471 Sum_probs=436.9
Q ss_pred CCcccchHHHHHHhh---chhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHH
Q 041942 2 RTNRHRSSRLWKKCT---NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIR 78 (498)
Q Consensus 2 ~~~~~~~~~~l~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 78 (498)
+|+..++..++..|. ....+.+++..+.+.|..++..+++.+|. .|++ .|+++.|.++|+.|++||+.+||.+|.
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~-~~~~-~g~~~~A~~~f~~m~~~d~~~~n~li~ 160 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS-MFVR-FGELVHAWYVFGKMPERDLFSWNVLVG 160 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH-HHHh-CCChHHHHHHHhcCCCCCeeEHHHHHH
Confidence 467778888888885 45678899999999999999999999999 9999 999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhH
Q 041942 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158 (498)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 158 (498)
+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.|+..+++.|+.+|++.|++++
T Consensus 161 ~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----C-----------------------------------
Q 041942 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----V----------------------------------- 199 (498)
Q Consensus 159 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~----------------------------------- 199 (498)
|.++|++|..+|..+|++++.+|++.|++++|+++|++|. .
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 320 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999985 2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 279 (498)
||..+|+.++.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 45667777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
+.|+++.|.+++ ..+.+.|..++..++++|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|+
T Consensus 401 ~~g~~~~a~~l~-~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 401 CLGDLDVGVKLH-ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred ccchHHHHHHHH-HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999 7888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------hhHHHhhCChHHHHHHHHHHHccCCCC
Q 041942 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-------IRHYGVHGDVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 360 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~y~~~g~~~~a~~~~~~~~~~~~~~ 432 (498)
+|.. +++||..||..++.+|++.|+++.+.+++..+.+ .|+.++ +..|.++|++++|.+.|+.+ ++|
T Consensus 480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d 553 (857)
T PLN03077 480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKD 553 (857)
T ss_pred HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCC
Confidence 9986 5899999999999999999999999999999999 899998 67788999999999999986 678
Q ss_pred CchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCce
Q 041942 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470 (498)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 470 (498)
..+|+.|+.+|.+.|+.++|+++|++|.+.|+.|+...
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 89999999999999999999999999999999876544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-61 Score=493.25 Aligned_cols=458 Identities=16% Similarity=0.222 Sum_probs=408.1
Q ss_pred cchHHHHHH---hhchhhhHHHHHHHHHhcC-CcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHh
Q 041942 6 HRSSRLWKK---CTNLRTLKQIQALVTINGF-NSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81 (498)
Q Consensus 6 ~~~~~~l~~---~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 81 (498)
..+..++.+ +|+++.|.++++.|.+.|+ .++..+++.++. .+.+ .|.+++|.++|+.|..||..+|+.+|.+|+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~-~~~~-~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFK-ACKK-QRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHHH-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344444444 4899999999999999996 567777777888 8888 999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHH
Q 041942 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASV 161 (498)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 161 (498)
+.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCC----CCCcchHHHHHHHHHhcCChHHHHHHHhcCC------CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 041942 162 LFDGDA----KMDVVAWSSLTAGYARRGELSMARSLFDEMP------VRDLVSWNVMITGYAKQGEMEKANELFNEVPK- 230 (498)
Q Consensus 162 ~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 230 (498)
+|+.|. .||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 998774 4899999999999999999999999999994 68999999999999999999999999999975
Q ss_pred ---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhH
Q 041942 231 ---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307 (498)
Q Consensus 231 ---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (498)
|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++ ..+.+.+..|+..+|
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~-~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL-QDARKQGIKLGTVSY 687 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHcCCCCCHHHH
Confidence 6779999999999999999999999999999999999999999999999999999999999 777788999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMR----DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 383 (498)
+.||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999985 5899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHHH-----------hh-------------------CChHHHHHHHHHHHccC----
Q 041942 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG-----------VH-------------------GDVELGRLANKRLLNMR---- 429 (498)
Q Consensus 384 g~~~~a~~~~~~~~~~~~~~p~~~~y~-----------~~-------------------g~~~~a~~~~~~~~~~~---- 429 (498)
|+++.|.+++++|.+ .|+.||..+|. ++ +..+.|..+|++|++..
T Consensus 768 G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 768 DDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 999999999999998 89999966654 11 12345667777666422
Q ss_pred --------------------------------CCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCc
Q 041942 430 --------------------------------KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469 (498)
Q Consensus 430 --------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 469 (498)
+++..+|+.++.++.+. .++|..++++|.+.|+.|+-.
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 22345677777776321 357999999999999887654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-60 Score=485.26 Aligned_cols=423 Identities=16% Similarity=0.226 Sum_probs=287.0
Q ss_pred CcccchHHHHHHh---hchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC----CCChhhHHH
Q 041942 3 TNRHRSSRLWKKC---TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT----EPDTFMYNT 75 (498)
Q Consensus 3 ~~~~~~~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ 75 (498)
|+..+|..++..| |+.+.|.+++..|.+.|+.||..+|+.+|. .|++ .|++++|.++|++|. .||..+|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~-~y~k-~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS-TCAK-SGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHh-CcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 5556666666655 355566777777777777777777777777 6777 777777777777765 567777777
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHH--hCCCCChHHHHHHHHHHHhc
Q 041942 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK--YGFEFNRFVRNSLIYFHANC 153 (498)
Q Consensus 76 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 153 (498)
+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 7777777777777777777777777777777777777777777777777777777765 45667777777777777777
Q ss_pred CChhHHHHhhccCCC----CCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHH
Q 041942 154 GDLNTASVLFDGDAK----MDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELF 225 (498)
Q Consensus 154 g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 225 (498)
|++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 777777777765543 455667777777777777777777777766 566667777777777777777777777
Q ss_pred hhCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCC
Q 041942 226 NEVPK----RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301 (498)
Q Consensus 226 ~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 301 (498)
+.|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++| ..|...|..
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf-~eM~~~Gi~ 751 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL-SEMKRLGLC 751 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHcCCC
Confidence 76653 5666777777777777777777777777776677777777777777777777777777777 455556667
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHh----C-------------------CCHHHH
Q 041942 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMR----DRDVSTWSTLIGGLAF----H-------------------GFAEES 354 (498)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~----~-------------------~~~~~A 354 (498)
||..+|+.++.+|++.|++++|.++|..|. .||..+|+.++..|.+ . +..+.|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 777777777777777777777777776665 2566677776654321 0 112456
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH----hhCC-hHHHHHHHHHHHccC
Q 041942 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----VHGD-VELGRLANKRLLNMR 429 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~----~~g~-~~~a~~~~~~~~~~~ 429 (498)
..+|++|++.|+.||..||+.++.++++.+..+.+..+++.|.. .+..|+..+|. -.|+ .++|..+++++.+..
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcC
Confidence 67777777777777777777777666666666666666666555 45555555555 3343 358999999999654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-58 Score=467.11 Aligned_cols=461 Identities=21% Similarity=0.304 Sum_probs=399.9
Q ss_pred CCcccchHHHHHHhh---chhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHH
Q 041942 2 RTNRHRSSRLWKKCT---NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIR 78 (498)
Q Consensus 2 ~~~~~~~~~~l~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 78 (498)
.|+..+|..++.+|. +.+.+.+++..|.+.|+.||+.+++.++. .|++ .|+++.|.++|+.|+.||..+||.+|.
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~-~y~k-~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL-MHVK-CGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH-HHhc-CCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 478889999999886 55678999999999999999999999999 9999 999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhH
Q 041942 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158 (498)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 158 (498)
+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHhhCC----C
Q 041942 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVP----K 230 (498)
Q Consensus 159 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~ 230 (498)
|.++|++|.++|..+|+.++.+|++.|++++|.++|++|. .||..||+.++.+|++.|++++|.+++..|. .
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999996 7899999999999999999999999888886 3
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHH
Q 041942 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310 (498)
Q Consensus 231 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 310 (498)
+|..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++| +.|...|+.||..+|+.+
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf-~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMF-ERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCCCHHHHHHH
Confidence 688889999999999999999999999886 578889999999999999999999999 666778889999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 311 IDMYAKCGSIERAIEVFLGMRD-----RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
+.+|++.|.+++|.++|+.|.+ |+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999988863 78888999999999999999998888765 478888899999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCC--CCCchHHHHH-------HH---H-H
Q 041942 386 VEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRK--DESGDYVLLS-------NI---Y-A 444 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~-------~~---~-~ 444 (498)
++.|..+++++.+ +.|+ ...|.+.|++++|.++++.+.+..- .....|..+. .. . .
T Consensus 510 ~~~a~~~~~~l~~---~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~ 586 (697)
T PLN03081 510 LELGRLAAEKLYG---MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQ 586 (697)
T ss_pred cHHHHHHHHHHhC---CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCcc
Confidence 9999998888854 5565 4456688999999999998886542 1111121110 00 0 0
Q ss_pred hCCCchHHHHHHHHhhhCCCccCCceeEEEe
Q 041942 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475 (498)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 475 (498)
...-++...++.++|++.|+.|+......++
T Consensus 587 ~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~ 617 (697)
T PLN03081 587 SREIYQKLDELMKEISEYGYVAEENELLPDV 617 (697)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcchhhccc
Confidence 0112345678889999999998776655444
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.1e-29 Score=264.12 Aligned_cols=434 Identities=11% Similarity=0.024 Sum_probs=255.8
Q ss_pred hchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHH
Q 041942 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFL 92 (498)
Q Consensus 16 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~ 92 (498)
|+.+.|..++..+... .++++.++..+.. .+.. .|++++|.+.|+.+. +.+...+..+...+...|++++|.+.
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~-~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGA-IYLG-KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHH-HHHh-CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444444444444332 2233444444444 5555 566666666665543 23344455555555566666666666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---C
Q 041942 93 YTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---M 169 (498)
Q Consensus 93 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 169 (498)
|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|...|++++|..+++.+.. .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 66655432 3344555555555556666666666666665543 33445555566666666666666666655432 3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGY 243 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 243 (498)
+...|..+..++.+.|++++|...|+++. +.+...+..+..++.+.|++++|...|+++.+ .+..++..++..+
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 44456666666666666666666666654 33445566666666666666666666665543 2345666666666
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...|+..+... |+..++..+..++.+.|++++|
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHH
Confidence 66666666666666666554 3455556666666666677777766664444332 2224445566666667777777
Q ss_pred HHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc
Q 041942 324 IEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400 (498)
Q Consensus 324 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 400 (498)
.+.++.+.+ .+...+..+...|...|++++|.++|+++.+.. +++...+..+...+...|+ .+|...++++....
T Consensus 756 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 666665542 345566666667777777777777777776643 3345666666667777776 66777777665521
Q ss_pred CCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 401 NIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 401 ~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+-.|. ...|...|++++|...++++++.+|.++.++..++.+|...|++++|.+++++|+
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11221 2233366777777777777777777777777777777777777777777777764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1e-27 Score=254.79 Aligned_cols=408 Identities=12% Similarity=0.065 Sum_probs=292.0
Q ss_pred hhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhh
Q 041942 47 GSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 123 (498)
.+.+ .|++++|.++++.+. +++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 440 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLR-SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHh-cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 4445 556666666655554 3345566666667777777777777777766542 3344455566666666777777
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC--
Q 041942 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP-- 198 (498)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 198 (498)
|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...|+++.. .+...+..++..+.+.|++++|..+++.+.
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 777777776654 34566667777777777777777777765432 344456667777777777777777777766
Q ss_pred -CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041942 199 -VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274 (498)
Q Consensus 199 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 274 (498)
+.+...|..+..++...|++++|...|+.+.+ .+...+..+...+...|++++|..+++++.+.. +.+..++..+
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 44556777777778888888888887777653 345567777777778888888888888777653 3456677777
Q ss_pred HHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHH
Q 041942 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAE 352 (498)
Q Consensus 275 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 352 (498)
...+...|++++|..+++.+.... +.+...+..+...+...|++++|...|+.+.. |+..++..++.++...|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHH
Confidence 777888888888888884443332 34555666777888888888888888887653 55567777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHH
Q 041942 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~ 424 (498)
+|.+.++++.+.. +.+...+..+...|...|++++|.++++++.+ ..|+ ...|...|+ .+|...+++
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK---KAPDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 8888888888743 34577778888888888999999999988877 2343 233347777 779999999
Q ss_pred HHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 425 LLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
+++..|+++..+..++.++...|++++|++.++++.+.+..
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999887653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=4e-21 Score=205.39 Aligned_cols=443 Identities=11% Similarity=-0.003 Sum_probs=274.3
Q ss_pred HHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChH
Q 041942 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPL 87 (498)
Q Consensus 11 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~ 87 (498)
++..-|+.+.|.+.+..+.+.. +|+.............. .|+.++|.+.|+.+. +.+...+..+...+...|+.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~-~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKL-PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhC-CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 5556678888888888887653 23322222222213334 688999999998887 334557778888888899999
Q ss_pred HHHHHHHHHHhCCC------------------C--------------CCHhhH---------------------HHHHHH
Q 041942 88 DAVFLYTQMEKCSI------------------K--------------PNKFTF---------------------SFVLKA 114 (498)
Q Consensus 88 ~A~~~~~~m~~~~~------------------~--------------p~~~~~---------------------~~li~~ 114 (498)
+|++.|+++.+... . |+...+ ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999888754310 0 110000 011233
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC--CCc---chHH------------HH
Q 041942 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK--MDV---VAWS------------SL 177 (498)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~l 177 (498)
+...|++++|...|++.++.. +.+..++..+..+|.+.|++++|...|++..+ |+. ..|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 456788899999999988864 34677888899999999999999999886554 221 1121 12
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHH-------------
Q 041942 178 TAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSWNA------------- 238 (498)
Q Consensus 178 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~------------- 238 (498)
...+.+.|++++|+..|+++. +.+...+..+..++...|++++|++.|+++.+ | +...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 345678889999999998887 44556777788888889999999998888764 2 2222222
Q ss_pred -----------------------------HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHH
Q 041942 239 -----------------------------MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289 (498)
Q Consensus 239 -----------------------------l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 289 (498)
+...+...|++++|+..|++.++.. +-+...+..+...+...|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2334456788888888888888764 2355667778888888999999999
Q ss_pred HHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-------------------------------------
Q 041942 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD------------------------------------- 332 (498)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------------------- 332 (498)
.+++.+...+..+ ..+..+...+...++.++|...++.+..
T Consensus 517 ~l~~al~~~P~~~--~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 517 LMRRLAQQKPNDP--EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHcCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 8866665443322 2222233333444555555555444431
Q ss_pred ------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 333 ------RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 333 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
.+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|.+.++.+.+..+-.++
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 23334445555566666666666666666652 33 3455555666666666666666666655441111111
Q ss_pred -----hhHHHhhCChHHHHHHHHHHHccCCCCC------chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 406 -----IRHYGVHGDVELGRLANKRLLNMRKDES------GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 406 -----~~~y~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
...|...|++++|.+.++++++..|+++ .++..++..+...|++++|+..|++...
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2233356666666666666665554433 2444456666666666666666666643
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=3.1e-20 Score=198.66 Aligned_cols=371 Identities=12% Similarity=0.046 Sum_probs=241.1
Q ss_pred hhhccCCChHHHHHhcccCC--CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-CHhhHH------------H
Q 041942 47 GSVVIPGAINYAHKMFVKIT--EP-DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP-NKFTFS------------F 110 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~------------~ 110 (498)
.+.. .|++++|...|+... .| +...+..+...+.+.|++++|+..|++..+..... ....|. .
T Consensus 278 ~~~~-~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVD-SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 4455 788888888887775 33 56677778888888888888888888877643111 111111 1
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCCh
Q 041942 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGEL 187 (498)
Q Consensus 111 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 187 (498)
....+.+.|++++|...++++.+.. +.+...+..+..++...|++++|.+.|++..+ .+...+..+...+. .++.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 1234556788888888888888764 34556677777888888888888888876553 23334444444442 3445
Q ss_pred HHHHHHHhcCCCCC------------cchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHH
Q 041942 188 SMARSLFDEMPVRD------------LVSWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSWNAMISGYVLCGMNKQA 252 (498)
Q Consensus 188 ~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a 252 (498)
++|+.+++.+.... ...+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 55655555543110 11233344455555666666666555542 2 333444555555566666666
Q ss_pred HHHHHHHHhCCCCCCHHHHH--------------------------------------------HHHHHHhccCCchHHH
Q 041942 253 LEMFEEMRSVGERPDDVTML--------------------------------------------SLLTACADLGDLEVGK 288 (498)
Q Consensus 253 ~~~~~~m~~~g~~p~~~~~~--------------------------------------------~li~~~~~~~~~~~a~ 288 (498)
...++++.+.. +.+...+. .....+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 66665555432 11121111 2233455566666666
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 041942 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365 (498)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 365 (498)
.+++ ..+.+...+..+...+.+.|++++|+..|+++.+ | +...+..++..|...|++++|++.++...+
T Consensus 594 ~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~-- 665 (1157)
T PRK11447 594 ALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA-- 665 (1157)
T ss_pred HHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--
Confidence 6652 1234555667788999999999999999998774 3 678899999999999999999999998887
Q ss_pred CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----------hhHHHhhCChHHHHHHHHHHHccC
Q 041942 366 VRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----------IRHYGVHGDVELGRLANKRLLNMR 429 (498)
Q Consensus 366 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----------~~~y~~~g~~~~a~~~~~~~~~~~ 429 (498)
..|+ ..+...+..++...|++++|.++++.+....+-.|. ...|...|+.++|...|++++...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 4454 556677788899999999999999999873322232 223458899999999999997644
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.7e-21 Score=178.15 Aligned_cols=367 Identities=17% Similarity=0.209 Sum_probs=307.7
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChH-HHHHHH
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP-NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF-VRNSLI 147 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 147 (498)
..+|..+.+.+-..|++.+|+..++.+.+. +| ....|..+..++...|+.+.|.+.|.+.++. .|+.. ....+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 457888999999999999999999999885 45 5678999999999999999999999999885 45443 444566
Q ss_pred HHHHhcCChhHHHHhhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHH
Q 041942 148 YFHANCGDLNTASVLFDGDAK--M-DVVAWSSLTAGYARRGELSMARSLFDEMPVRD---LVSWNVMITGYAKQGEMEKA 221 (498)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A 221 (498)
..+...|++++|..-|.+..+ | -...|+.|...+...|+...|+.-|++..+.| ...|-.|...|...+.++.|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 667778999999888876443 3 34679999999999999999999999988433 35888899999999999999
Q ss_pred HHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 041942 222 NELFNEVPK--R-DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD-DVTMLSLLTACADLGDLEVGKKVHCTLLDM 297 (498)
Q Consensus 222 ~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 297 (498)
...+.+... | ..+.|..+...|-..|..+.|+..|++.++. .|+ ...|+.+..++-..|++.+|.+.|.+.+.-
T Consensus 272 vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999887653 4 4567888888899999999999999999876 444 568999999999999999999999777766
Q ss_pred hcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 041942 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITF 373 (498)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~ 373 (498)
.... ....+.|...|...|.+++|..+|....+ | -...++.|...|-++|++++|+..|++.++ ++|+ ...|
T Consensus 350 ~p~h--adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~ 425 (966)
T KOG4626|consen 350 CPNH--ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL 425 (966)
T ss_pred CCcc--HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence 5433 44557899999999999999999987765 3 345789999999999999999999999998 8898 6789
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 041942 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (498)
+.+...|-..|+.+.|.+.+.+.+. ++|. ...|...|++.+|...|+.++.+.|+.+.+|..+..++--
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 9999999999999999999999877 7887 4556689999999999999999999999999888877655
Q ss_pred CCCc
Q 041942 446 RGEW 449 (498)
Q Consensus 446 ~g~~ 449 (498)
-.+|
T Consensus 503 vcdw 506 (966)
T KOG4626|consen 503 VCDW 506 (966)
T ss_pred Hhcc
Confidence 4444
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4e-21 Score=175.84 Aligned_cols=403 Identities=15% Similarity=0.094 Sum_probs=327.2
Q ss_pred CCChHHHHHhcccCCC--CC-hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHH
Q 041942 52 PGAINYAHKMFVKITE--PD-TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 128 (498)
.|++++|++--.-.-+ |+ ....-.+-..+.+..+.+....--....+. .+--.++|..+...+-..|+++.|..++
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y 139 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALY 139 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 5777777775544332 21 112222334456666666655443333332 2445679999999999999999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcch---HHHHHHHHHhcCChHHHHHHHhcCC--CCC-c
Q 041942 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA---WSSLTAGYARRGELSMARSLFDEMP--VRD-L 202 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~ 202 (498)
+.+++.. +-....|..+..++...|+.+.|...|....+-++.. .+.+...+-..|+.++|...+-+.. .|. .
T Consensus 140 ~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fA 218 (966)
T KOG4626|consen 140 RAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFA 218 (966)
T ss_pred HHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCcee
Confidence 9999864 3357789999999999999999999998776644433 2335555667899999998888776 444 4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPKRD---VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP-DDVTMLSLLTAC 278 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 278 (498)
+.|+.|...+-..|++..|..-|++..+-| ...|-.|...|...+.+++|...|.+.... .| ....+..+...|
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIY 296 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEE
Confidence 789999999999999999999999998643 357888999999999999999999887755 45 456788888889
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHH
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
...|.++.|++.|++.+...+.-| ..|+.|..++-..|++.+|++.+.+... | ...+.+.|...|...|.++.|.
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~F~--~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPNFP--DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCCch--HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH
Confidence 999999999999977776664444 4578899999999999999999988764 3 4678899999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHH
Q 041942 356 AMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLL 426 (498)
Q Consensus 356 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~ 426 (498)
.+|....+ +.|. ....+.|...|-++|++++|...+++.++ +.|+ ..+|...|+...|.+.+.+++
T Consensus 375 ~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 375 RLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 99999998 7777 67889999999999999999999999977 8888 456668999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
..+|.-..+.+.|+.+|-.+|+..+|+.-|++..+....
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999876543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.3e-19 Score=182.27 Aligned_cols=380 Identities=11% Similarity=0.016 Sum_probs=282.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHh
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHAN 152 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (498)
+......+.+.|+++.|+..|++... +.|+...|..+..++.+.|+++.|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44566678888999999999998876 46777888888888888999999999999988864 3456688888889999
Q ss_pred cCChhHHHHhhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHhcCC-------------------------------
Q 041942 153 CGDLNTASVLFDGDAKM---DVVAWSSLTAGYARRGELSMARSLFDEMP------------------------------- 198 (498)
Q Consensus 153 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------------- 198 (498)
.|++++|..-|...... +......++..+........+...++.-.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 99999988766543221 11111111111111111111111111110
Q ss_pred CCC-cchHHHHHHHH---HhcCChHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 041942 199 VRD-LVSWNVMITGY---AKQGEMEKANELFNEVPKR------DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268 (498)
Q Consensus 199 ~~~-~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 268 (498)
.+. ...+..+...+ ...+++++|.+.|+...+. ....|+.+...+...|++++|+..|++..+.. +-..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 000 01111111111 2236788999999887642 34578888889999999999999999998763 2235
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHH
Q 041942 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGL 345 (498)
Q Consensus 269 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 345 (498)
..|..+...+...|++++|...|++.+... +.+...+..+...+...|++++|...|++..+ | +...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 678888888999999999999997776654 34567778899999999999999999998764 3 567788899999
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCCh---------------hHH
Q 041942 346 AFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI---------------RHY 409 (498)
Q Consensus 346 ~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---------------~~y 409 (498)
.+.|++++|+..+++.++. .| +...+..+...+...|++++|.+.+++..+ +.|+. ..|
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHH
Confidence 9999999999999999884 45 477888899999999999999999999887 33331 112
Q ss_pred HhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 410 GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
...|++++|...++++++++|++..++..++.++...|++++|++.|++..+..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 246999999999999999999999999999999999999999999999987643
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=1.2e-18 Score=178.70 Aligned_cols=208 Identities=12% Similarity=0.040 Sum_probs=147.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHH
Q 041942 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326 (498)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (498)
++.++|...+.+.... .|+......+...+...|++++|...|++.... +|+...+..+...+.+.|+.++|...
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555666655555544 344443333344445777777777777443322 22223344556667778888888888
Q ss_pred HhcCCCCChh---HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCC
Q 041942 327 FLGMRDRDVS---TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403 (498)
Q Consensus 327 ~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 403 (498)
++...+.++. .+..+.......|++++|...+++..+ ..|+...+..+...+.+.|++++|...+++... ..
T Consensus 565 l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~ 639 (987)
T PRK09782 565 LQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LE 639 (987)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hC
Confidence 8766643322 222333334455899999999998888 567778888888889999999999999999877 56
Q ss_pred CC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 404 PN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 404 p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
|+ ...+...|++++|...++++++.+|+++.++..++.++...|++++|+..+++..+...
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 76 22344888999999999999999999999999999999999999999999999976553
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.8e-20 Score=179.05 Aligned_cols=287 Identities=15% Similarity=0.115 Sum_probs=147.6
Q ss_pred HHHhcCChhHHHHhhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHhcCC-CCC------cchHHHHHHHHHhcCCh
Q 041942 149 FHANCGDLNTASVLFDGDAKM---DVVAWSSLTAGYARRGELSMARSLFDEMP-VRD------LVSWNVMITGYAKQGEM 218 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~------~~~~~~l~~~~~~~~~~ 218 (498)
.+...|++++|...|+++... +..++..+...+.+.|++++|..+++.+. .++ ...+..+...|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555666666666554432 22344455555555555555555555544 111 12334444444445555
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 041942 219 EKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295 (498)
Q Consensus 219 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 295 (498)
++|..+|+++.+ .+..++..++..+...|++++|...++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------- 178 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence 555555444432 2333444444444444555555544444443322111100
Q ss_pred HhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 041942 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372 (498)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 372 (498)
....+..+...+.+.|++++|...|+++.+ | +...+..+...+...|++++|.++++++.+.+......+
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 011223344444555555555555554432 1 233445555555555666666666655554321111234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (498)
+..+..+|.+.|++++|...++++.+ ..|+ ...|.+.|++++|...++++++..|++. .+..+...+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~ 327 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhh
Confidence 45555555556666666666655554 2333 2223355666666666666666667665 45555555543
Q ss_pred ---CCCchHHHHHHHHhhhCCCccCCcee
Q 041942 446 ---RGEWNRVEKVRKLMDDSDIKKQPGCS 471 (498)
Q Consensus 446 ---~g~~~~A~~~~~~m~~~~~~~~~~~~ 471 (498)
.|+.++|+.++++|.++++.|+|.+.
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 56999999999999999999888864
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=6.8e-20 Score=175.06 Aligned_cols=295 Identities=13% Similarity=0.037 Sum_probs=147.4
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCC---hHHHHHHHHHHHhcCCh
Q 041942 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN---RFVRNSLIYFHANCGDL 156 (498)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 156 (498)
+...|++++|+..|+++.+.+ +.+..++..+...+.+.|+++.|..+++.+.+.+..++ ..++..+...|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345566666666666666542 22344555666666666666666666666655321111 13345555555555555
Q ss_pred hHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 041942 157 NTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMPV--RDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231 (498)
Q Consensus 157 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 231 (498)
++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.. |+.... .
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------------------~ 178 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-------------------------E 178 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-------------------------H
Confidence 555555554433 2333444555555555555555555554431 110000 0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHH
Q 041942 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311 (498)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 311 (498)
....+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|..++++..... .......+..++
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~l~ 256 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-PEYLSEVLPKLM 256 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-hhhHHHHHHHHH
Confidence 00122333444444555555555555544332 1223344444445555555555555553333221 111123344555
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh---cCCH
Q 041942 312 DMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH---AGKV 386 (498)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~ 386 (498)
.+|...|++++|...++++.+ |+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.
T Consensus 257 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~ 334 (389)
T PRK11788 257 ECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRA 334 (389)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccc
Confidence 555555566665555555442 4444455566666666666666666666665 34666666665555443 3466
Q ss_pred HHHHHHHHHhHHhcCCCCC
Q 041942 387 EEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~ 405 (498)
+++..+++++.+ .++.|+
T Consensus 335 ~~a~~~~~~~~~-~~~~~~ 352 (389)
T PRK11788 335 KESLLLLRDLVG-EQLKRK 352 (389)
T ss_pred hhHHHHHHHHHH-HHHhCC
Confidence 666666666665 444444
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=3e-18 Score=175.42 Aligned_cols=386 Identities=8% Similarity=-0.061 Sum_probs=189.8
Q ss_pred hhhccCCChHHHHHhcccCCC---CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhh
Q 041942 47 GSVVIPGAINYAHKMFVKITE---PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 123 (498)
+... .|+.++|++++....+ .+...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|+.++
T Consensus 24 ia~~-~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALW-AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4444 5666666666665542 223345556666666666666666666655531 2334445555555566666666
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 041942 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMPV- 199 (498)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 199 (498)
|...++++.+.. +.+.. +..+..++...|+.++|...+++..+ .+...+..+...+...+..+.|+..++....
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 666666666542 22333 55555566666666666666655433 1223334444455555555555555554442
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHH-----hCCCh---HHHHHHHHHHHhC-CCCCCHH-
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV-----LCGMN---KQALEMFEEMRSV-GERPDDV- 269 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~- 269 (498)
|+. ...+ . ......++.... ..+++ ++|+..++.+.+. ...|+..
T Consensus 180 p~~--~~~l-~----------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 180 PAE--KRDL-E----------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHH--HHHH-H----------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 110 0000 0 000011111111 11122 4455555555432 1122111
Q ss_pred HHH----HHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------hhHH
Q 041942 270 TML----SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD-------VSTW 338 (498)
Q Consensus 270 ~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 338 (498)
.+. ..+..+...|++++|+..|+.+.......|+.. ...+...|...|++++|...|+++.+.+ ....
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 110 012233344555666665544333221112211 1113445555666666666655543211 1223
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC
Q 041942 339 STLIGGLAFHGFAEESIAMFREMQRLK-----------VRPT---EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404 (498)
Q Consensus 339 ~~l~~~~~~~~~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 404 (498)
..+..++...|++++|..+++++.... -.|+ ...+..+...+...|++++|+++++++....+-.+
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~ 393 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ 393 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 344445556666666666666655531 0112 12333444556666666666666666655211111
Q ss_pred C-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 405 N-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 405 ~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
. ...+...|++++|+..++++++++|+++..+..++..+...|++++|+.+++++.+.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 1 333446666777777777777777777777777777777777777777777777654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.3e-17 Score=170.73 Aligned_cols=389 Identities=8% Similarity=-0.036 Sum_probs=230.4
Q ss_pred HHHHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCC
Q 041942 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQN 85 (498)
Q Consensus 9 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~ 85 (498)
..+..-.|+...|.+++....... +.+...+..+.. .+.. .|++++|.++|+... +.+...+..+...+...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~-~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAV-AYRN-LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH-HHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 345556678888888888877632 333334566665 7788 999999999999964 4556778888889999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhcc
Q 041942 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 86 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
+++|+..+++..+.. +.+.. +..+..++...|+.+.|...++++.+.. +.+...+..+..++...|..+.|.+.++.
T Consensus 99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 999999999998763 44555 8888888899999999999999999975 34566777788889999999999999987
Q ss_pred CCCCCcch--------HHHHHHHHHh-----cCCh---HHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHh
Q 041942 166 DAKMDVVA--------WSSLTAGYAR-----RGEL---SMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFN 226 (498)
Q Consensus 166 ~~~~~~~~--------~~~l~~~~~~-----~~~~---~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 226 (498)
... ++.. ...++..... .+++ ++|+..++.+. +.++.......
T Consensus 176 ~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~----------------- 237 (765)
T PRK10049 176 ANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ----------------- 237 (765)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH-----------------
Confidence 765 2211 1111111111 1112 33444444333 11111000000
Q ss_pred hCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc--c
Q 041942 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA--K 303 (498)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 303 (498)
......+..+...|++++|...|+.+.+.+.+ |+. ....+...+...|++++|...|++.+......+ .
T Consensus 238 -------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 238 -------RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred -------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 00000112223445555555555555544321 211 111123445555555555555533332221110 0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---------------C---hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDR---------------D---VSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 365 (498)
......+..++...|++++|..+++.+.+. + ...+..+...+...|+.++|++.++++...
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~- 388 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN- 388 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 122233344445555555555555544321 1 123445556666777777777777777663
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCc
Q 041942 366 VRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 366 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
.| +...+..+...+...|++++|++.++++.+ +.|+ ...+...|++++|+..++++++..|+++.
T Consensus 389 -~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~---l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 389 -APGNQGLRIDYASVLQARGWPRAAENELKKAEV---LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 34 355666666677777777777777777766 4455 22333667777777777777777777763
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.4e-17 Score=167.58 Aligned_cols=377 Identities=14% Similarity=0.013 Sum_probs=268.1
Q ss_pred hhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhH
Q 041942 47 GSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 124 (498)
.+-+ .|++++|.+.|+... .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|
T Consensus 136 ~~~~-~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 136 KAYR-NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHHH-cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 4555 799999999999876 7788888889999999999999999999998753 33566888888889999999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCC-----------------------------CCCc---c
Q 041942 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-----------------------------KMDV---V 172 (498)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------------------------~~~~---~ 172 (498)
...+......+...+.. ...++..+........+...++.-. +.+. .
T Consensus 214 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 88777665443211111 1111111111111111222211110 0000 1
Q ss_pred hHHHHHHHH---HhcCChHHHHHHHhcCCC-----C-CcchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHH
Q 041942 173 AWSSLTAGY---ARRGELSMARSLFDEMPV-----R-DLVSWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSWNAMI 240 (498)
Q Consensus 173 ~~~~l~~~~---~~~~~~~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~ 240 (498)
.+..+...+ ...+++++|...|++... | ....|..+...+...|++++|...|++..+ | +...|..+.
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la 372 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRA 372 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 111111111 224678899999987762 2 345678888888999999999999998864 3 345788888
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCH
Q 041942 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (498)
..+...|++++|...|++..+.. +.+..++..+...+...|++++|...|++.+...+ .+...+..+...+.+.|++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P--~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP--DFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc--cCHHHHHHHHHHHHHCCCH
Confidence 88999999999999999988764 34577888888999999999999999976665442 3456667788889999999
Q ss_pred HHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HH------HHHHHHHHHhhcCCHHHH
Q 041942 321 ERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--EI------TFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 321 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~------~~~~l~~~~~~~g~~~~a 389 (498)
++|+..|++..+ .+...|+.+...+...|++++|++.|++.... .|+ .. .++.....+...|++++|
T Consensus 450 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 999999987753 35778899999999999999999999998874 332 11 122222334456999999
Q ss_pred HHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCc
Q 041942 390 KKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 390 ~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
.+++++... +.|+ ...|...|++++|...|+++.++.+....
T Consensus 528 ~~~~~kAl~---l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 528 ENLCEKALI---IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHh---cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 999999877 4555 33444899999999999999988776444
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=2.9e-18 Score=171.94 Aligned_cols=339 Identities=8% Similarity=0.001 Sum_probs=260.7
Q ss_pred hhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHH
Q 041942 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYA 182 (498)
Q Consensus 106 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 182 (498)
.-...++..+.+.|+++.|..+++..+..... +...+..++.+....|++++|...|+++.. .+...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34556677788999999999999999987533 455566666777789999999999997654 35567888888999
Q ss_pred hcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHH
Q 041942 183 RRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSWNAMISGYVLCGMNKQALEMF 256 (498)
Q Consensus 183 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~ 256 (498)
+.|++++|...++++. +.+...+..+..++...|+.++|...++.+.. | +...+..+ ..+...|++++|...+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999999887 44566888889999999999999999987642 3 33334333 3478889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHH----HHHHHhcCCC
Q 041942 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER----AIEVFLGMRD 332 (498)
Q Consensus 257 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~ 332 (498)
+.+.+....++...+..+..++...|++++|...+++.+... +.+...+..+...+...|++++ |...|++..+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 998876534445555566778889999999999997666544 3456666778899999999886 7888887763
Q ss_pred --C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC---
Q 041942 333 --R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--- 405 (498)
Q Consensus 333 --~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--- 405 (498)
| +...+..+...+...|++++|+..+++..+ ..|+ ...+..+..++.+.|++++|...++.+....+-.+.
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 3 567888999999999999999999999988 4465 566777788899999999999999998873222222
Q ss_pred --hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 406 --IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 406 --~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
...+...|+.++|...|+++++..|++. ...+++|...|.+..+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 2234588999999999999999988874 23445666666666554
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=3.1e-16 Score=161.00 Aligned_cols=432 Identities=11% Similarity=0.039 Sum_probs=259.5
Q ss_pred hchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHH
Q 041942 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLY 93 (498)
Q Consensus 16 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~ 93 (498)
|+...|...++...+....- ..++..+.. +|.. .|++++|+..+++.. .|+-..|..++..+ ++.++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~-~yl~-~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLAE-AYRH-FGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHH-HHHH-CCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 56666666666666653222 444444444 7777 777777777777765 34333333333222 6666666666
Q ss_pred HHHHhCC--------------------------------------CCCCHhhHHHH-HHHhhcccchhhHHHHHHHHHHh
Q 041942 94 TQMEKCS--------------------------------------IKPNKFTFSFV-LKACTRLLYRNMGFCVHGKIVKY 134 (498)
Q Consensus 94 ~~m~~~~--------------------------------------~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~ 134 (498)
+++.... ..|+..+.... .+.|.+.++++.+..++.++.+.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 6665532 11122222222 45555667777777777777776
Q ss_pred CCCCChHHHHHHHHHHHh-cCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC-----CCCcchHHH-
Q 041942 135 GFEFNRFVRNSLIYFHAN-CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-----VRDLVSWNV- 207 (498)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~- 207 (498)
+ +.+......|..+|.. .++ +++..+++...+.+...+..+...+.+.|+.++|.++++++. .|+..+|.-
T Consensus 212 ~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~ 289 (987)
T PRK09782 212 N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL 289 (987)
T ss_pred C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH
Confidence 5 3344445556666666 355 666666655444567777788888888899999988888887 122222211
Q ss_pred -----------------------------HHHHHHhcCChHHHHHHHhhCCC----------------------------
Q 041942 208 -----------------------------MITGYAKQGEMEKANELFNEVPK---------------------------- 230 (498)
Q Consensus 208 -----------------------------l~~~~~~~~~~~~A~~~~~~~~~---------------------------- 230 (498)
++..+.+.++++.++++...-..
T Consensus 290 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y 369 (987)
T PRK09782 290 LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLY 369 (987)
T ss_pred HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHH
Confidence 13334444444444443221110
Q ss_pred ---C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhC--------------------------------------------
Q 041942 231 ---R-DVVSWNAMISGYVLCGMNKQALEMFEEMRSV-------------------------------------------- 262 (498)
Q Consensus 231 ---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------------------------------------------- 262 (498)
| +......+.....+.|+.++|..+|+.....
T Consensus 370 ~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 370 QQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 0 1111111111222334444444444433320
Q ss_pred -------------------CC-CC--CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCH
Q 041942 263 -------------------GE-RP--DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 263 -------------------g~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (498)
+. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHHHHHHHCCCH
Confidence 01 11 23334444444433 55666666554444433 3322223344445678899
Q ss_pred HHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 321 ERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 321 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
++|...|+++.. ++...+..+...+.+.|++++|...+++..+.+ |+ ...+..+...+.+.|++++|...+++..
T Consensus 526 eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 526 ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999988887653 344556677778888999999999999988743 44 3333334445556699999999999987
Q ss_pred HhcCCCCChhHH-------HhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 398 DEYNIEPNIRHY-------GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 398 ~~~~~~p~~~~y-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+ ..|+...| .+.|++++|...++++++++|+++.++..++.++...|++++|+..+++..+...
T Consensus 604 ~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 604 N---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred H---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 7 56663333 3889999999999999999999999999999999999999999999999987543
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=6.3e-18 Score=169.49 Aligned_cols=366 Identities=11% Similarity=-0.032 Sum_probs=285.4
Q ss_pred CCChHHHHHhcccCC------CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHH
Q 041942 52 PGAINYAHKMFVKIT------EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 125 (498)
..+++...-.|...+ ..+..-...++..+.+.|++++|+.+++...... +-+...+..++.++...|+++.|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHH
Confidence 566666666666554 1223334556777889999999999999998864 334455666667777899999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CC
Q 041942 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP--VR 200 (498)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~ 200 (498)
..++++.+.. +.+...+..+...+...|++++|...|++... .+...+..+...+...|++++|...++.+. .|
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 9999999875 44677888999999999999999999987654 356678889999999999999999998775 33
Q ss_pred C-cchHHHHHHHHHhcCChHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041942 201 D-LVSWNVMITGYAKQGEMEKANELFNEVPKR----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275 (498)
Q Consensus 201 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 275 (498)
+ ...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..+++..+.. +.+...+..+.
T Consensus 176 ~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg 253 (656)
T PRK15174 176 PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLG 253 (656)
T ss_pred CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3 3344333 3578899999999999987653 23344556778889999999999999999775 44677788889
Q ss_pred HHHhccCCchH----HHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhC
Q 041942 276 TACADLGDLEV----GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFH 348 (498)
Q Consensus 276 ~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 348 (498)
..+...|++++ |...+++.+... +.+...+..+...+.+.|++++|...+++..+ | +...+..+..++...
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 99999999986 788886666554 34567788899999999999999999988764 3 566788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHc
Q 041942 349 GFAEESIAMFREMQRLKVRPTEIT-FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLN 427 (498)
Q Consensus 349 ~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~ 427 (498)
|++++|+..++++... .|+... +..+..++...|+.++|...+++..+ ..|+.. ...+++|...+.++++
T Consensus 332 G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~---~~P~~~----~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 332 GQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ---ARASHL----PQSFEEGLLALDGQIS 402 (656)
T ss_pred CCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hChhhc----hhhHHHHHHHHHHHHH
Confidence 9999999999999984 566433 44456788999999999999999987 455532 3556788888888886
Q ss_pred cCCCC
Q 041942 428 MRKDE 432 (498)
Q Consensus 428 ~~~~~ 432 (498)
.-+..
T Consensus 403 ~~~~~ 407 (656)
T PRK15174 403 AVNLP 407 (656)
T ss_pred hcCCc
Confidence 55443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.1e-16 Score=161.00 Aligned_cols=419 Identities=11% Similarity=0.010 Sum_probs=299.0
Q ss_pred HHHHHHHHhhhhccCCChHHHHHhcccCC--CCCh--hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 041942 38 SALRELIYSGSVVIPGAINYAHKMFVKIT--EPDT--FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113 (498)
Q Consensus 38 ~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 113 (498)
..|...| ...+ .|+++.|+..|++.. .|+. ..+ .++..+...|+.++|+..+++.... -+........+..
T Consensus 36 ~~y~~ai--i~~r-~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ 110 (822)
T PRK14574 36 TQYDSLI--IRAR-AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAAR 110 (822)
T ss_pred HHHHHHH--HHHh-CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence 3344445 3456 899999999999987 4443 234 8888888899999999999998721 1122222333355
Q ss_pred HhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHh--cCChHHHH
Q 041942 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR--RGELSMAR 191 (498)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~ 191 (498)
.+...|+++.|.++++++.+.. +-++..+..++..+...++.++|++.+++..+.++.....++.++.. .++..+|+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHH
Confidence 6778899999999999999875 33567777888999999999999999998887555443334444444 55665699
Q ss_pred HHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC-ChhhHHH----HHHHHH---------hCCC---hHH
Q 041942 192 SLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPKR-DVVSWNA----MISGYV---------LCGM---NKQ 251 (498)
Q Consensus 192 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~----l~~~~~---------~~g~---~~~ 251 (498)
..++++. +.+...+..+..+..+.|-...|.++..+-..- +...+.. .+.-.+ ...+ .+.
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 9999988 445677788889999999999999888876531 1111000 011111 1122 244
Q ss_pred HHHHHHHHHhC-CCCCCH-HH----HHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHH
Q 041942 252 ALEMFEEMRSV-GERPDD-VT----MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325 (498)
Q Consensus 252 a~~~~~~m~~~-g~~p~~-~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (498)
|+.-++.+... +-.|.. .. ..--+.++...|+..++++.| +.+...+.+....+-.++.++|...+++++|..
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y-~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEY-EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH-HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 55556665542 222322 22 223455678889999999999 666666655455566789999999999999999
Q ss_pred HHhcCCCC---------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHhh
Q 041942 326 VFLGMRDR---------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV-----------RPT---EITFVGVLVACSH 382 (498)
Q Consensus 326 ~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~l~~~~~~ 382 (498)
+|+.+..+ +......|.-+|...+++++|..+++++.+.-. .|| ...+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99987542 222346788899999999999999999987311 122 2234455677888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHH
Q 041942 383 AGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (498)
.|++.+|++.++.+....+-++. ...+...|.+.+|+..++.+..++|++..+...++.++...|++.+|..+.+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999774333333 5566689999999999999999999999999999999999999999988887
Q ss_pred HhhhCC
Q 041942 458 LMDDSD 463 (498)
Q Consensus 458 ~m~~~~ 463 (498)
.+.+..
T Consensus 509 ~l~~~~ 514 (822)
T PRK14574 509 DVISRS 514 (822)
T ss_pred HHHhhC
Confidence 775543
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=1.1e-15 Score=153.75 Aligned_cols=413 Identities=8% Similarity=0.009 Sum_probs=305.8
Q ss_pred HhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHH---HHHHhccCChHHHH
Q 041942 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI---IRGSAQSQNPLDAV 90 (498)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~A~ 90 (498)
.-|+...|...+....+......+.++ .++. .+.. .|+.++|+..+++...|+...+..+ ...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~-l~~~-~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQ-IAGW-AGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHH-HHHH-cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345667777777777766433223344 7777 7888 8999999999999987755544443 34677789999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC--
Q 041942 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK-- 168 (498)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 168 (498)
++|+++.+.. +-+...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|.+.++++.+
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999998864 345677778888889999999999999999886 45556665555555556777679999998765
Q ss_pred C-CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchH--HHHHHHHHh---------cC---ChHHHHHHHhhCCC
Q 041942 169 M-DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSW--NVMITGYAK---------QG---EMEKANELFNEVPK 230 (498)
Q Consensus 169 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~--~~l~~~~~~---------~~---~~~~A~~~~~~~~~ 230 (498)
| +...+..+..++.+.|-...|.++..+-. .+...-+ ...+.-.++ .. -.+.|..-++.+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 3 55567888899999999999999888765 1111101 000111111 11 23444444444432
Q ss_pred -----CCh-----hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc-
Q 041942 231 -----RDV-----VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS- 299 (498)
Q Consensus 231 -----~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~- 299 (498)
|.. .+..-.+-++...|++.++++.|+.|...|.+....+-..+..+|...+++++|..+|.+.....+
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 221 122345677888999999999999999998776777889999999999999999999977666543
Q ss_pred ---CCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-------------C---hhHHHHHHHHHHhCCCHHHHHHHH
Q 041942 300 ---GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-------------D---VSTWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 300 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-------------~---~~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
..++......|..+|...+++++|..+++.+.+ | | ...+..++..+...|+..+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 123344356789999999999999999998874 1 1 123455778889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCC
Q 041942 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRK 430 (498)
Q Consensus 359 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~ 430 (498)
+++.... +-|......+...+...|.+.+|++.++.... +.|+ ..++...+++.+|..+.+.+++..|
T Consensus 440 e~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 440 EDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 9998842 33678888889999999999999999988766 5776 4455589999999999999999999
Q ss_pred CCCchH
Q 041942 431 DESGDY 436 (498)
Q Consensus 431 ~~~~~~ 436 (498)
+++.+-
T Consensus 516 e~~~~~ 521 (822)
T PRK14574 516 EDIPSQ 521 (822)
T ss_pred CchhHH
Confidence 998543
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=3.2e-14 Score=125.55 Aligned_cols=378 Identities=12% Similarity=0.100 Sum_probs=259.3
Q ss_pred HhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhc-cCCCh-------------------------HHHHHhcccCCC
Q 041942 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV-IPGAI-------------------------NYAHKMFVKITE 67 (498)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~-------------------------~~A~~~~~~~~~ 67 (498)
+.+..+++--+++.|.+.|...++.+-..|++ ..+- ...++ +-|. ++-+..+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~-LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~~P 204 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFR-LVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFETLP 204 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHH-HHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-HHHhhcC
Confidence 56777888899999999998888887777665 2221 01111 1122 3333345
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
.+..+|..+|.++++-...+.|.++|++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 677899999999999999999999999998888899999999999875433 2378999999999999999999999
Q ss_pred HHHHhcCChhHHHHhhc----c----CCCCCcchHHHHHHHHHhcCChHH-HHHHHhcCC------------CCCcchHH
Q 041942 148 YFHANCGDLNTASVLFD----G----DAKMDVVAWSSLTAGYARRGELSM-ARSLFDEMP------------VRDLVSWN 206 (498)
Q Consensus 148 ~~~~~~g~~~~A~~~~~----~----~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~------------~~~~~~~~ 206 (498)
++..+.|+++.|.+.+- + +.+|...+|..+|..+++.++..+ |..++.++. +.|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999999988766553 3 346899999999999999988755 344444333 34556788
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041942 207 VMITGYAKQGEMEKANELFNEVPK--------RD---VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275 (498)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 275 (498)
..+..|....+.+-|..+-.-+.. ++ ..-|..+..+.++....+..+..|+.|+..-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 888999999999999888766552 12 2345667788888899999999999999888889999999999
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC-C--------HHH-----HHHHHh-------cCCC--
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG-S--------IER-----AIEVFL-------GMRD-- 332 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--------~~~-----A~~~~~-------~~~~-- 332 (498)
.+....+.++-..+++ .-+...|.........-++..+++.. + +.. |..+++ ++.+
T Consensus 441 rA~~v~~~~e~ipRiw-~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIW-KDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHhhcCcchhHHHHH-HHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 9999999999999988 44444443222222222222222211 0 000 111111 1111
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV----RPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
-.....+..+-.+.+.|+.++|.+++.-..+.+- .|.-....-++..-.+..+...|..+++.+..
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1334555555566666666666666666644321 22233333445555555666666666666644
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.7e-14 Score=136.64 Aligned_cols=261 Identities=15% Similarity=0.098 Sum_probs=164.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-------CCh------hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 041942 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPK-------RDV------VSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265 (498)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 265 (498)
.+.+...|.+...+...|+++.|...|+.... ++. .+-..+...+-..++++.|.+.|+.+.+. .
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--h 526 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--H 526 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--C
Confidence 34445555556666666666666666655442 111 11222444444555666666666666654 2
Q ss_pred CCH-HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhHHH
Q 041942 266 PDD-VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-----DRDVSTWS 339 (498)
Q Consensus 266 p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~ 339 (498)
|+- ..|..+.......+...+|...++..+......|++. +.+...+.+...+..|.+-|..+. .+|+.+.-
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar--sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR--SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH--HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 332 2233333222334566667666656655554444443 335556666666666666444332 13545545
Q ss_pred HHHHHHHh------------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--
Q 041942 340 TLIGGLAF------------HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-- 405 (498)
Q Consensus 340 ~l~~~~~~------------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-- 405 (498)
.|...|.+ .+..++|+++|.+.++.. +-|...-+.+...++..|++..|..+|.++++...-.+|
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~ 683 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVW 683 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCcee
Confidence 55554443 235678889998888843 335677777888888999999999999999884332444
Q ss_pred ---hhHHHhhCChHHHHHHHHHHHccC--CCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 406 ---IRHYGVHGDVELGRLANKRLLNMR--KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 406 ---~~~y~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+..|..+|++..|.++|+..+... .+++.+...|+.++.+.|.+.+|.+.+...+...+
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 677889999999999999998643 34678899999999999999999998887765443
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=6.9e-14 Score=135.53 Aligned_cols=393 Identities=12% Similarity=0.038 Sum_probs=219.9
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK--PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRN 144 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 144 (498)
..|+++.+.|...|.-.|++..++.+...+...... .-...|-.+.+++-..|+++.|...|.+..+....--...+.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 445556666666666666666666666666543211 112335555666666666666666666655543211123334
Q ss_pred HHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcC----ChHHHHHHHhcCC---CCCcchHHHHHHHHHh
Q 041942 145 SLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRG----ELSMARSLFDEMP---VRDLVSWNVMITGYAK 214 (498)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 214 (498)
.|..+|.+.|+++.+...|+.+.+ .+..+...+...|...+ ..+.|..++.+.. +.|...|..+...+-.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 566666666666666666665443 23334444444444443 3455555555554 3344455555444433
Q ss_pred cCC------hHHHHHHHhhCC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHH
Q 041942 215 QGE------MEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV---GERPDD------VTMLSLLTAC 278 (498)
Q Consensus 215 ~~~------~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~li~~~ 278 (498)
..- +..|..++.... ...+...|.+...+...|++.+|...|+..... -..++. .+-..+...+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 322 222332222221 234456666666667777777777777666533 112222 1222334444
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHH
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
-..++.+.|...|...+..++.- +..|-.+..+....+...+|...+....+ .|+..++.+...|.....+..|.
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~Y--Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGY--IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchh--HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 55567777777775555544321 11222222222234566677777665543 46667777777777777777777
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHhh------------cCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCC
Q 041942 356 AMFREMQRLK-VRPTEITFVGVLVACSH------------AGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGD 414 (498)
Q Consensus 356 ~~~~~m~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~ 414 (498)
+-|....+.- ..+|..+...|.+.|.+ .+..++|+++|+++.+ ..|. .......|+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccC
Confidence 7665554421 12455555555554432 2346677777777766 3443 333447788
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+.+|..+|.++.+--.+.+.+|..++.+|+.+|+|..|+++|+...++-.
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888876667778888888888888888888888888766544
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.2e-13 Score=120.39 Aligned_cols=319 Identities=14% Similarity=0.137 Sum_probs=233.5
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcc--cchh-hHHHHHHHHHHhCCCCChHHHHH
Q 041942 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL--LYRN-MGFCVHGKIVKYGFEFNRFVRNS 145 (498)
Q Consensus 69 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--~~~~-~a~~~~~~~~~~~~~~~~~~~~~ 145 (498)
.+.+=|.|+.. ...|.++++.-+|+.|.+.|++.+...-..|++..+-. .+.. .-++.|-.|...| +.+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 34566777665 45789999999999999999888888776666653322 2222 2244455555554 2233333
Q ss_pred HHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHH
Q 041942 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKA 221 (498)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A 221 (498)
+.|++.+ ++-+..+++..++.+||.++|+--..+.|.+++.+.. +.+..+||.+|.+-.-..+-+-.
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv 261 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLV 261 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHH
Confidence 3455444 5556667788899999999999999999999999887 56777889888775554443333
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhCCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHH-HHHHHHHHH
Q 041942 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQ----ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG-KKVHCTLLD 296 (498)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~ 296 (498)
-+....-..||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+. ..++.+.+.
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 333333346999999999999999998765 567889999999999999999999999998887553 333323322
Q ss_pred h---h----cCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--------CC---hhHHHHHHHHHHhCCCHHHHHHHH
Q 041942 297 M---T----SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--------RD---VSTWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 297 ~---~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
. . ..+.|...|..-+..|....+.+-|..+-.-+.. ++ ..-|..+....++....+.-..+|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1123455667778888888999888887665542 11 234566777888888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 359 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
+.|+-.-+-|+..+...++++..-.|.++-..++|..++. +|
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~g 463 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YG 463 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hh
Confidence 9999887889999999999999999999999998888877 55
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=1.7e-12 Score=120.70 Aligned_cols=418 Identities=12% Similarity=0.081 Sum_probs=229.9
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHH----HHhCCCCCCHhhHHHHHHHhhcccchhhH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQ----MEKCSIKPNKFTFSFVLKACTRLLYRNMG 124 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~~~~~li~~~~~~~~~~~a 124 (498)
..-++.|..++.... +.+...|.+-...=-++|+.+...+++.+ +...|+..+...|..=...|-+.|..-.+
T Consensus 419 LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 334555555544443 44455555444444455555555555443 23345555555555555555555555555
Q ss_pred HHHHHHHHHhCCCC--ChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC-
Q 041942 125 FCVHGKIVKYGFEF--NRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP- 198 (498)
Q Consensus 125 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 198 (498)
..+....+..|+.- -..+|+.-...|.+.+-++-|..+|....+ .+...|......--..|..+....+|++..
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555432 233555555555555555555555554333 233334444444444455555555555554
Q ss_pred --CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 041942 199 --VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273 (498)
Q Consensus 199 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 273 (498)
+.....|......+...|++..|..++..+.+ .+...|-+-+..-....+++.|..+|.+.... .|+...|.-
T Consensus 579 ~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mK 656 (913)
T KOG0495|consen 579 QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMK 656 (913)
T ss_pred hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHH
Confidence 22333444444455555555555555555443 13334555555555555555555555555432 344444444
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCC
Q 041942 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGF 350 (498)
Q Consensus 274 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 350 (498)
-+....-.++.++|.+++++.++.... -...|..+.+.+-+.++++.|.+.|..=.+ | .+..|-.|...=.+.|+
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp~--f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFPD--FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCCc--hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 444444455555555555444433321 223444455555555555555555543332 2 23344444444445555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc------------------------------
Q 041942 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY------------------------------ 400 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------------------------ 400 (498)
.-+|..++++..-.+ +-+...|...++.-.+.|+.+.|..++.+..++.
