Query 041942
Match_columns 498
No_of_seqs 544 out of 2774
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 21:17:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-37 5E-42 313.5 33.8 423 34-464 81-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-37 3.9E-42 314.3 30.4 404 52-463 66-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3E-27 1E-31 224.9 35.8 362 78-448 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-25 7.8E-30 211.9 37.0 363 10-382 7-385 (388)
5 4g26_A Pentatricopeptide repea 99.9 3.6E-27 1.2E-31 228.3 17.4 206 88-316 8-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.6E-26 5.5E-31 223.8 20.5 175 234-410 27-214 (501)
7 3fp2_A TPR repeat-containing p 99.9 2.1E-23 7.3E-28 207.1 30.1 414 38-464 26-493 (537)
8 2gw1_A Mitochondrial precursor 99.9 2.4E-23 8.3E-28 205.5 29.9 410 47-464 15-480 (514)
9 2gw1_A Mitochondrial precursor 99.9 2.7E-23 9.3E-28 205.1 26.3 418 10-440 14-490 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 2E-22 6.8E-27 195.5 31.5 362 68-451 24-443 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 4.1E-22 1.4E-26 193.3 29.1 343 88-459 10-406 (450)
12 3fp2_A TPR repeat-containing p 99.9 7.6E-21 2.6E-25 188.7 25.9 415 11-439 34-502 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 4.8E-19 1.6E-23 165.9 28.4 284 176-463 8-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1.6E-18 5.5E-23 162.3 29.9 300 70-398 3-334 (359)
15 1b89_A Protein (clathrin heavy 99.8 4.5E-20 1.5E-24 170.5 18.6 373 52-456 16-411 (449)
16 1fch_A Peroxisomal targeting s 99.8 1.3E-18 4.4E-23 163.9 22.3 282 152-460 37-357 (368)
17 3hym_B Cell division cycle pro 99.8 7.8E-18 2.7E-22 155.8 26.9 277 170-449 21-321 (330)
18 4g1t_A Interferon-induced prot 99.8 4.9E-18 1.7E-22 165.7 26.1 382 69-473 50-470 (472)
19 3hym_B Cell division cycle pro 99.8 1.1E-17 3.9E-22 154.7 25.6 278 67-380 19-314 (330)
20 1b89_A Protein (clathrin heavy 99.8 2.7E-17 9.4E-22 152.0 25.2 293 6-329 7-307 (449)
21 1xi4_A Clathrin heavy chain; a 99.8 2.7E-16 9.1E-21 161.8 34.8 361 47-455 994-1377(1630)
22 2ooe_A Cleavage stimulation fa 99.8 1E-15 3.5E-20 151.3 37.3 403 34-463 10-493 (530)
23 2xm6_A Protein corresponding t 99.8 1.7E-15 5.8E-20 148.2 35.5 314 69-398 38-395 (490)
24 4eqf_A PEX5-related protein; a 99.8 1.3E-17 4.4E-22 156.8 19.6 268 170-458 64-352 (365)
25 1xi4_A Clathrin heavy chain; a 99.8 5.8E-15 2E-19 152.1 39.6 350 68-458 983-1341(1630)
26 2ooe_A Cleavage stimulation fa 99.8 5.9E-16 2E-20 153.1 31.9 369 67-464 10-456 (530)
27 3mkr_A Coatomer subunit epsilo 99.8 2.2E-16 7.5E-21 142.8 25.9 216 239-462 40-264 (291)
28 4eqf_A PEX5-related protein; a 99.8 4.5E-17 1.5E-21 153.1 20.8 274 53-329 45-352 (365)
29 1fch_A Peroxisomal targeting s 99.8 6.9E-17 2.4E-21 152.0 20.5 275 52-359 38-354 (368)
30 2xm6_A Protein corresponding t 99.7 9.9E-15 3.4E-19 142.8 35.8 331 52-398 56-431 (490)
31 3mkr_A Coatomer subunit epsilo 99.7 5.4E-16 1.8E-20 140.2 24.1 182 209-398 41-228 (291)
32 3cv0_A Peroxisome targeting si 99.7 2E-16 6.9E-21 146.0 19.6 254 170-461 20-314 (327)
33 3cv0_A Peroxisome targeting si 99.7 9.3E-16 3.2E-20 141.5 20.0 260 69-331 20-313 (327)
34 4g1t_A Interferon-induced prot 99.7 5E-14 1.7E-18 137.2 29.8 375 34-440 48-471 (472)
35 3spa_A Mtrpol, DNA-directed RN 99.7 3.7E-17 1.3E-21 163.1 7.4 151 33-185 123-286 (1134)
36 3uq3_A Heat shock protein STI1 99.6 1.4E-14 4.7E-19 128.7 18.4 219 234-463 6-237 (258)
37 3spa_A Mtrpol, DNA-directed RN 99.6 2.2E-15 7.5E-20 150.5 14.2 144 303-447 126-286 (1134)
38 2pl2_A Hypothetical conserved 99.6 6.6E-14 2.2E-18 120.8 19.1 202 233-460 5-212 (217)
39 3u4t_A TPR repeat-containing p 99.6 2.1E-13 7.2E-18 122.2 22.8 241 203-447 4-269 (272)
40 3e4b_A ALGK; tetratricopeptide 99.6 2E-13 6.7E-18 131.6 23.8 370 8-398 9-420 (452)
41 3e4b_A ALGK; tetratricopeptide 99.6 5.6E-14 1.9E-18 135.4 18.1 364 52-462 16-421 (452)
42 3uq3_A Heat shock protein STI1 99.6 6.4E-14 2.2E-18 124.3 15.3 218 71-296 6-235 (258)
43 1ouv_A Conserved hypothetical 99.5 2.4E-12 8.2E-17 115.4 24.0 219 233-465 6-254 (273)
44 2ho1_A Type 4 fimbrial biogene 99.5 2.1E-12 7E-17 114.2 22.2 198 233-463 37-239 (252)
45 3u4t_A TPR repeat-containing p 99.5 1.5E-12 5.1E-17 116.6 21.3 240 72-369 5-253 (272)
46 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.9E-13 6.6E-18 122.6 15.5 212 234-456 44-269 (275)
47 2ho1_A Type 4 fimbrial biogene 99.5 3.2E-12 1.1E-16 113.0 22.2 195 202-398 37-237 (252)
48 2q7f_A YRRB protein; TPR, prot 99.5 3.9E-13 1.3E-17 118.1 16.0 196 234-462 24-222 (243)
49 2pl2_A Hypothetical conserved 99.5 7.2E-13 2.5E-17 114.3 16.8 193 200-397 3-212 (217)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.5E-12 5E-17 116.8 19.1 217 244-464 16-246 (275)
51 4a1s_A PINS, partner of inscut 99.5 1.2E-13 4E-18 131.9 12.5 262 173-463 50-373 (411)
52 2q7f_A YRRB protein; TPR, prot 99.5 7.8E-13 2.7E-17 116.2 16.4 155 308-463 27-189 (243)
53 2vq2_A PILW, putative fimbrial 99.5 5.3E-12 1.8E-16 109.2 20.9 196 233-462 8-211 (225)
54 3ro2_A PINS homolog, G-protein 99.5 3.5E-13 1.2E-17 124.5 13.9 260 174-462 8-332 (338)
55 3sf4_A G-protein-signaling mod 99.5 1.9E-13 6.4E-18 130.1 12.3 281 138-450 7-364 (406)
56 2h6f_A Protein farnesyltransfe 99.5 1.7E-12 5.8E-17 121.3 18.2 219 236-463 100-349 (382)
57 3vtx_A MAMA; tetratricopeptide 99.5 2.4E-12 8.2E-17 107.8 17.3 157 303-463 4-171 (184)
58 3sf4_A G-protein-signaling mod 99.5 2.7E-13 9.4E-18 129.0 13.0 228 235-462 49-336 (406)
59 2vq2_A PILW, putative fimbrial 99.5 5.1E-12 1.7E-16 109.4 19.9 195 203-398 9-210 (225)
60 2h6f_A Protein farnesyltransfe 99.5 2.5E-12 8.7E-17 120.1 18.6 233 173-445 99-365 (382)
61 1ouv_A Conserved hypothetical 99.5 1.2E-11 4.3E-16 110.7 22.3 214 175-398 10-250 (273)
62 3nf1_A KLC 1, kinesin light ch 99.5 3.9E-13 1.3E-17 122.8 12.6 227 235-461 29-306 (311)
63 4abn_A Tetratricopeptide repea 99.4 1.4E-12 5E-17 126.4 15.5 203 249-459 84-318 (474)
64 3ulq_A Response regulator aspa 99.4 1.6E-12 5.5E-17 122.8 15.2 223 239-462 109-368 (383)
65 4e6h_A MRNA 3'-END-processing 99.4 4.3E-10 1.5E-14 112.2 32.7 141 25-168 55-222 (679)
66 3ulq_A Response regulator aspa 99.4 1.7E-11 5.9E-16 115.7 21.1 287 81-398 23-367 (383)
67 4a1s_A PINS, partner of inscut 99.4 1.2E-12 4.1E-17 124.9 12.8 266 73-363 51-371 (411)
68 3ro2_A PINS homolog, G-protein 99.4 1.7E-12 5.9E-17 119.8 11.6 266 73-363 8-331 (338)
69 2ond_A Cleavage stimulation fa 99.4 1E-10 3.5E-15 106.7 22.6 242 188-440 33-304 (308)
70 4gyw_A UDP-N-acetylglucosamine 99.4 9.2E-12 3.1E-16 125.7 15.8 154 303-461 8-173 (723)
71 4e6h_A MRNA 3'-END-processing 99.4 2.3E-09 8E-14 106.9 32.4 394 67-464 63-572 (679)
72 3as5_A MAMA; tetratricopeptide 99.3 1.2E-10 4.2E-15 97.1 18.7 159 304-463 8-174 (186)
73 3vtx_A MAMA; tetratricopeptide 99.3 1.3E-10 4.6E-15 97.0 18.7 162 232-398 4-169 (184)
74 1hz4_A MALT regulatory protein 99.3 2.2E-09 7.4E-14 100.8 28.8 195 235-431 137-352 (373)
75 3q15_A PSP28, response regulat 99.3 1.2E-10 4.1E-15 109.7 19.7 220 240-461 108-364 (378)
76 2ond_A Cleavage stimulation fa 99.3 5.6E-10 1.9E-14 101.7 23.0 211 87-298 33-271 (308)
77 3q15_A PSP28, response regulat 99.3 3.1E-10 1.1E-14 106.8 21.6 161 235-398 184-364 (378)
78 4i17_A Hypothetical protein; T 99.3 1.1E-09 3.7E-14 95.0 21.8 201 232-443 6-224 (228)
79 3edt_B KLC 2, kinesin light ch 99.3 3.5E-11 1.2E-15 108.0 12.5 194 269-462 44-281 (283)
80 4abn_A Tetratricopeptide repea 99.2 7.9E-11 2.7E-15 114.2 14.0 220 86-331 84-319 (474)
81 3nf1_A KLC 1, kinesin light ch 99.2 2.3E-10 8E-15 104.2 15.1 226 171-398 27-306 (311)
82 4i17_A Hypothetical protein; T 99.2 2.2E-10 7.7E-15 99.4 14.1 191 266-464 5-211 (228)
83 3mv2_B Coatomer subunit epsilo 99.1 2.8E-09 9.6E-14 94.5 17.8 240 181-435 23-289 (310)
84 3as5_A MAMA; tetratricopeptide 99.1 3.2E-09 1.1E-13 88.3 17.6 157 204-398 10-172 (186)
85 1hz4_A MALT regulatory protein 99.1 1.4E-08 4.9E-13 95.2 23.8 258 205-463 17-323 (373)
86 1qqe_A Vesicular transport pro 99.1 1.7E-09 6E-14 97.6 16.6 123 337-461 119-268 (292)
87 4gyw_A UDP-N-acetylglucosamine 99.1 2.2E-09 7.5E-14 108.4 17.3 161 233-398 9-173 (723)
88 4ga2_A E3 SUMO-protein ligase 99.1 3.2E-10 1.1E-14 91.1 9.1 133 311-448 4-149 (150)
89 1qqe_A Vesicular transport pro 99.1 1.9E-09 6.6E-14 97.3 14.6 211 217-441 32-282 (292)
90 2yhc_A BAMD, UPF0169 lipoprote 99.1 3.1E-09 1.1E-13 91.9 14.5 184 268-465 4-216 (225)
91 2fo7_A Synthetic consensus TPR 99.0 4.7E-09 1.6E-13 82.1 13.9 123 337-463 3-133 (136)
92 3edt_B KLC 2, kinesin light ch 99.0 2.8E-09 9.7E-14 95.4 12.8 214 183-398 13-280 (283)
93 2r5s_A Uncharacterized protein 99.0 7.6E-09 2.6E-13 85.6 13.9 149 308-461 10-172 (176)
94 3qky_A Outer membrane assembly 99.0 8E-09 2.8E-13 91.6 14.5 184 267-464 14-226 (261)
95 3qky_A Outer membrane assembly 99.0 7.9E-09 2.7E-13 91.6 13.9 198 230-449 12-248 (261)
96 2pzi_A Probable serine/threoni 98.9 4E-09 1.4E-13 106.9 11.8 164 279-448 402-583 (681)
97 2vsy_A XCC0866; transferase, g 98.9 1.9E-08 6.6E-13 100.0 15.0 153 281-440 2-169 (568)
98 4ga2_A E3 SUMO-protein ligase 98.9 1.6E-09 5.5E-14 87.0 5.5 118 341-463 3-130 (150)
99 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.3E-07 4.4E-12 80.7 17.4 124 308-432 10-154 (213)
100 3qou_A Protein YBBN; thioredox 98.9 1.9E-08 6.4E-13 90.5 12.2 164 265-461 114-283 (287)
101 2pzi_A Probable serine/threoni 98.9 7E-09 2.4E-13 105.2 10.2 144 315-464 402-565 (681)
102 2r5s_A Uncharacterized protein 98.8 9.6E-08 3.3E-12 78.8 15.1 25 337-361 146-170 (176)
103 3gyz_A Chaperone protein IPGC; 98.8 3E-08 1E-12 79.1 11.3 92 370-464 36-135 (151)
104 4gco_A Protein STI-1; structur 98.8 3.7E-08 1.3E-12 76.2 11.5 102 336-442 14-124 (126)
105 3mv2_B Coatomer subunit epsilo 98.8 4.8E-07 1.6E-11 80.3 19.7 58 204-261 102-164 (310)
106 3qou_A Protein YBBN; thioredox 98.8 8E-08 2.7E-12 86.3 14.7 59 140-198 117-178 (287)
107 3u3w_A Transcriptional activat 98.8 3.3E-07 1.1E-11 82.6 18.8 152 310-461 81-265 (293)
108 2fo7_A Synthetic consensus TPR 98.8 1.3E-07 4.4E-12 73.7 14.1 128 236-398 4-131 (136)
109 3urz_A Uncharacterized protein 98.8 7E-08 2.4E-12 82.1 13.2 118 309-431 59-189 (208)
110 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.3E-07 7.8E-12 80.0 16.5 175 204-398 6-212 (225)
111 3rjv_A Putative SEL1 repeat pr 98.8 1.4E-07 4.9E-12 80.4 15.1 179 251-465 4-200 (212)
112 3urz_A Uncharacterized protein 98.8 1.4E-07 4.8E-12 80.2 14.9 131 239-374 60-194 (208)
113 2uy1_A Cleavage stimulation fa 98.8 6.9E-07 2.4E-11 86.5 21.3 365 52-461 7-412 (493)
114 2ifu_A Gamma-SNAP; membrane fu 98.8 7.6E-08 2.6E-12 87.5 13.7 146 306-454 78-253 (307)
115 4gco_A Protein STI-1; structur 98.7 6.1E-08 2.1E-12 74.9 9.6 96 366-464 8-112 (126)
116 1p5q_A FKBP52, FK506-binding p 98.7 5.7E-08 1.9E-12 89.4 10.7 121 336-461 148-293 (336)
117 1a17_A Serine/threonine protei 98.7 1.9E-07 6.4E-12 76.0 12.8 122 336-461 14-145 (166)
118 2vsy_A XCC0866; transferase, g 98.7 3.4E-07 1.2E-11 91.0 16.1 148 246-398 2-156 (568)
119 2vgx_A Chaperone SYCD; alterna 98.7 6.4E-08 2.2E-12 77.3 8.5 96 335-461 21-117 (148)
120 2uy1_A Cleavage stimulation fa 98.7 3.4E-06 1.2E-10 81.6 22.0 352 38-427 16-412 (493)
121 2c2l_A CHIP, carboxy terminus 98.7 7.1E-08 2.4E-12 86.3 9.1 186 268-462 4-199 (281)
122 3rjv_A Putative SEL1 repeat pr 98.6 1.8E-06 6E-11 73.6 17.2 168 221-398 5-196 (212)
123 3dra_A Protein farnesyltransfe 98.6 6.6E-06 2.3E-10 73.7 21.2 206 249-461 49-286 (306)
124 2ifu_A Gamma-SNAP; membrane fu 98.6 2.5E-07 8.7E-12 84.0 11.9 188 245-460 3-222 (307)
125 2lni_A Stress-induced-phosphop 98.6 4.5E-07 1.5E-11 70.5 11.8 110 334-448 15-133 (133)
126 2fbn_A 70 kDa peptidylprolyl i 98.6 4.9E-08 1.7E-12 82.4 6.3 146 314-464 14-188 (198)
127 3gw4_A Uncharacterized protein 98.6 5E-07 1.7E-11 76.2 12.5 158 279-461 3-175 (203)
128 2vyi_A SGTA protein; chaperone 98.6 5.7E-07 1.9E-11 69.5 11.9 111 335-449 12-130 (131)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.6 8.2E-07 2.8E-11 75.6 13.7 121 143-263 9-151 (213)
130 4f3v_A ESX-1 secretion system 98.6 1.1E-06 3.7E-11 76.9 14.4 192 245-440 18-248 (282)
131 2e2e_A Formate-dependent nitri 98.6 2.1E-07 7.3E-12 76.8 9.3 53 411-463 91-145 (177)
132 1na0_A Designed protein CTPR3; 98.6 9.3E-07 3.2E-11 67.6 12.4 107 336-446 10-124 (125)
133 2qfc_A PLCR protein; TPR, HTH, 98.5 2.5E-06 8.5E-11 76.8 16.4 161 238-398 80-265 (293)
134 2xcb_A PCRH, regulatory protei 98.5 7.5E-07 2.6E-11 70.4 10.5 96 335-461 18-114 (142)
135 3u3w_A Transcriptional activat 98.5 3.4E-06 1.2E-10 75.9 16.0 207 23-260 32-264 (293)
136 2hr2_A Hypothetical protein; a 98.5 1.2E-06 4.1E-11 69.2 10.9 102 337-462 13-131 (159)
137 3gyz_A Chaperone protein IPGC; 98.5 5.6E-07 1.9E-11 71.7 9.1 90 307-398 39-132 (151)
138 2qfc_A PLCR protein; TPR, HTH, 98.5 1.7E-06 5.7E-11 78.0 13.4 205 25-260 34-264 (293)
139 4f3v_A ESX-1 secretion system 98.5 3.8E-06 1.3E-10 73.5 15.1 123 176-298 107-238 (282)
140 3upv_A Heat shock protein STI1 98.5 8.9E-07 3E-11 68.3 9.9 96 336-462 5-101 (126)
141 2kck_A TPR repeat; tetratricop 98.5 2.6E-06 9E-11 63.6 12.1 102 334-465 5-109 (112)
142 2vgx_A Chaperone SYCD; alterna 98.4 1.5E-06 5E-11 69.3 10.7 94 303-398 20-117 (148)
143 1hxi_A PEX5, peroxisome target 98.4 5.6E-07 1.9E-11 68.9 7.8 95 338-463 20-115 (121)
144 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.1E-06 3.9E-11 84.4 11.6 122 336-462 269-415 (457)
145 2dba_A Smooth muscle cell asso 98.4 4.4E-06 1.5E-10 66.1 13.2 105 334-443 27-143 (148)
146 3upv_A Heat shock protein STI1 98.4 2.1E-06 7.1E-11 66.1 10.8 93 304-398 4-100 (126)
147 3sz7_A HSC70 cochaperone (SGT) 98.4 2.8E-06 9.7E-11 68.9 12.1 102 335-441 11-121 (164)
148 3dra_A Protein farnesyltransfe 98.4 1.5E-05 5.1E-10 71.4 17.4 35 334-369 257-291 (306)
149 1elw_A TPR1-domain of HOP; HOP 98.4 4.9E-06 1.7E-10 62.8 12.5 100 336-440 5-113 (118)
150 2xcb_A PCRH, regulatory protei 98.4 1.7E-06 5.9E-11 68.3 10.2 94 303-398 17-114 (142)
151 3gw4_A Uncharacterized protein 98.4 2.8E-06 9.6E-11 71.5 12.0 82 214-295 4-93 (203)
152 2c2l_A CHIP, carboxy terminus 98.4 1.5E-06 5.1E-11 77.7 10.6 189 203-398 5-198 (281)
153 3sz7_A HSC70 cochaperone (SGT) 98.4 1.6E-06 5.3E-11 70.5 9.9 93 369-464 10-110 (164)
154 3q49_B STIP1 homology and U bo 98.4 2.5E-06 8.7E-11 66.7 10.8 99 333-462 7-106 (137)
155 4gcn_A Protein STI-1; structur 98.4 1.4E-06 4.8E-11 67.3 8.8 102 336-462 9-112 (127)
156 1a17_A Serine/threonine protei 98.3 7E-06 2.4E-10 66.4 12.4 122 237-361 17-143 (166)
157 1elw_A TPR1-domain of HOP; HOP 98.3 4.7E-06 1.6E-10 62.8 10.4 95 370-464 4-103 (118)
158 2if4_A ATFKBP42; FKBP-like, al 98.3 1E-06 3.5E-11 81.1 7.8 122 338-464 182-330 (338)
159 4b4t_Q 26S proteasome regulato 98.3 1.2E-05 4E-10 76.8 15.3 192 240-460 11-243 (434)
160 2e2e_A Formate-dependent nitri 98.3 7.6E-06 2.6E-10 67.3 12.0 115 280-398 22-143 (177)
161 2lni_A Stress-induced-phosphop 98.3 7.6E-06 2.6E-10 63.3 11.3 116 68-185 14-132 (133)
162 1wao_1 Serine/threonine protei 98.3 1.6E-06 5.6E-11 83.7 8.6 111 343-458 14-135 (477)
163 4b4t_Q 26S proteasome regulato 98.3 1.4E-05 4.8E-10 76.3 14.8 148 112-259 11-201 (434)
164 4gcn_A Protein STI-1; structur 98.3 6.5E-06 2.2E-10 63.5 9.9 93 304-398 8-111 (127)
165 3q49_B STIP1 homology and U bo 98.2 7E-06 2.4E-10 64.1 10.3 95 302-398 7-105 (137)
166 3ro3_A PINS homolog, G-protein 98.2 4.6E-06 1.6E-10 67.1 9.2 134 305-461 10-157 (164)
167 1na0_A Designed protein CTPR3; 98.2 1.3E-05 4.4E-10 61.0 11.3 94 71-166 10-103 (125)
168 1hxi_A PEX5, peroxisome target 98.2 8.7E-06 3E-10 62.1 9.7 91 306-398 19-113 (121)
169 2vyi_A SGTA protein; chaperone 98.2 1.3E-05 4.5E-10 61.6 10.4 114 71-186 13-129 (131)
170 1p5q_A FKBP52, FK506-binding p 98.2 2.5E-05 8.4E-10 71.7 13.3 158 217-398 128-293 (336)
171 1ihg_A Cyclophilin 40; ppiase 98.2 8E-06 2.7E-10 75.9 10.1 116 337-455 225-363 (370)
172 2xev_A YBGF; tetratricopeptide 98.2 3.1E-05 1.1E-09 59.5 12.0 56 341-398 8-67 (129)
173 3rkv_A Putative peptidylprolyl 98.2 6.1E-06 2.1E-10 66.8 8.2 101 337-440 13-139 (162)
174 2xev_A YBGF; tetratricopeptide 98.1 1.9E-05 6.5E-10 60.8 10.7 91 373-463 5-106 (129)
175 2kck_A TPR repeat; tetratricop 98.1 3.1E-05 1E-09 57.6 11.3 94 304-398 6-105 (112)
176 2dba_A Smooth muscle cell asso 98.1 2.2E-05 7.7E-10 61.9 10.8 92 369-463 27-129 (148)
177 3rkv_A Putative peptidylprolyl 98.1 1.1E-05 3.7E-10 65.2 8.9 95 370-464 11-128 (162)
178 3q7a_A Farnesyltransferase alp 98.1 0.00038 1.3E-08 63.1 18.8 26 266-291 300-325 (349)
179 3q7a_A Farnesyltransferase alp 98.1 0.00028 9.5E-09 63.9 17.9 230 76-331 60-329 (349)
180 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 4.2E-10 61.8 8.0 63 335-398 4-66 (131)
181 3k9i_A BH0479 protein; putativ 98.0 2.3E-06 7.7E-11 65.0 3.4 86 347-461 2-89 (117)
182 1elr_A TPR2A-domain of HOP; HO 98.0 2.1E-05 7E-10 60.5 8.7 95 304-398 4-107 (131)
183 3k9i_A BH0479 protein; putativ 98.0 5E-06 1.7E-10 63.0 4.9 82 316-399 2-90 (117)
184 2fbn_A 70 kDa peptidylprolyl i 98.0 8E-06 2.7E-10 68.6 6.0 137 52-190 17-175 (198)
185 3ro3_A PINS homolog, G-protein 97.9 3.1E-05 1E-09 62.1 8.7 62 337-398 91-157 (164)
186 3dss_A Geranylgeranyl transfer 97.9 0.00094 3.2E-08 60.1 18.0 78 218-296 90-173 (331)
187 1wao_1 Serine/threonine protei 97.9 6.5E-05 2.2E-09 72.4 11.2 115 276-394 14-134 (477)
188 2l6j_A TPR repeat-containing p 97.9 6.4E-06 2.2E-10 61.5 2.9 94 335-459 4-104 (111)
189 3dss_A Geranylgeranyl transfer 97.9 0.0023 7.8E-08 57.6 19.9 140 320-463 126-305 (331)
190 1zu2_A Mitochondrial import re 97.9 1.5E-05 5.3E-10 62.7 5.0 98 346-464 13-122 (158)
191 3n71_A Histone lysine methyltr 97.8 0.00024 8.3E-09 68.1 13.0 125 314-462 319-464 (490)
192 2hr2_A Hypothetical protein; a 97.8 0.00012 4.1E-09 57.7 8.9 60 337-398 59-130 (159)
193 1dce_A Protein (RAB geranylger 97.8 0.00096 3.3E-08 65.6 17.2 184 249-451 45-244 (567)
194 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00035 1.2E-08 67.0 13.2 92 304-397 317-413 (457)
195 3ma5_A Tetratricopeptide repea 97.7 0.0001 3.4E-09 53.8 6.8 52 411-462 19-70 (100)
196 2kat_A Uncharacterized protein 97.6 0.00015 5.2E-09 54.4 7.7 44 353-398 3-47 (115)
197 2l6j_A TPR repeat-containing p 97.6 0.00012 4E-09 54.4 6.8 97 69-167 3-105 (111)
198 1na3_A Designed protein CTPR2; 97.6 0.0002 6.7E-09 50.9 7.6 82 335-447 9-91 (91)
199 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00031 1.1E-08 64.4 9.9 140 71-229 180-326 (338)
200 1ihg_A Cyclophilin 40; ppiase 97.5 0.0007 2.4E-08 62.8 11.8 86 304-391 273-362 (370)
201 1klx_A Cysteine rich protein B 97.5 0.00052 1.8E-08 53.4 9.2 109 349-465 9-129 (138)
202 2kc7_A BFR218_protein; tetratr 97.4 0.00022 7.4E-09 51.7 5.6 87 341-432 6-94 (99)