T Consensus 735 ~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 735 LVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred hhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 555555555555433 2234455555555555555555555555444321
Q ss_pred CCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeEEEe
Q 041942 401 NIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475 (498)
Q Consensus 401 ~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 475 (498)
.-.|. ...|....+++.|+.-|++++..+|++..+|.-+-..+.++|.-++-.+++.+... .+|.-|..|+.+
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 11222 23333778899999999999999999999999999999999999999999988876 456678888776
Q ss_pred c
Q 041942 476 D 476 (498)
Q Consensus 476 ~ 476 (498)
.
T Consensus 892 S 892 (913)
T KOG0495|consen 892 S 892 (913)
T ss_pred h
Confidence 6
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.1e-13 Score=120.89 Aligned_cols=403 Identities=11% Similarity=0.092 Sum_probs=306.1
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHhhcccchhhHHHH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF-TFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~ 127 (498)
++++..|.++|++.. ..+...|-..+..=.++..+..|..+++..... -|-+. .|---+..=-..|+...|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 678889999999987 667778888999999999999999999999874 44433 333333344566999999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhcc--CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC------C
Q 041942 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG--DAKMDVVAWSSLTAGYARRGELSMARSLFDEMP------V 199 (498)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~ 199 (498)
|+...+ ..|+...|++.++.-.+...++.|..+++. +..|++.+|-.....-.+.|+...|..+|+... .
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 999987 589999999999999999999999999997 446899999999998999999999999998877 2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCC--C---ChhhHHHHHHHHHhCCChHHHHHH--------HHHHHhCCCCC
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPK--R---DVVSWNAMISGYVLCGMNKQALEM--------FEEMRSVGERP 266 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~--------~~~m~~~g~~p 266 (498)
.+...+.+....-.++..++.|.-+|+-..+ | ....|..+...=-+-|+.....+. |+.+++.+ +-
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence 2334566666666677888889888876654 2 233455555444455665544433 44455443 45
Q ss_pred CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHH--------HhcCCHHHHHHHHhcCCC---CCh
Q 041942 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY--------AKCGSIERAIEVFLGMRD---RDV 335 (498)
Q Consensus 267 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~A~~~~~~~~~---~~~ 335 (498)
|-.+|--.+..-...|+.+...++|+..+...+.......|...|..+ ....+.+.+.++|+...+ ...
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 667777778877888999999999977765544333333343333322 246788888888876553 233
Q ss_pred hH----HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 041942 336 ST----WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYG 410 (498)
Q Consensus 336 ~~----~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~ 410 (498)
.| |-.....-.++.+...|.+++...+. ..|...+|...|..-.+.+++|.+..++++.++ ..|. ..++.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~ 475 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENCYAWS 475 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHH
Confidence 34 44444555578899999999998875 789999999999999999999999999999988 6776 22222
Q ss_pred -------hhCChHHHHHHHHHHHccCCCCC--chHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 411 -------VHGDVELGRLANKRLLNMRKDES--GDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 411 -------~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|+.+.|+.+|+.+++....+. ..|...+..-...|.++.|..+|+++++..-
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 88999999999999997544332 5789999999999999999999999987643
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.3e-15 Score=137.83 Aligned_cols=248 Identities=15% Similarity=0.170 Sum_probs=105.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 041942 207 VMITGYAKQGEMEKANELFNEV-PK----RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281 (498)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~-~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 281 (498)
.+...+.+.|++++|.++++.. .. .+...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456666777777777777432 22 24455666666777778888888888888766522 45556666665 677
Q ss_pred CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhHHHHHHHHHHhCCCHHHHHH
Q 041942 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-----DRDVSTWSTLIGGLAFHGFAEESIA 356 (498)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~ 356 (498)
+++++|..++....+.. +++..+..++..+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|++
T Consensus 91 ~~~~~A~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD---GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc---cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888774444332 344555667777888888888888877643 2467788888999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCC
Q 041942 357 MFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRK 430 (498)
Q Consensus 357 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~ 430 (498)
.+++..+ ..|+ ......++..+...|+.+++.++++...+..+-.|. ...|...|+.++|...++++...+|
T Consensus 168 ~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999998 5575 777888999999999999999999988874344555 5556689999999999999999999
Q ss_pred CCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
+|+.+...++.++...|+.++|..++++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999988754
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.8e-12 Score=116.56 Aligned_cols=374 Identities=13% Similarity=0.037 Sum_probs=254.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCC-hHHHHHHHHHH
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN-KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN-RFVRNSLIYFH 150 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 150 (498)
+-...+-|.++|++++|++.|.+..+ ..|+ +..|.....+|...|+++.+.+.-.+.++. .|+ ...+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 44455678899999999999999998 4788 777888888899999999999988888875 344 44666677788
Q ss_pred HhcCChhHHHHhh------ccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcc------------------
Q 041942 151 ANCGDLNTASVLF------DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLV------------------ 203 (498)
Q Consensus 151 ~~~g~~~~A~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~------------------ 203 (498)
-..|++++|+.=. +.....+ ...++.-..+.--..++.+-+..-. -|+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s---~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNAS---IEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccch---hHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 8888888875421 1111100 0111111111111122222222111 11111
Q ss_pred -----hHHHHHHHHHh--cC---ChHHHHHHHhhCC-------CCC---------hhhHHHHHHHHHhCCChHHHHHHHH
Q 041942 204 -----SWNVMITGYAK--QG---EMEKANELFNEVP-------KRD---------VVSWNAMISGYVLCGMNKQALEMFE 257 (498)
Q Consensus 204 -----~~~~l~~~~~~--~~---~~~~A~~~~~~~~-------~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~ 257 (498)
....+..++.. .+ .+..|...+.+-. ..+ ..+.....-.+.-.|+.-.|..-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 11111111111 01 2222322222211 011 1122222233445688899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---C
Q 041942 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR---D 334 (498)
Q Consensus 258 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 334 (498)
..+.....++. .|..+...|....+.++....|.....-.+ .++.+|..-.+++.-.+++++|..-|++...- +
T Consensus 351 ~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp--~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 351 AAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP--ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred HHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC--CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence 99977544333 377777889999999999999955555444 34455556677777889999999999987753 5
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------hh
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-------IR 407 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~ 407 (498)
...|-.+..+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.++..++ +.|+ +.
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAA 503 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccch
Confidence 567777777788899999999999999885 555588999999999999999999999999987 4444 11
Q ss_pred HHH--------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 408 HYG--------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 408 ~y~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
.+. =.+++..|..+++++++++|..-.+|..|+....++|+.++|+++|++..
T Consensus 504 plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 504 PLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 23899999999999999999999999999999999999999999999864
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=4.7e-13 Score=128.96 Aligned_cols=312 Identities=16% Similarity=0.162 Sum_probs=215.6
Q ss_pred HHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHH
Q 041942 149 FHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKAN 222 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 222 (498)
.....|++++|.+++.++.+ .....|..|...|-..|+.+++...+-..- +.|...|..+.....+.|+++.|.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 33444777777777766554 344567777777777777777766554333 556667777777777778888888
Q ss_pred HHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCCchHHHHHHHHHH
Q 041942 223 ELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT----MLSLLTACADLGDLEVGKKVHCTLL 295 (498)
Q Consensus 223 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~~~~~~a~~~~~~~~ 295 (498)
-.|.++.+. +...+---+..|.+.|+...|+..|.++.....+.|..- ....++.+...++-+.|.+++....
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777653 333444456677777888888888888776643222222 2233455556666677777776666
Q ss_pred HhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC----C---------------------------ChhHHHHHHHH
Q 041942 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD----R---------------------------DVSTWSTLIGG 344 (498)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~---------------------------~~~~~~~l~~~ 344 (498)
...+...+...++.++..|.+...++.|......+.. + +...+ .+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 6555555666667777777777777777766544432 1 12221 22233
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC------hhHHHhhCChH
Q 041942 345 LAFHGFAEESIAMFREMQRLKVRPT--EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------IRHYGVHGDVE 416 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~y~~~g~~~ 416 (498)
+...+..+....+..-.....+.|+ ...|.-+..++.+.|++..|..++..+....+..-. ...|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4445555555555666666665553 667888999999999999999999999883332221 44555889999
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
+|...|++++.+.|++..+...|+..+.+.|++++|.+++..|..
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999863
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=1.5e-11 Score=118.88 Aligned_cols=342 Identities=13% Similarity=0.086 Sum_probs=217.1
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 128 (498)
.|++++|.+++.++. +.+...|..|...|-+.|+.+++...+-..-... +-|...|..+..-..+.|++++|.-+|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 488888888888876 4456778888888888888888887776554432 346677888888778888888888888
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCc----ch----HHHHHHHHHhcCChHHHHHHHhcCC--
Q 041942 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV----VA----WSSLTAGYARRGELSMARSLFDEMP-- 198 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~----~~~l~~~~~~~~~~~~A~~~~~~~~-- 198 (498)
.+.++.. +++...+-.-...|-+.|+...|..-|.++.+.++ .- -..+++.+...++-+.|.+.++...
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 8888875 44555555566778888888888877776554322 11 2233455666666677777777665
Q ss_pred ---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--------------------------CChhhHH----HHHHHHHh
Q 041942 199 ---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK--------------------------RDVVSWN----AMISGYVL 245 (498)
Q Consensus 199 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~----~l~~~~~~ 245 (498)
.-+...++.++..+.+...++.|......... ++..+|. .++-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 23445677777777777777777766554431 0111111 12233334
Q ss_pred CCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 246 CGMNKQALEMFEEMRSVGERP--DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
.+..+....+...+....+.| +...|.-+..++...|++..|..++ ..+......-+..+|-.+..+|...|..++|
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l-~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL-SPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH-HHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 444444444555555555333 4456777777777777777777777 4444444344466777777777777777777
Q ss_pred HHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 041942 324 IEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQR--------LKVRPTEITFVGVLVACSHAGKVEEGKKY 392 (498)
Q Consensus 324 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 392 (498)
...|+.+.. | +...--.|...+.+.|+.++|.+.+..+.. .+..|+..........+.+.|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 777777664 2 334444566667777777777777777432 23445555555555666666766654444
Q ss_pred HHHh
Q 041942 393 FKLM 396 (498)
Q Consensus 393 ~~~~ 396 (498)
...|
T Consensus 549 ~~~L 552 (895)
T KOG2076|consen 549 ASTL 552 (895)
T ss_pred HHHH
Confidence 4333
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=1.1e-12 Score=116.80 Aligned_cols=400 Identities=15% Similarity=0.067 Sum_probs=213.3
Q ss_pred hHHHHHHHHhhhhccCCChHHHHHhcccCC----CCChhhH-HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhh----
Q 041942 37 SSALRELIYSGSVVIPGAINYAHKMFVKIT----EPDTFMY-NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFT---- 107 (498)
Q Consensus 37 ~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---- 107 (498)
-.++..|.. -|.. ..-..+|+..++-+. .||.... -.+.+.+.+...+.+|+++|+..+..-...+..+
T Consensus 201 fsvl~nlaq-qy~~-ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 201 FSVLFNLAQ-QYEA-NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred HHHHHHHHH-Hhhh-hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 334444444 5555 566677777776665 4554332 2345567778888889988887766422222233
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC----------------CCc
Q 041942 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK----------------MDV 171 (498)
Q Consensus 108 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~ 171 (498)
.+.+--.+.+.|.++.|..-|+...+. .|+..+-..|+-++..-|+-++..+.|.++.. |+.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 233333467889999999998888875 57777666677777788888888888865432 122
Q ss_pred chHHH-----HHHHHHhcC--ChHHHHHHHhcCC----CCCcc---hH----------HH--------HHHHHHhcCChH
Q 041942 172 VAWSS-----LTAGYARRG--ELSMARSLFDEMP----VRDLV---SW----------NV--------MITGYAKQGEME 219 (498)
Q Consensus 172 ~~~~~-----l~~~~~~~~--~~~~A~~~~~~~~----~~~~~---~~----------~~--------l~~~~~~~~~~~ 219 (498)
...+. .+.-+-+.+ +.++++-.--++. .|+.. -| .- -...+.+.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 22221 222222222 1222222222222 22211 00 00 123467888899
Q ss_pred HHHHHHhhCCCCChhhHHH----H--HHHH----------------------------------HhCCChHHHHHHHHHH
Q 041942 220 KANELFNEVPKRDVVSWNA----M--ISGY----------------------------------VLCGMNKQALEMFEEM 259 (498)
Q Consensus 220 ~A~~~~~~~~~~~~~~~~~----l--~~~~----------------------------------~~~g~~~~a~~~~~~m 259 (498)
.|.++++-..+.|..+-.+ | +..+ ...|++++|.+.|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 8888887766533221111 1 1111 1234555555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChh
Q 041942 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVS 336 (498)
Q Consensus 260 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~ 336 (498)
....-.-....|++ .-.+-..|++++|...|-++.. -...+..+...+...|....+...|.+++.+.. ..|+.
T Consensus 517 l~ndasc~ealfni-glt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA 593 (840)
T ss_pred HcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH
Confidence 53321111112221 1123345555555555522211 112233344445555555556666666554443 23555
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCCh--------hH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI--------RH 408 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~ 408 (498)
...-|...|-+.|+-.+|.+.+-+--+- ++.+..+...|...|....-+++++.+|++..- +.|+. ..
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHHHHHHHHHH
Confidence 6666666666666666666554443331 333555666666666666666666666666543 56662 23
Q ss_pred HHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 409 YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 409 y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
+.+.|++++|...|+......|.|...+..|+..+...|
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 336677777777777777777777766666666666665
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.7e-13 Score=126.60 Aligned_cols=270 Identities=13% Similarity=0.093 Sum_probs=217.6
Q ss_pred cCChHHHHHHHhcCC--CCC-cchHHHHHHHHHhcCChHHHHHHHhhCCC------CChhhHHHHHHHHHhCCChHHHHH
Q 041942 184 RGELSMARSLFDEMP--VRD-LVSWNVMITGYAKQGEMEKANELFNEVPK------RDVVSWNAMISGYVLCGMNKQALE 254 (498)
Q Consensus 184 ~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~ 254 (498)
.-+..+|+..|..+. .++ ..+...+..+|...+++++|+++|+.+.+ .+...|...+..+-+ +-++.
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 346789999999855 333 45566778999999999999999999875 366788888877643 22333
Q ss_pred HHHH-HHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 041942 255 MFEE-MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333 (498)
Q Consensus 255 ~~~~-m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 333 (498)
.+-+ +... -+-.+.+|.++..+|+-+++.+.|++.|+..+.-. +-....|+.+..-+.....+|.|...|+.....
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 3322 2322 25577899999999999999999999995555422 225678888888888999999999999998887
Q ss_pred ChhHHH---HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----
Q 041942 334 DVSTWS---TLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---- 405 (498)
Q Consensus 334 ~~~~~~---~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---- 405 (498)
|+..|+ -+...|.++++++.|+-.|+++.+ +.|. .+....+...+-+.|+.|+|+++++++.. ++|.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~ 559 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLC 559 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchh
Confidence 766555 477889999999999999999998 6674 66777788889999999999999999977 4544
Q ss_pred ----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 406 ----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 406 ----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
+..+...+++++|...++++.++.|++..++..++..|.+.|+.+.|+.-|--|.+...+
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 334448899999999999999999999999999999999999999999999988876654
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=3.9e-12 Score=120.59 Aligned_cols=240 Identities=15% Similarity=0.071 Sum_probs=149.5
Q ss_pred hcccchhhHHHHHHHHHHhCCCCChHHHH--HHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHH
Q 041942 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRN--SLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMA 190 (498)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 190 (498)
.+.|+++.+.+.+.++.+. .|+..... .....+...|+++.|.+.++...+ .++.....+...|.+.|+|++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4445555555555555442 22222111 223444455555555555544332 2333444455555555555555
Q ss_pred HHHHhcCCC---CCc--------chHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHH
Q 041942 191 RSLFDEMPV---RDL--------VSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMF 256 (498)
Q Consensus 191 ~~~~~~~~~---~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 256 (498)
..++..+.+ .+. .+|..++.......+.+...++++.+.+ .++.....+...+...|+.++|..++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555541 111 1233333333444556666667766653 46777888888888999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC--CCC
Q 041942 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR--DRD 334 (498)
Q Consensus 257 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~ 334 (498)
++..+. +|+.... ++.+....++.+++.+..++..+..+ -|+....++...+.+.+++++|.+.|+... .|+
T Consensus 287 ~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P--~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 287 LDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG--DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 888774 4555322 33444456888888888866665554 445566778888999999999999998876 477
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
...|..+...+.+.|+.++|.+++++...
T Consensus 361 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 361 AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888899999999999999999988754
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=9.4e-12 Score=117.98 Aligned_cols=215 Identities=13% Similarity=0.013 Sum_probs=128.3
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcch------hhHHHHHHHH
Q 041942 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV------LHGNALIDMY 314 (498)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~ 314 (498)
..+...|++++|...++++.+.. +-+...+..+...|...|++++|..++..+.+.....+.. ..|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554443 2233444444445555555555555552222222111110 1112223323
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 041942 315 AKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391 (498)
Q Consensus 315 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 391 (498)
....+.+...++++.+.. .++.....+...+...|+.++|.+++++..+ ..|+.... ++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHH
Confidence 334445566666666643 3666777778888888888888888888777 34454322 2334445578888888
Q ss_pred HHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 392 YFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 392 ~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
..+...+.++-+|+ ...+.+.+++++|+..|+++++..|++ ..+..|+.++.+.|+.++|.++|++-..
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88887774444444 333347788888888888888887775 4577899999999999999999998754
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=4.7e-10 Score=104.81 Aligned_cols=420 Identities=10% Similarity=0.036 Sum_probs=246.7
Q ss_pred HHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 041942 23 QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC 99 (498)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 99 (498)
+++....++ ++.++..|...+. -.+.++|..++.+.. +.+...|. ++++..-++.|..++++.++.
T Consensus 367 RVlRKALe~-iP~sv~LWKaAVe------lE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 367 RVLRKALEH-IPRSVRLWKAAVE------LEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHHh------ccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 344444443 3444455554444 334455666666654 33333333 445555667777777777664
Q ss_pred CCCCCHhhHHHHHHHhhcccchhhHHHHHHHHH----HhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC------C
Q 041942 100 SIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV----KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK------M 169 (498)
Q Consensus 100 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~ 169 (498)
++.+...|.+....=-+.|+.+.+.+++.+-+ ..|+..+..-|..=...+-..|-.-.+..+...... .
T Consensus 436 -iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 436 -IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred -CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 56666777666655556677777766665443 356666666666666666666666655555543221 1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGY 243 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 243 (498)
-..+|..-...|.+.+.++-|..+|.... +.+...|......--..|..+.-..+|++... .....|-.....+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 22356666666777777777777766665 44455666666655666667777777766653 2344555555666
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
-..|++..|..++.+..+... -+...+...+........++.|+.+|.+... ..++..+|.--+...--.++.++|
T Consensus 595 w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHH
Confidence 666777777777777666542 2555666666666777777777777733322 334555555555555556677777
Q ss_pred HHHHhcCCC--CC-hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 324 IEVFLGMRD--RD-VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 324 ~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
.+++++..+ |+ ...|..+...+.+.++.+.|.+.|..-.+ ..|+ ...|..|...--+.|++..|..++++.+-
T Consensus 671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarl- 747 (913)
T KOG0495|consen 671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL- 747 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh-
Confidence 777765554 22 34566666677777777777766665444 3444 44455555555666677777777777655
Q ss_pred cCCCCChh--------HHHhhCChHHHHHHHHHHHccCCC------------------------------CCchHHHHHH
Q 041942 400 YNIEPNIR--------HYGVHGDVELGRLANKRLLNMRKD------------------------------ESGDYVLLSN 441 (498)
Q Consensus 400 ~~~~p~~~--------~y~~~g~~~~a~~~~~~~~~~~~~------------------------------~~~~~~~l~~ 441 (498)
-+|+.. +=.+.|+.+.|.....++++--|+ |+.+...++.
T Consensus 748 --kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 748 --KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred --cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 344411 112667777776666666654433 4445555666
Q ss_pred HHHhCCCchHHHHHHHHhhhCC
Q 041942 442 IYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.+....+++.|.+-|.+..+.+
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 6666666666666666665543
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=3.4e-12 Score=113.76 Aligned_cols=375 Identities=14% Similarity=0.117 Sum_probs=258.8
Q ss_pred hhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCCh------hhHHHHHHHHhccCChHHHH
Q 041942 19 RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDT------FMYNTIIRGSAQSQNPLDAV 90 (498)
Q Consensus 19 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~------~~~~~ll~~~~~~g~~~~A~ 90 (498)
..|...++.+.+...-|+...+..-|..++-+ ...+..|.+.++-.. .|++ ...+.+.-.+.+.|.++.|+
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~k-kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFK-KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeee-hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 35666777777777777777666655556777 788899998876554 3332 34555555688999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCC------------CChHHHHHH-----HHHHHhc
Q 041942 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE------------FNRFVRNSL-----IYFHANC 153 (498)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l-----~~~~~~~ 153 (498)
..|+...+. .|+..+-..|+-++.--|+.+...+.|.+|+..-.. |+....+.- +.-.-+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 999998774 688877666666667779999999999999764222 333333322 2222222
Q ss_pred CC--hhHH----HHhhccCCCCCcch-------------HHH--------HHHHHHhcCChHHHHHHHhcCCCCCcchHH
Q 041942 154 GD--LNTA----SVLFDGDAKMDVVA-------------WSS--------LTAGYARRGELSMARSLFDEMPVRDLVSWN 206 (498)
Q Consensus 154 g~--~~~A----~~~~~~~~~~~~~~-------------~~~--------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 206 (498)
+. .+++ .++..-+..|+-.. +.. -...+.+.|+++.|++++..+...|..+-.
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 21 1111 12222222232110 111 123477899999999998877633333221
Q ss_pred HH----------------------------------------HHHHHhcCChHHHHHHHhhCCCCChhhHHHHH---HHH
Q 041942 207 VM----------------------------------------ITGYAKQGEMEKANELFNEVPKRDVVSWNAMI---SGY 243 (498)
Q Consensus 207 ~l----------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~ 243 (498)
+. .......|++++|.+.+++....|..+-.+|. -.+
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~ 534 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA 534 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH
Confidence 11 00112457889999999988877766544443 346
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
-..|+.++|++.|-++... +..+..++..+...|....+...|++++.+. ..-++.|+.+.+.|...|-+.|+-..|
T Consensus 535 e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~--~slip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCCCHHHHHHHHHHhhcccchhhh
Confidence 6789999999999877532 1345667777888898999999999987222 234566788999999999999999999
Q ss_pred HHHHh-cCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hhcCCHHHHHHHHHHhHHh
Q 041942 324 IEVFL-GMR--DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC-SHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 324 ~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~ 399 (498)
....- ... .-|..+..-|...|....-+++++.+|++..- +.|+..-|..++..| .+.|++.+|.++++.+.++
T Consensus 612 fq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 612 FQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 88753 333 24788888899999999999999999999877 889999999888655 5689999999999999775
Q ss_pred cC
Q 041942 400 YN 401 (498)
Q Consensus 400 ~~ 401 (498)
++
T Consensus 690 fp 691 (840)
T KOG2003|consen 690 FP 691 (840)
T ss_pred Cc
Confidence 33
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=9.8e-11 Score=105.25 Aligned_cols=394 Identities=12% Similarity=0.065 Sum_probs=297.6
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHH
Q 041942 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIY 148 (498)
Q Consensus 69 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 148 (498)
+...|-.....=...+++..|..+|+..+... .-+...|.--+.+=.+......|..+++..+..- +.-...|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 44556555555667789999999999998754 4455667777777778889999999999998863 333456777777
Q ss_pred HHHhcCChhHHHHhhccCC--CCCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHH
Q 041942 149 FHANCGDLNTASVLFDGDA--KMDVVAWSSLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANEL 224 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 224 (498)
+--..|++..|.++|+... +|+...|.+.+..-.+...++.|..++++.. .|++.+|..-...-.+.|.+..|..+
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7778899999999999755 4899999999999999999999999999988 89999999999888999999999999
Q ss_pred HhhCCC--C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCchHHHHH------
Q 041942 225 FNEVPK--R----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD--DVTMLSLLTACADLGDLEVGKKV------ 290 (498)
Q Consensus 225 ~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~------ 290 (498)
|+...+ . +...+.+....=.++..++.|..+|+-.+..- +-+ ...|..+...--+-|+.......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 988774 1 23345555555566788899999998887652 222 33444444443445554443332
Q ss_pred --HHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC---hhHHHHHH--------HHHHhCCCHHHHH
Q 041942 291 --HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RD---VSTWSTLI--------GGLAFHGFAEESI 355 (498)
Q Consensus 291 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~l~--------~~~~~~~~~~~A~ 355 (498)
|+..+..+ +.|..+|--.+..-...|+.+...++|++... |. -..|...| -.=....+.+.+.
T Consensus 309 ~qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 22333333 35566677778888888999999999998763 21 11222222 1123467999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHH----hhcCCHHHHHHHHHHhHHhcCCCCChhHHH-------hhCChHHHHHHHH
Q 041942 356 AMFREMQRLKVRP-TEITFVGVLVAC----SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------VHGDVELGRLANK 423 (498)
Q Consensus 356 ~~~~~m~~~~~~p-~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-------~~g~~~~a~~~~~ 423 (498)
++|+..++ +-| ...||..+--.| +++.++..|.+++... .|.-|-...|. +.++++..+.+|+
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A---IG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA---IGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH---hccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999998 445 466776655444 5778999999999988 55777755554 8899999999999
Q ss_pred HHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeE
Q 041942 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472 (498)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 472 (498)
+.++-.|.+..+|...+..-...|+++.|..+|+-..++..-..|..-|
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 9999999999999999999999999999999999999887655555433
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=6.7e-14 Score=126.72 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
.+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|...+++.+...+ .+......++..
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P--~~~~~~~~l~~~ 189 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP--DDPDARNALAWL 189 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T--T-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 33344444444444444444444443221 122333444444444444444444444433333332 122233344444
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 041942 314 YAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 390 (498)
+...|+.+++.+++.... ..|+..+..+..+|...|++++|+.+|++..+.. +.|+.....+..++...|+.++|.
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 444444444443333322 2344455555566666666666666666665521 224555555666666666666666
Q ss_pred HHHHHhH
Q 041942 391 KYFKLMR 397 (498)
Q Consensus 391 ~~~~~~~ 397 (498)
++..++.
T Consensus 269 ~~~~~~~ 275 (280)
T PF13429_consen 269 RLRRQAL 275 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 6655543
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=2.9e-11 Score=115.32 Aligned_cols=274 Identities=10% Similarity=0.037 Sum_probs=158.2
Q ss_pred hcCChHHHHHHHhcCC--CCCc-chHHHHHHHHHhcCChHHHHHHHhhCCC--CCh--hhHHHHHHHHHhCCChHHHHHH
Q 041942 183 RRGELSMARSLFDEMP--VRDL-VSWNVMITGYAKQGEMEKANELFNEVPK--RDV--VSWNAMISGYVLCGMNKQALEM 255 (498)
Q Consensus 183 ~~~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~a~~~ 255 (498)
..|+++.|.+.+.+.. .|++ ..+-....+....|+.+.|.+.+.+..+ |+. .........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 3455555555554444 2222 2223334455555666666666655432 222 1222235555566666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh-------HHHHHHHHHhcCCHHHHHHHHh
Q 041942 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-------GNALIDMYAKCGSIERAIEVFL 328 (498)
Q Consensus 256 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~ 328 (498)
++.+.+.. +-+...+..+...+...|+++.|.+.+....+ .+..++... +..++..-......+...+.+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666553 22444555666666666666666666633332 222111111 1111111112223344455555
Q ss_pred cCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhhcCCHHHHHHHHHHhHHhcCC
Q 041942 329 GMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF---VGVLVACSHAGKVEEGKKYFKLMRDEYNI 402 (498)
Q Consensus 329 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 402 (498)
...+ .++..+..++..+...|++++|.+++++..+. .|+.... ..........++.+.+.+.++...+..+-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 5543 36777888888888888888888888888874 3443321 11122234457778888888887775555
Q ss_pred CC--C-----hhHHHhhCChHHHHHHHH--HHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 403 EP--N-----IRHYGVHGDVELGRLANK--RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 403 ~p--~-----~~~y~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
+| . ...+.+.|++++|.+.|+ .+.+..|++ ..+..++..+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 2 112228888888888888 466666655 4477999999999999999999998643
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=2e-11 Score=116.48 Aligned_cols=276 Identities=14% Similarity=0.061 Sum_probs=140.7
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHhh-HHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHH
Q 041942 82 QSQNPLDAVFLYTQMEKCSIKPNKFT-FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160 (498)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 160 (498)
..|+++.|.+.+.+..+. .|+... +-....+..+.|+.+.+.+.+.+..+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456777777766665543 343332 23334445566677777777766655432222223333456666666666666
Q ss_pred HhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHH--------HHHHHHHhcCChHHHHHHHh
Q 041942 161 VLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWN--------VMITGYAKQGEMEKANELFN 226 (498)
Q Consensus 161 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~--------~l~~~~~~~~~~~~A~~~~~ 226 (498)
..++.+.+ .+......+...+.+.|+++.|.+.+..+. ..+...+. .++..-......+...+.+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66665443 244455566666666666666666666655 22222221 11111111222334444444
Q ss_pred hCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHhccCCchHHHHHHHHHHHhhcC
Q 041942 227 EVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM---LSLLTACADLGDLEVGKKVHCTLLDMTSG 300 (498)
Q Consensus 227 ~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 300 (498)
...+ .+...+..+...+...|+.++|..++++..+.. ||.... ..........++.+.+.+.++...+..+.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 4442 366677777777788888888888887777653 333210 11111122335555565555444444433
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHhc--C--CCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 301 VAKVLHGNALIDMYAKCGSIERAIEVFLG--M--RDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
.|+.....++...+.+.|++++|.+.|+. . ..|+...+..+...+.+.|+.++|.++|++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33223334455555555555555555552 2 1344444445555555555555555555543
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.3e-10 Score=104.13 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=209.6
Q ss_pred HhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCC------cchHHHHHHHHHhcCCh
Q 041942 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD------VVAWSSLTAGYARRGEL 187 (498)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 187 (498)
++-.....+++.+-.+.....|++.+...-+....+.-...|+++|+.+|+++.+.| ..+|..++- .+..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhH
Confidence 344445677777777777777877666666666777777888999999998877643 345554442 222221
Q ss_pred H---HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 041942 188 S---MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMFEEMRS 261 (498)
Q Consensus 188 ~---~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 261 (498)
. .|..++. ..+--+.|.-.+.+-|+-.++.++|...|++..+- ....|+.+.+-|....+...|.+-|+..++
T Consensus 314 kLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 314 KLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 1 1222221 11334456666777788888899999999888763 346788888889999999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHH
Q 041942 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTW 338 (498)
Q Consensus 262 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 338 (498)
-. +.|-..|-.+.++|.-.+...-|.-+|++...-. +.|...|.+|.++|.+.++.++|.+.|.+... .+...+
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 64 5577888888999988888888888885555433 46788888999999999999999998887653 345788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC----C-CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhh
Q 041942 339 STLIGGLAFHGFAEESIAMFREMQRL----K-VRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH 412 (498)
Q Consensus 339 ~~l~~~~~~~~~~~~A~~~~~~m~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~ 412 (498)
..|...|-+.++..+|...|++-++. | +.| .......|..-+.+.+++++|......... | .+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--~-~~-------- 538 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK--G-ET-------- 538 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc--C-Cc--------
Confidence 88889999889999988888876552 3 223 133334456777888888888887776655 1 22
Q ss_pred CChHHHHHHHHHHHcc
Q 041942 413 GDVELGRLANKRLLNM 428 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~ 428 (498)
..++|..+++++...
T Consensus 539 -e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 539 -ECEEAKALLREIRKI 553 (559)
T ss_pred -hHHHHHHHHHHHHHh
Confidence 356777777776643
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=4.2e-12 Score=118.79 Aligned_cols=270 Identities=11% Similarity=0.038 Sum_probs=177.2
Q ss_pred chhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC------CCcchHHHHHHHHHhcCChHHHHHH
Q 041942 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK------MDVVAWSSLTAGYARRGELSMARSL 193 (498)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~ 193 (498)
+..+|...|..+.+. +.-+..+...+..+|...+++++|+++|+.+.+ .+...|.+.+.-+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456677777774333 333446667788888888888888888876544 3556677766544332221111111
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH-
Q 041942 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV- 269 (498)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~- 269 (498)
+-.+.+..+.+|-++.++|.-+++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+ ..|..
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rh 488 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRH 488 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchh
Confidence 11222556778888888888888888888888887753 45677777777778888888888888776 33333
Q ss_pred --HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 041942 270 --TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGG 344 (498)
Q Consensus 270 --~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 344 (498)
.|.-+...|.+.++++.|.-.|++.+.-+ +.+.+....+...+.+.|+.++|+.++++... .|+..--..+..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 34445666778888888888774444333 23444445566677777778888888776552 355555555666
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 345 LAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+...+++++|+..++++++ +.|+ ...+..+...|-+.|+.+.|..-|.-+..
T Consensus 567 l~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 6667778888888888777 5665 34455555777777777777777766644
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=4.1e-11 Score=102.55 Aligned_cols=286 Identities=14% Similarity=0.168 Sum_probs=139.8
Q ss_pred cCChhHHHHhhccCCCCCcchHH---HHHHHHHhcCChHHHHHHHhcCC-CCCcc------hHHHHHHHHHhcCChHHHH
Q 041942 153 CGDLNTASVLFDGDAKMDVVAWS---SLTAGYARRGELSMARSLFDEMP-VRDLV------SWNVMITGYAKQGEMEKAN 222 (498)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~-~~~~~------~~~~l~~~~~~~~~~~~A~ 222 (498)
+.+.++|...|-+|.+.|+.++. +|.+.|-+.|..+.|+++-..+. .||.. ....|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45566666666666655544433 45556666666666666666555 33322 1223344455556666666
Q ss_pred HHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCCchHHHHHHHHHH
Q 041942 223 ELFNEVPKRD---VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV----TMLSLLTACADLGDLEVGKKVHCTLL 295 (498)
Q Consensus 223 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~ 295 (498)
.+|..+.+.. ......|+..|....+|++|+++-+++.+.+-.+... .|..+...+....+++.|...+.+..
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 6666555421 2344555666666666666666666555544333221 22233333333344444444443333
Q ss_pred HhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041942 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375 (498)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 375 (498)
.... ..+..--.+.+.+...|+++.|++.|+...+.+..--..+...
T Consensus 208 qa~~---------------------------------~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 208 QADK---------------------------------KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred hhCc---------------------------------cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 3221 1222223344445555555555555555555332222344445
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--hhHHH---hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC--CC
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYG---VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR--GE 448 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~ 448 (498)
|..+|...|+.++....+..+.+ ....++ ...|. ...-.+.|...+.+-+...|+-...+..+-.-+... |+
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~-~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAME-TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH-ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 55555555555555555555544 122222 11111 222333444444444444444333333333333333 56
Q ss_pred chHHHHHHHHhhhCCCccCCceeE
Q 041942 449 WNRVEKVRKLMDDSDIKKQPGCSL 472 (498)
Q Consensus 449 ~~~A~~~~~~m~~~~~~~~~~~~~ 472 (498)
+.+.+.+++.|....+...|.+..
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCCcee
Confidence 888899999998776665555533
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=1.1e-10 Score=112.60 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC----CCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 041942 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT----EPDTFMYNTIIRGSAQSQNPLDAVFLYTQME 97 (498)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 97 (498)
..++..+...|+.|+.++|..+|. -|+. .|+++.|- +|..|. .-+...|+.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLia-rYc~-~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIA-RYCT-KGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHH-HHcc-cCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 468889999999999999999999 8888 99999998 888887 345668999999998888887766
Q ss_pred hCCCCCCHhhHHHHHHHhhcccchhhH
Q 041942 98 KCSIKPNKFTFSFVLKACTRLLYRNMG 124 (498)
Q Consensus 98 ~~~~~p~~~~~~~li~~~~~~~~~~~a 124 (498)
.|...||..|..+|.+.||...-
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~f 102 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILF 102 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHH
Confidence 68899999999999999987763
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=1.9e-10 Score=101.49 Aligned_cols=273 Identities=15% Similarity=0.067 Sum_probs=179.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHh
Q 041942 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162 (498)
Q Consensus 83 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 162 (498)
.|++..|.++..+-.+.+-.| ...|....++.-+.|+.+.+-.++.+..+.--.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888876665332 3345556666777788888888888887754456667777777788888888888776
Q ss_pred hcc---CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCC-----------CcchHHHHHHHHHhcCChHHHHHHHhhC
Q 041942 163 FDG---DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR-----------DLVSWNVMITGYAKQGEMEKANELFNEV 228 (498)
Q Consensus 163 ~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (498)
++. +.+.++........+|.+.|++.....++..+.+. ...+|..+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 654 44456677777788888888888888888777611 1235666676666666666666677766
Q ss_pred CC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchh
Q 041942 229 PK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305 (498)
Q Consensus 229 ~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (498)
.. .++..-..++.-+.+.|+.++|.++.++..+.+..|.. ...-.+.+.++.+.-.+..++.....+..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 63 45666777888888889999999988888887666652 222345566777777766666666665544 4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMR--DRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 362 (498)
.+.+|...|.+.+.+.+|...|+... +++..+|+.+..+|.+.|+..+|.+..++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555555555555333 2444555555555555555555555554443
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.8e-10 Score=101.33 Aligned_cols=314 Identities=15% Similarity=0.109 Sum_probs=210.7
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCc-chHHHHHHHHHhc
Q 041942 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL-VSWNVMITGYAKQ 215 (498)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~ 215 (498)
..|...+-...-.+.+.|....|...|......-+..|.+.+....-..+.+.+..+...+...+. ..--.+..++-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 445444445555566667777777777665554444555544444333444444333322221111 1111233455555
Q ss_pred CChHHHHHHHhhCCC---CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCc-hHHH
Q 041942 216 GEMEKANELFNEVPK---RD-VVSWNAMISGYVLCGMNKQALEMFEEMRSVGE--RPDDVTMLSLLTACADLGDL-EVGK 288 (498)
Q Consensus 216 ~~~~~A~~~~~~~~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~-~~a~ 288 (498)
...+++..-...... ++ ...-+....+.-...++++|+.+|+++.+... --|..+|+.++-.-.....+ -.|.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 566666555444433 22 22223334445566788899999988887631 11556777666443222111 1122
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 041942 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365 (498)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 365 (498)
.++ .-. +..+.|..++.+.|+-.++.++|...|++..+- -...|+.+..-|...++...|++-|+++++
T Consensus 321 ~v~----~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 321 NVS----NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHH----Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 221 222 233445556778888899999999999988753 356899999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchH
Q 041942 366 VRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDY 436 (498)
Q Consensus 366 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~ 436 (498)
+.| |-..|-.|.++|.-.+...-|.-.|++..+ +.|+ ...|.+.++.++|.+.|.+++.....+..++
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 555 788999999999999999999999999977 7777 6777899999999999999998877788999
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 437 VLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
..|++.|-+.++.++|...|++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999888765
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=1.2e-09 Score=96.49 Aligned_cols=279 Identities=16% Similarity=0.126 Sum_probs=168.1
Q ss_pred cCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCCCC--C--cchHHHHHHHHHhcCChHHHHHHH
Q 041942 153 CGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMPVR--D--LVSWNVMITGYAKQGEMEKANELF 225 (498)
Q Consensus 153 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~A~~~~ 225 (498)
.|++..|++...+..+ .....|..-..+--+.|+.+.+-.++.+..++ | ...+.+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666544322 22223333344455555666665555555411 2 223334444455555555555544
Q ss_pred hhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc
Q 041942 226 NEVP---KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302 (498)
Q Consensus 226 ~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (498)
.++. ..++........+|.+.|++.....++..|.+.|.--+...- + .
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~------------l 227 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R------------L 227 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H------------H
Confidence 4433 234445555555555555555555555555555433222110 0 0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 379 (498)
...+|..+++-....+..+.-...++.... .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ......
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 012333444444444444444455665553 3566667777888888888888888888888777666 223345
Q ss_pred HhhcCCHHHHHHHHHHhHHhcCCCCCh-----hHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 380 CSHAGKVEEGKKYFKLMRDEYNIEPNI-----RHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
+.+-++...-++..++..+.++..|+. ..|.+.+.+.+|..+|+.++...|+ ...|..++.++.+.|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 677788888888887777767778873 3334888888888888888876654 5779999999999999999999
Q ss_pred HHHHhhhCCCc
Q 041942 455 VRKLMDDSDIK 465 (498)
Q Consensus 455 ~~~~m~~~~~~ 465 (498)
++++....-..
T Consensus 383 ~r~e~L~~~~~ 393 (400)
T COG3071 383 VRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHhcC
Confidence 99988744333
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=4e-10 Score=96.60 Aligned_cols=285 Identities=13% Similarity=0.042 Sum_probs=149.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCCh------HHHHHHHHHHHhcCCh
Q 041942 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR------FVRNSLIYFHANCGDL 156 (498)
Q Consensus 83 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 156 (498)
+.+.++|+++|-+|.+.. +-+..+..+|-+-|-+.|..+.|.++.+.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 345666666666665521 223344445555555566666666666665542 221 1223444455555555
Q ss_pred hHHHHhhccCCCCCc---chHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 041942 157 NTASVLFDGDAKMDV---VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233 (498)
Q Consensus 157 ~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 233 (498)
|.|+.+|..+.+.+. .....|+..|-...+|++|++.-+++.+.+..+|+.-| .
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-----------------------A 180 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-----------------------A 180 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH-----------------------H
Confidence 555555555444221 22334444555555555555544443322222222111 1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
..|--+...+....+++.|..++.+..+.. +-....-..+.......|+++.|.+.+ +.+.+.+...-..+...|..+
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~-e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEAL-ERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHH-HHHHHhChHHHHHHHHHHHHH
Confidence 233444455555566666666666666543 111222223445556667777777776 333334333344455667777
Q ss_pred HHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc---CCHHH
Q 041942 314 YAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA---GKVEE 388 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~ 388 (498)
|.+.|+.++....+.++.+ ++...-..+...-......+.|..++.+-+. -+|+...+..++..-... |...+
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhh
Confidence 7777777777777766553 3444555555555555666667666666555 368888888887665432 33455
Q ss_pred HHHHHHHhHH
Q 041942 389 GKKYFKLMRD 398 (498)
Q Consensus 389 a~~~~~~~~~ 398 (498)
-...+..|+.
T Consensus 337 sL~~lr~mvg 346 (389)
T COG2956 337 SLDLLRDMVG 346 (389)
T ss_pred hHHHHHHHHH
Confidence 5555555544
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.5e-12 Score=82.90 Aligned_cols=50 Identities=30% Similarity=0.622 Sum_probs=46.3
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc
Q 041942 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 117 (498)
||+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998874
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=8.2e-08 Score=90.09 Aligned_cols=245 Identities=13% Similarity=0.173 Sum_probs=149.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCCCChh-------hHHHHHHHHHhCCChHHHHHHHHHHHhC-----------CC
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVV-------SWNAMISGYVLCGMNKQALEMFEEMRSV-----------GE 264 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----------g~ 264 (498)
..|..+...|-..|+++.|..+|++..+-+-. +|-.....=.++.+++.|+.+++..... +.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 36778888888899999999999888763332 3444444445667778888877765421 11
Q ss_pred CCC------HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC----CC
Q 041942 265 RPD------DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD----RD 334 (498)
Q Consensus 265 ~p~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~ 334 (498)
++. ...|...+..--..|-++....+|+.++.-.-..|-... ...-.+....-++++.+++++-.. |+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 222 234444555555667888888888666665554443322 122223345557788888876553 34
Q ss_pred h-hHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhhcCCHHHHHHHHHHhHHh---------
Q 041942 335 V-STWSTLIGGLAF---HGFAEESIAMFREMQRLKVRPTEITFVGVLV--ACSHAGKVEEGKKYFKLMRDE--------- 399 (498)
Q Consensus 335 ~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~--------- 399 (498)
+ ..|+..+.-+.+ ....+.|..+|++..+ |.+|...-+-.|+. .--+.|-...|..+++++...
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~m 624 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3 356665554443 2367888888888887 55554322222222 222346666666666665431
Q ss_pred -----------cCCCCChhHHH-----------------------hhCChHHHHHHHHHHHccCCC--CCchHHHHHHHH
Q 041942 400 -----------YNIEPNIRHYG-----------------------VHGDVELGRLANKRLLNMRKD--ESGDYVLLSNIY 443 (498)
Q Consensus 400 -----------~~~~p~~~~y~-----------------------~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~ 443 (498)
+|+..+...|. +.|.+++|+.+|.-..++-++ ++..|.+.-..-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 12222211111 889999999999998886554 557899999999
Q ss_pred HhCCCch
Q 041942 444 ASRGEWN 450 (498)
Q Consensus 444 ~~~g~~~ 450 (498)
.++|+-+
T Consensus 705 vrHGned 711 (835)
T KOG2047|consen 705 VRHGNED 711 (835)
T ss_pred HhcCCHH
Confidence 9999833
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.1e-10 Score=98.31 Aligned_cols=223 Identities=14% Similarity=0.114 Sum_probs=188.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHH
Q 041942 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315 (498)
Q Consensus 236 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (498)
-+.+..+|.+.|.+.+|...++...+. .|-+.||..|-.+|.+..+...|..++.+-+... +.++....-+...+.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHH
Confidence 356889999999999999999988877 6677788889999999999999999996655444 345555556777788
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 392 (498)
..++.++|.++++.+.+ .|+....++...|.-.++++-|+.+|+++...|+ -++..|+.+.-+|.-.+++|-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 88999999999998775 3666777788889999999999999999999985 6788899999999999999999999
Q ss_pred HHHhHHhcCCCCC--hhHHH-------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 393 FKLMRDEYNIEPN--IRHYG-------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 393 ~~~~~~~~~~~p~--~~~y~-------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
|++... .-.+|+ .+.|- ..|++.-|.+.|+.++..++++..+++.|+-.-.+.|++++|..+++......
T Consensus 381 f~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999887 455566 23332 78999999999999999999999999999999999999999999999987654
Q ss_pred C
Q 041942 464 I 464 (498)
Q Consensus 464 ~ 464 (498)
.
T Consensus 460 P 460 (478)
T KOG1129|consen 460 P 460 (478)
T ss_pred c
Confidence 3
No 56
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.9e-08 Score=93.38 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=95.5
Q ss_pred CHHHHHHHHhcCCCC----ChhHHHHHHHHHHhCCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhhcCCH
Q 041942 319 SIERAIEVFLGMRDR----DVSTWSTLIGGLAFHGFAEESIAMFR--------EMQRLKVRPTEITFVGVLVACSHAGKV 386 (498)
Q Consensus 319 ~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~ 386 (498)
....|.+++....+. ...+.-.++......|+++.|++++. ...+.+. .+.+...++..+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCC
Confidence 456666666655532 23456667777888999999999998 5555333 345666677777777777
Q ss_pred HHHHHHHHHhHHhcC----CCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 387 EEGKKYFKLMRDEYN----IEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~----~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
+.|..++.+.+.-.. ..+. +..-.+.|+.++|.+.++++++.+|+|..+...++.+|.+. +++.|+.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 777777766654110 1111 11111789999999999999999999999999999999865 4666766
Q ss_pred HHHHh
Q 041942 455 VRKLM 459 (498)
Q Consensus 455 ~~~~m 459 (498)
+-+.+
T Consensus 513 l~k~L 517 (652)
T KOG2376|consen 513 LSKKL 517 (652)
T ss_pred HhhcC
Confidence 65543
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=9.3e-10 Score=96.99 Aligned_cols=193 Identities=14% Similarity=0.106 Sum_probs=122.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 280 (498)
.+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 344445555555555555555554432 234455666666666777777777776666553 2344555566666667
Q ss_pred cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHH
Q 041942 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
.|++++|...+++.+...........+..+...+...|++++|...+.+..+ .+...+..+...+...|++++|...
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777755544322223334455566677777777777777766543 2455677777888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 358 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 192 LERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888775 233456666677777788888888887777654
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.4e-11 Score=78.35 Aligned_cols=50 Identities=38% Similarity=0.652 Sum_probs=48.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 041942 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280 (498)
Q Consensus 231 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 280 (498)
||+.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=9.2e-09 Score=93.26 Aligned_cols=367 Identities=11% Similarity=0.058 Sum_probs=220.5
Q ss_pred CCChHHHHHhcccCC--CCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHhhcccchhhHHHH
Q 041942 52 PGAINYAHKMFVKIT--EPD-TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF-TFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~ 127 (498)
.|.+++|.+.+.+.. .|+ ++.|......|...|+++.+.+.-.+.++ +.|+.. .+..-.+++-..|++.+++.=
T Consensus 128 ~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 799999999999987 777 78888899999999999999988888776 456532 344444455556666665432
Q ss_pred HHHHHH-hCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcc-----------------------hHHHHHHH
Q 041942 128 HGKIVK-YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVV-----------------------AWSSLTAG 180 (498)
Q Consensus 128 ~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-----------------------~~~~l~~~ 180 (498)
+.-..- .|+. +..+- .++.-..+.--...+.+-+.+-.+ |++. ....+..+
T Consensus 206 ~tv~ci~~~F~-n~s~~-~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 206 VTVLCILEGFQ-NASIE-PMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred hhHHHHhhhcc-cchhH-HHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 221111 1111 11100 011111111111122222221111 1111 11111111
Q ss_pred HHh--cC---ChHHHHHHHhcCC-----CC-----Ccc------hHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhH
Q 041942 181 YAR--RG---ELSMARSLFDEMP-----VR-----DLV------SWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSW 236 (498)
Q Consensus 181 ~~~--~~---~~~~A~~~~~~~~-----~~-----~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~ 236 (498)
+.. .+ .+.+|...+.+-. .+ |.. +.......+.-.|+.-.|...|+.... | +...|
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~ly 363 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLY 363 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHH
Confidence 110 11 2333333332221 11 111 111111223456777788888887764 2 33337
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (498)
-.+...|....+.++.+..|.+..... +-++.+|..-.+...-.+++++|..=|++...-. +.++..|..+.-+..+
T Consensus 364 I~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 364 IKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHH
Confidence 777788889999999999999888765 3456667777777777788888888885554433 2345556666666778
Q ss_pred cCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-------HHHHH--HHHHHHhhcC
Q 041942 317 CGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-------EITFV--GVLVACSHAG 384 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-------~~~~~--~l~~~~~~~g 384 (498)
.+++++++..|++..+ | .+..|+.....+..++++++|.+.|+..++ +.|. ..++. .++. +.=.+
T Consensus 441 ~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~-~qwk~ 517 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLV-LQWKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhh-hchhh
Confidence 8899999999988875 3 567899999999999999999999999887 4444 11111 1111 11237
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hhHHH-------hhCChHHHHHHHHHHHccCCC
Q 041942 385 KVEEGKKYFKLMRDEYNIEPN-IRHYG-------VHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~p~-~~~y~-------~~g~~~~a~~~~~~~~~~~~~ 431 (498)
++..|.+++.+..+ +.|. ...|. ..|+.++|..+|++...+-..
T Consensus 518 d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 518 DINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 88999999998877 6666 22222 888999999999998865444
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=1.6e-09 Score=95.52 Aligned_cols=196 Identities=13% Similarity=0.116 Sum_probs=117.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.+...+ .+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Confidence 3456666777777777777777777776543 23445556666666777777777777754444332 22334445555
Q ss_pred HHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCH
Q 041942 313 MYAKCGSIERAIEVFLGMRD-----RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKV 386 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 386 (498)
.+...|++++|...+++... .....+..+...+...|++++|...+++..+. .| +...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCH
Confidence 56666666666666655432 12234444555555566666666666555552 22 233444444445555555
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 387 EEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
++|...++ ++++..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLE-----------------------------RYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHH-----------------------------HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 55555544 444445666777788889999999999999998887653
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=1.2e-09 Score=105.62 Aligned_cols=269 Identities=14% Similarity=0.151 Sum_probs=152.2
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCC
Q 041942 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170 (498)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (498)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|.-...+.+..+++.++..+...++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667777888888888888888888888888887 8888887777778888888888888888877765 677
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-C-ChhhHHHHHHHHHhCCC
Q 041942 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK-R-DVVSWNAMISGYVLCGM 248 (498)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~g~ 248 (498)
+.+|..|..+|.+.|+... .+..++ ....+...+...|....-..++..+.- | ....-...+......|.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~egl 154 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGL 154 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHH
Confidence 7888888888888887654 111111 112233344444444444444433221 1 11111223333344455
Q ss_pred hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 041942 249 NKQALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (498)
++.+++++..+-... ..|..+ ++.-+.. ...-.+++. .+.+.....++..++.++++.-..+|+.+.|..++
T Consensus 155 waqllkll~~~Pvsa~~~p~~v----fLrqnv~--~ntpvekLl-~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQV----FLRQNVV--DNTPVEKLL-NMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHH----HHHHhcc--CCchHHHHH-HHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 555555554433211 011111 1222211 122233333 23332222456666666666666666666666666
Q ss_pred hcCCCC----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 328 LGMRDR----DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 328 ~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
.+|.+. +..-|..|+.+ .++..-+..+++-|.+.|+.|+..|+...+..+.+.|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 666643 22233333333 56666666667777777777777777666666655443
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.1e-08 Score=94.42 Aligned_cols=60 Identities=8% Similarity=-0.007 Sum_probs=43.5
Q ss_pred CCcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHHH
Q 041942 33 FNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLYT 94 (498)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 94 (498)
+.-|+...--+.+ ++.- .|.++.|..+...-. ..|..+.......+.+..++++|+.++.
T Consensus 45 l~~dp~d~~~~aq-~l~~-~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 45 LTNDPADIYWLAQ-VLYL-GRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred ccCChHHHHHHHH-HHHh-hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444555 4444 678888887776554 7788888888888899999999999888
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.25 E-value=5e-08 Score=91.64 Aligned_cols=344 Identities=13% Similarity=0.032 Sum_probs=184.1
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 128 (498)
-|+.++|....+... ..+.++|+.+.-.+-...++++|++.|......+ +-|...|.-|.---++.++++......
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 577788887777766 4456678877777777778888888888777653 345556655554455666666666666
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCC-----CCCcchHHHH------HHHHHhcCChHHHHHHHhcC
Q 041942 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-----KMDVVAWSSL------TAGYARRGELSMARSLFDEM 197 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~ 197 (498)
....+.. +.....|..+..++.-.|+...|..+++... .++...+... .....+.|..++|++-+..-
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 6665542 2344456666666666677766666654322 1333322221 12334455556665555544
Q ss_pred C--CCCcc-hHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHH-HHHHhCCC-----------------------
Q 041942 198 P--VRDLV-SWNVMITGYAKQGEMEKANELFNEVPK--RDVVSWNAMI-SGYVLCGM----------------------- 248 (498)
Q Consensus 198 ~--~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~-~~~~~~g~----------------------- 248 (498)
. ..|-. .-..-...+.+.+++++|..++..+.. ||...|+... .++..-.+
T Consensus 212 e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 212 EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 3 11111 112234445566666666666665554 3333333222 22211111
Q ss_pred ------------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHH---HHHHHHhhc----------CCcc
Q 041942 249 ------------NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV---HCTLLDMTS----------GVAK 303 (498)
Q Consensus 249 ------------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~---~~~~~~~~~----------~~~~ 303 (498)
.+..-.++..+.+.|+++-- ..+...|-.-...+-..++ +...+...+ .+|.
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt 368 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPT 368 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCch
Confidence 12222334444455544322 2222222111111111111 111111111 1333
Q ss_pred hhhH--HHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041942 304 VLHG--NALIDMYAKCGSIERAIEVFLGMRDRDVS---TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378 (498)
Q Consensus 304 ~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 378 (498)
...| -.++..|-+.|+++.|...++......+. .|..=.+.+...|+.++|..++++..+.+ .||...-..-..
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAK 447 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHH
Confidence 3333 34566777788888888888777765443 34444567777788888888888877754 355554446666
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCC
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNI 402 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~ 402 (498)
...++.+.++|.++.....+ .|.