203 3n71_A Histone lysine methyltr 97.4 0.0012 4.2E-08 63.3 12.0 63 336-398 394-463 (490)
204 3qww_A SET and MYND domain-con 97.3 0.001 3.5E-08 62.7 9.6 91 347-461 310-410 (433)
205 2kc7_A BFR218_protein; tetratr 97.2 0.00044 1.5E-08 50.1 5.5 57 377-436 7-72 (99)
206 3mkq_A Coatomer beta'-subunit; 97.2 0.037 1.3E-06 57.2 21.7 167 148-360 607-774 (814)
207 1klx_A Cysteine rich protein B 97.2 0.0057 1.9E-07 47.4 11.9 110 247-365 9-127 (138)
208 3bee_A Putative YFRE protein; 97.2 0.00073 2.5E-08 48.2 5.9 51 415-465 25-75 (93)
209 1na3_A Designed protein CTPR2; 97.2 0.0029 1E-07 44.5 9.3 82 70-153 9-90 (91)
210 3qwp_A SET and MYND domain-con 97.2 0.0019 6.3E-08 61.0 10.3 96 342-461 294-399 (429)
211 3ma5_A Tetratricopeptide repea 97.1 0.002 6.7E-08 46.8 7.9 65 232-297 6-70 (100)
212 2kat_A Uncharacterized protein 97.1 0.0013 4.6E-08 49.0 7.0 64 232-296 18-81 (115)
213 3lvg_A Clathrin heavy chain 1; 97.1 0.0029 9.8E-08 58.7 9.9 386 36-454 53-533 (624)
214 1dce_A Protein (RAB geranylger 97.1 0.0096 3.3E-07 58.5 14.4 114 172-286 108-244 (567)
215 1zu2_A Mitochondrial import re 96.9 0.001 3.5E-08 52.3 4.5 99 317-435 15-127 (158)
216 3mkq_A Coatomer beta'-subunit; 96.6 0.12 4E-06 53.5 19.5 27 304-330 681-707 (814)
217 3lvg_A Clathrin heavy chain 1; 96.6 6.1E-05 2.1E-09 69.5 -5.0 254 53-324 39-324 (624)
218 3ly7_A Transcriptional activat 96.5 0.042 1.4E-06 49.8 13.1 73 333-410 275-347 (372)
219 4h7y_A Dual specificity protei 96.5 0.0096 3.3E-07 45.5 7.4 109 333-465 11-126 (161)
220 3ly7_A Transcriptional activat 96.5 0.12 4.1E-06 46.8 15.8 74 301-376 274-349 (372)
221 3u64_A Protein TP_0956; tetrat 96.4 0.014 4.9E-07 50.6 8.6 54 412-465 217-272 (301)
222 3qwp_A SET and MYND domain-con 96.1 0.015 5.3E-07 54.7 8.3 88 311-398 294-399 (429)
223 3qww_A SET and MYND domain-con 96.1 0.014 4.7E-07 55.0 7.8 63 336-398 341-410 (433)
224 1pc2_A Mitochondria fission pr 96.1 0.053 1.8E-06 42.1 9.7 84 351-437 14-109 (152)
225 1wy6_A Hypothetical protein ST 95.9 0.3 1E-05 36.6 12.3 137 316-465 19-157 (172)
226 3mkq_B Coatomer subunit alpha; 95.7 0.52 1.8E-05 37.5 14.3 101 213-331 16-116 (177)
227 3bee_A Putative YFRE protein; 95.7 0.079 2.7E-06 37.5 8.8 63 334-398 5-71 (93)
228 3mkq_B Coatomer subunit alpha; 95.7 0.29 1E-05 39.0 12.6 43 316-360 17-59 (177)
229 2v5f_A Prolyl 4-hydroxylase su 95.6 0.059 2E-06 39.1 8.1 63 336-398 6-74 (104)
230 3u64_A Protein TP_0956; tetrat 95.5 0.045 1.5E-06 47.5 7.8 77 351-432 179-273 (301)
231 2v5f_A Prolyl 4-hydroxylase su 95.5 0.08 2.7E-06 38.4 8.3 72 368-439 3-86 (104)
232 1nzn_A CGI-135 protein, fissio 94.6 0.36 1.2E-05 36.0 9.5 84 350-436 16-111 (126)
233 3txn_A 26S proteasome regulato 94.5 2.9 0.0001 38.4 21.0 218 238-464 104-345 (394)
234 1wy6_A Hypothetical protein ST 94.0 1.4 5E-05 33.0 16.2 140 243-402 17-156 (172)
235 1qsa_A Protein (soluble lytic 94.0 5.2 0.00018 39.4 25.3 72 176-248 77-151 (618)
236 1pc2_A Mitochondria fission pr 93.9 0.31 1.1E-05 37.8 8.2 30 338-369 74-103 (152)
237 4gns_B Protein CSD3, chitin bi 93.7 0.51 1.7E-05 47.4 11.7 50 411-460 349-398 (754)
238 3ltm_A Alpha-REP4; protein eng 93.6 2.6 8.8E-05 34.8 16.6 109 169-281 93-201 (211)
239 2ff4_A Probable regulatory pro 93.2 0.42 1.4E-05 44.2 9.6 124 334-470 111-247 (388)
240 4h7y_A Dual specificity protei 92.6 1.6 5.5E-05 33.5 10.1 97 67-165 10-119 (161)
241 2ff4_A Probable regulatory pro 92.1 1.9 6.5E-05 39.8 12.5 84 338-432 174-261 (388)
242 3ltm_A Alpha-REP4; protein eng 92.0 4.5 0.00015 33.3 18.9 123 169-296 62-184 (211)
243 3ltj_A Alpharep-4; protein eng 91.6 4.7 0.00016 32.8 17.9 49 199-247 118-166 (201)
244 4b4t_P 26S proteasome regulato 91.5 8.4 0.00029 36.2 16.4 180 247-426 30-245 (445)
245 2wpv_A GET4, UPF0363 protein Y 90.9 8 0.00027 34.1 17.6 125 48-184 43-178 (312)
246 3ffl_A Anaphase-promoting comp 90.8 1.8 6E-05 33.9 8.9 23 309-331 127-149 (167)
247 4fhn_B Nucleoporin NUP120; pro 90.6 2.6 8.7E-05 45.3 13.3 184 176-363 817-1049(1139)
248 4gns_B Protein CSD3, chitin bi 90.6 0.79 2.7E-05 46.0 8.7 63 333-397 611-682 (754)
249 2wpv_A GET4, UPF0363 protein Y 90.4 9 0.00031 33.8 22.1 183 178-398 20-216 (312)
250 3lpz_A GET4 (YOR164C homolog); 90.1 9.8 0.00034 33.9 19.0 128 47-186 44-182 (336)
251 3txn_A 26S proteasome regulato 90.1 10 0.00035 34.8 14.9 58 340-397 104-166 (394)
252 4b4t_P 26S proteasome regulato 89.2 15 0.0005 34.6 16.7 91 308-398 141-246 (445)
253 3ffl_A Anaphase-promoting comp 88.9 1.7 5.8E-05 34.1 7.5 121 336-461 21-150 (167)
254 4ady_A RPN2, 26S proteasome re 87.1 19 0.00066 37.1 15.8 47 243-291 534-583 (963)
255 2uwj_G Type III export protein 86.7 6.4 0.00022 27.6 9.5 86 18-110 22-107 (115)
256 4ady_A RPN2, 26S proteasome re 86.3 33 0.0011 35.4 23.6 38 58-98 221-258 (963)
257 1zbp_A Hypothetical protein VP 86.3 6.5 0.00022 33.6 10.1 115 344-462 6-129 (273)
258 2p58_C Putative type III secre 86.3 6.8 0.00023 27.5 9.0 86 18-110 23-108 (116)
259 1v54_E Cytochrome C oxidase po 86.1 7.1 0.00024 27.5 8.6 62 85-147 25-86 (109)
260 1nzn_A CGI-135 protein, fissio 85.7 3.4 0.00011 30.7 7.2 31 338-370 77-107 (126)
261 1v54_E Cytochrome C oxidase po 85.3 5 0.00017 28.3 7.3 50 350-399 25-74 (109)
262 3lpz_A GET4 (YOR164C homolog); 85.1 20 0.00069 31.9 23.8 183 179-398 20-215 (336)
263 2uwj_G Type III export protein 84.9 8 0.00027 27.1 9.5 88 282-375 20-107 (115)
264 4fhn_B Nucleoporin NUP120; pro 84.4 27 0.00094 37.4 16.5 148 204-352 814-988 (1139)
265 2p58_C Putative type III secre 84.2 8.7 0.0003 27.0 9.8 88 282-375 21-108 (116)
266 1y8m_A FIS1; mitochondria, unk 84.0 12 0.00041 28.4 11.5 66 367-435 36-113 (144)
267 3o48_A Mitochondria fission 1 83.1 7.3 0.00025 29.1 8.0 65 367-434 37-113 (134)
268 3ltj_A Alpharep-4; protein eng 82.2 18 0.00062 29.1 20.3 142 139-284 27-168 (201)
269 1qsa_A Protein (soluble lytic 81.4 43 0.0015 32.9 31.0 265 21-295 55-346 (618)
270 1y8m_A FIS1; mitochondria, unk 80.8 11 0.00037 28.6 8.3 51 352-405 59-109 (144)
271 3o48_A Mitochondria fission 1 80.2 7.2 0.00025 29.2 7.1 49 352-405 60-110 (134)
272 3esl_A Checkpoint serine/threo 80.0 16 0.00055 29.6 9.6 50 349-398 93-143 (202)
273 2y69_E Cytochrome C oxidase su 79.6 13 0.00045 27.8 8.1 63 85-148 68-130 (152)
274 4b4t_R RPN7, 26S proteasome re 78.5 43 0.0015 31.2 14.2 33 430-464 344-376 (429)
275 4b4t_R RPN7, 26S proteasome re 76.5 9.7 0.00033 35.6 8.7 95 305-399 132-237 (429)
276 1zbp_A Hypothetical protein VP 75.6 4.5 0.00015 34.6 5.5 48 412-459 10-57 (273)
277 2y69_E Cytochrome C oxidase su 71.5 30 0.001 26.0 9.1 50 350-399 68-117 (152)
278 3esl_A Checkpoint serine/threo 70.9 41 0.0014 27.3 10.9 52 317-368 92-148 (202)
279 1oyz_A Hypothetical protein YI 70.3 51 0.0017 28.2 21.9 122 168-296 139-262 (280)
280 1oyz_A Hypothetical protein YI 70.3 51 0.0017 28.2 20.7 120 199-329 139-259 (280)
281 4a1g_A Mitotic checkpoint seri 70.3 35 0.0012 26.3 9.2 45 354-398 84-129 (152)
282 2wvi_A Mitotic checkpoint seri 66.8 43 0.0015 26.2 8.8 45 354-398 79-124 (164)
283 1wdy_A 2-5A-dependent ribonucl 66.7 54 0.0018 27.8 11.0 17 211-227 154-170 (285)
284 2ion_A PDCD4, programmed cell 64.1 45 0.0015 25.6 8.6 65 308-372 13-82 (152)
285 3kea_A K1L; tropism, ANK repea 63.0 25 0.00086 30.4 8.0 32 255-291 210-241 (285)
286 2nsz_A Programmed cell death p 61.1 48 0.0016 24.6 9.7 65 308-372 11-80 (129)
287 1k1a_A B-cell lymphoma 3-encod 60.1 28 0.00096 28.8 7.6 49 15-66 19-70 (241)
288 3eu9_A Huntingtin-interacting 55.0 78 0.0027 25.8 9.6 14 52-65 19-32 (240)
289 2d2s_A Exocyst complex compone 53.7 57 0.002 27.3 8.1 86 75-163 23-114 (235)
290 4a1g_A Mitotic checkpoint seri 52.2 78 0.0027 24.3 10.4 46 323-368 84-134 (152)
291 1k1a_A B-cell lymphoma 3-encod 48.2 1.1E+02 0.0038 24.9 11.1 25 79-103 15-39 (241)
292 2wvi_A Mitotic checkpoint seri 45.2 1.1E+02 0.0037 23.9 10.8 38 333-370 94-131 (164)
293 4aez_C MAD3, mitotic spindle c 45.1 1.1E+02 0.0038 25.2 8.2 47 352-398 131-178 (223)
294 4b4t_S RPN3, 26S proteasome re 44.5 97 0.0033 29.5 8.8 27 140-166 231-257 (523)
295 3eu9_A Huntingtin-interacting 44.3 1.3E+02 0.0043 24.5 9.8 14 381-394 218-231 (240)
296 3kae_A CDC27, possible protein 44.0 1.2E+02 0.004 24.0 12.4 147 316-464 45-239 (242)
297 2nsz_A Programmed cell death p 43.4 51 0.0017 24.5 5.6 23 74-96 11-33 (129)
298 1n11_A Ankyrin; clathrin, BAND 42.5 1.3E+02 0.0046 27.5 9.9 293 90-394 27-332 (437)
299 2fu4_A Ferric uptake regulatio 41.1 75 0.0026 20.9 7.9 63 94-157 6-69 (83)
300 2fe3_A Peroxide operon regulat 40.7 71 0.0024 24.2 6.3 40 240-279 28-67 (145)
301 4b4t_S RPN3, 26S proteasome re 40.7 1.5E+02 0.005 28.3 9.4 58 107-164 233-294 (523)
302 4gq2_M Nucleoporin NUP120; bet 40.3 3.3E+02 0.011 28.4 13.1 27 372-398 899-925 (950)
303 2xig_A Ferric uptake regulatio 40.2 1.2E+02 0.0041 23.1 7.8 64 93-157 15-78 (150)
304 2ion_A PDCD4, programmed cell 38.2 65 0.0022 24.8 5.6 23 74-96 13-35 (152)
305 4gq2_M Nucleoporin NUP120; bet 38.1 3.4E+02 0.011 28.4 12.7 48 270-318 899-950 (950)
306 4aez_C MAD3, mitotic spindle c 38.1 1.7E+02 0.0058 24.1 8.6 33 336-368 151-183 (223)
307 3kea_A K1L; tropism, ANK repea 37.5 1.1E+02 0.0037 26.2 7.8 17 211-227 135-151 (285)
308 2r9g_A AAA ATPase, central reg 36.7 1.7E+02 0.0057 23.7 8.0 47 236-283 14-63 (204)
309 2fe3_A Peroxide operon regulat 35.9 93 0.0032 23.5 6.2 47 338-384 24-70 (145)
310 3eyy_A Putative iron uptake re 35.8 1.1E+02 0.0036 23.2 6.5 62 94-157 8-69 (145)
311 2xig_A Ferric uptake regulatio 35.5 1E+02 0.0035 23.5 6.4 39 240-278 33-71 (150)
312 3jxi_A Vanilloid receptor-rela 35.4 28 0.00095 29.4 3.5 56 77-132 9-73 (260)
313 4ets_A Ferric uptake regulatio 34.8 1.4E+02 0.0049 23.1 7.2 71 86-157 13-86 (162)
314 3uzd_A 14-3-3 protein gamma; s 33.9 2.1E+02 0.0073 24.0 9.8 54 238-291 9-63 (248)
315 2ko4_A Mediator of RNA polymer 33.6 65 0.0022 21.3 4.0 38 59-96 23-62 (81)
316 2ijq_A Hypothetical protein; s 33.5 1.5E+02 0.0052 22.9 7.0 52 82-133 44-103 (161)
317 3aji_A 26S proteasome non-ATPa 33.3 1.8E+02 0.006 23.5 8.3 17 211-227 145-161 (231)
318 2d2s_A Exocyst complex compone 33.3 1.1E+02 0.0039 25.5 6.8 22 239-260 24-45 (235)
319 3bge_A Predicted ATPase; struc 33.3 1.8E+02 0.0061 23.5 7.3 45 238-282 9-56 (201)
320 3ubw_A 14-3-3E, 14-3-3 protein 32.8 2.3E+02 0.0078 24.0 10.2 159 239-398 37-227 (261)
321 3l6a_A Eukaryotic translation 32.8 2.8E+02 0.0094 25.0 11.6 25 309-333 17-41 (364)
322 3mv2_A Coatomer subunit alpha; 32.7 2.5E+02 0.0087 24.7 8.9 122 314-463 124-257 (325)
323 3aji_A 26S proteasome non-ATPa 32.6 2E+02 0.0067 23.2 10.2 11 53-63 17-27 (231)
324 1wgl_A TOLL-interacting protei 32.4 58 0.002 20.2 3.6 23 82-104 35-57 (59)
325 2w57_A Ferric uptake regulatio 31.6 1.7E+02 0.0058 22.2 8.0 64 93-157 5-69 (150)
326 3twr_A Tankyrase-2; ankyrin re 31.0 1.7E+02 0.0057 22.1 7.3 104 52-165 18-130 (165)
327 1bd8_A P19INK4D CDK4/6 inhibit 30.7 1.6E+02 0.0053 21.9 7.0 13 52-64 12-24 (156)
328 1mzb_A Ferric uptake regulatio 30.6 1.6E+02 0.0056 21.8 7.5 63 94-157 7-70 (136)
329 1bpo_A Protein (clathrin); cla 30.5 3.4E+02 0.012 25.4 12.2 111 53-165 343-454 (494)
330 4ets_A Ferric uptake regulatio 30.2 81 0.0028 24.5 5.1 68 250-319 14-84 (162)
331 2etb_A Transient receptor pote 28.7 1.6E+02 0.0055 24.3 7.4 56 77-133 6-71 (256)
332 3bu8_A Telomeric repeat-bindin 28.3 2.5E+02 0.0084 23.0 10.6 97 351-460 88-199 (235)
333 3ygs_P Procaspase 9; apoptosis 27.6 76 0.0026 22.1 4.1 38 318-355 51-88 (97)
334 3eiq_C Programmed cell death p 27.5 3.4E+02 0.012 24.4 19.5 64 308-371 221-289 (358)
335 2o03_A Probable zinc uptake re 27.1 98 0.0034 22.8 4.9 47 238-284 15-61 (131)
336 3eyy_A Putative iron uptake re 26.9 1.2E+02 0.004 23.0 5.4 34 249-282 33-66 (145)
337 3jxi_A Vanilloid receptor-rela 26.5 1.3E+02 0.0045 25.0 6.4 17 210-226 145-161 (260)
338 1mzb_A Ferric uptake regulatio 25.5 1.9E+02 0.0065 21.4 6.3 27 249-275 34-60 (136)
339 1ya0_A SMG-7 transcript varian 25.1 1.1E+02 0.0038 29.0 5.9 48 415-462 168-215 (497)
340 3mwm_A ZUR, putative metal upt 24.9 1.4E+02 0.0049 22.3 5.5 49 109-157 17-65 (139)
341 1bpo_A Protein (clathrin); cla 24.7 3.1E+02 0.011 25.7 8.4 99 23-124 347-448 (494)
342 3mwm_A ZUR, putative metal upt 24.1 91 0.0031 23.4 4.3 46 238-283 18-63 (139)
343 3ygs_P Procaspase 9; apoptosis 24.0 88 0.003 21.7 3.8 37 155-191 52-88 (97)
344 3c1d_A Protein ORAA, regulator 24.0 2.1E+02 0.007 22.0 6.4 53 350-405 45-97 (159)
345 2qx5_A Nucleoporin NIC96; mRNA 23.9 5.3E+02 0.018 25.5 15.7 85 312-396 451-564 (661)
346 3qye_A TBC1 domain family memb 23.1 3.8E+02 0.013 23.5 9.5 129 85-217 164-309 (331)
347 1wdy_A 2-5A-dependent ribonucl 22.9 3.2E+02 0.011 22.6 14.4 81 313-394 154-240 (285)
348 2o03_A Probable zinc uptake re 22.8 1.5E+02 0.0053 21.7 5.3 46 111-156 16-61 (131)
349 2qx5_A Nucleoporin NIC96; mRNA 22.8 5.6E+02 0.019 25.3 15.9 28 438-468 541-570 (661)
350 1oai_A Nuclear RNA export fact 22.5 94 0.0032 19.3 3.3 21 447-467 34-54 (59)
351 2etb_A Transient receptor pote 21.5 1.2E+02 0.004 25.2 5.1 53 112-165 6-68 (256)
352 2w57_A Ferric uptake regulatio 21.3 1.6E+02 0.0054 22.4 5.2 59 259-319 8-67 (150)
353 2br9_A 14-3-3E, 14-3-3 protein 21.2 3.6E+02 0.012 22.4 10.1 50 414-463 145-203 (234)
354 2crb_A Nuclear receptor bindin 20.8 1.3E+02 0.0043 20.7 3.8 25 435-459 17-41 (97)
355 2ijq_A Hypothetical protein; s 20.7 3E+02 0.01 21.3 8.5 53 347-399 44-104 (161)
356 2f6m_A Suppressor protein STP2 20.6 1.1E+02 0.0037 19.5 3.3 44 73-117 5-48 (65)
357 3ljn_A Hypothetical protein; a 20.5 4.3E+02 0.015 23.1 10.2 79 312-395 178-266 (364)
358 3qil_A Clathrin heavy chain 1; 20.2 91 0.0031 22.8 3.2 53 107-162 34-86 (125)
359 3iqu_A 14-3-3 protein sigma; s 20.1 3.8E+02 0.013 22.3 10.4 170 228-398 3-204 (236)
360 3eiq_C Programmed cell death p 20.0 4.8E+02 0.016 23.4 14.5 65 205-269 220-289 (358)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-37 Score=313.52 Aligned_cols=423 Identities=9% Similarity=-0.035 Sum_probs=355.2
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV 111 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 111 (498)
.++...++.++. .+.+ .|++++|..+|+++. .|+..++..++..|.+.|++++|..+|+.+.. .+++..+++.+
T Consensus 81 ~~~~~~~~~~~~-~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRH-DALM-QQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHH-HHHH-TTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHH-ccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHH
Confidence 467778888888 7888 888888888888876 67778888888888888888888888888754 36778888888
Q ss_pred HHHhhcccchhhHHHHHHHHHHh---------------CCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCC---cch
Q 041942 112 LKACTRLLYRNMGFCVHGKIVKY---------------GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD---VVA 173 (498)
Q Consensus 112 i~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~ 173 (498)
+.++.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.+ ...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 88888888888888888853221 223467888888888888888888888888765422 222
Q ss_pred HH--------------------------------------HHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHH
Q 041942 174 WS--------------------------------------SLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYA 213 (498)
Q Consensus 174 ~~--------------------------------------~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~ 213 (498)
+. .++..|.+.|++++|.++|+++. +++..+|..++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 22 22455667899999999999998 488899999999999
Q ss_pred hcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHH
Q 041942 214 KQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290 (498)
Q Consensus 214 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 290 (498)
+.|++++|.++|+++.+ .+..++..++.+|.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999863 467889999999999999999999999998654 55788999999999999999999999
Q ss_pred HHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 041942 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367 (498)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 367 (498)
|++..... +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +
T Consensus 396 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 396 FSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 96665533 34577889999999999999999999988753 478899999999999999999999999999853 3
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc---CCCCC--hhH-------HHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY---NIEPN--IRH-------YGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 368 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~-------y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
.+..+|..++..|.+.|++++|.++++++.+.. +..|+ ... |.+.|++++|...++++++.+|+++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 468899999999999999999999999998721 66787 333 349999999999999999999999999
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
|..++.+|.+.|++++|.+.++++.+...
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999987543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-37 Score=314.33 Aligned_cols=404 Identities=11% Similarity=0.048 Sum_probs=284.3
Q ss_pred CCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHH
Q 041942 52 PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 131 (498)
.|.+..+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 56667777777777777778888888888888888888888888874 4567777778888888888888888888877
Q ss_pred HHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC-------------------CcchHHHHHHHHHhcCChHHHHH
Q 041942 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM-------------------DVVAWSSLTAGYARRGELSMARS 192 (498)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~A~~ 192 (498)
... +++..+++.++.+|.+.|++++|.++|+++.+. +..+|+.++.+|.+.|++++|+.
T Consensus 144 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 144 DLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 543 567778888888888888888888888754433 36678888888888888888888
Q ss_pred HHhcCC--CCC-cchHHHH--------------------------------------HHHHHhcCChHHHHHHHhhCCC-
Q 041942 193 LFDEMP--VRD-LVSWNVM--------------------------------------ITGYAKQGEMEKANELFNEVPK- 230 (498)
Q Consensus 193 ~~~~~~--~~~-~~~~~~l--------------------------------------~~~~~~~~~~~~A~~~~~~~~~- 230 (498)
+|+++. .|+ ...+..+ +..|.+.|++++|.++|+++.+
T Consensus 222 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 888776 232 2222222 3445567778888888888776
Q ss_pred -CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHH
Q 041942 231 -RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309 (498)
Q Consensus 231 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (498)
++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++++... .+.+..++..