T Consensus 448 YmLrAn~i~eA~~~~skFTr-~~~ 470 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTR-EGF 470 (700)
T ss_pred HHHHccccHHHHHHHHHhhh-ccc
Confidence 67777888888888777766 443
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.23 E-value=7.1e-08 Score=92.70 Aligned_cols=399 Identities=15% Similarity=0.087 Sum_probs=234.9
Q ss_pred hhhccCCChHHHHHhcccCC--CCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHH-HHHHHhhcc----
Q 041942 47 GSVVIPGAINYAHKMFVKIT--EPD-TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFS-FVLKACTRL---- 118 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~---- 118 (498)
++.. .|++++|++.++... -+| ..........+.+.|+.++|..+|..+.+++ |+...|. .+..++...
T Consensus 13 il~e-~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEE-AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHH-CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 4556 899999999998765 344 4455667778889999999999999999874 5555544 444444222
Q ss_pred -cchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhH-HHHhhccCCCCCc-chHHHHHHHHHhcCChHHHHHHHh
Q 041942 119 -LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT-ASVLFDGDAKMDV-VAWSSLTAGYARRGELSMARSLFD 195 (498)
Q Consensus 119 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~ 195 (498)
.+.+....+++++...- |.......+.-.+..-..+.. +...+..+....+ .+|+.+-..|......+-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 24667778888776653 333333222222222222332 3333344444433 456666666665544444444444
Q ss_pred cCC------------------CCCcc--hHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChHHH
Q 041942 196 EMP------------------VRDLV--SWNVMITGYAKQGEMEKANELFNEVPK--RD-VVSWNAMISGYVLCGMNKQA 252 (498)
Q Consensus 196 ~~~------------------~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a 252 (498)
... +|+.. ++..+...|...|++++|.+++++..+ |+ +..|..-...+-+.|++.+|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 432 12222 345556777888888888888887765 33 44677778888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh--------HHHHHHHHHhcCCHHHHH
Q 041942 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH--------GNALIDMYAKCGSIERAI 324 (498)
Q Consensus 253 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~A~ 324 (498)
.+.++..+... .-|...=+-....+.+.|++++|..++ ......+..|.... ......+|.+.|++..|+
T Consensus 248 a~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~-~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 248 AEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTA-SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHH-HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88888888765 346666666777778888888888888 55555443332211 134566778888888888
Q ss_pred HHHhcCCCC---------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCC---------
Q 041942 325 EVFLGMRDR---------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGK--------- 385 (498)
Q Consensus 325 ~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~--------- 385 (498)
..|..+.+. |-.+| |.+.+-+..-+++++.--...-.|- ..+...+++.|.+.-+
T Consensus 326 k~~~~v~k~f~~~~~DQfDFH~Y------c~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~ 399 (517)
T PF12569_consen 326 KRFHAVLKHFDDFEEDQFDFHSY------CLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEE 399 (517)
T ss_pred HHHHHHHHHHHHHhcccccHHHH------HHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 776665431 33333 4455544433333332222111221 2233334444432110
Q ss_pred ---------HHHHHHHHHHhHH----------h------------------------cCCCCChhHHHhhC-ChHHHHHH
Q 041942 386 ---------VEEGKKYFKLMRD----------E------------------------YNIEPNIRHYGVHG-DVELGRLA 421 (498)
Q Consensus 386 ---------~~~a~~~~~~~~~----------~------------------------~~~~p~~~~y~~~g-~~~~a~~~ 421 (498)
..+..+.-++.++ . ..-.|......+.. =+++|.+.
T Consensus 400 ~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~~t~dPLe~A~kf 479 (517)
T PF12569_consen 400 QEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLLKTEDPLEEAMKF 479 (517)
T ss_pred cccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHHhcCCcHHHHHHHH
Confidence 0111111111110 0 00011122232333 46788899
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHH
Q 041942 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
++.+.+..|++..+|..-...|.+.|++--|++.+.+
T Consensus 480 l~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 480 LKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999999999999888887664
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=3.5e-09 Score=100.35 Aligned_cols=236 Identities=17% Similarity=0.206 Sum_probs=149.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC----------CChh-hHHHHHHHHHhCCChHHHHHHHHHHHhC-----CC-C
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPK----------RDVV-SWNAMISGYVLCGMNKQALEMFEEMRSV-----GE-R 265 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----g~-~ 265 (498)
.+...+...|...|+++.|+.+++...+ +.+. ..+.+...|...+++.+|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4555577788888888888888776653 1222 2334667788888888888888887632 21 2
Q ss_pred C-CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcC-----Ccc-hhhHHHHHHHHHhcCCHHHHHHHHhcCCC------
Q 041942 266 P-DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG-----VAK-VLHGNALIDMYAKCGSIERAIEVFLGMRD------ 332 (498)
Q Consensus 266 p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------ 332 (498)
| -..+++.|..+|.+.|++++|...++..+.-... .+. ...++.+...++..+++++|..+++...+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2345666777788888888887777554432211 111 12234455566667777777766654321
Q ss_pred -C-C---hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc
Q 041942 333 -R-D---VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KV--RPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400 (498)
Q Consensus 333 -~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 400 (498)
+ + ..+++.|...|...|++++|.+++++.+.. +- .+. ...++.+...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~-- 437 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD-- 437 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH--
Confidence 1 2 246777777777777777777777776542 11 222 34566666777777777777777766544
Q ss_pred CCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 401 NIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 401 ~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+....-.-.|+-..+|..|+.+|...|++++|+++.+...
T Consensus 438 --------------------i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 --------------------IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --------------------HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1111111123444689999999999999999999988775
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=4.8e-07 Score=85.13 Aligned_cols=399 Identities=15% Similarity=0.160 Sum_probs=211.7
Q ss_pred CCChHHHHHhcccCC-----CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHH
Q 041942 52 PGAINYAHKMFVKIT-----EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 126 (498)
+|++-.....|++.. ......|...+......|-++-++.+|++.++ +.| ..-.--|..++..+++++|.+
T Consensus 115 Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P--~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 115 QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAP--EAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCH--HHHHHHHHHHHhccchHHHHH
Confidence 555555555554443 12233455555555556666666666666654 222 224444555566666666666
Q ss_pred HHHHHHHhC------CCCChHHHHHHHHHHHhcCC---hhHHHHhhccCCCC--Cc--chHHHHHHHHHhcCChHHHHHH
Q 041942 127 VHGKIVKYG------FEFNRFVRNSLIYFHANCGD---LNTASVLFDGDAKM--DV--VAWSSLTAGYARRGELSMARSL 193 (498)
Q Consensus 127 ~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~--~~--~~~~~l~~~~~~~~~~~~A~~~ 193 (498)
.+...+... -+.+...|..+.+..++.-+ --...++++.+... |. ..|.+|...|.+.|.+++|..+
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDv 270 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDV 270 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 665554211 13344455544444444322 12233344444432 22 3477777788888888888888
Q ss_pred HhcCC--CCCcchHHHHHHHHHhcCC----------------------hHHHHHHHhhCCC---------------CChh
Q 041942 194 FDEMP--VRDLVSWNVMITGYAKQGE----------------------MEKANELFNEVPK---------------RDVV 234 (498)
Q Consensus 194 ~~~~~--~~~~~~~~~l~~~~~~~~~----------------------~~~A~~~~~~~~~---------------~~~~ 234 (498)
|++.. ..++..|..+.++|+.-.. ++-...-|+.+.. .++.
T Consensus 271 yeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~ 350 (835)
T KOG2047|consen 271 YEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVE 350 (835)
T ss_pred HHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHH
Confidence 87765 3344444444444432211 1222222222221 1222
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc---hh
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPD------DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK---VL 305 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 305 (498)
.|..-+.. ..|+..+....|.+.++. +.|. ...|..+...|-..|+++.|+.+|++..+ .+.+.- ..
T Consensus 351 eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~-V~y~~v~dLa~ 426 (835)
T KOG2047|consen 351 EWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK-VPYKTVEDLAE 426 (835)
T ss_pred HHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc-CCccchHHHHH
Confidence 33322222 235566666666666543 1221 23466667777778888888888844332 221111 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC-C--------------------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRD-R--------------------DVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 364 (498)
+|..-..+-.+..+++.|.++.+.... | +...|...+..-...|-++....+|+++++.
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444444555566777777777766541 1 3346666777666777777777888888775
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCCh-h---HHH-------hhCChHHHHHHHHHHHccCCCCC
Q 041942 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI-R---HYG-------VHGDVELGRLANKRLLNMRKDES 433 (498)
Q Consensus 365 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~---~y~-------~~g~~~~a~~~~~~~~~~~~~~~ 433 (498)
.+.- +.+......-+-...-++++.+++++-+.. ---|.+ + +|. ....++.|+.+|+++++.-|+..
T Consensus 507 riaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~L-Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~ 584 (835)
T KOG2047|consen 507 RIAT-PQIIINYAMFLEEHKYFEESFKAYERGISL-FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH 584 (835)
T ss_pred hcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCcc-CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Confidence 4422 222222222233444567777777766552 222331 1 111 23367888888888888776532
Q ss_pred --chHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 434 --GDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 434 --~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
..|..++..-.+.|....|+.+|++..
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355566666666788888888888753
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.18 E-value=1.9e-07 Score=89.57 Aligned_cols=122 Identities=13% Similarity=0.194 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hh
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IR 407 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~ 407 (498)
.|......+...+..++|...+.+... +.| ....|......+...|++++|.+.|..... +.|+ ..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 566777888889999999988888877 444 456666666778888999999999988866 7777 55
Q ss_pred HHHhhCChHHHHH--HHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 408 HYGVHGDVELGRL--ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 408 ~y~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.+.+.|+..-|.. ++..+++++|.++.+|..++..+-..|+.++|-+.|+-..+..
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 6668887777776 9999999999999999999999999999999999999987654
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=4.5e-09 Score=104.32 Aligned_cols=238 Identities=13% Similarity=0.053 Sum_probs=140.3
Q ss_pred ChHHHHHHHhhCCC--C-ChhhHHHHHHHHH---------hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 041942 217 EMEKANELFNEVPK--R-DVVSWNAMISGYV---------LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284 (498)
Q Consensus 217 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~---------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 284 (498)
.+++|...|++..+ | +...|..+..++. ..+++++|...+++..+.. +-+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 35667777776654 2 2234444443332 2234677777777777654 33555666666666777777
Q ss_pred hHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-VSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
++|...|++.+...+ .+...+..+...+...|++++|...+++..+ |+ ...+..++..+...|++++|...++++
T Consensus 355 ~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 777777755555442 2344455666777777777777777776653 32 223333444455567777777777777
Q ss_pred HHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCC
Q 041942 362 QRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 362 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~ 432 (498)
.+.. .|+ ...+..+..++...|+.++|...+.++.. ..|+ ...|...| ++|...++++++.....
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 6532 243 44455566667777777777777777654 3333 11222333 46666666665433332
Q ss_pred CchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+.....+...|.-.|+.+.+... +++.+.|.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 22233366667777887777777 88877665
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.2e-08 Score=94.25 Aligned_cols=265 Identities=14% Similarity=0.063 Sum_probs=182.6
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHH
Q 041942 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM---DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVM 208 (498)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 208 (498)
+..-+..+......-+...+++.+..++++...+. ....+..-|.++...|+..+-..+=.++. |..+.+|-++
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 34556666777777788888888888888776653 33345555667777777666666666665 5556788888
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCch
Q 041942 209 ITGYAKQGEMEKANELFNEVPKRD---VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285 (498)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 285 (498)
.--|.-.|+..+|.+.|.+...-| ...|-.....|.-.|..++|+..|...-+.= +-...-+.-+.--|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 888888888888888887766432 3577778888888888888888776655431 111111223344566778888
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC----------ChhHHHHHHHHHHhCCCHHHHH
Q 041942 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR----------DVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
.|.++|.+.+... +.|+.+.+-+.......+.+.+|..+|+....+ ...+++.|..+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 8888885554333 355666666766667777888888887765421 2345777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCCh
Q 041942 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406 (498)
Q Consensus 356 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 406 (498)
..+++.+... +-+..++.++.-.+...|+++.|.+.|.+... +.|+-
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~n 522 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPDN 522 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCcc
Confidence 8888887742 34677888888888888888888888887744 77773
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=1e-06 Score=83.15 Aligned_cols=414 Identities=12% Similarity=0.033 Sum_probs=268.6
Q ss_pred HHHHHHHHhhhhccCCChHHHHHhcccCC--CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 041942 38 SALRELIYSGSVVIPGAINYAHKMFVKIT--EP-DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114 (498)
Q Consensus 38 ~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 114 (498)
..|..++. .|. .+.+..-+++.+.+. .| ...+.....-.+...|+-++|......-.... .-+...|+.+.-.
T Consensus 9 ~lF~~~lk-~yE--~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALK-CYE--TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHH-HHH--HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHH
Confidence 44555565 555 255554444444443 11 22233333334567899999999888877643 3355667777666
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHH
Q 041942 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMAR 191 (498)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 191 (498)
+-...++++|.+.|..+.+.+ +.|...+..+.-.-...|+++.....-....+ .....|...+.+..-.|++..|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666789999999999999876 55788888887777888888887776665444 35567888888999999999999
Q ss_pred HHHhcCC-----CCCcchHHHH------HHHHHhcCChHHHHHHHhhCCCC--C-hhhHHHHHHHHHhCCChHHHHHHHH
Q 041942 192 SLFDEMP-----VRDLVSWNVM------ITGYAKQGEMEKANELFNEVPKR--D-VVSWNAMISGYVLCGMNKQALEMFE 257 (498)
Q Consensus 192 ~~~~~~~-----~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~ 257 (498)
.+++... .|+...|... .....+.|..++|.+.+...... | ...-......+.+.+++++|..++.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 9998876 3555555443 33456788889998888776642 2 2233455677889999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHh--ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHH-HHHhcCCCC-
Q 041942 258 EMRSVGERPDDVTMLSLLTACA--DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI-EVFLGMRDR- 333 (498)
Q Consensus 258 ~m~~~g~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~- 333 (498)
.++.. .||...|...+..+. -.+..+....+| ......-. ....-..+--......++.+.. .++..+.+.
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly-~~ls~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALY-AILSEKYP--RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHH-HHHhhcCc--ccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 99987 677777666555444 333344444666 33332211 1111111111111222233322 333333332
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQR----LK----------VRPTEITF--VGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~----------~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
-+.++..+...|-.-...+-..++...+.. .| -+|....| ..+...+-+.|+++.|..+++..+
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 345556666655443332222222222211 11 14454444 345678889999999999999986
Q ss_pred HhcCCCCC-hhHH-------HhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 398 DEYNIEPN-IRHY-------GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 398 ~~~~~~p~-~~~y-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
. -.|+ ++.| ...|++++|-..++++.+++-.|..+-..-+.-..++++.++|.++.....+.|.
T Consensus 399 d---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 D---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 6 6777 3333 4788999999999999999998887777888889999999999999999988876
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=7.8e-09 Score=93.89 Aligned_cols=210 Identities=13% Similarity=0.066 Sum_probs=115.3
Q ss_pred ChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHH
Q 041942 248 MNKQALEMFEEMRSVG-ERPD--DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (498)
..+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|++.+...+ .+...|+.+...+...|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP--DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence 3444555555555321 1111 23344445555666666666666644444332 33455556666666666666666
Q ss_pred HHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 325 EVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 325 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
..|++..+ | +..+|..+..++...|++++|++.+++..+ ..|+..........+...++.++|...+.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 66665543 2 345566666666667777777777777666 334432212222223345567777777755443 1
Q ss_pred CCCCh----hHHHhhCChHHHHHHHHHHH-------ccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 402 IEPNI----RHYGVHGDVELGRLANKRLL-------NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 402 ~~p~~----~~y~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|+. ..+...|+...+ ..++.+. ++.|..+.+|..++..+.+.|++++|+..|++..+.++
T Consensus 195 ~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22321 111234444332 2333332 34455667888888888888888888888888887665
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=1.8e-08 Score=100.05 Aligned_cols=203 Identities=15% Similarity=0.033 Sum_probs=102.7
Q ss_pred hhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCC
Q 041942 156 LNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVP 229 (498)
Q Consensus 156 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (498)
+++|...+++..+ .+...+..+...+...|++++|...|++.. +.+...+..+..++...|++++|...+++..
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555554332 234445555555566666666666666655 3334455556666666666666666666655
Q ss_pred C--CCh-hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh
Q 041942 230 K--RDV-VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306 (498)
Q Consensus 230 ~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (498)
+ |+. ..+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+.+.....+ .+...
T Consensus 400 ~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~--~~~~~ 477 (553)
T PRK12370 400 KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI--TGLIA 477 (553)
T ss_pred hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc--hhHHH
Confidence 3 221 122233334445666666776666665443121333445555556666777777766644322211 12223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 041942 307 GNALIDMYAKCGSIERAIEVFLGMRD-----RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365 (498)
Q Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 365 (498)
.+.+...|...| ++|...++.+.+ +....+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 344444555555 355555544432 111122 33334445555555554 6666543
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=4.1e-08 Score=93.19 Aligned_cols=231 Identities=19% Similarity=0.216 Sum_probs=134.3
Q ss_pred HHHHHHHHHHhcCChhHHHHhhccCC----------CCCcch-HHHHHHHHHhcCChHHHHHHHhcCC-------CCC--
Q 041942 142 VRNSLIYFHANCGDLNTASVLFDGDA----------KMDVVA-WSSLTAGYARRGELSMARSLFDEMP-------VRD-- 201 (498)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~-- 201 (498)
+...+...|...|+++.|..+++... .+...+ .+.+...|...+++++|..+|+++. -++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 33445555555555555555554211 112221 2345566777788888877776654 011
Q ss_pred --cchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CCH-HHHHHHHHH
Q 041942 202 --LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDD-VTMLSLLTA 277 (498)
Q Consensus 202 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~-~~~~~li~~ 277 (498)
..+++.|..+|.+.|++++|...+++.. ++++. ..|.. |.. ..++.+...
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al------------------------~I~~~--~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERAL------------------------EIYEK--LLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHH------------------------HHHHH--hhccChHHHHHHHHHHHHH
Confidence 1234444445555555555544443322 11111 01111 111 123444445
Q ss_pred HhccCCchHHHHHHHHHHHhhc--CC----cchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------ChhHHHH
Q 041942 278 CADLGDLEVGKKVHCTLLDMTS--GV----AKVLHGNALIDMYAKCGSIERAIEVFLGMRDR-----------DVSTWST 340 (498)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~ 340 (498)
|+..+++++|..+++..++... +. .-..+++.|...|.+.|++.+|+++++++.+. ....++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 5556666666665544433222 11 12456677888888888888888888776531 1346788
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQR----LKV-RPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~----~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|...|.+.+++.+|.++|.+... .|. .|+ ..+|..|...|.+.|+++.|.++.+.+..
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88899999999999988887543 232 233 57899999999999999999999988764
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=7.8e-07 Score=79.35 Aligned_cols=257 Identities=11% Similarity=-0.034 Sum_probs=123.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhh---HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041942 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS---WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275 (498)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 275 (498)
+.|......+..++...|+.++|...|++...-|+.+ .......+.+.|+.++...+...+.... .-+...|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 4455566666666666666666666666655433322 2222333445566666555555554221 11111222222
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC--CC-ChhHHHHHHHHHHhCCCHH
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR--DR-DVSTWSTLIGGLAFHGFAE 352 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~ 352 (498)
.......+++.|..+-++.+.... .+...+-.-...+...++.++|.-.|+... .| +..+|.-|+.+|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~--r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEP--RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCc--ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 233344555555555433332221 112222112233445566666666665443 22 5566666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-hcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHH
Q 041942 353 ESIAMFREMQRLKVRPTEITFVGVL-VACS-HAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLAN 422 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~ 422 (498)
+|..+-+...+. +..+..+...+. ..|. ...--++|..++++..+ ++|+ ++.....|..+++..++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 666555544432 223334433331 1111 12223455555555533 4555 22233556666666666
Q ss_pred HHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
++.+...|+ ....+.|++.+.-.+.+.+|++.|......+
T Consensus 462 e~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 462 EKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 666654443 3445566666666666666666555554433
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6.5e-07 Score=79.85 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhH-------HHhhCChHHHHHHH
Q 041942 351 AEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH-------YGVHGDVELGRLAN 422 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------y~~~g~~~~a~~~~ 422 (498)
-++|.+++++..+ +.|+ ....+.+...|...|....++.+++.... ..||... +.....+++|...|
T Consensus 420 rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 420 REKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4667777777666 5666 45666666777777778778877777755 5666333 33455667777778
Q ss_pred HHHHccCCCCCch
Q 041942 423 KRLLNMRKDESGD 435 (498)
Q Consensus 423 ~~~~~~~~~~~~~ 435 (498)
..++.++|.+..+
T Consensus 495 ~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 495 YKALRQDPKSKRT 507 (564)
T ss_pred HHHHhcCccchHH
Confidence 8888888887443
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=3.2e-09 Score=91.22 Aligned_cols=224 Identities=10% Similarity=0.038 Sum_probs=137.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhH-HHHHHHHHhCCCh
Q 041942 175 SSLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPK--RDVVSW-NAMISGYVLCGMN 249 (498)
Q Consensus 175 ~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~g~~ 249 (498)
+.+..+|.+.|.+.+|.+.|.... .|-+.||..|-.+|.+..+...|+.++.+..+ |..+|| .-+...+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 445666666666666666666554 55556666666666666666666666666554 333332 3344555556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhc
Q 041942 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329 (498)
Q Consensus 250 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (498)
++|.++|+...+.. +.+......+...|.-.++.+-|.++|+..+ +-|. .++..|..+.-+|.-.++++-++.-|++
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 66666666666543 3344444455555666666666666663333 3332 3445555666666666666666666654
Q ss_pred CC----CCC--hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCC
Q 041942 330 MR----DRD--VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403 (498)
Q Consensus 330 ~~----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 403 (498)
.. +++ ...|..+.......|++..|.+.|+-....+ ......++.|.-.-.+.|++++|..+++.... +.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s---~~ 459 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS---VM 459 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh---hC
Confidence 43 232 3467777777777788888888877776643 22356777777777778888888888877755 55
Q ss_pred CC
Q 041942 404 PN 405 (498)
Q Consensus 404 p~ 405 (498)
|+
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 55
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=3.6e-07 Score=79.83 Aligned_cols=374 Identities=10% Similarity=0.006 Sum_probs=200.8
Q ss_pred CCChHHHHHhcccCCCC---Ch-hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHH
Q 041942 52 PGAINYAHKMFVKITEP---DT-FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~~---~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 127 (498)
..++..|..+++.-... .. .+--.+...+.+.|++++|+..|+.+.+.. .|+...+..|.-+..-.|.+.+|..+
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 56777777777655411 11 111123344566788888888888776643 55666666665555556666666554
Q ss_pred HHHHHH--------------hC-----------CCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCc--chHHH-HHH
Q 041942 128 HGKIVK--------------YG-----------FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV--VAWSS-LTA 179 (498)
Q Consensus 128 ~~~~~~--------------~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~-l~~ 179 (498)
-....+ .+ +.....--.+|.++..-.-.+++|.+++.++...+. ...|. +.-
T Consensus 114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~AL 193 (557)
T KOG3785|consen 114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMAL 193 (557)
T ss_pred HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHH
Confidence 433211 11 011111222344444444557777777777665333 23333 334
Q ss_pred HHHhcCChHHHHHHHhcCC--CCCc-chHHHHHHHHHhc--CCh---------------------------------HHH
Q 041942 180 GYARRGELSMARSLFDEMP--VRDL-VSWNVMITGYAKQ--GEM---------------------------------EKA 221 (498)
Q Consensus 180 ~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~--~~~---------------------------------~~A 221 (498)
+|.+..-++-+.+++.... .||+ ...|..+....+. |+. +.|
T Consensus 194 CyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgA 273 (557)
T KOG3785|consen 194 CYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGA 273 (557)
T ss_pred HHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccH
Confidence 5666676776666666554 3333 3333332222221 111 112
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HhccCCchHHHHHHHHHHH
Q 041942 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA-----CADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~ 296 (498)
.+++-.+.+.=+.+.-.|+--|.+.+++++|..+.+++... .|-......+..+ ........-|.+.| ++..
T Consensus 274 LqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqff-qlVG 350 (557)
T KOG3785|consen 274 LQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFF-QLVG 350 (557)
T ss_pred HHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH-HHhc
Confidence 22211111111223334555677889999999888877522 3333333333322 22223456677777 6665
Q ss_pred hhcCCcchh-hHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 041942 297 MTSGVAKVL-HGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372 (498)
Q Consensus 297 ~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 372 (498)
..+...|.. --.++...+.-..++++++.++..+.. .|-..--.+..+++..|++.+|.++|-+.....++ |..+
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~ 429 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKIL 429 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHH
Confidence 555444322 224566666667788888888887764 23233334778888899999999999877664443 4455
Q ss_pred HH-HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCC
Q 041942 373 FV-GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 373 ~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~ 431 (498)
|. .|.++|.+.++++.|..++-++.. .+..-. +...-+++.+=-|-+.|+.+-.++|.
T Consensus 430 Y~s~LArCyi~nkkP~lAW~~~lk~~t-~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 430 YKSMLARCYIRNKKPQLAWDMMLKTNT-PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 54 455888999999888877654422 000000 11111566666666666666656654
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.6e-07 Score=86.50 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=76.7
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHhhcccchhhHHHH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN-KFTFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~ 127 (498)
.|+++.|...|-... ++|.+.|..=..+|+..|++.+|++=-.+-++ +.|+ ...|+-.-.++.-.|++++|..-
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 789999999987765 66788888888899999999998887777766 4554 55788888888888999999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHH
Q 041942 128 HGKIVKYGFEFNRFVRNSLIYFH 150 (498)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~ 150 (498)
|.+-++.. +.+...++.+..++
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhh
Confidence 98888764 44666777777777
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.2e-06 Score=76.70 Aligned_cols=372 Identities=10% Similarity=0.001 Sum_probs=206.8
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCh
Q 041942 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156 (498)
Q Consensus 77 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 156 (498)
+.-+....++..|+.+++.-...+-.-...+-.-+..++.+.|++++|...+..+.... .++...+..|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45567788999999999877654322222222334455678899999999999888754 66777777788888888999
Q ss_pred hHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChh
Q 041942 157 NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK--RDVV 234 (498)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~ 234 (498)
.+|..+-.+..+ ++..-..|+....+.++-++-..+-+.+.. ....-.+|.......-.+++|.+++.++.. |+..
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 999988776543 333344555556666666665555554431 112233444445555567888888888765 3334
Q ss_pred hHHHHH-HHHHhCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcc--CC---------------------------
Q 041942 235 SWNAMI-SGYVLCGMNKQALEMFEEMRSVGERPD-DVTMLSLLTACADL--GD--------------------------- 283 (498)
Q Consensus 235 ~~~~l~-~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~--~~--------------------------- 283 (498)
..|..+ -+|.+..-++-+.++++--.+. -|| ....+.......+. |+
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN 263 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN 263 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence 444433 4455666666666666655543 233 22222222222111 11
Q ss_pred ------chHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCC-------C
Q 041942 284 ------LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG-------F 350 (498)
Q Consensus 284 ------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-------~ 350 (498)
-+.|.+++-.++. +.|... -.|+-.|.+.+++++|..+.+.+....+.-|-.-.-.++..| .
T Consensus 264 LVvFrngEgALqVLP~L~~---~IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMK---HIPEAR--LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred eEEEeCCccHHHhchHHHh---hChHhh--hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 1222222211111 112222 245566888999999999998887544433322222222222 3
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC------hhHHHhhCChHHHHHHHH
Q 041942 351 AEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------IRHYGVHGDVELGRLANK 423 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~y~~~g~~~~a~~~~~ 423 (498)
..-|.+.|+-.-+.+..-|. .--.++..++.-..++++..-.+..+.. .-.+-| +..+...|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 44455555544444333221 1112223333344456666666666665 333333 334446677777777776
Q ss_pred HHHccCCCCCc-hHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 424 RLLNMRKDESG-DYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 424 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
++...+-.|.. ....|+++|.+.|+++-|.+++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 66554433333 3345566677777776666655444
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=1.3e-07 Score=90.91 Aligned_cols=250 Identities=15% Similarity=0.093 Sum_probs=166.2
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh------
Q 041942 209 ITGYAKQGEMEKANELFNEVPK--RD-VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA------ 279 (498)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~------ 279 (498)
...+...|++++|++.++.-.. .| ..........+.+.|+.++|..+|..+++. .|+...|...+..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 3455677888888888877554 23 345666778888889999999999888877 455555554444443
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHH-HHHHHHhcCCCCC-hhHHHHHHHHHHhCCCHHHHHHH
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE-RAIEVFLGMRDRD-VSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
...+.+....+|++..... |.......+.-.+.....+. .+..++..+..+. +.+|+.+-..|....+..-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 1224566777775444433 22222122222222212222 2334444444444 35666666667656555555666
Q ss_pred HHHHHHC----C----------CCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhH-------HHhhC
Q 041942 358 FREMQRL----K----------VRPTEI--TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRH-------YGVHG 413 (498)
Q Consensus 358 ~~~m~~~----~----------~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~-------y~~~g 413 (498)
+...... + -.|+.. ++..+...|...|++++|.+++++.++ .+|+ ++. |...|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCC
Confidence 6655432 1 123333 334556778899999999999999988 5676 333 33899
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCcc
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 466 (498)
++++|...++.+.++++.|..+-+..+..+.+.|+.++|.+++....+.+..|
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 99999999999999999999999999999999999999999999998877644
No 81
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=8.5e-07 Score=81.93 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=75.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHH-------hhC
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYG-------VHG 413 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~-------~~g 413 (498)
...+.+.|++..|+..|.++++.. +-|...|....-+|.+.|.+..|.+-.+..++ +.|+ ...|. ...
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie---L~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE---LDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHH
Confidence 456677888888888888888854 33577888888888888888888888777777 4666 33444 455
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (498)
++++|...|+++++.+|++..+...+.+++...
T Consensus 441 ~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 778888888888888888877777777666643
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.02 E-value=4.4e-07 Score=78.95 Aligned_cols=302 Identities=15% Similarity=0.112 Sum_probs=181.3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHH---HHHhcCChHHHHHHHhcCC--CCCcch-HHHHHHHH
Q 041942 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA---GYARRGELSMARSLFDEMP--VRDLVS-WNVMITGY 212 (498)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~~~--~~~~~~-~~~l~~~~ 212 (498)
+..-..-+.+.+...|++..|+..|...++.|+..|.++.+ .|...|+-..|+.-+.+.. +||-.. -..-...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 34444567777788888888888888888877777776643 5666777777776666665 444321 11123456
Q ss_pred HhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHH
Q 041942 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292 (498)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 292 (498)
.+.|.++.|..-|+.+.+.++. .|...+|.+-+..+. ........+..+...|+...|+....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 6777777777777776643221 000111110000000 00111222334455666666766665
Q ss_pred HHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhc---CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 041942 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG---MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369 (498)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 369 (498)
.+++-. +.+...+..-..+|...|++..|+.-++. +...+..++--+-..+...|+.+.++.-.++..+ +.||
T Consensus 180 ~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 180 HLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 555443 34555666666777777777777655443 3344556666666666777777777777777766 4565
Q ss_pred HHH----HHHH---H------HHHhhcCCHHHHHHHHHHhHHhcCCCCC------------hhHHHhhCChHHHHHHHHH
Q 041942 370 EIT----FVGV---L------VACSHAGKVEEGKKYFKLMRDEYNIEPN------------IRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 370 ~~~----~~~l---~------~~~~~~g~~~~a~~~~~~~~~~~~~~p~------------~~~y~~~g~~~~a~~~~~~ 424 (498)
... |..| . ......++|.++.+.-+...+ ..|. -..|..-|++.+|.+...+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 321 1111 1 223455667777777666655 3444 1223366788888888888
Q ss_pred HHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 425 LLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+++.+|+|..++-.-+.+|.-...+++|+.-|++..+.+.
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888766543
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=1.2e-07 Score=77.97 Aligned_cols=193 Identities=12% Similarity=0.008 Sum_probs=123.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 281 (498)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 334455566666666666666666542 23356666666677777777777776666543 22344555556666666
Q ss_pred CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHH
Q 041942 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
|++++|...|+..+..........+|..+.-+..+.|+.+.|...|++..+. ...+.-.+.......|++-.|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 6777777777555555544444556666666666677777777777665532 3445666667777777777887777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 359 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
++....+. ++.......|+.-...|+.+.+.++=.++.+.
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77766654 77777777777777777777777776666663
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=1.3e-07 Score=77.83 Aligned_cols=182 Identities=11% Similarity=-0.019 Sum_probs=137.0
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhcc---CCCCCcchHHHHHHHHHhc
Q 041942 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG---DAKMDVVAWSSLTAGYARR 184 (498)
Q Consensus 108 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~ 184 (498)
...|.-.|.+.|+...|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++ +.+.+..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344455666777777777777777664 33555677777777777777777777764 3335666777777778888
Q ss_pred CChHHHHHHHhcCC-CC----CcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHH
Q 041942 185 GELSMARSLFDEMP-VR----DLVSWNVMITGYAKQGEMEKANELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMF 256 (498)
Q Consensus 185 ~~~~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 256 (498)
|++++|...|++.. .| -..+|..+.-+..+.|+.+.|.+.|++..+. ...+.-.+.......|++-.|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 88888888888777 33 3467888888888999999999999887752 3456777888888999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 257 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
+.....+. ++..++...|..--..|+.+.+.++=
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 98887775 88888888888888889988888775
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=2.6e-08 Score=89.08 Aligned_cols=243 Identities=13% Similarity=0.066 Sum_probs=125.9
Q ss_pred HHhcCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 041942 181 YARRGELSMARSLFDEMPV----RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256 (498)
Q Consensus 181 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 256 (498)
+.-.|++..++.-.+ ... .+......+.+++...|+.+.+..-...-..|.......+...+...++-+.+..-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 344566666654443 111 112233445566667776665555444444455555544444443334444555555
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCC-
Q 041942 257 EEMRSVGERPDD-VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD- 334 (498)
Q Consensus 257 ~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 334 (498)
++....+..++. .........+...|+++.|.+++. .+ .+.......+..|.+.++++.|.+.++.|.+-+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~-----~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 90 KELLADQAGESNEIVQLLAATILFHEGDYEEALKLLH-----KG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCT-----TT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHH-----cc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 444433322222 222222344556677777776651 11 234444556677777777777777777766432
Q ss_pred hhHHHHHHH----HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 041942 335 VSTWSTLIG----GLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410 (498)
Q Consensus 335 ~~~~~~l~~----~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~ 410 (498)
-.+...+.. .+...+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+...
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~------------ 229 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE------------ 229 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC------------
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------
Confidence 122222332 232334677777777776553 456677777777777777777777776666533
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCc-hHHHHHHHHhhh
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW-NRVEKVRKLMDD 461 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 461 (498)
.+|.++.+...++.+....|+. +.+.+++.++..
T Consensus 230 -----------------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 230 -----------------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -----------------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -----------------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 4556666666666666666665 445556666554
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.99 E-value=8.6e-07 Score=84.66 Aligned_cols=245 Identities=14% Similarity=0.145 Sum_probs=143.1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChh--hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchH
Q 041942 209 ITGYAKQGEMEKANELFNEVPKRDVV--SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286 (498)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 286 (498)
+.+....+.+.+|..+++.+.+++.. -|..+...|...|+++.|.++|.+.- .++-.|..|.+.|+|+.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 44555667777777777777765443 46667788888888888888875432 34556777888888888
Q ss_pred HHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 041942 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366 (498)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 366 (498)
|.++-.+ -.+.......|-+-..-+-+.|++.+|.+++-.+..|+.. |..|-+.|..+..+++..+--...
T Consensus 810 a~kla~e---~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d~- 880 (1636)
T KOG3616|consen 810 AFKLAEE---CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGDH- 880 (1636)
T ss_pred HHHHHHH---hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChhh-
Confidence 8776522 2343344555555555566778888888888777777643 566667777766666655422110
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH-----------------------hcCCCCC----------------hh
Q 041942 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRD-----------------------EYNIEPN----------------IR 407 (498)
Q Consensus 367 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~p~----------------~~ 407 (498)
-..|-..+..-+...|++..|+..|-+... .-|-+.. +.
T Consensus 881 --l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavk 958 (1636)
T KOG3616|consen 881 --LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVK 958 (1636)
T ss_pred --hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHH
Confidence 122333333334444444444443322211 0111110 11
Q ss_pred HHHhhCChHHHHH------HHHHHHcc-----CCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeEE
Q 041942 408 HYGVHGDVELGRL------ANKRLLNM-----RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473 (498)
Q Consensus 408 ~y~~~g~~~~a~~------~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 473 (498)
..+++|-++.|.. .|+-+.++ ...-+.+...++..+...|++++|-+-|-+..+.+......|.-+
T Consensus 959 llnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqav 1035 (1636)
T KOG3616|consen 959 LLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAV 1035 (1636)
T ss_pred HHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcc
Confidence 2225555555543 12222211 122356778888889999999999999999888887655555433
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.90 E-value=2.3e-07 Score=83.11 Aligned_cols=215 Identities=13% Similarity=0.038 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC-C----CCcchHHHHHHHHHhcC
Q 041942 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-V----RDLVSWNVMITGYAKQG 216 (498)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~----~~~~~~~~l~~~~~~~~ 216 (498)
....+.+++...|+.+.+..-......|.......+...+...++-+.++.-+++.. . .+..........+...|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 444556666677776666555554445555555444444443345555555554443 1 12222222334556677
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----ccCCchHHHHHHH
Q 041942 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA----DLGDLEVGKKVHC 292 (498)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~~~~~~a~~~~~ 292 (498)
++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++. ..+.+..|..+|+
T Consensus 117 ~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~ 191 (290)
T PF04733_consen 117 DYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFE 191 (290)
T ss_dssp HHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 888888777765 456666777888888888888888888887542 33 33333443332 2335777777775
Q ss_pred HHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 041942 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFA-EESIAMFREMQR 363 (498)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~ 363 (498)
++.... .+++.+.+.+..++...|++++|.+++.+..+ .++.+...++.+....|+. +.+.+++.++..
T Consensus 192 El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 192 ELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 543332 34555555566666666666666666555432 1334444444444445544 444455555554
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=1.6e-07 Score=95.48 Aligned_cols=198 Identities=14% Similarity=0.120 Sum_probs=167.4
Q ss_pred CCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc---hhhHHHHHHHHHhcCCHHHHHHHHhcCCCC-C-hhHHH
Q 041942 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK---VLHGNALIDMYAKCGSIERAIEVFLGMRDR-D-VSTWS 339 (498)
Q Consensus 265 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~ 339 (498)
+-+...|...|......++.++|+++.++.+..-++... ...|.++++.-..-|.-+...++|+++.+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 445567888888888999999999999777766544332 456778888888888888999999998863 3 46788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----------hhHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN----------IRHY 409 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~y 409 (498)
.|...|.+.+++++|.++|+.|.+. +......|..++..+.+..+-+.|..++++..+ .-|. +..-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHH
Confidence 9999999999999999999999885 456778999999999999999999999999987 3444 1122
Q ss_pred HhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCcc
Q 041942 410 GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 466 (498)
.++|+.++++.+|+-.+.-.|.-...|+.+++.-.++|..+.+..+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 299999999999999999999999999999999999999999999999999998865
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.4e-05 Score=75.00 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=112.3
Q ss_pred hchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHH--HHHHH--hccCChHHHHH
Q 041942 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT--IIRGS--AQSQNPLDAVF 91 (498)
Q Consensus 16 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--ll~~~--~~~g~~~~A~~ 91 (498)
+..+.|.+....+...+. -|..++..-+- +..+ .+.+++|+.+.+.-.... +++. +=.+| .+.+..++|+.
T Consensus 26 ~e~e~a~k~~~Kil~~~p-dd~~a~~cKvV-alIq-~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVP-DDEDAIRCKVV-ALIQ-LDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred hHHHHHHHHHHHHHhcCC-CcHhhHhhhHh-hhhh-hhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHHHH
Confidence 355677777777777763 33444444444 5666 899999997776654211 2222 23344 46889999999
Q ss_pred HHHHHHhCCCCCC-HhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCC-hHHHHHHHHHHHhcCChhHHHHhhccCCCC
Q 041942 92 LYTQMEKCSIKPN-KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN-RFVRNSLIYFHANCGDLNTASVLFDGDAKM 169 (498)
Q Consensus 92 ~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 169 (498)
.++- ..++ ..+...-...|.+.+++++|..+|+.+.+.+.+.. ...-..++.+-. .-.+. +.+.....
T Consensus 101 ~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 101 TLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEV 170 (652)
T ss_pred HHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCC
Confidence 9883 3333 33566666778899999999999999987653211 111111111111 11111 23333333
Q ss_pred CcchHHHHH---HHHHhcCChHHHHHHHhcCC--------CCC-----c-----chHHHHHHHHHhcCChHHHHHHHhhC
Q 041942 170 DVVAWSSLT---AGYARRGELSMARSLFDEMP--------VRD-----L-----VSWNVMITGYAKQGEMEKANELFNEV 228 (498)
Q Consensus 170 ~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~--------~~~-----~-----~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (498)
...+|..+. ..+...|++.+|+++++... ..| + .+-.-|..++...|+.++|..++..+
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 333444333 34556777777777777662 111 0 01223444566677777777777665
Q ss_pred C
Q 041942 229 P 229 (498)
Q Consensus 229 ~ 229 (498)
.
T Consensus 251 i 251 (652)
T KOG2376|consen 251 I 251 (652)
T ss_pred H
Confidence 5
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=8.3e-07 Score=80.72 Aligned_cols=191 Identities=8% Similarity=-0.101 Sum_probs=129.2
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHH
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF 149 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 149 (498)
...|..+...+.+.|+.++|...|++..+.. +.+...|+.+...+...|+++.|...|+...+.. +-+..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3457777788888999999999999988753 3457788888888999999999999999998864 3356677888888
Q ss_pred HHhcCChhHHHHhhccCCCCCc--chHHHHHHHHHhcCChHHHHHHHhcCC-CCCcchHHHHHHHHHhcCChHHH--HHH
Q 041942 150 HANCGDLNTASVLFDGDAKMDV--VAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEMEKA--NEL 224 (498)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A--~~~ 224 (498)
+...|++++|.+.|+...+.++ .............+++++|...|.+.. ..+...|. ........|+...+ .+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~~~~~~ 220 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEETLMER 220 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHHHHHHH
Confidence 8889999999998887554322 212222223445678888888886544 21222222 12223334554333 322
Q ss_pred HhhCCC-------CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 041942 225 FNEVPK-------RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 225 ~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 263 (498)
+....+ ....+|..+...+...|++++|...|++..+.+
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222212 123567888888888888888888888888664
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.88 E-value=9.4e-06 Score=76.57 Aligned_cols=190 Identities=8% Similarity=-0.044 Sum_probs=106.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCC-CCCCHh-hHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHH---H
Q 041942 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKF-TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS---L 146 (498)
Q Consensus 72 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 146 (498)
.|..+...+...|+.+.+.+.+....+.. ..++.. ........+...|+++.+..++++..+.. +.+...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 34444555555666666666555554321 111211 11112223455677777777777777653 223333331 1
Q ss_pred HHHHHhcCChhHHHHhhccCCCCCc---chHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHH
Q 041942 147 IYFHANCGDLNTASVLFDGDAKMDV---VAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEK 220 (498)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 220 (498)
.......+..+.+.+.++...+.++ .....+...+...|++++|...+++.. +.+...+..+..++...|++++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 1112223445555555544222222 223344456677788888888877776 4445566777777788888888
Q ss_pred HHHHHhhCCCC-----Ch--hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 041942 221 ANELFNEVPKR-----DV--VSWNAMISGYVLCGMNKQALEMFEEMRSV 262 (498)
Q Consensus 221 A~~~~~~~~~~-----~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 262 (498)
|...+++..+. +. ..|..+...+...|++++|..++++....
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88887776541 11 23445677788888888888888887533
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=8.2e-06 Score=69.89 Aligned_cols=187 Identities=14% Similarity=0.026 Sum_probs=86.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHH-HHHHHHHh
Q 041942 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRN-SLIYFHAN 152 (498)
Q Consensus 74 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~ 152 (498)
++.+..+.+..++.+|++++..-.++. +.+....+.|..+|.+..++..|-..++++-.. .|...-|. --...+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 334444445555555555555554432 124444455555555555555555555555443 22222221 11233344
Q ss_pred cCChhHHHHhhccCCCC-CcchHHHHH--HHHHhcCChHHHHHHHhcCC-CCCcchHHHHHHHHHhcCChHHHHHHHhhC
Q 041942 153 CGDLNTASVLFDGDAKM-DVVAWSSLT--AGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEMEKANELFNEV 228 (498)
Q Consensus 153 ~g~~~~A~~~~~~~~~~-~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (498)
.+.+..|+++...+... +...-..-+ ......+++-.+..++++.. ..+..+.+.......+.|+.+.|.+-|+..
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 45555555555444432 111100001 12233455555555555555 344444444444455556666666666555
Q ss_pred CC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 041942 229 PK----RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264 (498)
Q Consensus 229 ~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 264 (498)
.+ .....|+.-+..| +.|+++.|+++..+++++|+
T Consensus 171 lqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI 209 (459)
T ss_pred HhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence 43 2334455444333 44556666666666555543
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=4.8e-06 Score=79.77 Aligned_cols=254 Identities=16% Similarity=0.173 Sum_probs=135.7
Q ss_pred HHHHHHHhcCChhHHHHhhcc--CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 041942 145 SLIYFHANCGDLNTASVLFDG--DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222 (498)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 222 (498)
+.|+.|.+.|....|.+.... ....|......+..++.+..-+++|-.+|+++..++- .+.+|-+-.-+-+|.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kai 694 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAI 694 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHH
Confidence 456777777777776655432 2224555555555666666666666666665542221 222222222233333
Q ss_pred HHHhhCCCCChh---------------------------hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041942 223 ELFNEVPKRDVV---------------------------SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275 (498)
Q Consensus 223 ~~~~~~~~~~~~---------------------------~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 275 (498)
++-+-.-...++ ..-.-+.+......|.+|+.+++.+..... -..-|..+.
T Consensus 695 elarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~ia 772 (1636)
T KOG3616|consen 695 ELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIA 772 (1636)
T ss_pred HHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHH
Confidence 333222211110 111123344455667777777777665532 233456666
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHHHHHHHhCCCHHH
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHGFAEE 353 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 353 (498)
..|+..|+++.|.++| .....++-.|.+|.+.|+|+.|.++-.+...| ....|-+-..-+-.+|++.+
T Consensus 773 dhyan~~dfe~ae~lf----------~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELF----------TEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred HHhccchhHHHHHHHH----------HhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhh
Confidence 7777777777777777 12233455677777778887777777666554 34455555556667777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHhhCChHHHHHHHHHH
Q 041942 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN----IRHYGVHGDVELGRLANKRL 425 (498)
Q Consensus 354 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~~g~~~~a~~~~~~~ 425 (498)
|.++|-..- .|+. .+..|-+.|..+..+++.++-.-+ .+.-+ ...|...|+++.|+..|-++
T Consensus 843 aeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d-~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 843 AEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD-HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh-hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 777664432 2432 355666777777766666543220 01111 22233556666665555443
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.4e-05 Score=77.58 Aligned_cols=233 Identities=14% Similarity=0.117 Sum_probs=142.0
Q ss_pred cChHHHHHHHHh-hhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhC-C--------CCCC
Q 041942 35 SDSSALRELIYS-GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-S--------IKPN 104 (498)
Q Consensus 35 ~~~~~~~~ll~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~--------~~p~ 104 (498)
=|..+-.+++.. .|.- .|+.+.|.+-.+.+ .+-.+|..+.+.|.+.++++-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvt-iG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVT-IGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEE-eccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 355565666641 4555 89999998877666 45567999999999999998887777776442 1 1222
Q ss_pred HhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC-CcchHHHHHHHHHh
Q 041942 105 KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM-DVVAWSSLTAGYAR 183 (498)
Q Consensus 105 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~ 183 (498)
.+=.-..-.....|.+++|..+|++.++. ..|-..|-..|.+++|.++-+.--.- -..||.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22222222235678999999999998874 34556677889999999887653331 22356666666777
Q ss_pred cCChHHHHHHHhcCCCC-----------------------CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHH
Q 041942 184 RGELSMARSLFDEMPVR-----------------------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240 (498)
Q Consensus 184 ~~~~~~A~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 240 (498)
.++.+.|++.|++...+ |...|.--....-..|+.+.|+.+|....+ |..++
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~V 945 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMV 945 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhhe
Confidence 88899999998877622 222222223333345666666666655432 33344
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
...|-.|+.++|-++-++- -|......+...|-..|++.+|..+|
T Consensus 946 rI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred eeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4444445555554443321 13344445555566666666655555
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.85 E-value=4.2e-06 Score=78.98 Aligned_cols=262 Identities=12% Similarity=0.071 Sum_probs=139.9
Q ss_pred HHhcCChHHHHHHHhcCC---CCCcchHHH---HHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHH
Q 041942 181 YARRGELSMARSLFDEMP---VRDLVSWNV---MITGYAKQGEMEKANELFNEVPK--R-DVVSWNAMISGYVLCGMNKQ 251 (498)
Q Consensus 181 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~ 251 (498)
+...|++++|...+++.. +.+...+.. ........+..+.+.+.+..... | .......+...+...|++++
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 444555666666555544 222222221 11111123444455555544222 1 22333445567777788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcch--hhHHHHHHHHHhcCCHHHHHHHHhc
Q 041942 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV--LHGNALIDMYAKCGSIERAIEVFLG 329 (498)
Q Consensus 252 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (498)
|...+++..+.. +.+...+..+...+...|++++|...+++.+......++. ..+..+...+...|++++|..++++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888877664 3345566677777778888888888875555543322222 2344566777788888888888877
Q ss_pred CCCCCh--hHH----H--HHHHHHHhCCCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 330 MRDRDV--STW----S--TLIGGLAFHGFAEESIAM--FREMQRLKV--RPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 330 ~~~~~~--~~~----~--~l~~~~~~~~~~~~A~~~--~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
...+.. ... + .++.-+...|....+.++ +........ ............++...|+.+.|..+++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 652211 111 1 222223334433333222 111111100 1112222356677788889999999998886
Q ss_pred HhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 398 DEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 398 ~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.. ...++.. .............+.++...|++++|.+.+.+.....
T Consensus 292 ~~-~~~~~~~-------------------~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 292 GR-ASSADDN-------------------KQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HH-HhccCch-------------------hhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 62 1110000 0011123445666777888899999999888877554
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=4.2e-06 Score=73.01 Aligned_cols=191 Identities=13% Similarity=0.011 Sum_probs=116.8
Q ss_pred CCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHH---HH
Q 041942 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL---TA 179 (498)
Q Consensus 103 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~ 179 (498)
.+..-..-+-..+...|++..|+.-|...++.+ +.+-.++-.-...|...|+-.-|+.=+..+.+.-+.-+.+- ..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 345555667777888899999999999888643 22233444455678888988888877777665333333333 34
Q ss_pred HHHhcCChHHHHHHHhcCC--CCCcc----hH------------HHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHH
Q 041942 180 GYARRGELSMARSLFDEMP--VRDLV----SW------------NVMITGYAKQGEMEKANELFNEVPK---RDVVSWNA 238 (498)
Q Consensus 180 ~~~~~~~~~~A~~~~~~~~--~~~~~----~~------------~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 238 (498)
.+.+.|.++.|..-|+.+. .|+.. .+ ...+..+...|+...|++....+.+ -|...|..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 6889999999999999887 22211 11 1223344555666666666665543 35556666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 295 (498)
-..+|...|++..|+.=++..-+.. ..+..++.-+-..+...|+.+.+....++.+
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6666666666666665555544332 3334444445555566666666655553433
No 97
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=1.6e-05 Score=76.88 Aligned_cols=361 Identities=13% Similarity=0.015 Sum_probs=225.6
Q ss_pred HHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC----C-
Q 041942 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM----D- 170 (498)
Q Consensus 96 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~- 170 (498)
+....+.-|...|..|.-++.+.|+++.+-+.|++....- -.....|+.+...|...|.-..|..+++.-..+ +
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 3333456677888888888888899998888888887643 345678888888888888888888888754432 2
Q ss_pred cchHHHHHHHHH-hcCChHHHHHHHhcCC--------CCCcchHHHHHHHHHhc-----------CChHHHHHHHhhCCC
Q 041942 171 VVAWSSLTAGYA-RRGELSMARSLFDEMP--------VRDLVSWNVMITGYAKQ-----------GEMEKANELFNEVPK 230 (498)
Q Consensus 171 ~~~~~~l~~~~~-~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~ 230 (498)
...+-..-..|. +-+.+++++.+-.+.. ...+..|..+.-+|... ....++...+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 222222223333 3455555555544443 33344555554444322 123455666666543
Q ss_pred ---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhH
Q 041942 231 ---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307 (498)
Q Consensus 231 ---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (498)
.|+.+...+.--|+-.++.+.|++..++..+.+-.-+...|..+.-.+...+++..|..+.+..+...+.......
T Consensus 473 ~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~- 551 (799)
T KOG4162|consen 473 FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD- 551 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch-
Confidence 2333333344456677889999999999988866778888988888889999999999999777777664221111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC------------------------------C--ChhHHHHHHHHHHhCCCHHHHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD------------------------------R--DVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~------------------------------~--~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
.-+..-..-++.++|+.....+.. + ...++..+..-....+ ..+.
T Consensus 552 -~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~ 628 (799)
T KOG4162|consen 552 -GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAG 628 (799)
T ss_pred -hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcc
Confidence 111222224555555443322210 0 1122222222211111 0000
Q ss_pred HHHHHHHHCCCCCC--------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHH
Q 041942 356 AMFREMQRLKVRPT--------EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGR 419 (498)
Q Consensus 356 ~~~~~m~~~~~~p~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~ 419 (498)
.-. .+...-+.|. ...|......+.+.++.++|...+.+... +.|- ...+...|..++|.
T Consensus 629 se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 000 0111112222 22455556788899999999988888866 4444 23344788999999
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH--HHHHhhhCCCc
Q 041942 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK--VRKLMDDSDIK 465 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~ 465 (498)
+.|..++.++|+++....+++.++.+.|+..-|.. ++..+.+.+..
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999998888887 89999886653
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1.4e-07 Score=87.67 Aligned_cols=214 Identities=17% Similarity=0.219 Sum_probs=164.0
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHH
Q 041942 178 TAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQ 251 (498)
Q Consensus 178 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 251 (498)
..-+.+.|++.+|.-.|+... +.+...|..|.......++-..|+..+.+..+ .|....-.|.-.|...|.-..
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 344678899999999999887 33456888888888888888888888887765 356677788888999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-----------HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCH
Q 041942 252 ALEMFEEMRSVGERPDDVTMLSLL-----------TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 252 a~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (498)
|+..++.-+....+ |..+. ..+.....+....++|-++....+..+|+.+...|.-.|.-.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999887654211 00000 112222334555666657777777778888888999999999999
Q ss_pred HHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 041942 321 ERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLM 396 (498)
Q Consensus 321 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 396 (498)
++|.+.|+.... | |...||.|...++...+..+|+..|+++++ ++|+ .+....|..+|+..|.+++|.+.|-.+
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999987763 4 778999999999999999999999999998 7887 455566777899999999999888776
Q ss_pred HH
Q 041942 397 RD 398 (498)
Q Consensus 397 ~~ 398 (498)
+.
T Consensus 525 L~ 526 (579)
T KOG1125|consen 525 LS 526 (579)
T ss_pred HH
Confidence 55
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.78 E-value=3.8e-07 Score=80.40 Aligned_cols=183 Identities=14% Similarity=0.003 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc-hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hh---HHH
Q 041942 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-VS---TWS 339 (498)
Q Consensus 267 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~---~~~ 339 (498)
....+..+...+...|+++.|...+++.+...+..+. ...+..+..++.+.|++++|...++++.+ |+ .. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4455666666777777777777777555554433222 23445566677777777777777776653 21 11 344
Q ss_pred HHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 041942 340 TLIGGLAFH--------GFAEESIAMFREMQRLKVRPTEI-TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410 (498)
Q Consensus 340 ~l~~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~ 410 (498)
.+..++... |++++|.+.++++.+. .|+.. .+..+..... ......-.... -...|.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~~~~~~~--------~a~~~~ 177 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRLAGKELY--------VARFYL 177 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHHHHHHHH--------HHHHHH
Confidence 445555443 5667777777777663 34422 2211111100 00000000000 023456
Q ss_pred hhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 411 VHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
+.|++++|...++++++..|+++ .++..++.++...|++++|..+++.+....
T Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 178 KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 78999999999999998877654 689999999999999999999999987643
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=3e-05 Score=82.94 Aligned_cols=319 Identities=12% Similarity=-0.024 Sum_probs=174.1
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCC------CC--hHHHHHHHHHHH
Q 041942 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE------FN--RFVRNSLIYFHA 151 (498)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~ 151 (498)
....|++..+...+..+.......+..........+...|+++++...+....+.--. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445666666666655522111112222223333445667788887777766543111 11 112223334556
Q ss_pred hcCChhHHHHhhccCCC----CCc----chHHHHHHHHHhcCChHHHHHHHhcCC-------CCC--cchHHHHHHHHHh
Q 041942 152 NCGDLNTASVLFDGDAK----MDV----VAWSSLTAGYARRGELSMARSLFDEMP-------VRD--LVSWNVMITGYAK 214 (498)
Q Consensus 152 ~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~--~~~~~~l~~~~~~ 214 (498)
..|++++|...++.... .+. ...+.+...+...|+++.|...+++.. .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 77888888777765322 111 123445556667888888877777665 111 1234455666777
Q ss_pred cCChHHHHHHHhhCCC-------CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHh
Q 041942 215 QGEMEKANELFNEVPK-------RD----VVSWNAMISGYVLCGMNKQALEMFEEMRSVG--ERP--DDVTMLSLLTACA 279 (498)
Q Consensus 215 ~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p--~~~~~~~li~~~~ 279 (498)
.|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+ ....+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888777765442 11 1223344555666788888887777665321 112 1233334455666
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhH-----HHHHHHHHhcCCHHHHHHHHhcCCCCC---h----hHHHHHHHHHHh
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHG-----NALIDMYAKCGSIERAIEVFLGMRDRD---V----STWSTLIGGLAF 347 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~---~----~~~~~l~~~~~~ 347 (498)
..|+.+.|...+.+.............+ ...+..+...|+.+.|...+.....+. . ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 7788888877774443321111100000 111233445677888888776655321 1 113455666777
Q ss_pred CCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 348 HGFAEESIAMFREMQRL----KVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 348 ~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|++++|...+.+.... |..++ ..+...+..++.+.|+.++|...+.+..+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888888887776542 22222 23455555677788888888888877776
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=7.5e-05 Score=74.42 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=126.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCC
Q 041942 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK--RDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 248 (498)
+..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++-.+++....+ +.+..=+.|+.+|++.++
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNR 1181 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhch
Confidence 345777777777777777777766554 3556677777777777777777777655543 233334567777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHh
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (498)
..+.++.+. -|+......+..-|...+.++.|.-+| .++.-|..|...+...|+++.|.+.-+
T Consensus 1182 l~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y----------~~vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1182 LTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLY----------SNVSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHH----------HHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 666555442 566666677777777777777777777 334455667777777787777776655
Q ss_pred cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 041942 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396 (498)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 396 (498)
+.. +..+|-.+-.+|...+.+.-| +|...++.....-...++..|...|-+++.+.+++..
T Consensus 1245 KAn--s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1245 KAN--STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hcc--chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 433 455666666666655554432 2333333344455566666677777777666666544
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=4.3e-06 Score=81.06 Aligned_cols=354 Identities=10% Similarity=0.080 Sum_probs=210.9
Q ss_pred CCChhhHHHHHHH--HhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHh-C--------
Q 041942 67 EPDTFMYNTIIRG--SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY-G-------- 135 (498)
Q Consensus 67 ~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-------- 135 (498)
.-|..+-..++.. |..-|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+..|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 3456666666653 677899999988877665 3467888888898888888777766666431 1
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCC-cchHHHHHHHHHh
Q 041942 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRD-LVSWNVMITGYAK 214 (498)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~ 214 (498)
-.++ .+-....-.....|.+++|+.+|.+-.. |..|-..|-..|.|++|.++-+.-...- -.||-.-..-+-.
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 1121 2222233334566777788777765543 3344455666778888877765433111 1345555555566
Q ss_pred cCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHH
Q 041942 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294 (498)
Q Consensus 215 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 294 (498)
.++.+.|++.|++..-+--..+..|.. ++.....+.+.+. |...|.-...-+-..|+.+.|..+| +.
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y-~~ 937 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFY-SS 937 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHH-HH
Confidence 777888888777765433333322221 2222223333332 3345555556666778888888888 43
Q ss_pred HHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CC--CCH
Q 041942 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK--VR--PTE 370 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~--p~~ 370 (498)
.+. |-+++...|-.|+.++|-++-++- .|......|.+.|...|++.+|+.+|.+..... ++ -..
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn 1006 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN 1006 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 332 345666777788888888877653 366677778888888999999988888764310 00 000
Q ss_pred HHHHHHHHHHhhcC--CHHHHHHHHHHhHHhcCCCCC--hhHHHhhCChHHHHHHH---------HHH-HccCCC-CCch
Q 041942 371 ITFVGVLVACSHAG--KVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGRLAN---------KRL-LNMRKD-ESGD 435 (498)
Q Consensus 371 ~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~p~--~~~y~~~g~~~~a~~~~---------~~~-~~~~~~-~~~~ 435 (498)
..-.-|...+...| +.-.|.++|++. |..-+ +..|.+.|-+.+|.++. +.+ ..++|. ||..
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~----g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEEL----GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHc----chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 01111222222222 334445555543 32222 56677888887776532 111 134554 7788
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 436 YVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
.+.-+..+.+..++++|..++-..+
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8899999999999999988776554
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=1.1e-06 Score=74.32 Aligned_cols=114 Identities=9% Similarity=0.071 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhH-HHhhCC--hH
Q 041942 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRH-YGVHGD--VE 416 (498)
Q Consensus 348 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~-y~~~g~--~~ 416 (498)
.++.++++..+++..+.+ +.+...|..+...|...|+++.|...+++..+ +.|+ ... |...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 455566666666665532 23456666666667777777777777776666 3443 121 234454 47
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
+|.++++++++.+|+++.++..++..+.+.|++++|+..++++.+...+
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7888888888888888888888888888889999999988888776553
No 104
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.3e-05 Score=67.71 Aligned_cols=207 Identities=14% Similarity=0.144 Sum_probs=117.8
Q ss_pred cCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHH-HHHHHHH
Q 041942 184 RGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL-EMFEEMR 260 (498)
Q Consensus 184 ~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~ 260 (498)
.|++..++..-.... +.+...-..+.++|...|.......-...-..+.......+.......++.++-. ++.+.+.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a 100 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVA 100 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence 444444444443333 1222333334455556665544333333222333344444444444444444433 3344444
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHH
Q 041942 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR-DVSTWS 339 (498)
Q Consensus 261 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 339 (498)
......+......-...|+..|++++|.+.. +. + .+......=+..+.+..+++-|...++.|.+- +-.+.+
T Consensus 101 ~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~-~~----~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt 173 (299)
T KOG3081|consen 101 DSTDGSNLIDLLLAAIIYMHDGDFDEALKAL-HL----G--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLT 173 (299)
T ss_pred hhccchhHHHHHHhhHHhhcCCChHHHHHHH-hc----c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 4433444344444455677888888888776 22 1 12222222344556777788888888888764 345666
Q ss_pred HHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 340 TLIGGLAF----HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 340 ~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+...-++...|++++|..+++....
T Consensus 174 QLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 56665554 34678888888888764 578888888888888888888888888877766
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=3.1e-05 Score=66.43 Aligned_cols=311 Identities=14% Similarity=0.061 Sum_probs=201.3
Q ss_pred HHHHHHhhhhccCCChHHHHHhcccCC--CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHH-HHHh
Q 041942 40 LRELIYSGSVVIPGAINYAHKMFVKIT--EP-DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV-LKAC 115 (498)
Q Consensus 40 ~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~ 115 (498)
+...+. .+.+ ..++++|.+++..-. .| +....+.|.-.|....++..|-..|+++-. ..|...-|..- ...+
T Consensus 13 ftaviy-~lI~-d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVY-RLIR-DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHH-HHHH-HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHH
Confidence 344444 3445 788999999987766 33 555666777777888999999999999976 35766666543 3456
Q ss_pred hcccchhhHHHHHHHHHHhCCCCChHHHH--HHHHHHHhcCChhHHHHhhccCC-CCCcchHHHHHHHHHhcCChHHHHH
Q 041942 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRN--SLIYFHANCGDLNTASVLFDGDA-KMDVVAWSSLTAGYARRGELSMARS 192 (498)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 192 (498)
.+.+.+..|.++...|.+. ++...-. .-.......+++..+..+.+... +.+..+.+.......+.|+++.|++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 6778888888888887652 2211111 11122345688888999998887 4677777777777889999999999
Q ss_pred HHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-----------------CCh---------------hhH
Q 041942 193 LFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVPK-----------------RDV---------------VSW 236 (498)
Q Consensus 193 ~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------------~~~---------------~~~ 236 (498)
-|+... -.....|+..+ +..+.|+.+.|.+...++.+ +|+ ..+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 998877 23345566544 45677889999888877652 111 235
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHH
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSV-GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (498)
|.-...+.+.|+++.|.+.+.+|-.+ ....|++|...+.-.=. .+++-...+-+.-++...+ ....+|..++-.||
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP--fP~ETFANlLllyC 321 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP--FPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC--CChHHHHHHHHHHh
Confidence 55555667889999999998888632 33557777766543322 2334444444423334333 44567778888999
Q ss_pred hcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRDR-----DVSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
+..-++-|-+++.+-... +...|+.|=..-...-..++|.+-++.+
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999988765432 3334443333223344556665555444
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=4.5e-06 Score=85.41 Aligned_cols=226 Identities=16% Similarity=0.137 Sum_probs=162.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC-C-------CCcchHHHHHHHHHhcCChHHHHHHHhhCCC-CC-hhhHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP-V-------RDLVSWNVMITGYAKQGEMEKANELFNEVPK-RD-VVSWNAM 239 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~l 239 (498)
+...|-..|......++.++|.+++++.. . .-.-.|.++++.-..-|.-+...++|+++.+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34456666777777777777777777766 1 1123677777777777777788888888776 23 3567788
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCC
Q 041942 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319 (498)
Q Consensus 240 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (498)
...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.+.+...+-..........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 888888888888888888887542 2456678888888888888888888887777666554556666677777788888
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHH
Q 041942 320 IERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--EITFVGVLVACSHAGKVEEGKKYFK 394 (498)
Q Consensus 320 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (498)
.+.+..+|+.... +-...|+..++.=.++|+.+.+..+|++.+..++.|- ...|...+..--+.|+-..++.+=.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKA 1695 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 8888888887764 2456888888888888888889999999888877775 3455555555555566555444443
Q ss_pred Hh
Q 041942 395 LM 396 (498)
Q Consensus 395 ~~ 396 (498)
++
T Consensus 1696 rA 1697 (1710)
T KOG1070|consen 1696 RA 1697 (1710)
T ss_pred HH
Confidence 33
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.64 E-value=1e-06 Score=70.48 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=64.2
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------- 405 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------- 405 (498)
++..+..+...+...|++++|...|+.+.. ..| +...+..+..++.+.|++++|...+++..+ ..|+
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~---l~p~~~~a~~~ 97 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM---LDASHPEPVYQ 97 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHH
Confidence 333444556666677777777777777766 334 456666666677777777777777777665 3333
Q ss_pred -hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 406 -IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 406 -~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
...+...|++++|...|+++++..|+++..|...+.+.
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 22233556666666666666666666666665555543
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=0.00061 Score=73.05 Aligned_cols=316 Identities=11% Similarity=-0.000 Sum_probs=201.8
Q ss_pred HHHhcCChhHHHHhhccCCC----CCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCC---c-----chHHHHHHHH
Q 041942 149 FHANCGDLNTASVLFDGDAK----MDVVAWSSLTAGYARRGELSMARSLFDEMP----VRD---L-----VSWNVMITGY 212 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~---~-----~~~~~l~~~~ 212 (498)
.....|+++.+..+++.+.. .++.........+...|++++|..++.... ..+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556777777777766532 233333444556677889999888887653 111 1 1122233456
Q ss_pred HhcCChHHHHHHHhhCCC----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHh
Q 041942 213 AKQGEMEKANELFNEVPK----RDV----VSWNAMISGYVLCGMNKQALEMFEEMRSVGE---RPD--DVTMLSLLTACA 279 (498)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~~~~~~li~~~~ 279 (498)
...|++++|...++.... .+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 688999999998887543 121 2445566777889999999999988764311 111 234455566778
Q ss_pred ccCCchHHHHHHHHHHHh---hcCC--c-chhhHHHHHHHHHhcCCHHHHHHHHhcCCC------C--ChhHHHHHHHHH
Q 041942 280 DLGDLEVGKKVHCTLLDM---TSGV--A-KVLHGNALIDMYAKCGSIERAIEVFLGMRD------R--DVSTWSTLIGGL 345 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~~ 345 (498)
..|+++.|...+++.... .+.. + ....+..+...+...|++++|...+.+... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998665543 2211 1 122334455667778999999988876542 1 133455566778
Q ss_pred HhCCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----------hhHH
Q 041942 346 AFHGFAEESIAMFREMQRLK--VRPTEI--TF--VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN----------IRHY 409 (498)
Q Consensus 346 ~~~~~~~~A~~~~~~m~~~~--~~p~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~y 409 (498)
...|++++|...+.++.... ...... .. ...+..+...|+.+.|.+++..... ...... ...+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-PEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHH
Confidence 88999999999998886521 111111 11 1122444557899999998877644 111111 1234
Q ss_pred HhhCChHHHHHHHHHHHccCCCCCch------HHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 410 GVHGDVELGRLANKRLLNMRKDESGD------YVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
...|+.++|...++++++........ +..++.++...|+.++|...+.+..+..-.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 48899999999999999765443333 234567888999999999999999987643
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00061 Score=68.28 Aligned_cols=365 Identities=14% Similarity=0.119 Sum_probs=252.5
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCCHhhHH
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS--IKPNKFTFS 109 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~ 109 (498)
..|+..|..++.. -. ..+-...-++..... ..|+..-+..+.++...+-+.+-++++++..-.. ..-+...-+
T Consensus 949 R~D~~LW~~VL~e-~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNE-EN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQN 1025 (1666)
T ss_pred ccChHHHHHHHhc-cC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhh
Confidence 3567777777741 00 011112222333332 4566667778889999999999999999986422 122333344
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHH
Q 041942 110 FVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189 (498)
Q Consensus 110 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 189 (498)
.||-...+ -+...+.+..+++-..+ .| .+.......+-+++|..+|++... +....+.|+. .-+..+.
T Consensus 1026 LLiLtAik-ad~trVm~YI~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldR 1093 (1666)
T KOG0985|consen 1026 LLILTAIK-ADRTRVMEYINRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDR 1093 (1666)
T ss_pred hHHHHHhh-cChHHHHHHHHHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHH
Confidence 55544333 34556666666665433 12 234455667778999999876532 2333333433 3456777
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH
Q 041942 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269 (498)
Q Consensus 190 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 269 (498)
|.++-++.. .+..|..+..+-.+.|.+.+|.+-|-+. .|+..|.-++....+.|.|++-...+...++..-.|...
T Consensus 1094 A~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id 1169 (1666)
T KOG0985|consen 1094 AYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID 1169 (1666)
T ss_pred HHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch
Confidence 777777664 4467899999999999999999888665 456678889999999999999999988777776666554
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCC
Q 041942 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349 (498)
Q Consensus 270 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (498)
+.||-+|++.+++.+...+. ..|+......+.+-|...|.++.|.-+|.. +.-|..|...+...|
T Consensus 1170 --~eLi~AyAkt~rl~elE~fi--------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1170 --SELIFAYAKTNRLTELEEFI--------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLG 1234 (1666)
T ss_pred --HHHHHHHHHhchHHHHHHHh--------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHH
Confidence 46888999999988877766 236666667788888888999988888864 557888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC---------ChhHHHhhCChHHHHH
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP---------NIRHYGVHGDVELGRL 420 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p---------~~~~y~~~g~~~~a~~ 420 (498)
+++.|...-++. .+..||..+-.+|...+.+.-|.- .|+.. -+..|...|-+++-..
T Consensus 1235 eyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQi--------CGL~iivhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1235 EYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQI--------CGLNIIVHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred HHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHh--------cCceEEEehHhHHHHHHHHHhcCcHHHHHH
Confidence 999988765543 456789888899988776654432 22211 1556778999999999
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhC
Q 041942 421 ANKRLLNMRKDESGDYVLLSNIYASR 446 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (498)
+++..+-+.......+..|+-.|.+-
T Consensus 1301 l~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1301 LLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 99999988888888888887777654
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=4.6e-06 Score=79.99 Aligned_cols=238 Identities=14% Similarity=0.115 Sum_probs=172.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 283 (498)
.-..+...+.+.|-...|..+|++. ..|.-++.+|...|+..+|..+..+..+. +||+..|..+........-
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 3355677888999999999999874 56777888999999999999998888873 7888889888888777777
Q ss_pred chHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHH
Q 041942 284 LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFRE 360 (498)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (498)
+++|.++.+....... ..+.......++++++.+.|+.-.+- -..+|-.+..+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sarA~--------r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQ--------RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHHHH--------HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 8888888855554421 12222233478899999998754432 457888888888999999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--hhHH----HhhCChHHHHHHHHHHHccC--CC
Q 041942 361 MQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHY----GVHGDVELGRLANKRLLNMR--KD 431 (498)
Q Consensus 361 m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y----~~~g~~~~a~~~~~~~~~~~--~~ 431 (498)
... ..|+ ...|+.+-.+|.+.|+-.+|...+++..+ ....|= -..| .+.|.+++|.+++.++..+. ..
T Consensus 545 cvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 545 CVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred Hhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 888 6776 67899999999999999999999999888 442221 1122 27788888888888877543 23
Q ss_pred CCchHHHHHHHHHhCCC---chHHHHHHHHh
Q 041942 432 ESGDYVLLSNIYASRGE---WNRVEKVRKLM 459 (498)
Q Consensus 432 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~m 459 (498)
|+.+...++....+.-. .+++.......
T Consensus 622 d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~ 652 (777)
T KOG1128|consen 622 DDEVLLIIVRTVLEGMTDESGDEATGLKGKL 652 (777)
T ss_pred cchhhHHHHHHHHhhccccccchhhhhhHHH
Confidence 55666666665554432 44444444333
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.61 E-value=1.5e-05 Score=79.08 Aligned_cols=433 Identities=12% Similarity=0.027 Sum_probs=228.3
Q ss_pred hHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 041942 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQME 97 (498)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 97 (498)
+..+...+....+.|+-...-..+..+|+. ..+...|.+.|+... ..+...+-.+...|++..+++.|..+.-..-
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd-~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRD-SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 344445555555555544433334437777 557778888887776 3445667778888888888888888733332
Q ss_pred hCC-CCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcch-HH
Q 041942 98 KCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA-WS 175 (498)
Q Consensus 98 ~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 175 (498)
+.. ...-..-|...--.+...+++..+..-|+...+.. +.|...|..+..+|.++|++..|.++|++....++.. |.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211 00011223332233456677888888888887765 4477788888888888888888888887665543332 22
Q ss_pred H--HHHHHHhcCChHHHHHHHhcCC---------CCC-cchHHHHHHHHHhcCChHHHHHHHhhCC-------C----CC
Q 041942 176 S--LTAGYARRGELSMARSLFDEMP---------VRD-LVSWNVMITGYAKQGEMEKANELFNEVP-------K----RD 232 (498)
Q Consensus 176 ~--l~~~~~~~~~~~~A~~~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~----~~ 232 (498)
. .....+..|.+.+|+..+.... ..+ ..++..+...+.-.|=..+|..+++... . .+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 2 2233456788888888777665 111 1222222222222232223333332221 1 11
Q ss_pred hhhHHHHHHHHHhCCC--hHH----HHHH-HHHHHhCCCCC--------------------CHHHHHHHHHHHhc-----
Q 041942 233 VVSWNAMISGYVLCGM--NKQ----ALEM-FEEMRSVGERP--------------------DDVTMLSLLTACAD----- 280 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~--~~~----a~~~-~~~m~~~g~~p--------------------~~~~~~~li~~~~~----- 280 (498)
...|-.+-.+|.---. ++. ...+ +.+....+.-| +..+|..++..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 1122211111110000 000 0001 11122222111 12222222222211
Q ss_pred -cC--CchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHH
Q 041942 281 -LG--DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEES 354 (498)
Q Consensus 281 -~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 354 (498)
.+ +...|..-+...++.. ..+..+|+.|... ...|++.-|...|-+-. +.+..+|..+.-.+....+++.|
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 01 1112333332222211 1233444444333 33455555555553322 23556777777777788888889
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH---hcCCCCChhHHH-----------------hhC
Q 041942 355 IAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD---EYNIEPNIRHYG-----------------VHG 413 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~p~~~~y~-----------------~~g 413 (498)
...|..... +.|+ ...|......-...|+.-++..+|..--. ..|-.|+...+. ..+
T Consensus 870 ~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 870 EPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR 947 (1238)
T ss_pred hHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence 888888877 5564 55666555555666777777776655221 112223211111 334
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
++..|--..++.....|++..+|...+...-..+.+.+|.++..++.
T Consensus 948 ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 948 KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455556777777889999999999999999999999888877653
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=2.2e-05 Score=79.74 Aligned_cols=236 Identities=11% Similarity=0.056 Sum_probs=140.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC--CCC-cchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP--VRD-LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (498)
+...+..|+..+...+++++|.++.+... .|+ ...|-.+...+.+.++.+++.-+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 34455566666666666666666666444 232 23343343455555554443332 233333344
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHH
Q 041942 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326 (498)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (498)
.++.-+..+...|... .-+...+..+..+|-+.|+.+++..+|++.++-. +-++.+.|.+...|... ++++|..+
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 4444444444444443 2233466667777777777777777776655544 45666677777777777 78888777
Q ss_pred HhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
+.+. +..|...+++..+.++|.++.. ..|+. ..+..+.+.....-....+..++.-+
T Consensus 172 ~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l--------- 229 (906)
T PRK14720 172 LKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDL--------- 229 (906)
T ss_pred HHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHH---------
Confidence 6553 3446777788888888888888 34543 33333333333322233333333222
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (498)
-..|....+++++..+++.+++.+|.|..+..-++.+|..
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 3356677788888899999998999888888888888873
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=1.1e-06 Score=70.19 Aligned_cols=103 Identities=9% Similarity=-0.010 Sum_probs=87.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHH
Q 041942 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLL 426 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~ 426 (498)
..++++.++ +.|+. +..+...+...|++++|...|+.... ..|+ ...+...|++++|...|++++
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456677776 45654 55567888999999999999999987 5665 333448999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+++|+++.++..++.++...|++++|+..|++..+...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999987554
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.57 E-value=3.3e-05 Score=76.79 Aligned_cols=378 Identities=13% Similarity=0.020 Sum_probs=209.2
Q ss_pred ChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhh
Q 041942 85 NPLDAVFLYTQMEKCSIKPN-KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF 163 (498)
Q Consensus 85 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 163 (498)
+...|+..|-+..+ +.|+ ...|..|-..|....+...|.+.|+..-+.+ ..+...+......|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 35666666655544 2333 2357777777777777777888887777654 345666777777888888888877774
Q ss_pred ccCCCCC-----cchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChh-
Q 041942 164 DGDAKMD-----VVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV- 234 (498)
Q Consensus 164 ~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 234 (498)
-...+.+ ...|....-.|...++..+|+.-|+... +.|...|..+..+|...|++..|.++|.++..-++.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 3222211 1223334445667777777777777665 555667777778888888888888888666542221
Q ss_pred --hHHHHHHHHHhCCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH------hhcC
Q 041942 235 --SWNAMISGYVLCGMNKQALEMFEEMRSV------GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD------MTSG 300 (498)
Q Consensus 235 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~ 300 (498)
.-....-.-+..|.+.+|...+...... +..--..++..+...+...|-..++..++++.++ ....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 1112223344567777777776665421 1111122222222222222222222222211111 1110
Q ss_pred CcchhhHHH-------------------HHHHHH----hcCCH---H---HHHHHHhcCCC--CChhHHHHHHHHHHh--
Q 041942 301 VAKVLHGNA-------------------LIDMYA----KCGSI---E---RAIEVFLGMRD--RDVSTWSTLIGGLAF-- 347 (498)
Q Consensus 301 ~~~~~~~~~-------------------l~~~~~----~~~~~---~---~A~~~~~~~~~--~~~~~~~~l~~~~~~-- 347 (498)
..+...|.. ++..+. +.+.. + -+.+.+-.-.+ .+..+|..++..|.+
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHH
Confidence 111111111 111111 11111 1 01111100000 134556666555544
Q ss_pred ------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHH-------HhhC
Q 041942 348 ------HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHY-------GVHG 413 (498)
Q Consensus 348 ------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y-------~~~g 413 (498)
..+...|+..+++.++ ...+...+...+......|++.-|...|-+-+. ..|. .-+| ....
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~---sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQHCFIKSRF---SEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHhhccchhhhhhhhhhhhhh---ccccchhheeccceeEEecc
Confidence 1233578888888877 444444444444444666777777777755544 3443 2222 2788
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHH--hhhCCCccCCce
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL--MDDSDIKKQPGC 470 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~ 470 (498)
+++.|...|.++..++|.+...|.-.+......|+.-++..+|.. ....+-...+++
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 999999999999999999999999999999999999999998887 333333333433
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.8e-07 Score=53.25 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 364 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
.|+.||..||+.|+.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888773
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.6e-07 Score=53.40 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHhhccC
Q 041942 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166 (498)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (498)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.00086 Score=62.72 Aligned_cols=390 Identities=13% Similarity=0.112 Sum_probs=206.7
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL 146 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (498)
+-|+.+|+.||+-+... .++++.+.++++... .+-....|..-|+.-.+.++++.++.+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 44788999999988666 999999999999763 34456788889999999999999999999998764 356666666
Q ss_pred HHHHHh-cCChhHHHH----hhc------cCCCCCcchHHHHHHH---------HHhcCChHHHHHHHhcCCCCCcc---
Q 041942 147 IYFHAN-CGDLNTASV----LFD------GDAKMDVVAWSSLTAG---------YARRGELSMARSLFDEMPVRDLV--- 203 (498)
Q Consensus 147 ~~~~~~-~g~~~~A~~----~~~------~~~~~~~~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~~~~~--- 203 (498)
++--.+ .|+...+.. .|+ .|...+-..|+..+.. +..+.+++...+++.++......
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 553332 233333221 121 1222333445554432 33344566677777777611111
Q ss_pred -------hHHHHHHHH-------HhcCChHHHHHHHhhCCC------CChh---------------hHHHHHHHHHhCCC
Q 041942 204 -------SWNVMITGY-------AKQGEMEKANELFNEVPK------RDVV---------------SWNAMISGYVLCGM 248 (498)
Q Consensus 204 -------~~~~l~~~~-------~~~~~~~~A~~~~~~~~~------~~~~---------------~~~~l~~~~~~~g~ 248 (498)
.|..=|+.. -+...+..|.++++++.. .+.. .|-.+|.-=...+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111111110 112234444444444331 0000 01111111111000
Q ss_pred h--------HHHHHHHHHH-HhCCCCCCHHH-HHHHHHHHhc----cCC-------chHHHHHHHHHHHhhcCCcchhhH
Q 041942 249 N--------KQALEMFEEM-RSVGERPDDVT-MLSLLTACAD----LGD-------LEVGKKVHCTLLDMTSGVAKVLHG 307 (498)
Q Consensus 249 ~--------~~a~~~~~~m-~~~g~~p~~~~-~~~li~~~~~----~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 307 (498)
- ....-++++. .-.+..|+... +...+..-++ .|+ .+++..+++..+... ...+..+|
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l-~~~~~~Ly 331 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL-LKENKLLY 331 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 0 0011111111 11122222111 0111111111 001 233333442222111 11122222
Q ss_pred HHHHHHHHhcC---CHHHHHHHHhcCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 041942 308 NALIDMYAKCG---SIERAIEVFLGMRD----RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVA 379 (498)
Q Consensus 308 ~~l~~~~~~~~---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 379 (498)
..+.+.--..- ..+....+++++.. .-..+|..++..-.+......|..+|.++.+.+..+ .....+.++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 22221111111 13333344443332 123467777777777788888888888888877766 56667777766
Q ss_pred HhhcCCHHHHHHHHHHhHHhcCCCCC-hhHH----HhhCChHHHHHHHHHHHcc--CCC-CCchHHHHHHHHHhCCCchH
Q 041942 380 CSHAGKVEEGKKYFKLMRDEYNIEPN-IRHY----GVHGDVELGRLANKRLLNM--RKD-ESGDYVLLSNIYASRGEWNR 451 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y----~~~g~~~~a~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~ 451 (498)
++. ++..-|.++|+.-.+.+|-.|. +..| ...++-..++.+|++++.. .|+ ...+|..++.--..-|+...
T Consensus 412 ~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 654 7788888888887776666665 2222 2778888888888888865 332 23688888888888888888
Q ss_pred HHHHHHHhhhC
Q 041942 452 VEKVRKLMDDS 462 (498)
Q Consensus 452 A~~~~~~m~~~ 462 (498)
++++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 88888777553
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=2e-05 Score=79.17 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------- 405 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------- 405 (498)
++..+-.|.....+.|++++|..+|+...+ +.|+ ......+...+.+.+++++|....++... ..|+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466667777777777777777777777777 5665 44555566777777777777777777765 4555
Q ss_pred -hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 406 -IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 406 -~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.......|.+++|..+|++++..+|+++.++..++.++...|+.++|...|++..+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222227777777777777777777777777777777777777777777777777543
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=6.6e-06 Score=76.90 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=67.2
Q ss_pred HHHHHHHHHH-HCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHhh-------CChHHHHHHHH
Q 041942 353 ESIAMFREMQ-RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYGVH-------GDVELGRLANK 423 (498)
Q Consensus 353 ~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~~-------g~~~~a~~~~~ 423 (498)
...++|-++. ..+..+|+.....|--.|--.|++++|...|+.+.. ++|+ ...|+|. .+.++|+..|+
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 3334444433 333335555555555556666777777777777655 5665 3334333 35677777777
Q ss_pred HHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+++++.|.-..++..|+-.|+..|.+++|.+.|-+.+
T Consensus 489 rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 489 RALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777888888888888888888888888887766654
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=2.3e-05 Score=69.02 Aligned_cols=183 Identities=10% Similarity=0.000 Sum_probs=110.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCC--CC-h---hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 041942 201 DLVSWNVMITGYAKQGEMEKANELFNEVPK--RD-V---VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD--VTML 272 (498)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~ 272 (498)
....+..+...+...|++++|...|+++.+ |+ . .++..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 445566667777777888888877776653 22 1 35566677777778888888888777755321111 1333
Q ss_pred HHHHHHhcc--------CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHH
Q 041942 273 SLLTACADL--------GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344 (498)
Q Consensus 273 ~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 344 (498)
.+..++... |+.+.|.+.++..+...+..+ .....+..... ..... ......+...
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~~~~----~~~~~----------~~~~~~~a~~ 175 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE--YAPDAKKRMDY----LRNRL----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHH----HHHHH----------HHHHHHHHHH
Confidence 344444433 566677777755554433221 11111111100 00000 0111245667
Q ss_pred HHhCCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 345 LAFHGFAEESIAMFREMQRLKV-RP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
|...|++++|+..+++..+..- .| ....+..+..++.+.|++++|..+++.+...
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8889999999999999887421 12 3567888889999999999999998888763
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=3.1e-05 Score=74.58 Aligned_cols=211 Identities=16% Similarity=0.084 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChH
Q 041942 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEME 219 (498)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 219 (498)
.-..+...+...|-...|..+|++. ..|...+.+|+..|+..+|..+..+.. +||+..|..+.+......-++
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 3345556666666666666666654 235555566666666666666555444 556666666666655555566
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc
Q 041942 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299 (498)
Q Consensus 220 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 299 (498)
+|.++++....+ +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.| .... ..
T Consensus 475 kawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF-~rcv-tL 548 (777)
T KOG1128|consen 475 KAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF-HRCV-TL 548 (777)
T ss_pred HHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH-HHHh-hc
Confidence 666666554322 22222222334566666666666555443 334455555555556666666666666 2222 12
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
.+-+...||.+-.+|.+.++-.+|...+.+..+ .+...|...+....+.|.+++|++.+.++.+
T Consensus 549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 233455566666666666666666666665553 2334455555555666666666666666544
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=0.00014 Score=67.09 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=137.4
Q ss_pred CCChHHHHHhcccCC------CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHH
Q 041942 52 PGAINYAHKMFVKIT------EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 125 (498)
..++.++...-+.++ .|+...+...+.+......-..+..++-+-.+. .-...-|...+. ....|+.+.|+
T Consensus 250 ~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~ 326 (484)
T COG4783 250 EERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEAL 326 (484)
T ss_pred hhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHH
Confidence 456677777777776 456666777777655443333333333322221 122334555444 45678999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC--CC-cchHHHHHHHHHhcCChHHHHHHHhcCC---C
Q 041942 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK--MD-VVAWSSLTAGYARRGELSMARSLFDEMP---V 199 (498)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~ 199 (498)
..++.+.+.- +-|+..+......+.+.++.++|.+.+++... |+ ...+-.+..++.+.|++.+|+..++... +
T Consensus 327 ~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 327 KLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999988763 45677777888899999999999999988665 33 4456667788999999999999998887 6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 263 (498)
.|+..|..|..+|...|+..++... ....|...|++++|...+....+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A--------------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLA--------------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHH--------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 6788999999999999988777653 3456778889999888888777553
No 123
>PLN02789 farnesyltranstransferase
Probab=98.37 E-value=0.00018 Score=65.63 Aligned_cols=217 Identities=12% Similarity=0.038 Sum_probs=134.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC-CchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDD-VTMLSLLTACADLG-DLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 236 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
+..+-..+...++.++|+.++.++++. .|+. .+|+.--.++...| +++++...+++.+.... .+..+|+.....
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--knyqaW~~R~~~ 115 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP--KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--cchHHhHHHHHH
Confidence 334444555667777888887777755 3433 34444444444555 46777777755555443 233344433333
Q ss_pred HHhcCC--HHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc---CC
Q 041942 314 YAKCGS--IERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA---GK 385 (498)
Q Consensus 314 ~~~~~~--~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~ 385 (498)
+.+.|+ .+++..+++++.+ .|..+|+...-++...|+++++++.++++++.+. -|...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccc
Confidence 444454 2566777766653 4667888888888888889999999999888542 3455666555444443 22
Q ss_pred H----HHHHHHHHHhHHhcCCCCC---hhHHH-----h----hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC--
Q 041942 386 V----EEGKKYFKLMRDEYNIEPN---IRHYG-----V----HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG-- 447 (498)
Q Consensus 386 ~----~~a~~~~~~~~~~~~~~p~---~~~y~-----~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 447 (498)
. ++..+...+++. ..|+ +-.|. . .++..+|...+.++.+.+|.++.+...|+..|....
T Consensus 195 ~~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 195 LEAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQP 271 (320)
T ss_pred ccccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhcc
Confidence 2 456666656655 3444 22222 2 244566888888888888999999999999998743
Q ss_pred ----------------CchHHHHHHHHhh
Q 041942 448 ----------------EWNRVEKVRKLMD 460 (498)
Q Consensus 448 ----------------~~~~A~~~~~~m~ 460 (498)
..++|.++++.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 272 TAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred chhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2367888888883
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00057 Score=58.11 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCH-HHHHHH
Q 041942 317 CGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV-EEGKKY 392 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~ 392 (498)
.+.+.+|.-+|++|.+ |++.+.+-...++...|++++|..++++...+. .-++.+...++-+-...|.. +...+.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3456667777777764 455566666677777788888888887777753 23455555555444444543 444456
Q ss_pred HHHhHH
Q 041942 393 FKLMRD 398 (498)
Q Consensus 393 ~~~~~~ 398 (498)
+.+++.
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 666655
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=6.7e-05 Score=63.53 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=90.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCH
Q 041942 310 LIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 386 (498)
+-..+...|+-+....+...... .|....+..+....+.|++..|+..+++..... ++|...|+.+.-+|.+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 34444445555555555544321 234444556666666667777776666666532 34566666666666777777
Q ss_pred HHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHH
Q 041942 387 EEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
+.|..-+.+..+-.+-.|. ...|.-.|+++.|+.++..+....+.|..+-..++.+....|++++|..+...
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7776666666663333333 23333666777777777766666666777788888888888888887776543
No 126
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=1.7e-05 Score=73.63 Aligned_cols=121 Identities=15% Similarity=0.119 Sum_probs=72.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 041942 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 389 (498)
|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.++.. +-+...+......+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl-------- 245 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL-------- 245 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH--------
Confidence 33444444555555555555554444444445555555555555555555554421 112222222223333
Q ss_pred HHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 390 KKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 390 ~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+.++++.|..+.+++.+..|++..+|..|+.+|...|++++|+..++.+.
T Consensus 246 ---------------------~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 ---------------------SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ---------------------hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 45555666666666666789999999999999999999999999999886
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00023 Score=59.89 Aligned_cols=185 Identities=16% Similarity=0.134 Sum_probs=125.1
Q ss_pred CChHHHHHHHHHHH---hCC-CCCCHH-HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHH
Q 041942 247 GMNKQALEMFEEMR---SVG-ERPDDV-TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321 (498)
Q Consensus 247 g~~~~a~~~~~~m~---~~g-~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (498)
.+.++..+++..++ ..| ..++.. .|..++-+....|+.+.|...++.+..+.+..+.+.-+. .-.+...|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lk--am~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLK--AMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHhhchh
Confidence 45666777766665 233 445544 344555666777888888888855444442222222221 22244578888
Q ss_pred HHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 322 RAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 322 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+|.++++.+.+. |..++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888888887753 4556666666677778878888888777764 567888899999999999999999998888877
Q ss_pred hcCCCCChhHHH-----------hhCChHHHHHHHHHHHccCCCCCchHH
Q 041942 399 EYNIEPNIRHYG-----------VHGDVELGRLANKRLLNMRKDESGDYV 437 (498)
Q Consensus 399 ~~~~~p~~~~y~-----------~~g~~~~a~~~~~~~~~~~~~~~~~~~ 437 (498)
++|....|. -..+++-++++|.+++++.|.+...+.
T Consensus 183 ---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 183 ---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred ---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 566644433 444778889999999999886654433
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.29 E-value=7.5e-05 Score=63.22 Aligned_cols=113 Identities=9% Similarity=0.164 Sum_probs=60.6
Q ss_pred CCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HhhcCC--HHHHH
Q 041942 318 GSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVA-CSHAGK--VEEGK 390 (498)
Q Consensus 318 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~-~~~~g~--~~~a~ 390 (498)
++.+++...++...+ .|...|..+...|...|++++|...|++..+ +.| +...+..+..+ +...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 334444444443321 2455666666666666666666666666666 334 34444444444 244454 36666
Q ss_pred HHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 391 KYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 391 ~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
+++++..+ ..|+ ...+...|++++|...|++++++.|++..-
T Consensus 131 ~~l~~al~---~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 131 EMIDKALA---LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHH---hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 66666655 3333 222336666666666666666666665443
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=1.3e-05 Score=63.68 Aligned_cols=90 Identities=14% Similarity=0.081 Sum_probs=50.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
..+...+...|++++|.+.++.+....+..|. ...|...|++++|...++++++.+|+++..+..++.+|...|+
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 33344444455555555555554441111111 2222245555555555555555667777777777777777777
Q ss_pred chHHHHHHHHhhhCC
Q 041942 449 WNRVEKVRKLMDDSD 463 (498)
Q Consensus 449 ~~~A~~~~~~m~~~~ 463 (498)
+++|+..+++..+..
T Consensus 101 ~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 101 PESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777776654
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=6.8e-05 Score=69.08 Aligned_cols=111 Identities=16% Similarity=0.151 Sum_probs=77.8
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCCh
Q 041942 345 LAFHGFAEESIAMFREMQRLKVRPTEITFV-GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDV 415 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~ 415 (498)
+...|++++|+..++.++.. .|+...|. .....+.+.++.++|.+.++++.. ..|+ ..+|.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence 44567777777777777763 45544443 344667777777777777777766 4555 4455577777
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
.+|.+.++.....+|+|+..|..|+.+|...|+..+|....-++.
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 777777777777788888888888888888777777766655554
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0044 Score=58.20 Aligned_cols=416 Identities=12% Similarity=0.096 Sum_probs=246.9
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EP-DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF 110 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 110 (498)
+-|...|+.||+ -+.. ..++++++.++++. .| ....|..-|..-....+++....+|.+.+..- .+...|..
T Consensus 17 P~di~sw~~lir-e~qt--~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIR-EAQT--QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHH-HHcc--CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 678999999998 5554 49999999999997 34 46689999999999999999999999998753 45667777
Q ss_pred HHHHhhcc-cchhh----HHHHHHHH-HHhCCCCC-hHHHHHHHHH---------HHhcCChhHHHHhhccCCCCCcc--
Q 041942 111 VLKACTRL-LYRNM----GFCVHGKI-VKYGFEFN-RFVRNSLIYF---------HANCGDLNTASVLFDGDAKMDVV-- 172 (498)
Q Consensus 111 li~~~~~~-~~~~~----a~~~~~~~-~~~~~~~~-~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~-- 172 (498)
-|..--+. ++... ..+.|+-. .+.|..+. ...|+..+.. |....+++...++++++......
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 66643322 33333 23333333 34454443 3466666554 34445677778888876653222
Q ss_pred --hHHHHHH-----------HH--HhcCChHHHHHHHhcCC---------CC---Ccch---------HHHHHHHHHhcC
Q 041942 173 --AWSSLTA-----------GY--ARRGELSMARSLFDEMP---------VR---DLVS---------WNVMITGYAKQG 216 (498)
Q Consensus 173 --~~~~l~~-----------~~--~~~~~~~~A~~~~~~~~---------~~---~~~~---------~~~l~~~~~~~~ 216 (498)
.|+-... -+ -+...+-.|.++++++. .| ..-| |..+|..- +.+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcC
Confidence 2321110 00 12234555666655544 00 0001 22222110 000
Q ss_pred ChH---------HHHHHHhhCCC---CChhhHHHHHHHHHhCCC--------------hHHHHHHHHHHHhCCCCCCHHH
Q 041942 217 EME---------KANELFNEVPK---RDVVSWNAMISGYVLCGM--------------NKQALEMFEEMRSVGERPDDVT 270 (498)
Q Consensus 217 ~~~---------~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~--------------~~~a~~~~~~m~~~g~~p~~~~ 270 (498)
.+. ...-.+++... -.+..|.--..-+...++ .+++..+++..+..-..-+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000000000 011122222222222233 4555566665554333334444
Q ss_pred HHHHHHHH---hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHH
Q 041942 271 MLSLLTAC---ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----RDVSTWSTLI 342 (498)
Q Consensus 271 ~~~li~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~ 342 (498)
|..+..-- ......+....++++........|+. +|..+++.-.+...+..|..+|.+..+ .++..+++++
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 44333221 12223666777776666666655554 456788888888899999999998874 2677888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--hhHHH-------hhC
Q 041942 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYG-------VHG 413 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~-------~~g 413 (498)
..|| .++..-|.++|+--.+. ..-++.-....+.-++..++-..+..+|+++.+ .++.|+ ...|. ..|
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~-s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT-SVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh-ccCChhhhHHHHHHHHHHHHhcc
Confidence 8776 67889999999875553 333445556677888899999999999999999 477777 34444 678
Q ss_pred ChHHHHHHHHHHHccCCCCC----chHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 414 DVELGRLANKRLLNMRKDES----GDYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
++....++-++.....|.+. ..-..+++-|.-.+.+..-..-++.|
T Consensus 487 dL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred cHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 88888888888887777432 23455566666666665555555554
No 132
>PLN02789 farnesyltranstransferase
Probab=98.24 E-value=0.00023 Score=64.88 Aligned_cols=180 Identities=8% Similarity=0.041 Sum_probs=129.4
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC-CHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCH--H
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG-SIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFA--E 352 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~ 352 (498)
...++.++|...+.+.+...+. +...|+....++...| ++++++..++++.+ .+..+|+...-.+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3456778888888666655532 3334444445555666 57999999988774 3556777666556666653 6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHH-------hh---CCh----HH
Q 041942 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYG-------VH---GDV----EL 417 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~-------~~---g~~----~~ 417 (498)
+++.+++++++.+ +-|..+|.....++...|+++++.+.++++++ ..|. ...|. .. |.. ++
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 7899999999843 23588899888899999999999999999988 2333 22222 21 222 46
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhC----CCchHHHHHHHHhhhCCC
Q 041942 418 GRLANKRLLNMRKDESGDYVLLSNIYASR----GEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~ 464 (498)
+..+..+++..+|+|..+|+.+..++... ++..+|.+.+.+..+.++
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 77888899999999999999999999884 455678888888766443
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.1e-06 Score=49.71 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN 104 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~ 104 (498)
.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
No 134
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.00011 Score=62.24 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCC
Q 041942 144 NSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGE 217 (498)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 217 (498)
..+-..+.-.|+-+....+...... .|....+..+....+.|++..|+..|++.. ++|...|+.+.-+|.+.|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 3344445555555555544443221 233333445555566666666666665555 4555556666666666666
Q ss_pred hHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 218 MEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 218 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
.+.|..-|.+..+ .+....+.+...|.-.|+.+.|..++......+ .-|...-..+.......|+++.|..+.
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666555555443 344455555555555666666666665555443 224444444555555555555555554
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.19 E-value=2.8e-06 Score=48.74 Aligned_cols=33 Identities=30% Similarity=0.636 Sum_probs=26.3
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP 103 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p 103 (498)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888777776
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.13 E-value=0.00066 Score=69.34 Aligned_cols=234 Identities=11% Similarity=0.042 Sum_probs=131.0
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhh-HHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFT-FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 145 (498)
+.+...|..|+..+...+++++|.++.+...+. .|+... |-.+...+.+.++...+..+ .+... .+...-|+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ 101 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAI 101 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhH
Confidence 445667788888888888888888888866653 454433 32332344455554444433 22221 111111111
Q ss_pred HHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHH
Q 041942 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKAN 222 (498)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 222 (498)
+-..|...|++- .+..++..+..+|-+.|+.++|...++++. +.|+.+.|.+...|... ++++|.
T Consensus 102 ve~~~~~i~~~~-----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 102 VEHICDKILLYG-----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred HHHHHHHHHhhh-----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 111111111111 123356667777778888888888888777 55567777778878777 888887
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc
Q 041942 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302 (498)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (498)
+++.+. +..|...+++.++.++|.++.... |+... .-..+.+......+..-
T Consensus 170 ~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~--~~d~d---------------~f~~i~~ki~~~~~~~~ 221 (906)
T PRK14720 170 TYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHYN--SDDFD---------------FFLRIERKVLGHREFTR 221 (906)
T ss_pred HHHHHH-----------HHHHHhhhcchHHHHHHHHHHhcC--cccch---------------HHHHHHHHHHhhhccch
Confidence 777664 233666667777777777777552 22211 11222212222222223
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLA 346 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 346 (498)
-..++..+-..|-..++++++..+|+.+.+ .|.....-++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 334445566666677777777777776653 34555556666655
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=7.1e-06 Score=47.38 Aligned_cols=33 Identities=39% Similarity=0.674 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 369 (498)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
No 138
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.09 E-value=6.3e-05 Score=59.26 Aligned_cols=82 Identities=11% Similarity=-0.005 Sum_probs=56.1
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH--------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCch
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (498)
-+...|++++|..+|+.+.. +.|....|. ..|++++|...|.++..++|+|+..+..++.++...|+.+
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 34445555555555555544 344422222 5566666666777777788899999999999999999999
Q ss_pred HHHHHHHHhhhCC
Q 041942 451 RVEKVRKLMDDSD 463 (498)
Q Consensus 451 ~A~~~~~~m~~~~ 463 (498)
.|.+.|+..+...
T Consensus 121 ~A~~aF~~Ai~~~ 133 (157)
T PRK15363 121 YAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876543
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=8.3e-06 Score=46.72 Aligned_cols=33 Identities=30% Similarity=0.623 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 266 (498)
.+|+.++.+|++.|+++.|..+|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=9e-05 Score=68.90 Aligned_cols=122 Identities=12% Similarity=0.138 Sum_probs=93.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 041942 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151 (498)
Q Consensus 72 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (498)
.-..|+..+...++++.|+.+|+++.+.. |+ ....+++.+...++..+|.+++++.++.. +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666667788889999999888753 44 44456777777778888888888888653 446677777778888
Q ss_pred hcCChhHHHHhhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 041942 152 NCGDLNTASVLFDGDAK--M-DVVAWSSLTAGYARRGELSMARSLFDEMP 198 (498)
Q Consensus 152 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 198 (498)
..++.+.|+.+.++... | +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88889999888887554 3 45588889999999999999998888887
No 141
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.00 E-value=0.00042 Score=69.87 Aligned_cols=171 Identities=9% Similarity=0.029 Sum_probs=126.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCC-cchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHH
Q 041942 169 MDVVAWSSLTAGYARRGELSMARSLFDEMP--VRD-LVSWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSWNAMISG 242 (498)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 242 (498)
.++..+..|.....+.|.+++|..+++... .|+ ......++.++.+.+++++|...+++... | +......+..+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 357778888899999999999999999888 444 45777788899999999999999998875 3 45677778888
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHH
Q 041942 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322 (498)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (498)
+...|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|++.+...+ +....|+.++ +++..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~--~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG--DGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--cchHHHHHHH------HHHHH
Confidence 999999999999999999743 34577888888999999999999999977777665 3334433332 33444
Q ss_pred HHHHHhcCCC------CC--hhHHHHHHHHHHhC
Q 041942 323 AIEVFLGMRD------RD--VSTWSTLIGGLAFH 348 (498)
Q Consensus 323 A~~~~~~~~~------~~--~~~~~~l~~~~~~~ 348 (498)
-...++++.. .+ +.+...+|..|.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 235 DLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 4556666542 12 23455566656554
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=6.3e-05 Score=65.00 Aligned_cols=91 Identities=14% Similarity=0.220 Sum_probs=63.8
Q ss_pred HHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 041942 314 YAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 389 (498)
..+.+++++|+..|.+..+ .|...|..-..+|.+.|.++.|++-.+..+. +.|. ..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456777777777776553 3566677777777777777777777777776 5565 56777777777777777777
Q ss_pred HHHHHHhHHhcCCCCChhHH
Q 041942 390 KKYFKLMRDEYNIEPNIRHY 409 (498)
Q Consensus 390 ~~~~~~~~~~~~~~p~~~~y 409 (498)
++.|++..+ +.|+-..|
T Consensus 169 ~~aykKaLe---ldP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALE---LDPDNESY 185 (304)
T ss_pred HHHHHhhhc---cCCCcHHH
Confidence 777777755 67776655
No 143
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=0.012 Score=56.97 Aligned_cols=235 Identities=11% Similarity=0.071 Sum_probs=135.6
Q ss_pred CCCHhhHHHHHHHhhcccchhhHHHHHHHHHH-hCCCC--------ChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcc
Q 041942 102 KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK-YGFEF--------NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172 (498)
Q Consensus 102 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 172 (498)
.|.+..|..+.......-.++.|+..|-+... .|++. +...-.+=+.+ --|++++|+++|-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 57788888888777776777777776655543 12211 11111122222 24788888888876666553
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCC--CCC---cchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 041942 173 AWSSLTAGYARRGELSMARSLFDEMP--VRD---LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247 (498)
Q Consensus 173 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 247 (498)
.+..+.+.|+|-...++++.-. ..| ...|+.+.+.+.....+++|.+.|..-... ...+.++.+..
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le 836 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLE 836 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHH
Confidence 3456667777777777776544 111 246777777777777777777777654321 12444555555
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 041942 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (498)
++++-+.+...+ +-+....-.+...+.+.|.-++|.+.|- + .+ .| .+.+..|...++|.+|.++-
T Consensus 837 ~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~L---r-~s-~p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 837 LFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYL---R-RS-LP-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHH---h-cc-Cc-----HHHHHHHHHHHHHHHHHHHH
Confidence 555444433332 3444555666677777777777777651 1 11 11 24556677777788887777
Q ss_pred hcCCCCChhHHH--------------HHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 328 LGMRDRDVSTWS--------------TLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 328 ~~~~~~~~~~~~--------------~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
++..-|.+.+.- --|..+.+.|++-.|.+++.+|-+
T Consensus 902 q~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 902 QRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 766544332211 123345556666666666666643
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.94 E-value=0.00056 Score=54.87 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=63.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc--hhhHHHH
Q 041942 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPD---DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK--VLHGNAL 310 (498)
Q Consensus 236 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 310 (498)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+..+... ..+. ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 44444444 3666666766677666543 122 1222334455666677777777774444433 1221 1122234
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHHHHHHHhCCCHHHHHHHHHH
Q 041942 311 IDMYAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHGFAEESIAMFRE 360 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (498)
...+...|++++|+..++.+..+ ....+.....+|...|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555566666666666554332 233444555566666666666666554
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.94 E-value=0.00032 Score=56.30 Aligned_cols=123 Identities=12% Similarity=0.098 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCCh------hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDV------STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--EITFVGVL 377 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~ 377 (498)
.|..++..+ ..++...+...++.+....+ ...-.+...+...|++++|...|+........|+ ......|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 36666666666666553211 2223344556667777777777777766542222 12333455
Q ss_pred HHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHH
Q 041942 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (498)
..+...|++++|...++.... .+..+..+..++.+|...|++++|...|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~------------------------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD------------------------------EAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC------------------------------cchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666777777766644322 23345678889999999999999999998
Q ss_pred Hh
Q 041942 458 LM 459 (498)
Q Consensus 458 ~m 459 (498)
+.
T Consensus 143 ~A 144 (145)
T PF09976_consen 143 KA 144 (145)
T ss_pred Hh
Confidence 75
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=0.00018 Score=55.44 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~ 411 (498)
.++..++..+...|++++|.+.|.++.... |+ ...+..+..++.+.|+++.|...++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------- 67 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK------------- 67 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH-------------
Confidence 345666677777788888888887777632 32 23455566777777777777777777665
Q ss_pred hCChHHHHHHHHHHHccCCCC---CchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 412 HGDVELGRLANKRLLNMRKDE---SGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
..|++ +.++..++.++.+.|++++|...++++.+..
T Consensus 68 ----------------~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 68 ----------------KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ----------------HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 23332 4557777777777777777777777777654
No 147
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.92 E-value=0.00028 Score=55.92 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
..+...+...|++++|.+.|+.+.+ .+...|..+...+...|++++|..++++..+.+ +.+...+..+...+...|
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcC
Confidence 3444555555555555555554432 234455555555555555555555555555432 223444444445555555
Q ss_pred CHHHHHHHHHHhHH
Q 041942 385 KVEEGKKYFKLMRD 398 (498)
Q Consensus 385 ~~~~a~~~~~~~~~ 398 (498)
++++|...++...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 148
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=2.2e-05 Score=53.04 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=49.7
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.|...|++++|...|+++++.+|+++.++..++.++...|++++|+..|+++.+..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45578899999999999999999999999999999999999999999999997644
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.88 E-value=0.00021 Score=52.20 Aligned_cols=80 Identities=15% Similarity=0.033 Sum_probs=68.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHhhccc--------chhhHHHHHHHHHHhCCCCChHHH
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSI-KPNKFTFSFVLKACTRLL--------YRNMGFCVHGKIVKYGFEFNRFVR 143 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 143 (498)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. ++...+.+|++|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566677788999999999999999999 899999999999987652 345678899999999999999999
Q ss_pred HHHHHHHHh
Q 041942 144 NSLIYFHAN 152 (498)
Q Consensus 144 ~~l~~~~~~ 152 (498)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.88 E-value=0.0011 Score=59.97 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=11.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+..+...+.+.|++++|.++|+++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444455555555555554443
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.87 E-value=0.00042 Score=53.39 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHH
Q 041942 305 LHGNALIDMYAKCGSIERAIEVFLGMRD--RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----EITFV 374 (498)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~ 374 (498)
.++..++..+.+.|++++|.+.|..+.+ |+ ...+..+..++...|++++|...|+++.... |+ ...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHH
Confidence 3455678888999999999999998864 32 3467778999999999999999999998743 33 45677
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 375 GVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+..++.+.|++++|...++++.+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHH
Confidence 777888889999999999998877
No 152
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.018 Score=55.85 Aligned_cols=322 Identities=13% Similarity=0.079 Sum_probs=160.4
Q ss_pred hHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh-CCCCCCHh--------hHHHHHHHhhcccchhhHH
Q 041942 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CSIKPNKF--------TFSFVLKACTRLLYRNMGF 125 (498)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~--------~~~~li~~~~~~~~~~~a~ 125 (498)
+++|.+..+. .|.+..|..|.....+.-.++.|...|-+... .|++.-.. .-..=+. +--|.+++|+
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhh
Confidence 3444444333 46666777777766666666667666655533 12211111 1111111 2237788888
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCC-----cchHHHHHHHHHhcCChHHHHHHHhcCC--
Q 041942 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD-----VVAWSSLTAGYARRGELSMARSLFDEMP-- 198 (498)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 198 (498)
+++-+|-+.++ .+..+.+.||+-.+.++++.....+ ...|+.+...+.....|++|.+.|..-.