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 378 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLA 378 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHH
Confidence 677788888888888888888888888887654 336667778888888888888888888555432 2345677777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCH
Q 041942 310 LIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 386 (498)
++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 8888888888888888887764 2356778888888888888888888888887743 33577778888888888888
Q ss_pred HHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHcc------CCCC-CchHHHHHHHHHhCCCchHHHH
Q 041942 387 EEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNM------RKDE-SGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
++|.++|+++.+..+..|. ...|.+.|++++|...|+++++. +|++ ..+|..++.+|.+.|++++|++
T Consensus 458 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 458 LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888888773221111 33444778888888888888776 3433 4578888888888888888888
Q ss_pred HHHHhhhCC
Q 041942 455 VRKLMDDSD 463 (498)
Q Consensus 455 ~~~~m~~~~ 463 (498)
.++++.+.+
T Consensus 538 ~~~~~~~~~ 546 (597)
T 2xpi_A 538 ALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 888877654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3e-27 Score=224.86 Aligned_cols=362 Identities=12% Similarity=0.079 Sum_probs=248.8
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChh
Q 041942 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN 157 (498)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (498)
..+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 34556677777777776665532 2234445555555666677777777776666653 445666677777777777777
Q ss_pred HHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CC-CcchHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 041942 158 TASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP--VR-DLVSWNVMITGYAKQGEMEKANELFNEVPK- 230 (498)
Q Consensus 158 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 230 (498)
+|...|+++.. .+..+|..+..++.+.|++++|...|+++. .| +...+..+...+...|++++|.+.|+++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 77777665432 233456667777777777777777776665 33 344566666777777777777777776653
Q ss_pred --CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHH
Q 041942 231 --RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308 (498)
Q Consensus 231 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (498)
.+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+... +.+..++.
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 241 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHG 241 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHH
Confidence 345677777888888888888888888877654 3355677777777888888888888875555443 23456667
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
.+...|.+.|++++|...|+++.+ | +..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCC
Confidence 777788888888888888776652 2 46677888888888888888888888887742 3456777778888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 386 VEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
+++|.+.++++.+ ..|+ ...|.+.|++++|...|+++++++|+++.+|..++.++...|+
T Consensus 321 ~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 321 IEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 8888888888766 4454 3334477788888888888888888888888888887776653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.3e-25 Score=211.90 Aligned_cols=363 Identities=13% Similarity=0.087 Sum_probs=217.8
Q ss_pred HHHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCCh
Q 041942 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNP 86 (498)
Q Consensus 10 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~ 86 (498)
..+...|+++.|.+.+..+.+. .|+......++...+.. .|++++|...++... +.+..+|..+...+.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~-~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3444556666666666665554 34444444444435555 677777777666554 44556677777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccC
Q 041942 87 LDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166 (498)
Q Consensus 87 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (498)
++|++.|+++.+.. +.+..+|..+..++.+.|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777776532 2234456667777777777777777777776654 234455666666666677777777766654
Q ss_pred CC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHH
Q 041942 167 AK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWN 237 (498)
Q Consensus 167 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~ 237 (498)
.. .+..+|..+...+.+.|++++|...|+++. +.+...|..+...+...|++++|...|++..+ .+..++.
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 32 234556666666667777777777666665 33345566666666666666666666665542 2445666
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhc
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (498)
.+...|...|++++|...|+++.+.. +.+..++..+...+.+.|++++|...+++.+... +.+..++..+...+.+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHc
Confidence 66666666666666666666666543 2244556666666666666666666664444432 23445555666666666
Q ss_pred CCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh
Q 041942 318 GSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSH 382 (498)
Q Consensus 318 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 382 (498)
|++++|...++++.+ | +..++..+..+|.+.|++++|...|+++.+ +.|+ ...+..+...+..
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHH
Confidence 666666666665543 2 345566666666666666666666666665 3343 4444444444433
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.6e-27 Score=228.34 Aligned_cols=206 Identities=14% Similarity=0.137 Sum_probs=152.2
Q ss_pred HHHHHHHHHHhCCCCCCHh-hHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccC
Q 041942 88 DAVFLYTQMEKCSIKPNKF-TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166 (498)
Q Consensus 88 ~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (498)
.+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3455556666666655443 57778888888888888888888888888888888888888888776653321
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCChhhHHH
Q 041942 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVP----KRDVVSWNA 238 (498)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ 238 (498)
.+.+..+.|.++|++|. .||..||++||.+|++.|++++|.++|++|. .||..+|+.
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12344566777777776 6788888888888888888888888888775 478888888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (498)
+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++ +.|+..+..|+..+|+.++..|..
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll-~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTL-QRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHH-HHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888 777788888888888888888765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.6e-26 Score=223.81 Aligned_cols=175 Identities=15% Similarity=0.148 Sum_probs=149.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------chHHHHHHHHHHHhhcCCcch
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD---------LEVGKKVHCTLLDMTSGVAKV 304 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 304 (498)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++| +.|...|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf-~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF-KQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH-HHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHH-HHHHHhCCCCCH
Confidence 35777888888888888888888888888888888888888888876654 57788888 666778888888
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041942 305 LHGNALIDMYAKCGSIERAIEVFLGMR----DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380 (498)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 380 (498)
.+|++||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 888888888888888888888888886 4788888888888888888888888888888888888888888888888
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~ 410 (498)
++.|++++|.+++++|++ .|..|+..+|.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~ 214 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRD-LVRQVSKSTFD 214 (501)
T ss_dssp HHTTCHHHHHHHHHHHHH-HTSSBCHHHHH
T ss_pred hhCCCHHHHHHHHHHHHH-hCCCcCHHHHH
Confidence 888888888888888888 78888877776
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.1e-23 Score=207.14 Aligned_cols=414 Identities=10% Similarity=-0.010 Sum_probs=296.2
Q ss_pred HHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 041942 38 SALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114 (498)
Q Consensus 38 ~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 114 (498)
..+..+-. .+.+ .|++++|.+.|+.+. +.+..+|..+...+.+.|++++|++.|+++.+.+ +.+...+..+..+
T Consensus 26 ~~~~~~g~-~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGN-HFFT-AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHH-HHHH-TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHH-hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 33444444 5555 677777777777765 3456667777777777777777777777776643 3355666667777
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC------CcchHHHHHHHHHhcCChH
Q 041942 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM------DVVAWSSLTAGYARRGELS 188 (498)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~ 188 (498)
+...|++++|...|+ .... .|+ .....+..+...+....|...++..... ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 777777777777775 3222 122 1122233444455556666666554331 1122234445566666777
Q ss_pred HHHHHHhcCCCCCcc---hHHHHHHHHHh--------cCChHHHHHHHhhCCC--CC--------hhhHHHHHHHHHhCC
Q 041942 189 MARSLFDEMPVRDLV---SWNVMITGYAK--------QGEMEKANELFNEVPK--RD--------VVSWNAMISGYVLCG 247 (498)
Q Consensus 189 ~A~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~g 247 (498)
.+...+......+.. ....+...+.. .|++++|..+|+++.+ |+ ..++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 777666666533332 33333333222 2478999999998875 32 225677778889999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 041942 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (498)
++++|...+++..+. .|+...+..+...+...|++++|...+++.+...+ .+..++..+...+...|++++|...|
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP--EYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999976 45688888999999999999999999977666543 45667888999999999999999999
Q ss_pred hcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC
Q 041942 328 LGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404 (498)
Q Consensus 328 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 404 (498)
+++.+ .+...|..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..+-.+
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 88763 357789999999999999999999999999843 33467888899999999999999999999887322222
Q ss_pred C-----------hhHHHhh----------CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 405 N-----------IRHYGVH----------GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 405 ~-----------~~~y~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
. ...|... |++++|...++++++.+|+++.++..++.+|...|++++|.+.|++..+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2 1344466 999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 041942 464 I 464 (498)
Q Consensus 464 ~ 464 (498)
.
T Consensus 493 ~ 493 (537)
T 3fp2_A 493 R 493 (537)
T ss_dssp -
T ss_pred C
Confidence 4
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.4e-23 Score=205.49 Aligned_cols=410 Identities=10% Similarity=-0.049 Sum_probs=270.6
Q ss_pred hhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhH
Q 041942 47 GSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 124 (498)
.+.+ .|++++|.+.|+.+. .|+..+|..+...+.+.|++++|++.|+++.+.+ +.+...|..+..++...|++++|
T Consensus 15 ~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 15 QFFR-NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHH-TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH-hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444 666666666666665 4566666666666666666666666666666543 33445666666666666666666
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC----CCcchHHHH---HHHHHhcCChHHHHHHHhcC
Q 041942 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK----MDVVAWSSL---TAGYARRGELSMARSLFDEM 197 (498)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~ 197 (498)
...|+.+.+.+ +++......++..+........+.+.+..+.. ++...+... ............+...+...
T Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 66666666654 23333333344433333333333333311110 000000000 00000011111111122222
Q ss_pred C----------CCCcchHHHHHHHHHh---cCChHHHHHHHhhCCC----------------C-ChhhHHHHHHHHHhCC
Q 041942 198 P----------VRDLVSWNVMITGYAK---QGEMEKANELFNEVPK----------------R-DVVSWNAMISGYVLCG 247 (498)
Q Consensus 198 ~----------~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~~~g 247 (498)
. +.+...+......+.. .|++++|...|+++.+ | +..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 1 1123344444444444 7889999888877644 1 2456778888899999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 041942 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (498)
++++|...++++.+.. |+...+..+...+...|++++|...+++.+... +.+...+..+...+...|++++|...|
T Consensus 252 ~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999988764 337788888889999999999999996665543 234567778888999999999999999
Q ss_pred hcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC
Q 041942 328 LGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404 (498)
Q Consensus 328 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 404 (498)
+++. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+-.+
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 8764 2366788889999999999999999999988742 23467888888999999999999999999877333333
Q ss_pred C-----------hhHHHh---hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 405 N-----------IRHYGV---HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 405 ~-----------~~~y~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+ ...|.. .|++++|...++++++.+|+++.++..++.+|...|++++|...++++.+...
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 2 223336 89999999999999999999999999999999999999999999999887554
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.7e-23 Score=205.13 Aligned_cols=418 Identities=8% Similarity=-0.042 Sum_probs=292.3
Q ss_pred HHHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCCh
Q 041942 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNP 86 (498)
Q Consensus 10 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~ 86 (498)
..+...|+.+.|...+..+.+.. |++.++..+.. .+.. .|++++|.+.|+.+. +.+..+|..+..++.+.|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~-~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSA-CYVS-VGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHH-HHHH-HTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHH-HHHH-HhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 34456688999999999999986 68888888888 8888 999999999999886 45567899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHH---hcCChhHHHHhh
Q 041942 87 LDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA---NCGDLNTASVLF 163 (498)
Q Consensus 87 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~ 163 (498)
++|+..|+++.+.+ +++......++..+........+.+.+..+...+..|+......-..... .......+...+
T Consensus 90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 99999999999875 45556666666666555555555555544443332222211111100000 111111111111
Q ss_pred ccCC---------CC-CcchHHHHHHHHHh---cCChHHHHHHHhcCCC----------------C-CcchHHHHHHHHH
Q 041942 164 DGDA---------KM-DVVAWSSLTAGYAR---RGELSMARSLFDEMPV----------------R-DLVSWNVMITGYA 213 (498)
Q Consensus 164 ~~~~---------~~-~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~ 213 (498)
.... .+ +...+......+.. .|++++|...|+++.. | +..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 1111 11 23334444444444 7888888888877643 1 2356777788888
Q ss_pred hcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 214 KQGEMEKANELFNEVPK--RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 214 ~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
..|++++|...|+++.+ |+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88999999888887753 446778888888888899999999998888664 345667788888888889999999988
Q ss_pred HHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 041942 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368 (498)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 368 (498)
++.+...+ .+...+..+...+...|++++|...++++.+ .+..++..+...|...|++++|...++++.+. .|
T Consensus 328 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~ 403 (514)
T 2gw1_A 328 DKAKELDP--ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--EN 403 (514)
T ss_dssp HHHHHTCS--SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH
T ss_pred HHHHHhCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hh
Confidence 66655432 3456677788888888999999988887653 35678888888899999999999999888763 23
Q ss_pred C-------HHHHHHHHHHHhh---cCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCC
Q 041942 369 T-------EITFVGVLVACSH---AGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRK 430 (498)
Q Consensus 369 ~-------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~ 430 (498)
+ ...+..+...+.. .|++++|...++++.+ ..|+ ...|...|++++|...++++++++|
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK---LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 2 2377888888888 8999999999998877 3444 3445588999999999999999999
Q ss_pred CCCchHHHHH
Q 041942 431 DESGDYVLLS 440 (498)
Q Consensus 431 ~~~~~~~~l~ 440 (498)
+++..+..+.
T Consensus 481 ~~~~~~~~~~ 490 (514)
T 2gw1_A 481 TMEEKLQAIT 490 (514)
T ss_dssp SHHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 8887777663
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2e-22 Score=195.52 Aligned_cols=362 Identities=13% Similarity=0.058 Sum_probs=245.7
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++...|+++.|...++++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345677788888888888888888888887642 4467778888888888888888888888888775 34577788888
Q ss_pred HHHHhcCChhHHHHhhccCCCCCc------chHHHH------------HHHHHhcCChHHHHHHHhcCC---CCCcchHH
Q 041942 148 YFHANCGDLNTASVLFDGDAKMDV------VAWSSL------------TAGYARRGELSMARSLFDEMP---VRDLVSWN 206 (498)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l------------~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 206 (498)
.+|...|++++|.+.|+.+...++ ..+..+ ...+.+.|++++|+..|+++. +.+...+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 888888888888888876654322 444444 344788888888888888876 55667788
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH---------
Q 041942 207 VMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL--------- 274 (498)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------- 274 (498)
.+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|...|+++.... +.+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHH
Confidence 888888888888888888888763 467788888888888888888888888887653 2233333333
Q ss_pred ---HHHHhccCCchHHHHHHHHHHHhhcCCcc--hhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHH
Q 041942 275 ---LTACADLGDLEVGKKVHCTLLDMTSGVAK--VLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLA 346 (498)
Q Consensus 275 ---i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 346 (498)
...+...|++++|...|++.+...+..+. ...+..+..++.+.|++++|...++++. ..+..+|..+..+|.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 66777778888888887665554332222 3356667777777777777777777654 235677777777777
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhh-----CChHHHHH
Q 041942 347 FHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH-----GDVELGRL 420 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~-----g~~~~a~~ 420 (498)
..|++++|...++++.+ +.|+ ...+..+..+....++ ... ...|... .+.+++.+
T Consensus 341 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~----------~~~-------~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQ----------SQK-------RDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp HTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHH----------HHS-------CCSGGGSCSSTTCCTTHHHH
T ss_pred HhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhc----------ccc-------hhHHHHhCCCccCCHHHHHH
Confidence 77777777777777777 4554 3333333322211111 000 0112222 25667777
Q ss_pred HHHH-HHccCCCCCc----------hHHHHHHHHHhCCCchH
Q 041942 421 ANKR-LLNMRKDESG----------DYVLLSNIYASRGEWNR 451 (498)
Q Consensus 421 ~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~ 451 (498)
.|++ +++..|++.. .+..+..+|...|+.++
T Consensus 402 ~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 402 AYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 7776 6666666432 34455555555555544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=4.1e-22 Score=193.28 Aligned_cols=343 Identities=10% Similarity=-0.020 Sum_probs=207.4
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCC
Q 041942 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167 (498)
Q Consensus 88 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 167 (498)
.+...+....... +.+...+..+...+.+.|+++.|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444432 3456677777777777888888888888777653 4456677777777777777777777776544
Q ss_pred C---CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CC-Cc---chHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHH
Q 041942 168 K---MDVVAWSSLTAGYARRGELSMARSLFDEMP--VR-DL---VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238 (498)
Q Consensus 168 ~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 238 (498)
+ .+...+..+..++.+.|++++|...|+++. .| +. ..+..++..+... .+..
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~ 148 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRS 148 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHH
Confidence 3 344566666677777777777777776665 22 22 3444333321100 1122
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (498)
+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...|++.+...+ .+...+..+...|...|
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN--DNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC--SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcC
Confidence 2334555666666666666665543 33455566666666666666666666644444332 33455556666666666
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHH------------HHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHH
Q 041942 319 SIERAIEVFLGMRD--R-DVSTWSTL------------IGGLAFHGFAEESIAMFREMQRLKVRPT-----EITFVGVLV 378 (498)
Q Consensus 319 ~~~~A~~~~~~~~~--~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~ 378 (498)
++++|...|+++.+ | +...+..+ +..+...|++++|..+|+++.+ +.|+ ...+..+..
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH
Confidence 66666666665542 2 23333333 6777777888888888888777 3454 335666777
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHH--------
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNI-------- 442 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-------- 442 (498)
.+.+.|++++|...++++.+ ..|+ ...|...|++++|...++++++++|+++.++..++.+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 77788888888888887766 2443 3334477888888888888888888888888887733
Q ss_pred ----HHhCC-----CchHHHHHHHHh
Q 041942 443 ----YASRG-----EWNRVEKVRKLM 459 (498)
Q Consensus 443 ----~~~~g-----~~~~A~~~~~~m 459 (498)
|...| +.+++.+.|+++
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHH
Confidence 44445 556777777763
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=7.6e-21 Score=188.72 Aligned_cols=415 Identities=9% Similarity=-0.017 Sum_probs=305.1
Q ss_pred HHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChH
Q 041942 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPL 87 (498)
Q Consensus 11 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~ 87 (498)
.+...|+.+.|...+..+.+.. +.++.++..+.. .+.. .|++++|.+.|+.+. +.+..+|..+...+...|+++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~-~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISA-CYIS-TGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHH-HHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHH-HHHH-cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHH
Confidence 4446678899999999998875 345666666666 8888 999999999999986 556788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCC--CCChHHHHHHHHHHHhcCChhHHHHhhcc
Q 041942 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF--EFNRFVRNSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 88 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
+|+..|+.+.. .|+.. ...+..+...+....+...++.+..... .+........+..+....+.+.+...+..
T Consensus 111 ~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 111 DAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred HHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 99999974432 33322 2223445556667788888888865310 11111123345556677888888888887
Q ss_pred CCCCCcc---hHHHHHHHHHhc--------CChHHHHHHHhcCC--CCC-c-------chHHHHHHHHHhcCChHHHHHH
Q 041942 166 DAKMDVV---AWSSLTAGYARR--------GELSMARSLFDEMP--VRD-L-------VSWNVMITGYAKQGEMEKANEL 224 (498)
Q Consensus 166 ~~~~~~~---~~~~l~~~~~~~--------~~~~~A~~~~~~~~--~~~-~-------~~~~~l~~~~~~~~~~~~A~~~ 224 (498)
....+.. ....+...+... |++++|..+++++. .|+ . .++..+...+...|++++|...
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 7765544 333333333322 47899999998887 333 2 2466677888899999999999
Q ss_pred HhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc
Q 041942 225 FNEVPK--RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302 (498)
Q Consensus 225 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (498)
|+++.+ |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++.+...+ .
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~ 342 (537)
T 3fp2_A 266 LQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--E 342 (537)
T ss_dssp HHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--C
Confidence 998863 667788889999999999999999999998764 44678889999999999999999999977666543 3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CCCCHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-----VRPTEITFV 374 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~ 374 (498)
+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. .......+.
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 456778899999999999999999987763 457789999999999999999999999987632 111223355
Q ss_pred HHHHHHhhc----------CCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchH
Q 041942 375 GVLVACSHA----------GKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDY 436 (498)
Q Consensus 375 ~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~ 436 (498)
.....+... |++++|...++++.+ ..|+ ...|...|++++|...|++++++.|.+....
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACE---LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 556677777 999999999999988 3454 4445599999999999999999999887665
Q ss_pred HHH
Q 041942 437 VLL 439 (498)
Q Consensus 437 ~~l 439 (498)
..+
T Consensus 500 ~~~ 502 (537)
T 3fp2_A 500 QAT 502 (537)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=4.8e-19 Score=165.93 Aligned_cols=284 Identities=12% Similarity=0.060 Sum_probs=148.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCh
Q 041942 176 SLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMN 249 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 249 (498)
.+...+...|++++|+..|+++. +.+...+..+..++...|++++|...|+++.+ .+...+..+...+...|++
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCh
Confidence 33344444444444444444433 22233444444444444444444444444331 2334444445555555555
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHH
Q 041942 250 KQALEMFEEMRSVGER--PDDVTMLSL------------LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315 (498)
Q Consensus 250 ~~a~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (498)
++|...+++..+.... .+...+..+ ...+...|++++|...+++.....+ .+...+..+...+.
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV--WDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHH
Confidence 5555555555433210 112222222 3455566666666666644444332 23444555666666
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHH------------HHHHH
Q 041942 316 KCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFV------------GVLVA 379 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~------------~l~~~ 379 (498)
..|++++|...++++.+ .+..++..+...+...|++++|...++++.+. .|+ ...+. .+...
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~ 243 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEE 243 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655432 24556666666666666666666666666652 233 22222 12444
Q ss_pred HhhcCCHHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCch
Q 041942 380 CSHAGKVEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (498)
+.+.|++++|...++++.+..+-.|. ...|...|++++|...++++++.+|+++.++..++.+|...|+++
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 66666666776666666652111111 123336667777777777777777777777777777777777777
Q ss_pred HHHHHHHHhhhCC
Q 041942 451 RVEKVRKLMDDSD 463 (498)
Q Consensus 451 ~A~~~~~~m~~~~ 463 (498)
+|.+.|+++.+..
T Consensus 324 ~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 324 EAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcC
Confidence 7777777776543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.6e-18 Score=162.31 Aligned_cols=300 Identities=12% Similarity=0.040 Sum_probs=172.3
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHH
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF 149 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 149 (498)
+..+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556677777788888888888888887643 3456677777777888888888888888887764 3356777778888
Q ss_pred HHhcCChhHHHHhhccCCCCCc------chHHHH------------HHHHHhcCChHHHHHHHhcCC---CCCcchHHHH
Q 041942 150 HANCGDLNTASVLFDGDAKMDV------VAWSSL------------TAGYARRGELSMARSLFDEMP---VRDLVSWNVM 208 (498)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~l------------~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 208 (498)
+...|++++|...|+.....++ ..+..+ ...+...|++++|+..++++. +.+...+..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 8888888888888876544322 223222 345555666666666665554 3334455555
Q ss_pred HHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCch
Q 041942 209 ITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285 (498)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 285 (498)
..++...|++++|...++++.+ .+..++..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~-------- 231 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV-------- 231 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH--------
Confidence 5555555555555555555432 234455555555555555555555555555432 1111111111000
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-h----hHHHHHHHHHHhCCCHHHHHHHH
Q 041942 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-V----STWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
. .......+...+.+.|++++|...++++.+ |+ . ..+..+..++...|++++|...+
T Consensus 232 ----------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 232 ----------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp ----------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0 000011224445555666666655554432 21 1 12344555666666666666666
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 359 REMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 359 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
++..+. .| +..++..+...+...|++++|.+.++++.+
T Consensus 296 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 296 SEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666653 33 455666666666666666666666666655
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=4.5e-20 Score=170.52 Aligned_cols=373 Identities=11% Similarity=0.089 Sum_probs=180.1
Q ss_pred CCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHH
Q 041942 52 PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 131 (498)
.|++++|.+.++++..| .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++..
T Consensus 16 ~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 78899999999999655 4899999999999999999999965 357779999999999999999999977777
Q ss_pred HHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHH
Q 041942 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG 211 (498)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 211 (498)
.+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|.+++|..+|..+ ..|..++.+
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~ 157 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAST 157 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHH
Confidence 664 45578889999999999999999988864 67779999999999999999999999987 589999999
Q ss_pred HHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 212 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
+.+.|++++|.+.+.++. ++.+|..++.+|+..|+++.|......+ ...+.-...++..|.+.|++++|..++
T Consensus 158 L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp HHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999983 7889999999999999999996555432 233334557888999999999999999
Q ss_pred HHHHHhhcCCcchhhHHHHHHHHHh--cCCHHHHHHHHhcCCC--------CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 292 CTLLDMTSGVAKVLHGNALIDMYAK--CGSIERAIEVFLGMRD--------RDVSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
+..+... .-....|+-|..+|++ -+++.+.++.|..-.. .+...|..+...|...++++.|....-+-
T Consensus 231 e~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 231 EAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 6666544 3445556666666665 4567777777754432 25678999999999999999888643322
Q ss_pred HHCC-----------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHhhCChHHHHHHHHHHHcc
Q 041942 362 QRLK-----------VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGRLANKRLLNM 428 (498)
Q Consensus 362 ~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~~~g~~~~a~~~~~~~~~~ 428 (498)
...- -..+...|-..+.-|.. ..+..--.++.-+ . ..+.|+ +..+.+.|++.-...+++.+.
T Consensus 309 ~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~-~~p~~l~~ll~~l-~-~~ld~~r~v~~~~~~~~l~l~~~yl~~v~-- 383 (449)
T 1b89_A 309 PTDAWKEGQFKDIITKVANVELYYRAIQFYLE-FKPLLLNDLLMVL-S-PRLDHTRAVNYFSKVKQLPLVKPYLRSVQ-- 383 (449)
T ss_dssp TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH-HCGGGHHHHHHHH-G-GGCCHHHHHHHHHHTTCTTTTHHHHHHHH--
T ss_pred ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh-cCHHHHHHHHHHH-H-hccCcHHHHHHHHHcCCcHHHHHHHHHHH--
Confidence 1110 01234455555555541 2222222222222 2 124444 555567777777777776655
Q ss_pred CCCCCchHHHHHHHHHhCCCchHHHHHH
Q 041942 429 RKDESGDYVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (498)
+.++..+-.++-..|...++++.-..-+
T Consensus 384 ~~n~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 384 NHNNKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455566677778888888876544433
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.3e-18 Score=163.86 Aligned_cols=282 Identities=13% Similarity=0.070 Sum_probs=145.9
Q ss_pred hcCChhHHHH-hhccCCC---C----CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHH
Q 041942 152 NCGDLNTASV-LFDGDAK---M----DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEK 220 (498)
Q Consensus 152 ~~g~~~~A~~-~~~~~~~---~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 220 (498)
..|++++|.. .|++... . +...+..+...+.+.|++++|+..|+++. +.+...+..+..++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3455555555 5543222 1 23345555555556666666666555554 3334455555555555555555
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 041942 221 ANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297 (498)
Q Consensus 221 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 297 (498)
|.+.|+++.+ .+..++..+...|...|++++|...++++...... +...+..+. .....
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~---------- 178 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAE-------EGAGG---------- 178 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH-------HHhhh----------
Confidence 5555554432 23445555555555555555555555555544211 111111000 00000
Q ss_pred hcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHH
Q 041942 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEI 371 (498)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~ 371 (498)
..+. ..+..+...+ ..|++++|...|+++.+ | +..++..+...|...|++++|+..++++.+. .| +..