T Consensus 755 k~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 88777765532 3556667777777777776543321 2346666666666666666666655432
Q ss_pred -----------------------CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH
Q 041942 199 -----------------------VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255 (498)
Q Consensus 199 -----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 255 (498)
+.+....-.+.+++.+.|.-++|.+.|-+-..|. +-+..|...++|.+|.++
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666666655554444332 223445555555555555
Q ss_pred HHHHHhCCCCCCHHHHH--------------HHHHHHhccCCchHHHHHHHHHHHhhc--CCcchh-----hHHH-HHHH
Q 041942 256 FEEMRSVGERPDDVTML--------------SLLTACADLGDLEVGKKVHCTLLDMTS--GVAKVL-----HGNA-LIDM 313 (498)
Q Consensus 256 ~~~m~~~g~~p~~~~~~--------------~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~-----~~~~-l~~~ 313 (498)
-+... -|...|+. ..|..+.+.|+.-.|.+++.++.+... ..|-.. +..+ |+.-
T Consensus 901 aq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~ 976 (1189)
T KOG2041|consen 901 AQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN 976 (1189)
T ss_pred HHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 44332 22222211 123334455554444444434433221 112111 1111 1111
Q ss_pred H----------HhcCCHHHHHHHHhcCCC-----------CChhHHH--HHHHHHHhCCCHHHHHHHHHHHHH-CCCCCC
Q 041942 314 Y----------AKCGSIERAIEVFLGMRD-----------RDVSTWS--TLIGGLAFHGFAEESIAMFREMQR-LKVRPT 369 (498)
Q Consensus 314 ~----------~~~~~~~~A~~~~~~~~~-----------~~~~~~~--~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~ 369 (498)
+ -+.|..++|.++++...- +....|. .|..-....|..+.|++.--.+.+ ..+-|.
T Consensus 977 h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP 1056 (1189)
T KOG2041|consen 977 HRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPP 1056 (1189)
T ss_pred HHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCH
Confidence 1 134666777766654331 1223344 344445566778877765444433 125566
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...|..+.-+-+....+-..-+.|-++..
T Consensus 1057 ~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1057 AEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 77777766655555555555555555444
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.85 E-value=0.041 Score=55.18 Aligned_cols=208 Identities=13% Similarity=0.105 Sum_probs=103.5
Q ss_pred CCChHHHHHhcccCC--CCChhhHHHHHHHH--hccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHH
Q 041942 52 PGAINYAHKMFVKIT--EPDTFMYNTIIRGS--AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 127 (498)
.+++..|.+....+. .||. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|.+.++.+++..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 355555555555544 2332 233333332 4556666666666555443322 555666666666666666666666
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHhcCChhH----HHHhhccCCCCCcchHHHHHHHHHhcCC---------hHHHHHHH
Q 041942 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNT----ASVLFDGDAKMDVVAWSSLTAGYARRGE---------LSMARSLF 194 (498)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~ 194 (498)
|+..... .|+......+..+|++.+.+.+ |+++++...+.--.-|+.+--.+..... .--|.+.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 6666553 3445555555555555554433 3444443333322233322111111111 11233333
Q ss_pred hcCCCCC--cch---HHHHHHHHHhcCChHHHHHHHhh-----CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 041942 195 DEMPVRD--LVS---WNVMITGYAKQGEMEKANELFNE-----VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 195 ~~~~~~~--~~~---~~~l~~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 263 (498)
+.+...+ ..+ ...-...+...|++++|++++.. ....+...-+.-+..+...++|.+..++-.++...|
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 3333111 110 11112334567778888887732 122344444556777778888888888888888775
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=2.4e-05 Score=43.66 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=23.9
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI 101 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 101 (498)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.84 E-value=0.00054 Score=56.84 Aligned_cols=123 Identities=11% Similarity=0.050 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRD--RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLV 378 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~ 378 (498)
.+..+...+...|++++|...|++..+ ++ ...+..+...+...|++++|...+++..+ ..|+ ...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 344555566666777777776665542 21 34677788888889999999999998888 4454 556666677
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
.+...|+...+..-++.... .+++|.+.+++++..+|++ +..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------LFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------HHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 77787877766665555443 3677888999999888887 5555555555554
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0085 Score=54.19 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHhccCCchHHHHHHHHHHHhhc-CC--cchh
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGER-----PDDV-TMLSLLTACADLGDLEVGKKVHCTLLDMTS-GV--AKVL 305 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~ 305 (498)
++..+...+.+.|++++|..+|++....-.. .+.. .+...+-++...|+.-.|...+++.....+ +. ....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4556778888999999999999988754322 1221 233344456677888888888866554432 22 2234
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHhcCCCCChhHHHHHH
Q 041942 306 HGNALIDMYAK--CGSIERAIEVFLGMRDRDVSTWSTLI 342 (498)
Q Consensus 306 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~l~ 342 (498)
+...|+.++-. ...++.|+.-|+.+.+-|..--..|+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 44556666654 34577888888888777665444444
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=6.3e-05 Score=65.00 Aligned_cols=104 Identities=20% Similarity=0.173 Sum_probs=84.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHH-------Hhh
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHY-------GVH 412 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y-------~~~ 412 (498)
..-+.+.++|++|+..|.++++ +.|+ .+-|..=..+|++.|.++.|++-.+..+. +.|. ...| ...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 3456778899999999999999 6664 66677778899999999999998888877 7777 3344 477
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCch
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (498)
|++++|.+.|+++++++|++...+..|-.+--+.++..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999988888877766666555
No 158
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0028 Score=53.64 Aligned_cols=182 Identities=14% Similarity=0.071 Sum_probs=128.1
Q ss_pred CCchHHHHHHHHHHHhhc---CCcch-hhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHH---HHHHHHHhCCCHHHH
Q 041942 282 GDLEVGKKVHCTLLDMTS---GVAKV-LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS---TLIGGLAFHGFAEES 354 (498)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~---~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A 354 (498)
.+.++..+++.++....+ ..++. ..|..++-+....|+.+.|...++.+...-+.++. .-...+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 345555555544433222 22232 23445555667789999999998887642222211 112234457899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccC
Q 041942 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMR 429 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~ 429 (498)
+++|+...+.+ +.|..++..=+...-..|+.-+|++-+....+.+--.++ .+.|...|++++|.-.+++++=..
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 99999999865 445677776666667788888898888887775444443 666779999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCC---CchHHHHHHHHhhhCCC
Q 041942 430 KDESGDYVLLSNIYASRG---EWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 464 (498)
|-++..+..++..+.-.| +..-|.++|.+..+...
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999987776 56678888988877655
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00029 Score=61.39 Aligned_cols=105 Identities=13% Similarity=0.074 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------hhHHH-hhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-------IRHYG-VHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~y~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
|...|..|...|...|+.+.|...|....+..|-+|+ +.+|. ....-.++..++++++.++|.|..+...|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4667777777777777777777777777664444444 11222 222456788899999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHhhhCCCccCCceeEE
Q 041942 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473 (498)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 473 (498)
..+...|++.+|...++.|.+....-.|..+.|
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 999999999999999999999877555555443
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00027 Score=51.68 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCCh
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV 415 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~ 415 (498)
++..+...+...|++++|...++++.+. .|+ ...+..+...+...|++++|.+.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------------- 60 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKA------------------- 60 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3556667777778888888888887763 343 344555555555555555555555554
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
....|.+..++..++.++...|++++|...+++..+.+
T Consensus 61 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 61 ----------LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred ----------HhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 44566666788899999999999999999998876543
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.76 E-value=5e-05 Score=54.37 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHH
Q 041942 348 HGFAEESIAMFREMQRLKVR-PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426 (498)
Q Consensus 348 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~ 426 (498)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..++++ .+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---------------------------- 52 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---------------------------- 52 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT----------------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC----------------------------
Confidence 46778888888888774321 1334455567777888888888777766 22
Q ss_pred ccCCCCCchHHHHHHHHHhCCCchHHHHHHHH
Q 041942 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
.+|.+......++.++.+.|++++|++++++
T Consensus 53 -~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 53 -LDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp -HHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 1233344455668888888888888888775
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.72 E-value=3.4e-05 Score=52.65 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=48.5
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|++++|.+.|+++++.+|++..++..++.+|.+.|++++|..+++++.....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 468899999999999999999999999999999999999999999999877544
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=5.2e-05 Score=42.21 Aligned_cols=31 Identities=48% Similarity=0.814 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 264 (498)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.71 E-value=0.00027 Score=66.03 Aligned_cols=99 Identities=9% Similarity=0.024 Sum_probs=82.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHh
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGV 411 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~ 411 (498)
-...+...|++++|+..|+++++. .| +...|..+..++.+.|++++|...+++++. +.|+ ...|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 455677889999999999999984 45 477888888999999999999999999988 5665 334448
Q ss_pred hCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 041942 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (498)
.|++++|...|+++++++|+++.+...+..+..
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999999999999999999887777655543
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.69 E-value=0.00077 Score=62.98 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCC
Q 041942 310 LIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGK 385 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 385 (498)
-...+...|++++|++.|++..+ .+...|..+..+|...|++++|+..++++++ +.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 45567788999999999998874 3677888999999999999999999999999 456 47788888899999999
Q ss_pred HHHHHHHHHHhHHhcCCCCC
Q 041942 386 VEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~ 405 (498)
+++|...+++..+ +.|+
T Consensus 86 ~~eA~~~~~~al~---l~P~ 102 (356)
T PLN03088 86 YQTAKAALEKGAS---LAPG 102 (356)
T ss_pred HHHHHHHHHHHHH---hCCC
Confidence 9999999999988 5565
No 166
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.042 Score=50.13 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-.++-.. +-++.-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3445566777889999999999999999999999999999999999987776432 2345888999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHH
Q 041942 386 VEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~ 424 (498)
..+|..++.++.. ..-+..|.++|++.+|.+..-+
T Consensus 253 ~~eA~~yI~k~~~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKIPD----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhCCh----HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999887421 3348889999999999766544
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.67 E-value=0.0016 Score=53.74 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD--RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGV 376 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 376 (498)
...+..+...+...|++++|...|++... ++ ..+|..+...+...|++++|+..+++... +.|+ ..++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 44445566666677777777777766532 22 24677778888888888888888888877 3443 4445555
Q ss_pred HHHHh-------hcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCC
Q 041942 377 LVACS-------HAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 377 ~~~~~-------~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~ 432 (498)
...+. ..|+++.|...+ ++|...+++++..+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~----------------------~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWF----------------------DQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHH----------------------HHHHHHHHHHHHhCccc
Confidence 55555 444444444333 34555777777777765
No 168
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.66 E-value=0.00049 Score=64.40 Aligned_cols=120 Identities=11% Similarity=0.075 Sum_probs=83.6
Q ss_pred cCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC-CCC-----hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH
Q 041942 32 GFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-EPD-----TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK 105 (498)
Q Consensus 32 ~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 105 (498)
+...++.....++. .... ..+++++..++-+.. .|+ ..+.+++++.|...|..+.++.+++.=...|+-||.
T Consensus 61 ~~~vS~~dld~fvn-~~~~-~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVN-NVES-KDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHh-hcCC-HhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 34555666666666 5555 566677777666654 222 235567888888888888888888888888888888
Q ss_pred hhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhc
Q 041942 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC 153 (498)
Q Consensus 106 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (498)
.+++.||..+.+.|++..|.++...|...+...+..++...+.++.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888777766666666665555555544
No 169
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0019 Score=54.81 Aligned_cols=131 Identities=10% Similarity=-0.009 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----------
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---------- 405 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------- 405 (498)
..-+.++..+...|.+.-.+..+++.++..-+.++.....|.+.-.+.|+.+.|...|+.+.+..+.-.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4556677788888899999999999998665557888888999999999999999999977663222111
Q ss_pred -hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCcc
Q 041942 406 -IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466 (498)
Q Consensus 406 -~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 466 (498)
...|.-..++.+|.+.+.+++..+|.++.+.+.-+-++.-.|+..+|++.++.|......|
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3334467789999999999999999999999999888888999999999999998876554
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.64 E-value=0.0023 Score=50.58 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
-.+...+...|++++|..+|+.+.. | +..-|..|..++-..|++.+|+..|......+ +-|+..+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3455566778888888888876653 3 56677788888888888999999888888843 234778888888888888
Q ss_pred CHHHHHHHHHHhHHhcCCCC
Q 041942 385 KVEEGKKYFKLMRDEYNIEP 404 (498)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~p 404 (498)
+.+.|++.|+..+...+-.|
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CHHHHHHHHHHHHHHhccCh
Confidence 98888888888877433333
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.61 E-value=0.0002 Score=49.60 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=52.2
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
.|...+++++|..++++++.++|+++..|...+.++...|++++|.+.+++..+.+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4667889999999999999999999999999999999999999999999999876653
No 172
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.60 E-value=7.6e-05 Score=51.08 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=46.5
Q ss_pred HHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC-CchHHHHHHHHhhhC
Q 041942 409 YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG-EWNRVEKVRKLMDDS 462 (498)
Q Consensus 409 y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 462 (498)
|...|++++|...|+++++.+|+++.+|..++.+|...| ++++|++.+++..+.
T Consensus 13 ~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 13 YFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 346677788888888888889999999999999999999 799999999998763
No 173
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.56 E-value=6e-05 Score=42.76 Aligned_cols=33 Identities=18% Similarity=0.482 Sum_probs=30.9
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.51 E-value=0.00035 Score=49.97 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=7.3
Q ss_pred HHHHHhCCCHHHHHHHHH
Q 041942 342 IGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~ 359 (498)
..+|...|++++|++.++
T Consensus 65 a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHh
Confidence 344444444444444443
No 175
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0017 Score=58.80 Aligned_cols=157 Identities=14% Similarity=0.070 Sum_probs=83.9
Q ss_pred HHHHHHHH-HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHH-----HHH
Q 041942 268 DVTMLSLL-TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW-----STL 341 (498)
Q Consensus 268 ~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~l 341 (498)
-.++..+- .++.-.|+.++|.++--..++......+... .-..++.-.++.+.|...|++...-++... ...
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~--vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY--VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH--hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 34444332 3445667777777665344433322221111 111223345677777777777665333221 122
Q ss_pred HHH----------HHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-
Q 041942 342 IGG----------LAFHGFAEESIAMFREMQRLKVRPT-----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN- 405 (498)
Q Consensus 342 ~~~----------~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 405 (498)
... ..+.|++..|.+.|.+.+. +.|+ ...|........+.|+..+|+.--+...+ +.|.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~sy 320 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSY 320 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHH
Confidence 221 2345677777777777766 4443 33455555566677777777776666654 5554
Q ss_pred -------hhHHHhhCChHHHHHHHHHHHccCCC
Q 041942 406 -------IRHYGVHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 406 -------~~~y~~~g~~~~a~~~~~~~~~~~~~ 431 (498)
...|...+++++|++.|+++.+...+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33333566677777777777765544
No 176
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.49 E-value=0.00094 Score=55.36 Aligned_cols=97 Identities=7% Similarity=0.059 Sum_probs=77.1
Q ss_pred HHhcccC--CCCChhhHHHHHHHHhc-----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcc-------------
Q 041942 59 HKMFVKI--TEPDTFMYNTIIRGSAQ-----SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL------------- 118 (498)
Q Consensus 59 ~~~~~~~--~~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~------------- 118 (498)
...|++. ...+-.+|..+++.|.+ .|.++=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 36677788888888754 477888888899999999999999999999987542
Q ss_pred ---cchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC
Q 041942 119 ---LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155 (498)
Q Consensus 119 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 155 (498)
.+-+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 3455678999999999999999999999999877665
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.48 E-value=0.0044 Score=60.63 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=88.7
Q ss_pred CChhHHHHHHHHHHh--CC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhc--------CCHHHHHHHHHHhHH
Q 041942 333 RDVSTWSTLIGGLAF--HG---FAEESIAMFREMQRLKVRPT-EITFVGVLVACSHA--------GKVEEGKKYFKLMRD 398 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 398 (498)
.|...|...+++... .+ +...|..+|++.++ ..|+ ...+..+..++... ++...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 477788887776443 22 36789999999998 6687 44555444433221 123344444444333
Q ss_pred hcCCCC-ChhHHH-------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 399 EYNIEP-NIRHYG-------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 399 ~~~~~p-~~~~y~-------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
....| +...|. ..|++++|...++++++++| +..+|..++.++...|++++|.+.|++....+..
T Consensus 413 -l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 413 -LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred -cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 11122 222222 67999999999999999999 5789999999999999999999999999876654
No 178
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.45 E-value=0.0011 Score=48.38 Aligned_cols=92 Identities=11% Similarity=-0.065 Sum_probs=61.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHh
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHAN 152 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (498)
|..+...+...|++++|...++...+.. +.+...+..+..++...++++.|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556666677788888888888776642 2334556666666777777888888777777654 3344566667777777
Q ss_pred cCChhHHHHhhccC
Q 041942 153 CGDLNTASVLFDGD 166 (498)
Q Consensus 153 ~g~~~~A~~~~~~~ 166 (498)
.|+++.|...++..
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 77777777666543
No 179
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.15 Score=50.35 Aligned_cols=100 Identities=9% Similarity=0.042 Sum_probs=60.2
Q ss_pred hCCCCCCHhhHHHH-----HHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCh---hHHHHhhccCCC-
Q 041942 98 KCSIKPNKFTFSFV-----LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL---NTASVLFDGDAK- 168 (498)
Q Consensus 98 ~~~~~p~~~~~~~l-----i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~- 168 (498)
.-|++.+..-|..+ |.-+...+.+..|.++-..+...-..- ..+|.....-+.+..+. +-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 34666666666544 444556677777777776664321111 56666676666666332 222333333333
Q ss_pred -CCcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 041942 169 -MDVVAWSSLTAGYARRGELSMARSLFDEMP 198 (498)
Q Consensus 169 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 198 (498)
....+|..+..-....|+.+.|..+++.=.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~ 534 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEP 534 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCC
Confidence 455678888888888888888888876543
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.43 E-value=0.013 Score=51.36 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=45.6
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
...|.+.|.+..|..-++.+++.-|+.+ .+...++.+|...|..++|..+.+.+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3345588999999999999998888765 577888999999999999998877664
No 181
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.43 E-value=0.1 Score=48.34 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH----
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~---- 410 (498)
..|...+..-.+....+.|..+|-++.+.| +.++...++.++.-++ .|+...|..+|+.-...+ ||...|.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 456666776667777777888888877777 4566777777776554 367777777777765533 3322332
Q ss_pred ----hhCChHHHHHHHHHHHccCCCC--CchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 411 ----VHGDVELGRLANKRLLNMRKDE--SGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 411 ----~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
..++-+.|+.+|+..++.-.++ ..+|..++.--..-|+...|..+=++|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 6677777777777666433333 4567777777777777766665555554
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0045 Score=47.16 Aligned_cols=108 Identities=12% Similarity=0.097 Sum_probs=67.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc-chhhHHHHHHHH
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPD--DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMY 314 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 314 (498)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..++++.....+..+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 456677788999999999999988886654 33556677788888999999998866665543211 122222233455
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHH
Q 041942 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345 (498)
Q Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 345 (498)
...|+.++|++.+-....++...|..-|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777766544333333444433333
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0018 Score=49.27 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=64.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPT--EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVEL 417 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~ 417 (498)
.+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++.....+ |+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~------------ 70 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PD------------ 70 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CC------------
Confidence 345567778899999999999888876654 3456666778888888888888888776631 22
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
++.+......++.++...|++++|++.+-...
T Consensus 71 -----------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 71 -----------DELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred -----------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01133445555667777777777777665443
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.41 E-value=0.029 Score=45.28 Aligned_cols=131 Identities=13% Similarity=0.033 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHH
Q 041942 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----RDVSTWS 339 (498)
Q Consensus 265 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~ 339 (498)
.|+...-..|..++...|+..+|...| +........-|....-.+.++....+++.+|...++.+-+ ..+.+--
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy-~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHY-QQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHH-HHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 566666666667777777777777777 3333444455666666666666777777777777766553 1334455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+.+.|...|++.+|...|+.... .-|+...-......+.++|+.+++..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 566778888888888888888887 456655444445555677766666554444433
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.39 E-value=0.022 Score=54.77 Aligned_cols=205 Identities=11% Similarity=0.044 Sum_probs=101.9
Q ss_pred hhhccCCChHHHHHhcccCCC-----------CChhhHHHHHHHHhccCC--hHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 041942 47 GSVVIPGAINYAHKMFVKITE-----------PDTFMYNTIIRGSAQSQN--PLDAVFLYTQMEKCSIKPNKFTFSFVLK 113 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~ll~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~ 113 (498)
-|.. .|.+++|.++---... -+...++..=.+|.+..+ +-+.+.-+++|+++|-.|+... +..
T Consensus 565 q~Ie-ag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~ 640 (1081)
T KOG1538|consen 565 QYIE-RGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LAD 640 (1081)
T ss_pred hhhh-ccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHH
Confidence 3444 6777777665433221 112223333444544433 3344445566666766666533 234
Q ss_pred HhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC--------------CcchHHHHHH
Q 041942 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM--------------DVVAWSSLTA 179 (498)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~l~~ 179 (498)
.|+-.|++.+|.++|.+ .|.+ +..+.+|.....++.|.+++...... +..--.+...
T Consensus 641 ~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAE 711 (1081)
T KOG1538|consen 641 VFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAE 711 (1081)
T ss_pred HHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHH
Confidence 45666777777666643 2322 23344455555555555554332110 1111111222
Q ss_pred HHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 041942 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259 (498)
Q Consensus 180 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 259 (498)
.+...|+.++|.. .....|-.+-+.++-.++...+..+...+..-+.+...+.-|-++|..|
T Consensus 712 mLiSaGe~~KAi~------------------i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 712 MLISAGEHVKAIE------------------ICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred Hhhcccchhhhhh------------------hhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 2333333333332 2334444555555555555555556666666666666677777777766
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 260 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
-. ...+++.....++|.+|..+-
T Consensus 774 gD---------~ksiVqlHve~~~W~eAFalA 796 (1081)
T KOG1538|consen 774 GD---------LKSLVQLHVETQRWDEAFALA 796 (1081)
T ss_pred cc---------HHHHhhheeecccchHhHhhh
Confidence 42 234556666777777777665
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.37 E-value=0.0055 Score=57.57 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc-CCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhH
Q 041942 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS-GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD----RDVST 337 (498)
Q Consensus 263 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~ 337 (498)
+.+.+...+..++..+....+++.+..++-+...... ...-..+..++++.|.+.|..++++.++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455666777777777777777777777634333221 122344446778888888888888877765443 67788
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 383 (498)
+|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877776666677777666666654
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.34 E-value=0.034 Score=44.90 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=93.2
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh--cCCCCC-----
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE--YNIEPN----- 405 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~p~----- 405 (498)
|.+..--.|..++.+.|++.+|...|.+....-+.-|......+.++....+++..|...++.+-+. .+-.||
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3444555677888888999999998888877555667888888888888889998888888887662 123444
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
..+|...|.+.+|+..|+.++.-.|+ +.....+...+.++|+.++|..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 55666888888899999988876654 455666677788888777766544444
No 188
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.0039 Score=51.66 Aligned_cols=89 Identities=10% Similarity=0.024 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN--KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
...|..+...+...|++++|...|++..+....+. ...+..+...+.+.|+++.|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34566677777778888888888888765432222 3466677777778888888888888877753 23455566666
Q ss_pred HHHHhcCChhHH
Q 041942 148 YFHANCGDLNTA 159 (498)
Q Consensus 148 ~~~~~~g~~~~A 159 (498)
.++...|+...+
T Consensus 114 ~~~~~~g~~~~a 125 (172)
T PRK02603 114 VIYHKRGEKAEE 125 (172)
T ss_pred HHHHHcCChHhH
Confidence 677666664443
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.30 E-value=0.0026 Score=52.55 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhh
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH 412 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~ 412 (498)
...|..++..+...|++++|+..|++.......|. ..++..+...+...|++++|...+++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~-------------- 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE-------------- 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 34566677777777778888887777766322221 23555566666666666666666665554
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHHH-------hCCCchHHHHHHHHh
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYA-------SRGEWNRVEKVRKLM 459 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~m 459 (498)
++|.....+..++.++. ..|++++|+..+++.
T Consensus 101 ---------------~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 101 ---------------RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred ---------------hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 44555555666666666 778877665555543
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.30 E-value=0.0013 Score=44.92 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC-CHHHHHHHHHHhHH
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAG-KVEEGKKYFKLMRD 398 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 398 (498)
+..+|..+...+...|++++|+..|++.++ +.|+ ...|..+..++...| ++++|.+.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456788888899999999999999999988 4564 667778888888888 68899888888776
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.28 E-value=0.0023 Score=57.64 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041942 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRD---VSTWSTLIGG-LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380 (498)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 380 (498)
.+|..++...-+.+..+.|..+|.+..+.. ...|-..... |...++.+.|.++|+...+. +..+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 357778888888888999999998877542 3344433333 33356777799999988874 455677788888888
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCC-ChhHHH-------hhCChHHHHHHHHHHHccCCCCC
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEP-NIRHYG-------VHGDVELGRLANKRLLNMRKDES 433 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~-------~~g~~~~a~~~~~~~~~~~~~~~ 433 (498)
.+.|+.+.|+.+|++.....+-.. ....|. +.|+++...++.+++.+..|++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 888999999999999877311111 112232 77778888888877777776643
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.26 E-value=0.15 Score=46.68 Aligned_cols=106 Identities=14% Similarity=0.218 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 041942 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252 (498)
Q Consensus 173 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 252 (498)
+.+..+.-+...|+...|.++-.+...|+-..|-..+.+++..++|++-.++... +.++.-|...+.+|.+.|+..+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHH
Confidence 4445566666777777777777777777777777777777777777777765543 44567777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHH
Q 041942 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290 (498)
Q Consensus 253 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 290 (498)
..++..+ + +..-+..|.+.|++.+|.+.
T Consensus 257 ~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 257 SKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 7766652 1 23345556666777666554
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.24 E-value=0.0098 Score=53.58 Aligned_cols=139 Identities=13% Similarity=0.044 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA-CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++..+ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 356777777777777888888888887543 2233333333333 3334666678888866666543 45566677778
Q ss_pred HHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041942 313 MYAKCGSIERAIEVFLGMRDR------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 377 (498)
.+.+.|+.+.|..+|++.... -...|...+..=.+.|+.+.+.++.+++.+ .-|+...+..++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~ 147 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFS 147 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHH
Confidence 888888888888888776642 234777777777777888888888887777 445544443333
No 194
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.15 Score=46.69 Aligned_cols=154 Identities=13% Similarity=0.053 Sum_probs=87.4
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChh-hHHHHH--HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH------------
Q 041942 210 TGYAKQGEMEKANELFNEVPKRDVV-SWNAMI--SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL------------ 274 (498)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l------------ 274 (498)
.++.-.|+.++|...--.+.+.|.. .+..++ .++-..++.+.+...|.+-+..+ |+...-...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHh
Confidence 3455667777776666555543332 222222 23334566677777777666542 333221111
Q ss_pred -HHHHhccCCchHHHHHHHHHHHhh--cCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHHhC
Q 041942 275 -LTACADLGDLEVGKKVHCTLLDMT--SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS---TWSTLIGGLAFH 348 (498)
Q Consensus 275 -i~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~ 348 (498)
..-..+.|++..|.+.|.+.+... +..++...|........+.|+..+|+.--+....-|.. .|..-..++...
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 112346677788877775554332 23344555555555666778888888777776665543 344444556667
Q ss_pred CCHHHHHHHHHHHHHCC
Q 041942 349 GFAEESIAMFREMQRLK 365 (498)
Q Consensus 349 ~~~~~A~~~~~~m~~~~ 365 (498)
++|++|++-++...+..
T Consensus 335 e~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 78888888887776643
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.22 E-value=0.031 Score=49.02 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRL--KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+...|.+.|.+..|+.-++.+++. +.+........+..+|...|..++|..+...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 4566788889999999999998874 2223456677788899999999999888776543
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.22 E-value=0.16 Score=46.25 Aligned_cols=275 Identities=14% Similarity=0.083 Sum_probs=161.3
Q ss_pred ccchhhHHHHHHHHHHhCCCCChHHHHHHHHH--HHhcCChhHHHHhhccCCCCCcch----HHHHHHHHHhcCChHHHH
Q 041942 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF--HANCGDLNTASVLFDGDAKMDVVA----WSSLTAGYARRGELSMAR 191 (498)
Q Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~ 191 (498)
.|+-..|.++-.+..+. +..|......|+.+ -.-.|+++.|.+-|+.|.. |+.+ ...|.-.--+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 35555555555444321 12233333333322 2335777777777777664 2222 112222234567777777
Q ss_pred HHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCC-----CCChh--hHHHHHH----HHHhCCChHHHHHHHH
Q 041942 192 SLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVP-----KRDVV--SWNAMIS----GYVLCGMNKQALEMFE 257 (498)
Q Consensus 192 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~l~~----~~~~~g~~~~a~~~~~ 257 (498)
.+-++.- +.-.-.+...+...+..|+++.|+++++.-. +++.. .-..|+. ... ..+...|...-.
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHH
Confidence 7666655 2223466677777788888888888776544 23332 1111221 111 123444554444
Q ss_pred HHHhCCCCCCHHH-HHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH----HHHHhcCCC
Q 041942 258 EMRSVGERPDDVT-MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA----IEVFLGMRD 332 (498)
Q Consensus 258 ~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A----~~~~~~~~~ 332 (498)
+..+ +.||-.- -.....++.+.|+..++-.++ +-+-+....|+ ++ ++..+.+.|+.... .+-+..|+.
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il-E~aWK~ePHP~--ia--~lY~~ar~gdta~dRlkRa~~L~slk~ 326 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL-ETAWKAEPHPD--IA--LLYVRARSGDTALDRLKRAKKLESLKP 326 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHH-HHHHhcCCChH--HH--HHHHHhcCCCcHHHHHHHHHHHHhcCc
Confidence 4333 3454332 223456788999999999998 44444433343 32 33345566663322 234567777
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS-HAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
.|..+...+..+-...|++..|..--+...+ ..|....|..|...-. ..|+-.++...+.+..+ .+-.|.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~-APrdPa 397 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK-APRDPA 397 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc-CCCCCc
Confidence 7888888889999999999988877777666 6788888888876544 45999999999999888 666665
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.20 E-value=0.0059 Score=54.02 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE----ITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|...+..+.+.|++++|+..|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444445567777777777777763 3432 3555566666677777777777766665
No 198
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.19 E-value=0.32 Score=49.19 Aligned_cols=207 Identities=13% Similarity=0.013 Sum_probs=120.9
Q ss_pred hchhhhHHHH-HHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHH
Q 041942 16 TNLRTLKQIQ-ALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVF 91 (498)
Q Consensus 16 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~ 91 (498)
++.+.|.+-. ..+.+++-.+-..++..+. ..+ .|+.++|..+++... ..|..+...+-..|...++.++|..
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLs---l~r-~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALS---LFR-LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHH---HHH-hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 3445554433 3445554444444444443 345 789999998888775 4467788888888999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcC-C---------hhHHHH
Q 041942 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCG-D---------LNTASV 161 (498)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~ 161 (498)
+|+...+. .|+..-...+..++.|.+++..-.+.--++-+. ++-+...+=++++.+...- . ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99999874 677888888888899888777655555444442 2333333333444433321 1 122334
Q ss_pred hhccCCCCC--cch---HHHHHHHHHhcCChHHHHHHHhcCC-----CCCcchHHHHHHHHHhcCChHHHHHHHhhCC
Q 041942 162 LFDGDAKMD--VVA---WSSLTAGYARRGELSMARSLFDEMP-----VRDLVSWNVMITGYAKQGEMEKANELFNEVP 229 (498)
Q Consensus 162 ~~~~~~~~~--~~~---~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (498)
.++.+.+.+ ..+ ...-...+...|++++|..++..-. .-+...-+.-+..+...+++.+..++-.++.
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 444443322 111 1122334556778888888873222 2222333344555666666666555555444
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.11 E-value=0.0079 Score=53.20 Aligned_cols=95 Identities=7% Similarity=0.060 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC---C-----hhHHHhhCChHHHHHHHHHHHccCCCCC---chHHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP---N-----IRHYGVHGDVELGRLANKRLLNMRKDES---GDYVL 438 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p---~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~ 438 (498)
...|...+....+.|++++|...|+.+++.++-.+ + ...|...|++++|...|+++++..|+++ .++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34565555555777999999999999988543332 2 3455599999999999999999888864 56677
Q ss_pred HHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 439 LSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
++.++...|++++|..+|+++.+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 78899999999999999999987543
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.07 E-value=0.0035 Score=42.08 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=39.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+...+...|++++|...|+++++.. | +...+..+..++...|++++|...++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677777888888888777743 5 356666677777777777777777777766
No 201
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.07 E-value=0.052 Score=53.32 Aligned_cols=71 Identities=8% Similarity=0.062 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHH
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y 409 (498)
+...|..+...+...|++++|...++++.+ +.|+...|..+...+...|+.++|.+.+++... +.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~---L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN---LRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCchH
Confidence 445666666666667777777777777777 446666777777777777777777777777655 45554444
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.1 Score=44.70 Aligned_cols=169 Identities=10% Similarity=0.025 Sum_probs=113.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC----------CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVPK----------RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 274 (498)
++.|.+.+.-..-+++-...++.-.. +-....+.++..+...|.+.-.+..+++.++...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 44454444444444444444443322 22345566777778889999999999999988767788888889
Q ss_pred HHHHhccCCchHHHHHHHHHHHhhcCCcchhhHH-----HHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHH
Q 041942 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN-----ALIDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLA 346 (498)
Q Consensus 275 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 346 (498)
.+.-.+.|+.+.|..+|+...+.. ...+-..++ .....|.-++++..|...+.++... |+..-|.-.-+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 999999999999999995433332 233333333 3334566678899999999887753 5555565555566
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041942 347 FHGFAEESIAMFREMQRLKVRPTEITFVGV 376 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 376 (498)
-.|+..+|++.++.|+. ..|...+-+++
T Consensus 298 Ylg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 67899999999999988 45655544433
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0049 Score=55.89 Aligned_cols=127 Identities=15% Similarity=0.051 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHH---hhcCC-cchhhHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--ChhH
Q 041942 271 MLSLLTACADLGDLEVGKKVHCTLLD---MTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMR-------DR--DVST 337 (498)
Q Consensus 271 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~~ 337 (498)
|..|...|.-.|+++.|+...+..+. +.|.. .....+..|..++.-.|+++.|.+.|+... .+ ...+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44444455555666666655433222 11111 112333445556666666666666555322 12 2234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRL----K-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
...|...|.-..++++|+.++.+-..- + ..-....+.+|..++...|..++|..+.+.-.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455666666666667776666553321 0 11234566667777777777666666555443
No 204
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.97 E-value=0.014 Score=42.86 Aligned_cols=81 Identities=11% Similarity=-0.070 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCC--------chHHHHHHHHHHHhhcCCcchh
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGD--------LEVGKKVHCTLLDMTSGVAKVL 305 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~ 305 (498)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-....+| +-+...+.+|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvY-qDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVY-QDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHH-HHHHHhccCCcHH
Confidence 344556666677999999999999999999 8899999999988765432 33455566 3334566777777
Q ss_pred hHHHHHHHHHh
Q 041942 306 HGNALIDMYAK 316 (498)
Q Consensus 306 ~~~~l~~~~~~ 316 (498)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 205
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.96 E-value=0.32 Score=45.27 Aligned_cols=431 Identities=10% Similarity=0.056 Sum_probs=202.0
Q ss_pred HHHHhhchhhhHHHHHHHHHhcCCc-----ChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHH--h
Q 041942 11 LWKKCTNLRTLKQIQALVTINGFNS-----DSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGS--A 81 (498)
Q Consensus 11 ~l~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~--~ 81 (498)
+|..-++...+..++..+.+..-.. .....+.+|. +|- .++++.....+.... .| ...|-.+..++ -
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~griln-Aff--l~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILN-AFF--LNNLDLMEKQLMELRQQFG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHH-HHH--HhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3444456667777777765542111 1334456666 444 256666555555544 23 33455555443 4
Q ss_pred ccCChHHHHHHHHHHHhC--CCCC------------CHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCC----CChHHH
Q 041942 82 QSQNPLDAVFLYTQMEKC--SIKP------------NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE----FNRFVR 143 (498)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 143 (498)
+.+.+..|++.+..-..+ +..| |...=++.+.++...|.+.+++.+++++...=++ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888877766543 2222 2222245566777888888888888887764333 677788
Q ss_pred HHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHh-----cCCh
Q 041942 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK-----QGEM 218 (498)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~ 218 (498)
+.++-+++++=-++.-. .+...=..-|..++..|.+.=..-++. -+++. .|.......++....- .--+
T Consensus 171 d~~vlmlsrSYfLEl~e----~~s~dl~pdyYemilfY~kki~~~d~~-~Y~k~-~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKE----SMSSDLYPDYYEMILFYLKKIHAFDQR-PYEKF-IPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHHHHHhHHHHHHHHH----hcccccChHHHHHHHHHHHHHHHHhhc-hHHhh-CcHHHHHHHHHHHHHhCCHhhccHH
Confidence 77666665542222111 111111112333333333221110000 00000 0111111111111000 0001
Q ss_pred HHHHHHHhhCC-CCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhccCCchHHHHHHH
Q 041942 219 EKANELFNEVP-KRDV-VSWNAMISGYVLCGMNKQALEMFEEMRSVGERP----DDVTMLSLLTACADLGDLEVGKKVHC 292 (498)
Q Consensus 219 ~~A~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~ 292 (498)
-++.+.++.-- .|+. -....+...+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l- 321 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL- 321 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-
Confidence 11112221110 1211 111222222222 3333333333322221111 1234555555555666666665555
Q ss_pred HHHHhhcCCcchhhH-------HHHHHHHHh----cCCHHHHHHHHhcCCCCChh---HHHHHH---HHHHhCCC-HHHH
Q 041942 293 TLLDMTSGVAKVLHG-------NALIDMYAK----CGSIERAIEVFLGMRDRDVS---TWSTLI---GGLAFHGF-AEES 354 (498)
Q Consensus 293 ~~~~~~~~~~~~~~~-------~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~---~~~~l~---~~~~~~~~-~~~A 354 (498)
.++..-. |+...- ..+.+..+. ..+...=+.+|+.+...|+. .-..|+ .-+-+.|. -++|
T Consensus 322 ~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 322 ALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHH
Confidence 4443222 111110 111222220 11122223344444333221 111222 22444555 7788
Q ss_pred HHHHHHHHHCCCCCC-HHHHH----HHHHHHhhc---CCHHHHHHHHHHhHHhcCCCCC-------------hhHHHhhC
Q 041942 355 IAMFREMQRLKVRPT-EITFV----GVLVACSHA---GKVEEGKKYFKLMRDEYNIEPN-------------IRHYGVHG 413 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~-~~~~~----~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~p~-------------~~~y~~~g 413 (498)
+.+++...+ +.|. ..+-+ .+-..|.++ ..+.+-..+-+-+.+ .|+.|- ++..-.+|
T Consensus 400 lnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e-~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 400 LNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE-VGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 888888877 4453 22222 222334332 233444444343444 788775 22222888
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
++.++.-.-.-..+..| ++.+|..++-++....++++|.+++.++.
T Consensus 477 ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99988888888888888 89999999999999999999999998863
No 206
>PRK15331 chaperone protein SicA; Provisional
Probab=96.95 E-value=0.025 Score=45.11 Aligned_cols=82 Identities=7% Similarity=0.115 Sum_probs=53.1
Q ss_pred HhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 380 CSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
+...|++++|..+|+-+..-...+|+ ...+-..+++++|...|..+..++++||......+.+|...|+.+.|..
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 44566777777776666551112222 2222266677777777777777777777777777777777788777777
Q ss_pred HHHHhhh
Q 041942 455 VRKLMDD 461 (498)
Q Consensus 455 ~~~~m~~ 461 (498)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7777665
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.93 E-value=0.011 Score=49.29 Aligned_cols=95 Identities=13% Similarity=0.179 Sum_probs=65.6
Q ss_pred HHHHhhC--CCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC------------
Q 041942 222 NELFNEV--PKRDVVSWNAMISGYVLC-----GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG------------ 282 (498)
Q Consensus 222 ~~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~------------ 282 (498)
...|+.. ..++-.+|..++..|.+. |.++-....++.|.+.|+.-|..+|+.|+..+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 456778888888888754 778888889999999999999999999998875421
Q ss_pred ----CchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhc
Q 041942 283 ----DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317 (498)
Q Consensus 283 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (498)
+-+-|++++ +.|+..|+.||..++..|++.+.+.
T Consensus 114 hyp~Qq~c~i~lL-~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 114 HYPRQQECAIDLL-EQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred cCcHHHHHHHHHH-HHHHHcCCCCcHHHHHHHHHHhccc
Confidence 123455555 5555556666655555555555443
No 208
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.011 Score=53.78 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 041942 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442 (498)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 442 (498)
.++..+.-++.+.+++..|++...+..+ +.|+ ...+...|+++.|+..|+++++++|+|..+-..|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe---~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLE---LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3566777788888888888888888866 4554 4455578889999999999999999999999999988
Q ss_pred HHhCCCchHH-HHHHHHhhhC
Q 041942 443 YASRGEWNRV-EKVRKLMDDS 462 (498)
Q Consensus 443 ~~~~g~~~~A-~~~~~~m~~~ 462 (498)
--+..++.+. .++|..|..+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 8887765554 7889998654
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.88 E-value=0.34 Score=44.23 Aligned_cols=189 Identities=15% Similarity=0.103 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHhC--CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCCchHHHHHHHHHHHhhcCCcchhh--H
Q 041942 234 VSWNAMISGYVLC--GMNKQALEMFEEMRSVGERPDDVTMLSLLTA--CADLGDLEVGKKVHCTLLDMTSGVAKVLH--G 307 (498)
Q Consensus 234 ~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 307 (498)
.-|..|-.++... |+-..|.++-.+-.+. +..|...+..++.+ -.-.|+++.|.+-|+.|+. . |.... .
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-d---PEtRllGL 157 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-D---PETRLLGL 157 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-C---hHHHHHhH
Confidence 3466666555543 5666666555443311 24455555555543 4567899999999944442 2 22111 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHH--H
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEI--TFVGVLV--A 379 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~--~~~~l~~--~ 379 (498)
..|.-.-.+.|+.+.|..+-++... | -...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+. +
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 3333344567888888887776553 2 34677888888899999999999988765532 345532 2223332 2
Q ss_pred Hhh-cCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCC
Q 041942 380 CSH-AGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRK 430 (498)
Q Consensus 380 ~~~-~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~ 430 (498)
... .-+...|...-.+..+ +.|+ ...+.+.|++.++-.+++.+.+..|
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 238 MSLLDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 222 1245666666555544 6666 4556688899999999998887666
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.87 E-value=0.045 Score=46.68 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHccCCCCCch-----------------HHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 415 VELGRLANKRLLNMRKDESGD-----------------YVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
..+|...|+.+++..|+++.+ -..++..|.+.|.+..|..-++.+.+.
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345556666666666665432 235688899999999999999998875
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.81 E-value=0.029 Score=43.64 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=41.9
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCc---hHHHHHHHHHhCCC-
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESG---DYVLLSNIYASRGE- 448 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~- 448 (498)
.+.|++++|.+.|+.+...++..|- +.+|-+.+++++|...++++++++|.++. ++...+-++.+...
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 4445555555555555554333332 34444555555555555555556665542 22223333333332
Q ss_pred --------------chHHHHHHHHhhhC
Q 041942 449 --------------WNRVEKVRKLMDDS 462 (498)
Q Consensus 449 --------------~~~A~~~~~~m~~~ 462 (498)
..+|...|+++.+.
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 55677777777653
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.78 E-value=0.021 Score=45.82 Aligned_cols=112 Identities=20% Similarity=0.152 Sum_probs=69.0
Q ss_pred HHhCCCHHHHHHHHHHHHHC--C-CCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHH
Q 041942 345 LAFHGFAEESIAMFREMQRL--K-VRPTEI--TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~--~-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~ 419 (498)
....++.+.+...+.++... | +-|+.. .|..-.+...+..-.+....+. ..+...|++++|.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~-------------~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLA-------------EALLEAGDYEEAL 82 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHH-------------HHHHHTT-HHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhccCHHHHH
Confidence 45567888888888888763 2 222211 2222222222211122222222 2334578999999
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh-----hCCCccCCc
Q 041942 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD-----DSDIKKQPG 469 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 469 (498)
...++++..+|-+-..|..++.+|...|+..+|++.|+++. +.|+.|.+.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 99999999999999999999999999999999999999885 458877654
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.74 E-value=0.064 Score=45.77 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=37.9
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHH
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVE 453 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~ 453 (498)
...|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.|.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4556699999999999999999989865 46788899999999887544
No 214
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.73 E-value=0.0063 Score=41.23 Aligned_cols=50 Identities=16% Similarity=-0.018 Sum_probs=25.2
Q ss_pred ccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC
Q 041942 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168 (498)
Q Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (498)
.|++++|.++|+.+.+.. +-+..++..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555443 22444445555555555555555555555443
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.67 E-value=0.0035 Score=43.94 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCc
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (498)
..+++.+...|...|++++|+..+++..+. .+..-...|.-..++..++.+|...|++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------------~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 62 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI----------------------EEQLGDDHPDTANTLNNLGECYYRLGDY 62 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----------------------HHHTTTHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------HHHHCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 356777778888888888888888887661 1110000111245789999999999999
Q ss_pred hHHHHHHHHhhh
Q 041942 450 NRVEKVRKLMDD 461 (498)
Q Consensus 450 ~~A~~~~~~m~~ 461 (498)
++|++.+++..+
T Consensus 63 ~~A~~~~~~al~ 74 (78)
T PF13424_consen 63 EEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.62 E-value=0.008 Score=41.42 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 343 GGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..|.+.+++++|.+.+++++.. .| +...+......+.+.|++++|.+.++.+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677778888888888888773 34 355666666777777777777777777766
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.50 E-value=0.9 Score=44.07 Aligned_cols=395 Identities=10% Similarity=0.044 Sum_probs=214.9
Q ss_pred ChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChh-hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041942 36 DSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTF-MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112 (498)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 112 (498)
+-..+..+|. --.. ....+.+..+++.+. -|... -|-.....=.+.|..+.+.++|++-.+ |++-+...|...+
T Consensus 44 ~f~~wt~li~-~~~~-~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQ-ENDS-IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHh-ccCc-hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3344555555 2233 344456666666655 45443 345555555677888899999998876 4666777777766
Q ss_pred HHhh-cccchhhHHHHHHHHHHh-CCC-CChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHH---hcC-
Q 041942 113 KACT-RLLYRNMGFCVHGKIVKY-GFE-FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA---RRG- 185 (498)
Q Consensus 113 ~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~~- 185 (498)
..+. ..|+.+.....|+..+.. |.. .....|...+..-..++++.....+++++.+-....++....-|. ...
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 6554 446777788888877763 322 345678888888888888888888888776644433433333222 111
Q ss_pred -----ChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHH-------HHHHHHHhCCChH
Q 041942 186 -----ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV---VSWN-------AMISGYVLCGMNK 250 (498)
Q Consensus 186 -----~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~-------~l~~~~~~~g~~~ 250 (498)
..+++.++-.........++ .....+......+....|.. ...+ ..-..+...-...
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~~~--------~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~ 272 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKITH--------SQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEE 272 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhccc--------ccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 11111111110000000000 00111222222222222211 0111 1111222222222
Q ss_pred HHHHHHHHHHhC---CCC----CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 251 QALEMFEEMRSV---GER----PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 251 ~a~~~~~~m~~~---g~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
.....++.-++. .++ ++..+|..-+.--...|+.+.+.-.|+....... .-...|-..+......|+.+-|
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--~Y~efWiky~~~m~~~~~~~~~ 350 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--LYDEFWIKYARWMESSGDVSLA 350 (577)
T ss_pred HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--hhHHHHHHHHHHHHHcCchhHH
Confidence 333333333221 112 2345666666666777888777777744433221 1123334444444555888888
Q ss_pred HHHHhcCCC------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCHHHHH---HHH
Q 041942 324 IEVFLGMRD------RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI-TFVGVLVACSHAGKVEEGK---KYF 393 (498)
Q Consensus 324 ~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~---~~~ 393 (498)
..++....+ |......+.+. -..|+++.|..+++..... + |+.. .-..-+....+.|+.+.+. +++
T Consensus 351 ~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~ 426 (577)
T KOG1258|consen 351 NNVLARACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELY 426 (577)
T ss_pred HHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHH
Confidence 777765542 23333333333 3467999999999998875 3 6532 2223334456677777777 444
Q ss_pred HHhHHhcCCCCC----------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 394 KLMRDEYNIEPN----------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 394 ~~~~~~~~~~p~----------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
..... ....+. ...|.-.++.+.|..++.++.+..|++...|..++......+-
T Consensus 427 s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 427 SSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 44444 233333 2223377899999999999999999999999999998887763
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=1 Score=44.77 Aligned_cols=310 Identities=10% Similarity=0.073 Sum_probs=190.4
Q ss_pred HhCCCCChHHHH-----HHHHHHHhcCChhHHHHhhccCCCCC---cchHHHHHHHHHhcC---ChHHHHHHHhcCCC--
Q 041942 133 KYGFEFNRFVRN-----SLIYFHANCGDLNTASVLFDGDAKMD---VVAWSSLTAGYARRG---ELSMARSLFDEMPV-- 199 (498)
Q Consensus 133 ~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-- 199 (498)
..|++.+..-|. .+++-+...+.+..|.++-..+..|. ...|.....-+.+.. +-+-+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 346666655553 56777888899999999888776654 455666666666553 22333334444443
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC--------
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKR--------DVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-------- 263 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-------- 263 (498)
.+..+|..+.......|+.+-|..+++.=... +..-+..-+.-+...|+.+-...++-.|...-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888999999999988764431 22234455566667777777666665554321
Q ss_pred ---CCCCHHHHHHHHH--------HHhccCCchHHHHHHHHHHH------hhcCCcchhhHHHHHHHHHhcCCHH---HH
Q 041942 264 ---ERPDDVTMLSLLT--------ACADLGDLEVGKKVHCTLLD------MTSGVAKVLHGNALIDMYAKCGSIE---RA 323 (498)
Q Consensus 264 ---~~p~~~~~~~li~--------~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~---~A 323 (498)
.+.....|.-++. .+.+.++...+..-| ..-. ..+..|+. ......+.+..... +|
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~-~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASF-HLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhh-hhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHH
Confidence 1111222222222 112222222222222 1110 11222222 22334444433311 11
Q ss_pred -------HHHHhcCCCC-----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 041942 324 -------IEVFLGMRDR-----DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391 (498)
Q Consensus 324 -------~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 391 (498)
+.+.+.+... .-.+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.++...++|++-++
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 1111222111 12345555666777899999998877654 4888888888999999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHH
Q 041942 392 YFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 392 ~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
+-+..+.-.|..|=+....+.|+.++|.+++.+.-. +...+.+|.+.|++.+|.++--+
T Consensus 737 fAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 737 FAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhccCCCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 988887667888888888899999999999987632 22678899999999999876444
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.42 E-value=0.043 Score=42.27 Aligned_cols=81 Identities=10% Similarity=-0.024 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHH---------------HhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEM---------------RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m---------------~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 299 (498)
++..+|.++++.|+.+....+++.. ......|+..+..+++.+|+..+++..|.++.+......+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 4444555555555555544444432 1233567888888888888888888888888877888888
Q ss_pred CCcchhhHHHHHHHHH
Q 041942 300 GVAKVLHGNALIDMYA 315 (498)
Q Consensus 300 ~~~~~~~~~~l~~~~~ 315 (498)
++.+..+|..|++-..
T Consensus 84 I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 84 IPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7777777777776544
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.34 E-value=0.38 Score=46.83 Aligned_cols=247 Identities=12% Similarity=0.127 Sum_probs=137.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC-----------CChhhHHHHHHHHHhCCC--hHHHHHHHHHHHhCCCCCCH
Q 041942 202 LVSWNVMITGYAKQGEMEKANELFNEVPK-----------RDVVSWNAMISGYVLCGM--NKQALEMFEEMRSVGERPDD 268 (498)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 268 (498)
.+.+.+-+..|...|.+++|.++----.- -+.-.++.-=.+|.+..+ +-+...-++++++.|-.|+.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 34455555667777777776554322110 122234444456666554 34555667788888888887
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--------------CC
Q 041942 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--------------RD 334 (498)
Q Consensus 269 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~ 334 (498)
... ...|+-.|++.+|.++|. +.|.. +..+.+|.....++.|.+++..-.. .|
T Consensus 636 iLl---A~~~Ay~gKF~EAAklFk----~~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 636 LLL---ADVFAYQGKFHEAAKLFK----RSGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred HHH---HHHHHhhhhHHHHHHHHH----HcCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 643 445667788888888872 22221 2233344444444444444433221 01
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHH------HHHCC--C-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFRE------MQRLK--V-RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~------m~~~~--~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
+.-=.+....+...|+.++|..+.-+ +.+-+ + ..+..+...+...+.+...+--|.++|+.|-. ...-
T Consensus 703 ~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---~ksi 779 (1081)
T KOG1538|consen 703 IKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---LKSL 779 (1081)
T ss_pred cCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---HHHH
Confidence 11112334455566777776655321 12211 1 12345555555666667777778888877744 2333
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCc----------hHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESG----------DYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
++.....+++.+|..+.++.-+.-|+-.. -+..--++|.++|+..||..+++++...-+
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 44555677888888887776655544211 233345678888888888888888865544
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.31 E-value=0.01 Score=55.42 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...+..+..+|.+.|++++|...+++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe 103 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE 103 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666666666666666666555
No 222
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.041 Score=48.76 Aligned_cols=150 Identities=9% Similarity=0.013 Sum_probs=86.2
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhhcCCHHH
Q 041942 316 KCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV----GVLVACSHAGKVEE 388 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~g~~~~ 388 (498)
..|+..+|-..++++.+ .|...+...=.+|...|+...-...+++.... ..|+...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35666666666666653 25566666666777777777766666666543 234432222 22344556777777
Q ss_pred HHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCC----CCchHHHHHHHHHhCCCchHHHHHH
Q 041942 389 GKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKD----ESGDYVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 389 a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (498)
|++.-++..+ ++|. .......|+.+++.+..++--..-.. -...|-..+-.+...+.++.|+++|
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777766644 4554 22233666777777666654322111 1234555566666677777788777
Q ss_pred HHhhhCCCccCCc
Q 041942 457 KLMDDSDIKKQPG 469 (498)
Q Consensus 457 ~~m~~~~~~~~~~ 469 (498)
+.=+-+...++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 7665555554444
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.29 E-value=0.0045 Score=37.62 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=20.4
Q ss_pred HHhhCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 041942 409 YGVHGDVELGRLANKRLLNMRKDESGDYVLLSN 441 (498)
Q Consensus 409 y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 441 (498)
|...|++++|++.|+++++.+|+|+.+|..|+.
T Consensus 11 ~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 11 YRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 445555666666666666667777777766653
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.28 E-value=0.029 Score=45.01 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH----hcCCCCChh
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD----EYNIEPNIR 407 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~ 407 (498)
....++..+...|++++|..+++++.... +.+...|..++.++...|+...|.++++++.+ +.|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 44556677778888888888888888832 23577888888888888888888888877654 467777744
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.15 E-value=0.48 Score=43.90 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=40.7
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC-------ChhhHHHHHHHHHh---CCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041942 207 VMITGYAKQGEMEKANELFNEVPKR-------DVVSWNAMISGYVL---CGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276 (498)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 276 (498)
.++-+|....+++...++.+.+... ....-....-++.+ .|+.++|+.++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334455555566666666555532 11222234445555 6777777777777555555667777766665
Q ss_pred HH
Q 041942 277 AC 278 (498)
Q Consensus 277 ~~ 278 (498)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.17 Score=44.57 Aligned_cols=95 Identities=15% Similarity=0.025 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhc---CCHHHHHHHHhcCCC---CChhHHHH
Q 041942 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC---GSIERAIEVFLGMRD---RDVSTWST 340 (498)
Q Consensus 267 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~---~~~~~~~~ 340 (498)
|...|-.|...|...|+.+.|...|.+..+-.|..|+.. ..+..++... ....++..+|+++.. .|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~--~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEIL--LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 445555555555555555555555544444444333322 2232222221 123445555554442 23444555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
|...+...|++.+|...|+.|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555555555555555555
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.99 E-value=0.026 Score=39.43 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRL--KVR---PT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+...+...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777888888888888888888887642 112 22 45677777888888888888888887765
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.98 E-value=1.4 Score=41.23 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC-CCCChhHHH------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYN-IEPNIRHYG------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~y~------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
..|...+.+..+..-++.|+.+|.++.+ .| +.+++..|+ ..|+..-|-++|+-.+...|+++...+.....+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4566677777888889999999999999 67 566655444 788999999999999999999998888888888
Q ss_pred HhCCCchHHHHHHHH
Q 041942 444 ASRGEWNRVEKVRKL 458 (498)
Q Consensus 444 ~~~g~~~~A~~~~~~ 458 (498)
..-++-..|..+|+.
T Consensus 477 i~inde~naraLFet 491 (660)
T COG5107 477 IRINDEENARALFET 491 (660)
T ss_pred HHhCcHHHHHHHHHH
Confidence 888888888888773
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.96 E-value=0.25 Score=45.74 Aligned_cols=172 Identities=12% Similarity=0.030 Sum_probs=80.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHhhc---ccchhhHHHHHHHHHHhCCCCChHHHHHHHH
Q 041942 75 TIIRGSAQSQNPLDAVFLYTQMEKCS---IKPNKFTFSFVLKACTR---LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIY 148 (498)
Q Consensus 75 ~ll~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 148 (498)
.++-+|-...+++..+++.+.|.... +.-....-....-++.+ .|+.++|++++..++...-.+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44555666666666666666665431 11111111122223334 5666666666666555444556666665555
Q ss_pred HHHhc---------CChhHHHHhhccCCCCCcchHHH--HHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 041942 149 FHANC---------GDLNTASVLFDGDAKMDVVAWSS--LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGE 217 (498)
Q Consensus 149 ~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 217 (498)
.|-.. ...++|...|.+.-+.+...|+. ++..+...|...+...-++++ -..+-....+.|.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i-------~~~l~~llg~kg~ 298 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKI-------GVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHH-------HHHHHHHHHhhcc
Confidence 44321 23666777776544433222221 122222233211111111110 0111111222222
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 041942 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262 (498)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 262 (498)
.+. ..+-..+..++.++.-.|+.++|...+++|.+.
T Consensus 299 ~~~---------~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEK---------MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccc---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 111 134445566777777777788777777777765
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.92 E-value=1 Score=39.03 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=41.9
Q ss_pred hHHHhhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 407 RHYGVHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 407 ~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|.+.|.+..|..-++.+++.-|+.+ .++-.|..+|...|-.++|...-+- +..+.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v-l~~N~ 234 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV-LGANY 234 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH-HHhcC
Confidence 345588888888888888887766654 4566778889999999998887444 44454
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.91 E-value=0.092 Score=39.74 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=56.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC---------hhHHHhh
Q 041942 343 GGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---------IRHYGVH 412 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~y~~~ 412 (498)
-++...|+.+.|++.|.+.+. +.| ....|+.-..++.-+|+.++|.+-+++..+-.|-+.. ...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 356677888888888888777 444 4677777777877788888888777777763333311 2334466
Q ss_pred CChHHHHHHHHHHHccCC
Q 041942 413 GDVELGRLANKRLLNMRK 430 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~ 430 (498)
|+.+.|+..|+.+-++..
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 666666666666655443
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.90 E-value=0.65 Score=40.15 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=60.7
Q ss_pred hCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhH--HH------------
Q 041942 347 FHGFAEESIAMFREMQRLKV--RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH--YG------------ 410 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~--y~------------ 410 (498)
+.|++++|.+.|+.+..... +-...+...++.++-+.++++.|...+++....++-.|++.- |.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 44455555555554443210 112334444444445555555555555554444444444110 00
Q ss_pred --hhCChHHHHHHHHHHHccCCCCCc-----------------hHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 411 --VHGDVELGRLANKRLLNMRKDESG-----------------DYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 411 --~~g~~~~a~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
...-...|...|+.+++.-|++.- .=..+++.|.+.|.+--|..-+++|.+.
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 122233444555555555565432 1235678899999999999999999887
No 233
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.85 E-value=0.013 Score=53.27 Aligned_cols=47 Identities=9% Similarity=-0.055 Sum_probs=25.3
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHhhcccchhhHHHH
Q 041942 80 SAQSQNPLDAVFLYTQMEKCSIKPNK----FTFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~ 127 (498)
+++.|+....+.+|+...+.| .-|. .+|..|-.+|.-.+++++|+++
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 566666666666776666655 2222 2344444444445555555544
No 234
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=2.4 Score=42.94 Aligned_cols=171 Identities=11% Similarity=-0.047 Sum_probs=106.9
Q ss_pred hhhccCCChHHHHHhcccCCCCChh---hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhh
Q 041942 47 GSVVIPGAINYAHKMFVKITEPDTF---MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 123 (498)
+..+ ..-++-|..+-+.-..+... ........+.+.|++++|..-|-+-... +.|. .+|.-+........
T Consensus 343 iL~k-K~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 343 ILFK-KNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKN 415 (933)
T ss_pred HHHH-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHH
Confidence 3444 45566666665554422211 2333444566788999888887766542 3332 34555666666777
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcc--hHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 041942 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV--AWSSLTAGYARRGELSMARSLFDEMPVRD 201 (498)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 201 (498)
--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+...+ ... -....+..+.+.+-.++|..+-.+... .
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-h 492 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATKFKK-H 492 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-C
Confidence 77788888888865 555557788999999999888888877652 222 244566677777777777766655442 2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC
Q 041942 202 LVSWNVMITGYAKQGEMEKANELFNEVPK 230 (498)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 230 (498)
...... .+-..+++++|.+.+..+.-
T Consensus 493 e~vl~i---lle~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 493 EWVLDI---LLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHH---HHHHhcCHHHHHHHHhcCCH
Confidence 222222 23456788888888888764
No 235
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.85 E-value=0.13 Score=42.23 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=80.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hh
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPTE------ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IR 407 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~ 407 (498)
..-+...|++++|..-|.++++ +.|.. ..|..-..++++.+.++.|+.-..+.++ +.|+ +.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAe 176 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAE 176 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHH
Confidence 3446678899999999998888 34432 2344444577888999999888888777 6675 66
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHH--HHHHHHhhhCC
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV--EKVRKLMDDSD 463 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~m~~~~ 463 (498)
.|.+...+++|...|+++++.+|....+-...+..--....-.++ .+++.+++..|
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 788889999999999999999998776666665543333322222 23445554444
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.84 E-value=0.47 Score=37.12 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=67.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 311 IDMYAKCGSIERAIEVFLGMRDR------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
.....+.|++++|.+.|+.+... ....--.++.+|...+++++|...+++.++....-...-|...+.+++.-.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 33445677888888888777642 234555677778888888888888888877432212345555555555433
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 385 KVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
..+. .+..+.. ..-| .+....|...|+.+++.-|++..+
T Consensus 97 ~~~~---~~~~~~~---~drD------~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 97 QDEG---SLQSFFR---SDRD------PTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred Hhhh---HHhhhcc---cccC------cHHHHHHHHHHHHHHHHCcCChhH
Confidence 3222 2222211 1111 234568888899999888887543
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.79 E-value=1.2 Score=42.44 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD--R---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLV 378 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~ 378 (498)
..|..+.-+.|+.++|.+.+++|.+ | +......|+.++...+.+.++..++.+-.+...+.+ ..+|+..+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 4566666778888888888887753 2 334667788888888888888888888654332222 345655543
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.68 E-value=0.11 Score=45.11 Aligned_cols=102 Identities=9% Similarity=0.014 Sum_probs=81.3
Q ss_pred ChHHHHHhcccCC--CCChhhHHHHHHHHhc-----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcc--------
Q 041942 54 AINYAHKMFVKIT--EPDTFMYNTIIRGSAQ-----SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-------- 118 (498)
Q Consensus 54 ~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-------- 118 (498)
.+-.....|.... ..|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.||..+-+-
T Consensus 49 ~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 49 SLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred cccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHH
Confidence 4445566666666 6778888888887754 356777788889999999999999999999987653
Q ss_pred --------cchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC
Q 041942 119 --------LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155 (498)
Q Consensus 119 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 155 (498)
.+-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2233468899999999999999999999999988775
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=95.56 E-value=0.58 Score=44.21 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCC---CCC---hhHHHHHHHHHHh---------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 320 IERAIEVFLGMR---DRD---VSTWSTLIGGLAF---------HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 320 ~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
.+.|..+|.+.. +-| ...|..+..++.. .....+|.++-++..+.+ +-|......+..+..-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456666776655 322 3334433333322 234566777777777744 345777777777777778
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hhHH--H-----hhCChHHHHHHHHHHHccCCCCCchHH--HHHHHHHhCCCchHHHH
Q 041942 385 KVEEGKKYFKLMRDEYNIEPN-IRHY--G-----VHGDVELGRLANKRLLNMRKDESGDYV--LLSNIYASRGEWNRVEK 454 (498)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~p~-~~~y--~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~ 454 (498)
+.+.|..+|++... +.|+ +..| . -.|+.++|.+.++++++++|.-..+-. ..+..|+ ....++|+.
T Consensus 353 ~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHH
Confidence 89999999999876 7787 2222 2 588999999999999999987654333 3333444 445677777
Q ss_pred HHHH
Q 041942 455 VRKL 458 (498)
Q Consensus 455 ~~~~ 458 (498)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 7654
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=95.52 E-value=0.26 Score=46.42 Aligned_cols=126 Identities=7% Similarity=0.048 Sum_probs=88.3
Q ss_pred hHH--HHHHHHHHhC-----CCHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhh---------cCCHHHHHHHHHHhH
Q 041942 336 STW--STLIGGLAFH-----GFAEESIAMFREMQR-LKVRPT-EITFVGVLVACSH---------AGKVEEGKKYFKLMR 397 (498)
Q Consensus 336 ~~~--~~l~~~~~~~-----~~~~~A~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 397 (498)
..| ...+.+.... ...+.|..+|.+... ..+.|+ ...|..+..++.. .....+|.++.++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 245678889999882 226676 4555555443322 223556666666666
Q ss_pred HhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 398 DEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 398 ~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+ +.|+ .....-.++++.|...|+++..++|+.+.+|...++.+.-.|+.++|.+.+++..+...
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 6 5554 22223667799999999999999999999999999999999999999999999765443
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.52 E-value=0.4 Score=45.18 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=40.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh----hHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDV----STWSTLIGGLAFHGFAEESIAMFREMQRL 364 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 364 (498)
+...++.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666777777777777777766543 332 24677777777777777777777777663
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.45 E-value=1.5 Score=37.80 Aligned_cols=188 Identities=16% Similarity=0.101 Sum_probs=89.1
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHH-HH
Q 041942 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-VSTWSTLIG-GL 345 (498)
Q Consensus 270 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~-~~ 345 (498)
.+......+...+.+..+...+...............+..+...+...++...+...+..... ++ ......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 333444444444444444444422221111122223333344444444455555555544432 11 111222222 45
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC---------hhHHHhh
Q 041942 346 AFHGFAEESIAMFREMQRLKVRP----TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---------IRHYGVH 412 (498)
Q Consensus 346 ~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~y~~~ 412 (498)
...|+++.|...+.+... ..| ....+......+...++.+.+...+...... .++ ...|...
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHc
Confidence 566666666666666544 222 1223333333345556666666666666551 222 2233355
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
++++.|...+..+....|.....+..+...+...|..+++...+++..+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55666666666666666654455555555555555666666666665543
No 243
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.42 E-value=1 Score=35.66 Aligned_cols=43 Identities=5% Similarity=-0.026 Sum_probs=21.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc
Q 041942 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117 (498)
Q Consensus 74 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 117 (498)
..++..+...+.+.....+++.+...+ ..+...++.++..+++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 344555555555555555555555443 2344455555555543
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.42 E-value=2.4 Score=39.83 Aligned_cols=35 Identities=3% Similarity=-0.193 Sum_probs=27.0
Q ss_pred hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC
Q 041942 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (498)
.+..+++...|..+.++.|....+|..++..+.+.
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 46778888888888888888877887777776554
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.41 E-value=0.35 Score=47.15 Aligned_cols=110 Identities=18% Similarity=0.100 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhhcCCHHHHHHHHHHhHHhcCCCCChh---------HHHhhCChHHHH
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVL-VACSHAGKVEEGKKYFKLMRDEYNIEPNIR---------HYGVHGDVELGR 419 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---------~y~~~g~~~~a~ 419 (498)
..+.|.+++..+.+ --|+...|...- +.+...|++++|.+.++.......--|... .+....++++|.
T Consensus 248 ~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 44555666666555 235444433222 444555666666666655432101111111 112556666666
Q ss_pred HHHHHHHccCCCCCchHHHH-HHHHHhCCCc-------hHHHHHHHHhhh
Q 041942 420 LANKRLLNMRKDESGDYVLL-SNIYASRGEW-------NRVEKVRKLMDD 461 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~m~~ 461 (498)
..|.++.+.+..+...|..+ +.++...|+. ++|.+++++...
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 66666665555544444443 3445556777 777777777653
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.41 E-value=1.6 Score=42.08 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 041942 143 RNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222 (498)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 222 (498)
.+.++..+.+.|..+.|+++.+. + ..-.....+.|+.+.|.++.++.. +...|..|.+...+.|+++-|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 44555555555555555544221 1 122333445555555555544433 3445555555555666666666
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
+.|.+..+ |..|+-.|...|+.++..++.+.....|- ++....++.-.|+.++..+++
T Consensus 368 ~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 368 ECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 66555432 44455555555665555555554444431 333333344444544444443
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=1.2 Score=39.45 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=19.6
Q ss_pred hcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCC
Q 041942 183 RRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVP 229 (498)
Q Consensus 183 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (498)
..|+..+|..+|.... +.+...-..++.+|...|+.+.|..++..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3344444444444333 2223333344444444444444444444443
No 248
>PRK15331 chaperone protein SicA; Provisional
Probab=95.31 E-value=0.13 Score=41.17 Aligned_cols=84 Identities=11% Similarity=0.061 Sum_probs=52.2
Q ss_pred HHhcCCHHHHHHHHhcCC--C-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 041942 314 YAKCGSIERAIEVFLGMR--D-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 390 (498)
+...|++++|..+|+-+. + -|..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 445666666666666443 2 245556666666666777777777776665533 233444555566777777777777
Q ss_pred HHHHHhHH
Q 041942 391 KYFKLMRD 398 (498)
Q Consensus 391 ~~~~~~~~ 398 (498)
..|+..+.
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77776665
No 249
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.31 E-value=0.25 Score=38.08 Aligned_cols=82 Identities=7% Similarity=-0.049 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHh---------------CCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHH-
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEK---------------CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK- 133 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---------------~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 133 (498)
..++..+|-++++.|+++....+++..-. ....|+..+..+++.+++..+++..|.++++...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34556666666677776666666655421 12345566666666666666666666666665554
Q ss_pred hCCCCChHHHHHHHHHHH
Q 041942 134 YGFEFNRFVRNSLIYFHA 151 (498)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~ 151 (498)
.+++.+..+|..|+.-..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 345555556665555433
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.27 E-value=0.23 Score=37.73 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=61.0
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhcCCH
Q 041942 313 MYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT---EITFVGVLVACSHAGKV 386 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~ 386 (498)
+....|+++.|++.|.+.. ......||.-..++.-+|+.++|+.-+++..+..-... ...|.--...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4567788888888887654 34778888888888888888888888888877321122 22333333456677888
Q ss_pred HHHHHHHHHhHH
Q 041942 387 EEGKKYFKLMRD 398 (498)
Q Consensus 387 ~~a~~~~~~~~~ 398 (498)
+.|..-|+...+
T Consensus 132 d~AR~DFe~AA~ 143 (175)
T KOG4555|consen 132 DAARADFEAAAQ 143 (175)
T ss_pred HHHHHhHHHHHH
Confidence 888888887766
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.14 Score=46.91 Aligned_cols=108 Identities=11% Similarity=-0.030 Sum_probs=76.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHhhCChHHHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYGVHGDVELGR 419 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~~g~~~~a~ 419 (498)
-...|.+.|++..|..-|++.+.. -... +.-+.++.......- ..+.-| ...|.+.+.+..|.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~~~-----------~~~~~ee~~~~~~~k---~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LEYR-----------RSFDEEEQKKAEALK---LACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hhcc-----------ccCCHHHHHHHHHHH---HHHhhHHHHHHHhhhhHHHHH
Confidence 356778888888888888887652 1111 111112222111111 112222 55677999999999
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+..+++++++|+|..+...-+.+|...|+++.|+..|+++.+...
T Consensus 278 ~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 278 ESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999987443
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.07 E-value=1.9 Score=41.60 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=105.0
Q ss_pred HHHhcCChhHHHHhhc--cCCC-CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 041942 149 FHANCGDLNTASVLFD--GDAK-MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF 225 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 225 (498)
...-.|+++++.++.+ .+.+ -+....+.++..+-+.|.++.|+++..+ + ..-.+...+.|+++.|.++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHH
Confidence 3445678888655543 2221 1344578888999999999999998543 2 23456678999999999988
Q ss_pred hhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchh
Q 041942 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305 (498)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (498)
++.. +...|..|.....+.|+++-|...|.+.. -+..|+-.|...|+.+.-.++. +.....+.
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~-~~a~~~~~----- 404 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLA-KIAEERGD----- 404 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHH-HHHHHTT------
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHH-HHHHHccC-----
Confidence 8775 66799999999999999999999998775 2566777788888888777776 44444432
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
++....++...|+.++..+++.+..
T Consensus 405 -~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 -INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2445556666788888887776543
No 253
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.97 E-value=1.3 Score=35.87 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=27.3
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 041942 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260 (498)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 260 (498)
.+++.+...|++-+|.++.+....-+......++.+..+.++...-..+++-..
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555666666666655443333333445555555555554444444443
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.92 E-value=1.7 Score=35.33 Aligned_cols=31 Identities=6% Similarity=-0.004 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhhcccch
Q 041942 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121 (498)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 121 (498)
+.++.+.+.+++|+...|..+++.+.+.|++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3344444445555555555555555555543
No 255
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.92 E-value=0.9 Score=34.72 Aligned_cols=137 Identities=10% Similarity=0.093 Sum_probs=74.7
Q ss_pred hcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYF 393 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 393 (498)
-.|.+++..+++.+... .+..-+|-+|.-....-+-+-..+.++..-+- +..+ ..-...++.++...|...+-..+-
T Consensus 14 ldG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGki-FDis~C~NlKrVi~C~~~~n~~se~vD~A 92 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKI-FDISKCGNLKRVIECYAKRNKLSEYVDLA 92 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-GGG-S-THHHHHHHHHTT---HHHHHH
T ss_pred HhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhh-cCchhhcchHHHHHHHHHhcchHHHHHHH
Confidence 35666777777766553 34445555555444444555555555544321 1111 122344555666655543322211
Q ss_pred HHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 394 KLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 394 ~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
- ......|+-+.-.++++.+...+..+|.....++.+|.+.|+..+|-++++++-++|++
T Consensus 93 L------------d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 93 L------------DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp H------------HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred H------------HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 1 11124677777888888887666778899999999999999999999999999999985
No 256
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.82 E-value=0.056 Score=31.00 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 435 DYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+|..|+.+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999965
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.81 E-value=1.6 Score=34.55 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=86.5
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCCh
Q 041942 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187 (498)
Q Consensus 108 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (498)
...++..+...+.......+++.+...+ ..+...++.++..|++.++ ......++. ..+......++..|.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3456666666777888888888888776 3677788888888887643 444555552 23445556677888888888
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 041942 188 SMARSLFDEMPVRDLVSWNVMITGYAKQ-GEMEKANELFNEVPKRDVVSWNAMISGYVL 245 (498)
Q Consensus 188 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 245 (498)
+++.-++.++. -|...+..+... ++.+.|.+++.+. .+...|..++..+..
T Consensus 86 ~~~~~l~~k~~-----~~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l~ 137 (140)
T smart00299 86 EEAVELYKKDG-----NFKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHhhc-----CHHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 88888887764 233344444444 7888888888874 355677777776654
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.81 E-value=0.7 Score=40.32 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCC
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKV--RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGD 414 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~ 414 (498)
.|+.-+..+ ..|++..|...|...++..- .-....+-.|..++...|+++.|..+|..+.++++-.|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~---------- 212 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP---------- 212 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC----------
Confidence 466666544 46668888888888877531 11234556677888888888888888888777544333
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.-|..+..|+.+..+.|+.++|-.+|++..++
T Consensus 213 ----------------KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 213 ----------------KAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred ----------------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33445556666666666666666666665543
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.66 E-value=0.34 Score=42.22 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC--C----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHH
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRD--R----DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRP-TEITFVGVL 377 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~l~ 377 (498)
.|+.-+. +.+.|++..|...|....+ | ....+--|..++...|++++|..+|..+.+.- -.| -+.++..|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 3456778888888876654 2 23455558899999999999999999988742 112 256778888
Q ss_pred HHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 378 VACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
.+..+.|+.++|...|+++.++++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 888999999999999999988543
No 260
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.55 E-value=0.14 Score=40.90 Aligned_cols=128 Identities=14% Similarity=0.061 Sum_probs=78.6
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHH
Q 041942 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190 (498)
Q Consensus 111 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 190 (498)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566677778888888888888766666788888888888888888888888874333 3334566677777777777
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 041942 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 248 (498)
.-++.++...+.. +..+...++++.|.+.+... .+...|..++..+...+.
T Consensus 90 ~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 7666655411110 00112233444444333333 346677777777766654
No 261
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.37 E-value=6.8 Score=41.62 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHH
Q 041942 436 YVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
...|+.++...|..++|.++-+.
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~Lq~~ 1209 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARALQKA 1209 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 56677778888887777765433
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.36 E-value=0.41 Score=42.38 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=53.4
Q ss_pred HHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh-----CCCccCCc
Q 041942 409 YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD-----SDIKKQPG 469 (498)
Q Consensus 409 y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 469 (498)
+..+|+++.+...+++.++.+|-+...|..++.+|...|+...|+..|+++.+ .|+.|.+.
T Consensus 163 ~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 163 LIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 44588899999999999999999999999999999999999999999998875 56666443
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.33 E-value=0.08 Score=32.01 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
|.++..++.+|.+.|++++|+++|+++.+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45789999999999999999999999988654
No 264
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.29 E-value=0.27 Score=40.44 Aligned_cols=88 Identities=9% Similarity=0.004 Sum_probs=71.4
Q ss_pred HHHhhcCCHHHHHHHHHHhHHhcCCCCC----------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 378 VACSHAGKVEEGKKYFKLMRDEYNIEPN----------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
.-+.+.|++++|..-+...+...+-.|. ...+.+.+.++.|.....++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3457789999999999998873111111 223338999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhhCCCc
Q 041942 448 EWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~ 465 (498)
.+++|++-|+++.+....
T Consensus 183 k~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPS 200 (271)
T ss_pred hHHHHHHHHHHHHHhCcc
Confidence 999999999999876543
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=2 Score=38.05 Aligned_cols=159 Identities=8% Similarity=-0.081 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 041942 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98 (498)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 98 (498)
.++-+.+-+....+....+..... ... .|++.+|..+|+... +.+...--.+...|...|+.+.|..++..+..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~--~~~-~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKE--LIE-AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhh--hhh-ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 345555555554555555555554 344 788888888888776 33455666777888889999999999988765
Q ss_pred CCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC-----Ccch
Q 041942 99 CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM-----DVVA 173 (498)
Q Consensus 99 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~ 173 (498)
.--.........-|..+.+.........+-...-.. +-|...-..+...+...|+.+.|.+.+=.+.+. |...
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 321222222222344555555555555555555442 336667777888888888888887766544432 3334
Q ss_pred HHHHHHHHHhcC
Q 041942 174 WSSLTAGYARRG 185 (498)
Q Consensus 174 ~~~l~~~~~~~~ 185 (498)
-..++..+.-.|
T Consensus 275 Rk~lle~f~~~g 286 (304)
T COG3118 275 RKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhcC
Confidence 444444444333
No 266
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=0.95 Score=37.29 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=56.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV-----GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYG 410 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~ 410 (498)
+...+...+++++|..-++..... |....+. .|.+.....|.+|+|...++.... .++.+- .+.+.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHH
Confidence 345677788999999888877752 3333333 334567788889999988887766 444442 44445
Q ss_pred hhCChHHHHHHHHHHHccC
Q 041942 411 VHGDVELGRLANKRLLNMR 429 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~ 429 (498)
..|+-++|+..|+++++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 6677777777777777655
No 267
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.06 E-value=9.7 Score=40.56 Aligned_cols=105 Identities=14% Similarity=0.197 Sum_probs=53.9
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCCchHH
Q 041942 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV--TMLSLLTACADLGDLEVG 287 (498)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~a 287 (498)
..+...+.+++|.-.|+...+ ...-+.+|..+|+|.+|+.+-.++-.. -+.. +-..|+.-+...++.-+|
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhH
Confidence 333445555555555554433 122355666667777777666655311 1111 113455556666666666
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
-++..+..... ...+..|++...+++|..+-....
T Consensus 1019 a~il~e~~sd~---------~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1019 AKILLEYLSDP---------EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhcCH---------HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 66653332211 234445666666777766655444
No 268
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.98 E-value=8.1 Score=39.36 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=32.8
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcc
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 118 (498)
-.| .+|-.|.|.|++++|.++..+.... .......+...+..+...
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 345 4566788999999999999666543 456667788888888765
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.94 E-value=6.8 Score=38.36 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=106.3
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC-CCc---------chHHHHHHHHHh----cCChHHH
Q 041942 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK-MDV---------VAWSSLTAGYAR----RGELSMA 190 (498)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~l~~~~~~----~~~~~~A 190 (498)
.-+|.-+... +| .....+++...-.||-+.+++.+....+ .+. ..|+..+..++- ..+.+.|
T Consensus 177 ~G~f~L~lSl-LP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555543 23 3345566666677777777777754333 111 234444444433 4567889
Q ss_pred HHHHhcCC--CCCcchHHHH-HHHHHhcCChHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 041942 191 RSLFDEMP--VRDLVSWNVM-ITGYAKQGEMEKANELFNEVPKR-------DVVSWNAMISGYVLCGMNKQALEMFEEMR 260 (498)
Q Consensus 191 ~~~~~~~~--~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 260 (498)
.+++..+. -|+...|... .+.+...|++++|.+.|+..... ....+--+.-.+....+|++|...|..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 99999888 4776655443 46677889999999999976531 22345556777888899999999999999
Q ss_pred hCCCCCCHHHHHHHHHHH-hccCCc-------hHHHHHHHHH
Q 041942 261 SVGERPDDVTMLSLLTAC-ADLGDL-------EVGKKVHCTL 294 (498)
Q Consensus 261 ~~g~~p~~~~~~~li~~~-~~~~~~-------~~a~~~~~~~ 294 (498)
+.. ..+..+|.-+..+| ...|+. ++|..++.+.
T Consensus 333 ~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 333 KES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 764 44566666555544 456666 7777777433
No 270
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.82 E-value=0.25 Score=41.22 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=59.6
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeEEEecCCeeEEEecC
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFN 486 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (498)
.|...|-..-|+-.|.+++.+.|+-+.+++.|+--+...|+++.|.+.|+...+ .+|+..+..++ -++.-|..|
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E----LDp~y~Ya~lN-Rgi~~YY~g 147 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAHLN-RGIALYYGG 147 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc----cCCcchHHHhc-cceeeeecC
Confidence 355778888899999999999999999999999999999999999999998854 45666666666 555555554
No 271
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.77 E-value=2.4 Score=32.53 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=75.5
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh---HHHHHHHHHhcCCH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH---GNALIDMYAKCGSI 320 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 320 (498)
.-.|..++..+++.+...+. +..-++-+|--....-+-+-..+.+ ..-|--.|... ...++.+|.+.|..
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~L----dsIGkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETL----DSIGKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHH----HHHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHH----HHHhhhcCchhhcchHHHHHHHHHhcch
Confidence 34577777777777776432 3333444444444444444444444 22222222222 13455555555432
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc
Q 041942 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400 (498)
Q Consensus 321 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 400 (498)
.......+..+..+|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+ .
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-k 149 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE-K 149 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-T
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-h
Confidence 233455677788888888888888888763 367888888888999999999999999888877 4
Q ss_pred CC
Q 041942 401 NI 402 (498)
Q Consensus 401 ~~ 402 (498)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 54
No 272
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.74 E-value=0.21 Score=44.62 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=15.2
Q ss_pred hhCChHHHHHHHHHHHccCCCCCc
Q 041942 411 VHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
..|+.++|.+.++.++++.|++..
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHH
Confidence 345566666677777777776543
No 273
>PRK09687 putative lyase; Provisional
Probab=93.67 E-value=5.2 Score=36.06 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=25.7
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
.+++..+...-+.++.+.|+ ..|...+-...+.+. .....+.++...|.. +|...+
T Consensus 202 ~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred cCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHH
Confidence 34455555555555555555 334444433333321 123445555555553 344444
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=1.3 Score=39.84 Aligned_cols=141 Identities=11% Similarity=0.012 Sum_probs=74.4
Q ss_pred cccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHH----HHHHHHHhcCChHH
Q 041942 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWS----SLTAGYARRGELSM 189 (498)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~l~~~~~~~~~~~~ 189 (498)
-.|++.+|-..++++++. .|.|...+..-=.+|+..|+.+.-...++++.+ +|...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345555555555555553 344555555555666666666666666655544 2322222 22334455666666
Q ss_pred HHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC--C-----hhhHHHHHHHHHhCCChHHHHHHHHH
Q 041942 190 ARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPKR--D-----VVSWNAMISGYVLCGMNKQALEMFEE 258 (498)
Q Consensus 190 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-----~~~~~~l~~~~~~~g~~~~a~~~~~~ 258 (498)
|.+.-++.. +.|.-.-.++...+--.|+..++.++..+-... . ..-|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666655 333334445555556666666666666554431 0 11122233344455777777777764
No 275
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.24 E-value=7.8 Score=36.82 Aligned_cols=118 Identities=11% Similarity=0.025 Sum_probs=85.2
Q ss_pred hhchhhh-HHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHH
Q 041942 15 CTNLRTL-KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAV 90 (498)
Q Consensus 15 ~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~ 90 (498)
.|++..| ++++..++...-.|+.......| +.. .|+++.+...+.... .....+-..+++.....|+++.|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i---~~~-lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI---FSH-LGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH---HHH-hhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 4677665 66777777776667766655544 466 789999999887664 556677888999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCC
Q 041942 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137 (498)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 137 (498)
.+-+-|....+. +++.........-..|-++++...++++.....+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 999999876543 4444433333344567888999889888765533
No 276
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.16 E-value=1 Score=39.31 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=69.9
Q ss_pred HHHHhhCC--CCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC------------
Q 041942 222 NELFNEVP--KRDVVSWNAMISGYVLC-----GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG------------ 282 (498)
Q Consensus 222 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~------------ 282 (498)
+..|..+. ++|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 45666666666655433 556667777788888888888888888887664432
Q ss_pred ----CchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCH-HHHHHHHhcC
Q 041942 283 ----DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI-ERAIEVFLGM 330 (498)
Q Consensus 283 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~ 330 (498)
+-+-++.++ +.|+..|+.||..+-..|++++.+.+-. .+..++.-.|
T Consensus 134 HYP~QQ~C~I~vL-eqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVL-EQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHH-HHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 123466677 7778888888888888888888776653 3334443333
No 277
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=4.4 Score=41.19 Aligned_cols=174 Identities=13% Similarity=0.055 Sum_probs=83.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC-CCCc--chHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 041942 176 SLTAGYARRGELSMARSLFDEMP-VRDL--VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 252 (498)
.-+..+++...++-|+.+-+.-. .++. .....-.+-+.+.|++++|...|-+...--.. ..++.-|....+...-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHH
Confidence 34445555555666665554433 1111 12222233445666677666666554421111 1234444555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 041942 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332 (498)
Q Consensus 253 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (498)
..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++. +.........|. ...+..+.+.+-.++|.-+-.....
T Consensus 417 t~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI-~~~~~g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 417 TSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFI-SKCDKGEWFFDV---ETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHH-hcCCCcceeeeH---HHHHHHHHHhChHHHHHHHHHHhcc
Confidence 6666666666643 3333455666777777766666555 222211111122 2344455555555555554443332
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHH
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFRE 360 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (498)
+......++. ..+++++|++++..
T Consensus 492 -he~vl~ille---~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 492 -HEWVLDILLE---DLHNYEEALRYISS 515 (933)
T ss_pred -CHHHHHHHHH---HhcCHHHHHHHHhc
Confidence 3333333332 34566666666554
No 278
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.86 E-value=8.7 Score=36.34 Aligned_cols=95 Identities=8% Similarity=0.020 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHH-hcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC-------C-----------CChhhHHHHHHH
Q 041942 19 RTLKQIQALVTI-NGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-------E-----------PDTFMYNTIIRG 79 (498)
Q Consensus 19 ~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-------~-----------~~~~~~~~ll~~ 79 (498)
+..........+ .|..+=...+..+. .|. .+.+..|.+.+..-. . +|...=+..+..
T Consensus 62 d~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~--~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~s 137 (549)
T PF07079_consen 62 DLMEKQLMELRQQFGKSAYLPLFKALV--AYK--QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHS 137 (549)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHH--HHH--hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHH
Confidence 333333333333 34333344444444 344 578888877764432 1 122233455677
Q ss_pred HhccCChHHHHHHHHHHHhCCCC----CCHhhHHHHHHHhhc
Q 041942 80 SAQSQNPLDAVFLYTQMEKCSIK----PNKFTFSFVLKACTR 117 (498)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~li~~~~~ 117 (498)
+...|++.++..++++|...=++ .+..+|+.++-.+++
T Consensus 138 LIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 138 LIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 78999999999999988664333 688888886555554
No 279
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=5.9 Score=33.88 Aligned_cols=61 Identities=8% Similarity=0.135 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH-------------hhCChHHHHHHHHHHHccCCCCC
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------VHGDVELGRLANKRLLNMRKDES 433 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-------------~~g~~~~a~~~~~~~~~~~~~~~ 433 (498)
.+..+...-...+++.+|+.+++++.. ..+..+..-|. -..+.-.+.+.+++..+++|.-.
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~-~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVAR-SSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 444444444556677777777777666 45554433333 22455666677777777777643
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.63 E-value=0.32 Score=27.79 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~ 362 (498)
|+.|...|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666666666666666666643
No 281
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=13 Score=37.74 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=56.5
Q ss_pred HHHHHhcCChhHHHHhhccCCCC-----CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 041942 147 IYFHANCGDLNTASVLFDGDAKM-----DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA 221 (498)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 221 (498)
++.+.+.+.+++|+.+.+..... -...+..++..+.-.|++++|-...-.|...+..-|.--+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 44555666777777766544331 1234556666677777777777776666655555565555555555555444
Q ss_pred HHHHhhCCC-CChhhHHHHHHHHHh
Q 041942 222 NELFNEVPK-RDVVSWNAMISGYVL 245 (498)
Q Consensus 222 ~~~~~~~~~-~~~~~~~~l~~~~~~ 245 (498)
..++-.-.. -+...|..++..+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 333322222 244566666666655
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.43 E-value=8 Score=34.88 Aligned_cols=20 Identities=10% Similarity=-0.097 Sum_probs=13.9
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 041942 343 GGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~ 362 (498)
..+.+.++|+.|.++|+-..
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556788888888887543
No 283
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.23 E-value=27 Score=40.51 Aligned_cols=278 Identities=9% Similarity=0.024 Sum_probs=150.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC----C--CCcchHHHHHHHHHhcCChHHHHHHHhh-CCCCChhhHHHHHHHHHhCCC
Q 041942 176 SLTAGYARRGELSMARSLFDEMP----V--RDLVSWNVMITGYAKQGEMEKANELFNE-VPKRDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~----~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 248 (498)
.+..+-.+.+.+..|...++.-. + .....|..+...|...+++|....+... ...++. + .-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~-~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--Y-QQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--H-HHHHHHHhhcc
Confidence 55567778899999999998832 1 1223455555689999999888887773 333332 2 23445567799
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhH-HHHHHHHHhcCCHHHHHHHH
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG-NALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~ 327 (498)
+..|...|+.+.+.+ ++...+++.++......|.++......+...... .+....+ +.=+.+-.+.++++.....+
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999999775 3446677777777777777777766552222221 1222222 22233445666666666655
Q ss_pred hcCCCCChhHHHHH--HHHHHhCCCHH--HHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHh-------------
Q 041942 328 LGMRDRDVSTWSTL--IGGLAFHGFAE--ESIAMFREMQRLKVRP--------T-EITFVGVLVACS------------- 381 (498)
Q Consensus 328 ~~~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~~~~p--------~-~~~~~~l~~~~~------------- 381 (498)
. ..+..+|... +..+.+..+-+ .-.+..+.+.+.-+.| + ...|..++....
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKK 1618 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4 2233333322 11111111110 0001111111110000 0 112222222111
Q ss_pred -------------------hcCCHHHHHHH---HHHhHHhcCCCCC-----hhHHH-------hhCChHHHHHHHHHHHc
Q 041942 382 -------------------HAGKVEEGKKY---FKLMRDEYNIEPN-----IRHYG-------VHGDVELGRLANKRLLN 427 (498)
Q Consensus 382 -------------------~~g~~~~a~~~---~~~~~~~~~~~p~-----~~~y~-------~~g~~~~a~~~~~~~~~ 427 (498)
+.+....+.+- +++..-....+|+ ...|. +.|.++.|..++-.+.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 01111111111 1111111222333 22222 58888888888877776
Q ss_pred cCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
.. -+.++...++.+...|+-..|+.++++-.+...
T Consensus 1699 ~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1699 SR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 55 467888899999999999999999999887665
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.22 E-value=2.1 Score=38.93 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=12.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHH
Q 041942 436 YVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
...++++|.+.|+.+.|..-|+.
T Consensus 249 ~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHhcccHhHHHHHHHH
Confidence 33455555555555555554444
No 285
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.10 E-value=0.38 Score=26.89 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666667777777777777776666
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.91 E-value=0.24 Score=27.67 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.+|..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998764
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.67 E-value=3.7 Score=41.17 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC-CCchHHHHHHHHhhhCCCc
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASR-GEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 465 (498)
+.+.|...+.++-+.++ +.+...+...+.-- ++++.+.-.+..+.+.|.+
T Consensus 379 ~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred CHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 45556666666655542 22222222222211 6666666666666665554
No 288
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.60 E-value=7.9 Score=33.08 Aligned_cols=190 Identities=18% Similarity=0.146 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HH
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVP-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT-AC 278 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~ 278 (498)
+......+...+.+..+...+.... ......+......+...+.+..+...+.........+. ........ .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHH
Confidence 3334444444455444444444432 12333444455555555666666666666654432221 11111122 45
Q ss_pred hccCCchHHHHHHHHHHHhhcC--CcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---C-ChhHHHHHHHHHHhCCCHH
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSG--VAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---R-DVSTWSTLIGGLAFHGFAE 352 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~ 352 (498)
...|+++.+...+..... ... ......+......+...++.+.+...+..... . ....+..+...+...++++
T Consensus 141 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 141 YELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 566666666666644422 111 01112222222224445555555555554442 1 2344555555555566666
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 353 ESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|...+..... ..|+ ...+..+...+...|..+.+...+.+...
T Consensus 220 ~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 220 EALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666655 2333 22222222222244445555555544444
No 289
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.53 E-value=15 Score=36.11 Aligned_cols=180 Identities=11% Similarity=0.076 Sum_probs=108.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041942 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277 (498)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 277 (498)
+..+|..-+.--.+.|+.+.+.-+|++..-| =...|-..+.-....|+.+-|..++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3457788888888899999999998887654 2234555555555558888888777665544333333222222222
Q ss_pred HhccCCchHHHHHHHHHHHhhcCCcchh-hHHHHHHHHHhcCCHHHHH---HHHhcCCC--CChhHHHHHHHH-----HH
Q 041942 278 CADLGDLEVGKKVHCTLLDMTSGVAKVL-HGNALIDMYAKCGSIERAI---EVFLGMRD--RDVSTWSTLIGG-----LA 346 (498)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~---~~~~~~~~--~~~~~~~~l~~~-----~~ 346 (498)
.-..|++..|..+++....+. |+.. .-..-+....+.|+.+.+. .++....+ .+....+.+.-- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 345679999999995544443 3322 2122344556678888777 44444432 233333333322 33
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
-.++.+.|..++.++.+. ++++...|..+++-+...+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 367889999999999884 3455667777776655544
No 290
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.20 E-value=9.1 Score=33.02 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC-------CChhhHHHHHHHHHhCCChHHHH
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVPK-------RDVVSWNAMISGYVLCGMNKQAL 253 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~ 253 (498)
|...|-.+.-..++..|++.++.-.+ .+..+...|+.+| ..|+.+++-
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 33444444445555555555555221 2334444555554 334444443
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.14 E-value=0.32 Score=27.19 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.+|..++.+|...|++++|+..|++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999997643
No 292
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=9.4 Score=32.94 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--------CCh-hHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCC-CHHHHHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD--------RDV-STWSTLIGGLAFHGFAEESIAMFREMQRLK--VRP-TEITFVG 375 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~p-~~~~~~~ 375 (498)
......+.+..++++|-..|.+-.. ++. ..|-..|-.|....++..|...++.-.+.+ ..+ +..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 3344455566666665554443321 111 235555666677778888888888755422 112 3567777
Q ss_pred HHHHHhhcCCHHHHHHHHH
Q 041942 376 VLVACSHAGKVEEGKKYFK 394 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~ 394 (498)
|+.+|- .|+.+++..++.
T Consensus 234 LL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 234 LLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHhc-cCCHHHHHHHHc
Confidence 777764 477777666553
No 293
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.87 E-value=16 Score=35.24 Aligned_cols=157 Identities=8% Similarity=0.040 Sum_probs=95.0
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041942 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377 (498)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 377 (498)
...|.....+++..+....+++-.+.+..+|.. .+...|..++.+|... ..++-..+|+++.+ ..-+......-+
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHH
Confidence 344555566777888887777777777777763 4667788888888877 56777888888887 444444444433
Q ss_pred HHHhhcCCHHHHHHHHHHhHHhcCCCCC------hhHHHh-----hCChHHHHHHHHHHHccCCC--CCchHHHHHHHHH
Q 041942 378 VACSHAGKVEEGKKYFKLMRDEYNIEPN------IRHYGV-----HGDVELGRLANKRLLNMRKD--ESGDYVLLSNIYA 444 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~y~~-----~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~ 444 (498)
--+...++...+..+|.++... +-|. .+.|.+ ..+.+.-.+...++...... -...+..+-.-|.
T Consensus 139 a~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 139 ADKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333447788888888777662 3332 111211 12233333333333221111 1234556667777
Q ss_pred hCCCchHHHHHHHHhhh
Q 041942 445 SRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 445 ~~g~~~~A~~~~~~m~~ 461 (498)
...++++|++++.-+.+
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 88899999999885544
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.87 E-value=7.6 Score=31.52 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=57.8
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHH-----HHHHhcCChHHHHHHHhhCCCC--ChhhHHH-----HHHHHHhCCCh
Q 041942 182 ARRGELSMARSLFDEMPVRDLVSWNVMI-----TGYAKQGEMEKANELFNEVPKR--DVVSWNA-----MISGYVLCGMN 249 (498)
Q Consensus 182 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-----l~~~~~~~g~~ 249 (498)
.+.+..++|+.-|..+.+.+.-.|-.|. ......|+...|...|+++... .+....- -...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4455556666666665544444443332 2234556666666666666531 1111111 12234455666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 041942 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 250 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 296 (498)
+....-.+.+-..|-+.-...-..|.-+-.+.|++..|.+.|...+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66666665555444333333344455555666666666666644444
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.86 E-value=0.73 Score=36.13 Aligned_cols=66 Identities=14% Similarity=0.235 Sum_probs=46.2
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCCC---hhHHH-----hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCc
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEPN---IRHYG-----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (498)
...++.+++..++..+.- +.|. ..++. ..|++.+|.++++.+.+-.+..+..-..++.++.-.|+.
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 457888889998888876 4554 33333 788888888888888776666665666666666666654
No 296
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.77 E-value=3.1 Score=37.91 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=55.9
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhhcCCc----chhhHHHHHHHHHhcCCHHHHHHHHhc-------CCCCChh------
Q 041942 274 LLTACADLGDLEVGKKVHCTLLDMTSGVA----KVLHGNALIDMYAKCGSIERAIEVFLG-------MRDRDVS------ 336 (498)
Q Consensus 274 li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~~~~~------ 336 (498)
+..++...+.++++.+.|+..+.-..-.. ...++..|...|.+..++++|.-+..+ ..-.|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33444445555555555544443322211 233445555666666665555433322 2212221
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQR----LKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLM 396 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 396 (498)
+...|.-++...|+.-.|.+.-++..+ .|-++- ......+...|...|+.+.|..-++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122233344555655555555555433 222221 233444445566666666665555443
No 297
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.64 E-value=0.36 Score=25.14 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHH
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
.+...++.++...|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4567889999999999999998863
No 298
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.43 E-value=17 Score=34.96 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CC--hhHHHHHH
Q 041942 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RD--VSTWSTLI 342 (498)
Q Consensus 268 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~--~~~~~~l~ 342 (498)
..+-..+..++.+.|+.++|.+.++++++..+......+...|+.++...+.+.++..++.+..+ |. ..+|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 34445566777888999999999988887765444555667889999999999999998877653 22 34566654
Q ss_pred HH
Q 041942 343 GG 344 (498)
Q Consensus 343 ~~ 344 (498)
--
T Consensus 339 Lk 340 (539)
T PF04184_consen 339 LK 340 (539)
T ss_pred HH
Confidence 43
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.38 E-value=0.7 Score=25.64 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556666666666666666666655
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.33 E-value=0.52 Score=27.72 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=24.3
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+++.|+..|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3688999999999999999999999864
No 301
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.33 E-value=2.8 Score=37.30 Aligned_cols=77 Identities=5% Similarity=-0.039 Sum_probs=60.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHH-----hCCCCChHHHHHH
Q 041942 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK-----YGFEFNRFVRNSL 146 (498)
Q Consensus 72 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 146 (498)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|...|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777778888899999999888764 55788899999999999999999888888765 5777877777666
Q ss_pred HHH
Q 041942 147 IYF 149 (498)
Q Consensus 147 ~~~ 149 (498)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.22 E-value=3.2 Score=34.36 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC------hhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 041942 307 GNALIDMYAKCGSIERAIEVFLGMRDRD------VSTWSTLIGGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 362 (498)
+..+...|.+.|+.+.|.+.|.++.+.. ...+-.+|+.....+++..+...+.+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445555555555555555555554321 2234445555555555555555554443
No 303
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.01 E-value=6.5 Score=34.33 Aligned_cols=161 Identities=14% Similarity=0.175 Sum_probs=87.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHh---CCC--CCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcch----hhH
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRS---VGE--RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV----LHG 307 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~---~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 307 (498)
..++..+.+.|++++.+..|++|.. +.+ .-+....+.++.-.+...+.+....+|+.-+..-...-+. .+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 3455666666666666666666542 111 1233345555554444445444444443222221111111 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---------------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRDR---------------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEI 371 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~ 371 (498)
..|...|...+.+.+..+++.++.+. =...|..-|..|..+++-.+-..+|++...-. --|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 35666777777777777777665421 13467777888888888888788888765521 235444
Q ss_pred HHHHHHHHH-----hhcCCHHHHHHHHHHhHH
Q 041942 372 TFVGVLVAC-----SHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 372 ~~~~l~~~~-----~~~g~~~~a~~~~~~~~~ 398 (498)
... .++-| .+.|++++|-.-|-+.-+
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 443 44433 567888887654444433
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=1.4 Score=39.09 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=63.8
Q ss_pred hcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC-CCCh-----hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 041942 31 NGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-EPDT-----FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN 104 (498)
Q Consensus 31 ~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-~~~~-----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~ 104 (498)
.|.+.++.+...++. .... ...++++...+-.+. .|+. .+-...++.+. .-++.+++.++..=.+.|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~-v~~~-~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVD-VISS-REEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhh-cccc-ccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 355666666666666 4444 566777766665554 3322 11222233332 2366677777777777788888
Q ss_pred HhhHHHHHHHhhcccchhhHHHHHHHHHHhC
Q 041942 105 KFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135 (498)
Q Consensus 105 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 135 (498)
..++..+|..+.+.++...|.++...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888777777777776543
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.88 E-value=1.1 Score=35.83 Aligned_cols=77 Identities=14% Similarity=0.158 Sum_probs=57.8
Q ss_pred HHHHHHHHH---HHhhcCCHHHHHHHHHHhHHhcCCCCC---hhHH-----HhhCChHHHHHHHHHHHccCCCCCchHHH
Q 041942 370 EITFVGVLV---ACSHAGKVEEGKKYFKLMRDEYNIEPN---IRHY-----GVHGDVELGRLANKRLLNMRKDESGDYVL 438 (498)
Q Consensus 370 ~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y-----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (498)
..+...|+. .-.+.++.+.+..++.-+.- ++|. ..++ ...|++.+|.++++.+.+-.|..+..-..
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 344555553 44677899999999999977 6666 3333 38999999999999988888888777777
Q ss_pred HHHHHHhCCCc
Q 041942 439 LSNIYASRGEW 449 (498)
Q Consensus 439 l~~~~~~~g~~ 449 (498)
++.++...|+.
T Consensus 84 lA~CL~~~~D~ 94 (160)
T PF09613_consen 84 LALCLYALGDP 94 (160)
T ss_pred HHHHHHHcCCh
Confidence 77777777764
No 306
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.79 E-value=5.4 Score=36.18 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=84.6
Q ss_pred ccchHHHHHHhhc-h----hhhHHHHHHHHHhcCCcChHHHHHHHHhhhhc-cC----CChHHHHHhcccCC-------C
Q 041942 5 RHRSSRLWKKCTN-L----RTLKQIQALVTINGFNSDSSALRELIYSGSVV-IP----GAINYAHKMFVKIT-------E 67 (498)
Q Consensus 5 ~~~~~~~l~~~~~-~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~----~~~~~A~~~~~~~~-------~ 67 (498)
...++.+|...+. + +....+++.+.+.|+..+..++-+.+. +... .. .....|.++++.|. .
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~-i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALI-ILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHH-HHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 3445555555554 4 345678889999999888877766443 2221 01 23457888888886 3
Q ss_pred CChhhHHHHHHHHhccCC----hHHHHHHHHHHHhCCCCCCHh--hHHHHHHHhhccc--chhhHHHHHHHHHHhCCCCC
Q 041942 68 PDTFMYNTIIRGSAQSQN----PLDAVFLYTQMEKCSIKPNKF--TFSFVLKACTRLL--YRNMGFCVHGKIVKYGFEFN 139 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~----~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~ 139 (498)
++-.++..++.. ...+ .+.+..+|+.+.+.|+..+-. ..+.++..+.... ....+.++++.+.+.|+++.
T Consensus 139 ~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 139 PEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIK 216 (297)
T ss_pred ccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccc
Confidence 444556666544 3333 356778888888877766433 3333333332222 24577888888888888877
Q ss_pred hHHHHHHHH
Q 041942 140 RFVRNSLIY 148 (498)
Q Consensus 140 ~~~~~~l~~ 148 (498)
...|..+.-
T Consensus 217 ~~~yp~lGl 225 (297)
T PF13170_consen 217 YMHYPTLGL 225 (297)
T ss_pred cccccHHHH
Confidence 666654443
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.70 E-value=3.3 Score=34.32 Aligned_cols=64 Identities=8% Similarity=-0.056 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHhhcccchhhHHHHHHHHHHh
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN--KFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 134 (498)
..+..+...|++.|+.+.|++.|.++.+....|. ...+..+|+...-.+++..+...+.+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3577788888888888888888888877654443 345677777777788888887777776653
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.54 E-value=9 Score=30.29 Aligned_cols=99 Identities=10% Similarity=0.001 Sum_probs=61.0
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHH
Q 041942 346 AFHGFAEESIAMFREMQRLKVRPTEITFVG-VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 346 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~ 424 (498)
...++.+++..++..|.- +.|+..-... -...+...|+|++|.++|+.+.+..+..| +.+|...+-.
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p----------~~kAL~A~CL 88 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP----------YGKALLALCL 88 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch----------HHHHHHHHHH
Confidence 346778888888888776 5665332222 22445677888888888888776322222 2233333333
Q ss_pred HHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 425 LLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
....+| .|...+......|...+|..+.+.+.
T Consensus 89 ~al~Dp----~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 89 NAKGDA----EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HhcCCh----HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 222233 37777777778888888888888876
No 309
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=1.5 Score=37.40 Aligned_cols=49 Identities=12% Similarity=0.019 Sum_probs=31.5
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
+..+++.....-.++++++|+.......++.++.....+++|+..+++.
T Consensus 56 k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 56 KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 4445555555556666666666666666666666666777777666666
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.91 E-value=0.68 Score=36.82 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=49.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC
Q 041942 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155 (498)
Q Consensus 76 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 155 (498)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666677788888888888876665566777788888888877767766666511 11222334444555555
Q ss_pred hhHHHHhhc
Q 041942 156 LNTASVLFD 164 (498)
Q Consensus 156 ~~~A~~~~~ 164 (498)
+++|.-++.
T Consensus 86 ~~~a~~Ly~ 94 (143)
T PF00637_consen 86 YEEAVYLYS 94 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 311
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.78 E-value=0.94 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999999865
No 312
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.40 E-value=0.83 Score=25.66 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=19.0
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHhcCChhHHH
Q 041942 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 160 (498)
++.++.. +-+...|+.+..+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 345667777777777777777664
No 313
>PRK09687 putative lyase; Provisional
Probab=88.38 E-value=19 Score=32.50 Aligned_cols=138 Identities=7% Similarity=-0.078 Sum_probs=64.9
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CchHHHHHHHHHHHhhcCCcchhhHH
Q 041942 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG-DLEVGKKVHCTLLDMTSGVAKVLHGN 308 (498)
Q Consensus 230 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (498)
.++..+-...+.++.+.++ +++...+-.+.+ .++...-...+.++...+ ....+...+...+. .++..+-.
T Consensus 139 D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~ 210 (280)
T PRK09687 139 DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRI 210 (280)
T ss_pred CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHH
Confidence 3455555555555555554 344444444443 233344444444444432 12233333323331 23334444
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 380 (498)
..+.++.+.|+....-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 211 ~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 211 EAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 55556666665433333333333333 233455666666664 566666666652 34555555445444
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.25 E-value=13 Score=30.34 Aligned_cols=28 Identities=7% Similarity=0.037 Sum_probs=15.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+-..|+-+-.+.|++.+|...|+.+..
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445555555556666666666555543
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.03 E-value=5.9 Score=31.81 Aligned_cols=107 Identities=8% Similarity=-0.013 Sum_probs=68.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV-LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~ 419 (498)
++..-...++.+++..++..+.- ++|.......+ ...++..|+|.+|..+|+.+....+..|- .+|.
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~----------~kAL 83 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY----------AKAL 83 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH----------HHHH
Confidence 33445578899999999999988 67875544433 35678999999999999998774333332 2222
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
..+--....+ ..|...+......+-...+..+.+.+....