T Consensus 179 --~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 252 (368)
T 1fch_A 179 --AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYL 252 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred --hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHH
Confidence 0000 0000122222 55666666666655442 2 3455666666666666666666666666653 23 355
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCC-----------
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDE----------- 432 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~----------- 432 (498)
++..+...+...|++++|...++++.+ ..|+ ...|...|++++|...+++++++.|++
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALE---LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 566666666666666666666666655 2333 233336666666666666666666665
Q ss_pred CchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 433 SGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
..+|..++.+|...|++++|..++++..
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 7899999999999999999999887543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=7.8e-18 Score=155.77 Aligned_cols=277 Identities=13% Similarity=0.036 Sum_probs=194.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGY 243 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 243 (498)
+...+..+...+...|++++|+.+|+++. +.+...+..++.++...|++++|...++++.+ .+...|..+...+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 44555566666666677777777776665 34445566666677777777777777766653 3456677777777
Q ss_pred HhCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHH
Q 041942 244 VLCG-MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322 (498)
Q Consensus 244 ~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (498)
...| ++++|...|++..+.. +.+...+..+...+...|++++|...+++.+...+ .+...+..+...|...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK--GCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT--TCSHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHhhHHH
Confidence 7777 7788888887777654 33455677777777788888888888755555443 234445557777888888888
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHhhcCCHHHHHH
Q 041942 323 AIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK--------VRPTEITFVGVLVACSHAGKVEEGKK 391 (498)
Q Consensus 323 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~ 391 (498)
|...+++..+ .+...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++|..
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888876553 356778888888888888888888888877631 12335677888888888888888888
Q ss_pred HHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHH-HhCCCc
Q 041942 392 YFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIY-ASRGEW 449 (498)
Q Consensus 392 ~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 449 (498)
.++++.+..+-.+. ...|...|++++|...++++++++|+++.++..++.++ ...|+.
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88888773222221 34444788888888888888888999988999998888 444554
No 18
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=4.9e-18 Score=165.66 Aligned_cols=382 Identities=10% Similarity=-0.049 Sum_probs=223.0
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhC-----C--CCC-CHhhHHHHHHHhhcccchhhHHHHHHHHHHhC-----
Q 041942 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-----S--IKP-NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG----- 135 (498)
Q Consensus 69 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----- 135 (498)
....||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3557888888888888888888888876441 1 122 34567778888888888888888888776531
Q ss_pred -CC-CChHHHHHHHHHHHhc--CChhHHHHhhccCCC---CCcchHHHHHHH---HHhcCChHHHHHHHhcCC---CCCc
Q 041942 136 -FE-FNRFVRNSLIYFHANC--GDLNTASVLFDGDAK---MDVVAWSSLTAG---YARRGELSMARSLFDEMP---VRDL 202 (498)
Q Consensus 136 -~~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~---~~~~ 202 (498)
.. ....++..+..++... +++++|...|++..+ .++..+..+..+ +...++.++|++.+++.. +.+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 01 1234555555444443 457778777775443 233344444333 334566667777766655 3344
Q ss_pred chHHHHHHHHHh----cCChHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041942 203 VSWNVMITGYAK----QGEMEKANELFNEVP---KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275 (498)
Q Consensus 203 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 275 (498)
..+..+...+.. .++.++|.+.+++.. ..+..++..+...|...|++++|...+++..+.. +-+..++..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 455555444433 345667777776554 2345566777777777777777777777776553 22344444444
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHH
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAE 352 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 352 (498)
.+|...+....+. . . ..........+..+.|...++... ..+..++..+...|...|+++
T Consensus 289 ~~y~~~~~~~~~~---------~--~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 289 CCYRAKVFQVMNL---------R--E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhH---------H--H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 4332111000000 0 0 000011111233566777776654 245678899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccC
Q 041942 353 ESIAMFREMQRLKVRPTEI--TFVGVLV-ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMR 429 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~ 429 (498)
+|+..|++..+....|... .+..+.. .....|+.++|+..+++..+ +.|+.. ...+....+.+++++.++.+
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~--~~~~~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSR--EKEKMKDKLQKIAKMRLSKN 426 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccH--HHHHHHHHHHHHHHHHHHhC
Confidence 9999999999854333221 2222222 34577999999999999987 666643 34455677788899999999
Q ss_pred CCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeEE
Q 041942 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473 (498)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 473 (498)
|+++.+|..|+.+|...|++++|++.|++..+.|...+...+|+
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999999999999999999887666666665
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.1e-17 Score=154.66 Aligned_cols=278 Identities=12% Similarity=0.033 Sum_probs=160.4
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL 146 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (498)
..+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4566677777888888888888888888887653 4455667677777788888888888888888764 3456677777
Q ss_pred HHHHHhcC-ChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChH
Q 041942 147 IYFHANCG-DLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEME 219 (498)
Q Consensus 147 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 219 (498)
...+...| ++++|...|++... .+...|..+...+...|++++|+..++++. +.+...+..+...+...|+++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 77777777 77777777765332 344556666666666666666666666554 223344444445555555555
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc
Q 041942 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299 (498)
Q Consensus 220 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 299 (498)
+|.+.|+ +..+.. +.+...+..+...+...|++++|...+++.+....
T Consensus 177 ~A~~~~~-------------------------------~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 177 LAERFFS-------------------------------QALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHH-------------------------------HHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-------------------------------HHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 5555554 444332 22334444444444444444444444433333221
Q ss_pred C-------CcchhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-
Q 041942 300 G-------VAKVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP- 368 (498)
Q Consensus 300 ~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p- 368 (498)
. +.....+..+...+...|++++|...+++.. ..+...|..+..+|...|++++|.+.++++.+ +.|
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~ 302 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRD 302 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSC
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCC
Confidence 0 1223344455555555555555555555443 12445555566666666666666666666555 334
Q ss_pred CHHHHHHHHHHH
Q 041942 369 TEITFVGVLVAC 380 (498)
Q Consensus 369 ~~~~~~~l~~~~ 380 (498)
+...+..+..++
T Consensus 303 ~~~~~~~l~~~~ 314 (330)
T 3hym_B 303 DTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 344444444444
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=2.7e-17 Score=152.03 Aligned_cols=293 Identities=12% Similarity=0.067 Sum_probs=138.9
Q ss_pred cchHHHHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCC
Q 041942 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQN 85 (498)
Q Consensus 6 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 85 (498)
.....+|..+|+++.|.++.+.+ +++.+|..+.. ++.+ .|++++|.+.|.+. +|...|..++..+...|+
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~-A~l~-~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAK-AQLQ-KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHH-HHHH-cCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC
Confidence 44566888999999999998888 33459999998 8999 99999999999764 677799999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhcc
Q 041942 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 86 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
+++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988777663 5567889999999999999999988884 36778999999999999999999999997
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 041942 166 DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245 (498)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 245 (498)
+ ..|..++.++.+.|++++|.+.++++. ++.+|..++.+|+..|+++.|......+. ..+.....++..|.+
T Consensus 148 a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 148 V-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD 219 (449)
T ss_dssp T-----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH
T ss_pred h-----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH
Confidence 7 589999999999999999999999983 88999999999999999999988877765 444445578999999
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--CCchHHHHHHHHHHHhhcCCc------chhhHHHHHHHHHhc
Q 041942 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL--GDLEVGKKVHCTLLDMTSGVA------KVLHGNALIDMYAKC 317 (498)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 317 (498)
.|++++|..+++...... +.....|+.+.-++++- ++..+..+.| ...-.+++ +...|..++..|...
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~---~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF---WSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH---STTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH---HHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988554 44566676666666543 4444555544 22222222 467788899999999
Q ss_pred CCHHHHHHHHhc
Q 041942 318 GSIERAIEVFLG 329 (498)
Q Consensus 318 ~~~~~A~~~~~~ 329 (498)
++++.|....-.
T Consensus 296 ~e~d~A~~tm~~ 307 (449)
T 1b89_A 296 EEYDNAIITMMN 307 (449)
T ss_dssp TCHHHHHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 999988876544
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=2.7e-16 Score=161.81 Aligned_cols=361 Identities=12% Similarity=0.097 Sum_probs=231.9
Q ss_pred hhhccCCChHHHHHhcccCC-CCC-----hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccc
Q 041942 47 GSVVIPGAINYAHKMFVKIT-EPD-----TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~-~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 120 (498)
.|.. .|.+.+|.++++++. .|+ ....+.|+....+. +..+..+..++.... . ..-+...+...|.
T Consensus 994 af~~-aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-d------~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 994 AFMT-ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-D------APDIANIAISNEL 1064 (1630)
T ss_pred HHHh-CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-c------HHHHHHHHHhCCC
Confidence 4555 677777777776665 222 23445555555554 445555555544321 1 1224455566677
Q ss_pred hhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 041942 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200 (498)
Q Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 200 (498)
+++|..+|++.. -.....+.++ ...|++++|.++.++.. +..+|..+..++...|++++|+..|.+. .
T Consensus 1065 yEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--d 1132 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--D 1132 (1630)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--C
Confidence 777777776642 1111112222 25666777777776553 3556777777777777777777777664 4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041942 201 DLVSWNVMITGYAKQGEMEKANELFNEVPK--RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278 (498)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 278 (498)
|...|..++.++.+.|++++|.+.|....+ ++....+.++.+|++.+++++....+ . .++...+..+...|
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRC 1205 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHH
Confidence 566667777777777777777777766543 33333445777777777766433332 1 34555666677777
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
...|++++|..+|.. ...|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|....
T Consensus 1206 e~eg~YeeA~~~Y~k----------A~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNN----------VSNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HhcCCHHHHHHHHHh----------hhHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 777777777777732 236677777777777788887777766 35577777777777777777777654
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHH-------H--hhCChHHHHHHHHHHHcc
Q 041942 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHY-------G--VHGDVELGRLANKRLLNM 428 (498)
Q Consensus 359 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y-------~--~~g~~~~a~~~~~~~~~~ 428 (498)
.. +..++..+..++..|.+.|.+++|+.+++.... ++|. ...| . +-++..++.+.|..-+++
T Consensus 1274 l~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1274 LH-----IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred Hh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 43 334556667888888888999999998877644 4443 2222 1 566777777888777776
Q ss_pred CC-----CCCchHHHHHHHHHhCCCchHHHHH
Q 041942 429 RK-----DESGDYVLLSNIYASRGEWNRVEKV 455 (498)
Q Consensus 429 ~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (498)
.| .+...|..++..|.+.|+++.|...
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 66 6778899999999999999988853
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1e-15 Score=151.34 Aligned_cols=403 Identities=12% Similarity=0.053 Sum_probs=263.2
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF 110 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 110 (498)
+-+...|..++. . .+ .|++++|..+|+++. +.+...|..++..+.+.|++++|..+|++.... .|+...|..
T Consensus 10 P~~~~~w~~l~~-~-~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-E-AQ-NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-H-HH-SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHH-H-HH-hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 346677888887 4 56 799999999999986 445668999999999999999999999999875 468777777
Q ss_pred HHHHh-hcccchhhHHH----HHHHHHHh-CCCC-ChHHHHHHHHHHHh---------cCChhHHHHhhccCCC-CCc--
Q 041942 111 VLKAC-TRLLYRNMGFC----VHGKIVKY-GFEF-NRFVRNSLIYFHAN---------CGDLNTASVLFDGDAK-MDV-- 171 (498)
Q Consensus 111 li~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~-- 171 (498)
.+... ...|+.+.|.+ +|+..++. |..| +...|...+..... .|+++.|..+|++... |..
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 76533 34577777665 66666553 5443 46678887777655 6788888888876554 221
Q ss_pred -chHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhh-------CC------CCC-----
Q 041942 172 -VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE-------VP------KRD----- 232 (498)
Q Consensus 172 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~------~~~----- 232 (498)
..|..........| ...+..++.. +.+++..|..++.. +. .|+
T Consensus 165 ~~~~~~~~~~e~~~~-~~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 165 EQLWRDYNKYEEGIN-IHLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHHHHHC-HHHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHHhhc-hhHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 12222111100001 0111111110 12233444433332 11 111
Q ss_pred ---hhhHHHHHHHHHhC----CCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------cCCch-------HH
Q 041942 233 ---VVSWNAMISGYVLC----GMN----KQALEMFEEMRSVGERPDDVTMLSLLTACAD-------LGDLE-------VG 287 (498)
Q Consensus 233 ---~~~~~~l~~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~~~~~-------~a 287 (498)
...|...+...... ++. .++..+|++..... +-+...|......+.. .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 13444444333222 222 36777888877652 3456677777766654 68876 78
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch-hHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DV-STWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
..+|++.+... .+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|.++|++..+
T Consensus 306 ~~~~~~Al~~~-~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 306 ANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHTTTT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88885555321 234567778888888888999999988887653 3 33 4788888888888899999999999887
Q ss_pred CCCCCC-HHHHHHHHHH-HhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCc--
Q 041942 364 LKVRPT-EITFVGVLVA-CSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESG-- 434 (498)
Q Consensus 364 ~~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~-- 434 (498)
. .|+ ...|...... +...|+.++|..+|++..+..+-.|+ +..+.+.|+.++|+.+|++++...|.++.
T Consensus 385 ~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 385 D--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp C--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred c--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 4 343 3333332222 33578999999999988874332222 22333788999999999999988776665
Q ss_pred --hHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 435 --DYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 435 --~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.|...+......|+.+.+..+++++.+.-
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88888999999999999999999987654
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=1.7e-15 Score=148.24 Aligned_cols=314 Identities=11% Similarity=0.020 Sum_probs=154.1
Q ss_pred ChhhHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc----ccchhhHHHHHHHHHHhCCCCCh
Q 041942 69 DTFMYNTIIRGSAQ----SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR----LLYRNMGFCVHGKIVKYGFEFNR 140 (498)
Q Consensus 69 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 140 (498)
+..++..+...|.. .+++++|+..|++..+.| +...+..|-..+.. .++.++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444444444444 556666666666655543 33444445454544 555666666666655543 34
Q ss_pred HHHHHHHHHHHh----cCChhHHHHhhccCCC-CCcchHHHHHHHHHh----cCChHHHHHHHhcCC-CCCcchHHHHHH
Q 041942 141 FVRNSLIYFHAN----CGDLNTASVLFDGDAK-MDVVAWSSLTAGYAR----RGELSMARSLFDEMP-VRDLVSWNVMIT 210 (498)
Q Consensus 141 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~ 210 (498)
..+..|...|.. .+++++|...|++... .++..+..+...|.. .+++++|...|++.. ..+...+..+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444455555555 4555555555554322 233344444444444 445555555555443 233444444444
Q ss_pred HHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-
Q 041942 211 GYAK----QGEMEKANELFNEVPK-RDVVSWNAMISGYVL----CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD- 280 (498)
Q Consensus 211 ~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~- 280 (498)
.|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|..+|++..+.| +...+..+...+..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCC
Confidence 4544 4555555555554432 234444455555543 455555555555555443 22333333333433
Q ss_pred ---cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhc-----CCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCC--
Q 041942 281 ---LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC-----GSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHG-- 349 (498)
Q Consensus 281 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~-- 349 (498)
.++.++|...|++.... + +...+..|...|... ++.++|...|++..+ .+...+..+...|...|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSE 344 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCH
T ss_pred CCCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Confidence 45555555555333322 1 122333444444444 555555555554432 23444555555555444
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHhHH
Q 041942 350 -FAEESIAMFREMQRLKVRPTEITFVGVLVACSH----AGKVEEGKKYFKLMRD 398 (498)
Q Consensus 350 -~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 398 (498)
++++|+++|++..+.| +...+..+...|.. .+++++|.+.+++..+
T Consensus 345 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 4555666666555532 34444455555554 4555555555555544
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.3e-17 Score=156.83 Aligned_cols=268 Identities=14% Similarity=0.112 Sum_probs=185.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGY 243 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 243 (498)
+...+..+...+.+.|++++|+..|+++. +.+..+|..+..++...|++++|...|+++.+ .+..+|..+...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45568888888888899999999888887 55667888888888888888888888887763 4567888888888
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPD-----------DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
...|++++|...++++.+.. |+ ...+..+...+...|++++|...+++.+...+...+...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888887642 22 122233466777788888888888666665544335667777777
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHH
Q 041942 313 MYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEE 388 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 388 (498)
.|...|++++|...|+++.+ .+..+|..+..+|...|++++|+..|+++.+. .|+ ..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHH
Confidence 78888888888887776552 35667777888888888888888888877773 343 6677777777777777777
Q ss_pred HHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHH
Q 041942 389 GKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 389 a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
|...++++.+. .|+...- . .......+..+|..++.++...|+.+.|..+.++
T Consensus 300 A~~~~~~al~~---~~~~~~~------~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSL---QRKSRNQ------Q--------QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH---HHCC--------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHh---CcccCCC------c--------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777777661 2210000 0 0000011467899999999999999988887665
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=5.8e-15 Score=152.09 Aligned_cols=350 Identities=12% Similarity=0.108 Sum_probs=273.9
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCC--CCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHH
Q 041942 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI--KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 145 (498)
.++.--...++.|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..++.++....... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 3444456678889999999999999999984321 12345566677776666 556666666665422 1 344
Q ss_pred HHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 041942 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF 225 (498)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 225 (498)
+...+...|.+++|..+|++... .....+.+ +-..+++++|.++.++.. ++.+|..+..++.+.|++++|...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 77888999999999999998742 11222223 227889999999999773 5778999999999999999999999
Q ss_pred hhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchh
Q 041942 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305 (498)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (498)
.+. .|...|..++..+.+.|++++|.+.|...++.. ++....+.++.+|++.++++....+. . .++..
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI------~--~~n~a 1196 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI------N--GPNNA 1196 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH------h--CCCHH
Confidence 775 677888899999999999999999999887664 33333445899999999988644443 1 23445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
.+..+...|...|++++|..+|... ..|..+..+|.+.|++++|++.+++. .+..+|..+-.+|...|+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhH
Confidence 6667999999999999999999985 58999999999999999999999987 446899999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC--CCchHHHHHHHH
Q 041942 386 VEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR--GEWNRVEKVRKL 458 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 458 (498)
+..|......+. ..|+ +..|.+.|.+++|.++++.++.++|.+...|..|+.+|.+- ++.-+++++|..
T Consensus 1266 f~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1266 FRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999998775432 2344 55678999999999999999999999999999998888876 355566666553
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=5.9e-16 Score=153.09 Aligned_cols=369 Identities=10% Similarity=0.014 Sum_probs=256.6
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL 146 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (498)
+-+...|..++. +.+.|++++|..+|+++.+. .+-+...|..++..+.+.|+++.|..+|+++++.. |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346778988888 47789999999999999875 34567788889998889999999999999998864 577778777
Q ss_pred HHHH-HhcCChhHHHH----hhccCC-----C-CCcchHHHHHHHHHh---------cCChHHHHHHHhcCC-CCCc---
Q 041942 147 IYFH-ANCGDLNTASV----LFDGDA-----K-MDVVAWSSLTAGYAR---------RGELSMARSLFDEMP-VRDL--- 202 (498)
Q Consensus 147 ~~~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~-~~~~--- 202 (498)
+... ...|+.++|.+ +|+... . .+...|...+....+ .|+++.|..+|++.. .|..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 34577776655 554321 1 244556666655443 566777777777666 2221
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH------HhCC---CCCC------
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM------RSVG---ERPD------ 267 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m------~~~g---~~p~------ 267 (498)
..|..........+. ..+..++. ...+++..|..++..+ .+.. ++|+
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 122211111000110 11111111 1234566677666652 2221 2443
Q ss_pred --HHHHHHHHHHHhc----cCCc----hHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh-------cCCHH-------HH
Q 041942 268 --DVTMLSLLTACAD----LGDL----EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK-------CGSIE-------RA 323 (498)
Q Consensus 268 --~~~~~~li~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A 323 (498)
...|...+..... .++. +.+..+|++.+...+ .+...|..++..+.+ .|+++ +|
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p--~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 2344444433222 1232 367778877776653 456677777777775 68876 89
Q ss_pred HHHHhcCCC---C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 324 IEVFLGMRD---R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE--ITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 324 ~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
..+|++..+ | +...|..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|.++|++..
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999987763 3 578899999999999999999999999999 56653 478888888889999999999999998
Q ss_pred HhcCCCCC-hhH--------HHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 398 DEYNIEPN-IRH--------YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 398 ~~~~~~p~-~~~--------y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+ ..|. ... |...|+.++|..+|+++++..|+++.+|..++..+.+.|+.++|..+|++....+.
T Consensus 384 ~---~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 384 E---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp T---CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred h---ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 7 2333 111 22689999999999999999999999999999999999999999999999998753
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=2.2e-16 Score=142.78 Aligned_cols=216 Identities=9% Similarity=0.011 Sum_probs=102.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (498)
+..+|...|+++.|+..++.. -+|+..++..+...+...++.++|.+.+++++.....+.+...+..+...+...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 344444444444444433221 1333344444444444444444444444333222111122333334444555555
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhhcCCHHHHHHHHHH
Q 041942 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF---VGVLVACSHAGKVEEGKKYFKL 395 (498)
Q Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~ 395 (498)
++++|.+.+++ ..+...+..++..|.+.|++++|.+.++++.+. .|+.... ..++..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 55555555555 334455555555555555566666555555552 2432111 1112222333555566666655
Q ss_pred hHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchH-HHHHHHHhhhC
Q 041942 396 MRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR-VEKVRKLMDDS 462 (498)
Q Consensus 396 ~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 462 (498)
+.+..+-.|. ...|...|++++|+..++++++.+|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5552111111 1223355566666666666666666666666666666666666654 45566666543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=4.5e-17 Score=153.13 Aligned_cols=274 Identities=12% Similarity=-0.011 Sum_probs=197.7
Q ss_pred CChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHH
Q 041942 53 GAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129 (498)
Q Consensus 53 ~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 129 (498)
+....+...+.... ..+...|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|...|+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555444 3356679999999999999999999999998864 4578889999999999999999999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC---C----------cchHHHHHHHHHhcCChHHHHHHHhc
Q 041942 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM---D----------VVAWSSLTAGYARRGELSMARSLFDE 196 (498)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~----------~~~~~~l~~~~~~~~~~~~A~~~~~~ 196 (498)
++.+.. +.+..++..+..+|...|++++|...|++.... + ...+..+...+.+.|++++|+..|++
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999875 456889999999999999999999999875531 1 12233457788888899999998888
Q ss_pred CC--CC---CcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 041942 197 MP--VR---DLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268 (498)
Q Consensus 197 ~~--~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 268 (498)
+. .| +..++..+...+...|++++|.+.|+++.+ .+..+|..+..+|...|++++|...|++..+.. +.+.
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 281 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFI 281 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCch
Confidence 87 33 567788888888888888888888887653 456788888888888888888888888887653 3357
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc----------chhhHHHHHHHHHhcCCHHHHHHHHhc
Q 041942 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA----------KVLHGNALIDMYAKCGSIERAIEVFLG 329 (498)
Q Consensus 269 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (498)
.++..+..++...|++++|...|++.+...+... +...|..+..++...|+.+.+..+..+
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7788888888888888888888866665442211 245556666666666666666666554
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=6.9e-17 Score=151.96 Aligned_cols=275 Identities=14% Similarity=0.026 Sum_probs=155.4
Q ss_pred CCChHHHHH-hcccCC-----CC--ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhh
Q 041942 52 PGAINYAHK-MFVKIT-----EP--DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123 (498)
Q Consensus 52 ~~~~~~A~~-~~~~~~-----~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 123 (498)
.|++++|.+ .|+... .| +...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 567777777 666543 12 35568888888888999999999999988764 4467788888888888899999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHH---------------HHHHHHhcC
Q 041942 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSS---------------LTAGYARRG 185 (498)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~---------------l~~~~~~~~ 185 (498)
|...++++.+.. +.+..++..+..+|...|++++|...|++... .+...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 999999888875 44677888888888888888888888875433 12212111 112222445
Q ss_pred ChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 041942 186 ELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 186 ~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 263 (498)
++++|...|+++. .|+. ++..++..+...|...|++++|...++++.+..
T Consensus 196 ~~~~A~~~~~~a~~~~p~~----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTS----------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTS----------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhCcCc----------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555555554443 1110 023344444455555555555555555444332
Q ss_pred CCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CC------
Q 041942 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RD------ 334 (498)
Q Consensus 264 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~------ 334 (498)
+.+..++..+...+...|++++|...+++.+... +.+...+..+..+|.+.|++++|...|+++.+ .+
T Consensus 248 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 248 -PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 2234444445555555555555555553333322 12333444455555555555555555544331 11
Q ss_pred -----hhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 335 -----VSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 335 -----~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
..+|..+..+|...|++++|..+++
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4556666666666666666666554
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=9.9e-15 Score=142.79 Aligned_cols=331 Identities=11% Similarity=0.010 Sum_probs=272.8
Q ss_pred CCChHHHHHhcccCC-CCChhhHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc----ccchh
Q 041942 52 PGAINYAHKMFVKIT-EPDTFMYNTIIRGSAQ----SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR----LLYRN 122 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~ 122 (498)
.+++++|...|+... ..+...+..|...|.. .+++++|++.|++..+.| +...+..|-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 589999999998876 5677888889999988 899999999999998865 56667777777776 78999
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHHHHh----cCChhHHHHhhccCCC-CCcchHHHHHHHHHh----cCChHHHHHH
Q 041942 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHAN----CGDLNTASVLFDGDAK-MDVVAWSSLTAGYAR----RGELSMARSL 193 (498)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~ 193 (498)
+|...|++..+.| +...+..|...|.. .++.++|.+.|++..+ .+...+..+...|.. .+++++|..+
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999999999876 56778888888887 7899999999986543 466778888888887 8999999999
Q ss_pred HhcCC-CCCcchHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHhCC
Q 041942 194 FDEMP-VRDLVSWNVMITGYAK----QGEMEKANELFNEVPK-RDVVSWNAMISGYVL----CGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 194 ~~~~~-~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 263 (498)
|++.. ..+...+..+...|.. .++.++|.++|++..+ .+...+..+...|.. .+++++|...|++..+.|
T Consensus 210 ~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 210 YRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99887 5566778888888886 8899999999998765 466778888888888 899999999999998775
Q ss_pred CCCCHHHHHHHHHHHhcc-----CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC---CHHHHHHHHhcCCC-CC
Q 041942 264 ERPDDVTMLSLLTACADL-----GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG---SIERAIEVFLGMRD-RD 334 (498)
Q Consensus 264 ~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~ 334 (498)
+...+..+...+... +++++|...|++.... + +...+..+...|...| +.++|...|++..+ .+
T Consensus 290 ---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~ 362 (490)
T 2xm6_A 290 ---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE 362 (490)
T ss_dssp ---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC
T ss_pred ---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC
Confidence 445666677777766 8999999999655543 3 3445567777887766 78999999987764 57
Q ss_pred hhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHhHH
Q 041942 335 VSTWSTLIGGLAF----HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH----AGKVEEGKKYFKLMRD 398 (498)
Q Consensus 335 ~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 398 (498)
+..+..+...|.. .+++++|..+|++..+.| +...+..|...|.+ .++.++|...+++..+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 8889999999998 899999999999999865 46677777777777 7888888888888877
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=5.4e-16 Score=140.22 Aligned_cols=182 Identities=10% Similarity=0.051 Sum_probs=75.2
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCchHH
Q 041942 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP-DDVTMLSLLTACADLGDLEVG 287 (498)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a 287 (498)
..+|...|+++.|...++....++..++..+...+...++.++|+..++++...+..| +...+..+...+...|++++|
T Consensus 41 ~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444444444444444433322333344444444444444444444444444433222 222333333444444444444
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHH---HHHHHHHHhCCCHHHHHHHHHHHH
Q 041942 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTW---STLIGGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~ 362 (498)
...+++ +.+...+..++..|.+.|++++|...|+++.+ |+.... ...+..+...|++++|..+|+++.