T Consensus 84 lA~CL~~~~D----~~Wr~~A~evle~~~d~~a~~Lv~~Ll~~~ 123 (160)
T PF09613_consen 84 LALCLYALGD----PSWRRYADEVLESGADPDARALVRALLARA 123 (160)
T ss_pred HHHHHHHcCC----hHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 2222222212 236666666666666667777777776543
No 316
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.89 E-value=12 Score=34.08 Aligned_cols=128 Identities=13% Similarity=0.183 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cC----CchHHHHHHHHHHHhhcC--CcchhhHHHHHHHHHhcCCH
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACAD--LG----DLEVGKKVHCTLLDMTSG--VAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 320 (498)
+++.+.+++.|.+.|++-+..+|.+....... .. ...++..+|+.+.+.++. .++-..+.+|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788889999988888777664443333 22 356778888444444333 2223333334322 23332
Q ss_pred ----HHHHHHHhcCCC-----CC-hhHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041942 321 ----ERAIEVFLGMRD-----RD-VSTWSTLIGGLAFHGF--AEESIAMFREMQRLKVRPTEITFVGVLV 378 (498)
Q Consensus 321 ----~~A~~~~~~~~~-----~~-~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 378 (498)
+.++.+|+.+.+ .| ......++........ ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 334445554443 23 3333444433322222 3477888888888888887766665543
No 317
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.76 E-value=21 Score=32.25 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=49.1
Q ss_pred HHHHHHHHHhccCCch---HHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHH
Q 041942 270 TMLSLLTACADLGDLE---VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIG 343 (498)
Q Consensus 270 ~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~ 343 (498)
++..++.++...+..+ +|..+++......+.+| .++-.-+..+.+.++.+++.+++.+|... ....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 4556666666665543 44445522322233223 23333455555567777777777766532 2233444444
Q ss_pred HHHh--CCCHHHHHHHHHHHHHCCCCCCH
Q 041942 344 GLAF--HGFAEESIAMFREMQRLKVRPTE 370 (498)
Q Consensus 344 ~~~~--~~~~~~A~~~~~~m~~~~~~p~~ 370 (498)
.+.. ......|...+..+....+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3311 22334566666666554455544
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.75 E-value=0.67 Score=25.48 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
++..++.++.+.|++++|.+.|+++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46678999999999999999999997643
No 319
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.73 E-value=38 Score=35.26 Aligned_cols=189 Identities=13% Similarity=0.098 Sum_probs=102.8
Q ss_pred HhccCCchHHHHHHHHHHHhhcCCcch-------hhHHHHH-HHHHhcCCHHHHHHHHhcCCC--------CChhHHHHH
Q 041942 278 CADLGDLEVGKKVHCTLLDMTSGVAKV-------LHGNALI-DMYAKCGSIERAIEVFLGMRD--------RDVSTWSTL 341 (498)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l 341 (498)
.....++.+|..+..+....-+ .|+. ..+++|- ......|++++|.++-+.... +....+..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456778888888744433332 2221 1222221 223346888888887765442 356677888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHH--HHHhhcCC--HHHHHHHHHHhHHhcCC-CCC--------
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEI---TFVGVL--VACSHAGK--VEEGKKYFKLMRDEYNI-EPN-------- 405 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~l~--~~~~~~g~--~~~a~~~~~~~~~~~~~-~p~-------- 405 (498)
..+..-.|++++|..+..+..+..-.-+.. .|..+. ..+...|+ ..+....+......+.. .|-
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888889999999999888776532122222 233332 34556673 33333344444332111 111
Q ss_pred hhHHHhhCChHHHHHHHHHHHcc----CCCCC---chHHHHHHHHHhCCCchHHHHHHHHhhhCCCccC
Q 041942 406 IRHYGVHGDVELGRLANKRLLNM----RKDES---GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 467 (498)
...+...-+++.+..-....++. .|... ..+..|+.++...|+.++|...++++......+.
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 11111111244444333333322 22222 2234788999999999999999999976655443
No 320
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.30 E-value=19 Score=32.05 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=48.9
Q ss_pred hHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 407 RHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 407 ~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
..|..+|.+.+|.++-++++.++|-+...|-.++..|...|+--.|..-|+++.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455899999999999999999999999999999999999998888888887753
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.21 E-value=18 Score=35.59 Aligned_cols=151 Identities=21% Similarity=0.155 Sum_probs=96.7
Q ss_pred HhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC
Q 041942 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230 (498)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 230 (498)
.-.|+++.|..++..+.+ ...+.++..+.+.|-.++|+++- +|+.. -.....+.|+++.|.++..+.
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lgrl~iA~~la~e~-- 663 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLGRLDIAFDLAVEA-- 663 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcCcHHHHHHHHHhh--
Confidence 345777777776666553 23445666677778777777652 22221 123445778888888776654
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHH
Q 041942 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310 (498)
Q Consensus 231 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 310 (498)
.+..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+-+....+- +..+..|.. |.-
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la-~~~~~~g~~------N~A 727 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA-SLAKKQGKN------NLA 727 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH-HHHHhhccc------chH
Confidence 3566788899999999999999888876653 445666666667766555444 444444421 233
Q ss_pred HHHHHhcCCHHHHHHHHhcC
Q 041942 311 IDMYAKCGSIERAIEVFLGM 330 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~ 330 (498)
.-+|...|+++++.+++.+-
T Consensus 728 F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 728 FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHcCCHHHHHHHHHhc
Confidence 44566778888888887654
No 322
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.02 E-value=9.6 Score=27.66 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 041942 19 RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98 (498)
Q Consensus 19 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 98 (498)
+.|-.+-+.+...+-.-..++...+.+ +.. .|++++|+.+.+....||...|-.|-. .+.|-.+.+..-+..|..
T Consensus 22 qEA~tIAdwL~~~~~~~E~v~lIRlsS--LmN-rG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 22 QEANTIADWLHLKGESEEAVQLIRLSS--LMN-RGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHH--HHc-cchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 566777777766654444444444443 344 688888888888888888888876654 356666666677777776
Q ss_pred CCCCCCHhhHHH
Q 041942 99 CSIKPNKFTFSF 110 (498)
Q Consensus 99 ~~~~p~~~~~~~ 110 (498)
.| .|....|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 66 555544433
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.00 E-value=11 Score=27.37 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=33.6
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH
Q 041942 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271 (498)
Q Consensus 211 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 271 (498)
.+...|++++|..+.+...-||...|-+|... +.|..+++..-+.+|..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45566666666666666666666666555443 4555555555566666555 4433333
No 324
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.83 E-value=2.2 Score=30.66 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=35.0
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
...+++.++.+|+|..+...++..+...|++++|++.+-++.+...
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3456667777899989999999999999999999998888876643
No 325
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.82 E-value=19 Score=29.97 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=55.4
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcC-CcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCh--hHHHHHHHHHHhCCCHH
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV--STWSTLIGGLAFHGFAE 352 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 352 (498)
..+...+++++|...++..+..... ......--.|.......|.+++|+.+++....++- .....-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 3455666677776666333322111 01111112355666778888888888888777643 33455567788888888
Q ss_pred HHHHHHHHHHHCC
Q 041942 353 ESIAMFREMQRLK 365 (498)
Q Consensus 353 ~A~~~~~~m~~~~ 365 (498)
+|..-|++....+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888887765
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.71 E-value=2.1 Score=24.96 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666665543
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.53 E-value=1.5 Score=24.32 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777666655
No 328
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.20 E-value=1.7 Score=23.61 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
|+.+.+..+|++++...|.++..|..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4678888999999988888888888877643
No 329
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.13 E-value=4.9 Score=32.88 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
++|..-|++++.++|+...++..++.+|...+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 34555788888889998888888888888765
No 330
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.00 E-value=50 Score=33.98 Aligned_cols=307 Identities=8% Similarity=-0.041 Sum_probs=141.0
Q ss_pred ChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhh---HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH-hhHHHH
Q 041942 36 DSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM---YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK-FTFSFV 111 (498)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 111 (498)
+...|..... .+. .|++..+.++...+....... |..|...+. ....++...++++-. -.|-. ..-...
T Consensus 33 ~r~~f~~A~~-a~~--~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~ 105 (644)
T PRK11619 33 QRQRYQQIKQ-AWD--NRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIRANP---TLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHH-HHH--CCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHHHCC---CCchHHHHHHHH
Confidence 4556666666 444 588988888888775332332 333322221 224454444444332 22322 233334
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccC---CCCCcchHHHHHHHHHhcCCh-
Q 041942 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD---AKMDVVAWSSLTAGYARRGEL- 187 (498)
Q Consensus 112 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~- 187 (498)
+..+.+.+++......+ . ..+.+.........+....|+.++|....... ....+..++.++..+.+.|..
T Consensus 106 l~~La~~~~w~~~~~~~----~-~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 106 VNELARREDWRGLLAFS----P-EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHccCHHHHHHhc----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCC
Confidence 44555666666555422 1 12455666677788888888877665554432 112455666666666655543
Q ss_pred -----------------HHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHH--hCC
Q 041942 188 -----------------SMARSLFDEMPVRDLV-SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV--LCG 247 (498)
Q Consensus 188 -----------------~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~g 247 (498)
..|..+...+ .++.. ....++..+ .+...+...+.... ++...-..++.++. ...
T Consensus 181 ~~d~w~R~~~al~~~~~~lA~~l~~~l-~~~~~~~a~a~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~ 255 (644)
T PRK11619 181 PLAYLERIRLAMKAGNTGLVTYLAKQL-PADYQTIASALIKLQ---NDPNTVETFARTTG-PTDFTRQMAAVAFASVARQ 255 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-ChhHHHHHHHHHHHH---HCHHHHHHHhhccC-CChhhHHHHHHHHHHHHHh
Confidence 2222222222 11111 111112211 12222222222221 11111111111211 234
Q ss_pred ChHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHH
Q 041942 248 MNKQALEMFEEMRSVG-ERPDD--VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g-~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (498)
+.+.|..++....... ..+.. .....+.......+....+...+..... . ..+......-+..-.+.++++.+.
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~-~--~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM-R--SQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc-c--cCCcHHHHHHHHHHHHccCHHHHH
Confidence 5567777777664332 22222 1222332222332224444444422111 1 123333334444445677777777
Q ss_pred HHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 041942 325 EVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 325 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 362 (498)
..+..|... ...-.-=+.+++...|+.++|..+|+++.
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777776531 22222335566566777777777777763
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.98 E-value=6.1 Score=28.79 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
+..+-++.+...++.|++......+++|.+.+++..|.++++-++.+.|
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 5566677777778889999999999999999999999999988877533
No 332
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.61 E-value=0.82 Score=41.13 Aligned_cols=82 Identities=11% Similarity=0.153 Sum_probs=46.6
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHH
Q 041942 382 HAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453 (498)
Q Consensus 382 ~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (498)
..|.++.|++.+...++ +.|. ...|.+.++...|++-+..+++++|+...-|-.-..+....|+|.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~---lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE---LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccc---cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34556666666555544 3443 222225555566666666666666666655655555666666666666
Q ss_pred HHHHHhhhCCCcc
Q 041942 454 KVRKLMDDSDIKK 466 (498)
Q Consensus 454 ~~~~~m~~~~~~~ 466 (498)
..+....+.++.+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 6666666665544
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.60 E-value=4.6 Score=36.08 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=23.4
Q ss_pred CHHHHHHHHhcCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 319 SIERAIEVFLGMRD----RDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 319 ~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
++++++.++..=.+ +|..+++.+++.+.+.+++.+|..+...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34444444433322 4555555566666666665555555555544
No 334
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.54 E-value=15 Score=32.78 Aligned_cols=143 Identities=13% Similarity=0.023 Sum_probs=103.3
Q ss_pred hhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC-----CCChhhHHHHHHHHhc-c-CChHHHHH
Q 041942 19 RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-----EPDTFMYNTIIRGSAQ-S-QNPLDAVF 91 (498)
Q Consensus 19 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~-~-g~~~~A~~ 91 (498)
++...+++.....-......-|..++. + ..-+-+|+++|+... -.|..+-..+++.... . .....-.+
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~Y~~LVk----~-N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE 187 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFNYWDLVK----R-NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE 187 (292)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHH----h-hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH
Confidence 345566666555433333333777775 1 456789999998543 3455666667777655 2 24444455
Q ss_pred HHHHHHh-CCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHh-CCCCChHHHHHHHHHHHhcCChhHHHHhhccC
Q 041942 92 LYTQMEK-CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY-GFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166 (498)
Q Consensus 92 ~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (498)
+.+.+.. .|-.++..+....|..++..+++....+++...... +..-|...|..+++.-...|+..-..++.+++
T Consensus 188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 5555543 345788889999999999999999999999988775 66778999999999999999999999999764
No 335
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.43 E-value=24 Score=29.96 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSV 262 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 262 (498)
.+|--+...+...|+.++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 46777888888888888888888877643
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.32 E-value=2.1 Score=38.61 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=37.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|+.-....+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3457778888888888877766 455 677777777777777777766665555443
No 337
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.29 E-value=1.7 Score=26.18 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 437 VLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|+.+|...|+.+.|.+++++....|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4578899999999999999999986654
No 338
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.13 E-value=7.6 Score=27.98 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHH
Q 041942 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132 (498)
Q Consensus 86 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 132 (498)
.-++.+-++.+....+.|++......+++|-+.+|+..|.++++-.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455556666666677777777777777777777777777777665
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.62 E-value=18 Score=30.40 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=40.3
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc--CCcchhhHHHHHHHHHhcCCH
Q 041942 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS--GVAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 320 (498)
+.+.|+ +.|...|-++...+.--++.....+.. |....+.+++..++-+.+.... ..+++..+..|+..|.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334444 456666666655553333333333333 3334555666665544444322 145556666666666666666
Q ss_pred HHHH
Q 041942 321 ERAI 324 (498)
Q Consensus 321 ~~A~ 324 (498)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 5553
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.60 E-value=6.7 Score=28.24 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
+.=++.+-++.+...++.|++......+++|.+.+++..|.++++-++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33456666777777788899999999999999999999999999887753
No 341
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.14 E-value=20 Score=30.78 Aligned_cols=24 Identities=4% Similarity=-0.169 Sum_probs=19.1
Q ss_pred hhCChHHHHHHHHHHHccCCCCCc
Q 041942 411 VHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
..+++.+|..+|+++.....+++.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchH
Confidence 788999999999998866555543
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.05 E-value=59 Score=33.36 Aligned_cols=149 Identities=11% Similarity=0.036 Sum_probs=82.3
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCC---CHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhc
Q 041942 77 IRGSAQSQNPLDAVFLYTQMEKCSIKP---NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC 153 (498)
Q Consensus 77 l~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (498)
++.+.+.+.+++|+++-+.-.. ..| ........|..+.-.|+++.|-...-.|.. -+...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 3456677777777777665543 233 234556666777777777777776666653 2455566666666666
Q ss_pred CChhHHHHhhccCCC-CCcchHHHHHHHHHhcCChHHHHHHHhcCC--------------------CCCcchHHHHHHHH
Q 041942 154 GDLNTASVLFDGDAK-MDVVAWSSLTAGYARRGELSMARSLFDEMP--------------------VRDLVSWNVMITGY 212 (498)
Q Consensus 154 g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------------------~~~~~~~~~l~~~~ 212 (498)
++......++=.... .+...|..++..+.. .+...-.++..+.. ..+...-..|+..|
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 665554444433332 345556666666655 33333333222221 01112223366667
Q ss_pred HhcCChHHHHHHHhhCCCCC
Q 041942 213 AKQGEMEKANELFNEVPKRD 232 (498)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~~~ 232 (498)
...+++..|..++-...+++
T Consensus 516 l~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHccChHHHHHHHHhccChH
Confidence 77777777777776666543
No 343
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.02 E-value=34 Score=30.50 Aligned_cols=128 Identities=12% Similarity=-0.052 Sum_probs=60.0
Q ss_pred CCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHH----HHhCCCCCCHhhHHHHHHHhhcccchh-hHHH
Q 041942 52 PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQ----MEKCSIKPNKFTFSFVLKACTRLLYRN-MGFC 126 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~~~~~li~~~~~~~~~~-~a~~ 126 (498)
++++++|.+++-.. ...+.+.|+...|-++-.. +.+.+.++|......++..+...+.-+ .-..
T Consensus 3 ~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 45666776665332 2334556665554443333 334456666665555555544332211 2233
Q ss_pred HHHHHHH---hC--CCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHH
Q 041942 127 VHGKIVK---YG--FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190 (498)
Q Consensus 127 ~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 190 (498)
+.+.+++ .| ..-++.....+...|.+.|++.+|+..|=....++...+..++..+...|...++
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~ 140 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA 140 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch
Confidence 3333332 22 2235667777778888888888887776555444444443445444445544443
No 344
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.01 E-value=41 Score=31.42 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP---TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
....+|..++..+.+.|+++.|...+.++...+... .+.....-+...-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678888999999999999999999888743211 233444445566677888999988888776
No 345
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.76 E-value=4.2 Score=25.69 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=13.1
Q ss_pred hhCChHHHHHHHHHHHccCCCCCc
Q 041942 411 VHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
+.|++++|.+..+.+++.+|++..
T Consensus 13 kl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 13 KLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HhhhHHHHHHHHHHHHhhCCCcHH
Confidence 555666666666666666666543
No 346
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.43 E-value=63 Score=33.24 Aligned_cols=97 Identities=5% Similarity=-0.122 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhcCCcChHHHH-HHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 041942 21 LKQIQALVTINGFNSDSSALR-ELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC 99 (498)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 99 (498)
..++...+.++.-.|-..... .-+. .+.+ .+++....+.+.. ++.+...-.....+....|+.++|......+-..
T Consensus 82 ~~ev~~Fl~~~~~~P~~~~Lr~~~l~-~La~-~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 82 AVQVTNFIRANPTLPPARSLQSRFVN-ELAR-REDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHH-HHHH-ccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 345555555554333333322 2233 4556 6777777773322 2344544555667777788877777777777655
Q ss_pred CCCCCHhhHHHHHHHhhcccch
Q 041942 100 SIKPNKFTFSFVLKACTRLLYR 121 (498)
Q Consensus 100 ~~~p~~~~~~~li~~~~~~~~~ 121 (498)
| ...+.....++..+.+.|.+
T Consensus 159 g-~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 159 G-KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred C-CCCChHHHHHHHHHHHcCCC
Confidence 5 33455666677666655443
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.32 E-value=11 Score=27.57 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 251 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++....+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 556666777777888999999999999999999999999994444444432 225655554
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.20 E-value=13 Score=31.20 Aligned_cols=67 Identities=12% Similarity=-0.010 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhcc-------CCCCCcchHHHHHHHHHhcCChHHH
Q 041942 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-------DAKMDVVAWSSLTAGYARRGELSMA 190 (498)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A 190 (498)
.|.+.|-.+...+.--++....+|...|. ..+.+++..++.. ....|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443334444444444443 3344444444422 1123455555555555555555554
No 349
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=82.17 E-value=8.5 Score=34.40 Aligned_cols=76 Identities=9% Similarity=-0.042 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 367 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
..|+..|...+....+.|.+.+.-.++.++.+.++.+.| ...|...++++.++.+|.+.+.++|++|..|....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 345666666666666777788888888888775555555 33445889999999999999999999999887665
Q ss_pred HH
Q 041942 441 NI 442 (498)
Q Consensus 441 ~~ 442 (498)
..
T Consensus 184 r~ 185 (435)
T COG5191 184 RM 185 (435)
T ss_pred HH
Confidence 44
No 350
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.04 E-value=2.3 Score=40.29 Aligned_cols=93 Identities=6% Similarity=0.082 Sum_probs=71.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhhcCCHHHHHHHHHHhHHhcCCCCC-h-------hHHHhh
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL-VACSHAGKVEEGKKYFKLMRDEYNIEPN-I-------RHYGVH 412 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~y~~~ 412 (498)
+..+...+.++.|+.++.++++ +.||...|-..= .++.+.+++..|..-+..+++ ..|+ + ....+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 4456677899999999999999 678766554443 788999999999988888877 4576 2 233377
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHH
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLL 439 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l 439 (498)
+.+.+|...|+....+.|+++.+...+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 788999999999999999987654443
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.63 E-value=42 Score=30.03 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=29.7
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhCCCHHHHHHHH
Q 041942 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----RDVSTWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
.++..+...++..++..+++.+-.++++.... .|...|..+|......|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444444555555555555555555543331 25555666666666666554444333
No 352
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.37 E-value=27 Score=27.64 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=55.9
Q ss_pred HHHHhcCCcCh--HHHHHHHHhhhhccCCChHHHHHhcccCC---------CCChhhHHHHHHHHhccCC-hHHHHHHHH
Q 041942 27 LVTINGFNSDS--SALRELIYSGSVVIPGAINYAHKMFVKIT---------EPDTFMYNTIIRGSAQSQN-PLDAVFLYT 94 (498)
Q Consensus 27 ~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~g~-~~~A~~~~~ 94 (498)
.|.+.+..++. ...+.++. .... -+++....++++.+. ..+..+|+.++.+.++..- --.+..+|.
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~-hl~~-~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILN-HLAS-YQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred HhhhcccChhHHHHHHHHHHH-HHHH-ccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHH
Confidence 34444444443 23455565 4444 667777777776664 2344567777777765555 345677777
Q ss_pred HHHhCCCCCCHhhHHHHHHHhhcc
Q 041942 95 QMEKCSIKPNKFTFSFVLKACTRL 118 (498)
Q Consensus 95 ~m~~~~~~p~~~~~~~li~~~~~~ 118 (498)
.|.+.+.+++..-|..+|.++.+-
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcC
Confidence 777766777777777777776554
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.02 E-value=3.2 Score=21.82 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.+|..++..+...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45788889999999999999999887653
No 354
>PRK10941 hypothetical protein; Provisional
Probab=78.96 E-value=9 Score=34.16 Aligned_cols=58 Identities=7% Similarity=-0.007 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
.+-.+|.+.++++.|.++.+.+.. +.|+ ...|.+.|.+..|...++..++.-|+++.+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 334455666666666666666655 4444 334446666666666666666666665543
No 355
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=78.21 E-value=7.1 Score=37.15 Aligned_cols=92 Identities=10% Similarity=0.014 Sum_probs=70.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCH
Q 041942 311 IDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKV 386 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~ 386 (498)
...+.+.+.++.|..++.++.+ | +...|..-..++.+.+++..|+.=..++++ ..|+ ...|..=..+|.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHH
Confidence 4556678899999999998875 4 334555555889999999999999888888 4465 45555556778888899
Q ss_pred HHHHHHHHHhHHhcCCCCChh
Q 041942 387 EEGKKYFKLMRDEYNIEPNIR 407 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~~~ 407 (498)
.+|...|+.... +.|+-.
T Consensus 89 ~~A~~~l~~~~~---l~Pnd~ 106 (476)
T KOG0376|consen 89 KKALLDLEKVKK---LAPNDP 106 (476)
T ss_pred HHHHHHHHHhhh---cCcCcH
Confidence 999999998877 677633
No 356
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.09 E-value=4.4 Score=21.97 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=13.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHH
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555666666666666555
No 357
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.21 E-value=46 Score=29.63 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=59.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHhccCCchHHHHHH---HHHHHhhcCCcchhhHH
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDV-------TMLSLLTACADLGDLEVGKKVH---CTLLDMTSGVAKVLHGN 308 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~li~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~ 308 (498)
+.+-.++.+++++|+..+.++...|+..+.. +...+...|...|+...-.+.. ++.|....-+-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3444555666777777777777666655543 3344555566666554433332 12232222222333344
Q ss_pred HHHHHHHhc-CCHHHHHHHHhcCCC----CC-----hhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 309 ALIDMYAKC-GSIERAIEVFLGMRD----RD-----VSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 309 ~l~~~~~~~-~~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
+|+..+... ..++.-..+.....+ .+ ...-.-++..+.+.|++.+|+.+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 444444332 223333333332221 00 1122346667777888888776544
No 358
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=75.79 E-value=81 Score=30.66 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=67.0
Q ss_pred CCCHHHHH-HHHHHHhhcCCHHHHHHHHHHhHHhcCCCC-ChhHHH---------hhCChHHHHHHHHHHHccCCCCCch
Q 041942 367 RPTEITFV-GVLVACSHAGKVEEGKKYFKLMRDEYNIEP-NIRHYG---------VHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 367 ~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~---------~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
.|+..++. .++.-+-+.|-..+|...+..+.. .+| +...|. ..-+...++.+|+.++.-...|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~---lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE---LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh---CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 46555543 466677778888899999988877 333 344444 2223777888888888766688888
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 436 YVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
|..+...-...|+.+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 98888888888999988888877754
No 359
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.44 E-value=57 Score=32.46 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+.
T Consensus 649 ~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3444444444433322 3334445555555555555555444443
No 360
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.15 E-value=74 Score=30.83 Aligned_cols=108 Identities=13% Similarity=0.026 Sum_probs=61.6
Q ss_pred HHhcCCHHHHHHHHhcCC---CC---------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCCCCCHH-H-
Q 041942 314 YAKCGSIERAIEVFLGMR---DR---------DVSTWSTLIGGLAFHGFAEESIAMFREMQR-------LKVRPTEI-T- 372 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~---~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-------~~~~p~~~-~- 372 (498)
+.-.|++.+|.+++.... ++ .-..||.|...+.+.|.+..+..+|.+..+ .|++|... |
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445678888888775443 11 112356777777777777777777766653 23333210 0
Q ss_pred -----HHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 373 -----FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 373 -----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
+..+-. . ...|...|++-.|.+.|.++......+|..|..|+.+|+...
T Consensus 330 s~nks~eilYN---------------------c-----G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 330 SQNKSMEILYN---------------------C-----GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred hcccchhhHHh---------------------h-----hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 000000 0 112224556666666666666666778889999999987543
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.56 E-value=8 Score=23.27 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=16.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCC
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g 263 (498)
+..+|...|+.+.|..++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777666543
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.54 E-value=13 Score=25.76 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=33.1
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHH
Q 041942 347 FHGFAEESIAMFREMQRLKVRPT--EITFVGVLVACSHAGKVEEGKKYF 393 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 393 (498)
..++.++|+..|+...+.-..|. -.++..++.+++..|++.++.++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888877543332 346677778888888887776643
No 363
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.01 E-value=1.4e+02 Score=32.47 Aligned_cols=253 Identities=9% Similarity=-0.050 Sum_probs=119.7
Q ss_pred CCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHH
Q 041942 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145 (498)
Q Consensus 66 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 145 (498)
..+++.+-...+..+.+.+... +...+....+ .++...-...+.++.+.+........+..+.+ .++..+-..
T Consensus 631 ~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~ 703 (897)
T PRK13800 631 ADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAA 703 (897)
T ss_pred cCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHH
Confidence 3566666666666666655433 4444444443 23444434444444433221112223333332 245555555
Q ss_pred HHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH-H-HH
Q 041942 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEK-A-NE 223 (498)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A-~~ 223 (498)
.+.++...+.-+ ...+...+..+|...-...+.++.+.+..+. +...+..++..+-...+.++...+..+. + ..
T Consensus 704 A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 704 ALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHH
Confidence 555555433211 1223344445555555555666655544332 2222335555555666666666654432 2 22
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc
Q 041942 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303 (498)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 303 (498)
+...+.+++...-...+.++...|..+.+...+..+.+ .++..+-...+.++...+..+ +...+...+. .++
T Consensus 780 L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~~-a~~~L~~~L~----D~~ 851 (897)
T PRK13800 780 VRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAADV-AVPALVEALT----DPH 851 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccccc-hHHHHHHHhc----CCC
Confidence 33334456767777777777777766554444444432 345555555666666666533 3333323432 234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHh-cCCCCChhH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFL-GMRDRDVST 337 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~~ 337 (498)
..+-...+.++.+.+....+...+. .+.+.|...
T Consensus 852 ~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 852 LDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 4444455555555422233444443 333444443
No 364
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=73.12 E-value=95 Score=30.23 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=73.6
Q ss_pred HHHHHHHhcCCCCChhHH-HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hhcCCHHHHHHHHHHhH
Q 041942 321 ERAIEVFLGMRDRDVSTW-STLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC--SHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 321 ~~A~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 397 (498)
+.....+..+..++..++ +.++..+.+.|.+.+|...+..+... .+|+...|..+++.- ...-+...++.+++.+.
T Consensus 445 ~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 445 DLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 334455566666766554 56888888999999999999999884 245677777777432 12223888999999999
Q ss_pred HhcCCCCC--hhHHH---hhCChHHHHHHHHHHHc
Q 041942 398 DEYNIEPN--IRHYG---VHGDVELGRLANKRLLN 427 (498)
Q Consensus 398 ~~~~~~p~--~~~y~---~~g~~~~a~~~~~~~~~ 427 (498)
..+|-.|+ ...|. ..|..+.+-.++.++..
T Consensus 524 ~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 524 REFGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHhCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 98996666 22222 67777777777776663
No 365
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.35 E-value=71 Score=30.11 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------CCCCCHH
Q 041942 307 GNALIDMYAKCGSIERAIEVFLGMRD------RDVSTWSTLIGGLAFHGFAEESIAMFREMQRL---------KVRPTEI 371 (498)
Q Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---------~~~p~~~ 371 (498)
+.-+.+.|..+|+++.|.+.|.+..+ .-+..|-.+|..-...|+|.....+..+.... -+.+-..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 34566777788888888888877553 13345666666666677777776666666543 1333345
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
++..+...+.+ ++..|.+.|-...
T Consensus 233 C~agLa~L~lk--kyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 233 CAAGLANLLLK--KYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhCC
Confidence 55555554444 6666666654443
No 366
>PRK10941 hypothetical protein; Provisional
Probab=72.25 E-value=13 Score=33.07 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=52.0
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
.|.+.++++.|.++.+.++.+.|+++.-+..-+-.|.+.|.+..|..-++...+.-.
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 566889999999999999999999999999999999999999999998888876544
No 367
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.24 E-value=51 Score=29.31 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=44.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh---
Q 041942 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK--- 316 (498)
Q Consensus 240 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 316 (498)
|++++..++|.+++...-+--+.--+.........|-.|.+.+....+.++-...+...+ .-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHHHH
Confidence 556666666666665443333221122334444455556666666666666544443322 2222235555555443
Q ss_pred --cCCHHHHHHHH
Q 041942 317 --CGSIERAIEVF 327 (498)
Q Consensus 317 --~~~~~~A~~~~ 327 (498)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 57777777776
No 368
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.01 E-value=29 Score=29.59 Aligned_cols=60 Identities=10% Similarity=-0.040 Sum_probs=37.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHH
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 133 (498)
.+..+..+.+.+.+.+|+...+.-.+.. +.|...-..++..+|-.|++++|..-++..-+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3445556666777777777776665542 33455566666777777777777666666554
No 369
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=70.38 E-value=31 Score=25.78 Aligned_cols=28 Identities=7% Similarity=0.323 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999999877
No 370
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.23 E-value=37 Score=33.49 Aligned_cols=123 Identities=15% Similarity=0.079 Sum_probs=83.1
Q ss_pred HHHHHHHHhcCCCCChhHHHHHH---HHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHH
Q 041942 320 IERAIEVFLGMRDRDVSTWSTLI---GGLAFHGFAEESIAMFREMQRLKVRP--TEITFVGVLVACSHAGKVEEGKKYFK 394 (498)
Q Consensus 320 ~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (498)
.+.+-.++-.|..++...|-.|- -.....|+...|...+..... ..| ..+....|.+...+.|-...|-.++.
T Consensus 589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHH
Confidence 34566677777777655554322 223346888999998888766 344 34456667777788888888888887
Q ss_pred HhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 041942 395 LMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444 (498)
Q Consensus 395 ~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (498)
+.....--.|- ..+|....+++.|.+.|+.+++++|++++.-+.|...-+
T Consensus 667 q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 667 QALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 77662212221 344457778999999999999999999888777765543
No 371
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.20 E-value=53 Score=26.06 Aligned_cols=79 Identities=11% Similarity=0.156 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC---------CChhHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHH
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRD---------RDVSTWSTLIGGLAFHGF-AEESIAMFREMQRLKVRPTEITFVG 375 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~ 375 (498)
..++++.-....+++...+.+++.+.. .+..+|++++.+.....- ---+..+|.-|.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 346677666777777777777766642 356789999999876665 4567788888888889999999999
Q ss_pred HHHHHhhcC
Q 041942 376 VLVACSHAG 384 (498)
Q Consensus 376 l~~~~~~~g 384 (498)
++.++.+.-
T Consensus 121 li~~~l~g~ 129 (145)
T PF13762_consen 121 LIKAALRGY 129 (145)
T ss_pred HHHHHHcCC
Confidence 999988753
No 372
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.13 E-value=61 Score=26.77 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC----CHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHH
Q 041942 351 AEESIAMFREMQRLKVRPT-EITFVGVLVACSHAG----KVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRL 425 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~ 425 (498)
+++|+.-|++.+. +.|+ ..++..+..++...+ +..+|.++ +++|...|+++
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~----------------------F~kA~~~FqkA 106 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEY----------------------FEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHH----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHH----------------------HHHHHHHHHHH
Confidence 3556666666666 7787 467777777776544 22333333 45566688888
Q ss_pred HccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 426 LNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
.+.+|++......|-.+ .+|-++..++.+++..
T Consensus 107 v~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 107 VDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS-
T ss_pred HhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHhh
Confidence 88888876555444332 3577777777776654
No 373
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=69.92 E-value=61 Score=28.39 Aligned_cols=56 Identities=7% Similarity=0.015 Sum_probs=37.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCchHHHHHHHH
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC-ADLGDLEVGKKVHCT 293 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~~a~~~~~~ 293 (498)
.++..+-+.|+++++...++++...+...+..-.+.+-.+| ...|....+++++..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~ 62 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSS 62 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhh
Confidence 46677788899999999999999887777776666665555 233445556666633
No 374
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.38 E-value=70 Score=28.53 Aligned_cols=57 Identities=9% Similarity=-0.063 Sum_probs=34.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|.+++..++|.+++.+.-+--+.--+.-+.....-|-.|.+.|.+..+.++-.....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 566777777777766654443311112234455555667777777777777777666
No 375
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.28 E-value=40 Score=32.39 Aligned_cols=131 Identities=10% Similarity=-0.014 Sum_probs=81.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCCh
Q 041942 342 IGGLAFHGFAEESIAMFREMQR-LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDV 415 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~ 415 (498)
|.--...|+...|-+-+....+ ..-.|+.... ....+...|+++.+.+.+.......|-... .....+.|+.
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 3344456787777665554444 2223443333 334457789999999988776553232222 1122277888
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeEEEec
Q 041942 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476 (498)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 476 (498)
++|....+-++.-.-.++++...-+-.--..|-++++.-.+++....+.+ ...-|+-..
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~--~~~g~v~~~ 432 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE--TQSGWVNFL 432 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh--hcccceeee
Confidence 99998888888766667776665555555668889999999998775554 444444444
No 376
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.90 E-value=1.7e+02 Score=30.91 Aligned_cols=23 Identities=4% Similarity=0.016 Sum_probs=11.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHH
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|+......|++++|...+.++..
T Consensus 624 LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 624 LAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444445555555555554444
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.74 E-value=9.6 Score=26.31 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=31.7
Q ss_pred hCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHHHH
Q 041942 412 HGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVEKV 455 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~ 455 (498)
..+-++|+..++++++..++.+ .++..|+.+|...|++.+++..
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777776555544 4677788899999999998876
No 378
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.01 E-value=19 Score=32.77 Aligned_cols=58 Identities=9% Similarity=0.003 Sum_probs=29.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKV-RP--TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
=..-|.+.+++..|...|.+-++... .| +...|+.-..+-.-.|++..|+.-....++
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777777766655332 12 233444434444444555555554444433
No 379
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=66.31 E-value=1.9e+02 Score=31.45 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=15.9
Q ss_pred HHHHHHHHhcC--CHHHHHHHHhcCCCC
Q 041942 308 NALIDMYAKCG--SIERAIEVFLGMRDR 333 (498)
Q Consensus 308 ~~l~~~~~~~~--~~~~A~~~~~~~~~~ 333 (498)
..++.+|.+.+ ++++|+..+.++.+.
T Consensus 816 ~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 816 QPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 45666666666 666666666665544
No 380
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.21 E-value=17 Score=26.25 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 435 DYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
+...++......|++++|+..+++..+
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455677888888999999999998864
No 381
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.77 E-value=27 Score=22.07 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 377 (498)
.+.-++.+.|++++|.+..+.+.+ +.|+......|-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 345567788888888888888887 677755544443
No 382
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.92 E-value=94 Score=26.99 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=21.7
Q ss_pred CCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 041942 52 PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM 96 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 96 (498)
.+++++|.+.+-.-.-+ ...-..++.++...|+.+.|+.+++.+
T Consensus 91 ~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred hHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhc
Confidence 45666666655332110 111223555555566666666666554
No 383
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.78 E-value=55 Score=24.28 Aligned_cols=77 Identities=13% Similarity=-0.008 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 041942 19 RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98 (498)
Q Consensus 19 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 98 (498)
+.|..+...+...+-.-.+++...++. +.. .|+|++|+..=.....||...|-.|-. .+.|-.+++..-+.++..
T Consensus 23 ~EA~tIa~wL~~~~~~~E~v~lIr~~s--LmN-rG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 23 QEANTIADWLEQEGEMEEVVALIRLSS--LMN-RGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHH--HHH-TT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH--HHh-hHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 556666666666655444444444443 333 566666644444444666666654433 345666666666665555
Q ss_pred CC
Q 041942 99 CS 100 (498)
Q Consensus 99 ~~ 100 (498)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 44
No 384
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.73 E-value=62 Score=29.46 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=52.3
Q ss_pred CChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 041942 216 GEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295 (498)
Q Consensus 216 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 295 (498)
--+.+|+++|++..+....+|+. -+.+...|... +.+.++....-...-..+..+..+.|+..+|.+.+++++
T Consensus 230 ~Ti~~AE~l~k~ALka~e~~yr~-sqq~qh~~~~~------da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAGETIYRQ-SQQCQHQSPQH------EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLM 302 (556)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhh-HHHHhhhccch------hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34567777777766544444441 11122222221 223333222222222344455567788888888887777
Q ss_pred HhhcCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 041942 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (498)
+......-..+...|+.++....-+.++..++
T Consensus 303 ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 303 KEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66654333333445666666555554444443
No 385
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.60 E-value=26 Score=21.55 Aligned_cols=33 Identities=6% Similarity=0.061 Sum_probs=17.9
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 041942 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113 (498)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 113 (498)
.+.|-..++..+++.|.+.|+.-+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555555555666655555555555554443
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.43 E-value=17 Score=23.80 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+...++++.+.. .+-|..--..++.++...|++++|.++++.+..
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444443 233444445566777777777777777766655
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.32 E-value=42 Score=25.72 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHH
Q 041942 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133 (498)
Q Consensus 88 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 133 (498)
+..+-++.+...++.|++......+++|-+.+|+..|.++|+-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555666666777777777777777777777777777776654
No 388
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=64.08 E-value=12 Score=33.49 Aligned_cols=52 Identities=17% Similarity=0.333 Sum_probs=31.0
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCCC----hhHHH----hhCChHHHHHHHHHHHccCCCCCch
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEPN----IRHYG----VHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~----~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
.+.|+.++|..+|+.... +.|+ ...|+ ...++-+|.+.|-+++.++|.+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 356777777777777665 4444 11111 3455666777777777777766443
No 389
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.89 E-value=94 Score=26.72 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHH
Q 041942 348 HGFAEESIAMFREMQR----LKVRPTE--ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLA 421 (498)
Q Consensus 348 ~~~~~~A~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~ 421 (498)
...+++|++.|.-+.- .+.+|.. ..+..+...|...|+.+.-...++.+ ...
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~A----------------------l~~ 147 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKA----------------------LEF 147 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH----------------------HHH
Confidence 3455556555544321 2234442 34444556666677744444444433 335
Q ss_pred HHHHHccCCC------CCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 422 NKRLLNMRKD------ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 422 ~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
|+++.+.... +..+...++....+.|++++|.+.|.++...+-
T Consensus 148 y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 148 YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 5555532211 234566778888888999999999999876554
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.82 E-value=40 Score=23.90 Aligned_cols=66 Identities=8% Similarity=0.070 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHH
Q 041942 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAV 90 (498)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 90 (498)
+..++..+.+.|+ -+......+-. .-.. .|+.+.|.+++..++ ..+..|...+.++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~a-a~~~-~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEA-ATEN-HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHH-hccc-cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4567777777773 33334444433 3334 688888888888888 77777888888887777655543
No 391
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.66 E-value=3.2e+02 Score=32.68 Aligned_cols=60 Identities=5% Similarity=-0.002 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+|-...+.....|+++.|...+-...+.+ . +..+.-.+.-.-..|+...|..++++...
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344445555545555555555544444432 1 12233333344445555555555555543
No 392
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.52 E-value=1.1e+02 Score=27.28 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=43.6
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 041942 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF-VGVLVAC 380 (498)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~ 380 (498)
-++.....+...|.+.|++.+|+..|-.-..++...+..++......|. +.+...| ...+--|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~----------------~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGY----------------PSEADLFIARAVLQY 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTS----------------S--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcC----------------CcchhHHHHHHHHHH
Confidence 3566667888889999999888887755433333333222222222222 2222222 2233445
Q ss_pred hhcCCHHHHHHHHHHhHH
Q 041942 381 SHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~ 398 (498)
.-.|+...|...++...+
T Consensus 152 L~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHTTBHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 666888888888877766
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.34 E-value=1.8e+02 Score=29.81 Aligned_cols=177 Identities=11% Similarity=-0.015 Sum_probs=92.9
Q ss_pred hhHHHHHHHHH-hcCCcC--hHHHHHHHHhhhhccCCChHHHHHhcccCC----CCChh-----hHHHHHHHHhccCChH
Q 041942 20 TLKQIQALVTI-NGFNSD--SSALRELIYSGSVVIPGAINYAHKMFVKIT----EPDTF-----MYNTIIRGSAQSQNPL 87 (498)
Q Consensus 20 ~a~~~~~~~~~-~~~~~~--~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~----~~~~~-----~~~~ll~~~~~~g~~~ 87 (498)
.|.+++..+.+ ..+.|. ..+.-.+....+.. ..+++.|+..+++.. +++.. +...++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~e-T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEE-TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 44555666653 333332 33444555533445 788999999888774 33222 2234455566555544
Q ss_pred HHHHHHHHHHhC----CCCCCHhhHHHH-HHHhhcccchhhHHHHHHHHHHhC---CCCChHHHHHHHHHHH--hcCChh
Q 041942 88 DAVFLYTQMEKC----SIKPNKFTFSFV-LKACTRLLYRNMGFCVHGKIVKYG---FEFNRFVRNSLIYFHA--NCGDLN 157 (498)
Q Consensus 88 ~A~~~~~~m~~~----~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~ 157 (498)
|...+++..+. +..+-...+..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888776542 122233334333 222223378888888888877632 2333444444444433 334444
Q ss_pred HHHHhhccC-------------CCCCcchHHHHHHH--HHhcCChHHHHHHHhcCC
Q 041942 158 TASVLFDGD-------------AKMDVVAWSSLTAG--YARRGELSMARSLFDEMP 198 (498)
Q Consensus 158 ~A~~~~~~~-------------~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~ 198 (498)
++.+.++.. ..|...+|..++.. +...|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444322 11233455555554 346677667666665554
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.61 E-value=10 Score=29.26 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=24.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 041942 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115 (498)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 115 (498)
..|.-.+|..+|++|+++|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 446667889999999999988864 66776543
No 395
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=61.55 E-value=1.3e+02 Score=27.29 Aligned_cols=142 Identities=9% Similarity=0.009 Sum_probs=71.4
Q ss_pred CHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc-----C--CH
Q 041942 319 SIERAIEVFLGMRDR-DVSTWSTLIGGLAF----HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA-----G--KV 386 (498)
Q Consensus 319 ~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g--~~ 386 (498)
+..+|...|....+. +......|...|.. ..+..+|..+|+++.+.|..+...+...+...+... - +.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 345555555544332 22333334444443 236666677777666666443212222222222221 1 22
Q ss_pred HHHHHHHHHhHHhcCCCCC-----hhHHH----hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC----------
Q 041942 387 EEGKKYFKLMRDEYNIEPN-----IRHYG----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG---------- 447 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~-----~~~y~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 447 (498)
..|...+.++.. .+ .|+ ...|. ...++++|...|.++-+... ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~-~~-~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~ 246 (292)
T COG0790 172 KKALYLYRKAAE-LG-NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLT 246 (292)
T ss_pred HhHHHHHHHHHH-hc-CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcc
Confidence 356666666555 22 222 11111 23367777777777776555 44444555 555554
Q ss_pred -----CchHHHHHHHHhhhCCCc
Q 041942 448 -----EWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 448 -----~~~~A~~~~~~m~~~~~~ 465 (498)
+...|...+......|..
T Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 247 AAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cccCCCHHHHHHHHHHHHHcCCh
Confidence 667778888877777664
No 396
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=61.45 E-value=59 Score=25.86 Aligned_cols=65 Identities=6% Similarity=-0.084 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCh
Q 041942 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156 (498)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 156 (498)
++.+.+.+.|++++..- ..++..+...++.-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 45566677887776543 355677777777799999999999988777776666667777777653
No 397
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.36 E-value=2e+02 Score=29.57 Aligned_cols=350 Identities=13% Similarity=0.128 Sum_probs=143.2
Q ss_pred hHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCC-------hHHHHHHHHHHHhCCCCCCHh
Q 041942 37 SSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQN-------PLDAVFLYTQMEKCSIKPNKF 106 (498)
Q Consensus 37 ~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~ 106 (498)
..+|. +|- .+.+ +|++++|.++..... ......+-..+..+....+ -+....-|+.........|+.
T Consensus 112 ~p~Wa-~Iy-y~LR-~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 112 DPIWA-LIY-YCLR-CGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EEHHH-HHH-HHHT-TT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CccHH-HHH-HHHh-cCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 34444 444 6788 999999999993333 4555677788888876532 235566666665543322432
Q ss_pred ---hHHHHHHHhhc-ccch-hhHHHHHHHH------HHhCCC-----CChHHHHHHHHHHHhcCChhHHHHhhccCCCCC
Q 041942 107 ---TFSFVLKACTR-LLYR-NMGFCVHGKI------VKYGFE-----FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170 (498)
Q Consensus 107 ---~~~~li~~~~~-~~~~-~~a~~~~~~~------~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (498)
.|.++ ..|-. .... +-+..+-+.+ .+.... .+..++..|=+...+-|. ..|.. ..+
T Consensus 189 K~AvY~il-g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~--~~~ 260 (613)
T PF04097_consen 189 KRAVYKIL-GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA--GSN 260 (613)
T ss_dssp HHHHHHHH-HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT-----
T ss_pred HHHHHHHH-hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc--chh
Confidence 23333 11111 1111 1111111111 111110 112233222222111111 22222 112
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcC--CCCCcchHHHHHHHHHhcCChHHHH-HHHhhCC-CCChhhHHHHHHHHHhC
Q 041942 171 VVAWSSLTAGYARRGELSMARSLFDEM--PVRDLVSWNVMITGYAKQGEMEKAN-ELFNEVP-KRDVVSWNAMISGYVLC 246 (498)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~-~~~~~~~~~l~~~~~~~ 246 (498)
+. .....+.-.|+++.|++++-+. ...+.+.+...+..|.-.+-.+... .++..-. .+...-+..||..|++.
T Consensus 261 p~---~Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 261 PL---LYFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp ------HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHT
T ss_pred HH---HHHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHH
Confidence 22 2345566788999999988872 2444444444443332222111111 1111111 11224567788888764
Q ss_pred ---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCch-----------HHHHHHHHHHHhhcCCcchh----hH
Q 041942 247 ---GMNKQALEMFEEMRSVGERPDDVTMLSLLTAC-ADLGDLE-----------VGKKVHCTLLDMTSGVAKVL----HG 307 (498)
Q Consensus 247 ---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~-----------~a~~~~~~~~~~~~~~~~~~----~~ 307 (498)
.++.+|.++|--+....-+.....+...+.-+ ...++++ ...-++++...--+...+.. +.
T Consensus 338 F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~ 417 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREII 417 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHH
Confidence 56778888887666443222222333222221 1111110 01111111111111111111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCh--hHHHHHHHHH-HhCCC-----------HHHHHHHHHHHHHCC-----CCC
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRDRDV--STWSTLIGGL-AFHGF-----------AEESIAMFREMQRLK-----VRP 368 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~-~~~~~-----------~~~A~~~~~~m~~~~-----~~p 368 (498)
.....-+...|++++|..+|.-..+.+. ...|.++.-. ..... ...|..+.+.....+ +.+
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 2233445678999999999988876543 3444444332 22222 334555554443321 222
Q ss_pred -CHHHHHHHHH-----HHhhcCCHHHHHHHHHHhHHhcCCCC
Q 041942 369 -TEITFVGVLV-----ACSHAGKVEEGKKYFKLMRDEYNIEP 404 (498)
Q Consensus 369 -~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~p 404 (498)
+..|+..|+. .+...|+++.|.+.++++ ++-|
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L----~liP 535 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL----DLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT----T-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC
Confidence 2445665553 346789999998887765 5666
No 398
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.28 E-value=38 Score=25.95 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 354 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
..+-+..+..-++.|++......+++|.+.+++..|.++|+-++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4444566666678899999999999999999999999999888763
No 399
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.26 E-value=1.2e+02 Score=27.11 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHh
Q 041942 437 VLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
..++.++.+.|++.+|+.++..+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 45677788888888888765544
No 400
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.41 E-value=2e+02 Score=29.17 Aligned_cols=171 Identities=14% Similarity=0.088 Sum_probs=76.4
Q ss_pred hHHHHHHHhhCCCC-ChhhHHHHHHH-----HHhCCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccC--
Q 041942 218 MEKANELFNEVPKR-DVVSWNAMISG-----YVLCGMNKQALEMFEEMRS-------VGERPDDVTMLSLLTACADLG-- 282 (498)
Q Consensus 218 ~~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~~-- 282 (498)
...|.++++...+. +......+... +....+++.|+..|+...+ .|.+ .....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCC
Confidence 34566666555542 33322222222 2234566777777766655 4422 23334444444432
Q ss_pred ---CchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhc---CCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----CCCH
Q 041942 283 ---DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC---GSIERAIEVFLGMRDR-DVSTWSTLIGGLAF----HGFA 351 (498)
Q Consensus 283 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~ 351 (498)
+.+.|..++ ......+. |+.... +...+... .+...|..+|....+. ....+-.+..+|.. ..+.
T Consensus 305 ~~~d~~~A~~~~-~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLY-TKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHH-HHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 445566666 33333332 333221 23333222 3456677777665532 22222222222221 2356
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 352 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
..|..++++.-+.| .|...--...+..+.. +.++.+.-.+..+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 67777777777666 3332222223333333 44444444443333
No 401
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.50 E-value=39 Score=20.75 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041942 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276 (498)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 276 (498)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4466778888888888888888888887776664
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.02 E-value=2.5e+02 Score=29.99 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=30.5
Q ss_pred CCChHHHHHhcccCCCCChhh-----HHHHHH-H--HhccCChHHHHHHHHHHHh
Q 041942 52 PGAINYAHKMFVKITEPDTFM-----YNTIIR-G--SAQSQNPLDAVFLYTQMEK 98 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~-----~~~ll~-~--~~~~g~~~~A~~~~~~m~~ 98 (498)
..++++|..+-+....|++.. +..... + +..+|++++|++.|.++..
T Consensus 320 ~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 320 EKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 566888887777666565542 222222 2 4567888888888888754
No 403
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.79 E-value=1.3e+02 Score=31.73 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=108.5
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHH
Q 041942 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324 (498)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (498)
-..++++.+.+.+...--| .++|.-+.+.|-.+-|..+.+ |..+ -......+|+++.|+
T Consensus 605 i~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVk----------D~~t---RF~LaLe~gnle~al 663 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVK----------DERT---RFELALECGNLEVAL 663 (1202)
T ss_pred HhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeec----------Ccch---heeeehhcCCHHHHH
Confidence 3456676665554332112 234444566777777766551 1111 222345679999998
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC
Q 041942 325 EVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404 (498)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 404 (498)
+.-..+. +..+|..|+.....+|+.+-|+..|++... |..|--.|.-.|+.++-.++.+.+..+.....
T Consensus 664 e~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~D~~~ 732 (1202)
T KOG0292|consen 664 EAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRNDATG 732 (1202)
T ss_pred HHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHH
Confidence 8877765 556899999999999999999999888654 23333455667887777666655543111111
Q ss_pred ChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 405 NIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 405 ~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
.-..-.-.|+.++-.++++..-. -+.+|.. -..+|.-++|.++.++..+++..
T Consensus 733 ~~qnalYl~dv~ervkIl~n~g~----~~laylt----a~~~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 733 QFQNALYLGDVKERVKILENGGQ----LPLAYLT----AAAHGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred HHHHHHHhccHHHHHHHHHhcCc----ccHHHHH----HhhcCcHHHHHHHHHhhccccCC
Confidence 11111246777777777776431 1222222 12357888999999988775543
No 404
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.58 E-value=1.9e+02 Score=28.30 Aligned_cols=37 Identities=5% Similarity=-0.064 Sum_probs=20.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhccc
Q 041942 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL 119 (498)
Q Consensus 83 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 119 (498)
++.++..++++..+...|.......++.....+.+.|
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~ 66 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTG 66 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcc
Confidence 4556666666666665554444444555555555544
No 405
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.46 E-value=1.4e+02 Score=29.29 Aligned_cols=110 Identities=11% Similarity=0.139 Sum_probs=64.5
Q ss_pred HHHHHHhhch-------hhh-HHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHH
Q 041942 9 SRLWKKCTNL-------RTL-KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIR 78 (498)
Q Consensus 9 ~~~l~~~~~~-------~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~ 78 (498)
..++.+|... ... ..+-..+...|+..+......+.. .+ .|+...|+.++++.. .....++..+
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S--~Gd~RdAL~lLeq~i~~~~~~it~~~V-- 239 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAK--KG--DGSVRDMLSFMEQAIVFTDSKLTGVKI-- 239 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc--CChHHHHHHHHHHHHHhCCCCcCHHHH--
Confidence 4567777532 122 223334445677777777766664 33 588999998887642 1111122211
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHH
Q 041942 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFV 142 (498)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 142 (498)
.++. |+ ++...+..++.++...+....+..++..+.+.|..|...+
T Consensus 240 ---------------~~~l--g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 240 ---------------RKMI--GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred ---------------HHHh--CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 1221 32 3566666677766555556788999999999887665443
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.35 E-value=22 Score=31.93 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 377 (498)
.-|+..|....+.|++++|+.++++..+.|+.--..+|...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 356789999999999999999999999999776666665444
No 407
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=57.91 E-value=61 Score=24.28 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=55.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHH
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLA 421 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~ 421 (498)
...+.+.|+.-+|+++.++++...- -+...+ ++ ...+|. +|...-. .--+||.. .--+-.+...
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~-~~~~~~--~l--h~~QG~------if~~lA~-~ten~d~k----~~yLl~sve~ 66 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHG-EDESSW--LL--HRLQGT------IFYKLAK-KTENPDVK----FRYLLGSVEC 66 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHcc-CCCchH--HH--HHHHhH------HHHHHHH-hccCchHH----HHHHHHhHHH
Confidence 3457788999999999999887421 122222 11 111121 1222222 12345522 1224456677
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHH
Q 041942 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
+.+...+.|+.......+++-+.....|+++..--++
T Consensus 67 ~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 67 FSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7888888888766666666665555556665554444
No 408
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=57.84 E-value=1.8e+02 Score=27.99 Aligned_cols=236 Identities=11% Similarity=-0.013 Sum_probs=116.7
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCh
Q 041942 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156 (498)
Q Consensus 77 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 156 (498)
|.++...| ..+++.+...... .++...+.....++... +-..+...+-.... .++..+.....+++...+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~--d~~~ev~~~aa~al~~~-~~~~~~~~L~~~L~---d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAE--ADEPGRVACAALALLAQ-EDALDLRSVLAVLQ---AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhh--CCChhHHHHHHHHHhcc-CChHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCch
Confidence 55666666 4566666666543 23334444433333322 22222222222222 34566777777777777776
Q ss_pred hHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhH
Q 041942 157 NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSW 236 (498)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 236 (498)
.-...+.......++......+.++...+. +-...+..-+..++..+-..-+.++...+..+....+..-....|..+-
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR 195 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVR 195 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHH
Confidence 666555555555555555555555554432 1112222222355555556666666666665444444433445666666
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (498)
..-+.+....|. ..|...+...... ++..+...+.......|. +++...+...+.+.. +-...+.++.+
T Consensus 196 ~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d~~------vr~~a~~AlG~ 264 (410)
T TIGR02270 196 FAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVAGG-PDAQAWLRELLQAAA------TRREALRAVGL 264 (410)
T ss_pred HHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhCCc-hhHHHHHHHHhcChh------hHHHHHHHHHH
Confidence 666667777776 5666555553321 222222222222222222 244444433433221 33455566666
Q ss_pred cCCHHHHHHHHhcCCC
Q 041942 317 CGSIERAIEVFLGMRD 332 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~ 332 (498)
.|+...+.-+.+.|.+
T Consensus 265 lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 265 VGDVEAAPWCLEAMRE 280 (410)
T ss_pred cCCcchHHHHHHHhcC
Confidence 6666655555555543
No 409
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=57.46 E-value=59 Score=30.95 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMR 260 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 260 (498)
+.+|..+.-+|.-.+++.+|.++|....
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.93 E-value=1.8e+02 Score=27.62 Aligned_cols=62 Identities=6% Similarity=-0.110 Sum_probs=36.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCCHhhHHHHHHHhhcccchhhHHHHHHHHHH
Q 041942 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCS--IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133 (498)
Q Consensus 72 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 133 (498)
.+.-+...|...|+++.|++.|.+.+..- .+.....|..+|..-.-.|+|..+.....+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45556666777777777777777654421 122344455555555566666666655555544
No 411
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.73 E-value=1.5e+02 Score=26.72 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH----hcCCCCC
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD----EYNIEPN 405 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~ 405 (498)
+++.....|..+|.+.+|.++-++....+ +.+...+-.|+..+...|+--.+.+.++++.+ ..|+..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 44556678899999999999999998843 34677788888999999997777777766644 2455544
No 412
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=56.38 E-value=1.4e+02 Score=26.17 Aligned_cols=51 Identities=14% Similarity=0.022 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHc-----cCCCCCc----hHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 414 DVELGRLANKRLLN-----MRKDESG----DYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 414 ~~~~a~~~~~~~~~-----~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
-.++|...|+++.+ +.|.+|. +.+.=+-.|--.|+.++|.++.++..+..+
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 45778888888773 5666764 233333344557999999999888766544
No 413
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.02 E-value=2.8e+02 Score=29.64 Aligned_cols=144 Identities=8% Similarity=-0.024 Sum_probs=73.1
Q ss_pred CCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCC--CCC-CHhhHH
Q 041942 33 FNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS--IKP-NKFTFS 109 (498)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~p-~~~~~~ 109 (498)
..-++.....+++ .=.. .-.+++...++... .-|..|+..|...|..++|+++|.+..+.. ..+ -..-+-
T Consensus 474 l~~n~~~v~~llr-len~-~c~vee~e~~L~k~-----~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e 546 (877)
T KOG2063|consen 474 LETNPGLVGPLLR-LENN-HCDVEEIETVLKKS-----KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLE 546 (877)
T ss_pred HhcCchhhhhhhh-ccCC-CcchHHHHHHHHhc-----ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHH
Confidence 3444455555554 2221 22355555555442 347778888888888888888888876521 011 111233
Q ss_pred HHHHHhhcccch--hhHHHHHHHHHHhCCCCChHHH------------HHHHHHHHhcCChhHHHHhhccCCC----CCc
Q 041942 110 FVLKACTRLLYR--NMGFCVHGKIVKYGFEFNRFVR------------NSLIYFHANCGDLNTASVLFDGDAK----MDV 171 (498)
Q Consensus 110 ~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~----~~~ 171 (498)
..++.+...+.. +..++.-.+.......--..++ ..-+-.|......+-+...++.+.. .+.
T Consensus 547 ~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~ 626 (877)
T KOG2063|consen 547 KIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTST 626 (877)
T ss_pred HHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccch
Confidence 344544444443 5555555555443211110011 1123345666677777777776543 344
Q ss_pred chHHHHHHHHHh
Q 041942 172 VAWSSLTAGYAR 183 (498)
Q Consensus 172 ~~~~~l~~~~~~ 183 (498)
.-.+.++..|++
T Consensus 627 ~lht~ll~ly~e 638 (877)
T KOG2063|consen 627 LLHTVLLKLYLE 638 (877)
T ss_pred HHHHHHHHHHHH
Confidence 445556665553
No 414
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.78 E-value=1.6e+02 Score=30.47 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=18.3
Q ss_pred hhCChHHHHHHHHHHHccCCCCCc
Q 041942 411 VHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
...++.+|.++-+.+.++.|+.-.
T Consensus 378 LAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 378 LANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred hccCHHHHHHHHHHHhccCCceeh
Confidence 456788888888888888887543
No 415
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.54 E-value=94 Score=23.97 Aligned_cols=42 Identities=5% Similarity=0.166 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 041942 353 ESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFK 394 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (498)
.+.++|..|...|+--. ..-|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555444332 3334444444445555555555544
No 416
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.27 E-value=19 Score=23.66 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=22.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.....++.+|...|++++|.++++++.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466789999999999999999998854
No 417
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.05 E-value=78 Score=26.24 Aligned_cols=48 Identities=10% Similarity=0.266 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHCCCCCC--HHHHHH-----HHHHHhhcCCHHHHHHHHHHhHH
Q 041942 351 AEESIAMFREMQRLKVRPT--EITFVG-----VLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~--~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+.|+.+|+...+.--.|. ...... .+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5778888888877432331 222222 23568888999999999988765
No 418
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.85 E-value=2.3e+02 Score=28.29 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=50.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCCchHHHHHHHHHH--HhhcCCcchhhHHHHHHHHHh
Q 041942 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA-DLGDLEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAK 316 (498)
Q Consensus 240 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~ 316 (498)
|..+.+.|-+..|+++-+.+.+....-|+.....+|..|+ ++.++.-.+++++..- .....-|+...-.+|...|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 5667778889999988888887765557777777887774 5666666666663332 222334554444455555555
Q ss_pred cCC
Q 041942 317 CGS 319 (498)
Q Consensus 317 ~~~ 319 (498)
...
T Consensus 429 ~~~ 431 (665)
T KOG2422|consen 429 KNE 431 (665)
T ss_pred cCC
Confidence 444
No 419
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.27 E-value=48 Score=27.87 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 354 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..+..++..+ ..|+...|..++.++...|+.++|.++.+++..
T Consensus 130 ~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 130 YIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444454 579999999999999999999999999988877
No 420
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.04 E-value=1.6e+02 Score=27.98 Aligned_cols=55 Identities=5% Similarity=-0.037 Sum_probs=39.7
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHh--hHHHHHHHhh--cccchhhHHHHHHHHHHh
Q 041942 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKF--TFSFVLKACT--RLLYRNMGFCVHGKIVKY 134 (498)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 134 (498)
.+...+++..|.++|+.+.++ ++++.. .|..+..+|. ...++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788999999999999887 666555 4555555543 456788888888887764
No 421
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.88 E-value=2.3e+02 Score=27.92 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHhhccCCC--CCcchHHHHHHHHHhcCChHHHHHHHhcC
Q 041942 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAK--MDVVAWSSLTAGYARRGELSMARSLFDEM 197 (498)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 197 (498)
.|.....+++..+.....+.-++.+..++.. .+...+..++.+|... ..+.-..+++++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ 124 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERL 124 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHH
Confidence 3444555556666555555555555555443 3444555555655555 334444444433
No 422
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.59 E-value=1.6e+02 Score=26.11 Aligned_cols=181 Identities=10% Similarity=0.043 Sum_probs=113.0
Q ss_pred CCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCchHHHHHHHHHHHhhc----CCcchhhHHHHHHHHHhcC
Q 041942 246 CGMNKQALEMFEEMRSVGERPDD---VTMLSLLTACADLGDLEVGKKVHCTLLDMTS----GVAKVLHGNALIDMYAKCG 318 (498)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~ 318 (498)
..++++|+.-|.+..+....-.. ..+..++....+.+++++....|.+++.--. ..-+....+.+++....+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34678888888887754323233 3445567778899999998888855543211 1123445567777666666
Q ss_pred CHHHHHHHHhcCCC-----CCh----hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC----CCC-------HHHHHHHHH
Q 041942 319 SIERAIEVFLGMRD-----RDV----STWSTLIGGLAFHGFAEESIAMFREMQRLKV----RPT-------EITFVGVLV 378 (498)
Q Consensus 319 ~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~----~p~-------~~~~~~l~~ 378 (498)
+.+--..+++.-.+ +|. .|-.-|...|...+.+.+..++++++...-. .-| ...|..-++
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 66555555443221 222 2445677888888999999999988865311 111 236777778
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCCh-----------hHHHhhCChHHHHHHHHHHH
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNI-----------RHYGVHGDVELGRLANKRLL 426 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----------~~y~~~g~~~~a~~~~~~~~ 426 (498)
.|....+......++++......--|.. .+..+.|.+++|...|=++.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 8888888888888888766533334442 22237788998887665555
No 423
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.73 E-value=29 Score=29.80 Aligned_cols=51 Identities=14% Similarity=0.336 Sum_probs=27.1
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCc
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
.+.|+.+.+.+++.+... ..|. ...-.+.|+++.|.+.|++.++++|+|..
T Consensus 6 ~~~~D~~aaaely~qal~---lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 6 AESGDAEAAAELYNQALE---LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cccCChHHHHHHHHHHhh---cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 445566666666665544 3443 11112555666666666666666666543
No 424
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.57 E-value=95 Score=23.12 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=43.2
Q ss_pred CchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 041942 283 DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 362 (498)
..++|..|. +.+...+.....++ -.-+..+...|++++|...=.....||...|-+|-. .+.|-.+++...+.++-
T Consensus 21 cH~EA~tIa-~wL~~~~~~~E~v~-lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIA-DWLEQEGEMEEVVA-LIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHH-HHHHHTTTTHHHHH-HHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHHHhCCcHHHHHH-HHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 456666666 44444433222222 223444566777777744444445567766665544 35677777777777666
Q ss_pred HCCCCCCHHHH
Q 041942 363 RLKVRPTEITF 373 (498)
Q Consensus 363 ~~~~~p~~~~~ 373 (498)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 554 3433333
No 425
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.23 E-value=2.2e+02 Score=27.31 Aligned_cols=114 Identities=12% Similarity=0.039 Sum_probs=48.2
Q ss_pred HHhcCChhHHHHhhccCCCCCcch--HHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHH
Q 041942 150 HANCGDLNTASVLFDGDAKMDVVA--WSSLTAGYARRGELSMARSLFDEMPV---RDLVSWNVMITGYAKQGEMEKANEL 224 (498)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 224 (498)
.+..|+.+-+..+++....++... -.+.+...+..|+.+-+.-+++.-.. .|....+. +...+..|+.+-+.-+
T Consensus 109 A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~L 187 (413)
T PHA02875 109 ATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTP-LIIAMAKGDIAICKML 187 (413)
T ss_pred HHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH
Confidence 344555555555555443322111 11223334455565555555543331 12222222 2334455666655555
Q ss_pred HhhCCCCChh---hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 041942 225 FNEVPKRDVV---SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268 (498)
Q Consensus 225 ~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 268 (498)
++.-..++.. .....+...+..|+.+ +.+.+.+.|..++.
T Consensus 188 l~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 188 LDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 5544433221 1122333334445543 34445556655553
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.19 E-value=26 Score=31.49 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=23.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhH
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTF 108 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 108 (498)
||.-|....+.||+++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 556777777777777777777777776654444444
No 427
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=51.43 E-value=3.6e+02 Score=29.41 Aligned_cols=247 Identities=11% Similarity=-0.032 Sum_probs=153.8
Q ss_pred CCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCh-hHHHHhhccCCCCCcchHHHHHHH
Q 041942 102 KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL-NTASVLFDGDAKMDVVAWSSLTAG 180 (498)
Q Consensus 102 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~l~~~ 180 (498)
.+|..+-...+..+.+.+..+ +...+..+.+ .++..+-...+.++.+.+.. .....+...+..+|...-...+..
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHH
Confidence 578888888888888877644 4444445553 45666666666666555332 111222233334666666666666
Q ss_pred HHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHH-HHHHHHHH
Q 041942 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ-ALEMFEEM 259 (498)
Q Consensus 181 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m 259 (498)
+...+..+ ...+...+..+|...-...+.++.+.+..+ .+.....+++...-...+.++...+..+. +...+..+
T Consensus 708 L~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~l 783 (897)
T PRK13800 708 LRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRAL 783 (897)
T ss_pred HHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 65543221 234445555777776677777777665543 34445566788877778888887776543 34555555
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHH
Q 041942 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS 339 (498)
Q Consensus 260 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 339 (498)
.. .++...-...+.++...|....+...+...+.. ++..+-...+.++...+..+....+...+.+++...-.
T Consensus 784 l~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d----~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~ 856 (897)
T PRK13800 784 TG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA----SAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRK 856 (897)
T ss_pred hc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC----CChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHH
Confidence 43 456777888888998888766554333244332 34555556777788877755555555666678888888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
..+.++.+.+....+...+..+.+
T Consensus 857 ~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 857 AAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHh
Confidence 888888886445567777777766
No 428
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.75 E-value=9.5 Score=29.44 Aligned_cols=81 Identities=11% Similarity=-0.066 Sum_probs=48.8
Q ss_pred HHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHcc---------CCCCCch---HHHHHHHHHhCCCchHHHHHH
Q 041942 389 GKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNM---------RKDESGD---YVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 389 a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~---------~~~~~~~---~~~l~~~~~~~g~~~~A~~~~ 456 (498)
-..+.+.|.+..+..|....|...+-+....+.+.++.-. +..+..+ |..=-..+...|.-.+|-.+|
T Consensus 39 Laai~~li~e~IP~DP~~~~yrqG~TLG~~~khW~RaKf~~ryRLFFRy~s~skiIv~aWvNDe~tlR~ygsk~DaY~VF 118 (140)
T PF11663_consen 39 LAAISKLIFEVIPADPTRPEYRQGNTLGDEYKHWFRAKFFQRYRLFFRYDSESKIIVYAWVNDEQTLRAYGSKTDAYAVF 118 (140)
T ss_pred HHHHHHHHHhhccCCCCchHhhCCCCCcccccchhhhcccceeeEEEEecCccCEEEEEEeCCCcchhhhccCCcHHHHH
Confidence 3344555555567788888887555555555555555421 1222221 222122455567778899999
Q ss_pred HHhhhCCCccCCc
Q 041942 457 KLMDDSDIKKQPG 469 (498)
Q Consensus 457 ~~m~~~~~~~~~~ 469 (498)
++|.+.|-+|+..
T Consensus 119 ~kML~~G~pPddW 131 (140)
T PF11663_consen 119 RKMLERGNPPDDW 131 (140)
T ss_pred HHHHhCCCCCccH
Confidence 9999999977654
No 429
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.43 E-value=78 Score=27.63 Aligned_cols=105 Identities=12% Similarity=0.044 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCCCCCHHHHH-----------HHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQR------LKVRPTEITFV-----------GVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~------~~~~p~~~~~~-----------~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+...-.+-+.+.|++.+|..-|.+++. ..-+|-..-|. ..-+++...|++-++++.-.++..
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3444455668889999999999998643 12245443332 222455667888888888888766
Q ss_pred hcCCCCC-hhHHH-------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 399 EYNIEPN-IRHYG-------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 399 ~~~~~p~-~~~y~-------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
..|+ +.+|. ..-+..+|...|.++++++|.-..+...=..++
T Consensus 259 ---~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~l 308 (329)
T KOG0545|consen 259 ---HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLL 308 (329)
T ss_pred ---cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 3444 45554 333678888888888888887655544444443
No 430
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=50.39 E-value=2.1e+02 Score=26.53 Aligned_cols=88 Identities=16% Similarity=0.117 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 041942 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ-ALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284 (498)
Q Consensus 206 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 284 (498)
..+.+.+++.++.+.+..+-+.+..-......++..++-...-.+. +..+++.+... ||......++++.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 3445666666666665555555554344445555555554443333 33344444433 7888888888888877766
Q ss_pred hHHHHHHHHHHH
Q 041942 285 EVGKKVHCTLLD 296 (498)
Q Consensus 285 ~~a~~~~~~~~~ 296 (498)
......+...+.
T Consensus 247 ~~~~~~i~~~L~ 258 (340)
T PF12069_consen 247 DLVAILIDALLQ 258 (340)
T ss_pred hHHHHHHHHHhc
Confidence 666654534443
No 431
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.64 E-value=23 Score=20.21 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhCCCchHHHHHHH
Q 041942 435 DYVLLSNIYASRGEWNRVEKVRK 457 (498)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~ 457 (498)
.+..++..+...|++++|+.+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46678889999999999999944
No 432
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.51 E-value=2.1e+02 Score=26.27 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCCC--------ChhHHHH-HHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDR--------DVSTWST-LIGGLAFHGFAEESIAMFREMQRLKVRPTE---- 370 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~---- 370 (498)
...+......|++-|+.+.|.+.+++.-++ |+..+.. +.-.|....-..+-++..+.+.+.|-..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 334445566677777777777766554322 3333322 222233333344555555666666655443
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 371 ITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+|..+- |....++.+|-.+|-....
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 2333332 3344567777776655543
No 433
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.33 E-value=2.5e+02 Score=26.99 Aligned_cols=202 Identities=12% Similarity=0.030 Sum_probs=108.9
Q ss_pred HHHHHHHHhcCCcChHH--HHHHHHhhhhccCCChHHHHHhcccCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHh
Q 041942 23 QIQALVTINGFNSDSSA--LRELIYSGSVVIPGAINYAHKMFVKITEPDTF--MYNTIIRGSAQSQNPLDAVFLYTQMEK 98 (498)
Q Consensus 23 ~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~~ 98 (498)
.+.+.+.+.|..|+... ....+. ..+. .|+.+-+.-+++....|+.. .....+...+..|+.+.+..+++.-..
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~-~A~~-~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~ 93 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIK-LAMK-FRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHH-HHHH-cCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCc
Confidence 34555566777665432 223344 4555 78888887777766544332 112345556678888766555543211
Q ss_pred CCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHH--HHHHHHHHHhcCChhHHHHhhccCCCC---Ccch
Q 041942 99 CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFV--RNSLIYFHANCGDLNTASVLFDGDAKM---DVVA 173 (498)
Q Consensus 99 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 173 (498)
..-..+..-. +.+...+..|+. ++++.+.+.|..|+... -...+...+..|+.+-+..+++..... |..-
T Consensus 94 ~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g 168 (413)
T PHA02875 94 ADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCG 168 (413)
T ss_pred ccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Confidence 0000111112 223334455554 45566667776655321 123455566788888888888765442 2222
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 041942 174 WSSLTAGYARRGELSMARSLFDEMPVRDLV---SWNVMITGYAKQGEMEKANELFNEVPKRD 232 (498)
Q Consensus 174 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 232 (498)
++.+ ...+..|+.+-+.-+++.-..++.. ...+++...+..|+.+-+.-+++.-..++
T Consensus 169 ~TpL-~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n 229 (413)
T PHA02875 169 CTPL-IIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229 (413)
T ss_pred CCHH-HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence 3333 3445567777776666654433322 22345555667788887777776654444
No 434
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.02 E-value=95 Score=22.09 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=18.7
Q ss_pred cCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHH
Q 041942 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190 (498)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 190 (498)
.|+.+.|.+++..+. ..+..|...+.++...|.-+-|
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 345555555555555 4444555555555555544433
No 435
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=48.86 E-value=3.1e+02 Score=27.93 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=31.2
Q ss_pred ChHHHHHHHHhhhhccCCChHHHHHhcccCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 041942 36 DSSALRELIYSGSVVIPGAINYAHKMFVKITEPD-TFMYNTIIRGSAQSQNPLDAVFLYTQMEKC 99 (498)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 99 (498)
....+..|+. .+. .=+.+...++++++.. . ...+..+++++...|-.....-+.+.+...
T Consensus 309 ~~~~f~~lv~-~lR--~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 309 AAAKFLRLVR-LLR--TLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred hHHHHHHHHH-HHH--hCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 4445555554 333 3445555555555543 2 455666666666666655555444444443
No 436
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=48.81 E-value=2.4e+02 Score=26.65 Aligned_cols=139 Identities=13% Similarity=0.089 Sum_probs=75.1
Q ss_pred HhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHH-hc-CChHHHHHHHhhC
Q 041942 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYA-KQ-GEMEKANELFNEV 228 (498)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~A~~~~~~~ 228 (498)
...+|.+.-..+++. -+-.+.+.-.+...+.+.|+.+.|.+++++.. .++........ .. .+......-++--
T Consensus 21 v~~~Dp~~l~~ll~~-~PyHidtLlqls~v~~~~gd~~~A~~lleRAL----f~~e~~~~~~F~~~~~~~~~g~~rL~~~ 95 (360)
T PF04910_consen 21 VQSHDPNALINLLQK-NPYHIDTLLQLSEVYRQQGDHAQANDLLERAL----FAFERAFHPSFSPFRSNLTSGNCRLDYR 95 (360)
T ss_pred HHccCHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHhhhhhcccccCccccCCc
Confidence 344455555555422 12244555566667778888888877777653 11110000000 00 0000000000000
Q ss_pred CCCChhhHHH---HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCchHHHHHHHHH
Q 041942 229 PKRDVVSWNA---MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC-ADLGDLEVGKKVHCTL 294 (498)
Q Consensus 229 ~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~~a~~~~~~~ 294 (498)
...|...|.+ .|..+.+.|-+..|+++-+-+......-|+......|..| .+.++++-..++++..
T Consensus 96 ~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 96 RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 1124555544 3567788899999999999888877555777777777776 4667777677776433
No 437
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.63 E-value=2.6e+02 Score=27.00 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRP--TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...|+.-|...|+..+|.+.++++- ++. ....+..++.+.-+.|+-.....+++..-+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLg---mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELG---MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhC---CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3456677777777777777666543 221 245666677777777776666666666655
No 438
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.44 E-value=2.3e+02 Score=26.45 Aligned_cols=57 Identities=12% Similarity=0.030 Sum_probs=30.9
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHhccCCchHHHHHHHHHHHhhc
Q 041942 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT----ACADLGDLEVGKKVHCTLLDMTS 299 (498)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~~~~ 299 (498)
+.+.++..-|...+..+..+.+.-=..||.++-- .....+..++|.+..-++++...
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~ 347 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGE 347 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCc
Confidence 4455667777777777766655555556655422 22344555555554435555443
No 439
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.37 E-value=21 Score=32.63 Aligned_cols=92 Identities=13% Similarity=0.015 Sum_probs=51.7
Q ss_pred hcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCCHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKK 391 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 391 (498)
..|.++.|++.|....+. ....|.--.+++.+.+++..|++-+...++ +.||. .-|-.=-.+....|+|++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 345566666666655542 233444455566666677777776666666 44542 233333334445567777777
Q ss_pred HHHHhHHhcCCCCChhHHH
Q 041942 392 YFKLMRDEYNIEPNIRHYG 410 (498)
Q Consensus 392 ~~~~~~~~~~~~p~~~~y~ 410 (498)
.+....+ .+..+....+.
T Consensus 204 dl~~a~k-ld~dE~~~a~l 221 (377)
T KOG1308|consen 204 DLALACK-LDYDEANSATL 221 (377)
T ss_pred HHHHHHh-ccccHHHHHHH
Confidence 7777666 55555544433
No 440
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.90 E-value=2.7e+02 Score=26.93 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=52.9
Q ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC-----HHHHHHHHHHhHHhcCCCCChhHH
Q 041942 338 WSTLIGGLAF---HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK-----VEEGKKYFKLMRDEYNIEPNIRHY 409 (498)
Q Consensus 338 ~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~p~~~~y 409 (498)
+..++.++.+ ..+.+.|+.++.+|.+.|..|....-..+..++...|. ..-|...++.... .|+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~-~g~------- 301 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVER-IGM------- 301 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHH-hCC-------
Confidence 4444444444 47899999999999999988875555555555554442 2223333333333 333
Q ss_pred HhhCChHHHHHHHHHHH--ccCCCCCchHHHHHHHHH
Q 041942 410 GVHGDVELGRLANKRLL--NMRKDESGDYVLLSNIYA 444 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~~~--~~~~~~~~~~~~l~~~~~ 444 (498)
.+.-..+.+-++ ...|++-.+|..+-.+..
T Consensus 302 -----pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 302 -----PEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred -----cHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 322222222222 456777777777655543
No 441
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.76 E-value=1.2e+02 Score=22.73 Aligned_cols=28 Identities=18% Similarity=0.446 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRS 261 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 261 (498)
.-|..++..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3577788888888888888888888776
No 442
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.54 E-value=53 Score=21.55 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=17.1
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 041942 81 AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114 (498)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 114 (498)
...|++=+|-++++.+-.....|....+..+|..
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 3466666666666666543223344445555544
No 443
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.45 E-value=2.6e+02 Score=26.66 Aligned_cols=54 Identities=15% Similarity=-0.061 Sum_probs=35.8
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH--hccCCchHHHHHHHHHHH
Q 041942 242 GYVLCGMNKQALEMFEEMRSVGERPDDV--TMLSLLTAC--ADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~--~~~~~~~~a~~~~~~~~~ 296 (498)
.+.+.+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444778888999998888876 555444 344444554 356677888888854443
No 444
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.27 E-value=36 Score=22.59 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=32.4
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 117 (498)
.|....++.++...++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34555677777777777777777777777777763 456666665555544
No 445
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=46.59 E-value=2.1e+02 Score=28.31 Aligned_cols=115 Identities=8% Similarity=0.042 Sum_probs=72.5
Q ss_pred cccchHHHHHHhhch--------------hhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---
Q 041942 4 NRHRSSRLWKKCTNL--------------RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--- 66 (498)
Q Consensus 4 ~~~~~~~~l~~~~~~--------------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--- 66 (498)
++..++.+|.+|+.. ..++.....+.+.. .-+...|..+...+..+ +|+.+.|..++.+++
T Consensus 16 ~~illa~vla~C~t~~~~~~~~~lq~~a~a~s~~yl~qa~qs~-~~~~~~~~llAa~al~~-e~k~~qA~~Ll~ql~~~L 93 (604)
T COG3107 16 TPILLALVLAGCSTFLPSGSVVLLQGTANASSQFYLQQAQQSS-GEQQNDWLLLAARALVE-EGKTAQAQALLNQLPQEL 93 (604)
T ss_pred HHHHHHHHHHhhccCCCCCchhhccCCcchhHHHHHHHHhhcC-chhhhhHHHHHHHHHHH-cCChHHHHHHHHhccccC
Confidence 345567788888632 12344444444432 24445555554446777 999999999999998
Q ss_pred CCChhhHHHHHHH--HhccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHhhcccc
Q 041942 67 EPDTFMYNTIIRG--SAQSQNPLDAVFLYTQMEKCSIKPN--KFTFSFVLKACTRLLY 120 (498)
Q Consensus 67 ~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~ 120 (498)
.+.....-+++.+ .....++..|.+.|.+.....+.++ ...|...+.++...|+
T Consensus 94 td~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ea~~~ 151 (604)
T COG3107 94 TDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARADALEARGD 151 (604)
T ss_pred CHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHHHHHHHhcccc
Confidence 3334455556654 3557789999999998877666666 3455555665555543
No 446
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.56 E-value=1.1e+02 Score=24.26 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 282 (498)
..++..+...++.-.|.++++++.+.+...+..|....+..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555555555555566665555554444444444444444333
No 447
>PRK09462 fur ferric uptake regulator; Provisional
Probab=45.88 E-value=1.5e+02 Score=23.55 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=42.0
Q ss_pred HHHHhCCCCCCHhhHHHHHHHhhcc-cchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChh
Q 041942 94 TQMEKCSIKPNKFTFSFVLKACTRL-LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN 157 (498)
Q Consensus 94 ~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (498)
+.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345566777665443 334444443 467789999999998887777777666777777777543
No 448
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.84 E-value=81 Score=26.48 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=12.2
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
++..|..++.++...|+.++|.++..++..
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333334444444444444444444433
No 449
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=45.48 E-value=2.9e+02 Score=26.67 Aligned_cols=51 Identities=6% Similarity=-0.082 Sum_probs=20.6
Q ss_pred hhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 041942 162 LFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGY 212 (498)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 212 (498)
+.+.+..++.........++.+.+...-...+..-+..+++......+.++
T Consensus 91 L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al 141 (410)
T TIGR02270 91 VLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAAL 141 (410)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 333333344444444455554444444333333333333333333333333
No 450
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.35 E-value=1.4e+02 Score=23.01 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
..|..-...+...|++++|.++|+
T Consensus 100 ~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 100 LFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444445555555555555544
No 451
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.34 E-value=1.4e+02 Score=23.02 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=10.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHH
Q 041942 436 YVLLSNIYASRGEWNRVEKVRK 457 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~ 457 (498)
|...+..+...|++.+|.++|+
T Consensus 102 Ye~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 102 YEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444555555555555443
No 452
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=44.61 E-value=1.4e+02 Score=22.81 Aligned_cols=90 Identities=16% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHH--CCCCC---------CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChH
Q 041942 348 HGFAEESIAMFREMQR--LKVRP---------TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVE 416 (498)
Q Consensus 348 ~~~~~~A~~~~~~m~~--~~~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~ 416 (498)
.|-+++|..-+++..+ .-++| |..++..|-.++...|+++++..--+..
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a-------------------- 81 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA-------------------- 81 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH--------------------
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------------------
Confidence 4556666555554332 22333 2345667778888888888877655443
Q ss_pred HHHHHHHHHHccCCCCCchH----HHHHHHHHhCCCchHHHHHHHHh
Q 041942 417 LGRLANKRLLNMRKDESGDY----VLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
..+|++=-+++.+....| ..-+.++...|+.++|+..|+..
T Consensus 82 --L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 82 --LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp --HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred --HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 334444444444443333 33456778889999999888754
No 453
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=44.08 E-value=2.5e+02 Score=25.56 Aligned_cols=146 Identities=5% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHhhCC---------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041942 208 MITGYAKQGEMEKANELFNEVP---------KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278 (498)
Q Consensus 208 l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 278 (498)
+...|...++++.....+++.. .|+..+-......+...|--+-..-.=.++-. ..-...-..|..-.
T Consensus 189 lFk~~~~Ek~i~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~---~a~kElq~~L~~q~ 265 (412)
T KOG2297|consen 189 LFKEWLVEKDINDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE---GARKELQKELQEQV 265 (412)
T ss_pred HHHHHHhhccHHHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
.+...+++.....++.++...+ |++.+...+-++......|.+-.++...-.-+...+|..|+.+++.+|+.+-.+-+
T Consensus 266 s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHH
No 454
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=43.97 E-value=57 Score=18.08 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVG 375 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~ 375 (498)
.++.|..+|++.+. +.|+..+|..
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHH
Confidence 35566666666666 4466555543
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.86 E-value=2.6e+02 Score=25.56 Aligned_cols=84 Identities=10% Similarity=0.053 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHH----------hcCChHHHHHHHh
Q 041942 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA----------RRGELSMARSLFD 195 (498)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~ 195 (498)
++++.+.+.++.|.-..+.-+.-.+...=.+.++..+++.+... ..-|..++..|| -.|++...++++.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQRFDFLLYICCSMLILVRERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 45555556666666655555555555555566666666655431 111444444333 2567777777776
Q ss_pred cCCCCCcchHHHHHH
Q 041942 196 EMPVRDLVSWNVMIT 210 (498)
Q Consensus 196 ~~~~~~~~~~~~l~~ 210 (498)
.....|......+.+
T Consensus 343 ~yp~tdi~~~l~~A~ 357 (370)
T KOG4567|consen 343 NYPTTDISKMLAVAD 357 (370)
T ss_pred cCCCCCHHHHHHHHH
Confidence 665555444444433
No 456
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.49 E-value=4.3e+02 Score=28.08 Aligned_cols=44 Identities=18% Similarity=0.122 Sum_probs=27.5
Q ss_pred CCChHHHHHhcccCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHH
Q 041942 52 PGAINYAHKMFVKITEPDT--FMYNTIIRGSAQSQNPLDAVFLYTQME 97 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~ 97 (498)
.|.++.|.+.-+.- |+. .++-.-...+.+.+++..|-++|.++.
T Consensus 371 ~g~y~kAL~~ar~~--p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 371 KGEFDKALEIARTR--PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred cchHHHHHHhccCC--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 78888887765443 222 233333445667778888888887773
No 457
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=43.49 E-value=1.6e+02 Score=23.13 Aligned_cols=66 Identities=11% Similarity=0.018 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHHHHHHHHHHccCCCCCc
Q 041942 367 RPTEITFVGVLVACSHAGK---VEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 367 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
.++..+--.+..++.+..+ ..+.+.+++.+.+ .-.|+ ...+.+.++++++.++.+.+++.+|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3444444455555555543 3344555555543 12232 12222667777777777777777777654
No 458
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.45 E-value=2.4e+02 Score=25.13 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=87.1
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc--CCHHHHHHHHHHhHHhcCCCCChhHHH-----hhCChH-
Q 041942 345 LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA--GKVEEGKKYFKLMRDEYNIEPNIRHYG-----VHGDVE- 416 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~y~-----~~g~~~- 416 (498)
+.+.....+|+++-.+.+. +.|-..|....-+.+.+. .++.+=.+.+.++.++.+-+-.+=++. ..|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~--lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIR--LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHH--hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 4456677889999999888 456555443333333222 246666777777766321111122222 566776
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCce
Q 041942 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 470 (498)
+-....+.++..+.++..+|..--+++..-+.+++=+.+..+|.+.++.-+..+
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 777888999999999999999999999999999999999999999988765554
No 459
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.55 E-value=1.1e+02 Score=29.14 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCChhHHHHhhccCCCCCc----------------chHHHHHHHHHhcCChHHHHHHHhcCC-------
Q 041942 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDV----------------VAWSSLTAGYARRGELSMARSLFDEMP------- 198 (498)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~------- 198 (498)
....++..+....++.+.++..+....++. .+...|++.++-.|++..|+++++.+.
T Consensus 77 ~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~ 156 (404)
T PF10255_consen 77 SVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLY 156 (404)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhh
Confidence 334456666777777777777766544322 123456677788899999999988776
Q ss_pred ----CCCcchHHHHHHHHHhcCChHHHHHHHhhC
Q 041942 199 ----VRDLVSWNVMITGYAKQGEMEKANELFNEV 228 (498)
Q Consensus 199 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (498)
.-.+.+|-.+.-+|.-.+++.+|.+.|..+
T Consensus 157 ~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 157 TKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred ccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122346666777888888999998888764
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.46 E-value=1.1e+02 Score=25.13 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=18.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 282 (498)
++..+...++.-.|.++++.+.+.+..++..|....+..+...|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333333344445555555554444444444433343333333
No 461
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.76 E-value=3.7e+02 Score=26.84 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--CC---hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD--RD---VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 382 (498)
..|+.-|.+.+++++|..++..|.= -. ..+.+.+...+.+..--++....++.+...=..|....-.....-|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 4577889999999999999998872 12 234455555666665455556666666654343432222222222222
Q ss_pred cCCHHHHHHHHHHhHH
Q 041942 383 AGKVEEGKKYFKLMRD 398 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~ 398 (498)
-=.+-|+++|..+.+
T Consensus 492 -~V~~~aRRfFhhLLR 506 (545)
T PF11768_consen 492 -PVSDLARRFFHHLLR 506 (545)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 123446666666655
No 462
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.70 E-value=2.9e+02 Score=25.57 Aligned_cols=96 Identities=9% Similarity=-0.040 Sum_probs=47.2
Q ss_pred CcchhhHHHHHHHHHhcCC------------HHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 041942 301 VAKVLHGNALIDMYAKCGS------------IERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365 (498)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 365 (498)
+-|+.+|-.++..--..-. .+.-+.++++..+ .+...+-.++..+.+..+.++..+-|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~- 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK- 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-
Confidence 3456677666654332211 2233444444332 23445555566666666666666666666663
Q ss_pred CCC-CHHHHHHHHHHHhh---cCCHHHHHHHHHHhHH
Q 041942 366 VRP-TEITFVGVLVACSH---AGKVEEGKKYFKLMRD 398 (498)
Q Consensus 366 ~~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 398 (498)
.| +...|...+..... .-.++....+|.+...
T Consensus 95 -~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 95 -NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred -CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 23 34555555543332 2234555555544433
No 463
>PF15469 Sec5: Exocyst complex component Sec5
Probab=41.62 E-value=1.1e+02 Score=25.48 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=14.5
Q ss_pred CchHHHHHHHHhhhCCCccCCceeEE
Q 041942 448 EWNRVEKVRKLMDDSDIKKQPGCSLI 473 (498)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~~~~~~~~~ 473 (498)
..++...+++.+.+.++..+|.+.|+
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 34455555555666666555655544
No 464
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=41.30 E-value=77 Score=27.37 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=48.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 344 GLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 344 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
...+.++.+.|.+++.+... +.|. ...|-.+-..-.+.|+++.|.+.+++..+ +.|+
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~---ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE---LDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc---CCcc
Confidence 45678899999999999988 5564 67888888888999999999999999977 6665
No 465
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.29 E-value=1.3e+02 Score=21.56 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=26.2
Q ss_pred HhCCChHHHHHHHHHHH----hCCCCCC----HHHHHHHHHHHhccCCchHHHHHHHHHHHhhc
Q 041942 244 VLCGMNKQALEMFEEMR----SVGERPD----DVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~----~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 299 (498)
.+.|++.+|.+.+.+.. ..+.... ......+.......|+.++|...+++.+....
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35667766655544443 2221111 11222233344556666666666655554433
No 466
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=41.27 E-value=65 Score=18.66 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=23.6
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+|..|+..-...+++++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4688899999999999999988888754
No 467
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=40.99 E-value=2.2e+02 Score=23.96 Aligned_cols=23 Identities=9% Similarity=-0.091 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhccCCchHHHHHH
Q 041942 269 VTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 269 ~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
...+.....+.+.|.++.|..++
T Consensus 182 qivn~AaEiFL~sgsidGA~~vL 204 (233)
T PF14669_consen 182 QIVNIAAEIFLKSGSIDGALWVL 204 (233)
T ss_pred hhHHHHHHHHHHcCCchHHHHHH
Confidence 34455555556666666666555
No 468
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.95 E-value=56 Score=25.50 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=41.4
Q ss_pred hhCChHHHHHHHHHHHc-cCCCC-CchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 411 VHGDVELGRLANKRLLN-MRKDE-SGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
...+..++..+++...+ -.|.. ......|+-++.+.|+|+.++++.+.+.+..
T Consensus 47 ~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 34568889999999996 44443 3566778888999999999999998887654
No 469
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=40.81 E-value=4.6e+02 Score=27.65 Aligned_cols=381 Identities=9% Similarity=-0.051 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcc---cchhhHHHHHHHHHHhCCCCChHHHHH
Q 041942 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL---LYRNMGFCVHGKIVKYGFEFNRFVRNS 145 (498)
Q Consensus 69 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 145 (498)
+...+..||..+-+.|++++....-..|... .+.++..|..-+...... ++...+..+|++.+..-..++...+..
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~ 190 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVV 190 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHH
Q ss_pred HHHHHHhc-----CChhHHHHhhccCCC----------CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHH
Q 041942 146 LIYFHANC-----GDLNTASVLFDGDAK----------MDVVAWSSLTAGYARRGELSMARSLFDEMP--VRDLVSWNVM 208 (498)
Q Consensus 146 l~~~~~~~-----g~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 208 (498)
.-..=... ++++....+|+...+ .....|.-+-..|...-..++...+|..-. +.|..+-+.-
T Consensus 191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~ 270 (881)
T KOG0128|consen 191 NYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWD 270 (881)
T ss_pred HHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHH
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHH
Q 041942 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK 288 (498)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 288 (498)
+.-..+...++.+..-++.+.+ +..+-+..+.+..+.- .+-...|..+|.-+-..|+.-...
T Consensus 271 ~~~~sk~h~~~~~~~~~~~a~~-----------------~l~~~~~~~e~~~q~~-~~~~q~~~~yidfe~~~G~p~ri~ 332 (881)
T KOG0128|consen 271 LSEQSKAHVYDVETKKLDDALK-----------------NLAKILFKFERLVQKE-PIKDQEWMSYIDFEKKSGDPVRIQ 332 (881)
T ss_pred HHHHHhcchHHHHhccHHHHHH-----------------HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchHHH
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 041942 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368 (498)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 368 (498)
.+++.........++..+ .-=...=...+-.+.+.....+.....+.+....-++.....+..+-.+++..-....+.-
T Consensus 333 l~~eR~~~E~~~~~~~wi-~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~ 411 (881)
T KOG0128|consen 333 LIEERAVAEMVLDRALWI-GYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM 411 (881)
T ss_pred HHHHHHHHhccccHHHHh-hhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q ss_pred CHHHHHHHHHHHhhcCC-------------HHHHHHHHHHhHHhcCCCCChhHHH--------hhCChHHHHHHHHHHHc
Q 041942 369 TEITFVGVLVACSHAGK-------------VEEGKKYFKLMRDEYNIEPNIRHYG--------VHGDVELGRLANKRLLN 427 (498)
Q Consensus 369 ~~~~~~~l~~~~~~~g~-------------~~~a~~~~~~~~~~~~~~p~~~~y~--------~~g~~~~a~~~~~~~~~ 427 (498)
....++..+.-..+.++ ++.|...|..... ....+...... .+++.+.++.+++....
T Consensus 412 ~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~-~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 412 TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYG-DQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Q ss_pred cCCCCCc-hHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCce
Q 041942 428 MRKDESG-DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470 (498)
Q Consensus 428 ~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 470 (498)
..-.+.. .|...+..-...|+...+..+++.....-..|..++
T Consensus 491 y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ 534 (881)
T KOG0128|consen 491 YGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDAL 534 (881)
T ss_pred CCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHH
No 470
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=40.72 E-value=2.4e+02 Score=24.36 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=25.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
.++.+.+.+..++++...++-++. +|. ..+-..+++.++-.|+|++|..-++.+.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344444455555555555444442 232 2333334445555555555555444443
No 471
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.35 E-value=65 Score=31.95 Aligned_cols=84 Identities=8% Similarity=-0.049 Sum_probs=66.0
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCCC------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEPN------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p~------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
.-.|+...|...+....-..+...+ +....+.|-.-+|-..+.+.+.+....|-++..++++|.-..+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 3468888899888877553333333 2222366777889999999999998889999999999999999999999
Q ss_pred HHHHhhhCCC
Q 041942 455 VRKLMDDSDI 464 (498)
Q Consensus 455 ~~~~m~~~~~ 464 (498)
.|+...+...
T Consensus 698 ~~~~a~~~~~ 707 (886)
T KOG4507|consen 698 AFRQALKLTT 707 (886)
T ss_pred HHHHHHhcCC
Confidence 9999987654
No 472
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.21 E-value=2.8e+02 Score=25.03 Aligned_cols=98 Identities=9% Similarity=0.058 Sum_probs=45.4
Q ss_pred hcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhHHH---HHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 041942 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR------DVSTWS---TLIGGLAFHGFAEESIAMFREMQRLKVRP 368 (498)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~---~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 368 (498)
+|.......+..+...|++.++.+.+.+..++..+. ....+- .|.-.|....-.++-++..+.|++.|...
T Consensus 109 ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 109 NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 333344455555666666666666666555443321 111111 12223333334556666666666666544
Q ss_pred CH----HHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 369 TE----ITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 369 ~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
+. .+|..+.. ....++.+|-.++....
T Consensus 189 eRrNRyK~Y~Gi~~--m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 189 ERRNRYKVYKGIFK--MMRRNFKEAAILLSDIL 219 (412)
T ss_pred HhhhhHHHHHHHHH--HHHHhhHHHHHHHHHHh
Confidence 32 23332221 22335556655555443
No 473
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.94 E-value=2.6e+02 Score=24.27 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=56.7
Q ss_pred HHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCC-c-chHHHHHHHHHhcCChHHHHHHHhh
Q 041942 150 HANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRD-L-VSWNVMITGYAKQGEMEKANELFNE 227 (498)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~ 227 (498)
+...+++++|.+.+-...-. ..--..++.++...|+.+.|+.+++...++- . .....++.. ..++.+.+|..+-+.
T Consensus 88 ~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred HhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 34456777777777443211 1122347777777888888888888876322 2 222223333 666888888887777
Q ss_pred CCCCC-hhhHHHHHHHHHhCC
Q 041942 228 VPKRD-VVSWNAMISGYVLCG 247 (498)
Q Consensus 228 ~~~~~-~~~~~~l~~~~~~~g 247 (498)
..++. ...+..++..+....
T Consensus 166 ~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 166 YPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred CchhhhHHHHHHHHHHHHHHh
Confidence 66532 345666666655433
No 474
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.38 E-value=2.5e+02 Score=23.82 Aligned_cols=62 Identities=8% Similarity=0.008 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI-TFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...+.++..+...|+++.|-++|.-++... ..|.. .|..=+..+.+.+......+.++.+..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 455667777777777777777777777642 33433 344444555555555444466665544
No 475
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=36.95 E-value=74 Score=28.24 Aligned_cols=56 Identities=13% Similarity=-0.003 Sum_probs=32.4
Q ss_pred HHHhhcCCHHHHHHHHHHhHHhcCCCC-----ChhHHHhhCChHHHHHHHHHHHccCCCCC
Q 041942 378 VACSHAGKVEEGKKYFKLMRDEYNIEP-----NIRHYGVHGDVELGRLANKRLLNMRKDES 433 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~y~~~g~~~~a~~~~~~~~~~~~~~~ 433 (498)
.++.+.++++.|....++...-.+..| -...|.+.|...-|...++..++.-|+++
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 456666666666666666655112222 25556666666666666666666556554
No 476
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.72 E-value=1.6e+02 Score=24.22 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
-..++..+...++.-.|.++++++.+.+..++..|.-.-+..+.+.|-
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 334455555555666777777777777666666665555566665553
No 477
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.39 E-value=1.3e+02 Score=21.95 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHccC-CCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCce
Q 041942 416 ELGRLANKRLLNMR-KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470 (498)
Q Consensus 416 ~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 470 (498)
+.-++.++++...+ +-.|.....|+-.|.+.|+.+.|.+-|+.=+. ..|..+.
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~ 107 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGV 107 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchh
Confidence 33345555555433 33456778888889999999888888876433 3344443
No 478
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=36.13 E-value=3.9e+02 Score=25.40 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=37.8
Q ss_pred HHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHH
Q 041942 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 377 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (498)
++.|...+++-.|.-+-+++..++--.|+... .-.+ .|+.|+......+.|=++-..|
T Consensus 178 mrKOG~~~D~vra~i~skKI~~K~F~~~~~~~--------lKlk--------------yY~lmI~l~lh~~~Yl~v~~~Y 235 (439)
T KOG1498|consen 178 MRLCLLRLDYVRAQIISKKINKKFFEKPDVQE--------LKLK--------------YYELMIRLGLHDRAYLNVCRSY 235 (439)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHhcCCccHHH--------HHHH--------------HHHHHHHhcccccchhhHHHHH
Confidence 35667777888887777777664444444221 1122 3555555555566666666666
Q ss_pred HHhhhCCC
Q 041942 457 KLMDDSDI 464 (498)
Q Consensus 457 ~~m~~~~~ 464 (498)
+..-..|.
T Consensus 236 raiy~t~~ 243 (439)
T KOG1498|consen 236 RAIYDTGN 243 (439)
T ss_pred HHHhcccc
Confidence 66655544
No 479
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=36.12 E-value=83 Score=21.96 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=7.5
Q ss_pred CCChHHHHHhcccC
Q 041942 52 PGAINYAHKMFVKI 65 (498)
Q Consensus 52 ~~~~~~A~~~~~~~ 65 (498)
.|+++-...+++..
T Consensus 7 ~~~~~~~~~ll~~~ 20 (89)
T PF12796_consen 7 NGNLEILKFLLEKG 20 (89)
T ss_dssp TTTHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHCc
Confidence 45555555555533
No 480
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.53 E-value=98 Score=23.06 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=12.3
Q ss_pred HHHHHHhccCChHHHHHHHHHH
Q 041942 75 TIIRGSAQSQNPLDAVFLYTQM 96 (498)
Q Consensus 75 ~ll~~~~~~g~~~~A~~~~~~m 96 (498)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666666654
No 481
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.56 E-value=1.5e+02 Score=30.58 Aligned_cols=21 Identities=0% Similarity=-0.130 Sum_probs=12.6
Q ss_pred hhCChHHHHHHHHHHHccCCC
Q 041942 411 VHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~ 431 (498)
..+..+.|...|+++.+..|.
T Consensus 299 Da~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 299 DAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred chhhHHHHHHHHHHHhccCch
Confidence 444555666666666666665
No 482
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.48 E-value=98 Score=20.58 Aligned_cols=50 Identities=12% Similarity=-0.035 Sum_probs=37.4
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 041942 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH 382 (498)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 382 (498)
.+....++.++..+++..-.++++..+.++...|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34556778888888888888999999999998874 566777777776665
No 483
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.27 E-value=1e+02 Score=23.12 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=33.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCch
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 285 (498)
.++..+...+..-.|.++++.+.+.+..++..|....+..+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 345555566667778888888888777777777777777776666543
No 484
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=34.22 E-value=3.8e+02 Score=24.70 Aligned_cols=71 Identities=11% Similarity=0.182 Sum_probs=42.8
Q ss_pred HHHHHHhHHhcCCCCC----hhHHH----hhCChHHHHHHHHHHHccCCC-CCch----HHHHHHHHHhCCCchHHHHHH
Q 041942 390 KKYFKLMRDEYNIEPN----IRHYG----VHGDVELGRLANKRLLNMRKD-ESGD----YVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 390 ~~~~~~~~~~~~~~p~----~~~y~----~~g~~~~a~~~~~~~~~~~~~-~~~~----~~~l~~~~~~~g~~~~A~~~~ 456 (498)
...++.+.+.+++.|+ ..-|. .||++..|-.++-....+.++ ++.. |..++. -.-.-+|+-|++-+
T Consensus 112 ~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlAS-EIL~qnWd~A~edL 190 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLAS-EILTQNWDGALEDL 190 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHH-HHHHhhHHHHHHHH
Confidence 5677777777888888 22222 889999888766655544333 3222 222221 22246899898876
Q ss_pred HHhhh
Q 041942 457 KLMDD 461 (498)
Q Consensus 457 ~~m~~ 461 (498)
-++++
T Consensus 191 ~rLre 195 (432)
T KOG2758|consen 191 TRLRE 195 (432)
T ss_pred HHHHH
Confidence 66654
No 485
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.96 E-value=2.9e+02 Score=23.94 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=33.1
Q ss_pred CCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---C--CChhhHH--HHHHHHhccCChHHHHHHHHHHHh
Q 041942 33 FNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---E--PDTFMYN--TIIRGSAQSQNPLDAVFLYTQMEK 98 (498)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~--~~~~~~~--~ll~~~~~~g~~~~A~~~~~~m~~ 98 (498)
..++....+.|+- -|.. ...+.+|.+.|..-. + .+..+++ .-|......|+.+.|++..+.+..
T Consensus 22 ~~~~~~d~n~LVm-nylv-~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 22 VSVMREDLNRLVM-NYLV-HEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred cCcchhhHHHHHH-HHHH-hccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 3455555555555 3333 344444555554332 2 2333333 244555677777777777776643
No 486
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.72 E-value=3.3e+02 Score=23.61 Aligned_cols=98 Identities=17% Similarity=0.117 Sum_probs=60.7
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHhcCC---C--CChhHHH--HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041942 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMR---D--RDVSTWS--TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373 (498)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~--~~~~~~~--~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 373 (498)
.+...-++.|+--|.-...+.+|-+.|..-. . .|..+++ .-|......|+.+.|++....+.-.-+.-|...+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 3444445666666666666666777775432 2 2444443 3566778899999999998887543344444333
Q ss_pred HHHH----HHHhhcCCHHHHHHHHHHhHH
Q 041942 374 VGVL----VACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 374 ~~l~----~~~~~~g~~~~a~~~~~~~~~ 398 (498)
-.|. --..+.|..++|.++.+.-..
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 3333 224678888888888876544
No 487
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.58 E-value=6.4e+02 Score=26.91 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 041942 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260 (498)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 260 (498)
..|...|++++|.++-..-.+.=..++..-...|.+.+++..|-++|-++.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 446677777777776554311111234444556667777777777777763
No 488
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=31.89 E-value=1.2e+02 Score=18.13 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=27.8
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
.|..++-..|++...+..++.-+-.+|+...|.-
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~raef 37 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARAEF 37 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHhH
Confidence 4556666789999999999999999999976643
No 489
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.78 E-value=1.5e+02 Score=19.42 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=15.5
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 276 (498)
...|++=+|-++++.+-.....+....+..+|.
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 345666666666666553322233344444443
No 490
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=31.71 E-value=85 Score=21.32 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=15.2
Q ss_pred hHHHHHhcccCC---CCChhhHHHHHHHHhcc
Q 041942 55 INYAHKMFVKIT---EPDTFMYNTIIRGSAQS 83 (498)
Q Consensus 55 ~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 83 (498)
.+-|..++..+. ++++..||++...+.++
T Consensus 13 tEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 445555555554 44555666655555443
No 491
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.66 E-value=1e+02 Score=28.45 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhhhCCCcc
Q 041942 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466 (498)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 466 (498)
.|..++..+...|.+++++.+|+++...|-.|
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqP 173 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQP 173 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCh
Confidence 46666666666666666666666666666665
No 492
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.51 E-value=1.3e+02 Score=20.87 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=17.3
Q ss_pred cchHHHHHHhhchhhhHHHHHHHHHhc
Q 041942 6 HRSSRLWKKCTNLRTLKQIQALVTING 32 (498)
Q Consensus 6 ~~~~~~l~~~~~~~~a~~~~~~~~~~~ 32 (498)
++....|+.|-..+.|..+.+.+.+.|
T Consensus 35 PtV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 35 PTVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred chHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 445556666666666666666666666
No 493
>PRK14136 recX recombination regulator RecX; Provisional
Probab=31.32 E-value=4.1e+02 Score=24.28 Aligned_cols=104 Identities=9% Similarity=0.077 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhH-HH---hhCChHHHHHHHHHHHc
Q 041942 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH-YG---VHGDVELGRLANKRLLN 427 (498)
Q Consensus 352 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-y~---~~g~~~~a~~~~~~~~~ 427 (498)
+....++.++.+.|+--|..--..++... .+. ..-..+-.++.+ .|+.+++.. .. ....++.|..++++-..
T Consensus 194 e~IE~VIerLke~gYLDDeRFAesyVr~R--~~k-kGp~rIrqELrQ-KGId~eLIEqALeeieEDE~E~A~~L~eKK~~ 269 (309)
T PRK14136 194 DSVEPLLDALEREGWLSDARFAESLVHRR--ASR-VGSARIVSELKR-HAVGDALVESVGAQLRETEFERAQAVWRKKFG 269 (309)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHH--hhc-hhHHHHHHHHHH-cCCCHHHHHHHHHhccHhHHHHHHHHHHHHhc
Confidence 44556666777766655544434444332 222 122344555555 677666221 11 12234555555555443
Q ss_pred cCCCCCchHHHHHHHHHhCCC-chHHHHHHHHh
Q 041942 428 MRKDESGDYVLLSNIYASRGE-WNRVEKVRKLM 459 (498)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m 459 (498)
..+.++.-...++..+...|- ++....+++..
T Consensus 270 ~~~~d~kek~K~iRfL~rRGFS~D~I~~vLk~~ 302 (309)
T PRK14136 270 ALPQTPAERAKQARFLAARGFSSATIVKLLKVG 302 (309)
T ss_pred ccCcCHHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 334444445666777777773 45455555543
No 494
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=31.27 E-value=79 Score=23.99 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 284 (498)
..++..+...+..-.|.++++.+.+.|...+..|.-..+..+...|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 356666667677788888888888888788877776667766666543
No 495
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=31.24 E-value=2.2e+02 Score=31.46 Aligned_cols=24 Identities=21% Similarity=0.036 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHhh
Q 041942 140 RFVRNSLIYFHANCGDLNTASVLF 163 (498)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~ 163 (498)
...|..|...+-+.|+.++|...-
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhc
Confidence 344555555555556665555543
No 496
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.19 E-value=1.2e+02 Score=22.65 Aligned_cols=47 Identities=13% Similarity=0.050 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 386 (498)
.++..+...+..-.|.++++++.+.+..++..|.-..+..+.+.|-.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 35556666677778889999998887777777777777777776643
No 497
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.16 E-value=4e+02 Score=26.34 Aligned_cols=101 Identities=9% Similarity=0.041 Sum_probs=59.1
Q ss_pred HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHh
Q 041942 250 KQALEMFEEMR-SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328 (498)
Q Consensus 250 ~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (498)
+.....++... ..|+..+......++. ...|+...|..++++.+...+. ..++..+ .+++
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~---~it~~~V-------------~~~l- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDS---KLTGVKI-------------RKMI- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCC---CcCHHHH-------------HHHh-
Confidence 34445555443 4577777776655554 3458888888888554432211 1122222 1222
Q ss_pred cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 041942 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371 (498)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 371 (498)
.-.+...+..++......+....|+.++.++.+.|..|...
T Consensus 244 --g~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 244 --GYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred --CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 11245556666776666666678999999999999877654
No 498
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.14 E-value=2.2e+02 Score=21.10 Aligned_cols=60 Identities=10% Similarity=0.178 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCC--hhHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRDRD--VSTWSTLIGGLAFHG--FAEESIAMFREMQRLKVRP 368 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~~p 368 (498)
.++..|...|+.++|...+.++..|+ ......++......+ .-+.+..++..+.+.+.-+
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 45666777788888888888876552 123333444444442 2234555666666655433
No 499
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.91 E-value=3.8e+02 Score=23.70 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
+-..-.++...|++-++++--.+..... +-|...|-.-..+.+..-+.++|..-|..+.+ ..|.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~---ldps 296 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE---LDPS 296 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh---cChh
Confidence 3334445555667777776666666632 33455665555666666667777777776655 4554
No 500
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.85 E-value=2e+02 Score=25.38 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=11.3
Q ss_pred HHHHhccCChHHHHHHHHH
Q 041942 77 IRGSAQSQNPLDAVFLYTQ 95 (498)
Q Consensus 77 l~~~~~~g~~~~A~~~~~~ 95 (498)
++.+...|++.+|++-|+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 4556666666666655544
Done!