T Consensus 121 l~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l 193 (291)
T 3mkr_A 121 LRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193 (291)
T ss_dssp HHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 444421 22333444444444444444444444444431 221100 111122223344555555555544
Q ss_pred HCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 363 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+. .+.+...++.+..++.+.|++++|...++++.+
T Consensus 194 ~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 194 DK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 122344444444444555555555555555444
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=2e-16 Score=145.99 Aligned_cols=254 Identities=11% Similarity=0.026 Sum_probs=141.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGY 243 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 243 (498)
+...+..+...+...|++++|..+|+++. +.+...+..+..++...|++++|...|+++.+ .+..++..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34455666667777777777777777665 33445666666666677777777666666542 3455666666666
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHhccCCchHHHHHHHHHHHhhcCCcchhhHH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSL--------------LT-ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (498)
...|++++|...++++.+... .+...+..+ .. .+...|++++|...+++.+...+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------- 169 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP--------- 169 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST---------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC---------
Confidence 666777777766666665421 111222221 11 14444445555555533332221
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHH
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 388 (498)
.+...+..+...|...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 170 ------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 170 ------------------------NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 133444444445555555555555555544421 1123444444455555555555
Q ss_pred HHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCC------------CCchHHHHHHHHHhCCC
Q 041942 389 GKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKD------------ESGDYVLLSNIYASRGE 448 (498)
Q Consensus 389 a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~ 448 (498)
|...++++.+ ..|+ ...|...|++++|...++++++..|. ++.+|..++.++...|+
T Consensus 225 A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 225 ALDAYNRALD---INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH---cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 5555555444 1222 22233555555555555555555666 57789999999999999
Q ss_pred chHHHHHHHHhhh
Q 041942 449 WNRVEKVRKLMDD 461 (498)
Q Consensus 449 ~~~A~~~~~~m~~ 461 (498)
+++|..++++..+
T Consensus 302 ~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 302 PDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999886643
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=9.3e-16 Score=141.52 Aligned_cols=260 Identities=10% Similarity=-0.009 Sum_probs=170.3
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHH
Q 041942 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIY 148 (498)
Q Consensus 69 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 148 (498)
+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34556777778888888888888888887753 3466777788888888888888888888888764 446777888888
Q ss_pred HHHhcCChhHHHHhhccCCC---CCcchHHHH--------------HH-HHHhcCChHHHHHHHhcCC---CCCcchHHH
Q 041942 149 FHANCGDLNTASVLFDGDAK---MDVVAWSSL--------------TA-GYARRGELSMARSLFDEMP---VRDLVSWNV 207 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 207 (498)
.+...|++++|.+.+++... .+...+..+ .. .+...|++++|...++++. +.+...+..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 88888888888888875432 222223222 22 2566677777777777665 334566666
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 041942 208 MITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284 (498)
Q Consensus 208 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 284 (498)
+...+...|++++|.+.++++.+ .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 77777777777777777766542 345566667777777777777777777766543 33455666666667777777
Q ss_pred hHHHHHHHHHHHhhcCCc----------chhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 285 EVGKKVHCTLLDMTSGVA----------KVLHGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
++|...+++.+...+... +...+..+..++.+.|+.++|..++++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777755544332200 34455555666666666666666665443
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=5e-14 Score=137.21 Aligned_cols=375 Identities=10% Similarity=-0.070 Sum_probs=225.0
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC------------CCChhhHHHHHHHHhccCChHHHHHHHHHHHhC--
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT------------EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-- 99 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-- 99 (498)
......|+.+-. ++.. .|++++|++.|++.. .....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~-~~~~-~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 48 EFKATMCNLLAY-LKHL-KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp --CCHHHHHHHH-HHHH-TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-HHHH-CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 334556777666 7888 999999999987652 224568999999999999999999999987542
Q ss_pred ---C-CCC-CHhhHHHHHHHhhc--ccchhhHHHHHHHHHHhCCCCChHHHHHHHHH---HHhcCChhHHHHhhccCC--
Q 041942 100 ---S-IKP-NKFTFSFVLKACTR--LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF---HANCGDLNTASVLFDGDA-- 167 (498)
Q Consensus 100 ---~-~~p-~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~-- 167 (498)
+ ..+ ...++..+..++.. .+++++|...|++..+.. +-+...+..+..+ +...++.++|.+.+++..
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 111 34556555544443 457999999999999875 3345555555555 345677788888887543
Q ss_pred -CCCcchHHHHHHHHHh----cCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhH
Q 041942 168 -KMDVVAWSSLTAGYAR----RGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSW 236 (498)
Q Consensus 168 -~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 236 (498)
+.+...+..+...+.. .+++++|.+.+++.. +.+..++..+...|...|++++|...|++..+ .+..++
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 3445556555555444 467889999998876 55667889999999999999999999998764 345667
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (498)
..+...|...+.... ... ... ........+..+.|...++......+ .+...+..+...|..
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-ENG------MYGKRKLLELIGHAVAHLKKADEAND--NLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCT--TTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---------hHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcCC--chhhhhhhHHHHHHH
Confidence 777666643211111 000 000 00001112235677777755554443 345566778889999
Q ss_pred cCCHHHHHHHHhcCCC--CChh----HHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 041942 317 CGSIERAIEVFLGMRD--RDVS----TWSTLIG-GLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~--~~~~----~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 389 (498)
.|++++|...|++..+ ++.. .+..+.. .+...|++++|+..|++..+ +.|+....... ...+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l 415 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKL 415 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHH
Confidence 9999999999987642 3221 2333332 34567899999999999998 66765433222 2344
Q ss_pred HHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 390 KKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 390 ~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
.++++......+-.+. ...|...|++++|...|+++++++|.+|.++.-++
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 5556665553222333 34455889999999999999999999887776554
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=3.7e-17 Score=163.09 Aligned_cols=151 Identities=14% Similarity=0.158 Sum_probs=127.9
Q ss_pred CCcChHHHHHHHHhhhhccCCChHHHHHhcccCC-------CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH
Q 041942 33 FNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-------EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK 105 (498)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 105 (498)
...-..+|+.+|. .|++ .|++++|.++|+.|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 123 ~~~~~~TynaLId-glcK-~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFFK-CCLL-TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHHH-HHHH-HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHhHHHHHHHHHH-HHHh-CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 3444568999999 9999 999999999997652 799999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcccch-hhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC-----CcchHHHHHH
Q 041942 106 FTFSFVLKACTRLLYR-NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM-----DVVAWSSLTA 179 (498)
Q Consensus 106 ~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~ 179 (498)
.||+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+..+ ...+...|..
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999985 789999999999999999999999999888887777776665544431 2334445555
Q ss_pred HHHhcC
Q 041942 180 GYARRG 185 (498)
Q Consensus 180 ~~~~~~ 185 (498)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.4e-14 Score=128.66 Aligned_cols=219 Identities=11% Similarity=0.012 Sum_probs=148.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCC-cc----hhhHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AK----VLHGN 308 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 308 (498)
..+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+++.+...+.. ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345566666777777777777777766655 556666666777777777777777775554433211 11 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGK 385 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 385 (498)
.+...+...|++++|...|++..+ |+ ...+...|++++|...++++.. ..|+ ...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 667777777777777777766553 33 2345555677777777777777 3343 5566666777777777
Q ss_pred HHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 386 VEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+++|...++++.+..+..+. ...|...|++++|...++++++.+|+++.+|..++.+|...|++++|...+++..
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777777662211111 3334477788888888888888889889999999999999999999999999987
Q ss_pred hCC
Q 041942 461 DSD 463 (498)
Q Consensus 461 ~~~ 463 (498)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 654
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=150.54 Aligned_cols=144 Identities=12% Similarity=0.109 Sum_probs=105.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMR-------DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 375 (498)
-..+|++||++|++.|++++|.++|.+|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35577888888888888888888886543 47888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcCC-HHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCC---------CchHHHHHHHHHh
Q 041942 376 VLVACSHAGK-VEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDE---------SGDYVLLSNIYAS 445 (498)
Q Consensus 376 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~l~~~~~~ 445 (498)
+|.++++.|+ .++|.++|++|.+ .|+.||..+|...=+-++-..+++.+.+..|+- ..+...|-+.|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 8888888887 4678888888888 788888888874444444445666555554431 2233445555665
Q ss_pred CC
Q 041942 446 RG 447 (498)
Q Consensus 446 ~g 447 (498)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=6.6e-14 Score=120.82 Aligned_cols=202 Identities=14% Similarity=0.109 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.+...+ .+...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Confidence 3444455555555555555555555555442 22344455555555555555555555544433321 12233333444
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHH
Q 041942 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKK 391 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 391 (498)
.+...+. . ... .+...|++++|+..+++.++ +.|+ ...+..+...+...|++++|+.
T Consensus 82 ~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 82 AYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 4333300 0 000 00111555666666666555 3343 4455555555666666666666
Q ss_pred HHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 392 YFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 392 ~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
.+++..+ ..-.|. ...|...|++++|...|+++++++|+++.++..++.++...|++++|++.+++..
T Consensus 140 ~~~~al~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 140 SLKQALA-LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHH-HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHh-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6666555 221111 2233366666666667777777889999999999999999999999999998764
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=2.1e-13 Score=122.16 Aligned_cols=241 Identities=12% Similarity=0.025 Sum_probs=170.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD--DVTMLSLLTA 277 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~ 277 (498)
..+......+...|++++|...|+++.+ .+...+..+...|...|++++|...+++..+.+..|+ ...|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455566777788888888888877653 3455788888888888999999999988887432222 3347788888
Q ss_pred HhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHH
Q 041942 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEES 354 (498)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 354 (498)
+...|++++|...+++.+...+ .+...+..+...|...|++++|...|++..+ .+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999966666543 3456778889999999999999999988775 3566777777344445699999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCC---HHHHHHHHHHhHHhcCCCCC-------------hhHHHhhCChHH
Q 041942 355 IAMFREMQRLKVRPT-EITFVGVLVACSHAGK---VEEGKKYFKLMRDEYNIEPN-------------IRHYGVHGDVEL 417 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~-------------~~~y~~~g~~~~ 417 (498)
.+.++++.+ ..|+ ...+..+...+...|+ +++|...++++.+...-.|+ ...|...|++++
T Consensus 162 ~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988 4454 6677777788888887 77788888887763222233 122336677777
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 418 GRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
|...++++++++|+++.++..+.......+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 777777777777777777666665554443
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=2e-13 Score=131.63 Aligned_cols=370 Identities=11% Similarity=0.009 Sum_probs=205.5
Q ss_pred hHHHHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCCh---HHHHHhcccCCCCChhhHHHHHHHHhccC
Q 041942 8 SSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAI---NYAHKMFVKITEPDTFMYNTIIRGSAQSQ 84 (498)
Q Consensus 8 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~g 84 (498)
+..+...-|+.+.|.+.+....+.|.. ..+..+-. +|.. .|+. ++|.+.|+.....++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~---~A~~~Lg~-~y~~-~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS---EAQVGLAD-IQVG-TRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC---TGGGTCC------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH---HHHHHHHH-HHHc-cCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 444555667888898888888887632 22333333 4555 6666 89999998887557777877777555554
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchh---hHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCh
Q 041942 85 -----NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN---MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156 (498)
Q Consensus 85 -----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 156 (498)
++++|+..|++..+.|. | ..+..|...|...+..+ .+.+.+......| +...+..|...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 77889999999888663 2 25666666666554433 3455555555544 355666777777777744
Q ss_pred h----HHHHhhccCCCCCcchHHHHHHHHHhcC---ChHHHHHHHhcCC---CCCcchHHHHHHHHHhc----CChHHHH
Q 041942 157 N----TASVLFDGDAKMDVVAWSSLTAGYARRG---ELSMARSLFDEMP---VRDLVSWNVMITGYAKQ----GEMEKAN 222 (498)
Q Consensus 157 ~----~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~----~~~~~A~ 222 (498)
+ .+..+++.....++..+..+...|...| +.++|+..|++.. +++...+..+...|... ++.++|.
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 4 4444555555556667777777777777 7778888777665 33333335566666444 5777777
Q ss_pred HHHhhCCCCChhhHHHHHHH-H--HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----CchHHHHHHHHH
Q 041942 223 ELFNEVPKRDVVSWNAMISG-Y--VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG-----DLEVGKKVHCTL 294 (498)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~ 294 (498)
+.|++....+...+..+... | ...+++++|...|++..+.| +...+..+...|. .| ++++|...|++.
T Consensus 238 ~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 238 ALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 77777663345566666655 3 45677777777777777665 4445555555554 34 677777777333
Q ss_pred HHhhcCCcchhhHHHHHHHHHh----cCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 041942 295 LDMTSGVAKVLHGNALIDMYAK----CGSIERAIEVFLGMRDR-DVSTWSTLIGGLAF----HGFAEESIAMFREMQRLK 365 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~ 365 (498)
. .-++..+..|...|.. ..+.++|...|++..++ +......|...|.. .++..+|..+|+...+.|
T Consensus 314 a-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 314 V-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp T-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred h-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 3 2233444455555554 23677777777665443 45556666666553 346677777777776655
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 366 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
. ++.......+......++..+|..+.++.++
T Consensus 389 ~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 389 T-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp C-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2 2222222222222333455555555555444
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=5.6e-14 Score=135.45 Aligned_cols=364 Identities=9% Similarity=-0.021 Sum_probs=156.0
Q ss_pred CCChHHHHHhcccCC-CCChhhHHHHHHHHhccCCh---HHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcc-----cchh
Q 041942 52 PGAINYAHKMFVKIT-EPDTFMYNTIIRGSAQSQNP---LDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-----LYRN 122 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----~~~~ 122 (498)
.|++++|.++|+... ..+..++..|...+...|+. ++|++.|++..+. +...+..|...+... ++.+
T Consensus 16 ~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 566666666666554 23344445555555555555 6666666666532 333444444423222 2556
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC-CCC
Q 041942 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRD 201 (498)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~ 201 (498)
+|...|++..+.|.. ..+..|...|...+..+.+.+ +.+.+.... ..+
T Consensus 92 ~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~----------------------------a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 92 EAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVN----------------------------AQQQISQWQAAGY 140 (452)
T ss_dssp HHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCC----------------------------HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHH----------------------------HHHHHHHHHHCCC
Confidence 666666666665422 244445555554443332211 111111111 112
Q ss_pred cchHHHHHHHHHhcC----ChHHHHHHHhhCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041942 202 LVSWNVMITGYAKQG----EMEKANELFNEVPKRDVVSWNAMISGYVLCG---MNKQALEMFEEMRSVGERPDDVTMLSL 274 (498)
Q Consensus 202 ~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~l 274 (498)
+..+..+...|...+ ..+.+..+++.....++..+..+...|...| +.++|+..|++..+.| .++...+..+
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 333334444444444 2333334444444444445555555555555 5555666665555555 3333333344
Q ss_pred HHHHhcc----CCchHHHHHHHHHHHhhcCCcchhhHHHHHHH-H--HhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHH
Q 041942 275 LTACADL----GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM-Y--AKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLA 346 (498)
Q Consensus 275 i~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~ 346 (498)
...|... +++++|...|+... . -++..+..|... | ...+++++|...|++..+ .+...+..|...|.
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa--~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA--P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG--G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc--C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444333 45555655553332 1 222333334433 2 235556666665555443 24445555555554
Q ss_pred hCC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHhHHhcCCCCC----hhHHH---
Q 041942 347 FHG-----FAEESIAMFREMQRLKVRPTEITFVGVLVACSH----AGKVEEGKKYFKLMRDEYNIEPN----IRHYG--- 410 (498)
Q Consensus 347 ~~~-----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~----~~~y~--- 410 (498)
.| ++++|+++|++.. . -+...+..|...|.. ..++++|..++++..+ .|...- ...|.
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NGQNSADFAIAQLFSQGK 368 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TTCTTHHHHHHHHHHSCT
T ss_pred -cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hChHHHHHHHHHHHHhCC
Confidence 33 5566666655554 2 233444444444433 2255666666655554 332111 11111
Q ss_pred -hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 411 -VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 411 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
...++++|...|+++.+..+++.......+......++..+|..+.++..+.
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 2346666666666666544433222222222222334566777777776554
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=6.4e-14 Score=124.32 Aligned_cols=218 Identities=8% Similarity=-0.080 Sum_probs=145.1
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCC--CC----hHHHH
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE--FN----RFVRN 144 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 144 (498)
..|..+...+...|++++|+..|++..+.. .+...|..+..++...|++++|...++++.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 457777788888888888888888887765 67778888888888888888888888888775321 11 46777
Q ss_pred HHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHH
Q 041942 145 SLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKA 221 (498)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 221 (498)
.+...+...|++++|...|++....+.. ...+.+.|++++|...++++. +.+...+..+...+...|++++|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 7777777888888887777665432211 234555566777777776654 22344566666666666676666
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 041942 222 NELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 222 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 296 (498)
...|+++.+ .+..+|..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|...++..+.
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666542 345566666666666677777776666666543 33455666666666666666666666644443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=2.4e-12 Score=115.41 Aligned_cols=219 Identities=10% Similarity=0.003 Sum_probs=131.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCchHHHHHHHHHHHhhcCCcchhhHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD----LGDLEVGKKVHCTLLDMTSGVAKVLHGN 308 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (498)
..++..+...|...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++..... +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHH
Confidence 3444555555555555555555555555422 23444445555555 555666665554333321 334444
Q ss_pred HHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041942 309 ALIDMYAK----CGSIERAIEVFLGMRD-RDVSTWSTLIGGLAF----HGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379 (498)
Q Consensus 309 ~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 379 (498)
.+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+.+|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55555555 5666666666554432 245556666666666 666666666666666643 34455555555
Q ss_pred Hhh----cCCHHHHHHHHHHhHHhcCCCCC-----hhHHHh----hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh-
Q 041942 380 CSH----AGKVEEGKKYFKLMRDEYNIEPN-----IRHYGV----HGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS- 445 (498)
Q Consensus 380 ~~~----~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 445 (498)
+.. .+++++|...+++..+ .+ .|. ...|.. .+++++|...++++++.+| +.++..++.+|.+
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACD-LK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH-TT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHH-CC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 555 6666666666666665 22 111 222334 6777777777777776654 6788899999999
Q ss_pred ---CCCchHHHHHHHHhhhCCCc
Q 041942 446 ---RGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 446 ---~g~~~~A~~~~~~m~~~~~~ 465 (498)
.+++++|++.|++..+.|..
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 89999999999999887753
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=2.1e-12 Score=114.24 Aligned_cols=198 Identities=10% Similarity=0.013 Sum_probs=118.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+.... .+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS--RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHH
Confidence 4456666777777777777777777776543 33556666666667777777777777754444322 23444555555
Q ss_pred HHHhcCCHHHHHHHHhcCCC----C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHH
Q 041942 313 MYAKCGSIERAIEVFLGMRD----R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 387 (498)
.|...|++++|..+++++.+ | +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666655443 1 23445555555666666666666666655522 112444555555555555555
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 388 EGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 388 ~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
+|...+++ +++..|++...+..++.++...|++++|.+.++++.+..
T Consensus 193 ~A~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDL-----------------------------FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHH-----------------------------HHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----------------------------HHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 55555544 444566666677777777777777777777777776643
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=1.5e-12 Score=116.59 Aligned_cols=240 Identities=10% Similarity=0.025 Sum_probs=139.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 041942 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151 (498)
Q Consensus 72 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (498)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|+++.|...++++.+.. ++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~--------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA--------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH---------
Confidence 34445556666777777777777766542 2234456666666666666666666666666522 11111
Q ss_pred hcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhC
Q 041942 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEV 228 (498)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (498)
....|..+...+...|++++|+..|++.. +.+...+..+..++...|++++|...|++.
T Consensus 73 ------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 73 ------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred ------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 01124444455555555555555555544 334456666677777777777777777766
Q ss_pred CC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---chHHHHHHHHHHHhhcCCc
Q 041942 229 PK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD---LEVGKKVHCTLLDMTSGVA 302 (498)
Q Consensus 229 ~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~ 302 (498)
.+ .+...|..+...+...+++++|...|++..+.. +.+...+..+..++...|+ ++.|...+++.+......|
T Consensus 135 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 213 (272)
T 3u4t_A 135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG 213 (272)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc
Confidence 54 244566666623334458888888888887653 3345666666777776676 7778887766655443333
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 369 (498)
+.. -..+ ..+|..+...|...|++++|.+.++++.+ +.|+
T Consensus 214 ~~~-~~~~------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~ 253 (272)
T 3u4t_A 214 AKY-KDEL------------------------IEANEYIAYYYTINRDKVKADAAWKNILA--LDPT 253 (272)
T ss_dssp GGG-HHHH------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred ccc-hHHH------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcc
Confidence 321 0001 12344556666667777777777777766 3454
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=1.9e-13 Score=122.56 Aligned_cols=212 Identities=8% Similarity=-0.096 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
.++..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++.+...+ .+...+..+...
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~ 120 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--TYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc--cccHHHHHHHHH
Confidence 344455555555555555555555555432 22344555555555555555555555544433321 223444455555
Q ss_pred HHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 041942 314 YAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 391 (498)
|...|++++|...|+++.+ |+.......+..+...|++++|...+++..... +++... ..++..+...++.++|..
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLME 198 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHH
Confidence 5555555555555554432 222222223333344466666666665555421 222222 224445555555566666
Q ss_pred HHHHhHHhcCCCCC------------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHH
Q 041942 392 YFKLMRDEYNIEPN------------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 392 ~~~~~~~~~~~~p~------------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (498)
.+++... ..|. ...|...|++++|...|+++++.+|++... .+.++...|++++|++.+
T Consensus 199 ~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 6555533 2221 223336666777777777777677666433 355667777777777665
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=3.2e-12 Score=113.02 Aligned_cols=195 Identities=9% Similarity=-0.075 Sum_probs=165.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041942 202 LVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278 (498)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 278 (498)
...+..+...+...|++++|.+.|+++.+ .+...+..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788889999999999999999998763 467789999999999999999999999998764 44678888999999
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHH
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
...|++++|..++++.......+.+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999966665112233567778889999999999999999988753 46788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 356 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998843 34567788888888999999999999998877
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=3.9e-13 Score=118.09 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+.... .+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS--SAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--cchHHHHHHHHH
Confidence 345555566666666666666666666542 23455555566666666666666666644443321 233444455555
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 041942 314 YAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 390 (498)
+...|++++|...++++. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555443 1244455555556666666666666666655521 123444555555555555555555
Q ss_pred HHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 391 KYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
..++++.+ ..|+++.++..++.+|...|++++|...++++.+.
T Consensus 180 ~~~~~~~~-----------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTE-----------------------------QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------------------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55555444 44555555555566666666666666666555543
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=7.2e-13 Score=114.25 Aligned_cols=193 Identities=18% Similarity=0.028 Sum_probs=128.0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 276 (498)
++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4555666677777777777777777776553 355677777777777888888888887777653 335566777777
Q ss_pred HHhcc-----------CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHH
Q 041942 277 ACADL-----------GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIG 343 (498)
Q Consensus 277 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~ 343 (498)
++... |++++|...+++.+...+ .+...+..+...+...|++++|...|++..+ .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 77777 888888888866655442 3455666777778888888888887776432 56677888888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 344 GLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 344 ~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
+|...|++++|+..|+++.+ ..| +...+..+...+.+.|++++|...+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888887 345 46777778888888888888888887654
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=1.5e-12 Score=116.77 Aligned_cols=217 Identities=12% Similarity=-0.001 Sum_probs=176.3
Q ss_pred HhCCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCH
Q 041942 244 VLCGMNKQALEMFEEMRSVGER---PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (498)
...|++++|+..++++.+.... .+..++..+...+...|++++|...|++.+...+ .+...+..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHccCH
Confidence 3457899999999999976421 1456788889999999999999999977766543 4567788899999999999
Q ss_pred HHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 321 ERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 321 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
++|...|+++.+ .+..++..+..+|...|++++|...++++.+ ..|+.......+..+...|++++|...+++..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998763 3678999999999999999999999999998 45765555555666678899999999998887
Q ss_pred HhcCCCCC----hhHHHhhCChHHHHHHHHHHHccCCC----CCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 398 DEYNIEPN----IRHYGVHGDVELGRLANKRLLNMRKD----ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 398 ~~~~~~p~----~~~y~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
...+-.+. ...+...++.++|...++++++..|. ++.++..++.+|...|++++|...++++.+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 73222222 22333777889999999999987764 368899999999999999999999999987653
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1.2e-13 Score=131.92 Aligned_cols=262 Identities=15% Similarity=0.100 Sum_probs=157.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCC--CCC-c----chHHHHHHHHHhcCChHHHHHHHhhCCC---------CChhhH
Q 041942 173 AWSSLTAGYARRGELSMARSLFDEMP--VRD-L----VSWNVMITGYAKQGEMEKANELFNEVPK---------RDVVSW 236 (498)
Q Consensus 173 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~ 236 (498)
.+..+...+...|++++|+..|+++. .|+ . ..+..+...+...|++++|.+.|++..+ ....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 34456667788888888888888776 333 2 3567777778888888888887776542 123456
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHhccCC-----------------chHHHHHHHHH
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSV----GE-RPDDVTMLSLLTACADLGD-----------------LEVGKKVHCTL 294 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~~ 294 (498)
..+...|...|++++|...+++..+. +- .....++..+...+...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 67777777788888888877776533 11 1123355666666677777 66666666444
Q ss_pred HHhh---cC-CcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 295 LDMT---SG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 295 ~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
+... +. ......+..+...|...|++++|...+++..+ .+ ..++..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3321 11 11123444555556666666666666655442 11 124555556666666666666666655
Q ss_pred HHCCCC-C----CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCC-----
Q 041942 362 QRLKVR-P----TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKD----- 431 (498)
Q Consensus 362 ~~~~~~-p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~----- 431 (498)
.+.... . ...++..+...+...|++++|...+++... ..+.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----------------------------~~~~~~~~~ 340 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA-----------------------------IAQELGDRI 340 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------HHHHCCChH
Confidence 441100 0 023444455555555555555555555444 3221
Q ss_pred -CCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 432 -ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 432 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
...++..++.+|...|++++|...+++..+..
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 23478889999999999999999999886543
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=7.8e-13 Score=116.18 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhc
Confidence 3344444444444444444443321 234445555555555555555555555555521 123445555555555556
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 385 KVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
++++|.+.++++.+..+-.+. ...|...|++++|...++++++..|+++.++..++.++...|++++|+..++++
T Consensus 106 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666655555552111111 223335666666666666777778888899999999999999999999999999
Q ss_pred hhCC
Q 041942 460 DDSD 463 (498)
Q Consensus 460 ~~~~ 463 (498)
.+..
T Consensus 186 ~~~~ 189 (243)
T 2q7f_A 186 TEQD 189 (243)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8754
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=5.3e-12 Score=109.24 Aligned_cols=196 Identities=12% Similarity=0.006 Sum_probs=114.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.+...+ .+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHHHHHHH
Confidence 4556667777777777777777777776543 33456666666677777777777777755444322 23444455555
Q ss_pred HHHhc-CCHHHHHHHHhcCCC--C---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCC
Q 041942 313 MYAKC-GSIERAIEVFLGMRD--R---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGK 385 (498)
Q Consensus 313 ~~~~~-~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 385 (498)
.+... |++++|...++++.+ . +...+..+..++...|++++|...++++.+. .| +...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCC
Confidence 55555 666666655554433 1 1344555555555555555555555555552 23 24444455555555555
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCC-CCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 386 VEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRK-DESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
+++|...+++ +++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKK-----------------------------YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHH-----------------------------HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------------------------HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 5555555554 444556 56666666666677777777777777766543
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=3.5e-13 Score=124.50 Aligned_cols=260 Identities=13% Similarity=0.085 Sum_probs=142.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--CCC-----cchHHHHHHHHHhcCChHHHHHHHhhCCC-----C----ChhhHH
Q 041942 174 WSSLTAGYARRGELSMARSLFDEMP--VRD-----LVSWNVMITGYAKQGEMEKANELFNEVPK-----R----DVVSWN 237 (498)
Q Consensus 174 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~ 237 (498)
+......+...|++++|...|+++. .|+ ...+..+...+...|++++|.+.+++..+ + ...++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3445566777777777777777765 222 24556666777777777777777665542 1 133556
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC--------------------chHHHHHHH
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGE-RPD----DVTMLSLLTACADLGD--------------------LEVGKKVHC 292 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~ 292 (498)
.+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666667777777777777666543210 111 2245555556666666 566665554
Q ss_pred HHHHhh---cC-CcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 293 TLLDMT---SG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 293 ~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
+.+... +. ......+..+...+...|++++|...+++..+ ++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333211 10 01122344445555555555555555544431 11 1244445555555555555555555
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCC---
Q 041942 360 EMQRLKV-RPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKD--- 431 (498)
Q Consensus 360 ~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~--- 431 (498)
+..+... .++ ..++..+...+...|++++|...++ ++++..+.
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-----------------------------~a~~~~~~~~~ 298 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL-----------------------------KHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-----------------------------HHHHHHHHHTC
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHH-----------------------------HHHHHHHhcCC
Confidence 5443100 000 2233444444445555555555444 44433222
Q ss_pred ---CCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 432 ---ESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 432 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
...++..++.+|...|++++|...+++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1347889999999999999999999998764
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.9e-13 Score=130.14 Aligned_cols=281 Identities=14% Similarity=0.061 Sum_probs=134.5
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHhhccCCC--C-C----cchHHHHHHHHHhcCChHHHHHHHhcCC-----C----CC
Q 041942 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAK--M-D----VVAWSSLTAGYARRGELSMARSLFDEMP-----V----RD 201 (498)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~----~~ 201 (498)
.....+......+...|++++|...|++... | + ...+..+...+...|++++|...+++.. . ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555666667777777777777665332 1 2 1345556666666666666666665543 0 01
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCC--------------------hHHH
Q 041942 202 LVSWNVMITGYAKQGEMEKANELFNEVPK-----RD----VVSWNAMISGYVLCGM--------------------NKQA 252 (498)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~--------------------~~~a 252 (498)
..++..+...+...|++++|...+++..+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 23444445555555555555555554432 11 1244444445555555 4444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcC-CcchhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 253 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
...+.+.... ....+. ......+..+...|...|++++|...+++..
T Consensus 167 ~~~~~~al~~--------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 167 VDFYEENLSL--------------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHH--------------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444443211 000000 0112233444444445555555554444433
Q ss_pred C-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 332 D-----RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 332 ~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
+ ++ ..++..+...|...|++++|...+++..+. +..+. ..++..+...+...|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 1 11 124455555555555555555555554431 10000 2344445555555555555555555544
Q ss_pred HhcCCCCC-----------hhHHHhhCChHHHHHHHHHHHccCC------CCCchHHHHHHHHHhCCCch
Q 041942 398 DEYNIEPN-----------IRHYGVHGDVELGRLANKRLLNMRK------DESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 398 ~~~~~~p~-----------~~~y~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 450 (498)
+...-.++ ...|...|++++|...+++++++.+ ....++..++.++...|+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 41111111 2222355566666666665554422 22456777888888877653
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=1.7e-12 Score=121.32 Aligned_cols=219 Identities=8% Similarity=0.033 Sum_probs=111.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-chHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 041942 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD-LEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314 (498)
Q Consensus 236 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (498)
|..+...+...|++++|+..+++.++.. +-+...|..+..++...|+ +++|...|++.+.... -+...|..+..++
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHH
Confidence 3334444444444444444444444332 1123334444444444443 4444444433333221 2233334444444
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhh-cCCHHHH
Q 041942 315 AKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSH-AGKVEEG 389 (498)
Q Consensus 315 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~-~g~~~~a 389 (498)
...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++ +.| +...|..+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 444444444444444331 2344555555555555555555555555555 223 24455555555555 3333444
Q ss_pred -----HHHHHHhHHhcCCCCC-h-------hHHHhhC--ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC-------
Q 041942 390 -----KKYFKLMRDEYNIEPN-I-------RHYGVHG--DVELGRLANKRLLNMRKDESGDYVLLSNIYASRG------- 447 (498)
Q Consensus 390 -----~~~~~~~~~~~~~~p~-~-------~~y~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 447 (498)
++.+++.++ +.|+ . ..|...| ++++|...++++ +.+|+++.++..++.+|.+.|
T Consensus 255 ~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 244555444 3333 1 1111333 466666666666 678889999999999999875
Q ss_pred --CchHHHHHHHHh-hhCC
Q 041942 448 --EWNRVEKVRKLM-DDSD 463 (498)
Q Consensus 448 --~~~~A~~~~~~m-~~~~ 463 (498)
..++|+++|+++ .+.+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 258999999998 5543
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=2.4e-12 Score=107.84 Aligned_cols=157 Identities=12% Similarity=0.081 Sum_probs=116.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 379 (498)
+..+|..+...|.+.|++++|...|++..+ .+..+|..+..+|...|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 344556666777777777777777766542 356677777777777777777777777776632 2235556666677
Q ss_pred HhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchH
Q 041942 380 CSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (498)
+...++++.|...+.+..+ ..|+ ...|...|++++|...|+++++.+|.++.+|..++.+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 7777778888777777766 3343 3444577888888888888888999999999999999999999999
Q ss_pred HHHHHHHhhhCC
Q 041942 452 VEKVRKLMDDSD 463 (498)
Q Consensus 452 A~~~~~~m~~~~ 463 (498)
|++.|++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999998754
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=2.7e-13 Score=128.96 Aligned_cols=228 Identities=13% Similarity=0.106 Sum_probs=150.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc----hh
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSV----GERP-DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK----VL 305 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 305 (498)
++..+...|...|++++|...+++.... +-.| ...++..+...+...|++++|...+++.+.......+ ..
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 4445555555555555555555544321 1111 1234445555556666666666665444332221111 33
Q ss_pred hHHHHHHHHHhcCC--------------------HHHHHHHHhcCCC-----C----ChhHHHHHHHHHHhCCCHHHHHH
Q 041942 306 HGNALIDMYAKCGS--------------------IERAIEVFLGMRD-----R----DVSTWSTLIGGLAFHGFAEESIA 356 (498)
Q Consensus 306 ~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~ 356 (498)
.+..+...|...|+ +++|...+++..+ . ...++..+...|...|++++|..
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 45566666667777 7777666654431 1 23578889999999999999999
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----------hhHHHhhCChHHHHH
Q 041942 357 MFREMQRLKV-RPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----------IRHYGVHGDVELGRL 420 (498)
Q Consensus 357 ~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----------~~~y~~~g~~~~a~~ 420 (498)
.+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ...|...|++++|..
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9999875210 112 337788889999999999999999998762222222 334448999999999
Q ss_pred HHHHHHccCCCC------CchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 421 ANKRLLNMRKDE------SGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 421 ~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.+++++++.+.. ..++..++.+|...|++++|...+++..+.
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999875543 458899999999999999999999987643
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=5.1e-12 Score=109.36 Aligned_cols=195 Identities=11% Similarity=0.003 Sum_probs=133.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 279 (498)
..+..+...+...|++++|.+.|+++.+ .+...+..+...|...|++++|...++++.+.. +.+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 4455556666666666666666665442 345566677777777777777777777776553 335566777777777
Q ss_pred cc-CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHH
Q 041942 280 DL-GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 280 ~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
.. |++++|...+++.+.....+.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 77 777777777755554111222355666777777788888888887776542 35677888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 356 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9888888743113566666677777888888888888887765
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=2.5e-12 Score=120.12 Aligned_cols=233 Identities=10% Similarity=0.045 Sum_probs=117.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCC-hHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 041942 173 AWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGE-MEKANELFNEVPK---RDVVSWNAMISGYVL 245 (498)
Q Consensus 173 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 245 (498)
.|..+...+.+.|++++|+..++++. +.+...|..+..++...|+ +++|...|+++.+ .+...|+.+..++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 44555555555555566655555554 3334455555555555554 5555555555442 234455555555555
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHH
Q 041942 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325 (498)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (498)
.|++++|+..|+++++.. +-+...|..+..++...|++++|...+++.+.... .
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P--~----------------------- 232 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV--R----------------------- 232 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--T-----------------------
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--C-----------------------
Confidence 555555555555555442 22444455555555555555555555544443332 2
Q ss_pred HHhcCCCCChhHHHHHHHHHHh-CCCHHHH-----HHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC--CHHHHHHHHHHh
Q 041942 326 VFLGMRDRDVSTWSTLIGGLAF-HGFAEES-----IAMFREMQRLKVRPT-EITFVGVLVACSHAG--KVEEGKKYFKLM 396 (498)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g--~~~~a~~~~~~~ 396 (498)
+...|+.+..++.. .|..++| +..+++.++ +.|+ ...|..+...+...| ++++|.+.+.++
T Consensus 233 --------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 233 --------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp --------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 33444444444444 3332444 244444444 2332 344444444444444 344554444443
Q ss_pred HHhcCCCCC--------hhHHHhh--------C-ChHHHHHHHHHH-HccCCCCCchHHHHHHHHHh
Q 041942 397 RDEYNIEPN--------IRHYGVH--------G-DVELGRLANKRL-LNMRKDESGDYVLLSNIYAS 445 (498)
Q Consensus 397 ~~~~~~~p~--------~~~y~~~--------g-~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 445 (498)
+ ..|+ ...|.+. + .+++|..+|+++ ++++|.....|..++..+..
T Consensus 303 -~---~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 303 -Q---PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp -T---TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred -c---cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 2333 1122222 2 246777788887 77888888888888776654
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=1.2e-11 Score=110.69 Aligned_cols=214 Identities=12% Similarity=0.069 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC-CCCcchHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHh---
Q 041942 175 SSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAK----QGEMEKANELFNEVPK-RDVVSWNAMISGYVL--- 245 (498)
Q Consensus 175 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~--- 245 (498)
..+...+...|++++|+..|++.. +.+...+..+...|.. .+++++|.+.|++..+ .+..++..+...|..
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCC
Confidence 333334444444444444444333 2222333334444444 4444444444444332 233444445555555
Q ss_pred -CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh----
Q 041942 246 -CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD----LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK---- 316 (498)
Q Consensus 246 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 316 (498)
.+++++|...|++..+.+ +...+..+...+.. .+++++|...|++.+... +...+..+...|..
T Consensus 90 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 90 VSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSS
T ss_pred cccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCC
Confidence 555555555555555443 33444444444444 555555555553333221 22233334444444
Q ss_pred cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----cCCHH
Q 041942 317 CGSIERAIEVFLGMRD-RDVSTWSTLIGGLAF----HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH----AGKVE 387 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~ 387 (498)
.+++++|...|++..+ .+...+..+...|.. .+++++|+..+++..+.+ | ...+..+...+.+ .++++
T Consensus 163 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 163 PKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCST
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHH
Confidence 4455555554444332 233444445555555 555555555555555432 1 3334444444444 44444
Q ss_pred HHHHHHHHhHH
Q 041942 388 EGKKYFKLMRD 398 (498)
Q Consensus 388 ~a~~~~~~~~~ 398 (498)
+|.+.+++..+
T Consensus 240 ~A~~~~~~a~~ 250 (273)
T 1ouv_A 240 QAIENFKKGCK 250 (273)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=3.9e-13 Score=122.84 Aligned_cols=227 Identities=12% Similarity=0.054 Sum_probs=128.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhh------cCC
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSV-------GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT------SGV 301 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~ 301 (498)
++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++.+... ..+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4444555555555555555555555431 112223344455555555555555555554443321 112
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHhcCCC----------C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHC------
Q 041942 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRD----------R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRL------ 364 (498)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------ 364 (498)
.....+..+...|...|++++|...+++..+ + ....+..+...+...|++++|+++++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2234455555666666666666666554431 1 2345667777777788888888888777653
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc------CCCCC--------------hhHHHhhCChHHHHHHHH
Q 041942 365 KVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEY------NIEPN--------------IRHYGVHGDVELGRLANK 423 (498)
Q Consensus 365 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p~--------------~~~y~~~g~~~~a~~~~~ 423 (498)
+..|. ..++..+...+...|++++|.+.++++.+.. ...+. ...+...+.+.++...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 11332 4466677777888888888888887776510 11111 111115556666777788
Q ss_pred HHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+....|....++..++.+|...|++++|++.+++..+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88877888889999999999999999999999999875
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=1.4e-12 Score=126.38 Aligned_cols=203 Identities=9% Similarity=-0.012 Sum_probs=146.9
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc-hHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL-EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (498)
+++++..++...... +.+...+..+...+...|++ ++|...|++.+...+ .+...+..+...|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555555544332 33556666666777777777 777777755555432 33556667777777777777777777
Q ss_pred hcCC--CCChhHHHHHHHHHHhC---------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhc--------CCHH
Q 041942 328 LGMR--DRDVSTWSTLIGGLAFH---------GFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHA--------GKVE 387 (498)
Q Consensus 328 ~~~~--~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------g~~~ 387 (498)
++.. .|+...+..+...|... |++++|+..++++.+ +.|+ ...|..+..++... |+++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 7654 35566777777777777 888888888888887 3453 67777777888777 8888
Q ss_pred HHHHHHHHhHHhcCCCC---C--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHH
Q 041942 388 EGKKYFKLMRDEYNIEP---N--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 388 ~a~~~~~~~~~~~~~~p---~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (498)
+|.+.+++..+ +.| + ...|...|++++|...|+++++++|+++.++..++.++...|++++|++.+
T Consensus 239 ~A~~~~~~al~---~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH---HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH---hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888877 345 3 344447888888888899999899999999999999999999999999765
Q ss_pred HHh
Q 041942 457 KLM 459 (498)
Q Consensus 457 ~~m 459 (498)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=1.6e-12 Score=122.79 Aligned_cols=223 Identities=9% Similarity=0.011 Sum_probs=129.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc-----hhhHH
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSV----GERP-DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-----VLHGN 308 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 308 (498)
....+...|++++|...+++..+. +-.+ ...++..+...+...|+++.|...+.+.+......++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455556666666666665532 1111 1234555555566666666666666444443222221 23445
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KVRP-TEITFV 374 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~ 374 (498)
.+...|...|++++|...|++..+ ++ ..++..+..+|...|++++|+..+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 556666666666666666655442 11 135666777777777777777777766551 2212 245566
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----------hhHHHhhCC---hHHHHHHHHHHHccCCCCCchHHHHHH
Q 041942 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN----------IRHYGVHGD---VELGRLANKRLLNMRKDESGDYVLLSN 441 (498)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~y~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 441 (498)
.+...+.+.|++++|...+++..+...-.++ ...|...|+ +++|...+++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 6667777777777777777766552111111 122225555 66666666665 223334567889999
Q ss_pred HHHhCCCchHHHHHHHHhhhC
Q 041942 442 IYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.|...|++++|...+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998753
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=4.3e-10 Score=112.17 Aligned_cols=141 Identities=8% Similarity=-0.080 Sum_probs=98.3
Q ss_pred HHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCC---hHHHHHHHHHHHh
Q 041942 25 QALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQN---PLDAVFLYTQMEK 98 (498)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~ 98 (498)
+...+... +-|...|..++. ...+ .+.++.+..+|+++. +.+...|...+..-.+.|+ ++.+..+|++...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~-~~~~-~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLK-HHVS-LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHC-cCCHHHHHHHHH-HHHh-cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 44444443 468888999998 7777 889999999998886 5566778888888888888 9999999999887
Q ss_pred CC-CCCCHhhHHHHHHHhhcccch--------hhHHHHHHHHHH-hCC-CCC-hHHHHHHHHHHHh---------cCChh
Q 041942 99 CS-IKPNKFTFSFVLKACTRLLYR--------NMGFCVHGKIVK-YGF-EFN-RFVRNSLIYFHAN---------CGDLN 157 (498)
Q Consensus 99 ~~-~~p~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~g~~~ 157 (498)
.. .+|+...|..-+....+.++. +.+.++|+..+. .|. .++ ...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 53 137888888777765554443 334577777665 355 444 4688887776542 34567
Q ss_pred HHHHhhccCCC
Q 041942 158 TASVLFDGDAK 168 (498)
Q Consensus 158 ~A~~~~~~~~~ 168 (498)
.+.++|+....
T Consensus 212 ~~R~iy~raL~ 222 (679)
T 4e6h_A 212 YIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 78888876554
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=1.7e-11 Score=115.67 Aligned_cols=287 Identities=10% Similarity=0.048 Sum_probs=133.3
Q ss_pred hccCChHHHHHHHHHHHhC--CCCCCH--hhHHHHHHH--hhcccchhhHH-----------HHHHHHHHhCCCCC----
Q 041942 81 AQSQNPLDAVFLYTQMEKC--SIKPNK--FTFSFVLKA--CTRLLYRNMGF-----------CVHGKIVKYGFEFN---- 139 (498)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~--~~~p~~--~~~~~li~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~---- 139 (498)
.+.+++++|..+++++.+. .+..|. ..|-.++.. ....++.+.+. +.++.+.....+.+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 5677888888888777542 122233 233333322 11223333343 56666544221111
Q ss_pred hHHHHHHHHHHHhcCChhHHHHhhccCCC-----C----CcchHHHHHHHHHhcCChHHHHHHHhcCC-----CCC----
Q 041942 140 RFVRNSLIYFHANCGDLNTASVLFDGDAK-----M----DVVAWSSLTAGYARRGELSMARSLFDEMP-----VRD---- 201 (498)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~---- 201 (498)
...+......+...|++++|...|++... + ...++..+...+...|++++|+..+++.. .++
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 01122255566677777777777764322 1 22356666667777777777776665543 111
Q ss_pred -cchHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhC----CC-CC
Q 041942 202 -LVSWNVMITGYAKQGEMEKANELFNEVPK-----RD----VVSWNAMISGYVLCGMNKQALEMFEEMRSV----GE-RP 266 (498)
Q Consensus 202 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~-~p 266 (498)
..++..+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|...+++..+. +. +.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 12344444455555555555554444331 11 123444444555555555555555444331 11 11
Q ss_pred CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 041942 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346 (498)
Q Consensus 267 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 346 (498)
...++..+...+...|++++|...+++.+.......+.. ....+..+...|.
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI----------------------------YLSEFEFLKSLYL 314 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH----------------------------HHHHHHHHHHHHh
Confidence 223344444444444444444444433322211000000 0112344555555
Q ss_pred hCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 347 FHGF---AEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 347 ~~~~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..|+ +++|+.++++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 315 ~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 315 SGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp SSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555 44455444443 22222 33445555666666666666666666554
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=1.2e-12 Score=124.91 Aligned_cols=266 Identities=14% Similarity=0.065 Sum_probs=150.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHhhcccchhhHHHHHHHHHHhC-----CCCChHHH
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK----FTFSFVLKACTRLLYRNMGFCVHGKIVKYG-----FEFNRFVR 143 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 143 (498)
+..+...+...|++++|+..|++..+.+ +.+. ..|..+...+...|+++.|...+++..+.. .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3345556677777777777777776642 1122 356666666777777777777777665531 11223455
Q ss_pred HHHHHHHHhcCChhHHHHhhccCCC---------CCcchHHHHHHHHHhcCC-----------------hHHHHHHHhcC
Q 041942 144 NSLIYFHANCGDLNTASVLFDGDAK---------MDVVAWSSLTAGYARRGE-----------------LSMARSLFDEM 197 (498)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~ 197 (498)
..+...|...|++++|...|++... ....++..+...+...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 6666666666666666666554321 012234444444444555 44444443332
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCC----HHH
Q 041942 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR--DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPD----DVT 270 (498)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~ 270 (498)
. ++......+ ...++..+...|...|++++|...+++..+... .++ ...
T Consensus 210 l------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 210 L------------------------KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp H------------------------HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred H------------------------HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 1 111111010 123455556666666666666666665543210 011 125
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhhcCC----cchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----C----ChhH
Q 041942 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGV----AKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----R----DVST 337 (498)
Q Consensus 271 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~ 337 (498)
+..+...+...|++++|...+++.+...... .....+..+...|...|++++|...+++..+ . ...+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 5566666666777777766665444432211 1134556677777777777777777766542 1 1346
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
+..+...|...|++++|.+.+++..+
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77788889999999999999998877
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=1.7e-12 Score=119.76 Aligned_cols=266 Identities=15% Similarity=0.107 Sum_probs=151.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHhhcccchhhHHHHHHHHHHh----CCC-CChHHH
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN----KFTFSFVLKACTRLLYRNMGFCVHGKIVKY----GFE-FNRFVR 143 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 143 (498)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+++..+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344555677778888888887776642 112 245666667777777777777777766542 111 123455
Q ss_pred HHHHHHHHhcCChhHHHHhhccCCC-----CC----cchHHHHHHHHHhcCC--------------------hHHHHHHH
Q 041942 144 NSLIYFHANCGDLNTASVLFDGDAK-----MD----VVAWSSLTAGYARRGE--------------------LSMARSLF 194 (498)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~ 194 (498)
..+...|...|++++|...+++... .+ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 5666666666666666666554321 11 1134444444555555 44444444
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCC-C
Q 041942 195 DEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK--RDVVSWNAMISGYVLCGMNKQALEMFEEMRSV----GERP-D 267 (498)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~ 267 (498)
++.. .++..... ....++..+...+...|++++|...+++..+. +..+ .
T Consensus 167 ~~a~------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 222 (338)
T 3ro2_A 167 EENL------------------------SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 222 (338)
T ss_dssp HHHH------------------------HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHH------------------------HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHH
Confidence 3321 01111000 01234555566666666666666666655422 1000 1
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc----hhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----
Q 041942 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGNALIDMYAKCGSIERAIEVFLGMRD-----RD---- 334 (498)
Q Consensus 268 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~---- 334 (498)
..++..+...+...|++++|...+++.+.......+ ...+..+...+...|++++|...+++..+ .+
T Consensus 223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 225556666666777777777766554433221111 44556677777778888888777766542 11
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
..++..+...|...|++++|...++++.+
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34677788889999999999999998887
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=1e-10 Score=106.72 Aligned_cols=242 Identities=8% Similarity=0.036 Sum_probs=163.1
Q ss_pred HHHHHHHhcCC---CCCcchHHHHHHHHH-------hcCCh-------HHHHHHHhhCCC---C-ChhhHHHHHHHHHhC
Q 041942 188 SMARSLFDEMP---VRDLVSWNVMITGYA-------KQGEM-------EKANELFNEVPK---R-DVVSWNAMISGYVLC 246 (498)
Q Consensus 188 ~~A~~~~~~~~---~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~ 246 (498)
+.|...|++.. +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45666666665 445566666666554 34665 788888877653 2 445788888888888
Q ss_pred CChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHH-hcCCHHHH
Q 041942 247 GMNKQALEMFEEMRSVGERPD-DV-TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA-KCGSIERA 323 (498)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 323 (498)
|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++.+...+ .+...|........ ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888864 443 22 677788888888888888888866655433 23334433333322 26888888
Q ss_pred HHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 324 IEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRP--TEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 324 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
..+|++..+ .+...|..++..+.+.|++++|..+|++.+... +.| ....|..++....+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887653 366788888888888899999999999988853 455 35677778888888899999999988887
Q ss_pred HhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 398 DEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 398 ~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
+..+-.++... -.......+++.++|+++...+.|+
T Consensus 269 ~~~p~~~~~~~-------~~~~~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 269 TAFREEYEGKE-------TALLVDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHTTTTTSSCH-------HHHHHTTTCBTTBCSSCHHHHHTTT
T ss_pred HHcccccccch-------HHHHHHHHHhcccCCCCHHHHHhcC
Confidence 74332222210 0111122244467788877777664
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=9.2e-12 Score=125.66 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=121.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLV 378 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~ 378 (498)
+...++.|...|.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|++.|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 355666777777777777777777776552 3566777888888888888888888888877 4564 667777888
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCch
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (498)
++.+.|++++|++.+++..+ +.|+ ...|...|++++|...|+++++++|+++.++..++.+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 88888888888888888877 4565 334448888888888999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 041942 451 RVEKVRKLMDD 461 (498)
Q Consensus 451 ~A~~~~~~m~~ 461 (498)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=2.3e-09 Score=106.94 Aligned_cols=394 Identities=10% Similarity=0.028 Sum_probs=238.5
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccc---hhhHHHHHHHHHHhC-CCCChHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY---RNMGFCVHGKIVKYG-FEFNRFV 142 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 142 (498)
+-|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ .+.+..+|++.+... .+|+...
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 457778888888888888888888888888765 45566677777777777777 888888888888754 1367778
Q ss_pred HHHHHHHHHhcCCh--------hHHHHhhccC-----C-CC-CcchHHHHHHHHH---------hcCChHHHHHHHhcCC
Q 041942 143 RNSLIYFHANCGDL--------NTASVLFDGD-----A-KM-DVVAWSSLTAGYA---------RRGELSMARSLFDEMP 198 (498)
Q Consensus 143 ~~~l~~~~~~~g~~--------~~A~~~~~~~-----~-~~-~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~ 198 (498)
|...+....+.++. +.+.++|+.. . .+ +...|...+.... ..++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 87777766665543 2233566531 1 22 3345666665433 2334667777887776
Q ss_pred -CCCc---chHH---HHHHHH----------HhcCChHHHHHHHhh-------CCC--------------C--C------
Q 041942 199 -VRDL---VSWN---VMITGY----------AKQGEMEKANELFNE-------VPK--------------R--D------ 232 (498)
Q Consensus 199 -~~~~---~~~~---~l~~~~----------~~~~~~~~A~~~~~~-------~~~--------------~--~------ 232 (498)
.|.. .+|. .+.... -...+++.|...+.+ +.+ | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 2211 1221 111110 001123334444432 111 0 0
Q ss_pred hhhHHHHHHHHHhCC-------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHH-HHHHHHHHhhcCCcch
Q 041942 233 VVSWNAMISGYVLCG-------MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK-KVHCTLLDMTSGVAKV 304 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 304 (498)
...|...+..--..+ ..+.+..+|++.+..- +-....|...+.-+...|+.+.|. .+|+..+... +.+.
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~s~ 378 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PNSA 378 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CCCH
Confidence 123444444333322 1234556677776542 346666777777777778888885 8886555422 3455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCC-------------CC------------hhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 305 LHGNALIDMYAKCGSIERAIEVFLGMRD-------------RD------------VSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
..+..++....+.|++++|.++|+++.+ |+ ...|...+....+.|+.+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666777777788888888888876653 21 2357777777777788888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHhHHhcCCCCCh-hHHH----hhCChHHHHHHHHHHHccCCC--
Q 041942 360 EMQRLKVRPTEITFVGVLVACSHA-GKVEEGKKYFKLMRDEYNIEPNI-RHYG----VHGDVELGRLANKRLLNMRKD-- 431 (498)
Q Consensus 360 ~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~~-~~y~----~~g~~~~a~~~~~~~~~~~~~-- 431 (498)
++.+.-..+....|...+..-.+. ++.+.|..+|+...+.++-.|.. ..|. ..|+.+.|+.+|++++...|+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 887741012233443333322333 45788888888887754443331 1222 678888888888888877663
Q ss_pred -CCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 432 -ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 432 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
....|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345788888888888888888888888876544
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.2e-10 Score=97.07 Aligned_cols=159 Identities=13% Similarity=-0.004 Sum_probs=132.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 380 (498)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34456677888899999999999998875 367788889999999999999999999998842 33577888888999
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHH
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (498)
...|++++|.+.++++.+..+..+. ...|...|++++|...++++++..|.++.++..++.++...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998883222111 34455899999999999999999999999999999999999999999999
Q ss_pred HHHhhhCC
Q 041942 456 RKLMDDSD 463 (498)
Q Consensus 456 ~~~m~~~~ 463 (498)
++++.+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99997654
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=1.3e-10 Score=97.03 Aligned_cols=162 Identities=13% Similarity=0.079 Sum_probs=100.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHH
Q 041942 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311 (498)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 311 (498)
+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...+........ .+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 34556666666666677777777766666543 23455666666666666666666666644443332 2333444555
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHH
Q 041942 312 DMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVE 387 (498)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~ 387 (498)
..+...++++.|...+.+.. ..+...+..+...|...|++++|++.|++..+ +.| +..++..+..++.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHH
Confidence 56666666666666665543 23456666677777777777777777777766 334 3566666677777777777
Q ss_pred HHHHHHHHhHH
Q 041942 388 EGKKYFKLMRD 398 (498)
Q Consensus 388 ~a~~~~~~~~~ 398 (498)
+|.+.+++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777665
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=2.2e-09 Score=100.81 Aligned_cols=195 Identities=11% Similarity=0.031 Sum_probs=119.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHH--
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGER----PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN-- 308 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 308 (498)
.+..+...+...|++++|...+++....... ....++..+...+...|++++|...+++.............+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 4455666667777777777777766543211 1234556666777777888888887755544322111111111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCH-HHH
Q 041942 309 ---ALIDMYAKCGSIERAIEVFLGMRDRD-------VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KVRPTE-ITF 373 (498)
Q Consensus 309 ---~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~ 373 (498)
..+..+...|++++|...+++...++ ...+..+...+...|++++|...+++.... |..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 23344678899999999988776532 124567788899999999999999887652 222222 255
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCC
Q 041942 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~ 431 (498)
..+..++...|+.++|...+++......-......+...| +....+++.+....|.
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 6667788899999999999988876211111123333333 4455555655555543
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=1.2e-10 Score=109.65 Aligned_cols=220 Identities=9% Similarity=0.031 Sum_probs=123.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc-----chhhHHH
Q 041942 240 ISGYVLCGMNKQALEMFEEMRSVGE-RPD----DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-----KVLHGNA 309 (498)
Q Consensus 240 ~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 309 (498)
...+...|++++|...|++..+... .++ ..++..+...+...|+++.|...+.+.+......+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344555666666666655543210 011 23444555555566666666655544443322111 1334455
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 041942 310 LIDMYAKCGSIERAIEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFREMQR-----LKVRPTEITFVG 375 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 375 (498)
+...|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|+..+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 55666666666666666554432 11 23566666677777777777777776655 22 122555666
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----------hhHHHhhCC---hHHHHHHHHHHHccCCCCCchHHHHHHH
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPN----------IRHYGVHGD---VELGRLANKRLLNMRKDESGDYVLLSNI 442 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~y~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 442 (498)
+...+.+.|++++|...+++..+...-.++ ...|...++ +.+|...+++. ...|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 666777777777777777776662222111 112224455 56666666652 1223334577889999
Q ss_pred HHhCCCchHHHHHHHHhhh
Q 041942 443 YASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~ 461 (498)
|...|++++|...|++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998864
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=5.6e-10 Score=101.75 Aligned_cols=211 Identities=11% Similarity=-0.000 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc-------ccch-------hhHHHHHHHHHHhCCCCChHHHHHHHHHHHh
Q 041942 87 LDAVFLYTQMEKCSIKPNKFTFSFVLKACTR-------LLYR-------NMGFCVHGKIVKYGFEFNRFVRNSLIYFHAN 152 (498)
Q Consensus 87 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (498)
++|..+|++..... +-+...|..+...+.. .|+. ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555555555431 2344445444444432 2443 5555555555552112234455555555555
Q ss_pred cCChhHHHHhhccCCC--C-Ccc-hHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHH-hcCChHHHHHH
Q 041942 153 CGDLNTASVLFDGDAK--M-DVV-AWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYA-KQGEMEKANEL 224 (498)
Q Consensus 153 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~-~~~~~~~A~~~ 224 (498)
.|++++|.++|++... | +.. .|..++..+.+.|++++|..+|++.. +.+...|........ ..|+.++|.++
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555554332 1 222 45555555555555555555555544 122222322222211 24556666666
Q ss_pred HhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhccCCchHHHHHHHHHHHhh
Q 041942 225 FNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-ERP--DDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298 (498)
Q Consensus 225 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 298 (498)
|++..+ .+...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.+.|..++++.+...
T Consensus 192 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 555542 244556666666666666666666666666542 233 23455555555556666666666664444433
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=3.1e-10 Score=106.79 Aligned_cols=161 Identities=11% Similarity=0.044 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCchHHHHHHHHHHHh---hcCCcchhh
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSV----GERP-DDVTMLSLLTACADLGDLEVGKKVHCTLLDM---TSGVAKVLH 306 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~ 306 (498)
+++.+...|...|++++|...+++..+. +..+ ...++..+..++...|++++|...+++.+.. .+.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444555555555555555555444321 1111 1224444555555555555555555443331 011222444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-------C-ChhHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCC-HHHHH
Q 041942 307 GNALIDMYAKCGSIERAIEVFLGMRD-------R-DVSTWSTLIGGLAFHGF---AEESIAMFREMQRLKVRPT-EITFV 374 (498)
Q Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~m~~~~~~p~-~~~~~ 374 (498)
+..+...|.+.|++++|...+++..+ + ....+..+...|...++ +.+|+.++++ .+..|+ ...+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHH
Confidence 45555556666666666555554321 1 11234444445555555 5555555544 222222 33445
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 375 GVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+...|...|++++|...+++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666667777777766666544
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=1.1e-09 Score=95.02 Aligned_cols=201 Identities=8% Similarity=-0.000 Sum_probs=136.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHH
Q 041942 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311 (498)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 311 (498)
|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++.+...+ .+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY--NLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--SHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc--chHHHHHHHH
Confidence 44566667777777777777777777777665335666666677777777777777777755554332 3455666677
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--C-Ch-------hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 041942 312 DMYAKCGSIERAIEVFLGMRD--R-DV-------STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT---EITFVGVLV 378 (498)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~~~~--~-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~ 378 (498)
..|...|++++|...|++..+ | +. ..|..+...+...|++++|++.|+++++ ..|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 777777777777777776552 2 33 4577788888889999999999999888 4565 456666666
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH-----hhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
.+...| ...++++.. .+ ..+...|. ..+.+++|...++++++++|+++.+...+..+.
T Consensus 162 ~~~~~~-----~~~~~~a~~-~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATP-LA-SSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHH-----HHHHHHHGG-GT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHh-cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 665544 334444444 11 11222222 567789999999999999999988877776654
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=3.5e-11 Score=108.00 Aligned_cols=194 Identities=13% Similarity=0.064 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhh------cCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-------C--
Q 041942 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMT------SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-------R-- 333 (498)
Q Consensus 269 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-- 333 (498)
.++..+...+...|++++|...+++.+... ..+.....+..+...|...|++++|...+++..+ +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344444445555555555555554333321 1122233445555555555666555555554331 1
Q ss_pred --ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc----
Q 041942 334 --DVSTWSTLIGGLAFHGFAEESIAMFREMQRL------KVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEY---- 400 (498)
Q Consensus 334 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 400 (498)
...++..+...|...|++++|...++++.+. +-.|. ..++..+...+...|++++|...++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2346677777778888888888888777663 11232 4567777788888888888888888876620
Q ss_pred --CCCCC-hhHHH-------------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 401 --NIEPN-IRHYG-------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 401 --~~~p~-~~~y~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
...+. ...+. ....+..+...++......|....++..++.+|...|++++|..++++..+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 11111 1222344444444443444555678999999999999999999999998753
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=7.9e-11 Score=114.16 Aligned_cols=220 Identities=12% Similarity=0.010 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccch-hhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhc
Q 041942 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR-NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD 164 (498)
Q Consensus 86 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 164 (498)
++++++.++...... +.+...+..+...+...|++ ++|...|++.++.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555554431 23555666666666666666 77777776666653 2345556666666666666666666655
Q ss_pred cCCC--CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHH
Q 041942 165 GDAK--MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAM 239 (498)
Q Consensus 165 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 239 (498)
+... |+...+..+...+...+.- ....+.|++++|.+.|++..+ .+...|..+
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTD----------------------SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCS----------------------CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccC----------------------ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4332 3333444444444444000 000000444555555544432 244556666
Q ss_pred HHHHHhC--------CChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHH
Q 041942 240 ISGYVLC--------GMNKQALEMFEEMRSVGER--PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309 (498)
Q Consensus 240 ~~~~~~~--------g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (498)
..+|... |++++|+..|++..+.... -+...+..+..++...|++++|...|++.+...+ .+...+..
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~a~~~ 297 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP--AWPEPQQR 297 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 6666665 6677777777777664210 3566777777777777777777777755555443 23445566
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC
Q 041942 310 LIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
+..++...|++++|.+.+.++.
T Consensus 298 l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 7777777888888888777764
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=2.3e-10 Score=104.22 Aligned_cols=226 Identities=16% Similarity=0.169 Sum_probs=126.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCC--------CC---cchHHHHHHHHHhcCChHHHHHHHhhCCC-------C-
Q 041942 171 VVAWSSLTAGYARRGELSMARSLFDEMPV--------RD---LVSWNVMITGYAKQGEMEKANELFNEVPK-------R- 231 (498)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~- 231 (498)
..++..+...+...|++++|..+++++.. .+ ...+..+...+...|++++|...++++.+ +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34577777888888888888888877651 11 23566667777777777777777766542 1
Q ss_pred ---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCCchHHHHHHHHHHHhh---
Q 041942 232 ---DVVSWNAMISGYVLCGMNKQALEMFEEMRSV------GERP-DDVTMLSLLTACADLGDLEVGKKVHCTLLDMT--- 298 (498)
Q Consensus 232 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--- 298 (498)
...++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|..++++.+...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 2345666777777777777777777776643 2122 23455666666777777777777775554431
Q ss_pred ---cCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC------------------ChhHHHHHHHHHHhCCCHHHHHHH
Q 041942 299 ---SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR------------------DVSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 299 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
..+.....+..+...|...|++++|...++++.+. ....+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 11223345556666666777777776666654420 011122222233333444444445
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 358 FREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 358 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
++..... .| ...++..+..+|.+.|++++|.+.+++..+
T Consensus 267 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5544431 22 245566666666777777777777666654
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=2.2e-10 Score=99.39 Aligned_cols=191 Identities=10% Similarity=0.021 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHH
Q 041942 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLI 342 (498)
Q Consensus 266 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~ 342 (498)
.++..+......+...|++++|...|++.+...+ .++...+..+..++...|++++|...|++..+ | +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3456666667777777777777777755554432 23344444466666677777777777665542 2 345666666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC---hhHHHh
Q 041942 343 GGLAFHGFAEESIAMFREMQRLKVRPT-E-------ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---IRHYGV 411 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~ 411 (498)
.+|...|++++|+..+++..+ ..|+ . ..|..+...+...|++++|.+.++++.+ ..|+ ...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 677777777777777777666 3343 3 2344444555555555555555555544 3343 122222
Q ss_pred hCC--hHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 412 HGD--VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 412 ~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
.|. ...+...++++..+.+.+...|... .....+.+++|+..+++..+...
T Consensus 159 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 221 2233334444444444443332222 12233445999999999987544
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=2.8e-09 Score=94.54 Aligned_cols=240 Identities=13% Similarity=0.048 Sum_probs=139.6
Q ss_pred HHhcCChHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 041942 181 YARRGELSMARSLFDEMPVRDLV-SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259 (498)
Q Consensus 181 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 259 (498)
..-.|++..++.-...+.+.+.. .-..+.++|...|+..... ...|....+..+...+ ..+ |...|+++
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~~~-~~~----a~~~l~~l 92 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLYVQFL-DTK----NIEELENL 92 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHHHHHH-TTT----CCHHHHHT
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHHHHHh-ccc----HHHHHHHH
Confidence 34456666666654444422221 2223346666666655310 1123333333333332 322 66777777
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C----
Q 041942 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R---- 333 (498)
Q Consensus 260 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---- 333 (498)
...+ .++..++..+..++...|++++|.+++.+.+......-+...+..++..+.+.|+.+.|.+.+++|.+ |
T Consensus 93 ~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~ 171 (310)
T 3mv2_B 93 LKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS 171 (310)
T ss_dssp TTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc
Confidence 6655 45566666777778888888888888844433322123556666778888888888888888887764 3
Q ss_pred -ChhHHHHHHHH--HHh--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC----C--
Q 041942 334 -DVSTWSTLIGG--LAF--HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN----I-- 402 (498)
Q Consensus 334 -~~~~~~~l~~~--~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~-- 402 (498)
+..+...++.+ ... .+++++|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.+..+ .
T Consensus 172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~ 249 (310)
T 3mv2_B 172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKEN 249 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHH
T ss_pred cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccccc
Confidence 13445555555 222 33889999999998763 46544444455588888999999998887655210 0
Q ss_pred -CCC-hhHH-------HhhCChHHHHHHHHHHHccCCCCCch
Q 041942 403 -EPN-IRHY-------GVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 403 -~p~-~~~y-------~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
.|+ ..++ ...|+ +|.++++++.+..|+++.+
T Consensus 250 ~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 250 AVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 133 1111 13344 6666666666666666544
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=3.2e-09 Score=88.29 Aligned_cols=157 Identities=18% Similarity=0.133 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 280 (498)
.+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~------- 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATV------- 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH-------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH-------
Confidence 344445555555666666666655543 233445555555555555555555555554432 223333444
Q ss_pred cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHH
Q 041942 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
+...+...|++++|...++++. ..+...+..+...+...|++++|...
T Consensus 82 -----------------------------~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 82 -----------------------------LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp -----------------------------HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------------------HHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 4444444444444444444332 12445566666777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 358 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 133 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77776642 23456677777777777777777777777665
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=1.4e-08 Score=95.18 Aligned_cols=258 Identities=9% Similarity=0.041 Sum_probs=184.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCCH----HHH
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVPK----RDV----VSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDD----VTM 271 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~----~~~ 271 (498)
.......+...|++++|...+++... .+. .+++.+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455567789999999999877542 222 2466677888899999999999998764311 1122 335
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhh---cCC--c-chhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C------ChhH
Q 041942 272 LSLLTACADLGDLEVGKKVHCTLLDMT---SGV--A-KVLHGNALIDMYAKCGSIERAIEVFLGMRD--R------DVST 337 (498)
Q Consensus 272 ~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~------~~~~ 337 (498)
..+...+...|++++|...+++.+... +.. | ....+..+...+...|++++|...+++... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667778899999999999997766543 221 2 234556678889999999999999986542 1 1346
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC------
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFV-----GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------ 405 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------ 405 (498)
+..+...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|...+++... ....+.
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK-PEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC-CCCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC-CCCCcchhhHHH
Confidence 77888999999999999999999876321221 11222 233447789999999999999876 221111
Q ss_pred ----hhHHHhhCChHHHHHHHHHHHccCCCCCc------hHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 406 ----IRHYGVHGDVELGRLANKRLLNMRKDESG------DYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 406 ----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
...+...|++++|...++++++..+.... ++..++.++...|++++|...+++.....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 12344889999999999999987655433 34556888999999999999999998753
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=1.7e-09 Score=97.61 Aligned_cols=123 Identities=7% Similarity=-0.149 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCCh--
Q 041942 337 TWSTLIGGLAFH-GFAEESIAMFREMQRLKVRPT-------EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI-- 406 (498)
Q Consensus 337 ~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-- 406 (498)
+++.+...|... |++++|+..|++..+. .|+ ..++..+...+.+.|++++|...++++.+...-.+..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 456666667665 7777777777766652 121 2356666677777777777777777776621111111
Q ss_pred ----------hHHHhhCChHHHHHHHHHHHccCCCCCc-----hHHHHHHHHH--hCCCchHHHHHHHHhhh
Q 041942 407 ----------RHYGVHGDVELGRLANKRLLNMRKDESG-----DYVLLSNIYA--SRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 407 ----------~~y~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 461 (498)
..|...|++++|...++++++++|.... .+..++.++. ..+++++|+..|+++..
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 1122667777777777777777776543 2445566664 45678888888877644
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=2.2e-09 Score=108.39 Aligned_cols=161 Identities=11% Similarity=0.056 Sum_probs=111.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
..+|+.+...|.+.|++++|+..|++.++.. +-+..++..+..++.+.|++++|...|++.++... .+...+..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 3456666777777777777777777766542 22455666677777777777777777755554432 33555666777
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHH
Q 041942 313 MYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEE 388 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 388 (498)
+|...|++++|++.|++..+ .+...|+.+..+|...|++++|++.|++.++ +.|+ ...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHH
Confidence 77777777777777766542 3566778888888888888888888888877 4564 6677778888888888888
Q ss_pred HHHHHHHhHH
Q 041942 389 GKKYFKLMRD 398 (498)
Q Consensus 389 a~~~~~~~~~ 398 (498)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777655
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=3.2e-10 Score=91.08 Aligned_cols=133 Identities=9% Similarity=-0.015 Sum_probs=92.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCH
Q 041942 311 IDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKV 386 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 386 (498)
..++...|++++|+..++..... +...+..+...|...|++++|++.|++.++ +.| +..+|..+..++.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 33444556677777777665543 334556677777788888888888888777 445 366777777777888888
Q ss_pred HHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHH-HHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 387 EEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRL-ANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
++|...+++..+ +.|+ ...|.+.|++++|.+ .++++++++|+++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888877776 4554 333446777766554 4588888899999999999888888875
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=1.9e-09 Score=97.31 Aligned_cols=211 Identities=10% Similarity=0.034 Sum_probs=144.9
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCCchHHHHHH
Q 041942 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV----GERPD-DVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
++++|...|++. ...|...|++++|...|.+..+. |-+++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366676666553 55677788888888888776532 32222 457778888888888888888888
Q ss_pred HHHHHhhcCCcc----hhhHHHHHHHHHhc-CCHHHHHHHHhcCCC--C---C----hhHHHHHHHHHHhCCCHHHHHHH
Q 041942 292 CTLLDMTSGVAK----VLHGNALIDMYAKC-GSIERAIEVFLGMRD--R---D----VSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 292 ~~~~~~~~~~~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~---~----~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
++.+.......+ ..++..+...|... |++++|+..|++..+ | + ..++..+...+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 666554321111 34667788888886 999999988887653 1 1 34688889999999999999999
Q ss_pred HHHHHHCCCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChh-------------HHH--hhCChH
Q 041942 358 FREMQRLKVRPTE------ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR-------------HYG--VHGDVE 416 (498)
Q Consensus 358 ~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------------~y~--~~g~~~ 416 (498)
|++..+....... ..+..+..++...|++++|...+++..+ +.|+.. .|. ..++++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999884322211 1566777888899999999999999866 555411 111 446788
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHH
Q 041942 417 LGRLANKRLLNMRKDESGDYVLLSN 441 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~l~~ 441 (498)
+|...|++++.++|.....+..+-.
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHHHHHHH
Confidence 8888888888877766544444433
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.06 E-value=3.1e-09 Score=91.88 Aligned_cols=184 Identities=13% Similarity=-0.038 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc-hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-h---hHHHH
Q 041942 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-V---STWST 340 (498)
Q Consensus 268 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~ 340 (498)
...+..+...+...|++++|...|++.+...+..+. ...+..+..+|.+.|++++|...|+++.+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666777788888888888666655433222 34555677777788888888888777653 32 1 13444
Q ss_pred HHHHHHh------------------CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 341 LIGGLAF------------------HGFAEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 341 l~~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
+..++.. .|++++|+..|+++++. .|+. ...........-.+....+. ..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~----~~----- 152 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYE----YS----- 152 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHH----HH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHH----HH-----
Confidence 4444443 45666777777776663 3432 22211111000000000000 00
Q ss_pred CCCChhHHHhhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 402 IEPNIRHYGVHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 402 ~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
-...|.+.|++++|...|+++++..|+++ .++..++.+|.+.|++++|++.++.+...+..
T Consensus 153 ---~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 153 ---VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 02356689999999999999999999986 57999999999999999999999999887653
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=4.7e-09 Score=82.08 Aligned_cols=123 Identities=16% Similarity=0.259 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRH 408 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~ 408 (498)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .|+ ...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 34455555566666666666666655532 123445555555666666666666666665552 222 223
Q ss_pred HHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 409 YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 409 y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
|...|++++|...++++++..|.++.++..++.++...|++++|...++++.+..
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 3366667777777777777788888899999999999999999999999987644
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=2.8e-09 Score=95.37 Aligned_cols=214 Identities=15% Similarity=0.127 Sum_probs=118.8
Q ss_pred hcCChHHHHHHHhcCC-------CCC----cchHHHHHHHHHhcCChHHHHHHHhhCCC-----------CChhhHHHHH
Q 041942 183 RRGELSMARSLFDEMP-------VRD----LVSWNVMITGYAKQGEMEKANELFNEVPK-----------RDVVSWNAMI 240 (498)
Q Consensus 183 ~~~~~~~A~~~~~~~~-------~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~l~ 240 (498)
..|++++|+.++++.. .++ ..++..+...+...|++++|...++++.+ ....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455555555554443 122 34666777777777777777777766542 1234566777
Q ss_pred HHHHhCCChHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHhccCCchHHHHHHHHHHHh------hcCCcchhhH
Q 041942 241 SGYVLCGMNKQALEMFEEMRSV------GE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM------TSGVAKVLHG 307 (498)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~ 307 (498)
..|...|++++|...+.+.... .- +....++..+...+...|++++|...+++.+.. ...+.....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777777776643 11 123455666677777777777777777555544 1112234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----------C-ChhHHHHHHHHHHhCCCHHHHH------HHHHHHHHCCCCC-
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD-----------R-DVSTWSTLIGGLAFHGFAEESI------AMFREMQRLKVRP- 368 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~A~------~~~~~m~~~~~~p- 368 (498)
..+...|...|++++|...+++..+ + ....|..+...+...+....+. ..++.... ..|
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHH
Confidence 6667777777777777777665432 1 1223333333333333222221 11111110 112
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...++..+...+...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234566666777777777777777776654
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=7.6e-09 Score=85.58 Aligned_cols=149 Identities=10% Similarity=-0.029 Sum_probs=100.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhhc
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA-CSHA 383 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~ 383 (498)
..+...+...|++++|...|++..+ .+...+..+...+...|++++|+..++++... .|+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3455666777777777777777764 35567777777777777777777777776653 3433322221111 1222
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCC--CchHHHHHHHHHhCCCchHHH
Q 041942 384 GKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDE--SGDYVLLSNIYASRGEWNRVE 453 (498)
Q Consensus 384 g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 453 (498)
+....|...+++..+ ..|+ ...|...|++++|...|+++++.+|+. +.++..++.++...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 233346677777666 3444 334447788888888888888888865 569999999999999999999
Q ss_pred HHHHHhhh
Q 041942 454 KVRKLMDD 461 (498)
Q Consensus 454 ~~~~~m~~ 461 (498)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=8e-09 Score=91.56 Aligned_cols=184 Identities=9% Similarity=-0.018 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc-hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C----ChhHHH
Q 041942 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRD--R----DVSTWS 339 (498)
Q Consensus 267 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~ 339 (498)
+...+......+...|++++|...|++.+...+..+. ...+..+..+|.+.|++++|...|+++.+ | ....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444445555555666666666666444443322211 33344455555555555555555554432 1 122344
Q ss_pred HHHHHHHh--------CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 041942 340 TLIGGLAF--------HGFAEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410 (498)
Q Consensus 340 ~l~~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~ 410 (498)
.+..++.. .|++++|+..|+++++. .|+. .....+.......+... ...+.. ...|.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~--~~~~~l----------a~~~~ 159 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLA--RKQYEA----------ARLYE 159 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHH--HHHHHH----------HHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHH--HHHHHH----------HHHHH
Confidence 44555555 55555555555555542 2321 11111100000000000 000000 23455
Q ss_pred hhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhC----------CCchHHHHHHHHhhhCCC
Q 041942 411 VHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASR----------GEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~ 464 (498)
..|++++|...|+++++..|+++ .++..++.+|... |++++|+..|+++.+...
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 78999999999999998888854 4788999999877 889999999999987543
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=7.9e-09 Score=91.61 Aligned_cols=198 Identities=13% Similarity=0.026 Sum_probs=130.1
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc-hh
Q 041942 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD---DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VL 305 (498)
Q Consensus 230 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 305 (498)
..+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++...|++++|...|+..+...+..+. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3466778888999999999999999999998764 223 567888899999999999999999777776543332 45
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHhcCCC--C-ChhHH-----------------HHHHHHHHhCCCHHHHHHH
Q 041942 306 HGNALIDMYAK--------CGSIERAIEVFLGMRD--R-DVSTW-----------------STLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 306 ~~~~l~~~~~~--------~~~~~~A~~~~~~~~~--~-~~~~~-----------------~~l~~~~~~~~~~~~A~~~ 357 (498)
.+..+..++.. .|++++|...|+++.+ | +...+ ..+...|...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 56678888888 9999999999998763 3 23333 3345556666666666666
Q ss_pred HHHHHHCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCC
Q 041942 358 FREMQRLKVRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDES 433 (498)
Q Consensus 358 ~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~ 433 (498)
|+++++. .|+ ...+..+..++...|+.+.+. ...|++++|...|+++++..|+++
T Consensus 171 ~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~-------------------~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 171 YEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRA-------------------RQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGG-------------------GHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhh-------------------cccchHHHHHHHHHHHHHHCCCCh
Confidence 6666652 232 223444444444331110000 123666777777777777777775
Q ss_pred c---hHHHHHHHHHhCCCc
Q 041942 434 G---DYVLLSNIYASRGEW 449 (498)
Q Consensus 434 ~---~~~~l~~~~~~~g~~ 449 (498)
. +...+..++...|++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3 333444444443333
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=4e-09 Score=106.94 Aligned_cols=164 Identities=10% Similarity=-0.003 Sum_probs=98.3
Q ss_pred hccCCchHHHHHHHHHHH-----h-hcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCC
Q 041942 279 ADLGDLEVGKKVHCTLLD-----M-TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHG 349 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~-----~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 349 (498)
...|++++|...+++.+. . ...+.+...+..+...+...|++++|...|+++.+ .+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 556666666666644440 0 11123344555566666666777777766666553 24556666666667777
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHH
Q 041942 350 FAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRL 420 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~ 420 (498)
++++|++.|+++.+ +.| +...+..+..++.+.|++++ .+.++++.+ +.|+ ...|...|++++|..
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777666 334 35556666666667777776 666666665 3444 223336677777777
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 421 ANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
.|+++++++|.+..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777665444
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=1.9e-08 Score=100.05 Aligned_cols=153 Identities=9% Similarity=-0.032 Sum_probs=110.8
Q ss_pred cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHH
Q 041942 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
.|++++|...+++.+.... .+...+..+...+...|++++|.+.|++..+ .+...|..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788899998866655432 3466778888899999999999999987654 3577888999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhh---CChHHHHHHHHHH
Q 041942 358 FREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVH---GDVELGRLANKRL 425 (498)
Q Consensus 358 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~---g~~~~a~~~~~~~ 425 (498)
+++..+. .| +...+..+..++.+.|++++|.+.+++..+ ..|+ ...|... |++++|...++++
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999884 45 467888888999999999999999999888 3454 3334477 9999999999999
Q ss_pred HccCCCCCchHHHHH
Q 041942 426 LNMRKDESGDYVLLS 440 (498)
Q Consensus 426 ~~~~~~~~~~~~~l~ 440 (498)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999999888887776
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=1.6e-09 Score=86.95 Aligned_cols=118 Identities=10% Similarity=-0.010 Sum_probs=97.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHh
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGV 411 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~ 411 (498)
|...+...|++++|+..+++... ..|+ ...+..+...|.+.|++++|++.+++.++ +.|+ ...|..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 45556677899999999999876 3454 55667788999999999999999999988 5666 445559
Q ss_pred hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHH-HHHhhhCC
Q 041942 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV-RKLMDDSD 463 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~ 463 (498)
.|++++|...|+++++++|+++.+|..++.+|.+.|++++|.+. +++..+..
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999887765 58887644
No 99
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.87 E-value=1.3e-07 Score=80.74 Aligned_cols=124 Identities=9% Similarity=-0.041 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 387 (498)
..+...+...|++++|...|++...++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 4567778889999999999999988889999999999999999999999999998843 335778888999999999999
Q ss_pred HHHHHHHHhHHhcCCCC-------------C--------hhHHHhhCChHHHHHHHHHHHccCCCC
Q 041942 388 EGKKYFKLMRDEYNIEP-------------N--------IRHYGVHGDVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 388 ~a~~~~~~~~~~~~~~p-------------~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~ 432 (498)
+|.+.++++.+..+-.+ . ...|...|++++|...+++++++.|++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999988322222 1 223336677777777777777776664
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=1.9e-08 Score=90.47 Aligned_cols=164 Identities=9% Similarity=-0.009 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHH-HH
Q 041942 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTWS-TL 341 (498)
Q Consensus 265 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l 341 (498)
+.+...+..+...+...|++++|...|++.+...+ .+...+..+...+...|++++|...++++.. |+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 33445555666666677777777777755555443 2334455666667777777777777776653 3322222 12
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHH
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRL 420 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~ 420 (498)
...+...++.++|+..+++.... .| +...+..+...+...|++++|...+.++.+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~---------------------- 247 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLR---------------------- 247 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh----------------------
Confidence 22344556666666666666663 34 355566666666666666666666666555
Q ss_pred HHHHHHccCCCC--CchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 421 ANKRLLNMRKDE--SGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 421 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+|++ ..++..++.+|...|+.++|...|++...
T Consensus 248 -------~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 248 -------XDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp -------HCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -------cccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 46666 77899999999999999999999988653
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=7e-09 Score=105.15 Aligned_cols=144 Identities=10% Similarity=0.011 Sum_probs=127.3
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhh
Q 041942 315 AKCGSIERAIEVFLGMR-----------DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSH 382 (498)
Q Consensus 315 ~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 382 (498)
...|++++|.+.+++.. ..+...+..+..+|...|++++|+..|+++.+ ..| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 67899999999998765 23567899999999999999999999999998 445 57788889999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 383 AGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
.|++++|.+.|+++.+ +.|+ ...|...|++++ ...|+++++++|++..+|..++.+|.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988 4555 445559999999 999999999999999999999999999999999999
Q ss_pred HHHHhhhCCC
Q 041942 455 VRKLMDDSDI 464 (498)
Q Consensus 455 ~~~~m~~~~~ 464 (498)
.|++..+.+.
T Consensus 556 ~~~~al~l~P 565 (681)
T 2pzi_A 556 TLDEVPPTSR 565 (681)
T ss_dssp HHHTSCTTST
T ss_pred HHHhhcccCc
Confidence 9999876543
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=9.6e-08 Score=78.84 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
.+..+...+...|+.++|...|++.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 3444444444444444444444443
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.83 E-value=3e-08 Score=79.14 Aligned_cols=92 Identities=8% Similarity=0.033 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSN 441 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 441 (498)
...+..+...+.+.|++++|...|+++.+ +.|+ ...|...|++++|...|+++++++|+++.+|..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 34555666677777777777777777766 3444 333447777888888888888889999999999999
Q ss_pred HHHhCCCchHHHHHHHHhhhCCC
Q 041942 442 IYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+|...|++++|+..|++..+...
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999987653
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=3.7e-08 Score=76.15 Aligned_cols=102 Identities=7% Similarity=-0.014 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------h
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------I 406 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~ 406 (498)
..+......|.+.|++++|++.|++.++ +.| +...|..+..++.+.|++++|+..+++.++ +.|+ .
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIR---LDSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH---hhhhhhHHHHHHH
Confidence 3455666777777777777777777776 334 466666677777777777777777776666 3333 2
Q ss_pred hHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 041942 407 RHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442 (498)
Q Consensus 407 ~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 442 (498)
..|...|++++|...|+++++++|+++.++..|..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 233355566666666666666666666666555443
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.82 E-value=4.8e-07 Score=80.29 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRS 261 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 261 (498)
++..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3334444555555555555555544221 223444445555555555555555555543
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=8e-08 Score=86.33 Aligned_cols=59 Identities=8% Similarity=-0.028 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 041942 140 RFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP 198 (498)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 198 (498)
...+..+...+...|++++|...|++... .+...+..+...+.+.|++++|...++++.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 33444444444444444444444443221 222334444444444444444444444443
No 107
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=3.3e-07 Score=82.63 Aligned_cols=152 Identities=8% Similarity=-0.026 Sum_probs=104.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC-----C----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 041942 310 LIDMYAKCGSIERAIEVFLGMRDR-----D----VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR-PT----EITFVG 375 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 375 (498)
.+..+...|++++|..++++..+. + ...+..+...+...+++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677778888888887765431 1 113334666666777888888888888773222 22 235777
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhc----CCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCC------CchHH
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEY----NIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDE------SGDYV 437 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 437 (498)
+...|...|++++|...++++.+.. +..+. ...|.+.|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7788888888888888888877421 11111 333448888888888888888665432 46899
Q ss_pred HHHHHHHhCCC-chHHHHHHHHhhh
Q 041942 438 LLSNIYASRGE-WNRVEKVRKLMDD 461 (498)
Q Consensus 438 ~l~~~~~~~g~-~~~A~~~~~~m~~ 461 (498)
.++.+|...|+ +++|++.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999988764
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.80 E-value=1.3e-07 Score=73.66 Aligned_cols=128 Identities=16% Similarity=0.264 Sum_probs=69.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHH
Q 041942 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315 (498)
Q Consensus 236 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (498)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...+++.....
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----------------
Confidence 4455555666666666666666655432 2234444445555555555555555553333221
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 395 (498)
..+...+..+...+...|++++|.++++++.+.. +.+...+..+...+.+.|++++|...+++
T Consensus 66 ----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 66 ----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp ----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ----------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 1233344555556666666666666666665532 22355555666666666666666666666
Q ss_pred hHH
Q 041942 396 MRD 398 (498)
Q Consensus 396 ~~~ 398 (498)
+..
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 655
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=7e-08 Score=82.13 Aligned_cols=118 Identities=8% Similarity=0.030 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAG 384 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 384 (498)
.+..+|.+.|++++|...|++..+ .+...|..+..+|...|++++|+..|++.++ +.|+ ..++..+...+...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 366666677777777777766542 2556677777777777777777777777776 3453 556666666655444
Q ss_pred C--HHHHHHHHHHhHHhcCCCCCh-------hHHHhhCChHHHHHHHHHHHccCCC
Q 041942 385 K--VEEGKKYFKLMRDEYNIEPNI-------RHYGVHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 385 ~--~~~a~~~~~~~~~~~~~~p~~-------~~y~~~g~~~~a~~~~~~~~~~~~~ 431 (498)
+ ...+...++.... ..|.. ..+...|++++|...|+++++++|+
T Consensus 137 ~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3 2334444433321 11111 1122566777777777777777775
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.79 E-value=2.3e-07 Score=80.04 Aligned_cols=175 Identities=11% Similarity=-0.045 Sum_probs=93.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CCH-HHHHHHH
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPK--RD----VVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDD-VTMLSLL 275 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~-~~~~~li 275 (498)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+.... +.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 444555666777777777777776653 32 135566667777777777777777776654211 111 1233333
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhH---------------
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-VST--------------- 337 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~--------------- 337 (498)
.++...+.. .+ ..+..+...+...|+.++|...|+++.+ |+ ...
T Consensus 86 ~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 86 LTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 333321000 00 0000011111123444444444444432 11 111
Q ss_pred --HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 338 --WSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 338 --~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...+...|...|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+..
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 124556677888888888888888773 343 24566777788888888888888887766
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=1.4e-07 Score=80.42 Aligned_cols=179 Identities=8% Similarity=-0.064 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC----CHHHHHHH
Q 041942 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG----SIERAIEV 326 (498)
Q Consensus 251 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~ 326 (498)
+|+..|++..+.| +...+..+...+...+++++|...|++.... + ++..+..|...|.. + ++++|...
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3445555555543 3444555555555556666666665333322 1 22333334444444 3 45555555
Q ss_pred HhcCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 327 FLGMRD-RDVSTWSTLIGGLAF----HGFAEESIAMFREMQRLKVRPT---EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 327 ~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|++..+ .++..+..|...|.. .+++++|+++|++..+.| |+ ...+..|...|....
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~-------------- 139 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGV-------------- 139 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTS--------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCC--------------
Confidence 544432 234444444444444 445555555555544432 21 233333333333200
Q ss_pred hcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC-C-----CchHHHHHHHHhhhCCCc
Q 041942 399 EYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR-G-----EWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 399 ~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 465 (498)
| ..+++++|...|+++.+. |+++.++..|+..|... | ++++|+..|++..+.|..
T Consensus 140 --g---------~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 140 --H---------GPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp --S---------SSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred --C---------CCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 0 145667777777777666 66777889999998764 3 899999999999888764
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.79 E-value=1.4e-07 Score=80.22 Aligned_cols=131 Identities=8% Similarity=-0.032 Sum_probs=83.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (498)
+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|...|++.+...+ .+...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA--DNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHh
Confidence 7777778888888888888777653 33566777777777888888888888866665543 33455556666665443
Q ss_pred --CHHHHHHHHhcCCCCChh--HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041942 319 --SIERAIEVFLGMRDRDVS--TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374 (498)
Q Consensus 319 --~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 374 (498)
....+...+..+..++.. .+.....++...|++++|+..|++.++ +.|+.....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 345566666666665543 233445556667778888888888777 557654433
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=6.9e-07 Score=86.45 Aligned_cols=365 Identities=10% Similarity=-0.056 Sum_probs=207.7
Q ss_pred CC-ChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhccc-chhhHHHHHH
Q 041942 52 PG-AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVHG 129 (498)
Q Consensus 52 ~~-~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~ 129 (498)
.| +++.|+.+|++.. ..+-. |+++.+..+|++.... .|+...|..-+....+.+ ..+....+|+
T Consensus 7 ~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45 3667777766653 22211 8999999999999874 579999998888777666 3467788888
Q ss_pred HHHHh-CC-CCChHHHHHHHHHHH----hcCChhHHHHhhccCCCCCcchHHHHHHHHH---hcCChHHHHHHHhcCCCC
Q 041942 130 KIVKY-GF-EFNRFVRNSLIYFHA----NCGDLNTASVLFDGDAKMDVVAWSSLTAGYA---RRGELSMARSLFDEMPVR 200 (498)
Q Consensus 130 ~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~ 200 (498)
..+.. |. ..+..+|...+..+. ..|+++.+.++|+.........+..+-..|. ...+...+..++.+.
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~--- 149 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT--- 149 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH---
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH---
Confidence 88764 43 346788888887754 3467888888988654421222222222221 111222222222211
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCC--C-----hHHHHHHHHHHHhCCCCCCHH
Q 041942 201 DLVSWNVMITGYAKQGEMEKANELFNEVPK----RDVVSWNAMISGYVLCG--M-----NKQALEMFEEMRSVGERPDDV 269 (498)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~ 269 (498)
.+.+..|..+++.+.+ .+...|...+..-...+ - .+.+..+|++++... +.+..
T Consensus 150 --------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~ 214 (493)
T 2uy1_A 150 --------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEE 214 (493)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred --------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHH
Confidence 0111222222221111 13334554444432221 0 234566777777643 44566
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHH-HHHHHhcCC--C-------C---Chh
Q 041942 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER-AIEVFLGMR--D-------R---DVS 336 (498)
Q Consensus 270 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~--~-------~---~~~ 336 (498)
.|...+.-+.+.|+.+.|..+|+..+.. +.+...+.. |....+.++ ...+.+... . + ...
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence 6766677777778888888888666655 223222221 222111111 111221110 0 1 124
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHhHHhcCCCCC-----hhHHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA-GKVEEGKKYFKLMRDEYNIEPN-----IRHYG 410 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~-----~~~y~ 410 (498)
.|-..+....+.++.+.|..+|+++ .. ...+...|......-... ++.+.|..+|+...+..+-.|+ +....
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 5666677666778899999999998 32 123444454333222222 3699999999998885443333 11223
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
..|+.+.|+.+|+++ +.....|...+..-...|+.+.+..+++++.+
T Consensus 366 ~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 366 RIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778899999999997 33567788888888889999999998888874
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=7.6e-08 Score=87.46 Aligned_cols=146 Identities=8% Similarity=-0.045 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---CC--CHH
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMR-------DR--DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV---RP--TEI 371 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p--~~~ 371 (498)
.++.+...|.+.|++++|...|++.. .+ -..++..+...|.. |++++|+..|++..+..- .+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 34445555555555555555444322 11 12355566666666 777777777766654210 00 134
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----------hhHHHhhCChHHHHHHHHHHHccCCCCCc-----h
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----------IRHYGVHGDVELGRLANKRLLNMRKDESG-----D 435 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~-----~ 435 (498)
++..+...+.+.|++++|...+++..+...-.++ ...|...|++++|...|++++ ++|.... .
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 5566666677777777777777766552111111 112224577777777777777 7765443 2
Q ss_pred HHHHHHHHHhCCCchHHHH
Q 041942 436 YVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~ 454 (498)
...++.++ ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 34445444 4566555444
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=6.1e-08 Score=74.95 Aligned_cols=96 Identities=7% Similarity=0.045 Sum_probs=84.2
Q ss_pred CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchH
Q 041942 366 VRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDY 436 (498)
Q Consensus 366 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~ 436 (498)
+.|+ ...+......+.+.|++++|++.|++.++ +.|+ ...|...|++++|...++++++++|+++.+|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4565 45677788899999999999999999988 4555 4455599999999999999999999999999
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 437 VLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..++.+|...|++++|++.|++..+...
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999987543
No 116
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.72 E-value=5.7e-08 Score=89.44 Aligned_cols=121 Identities=8% Similarity=-0.004 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----------------EITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
..|..+...|...|++++|+..|++.++. .|+ ...|..+..++.+.|++++|...++++.+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 34555555666666666666666666552 233 25666666666667777777777766666
Q ss_pred cCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHH-HHHHHHhhh
Q 041942 400 YNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV-EKVRKLMDD 461 (498)
Q Consensus 400 ~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 461 (498)
+.|+ ...|...|++++|...|+++++++|++..++..++.++...|++++| ..+|++|.+
T Consensus 225 --~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 --LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 33344677777777777888888999999999999999999999998 456666643
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=1.9e-07 Score=75.99 Aligned_cols=122 Identities=7% Similarity=-0.016 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IR 407 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~ 407 (498)
..|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .|+ ..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 345556666666777777777777666632 223556666666666777777777777766662 333 23
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHH--HHhCCCchHHHHHHHHhhh
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNI--YASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 461 (498)
.|...|++++|...++++++..|.+..++..+..+ +...|++++|++.+++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 33467777777777777777888888777555544 8888999999999987753
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=3.4e-07 Score=91.01 Aligned_cols=148 Identities=15% Similarity=0.014 Sum_probs=108.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHH
Q 041942 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325 (498)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (498)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++.+.... .+...+..+...|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999887653 33577888888999999999999999966665442 456677888999999999999999
Q ss_pred HHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhc---CCHHHHHHHHHHhHH
Q 041942 326 VFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHA---GKVEEGKKYFKLMRD 398 (498)
Q Consensus 326 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 398 (498)
.+++..+ .+...+..+..+|...|++++|.+.+++..+. .| +...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9987653 36778999999999999999999999999884 45 467888888899999 999999999999888
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=6.4e-08 Score=77.25 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhC
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g 413 (498)
...+..+...+...|++++|+..|++... ..| +...|..+..++...|++++|...++++..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 83 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--------------- 83 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---------------
Confidence 34555566666666777777777766666 234 355555566666666666666666665555
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
++|+++.++..++.+|...|++++|+..|++..+
T Consensus 84 --------------l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 84 --------------MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp --------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555544
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=3.4e-06 Score=81.63 Aligned_cols=352 Identities=9% Similarity=-0.035 Sum_probs=205.6
Q ss_pred HHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCC-hHHHHHHHHHHHhC-CCC-CCHhhHHHHH
Q 041942 38 SALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQN-PLDAVFLYTQMEKC-SIK-PNKFTFSFVL 112 (498)
Q Consensus 38 ~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~-~~~-p~~~~~~~li 112 (498)
.+|...+. .+- .|+++.+..+|++.. .|++..|...+....+.+. .+....+|+..... |.. ++...|...+
T Consensus 16 ~vyer~l~-~~P--~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARR-LYM--SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHH-HHH--TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHH-HCC--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34444444 443 378999999999987 6899999999988877763 45677888887653 433 3667888888
Q ss_pred HHhh----cccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChH
Q 041942 113 KACT----RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188 (498)
Q Consensus 113 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (498)
..+. ..++.+.+..+|+..+......-...|......-.. .....+.+++.+. . +.+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~---------------~--~~y~ 154 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDT---------------L--PIFQ 154 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHH---------------H--HHHH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHH---------------h--HHHH
Confidence 7654 347888999999999983211112233333322111 1122222222110 0 1122
Q ss_pred HHHHHHhcCC----CCCcchHHHHHHHHHhcC--C-----hHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHH
Q 041942 189 MARSLFDEMP----VRDLVSWNVMITGYAKQG--E-----MEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALE 254 (498)
Q Consensus 189 ~A~~~~~~~~----~~~~~~~~~l~~~~~~~~--~-----~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 254 (498)
.|...++.+. ..+...|...+..-...+ - .+.+..+|+++.. .+...|...+..+.+.|+.++|..
T Consensus 155 ~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 155 SSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222222221 112234444444322211 0 2345566666553 356678888888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhh-----------cCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT-----------SGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 255 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
+|++.... +.+...+.. |......+.. ++...... .......+|...+....+.++.+.|
T Consensus 235 i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 235 VVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 99999877 333322221 2221111221 21111110 0011234566677777778889999
Q ss_pred HHHHhcCCCCC--hhHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 324 IEVFLGMRDRD--VSTWSTLIGGLA-FHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 324 ~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
..+|++...|. ...|...+..-. ..++.+.|..+|+...+.- |+ +..+...+....+.|+.+.|..+|+++.+
T Consensus 306 R~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k- 382 (493)
T 2uy1_A 306 RKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLEK- 382 (493)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-
T ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 99998884332 233432222222 2346999999999998742 43 45556667777889999999999998732
Q ss_pred cCCCCChhHHH-------hhCChHHHHHHHHHHHc
Q 041942 400 YNIEPNIRHYG-------VHGDVELGRLANKRLLN 427 (498)
Q Consensus 400 ~~~~p~~~~y~-------~~g~~~~a~~~~~~~~~ 427 (498)
....+. ..|+.+.+..++++..+
T Consensus 383 -----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 383 -----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222222 77999999999988884
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=7.1e-08 Score=86.34 Aligned_cols=186 Identities=11% Similarity=0.009 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 041942 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGG 344 (498)
Q Consensus 268 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 344 (498)
...+..+...+...|++++|...|++.+...+ .+...+..+..+|.+.|++++|...+++..+ .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34555556666666777777777655554432 3455666777777778888888887776654 356678888888
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--hhHHH---hhCChHHH
Q 041942 345 LAFHGFAEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYG---VHGDVELG 418 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~---~~g~~~~a 418 (498)
|...|++++|...|++..+. .|+. ..+...+....+. ..+... ..... ....++ +..+. ..|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~-~~~~~~~~i~~~l~~l~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRW-NSIEE-RRIHQESELHSYLTRLIAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHH-HHHHH-TCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHH-HHHHH-HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88899999999998888763 3321 1111111111111 111111 11222 122222 22111 56888999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhC-CCchHHHHHHHHhhhC
Q 041942 419 RLANKRLLNMRKDESGDYVLLSNIYASR-GEWNRVEKVRKLMDDS 462 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 462 (498)
...++++++++|++......+...+.+. +++++|.++|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999888888888878777 7799999999998764
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.64 E-value=1.8e-06 Score=73.58 Aligned_cols=168 Identities=10% Similarity=0.032 Sum_probs=127.1
Q ss_pred HHHHHhhCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----CchHHHHHHHHHH
Q 041942 221 ANELFNEVPK-RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG----DLEVGKKVHCTLL 295 (498)
Q Consensus 221 A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~~~ 295 (498)
|.+.|++..+ .+..++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444432 467788888888888999999999999988876 45666677777777 6 8999999995554
Q ss_pred HhhcCCcchhhHHHHHHHHHh----cCCHHHHHHHHhcCCCCC-----hhHHHHHHHHHHh----CCCHHHHHHHHHHHH
Q 041942 296 DMTSGVAKVLHGNALIDMYAK----CGSIERAIEVFLGMRDRD-----VSTWSTLIGGLAF----HGFAEESIAMFREMQ 362 (498)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~m~ 362 (498)
. .+ ++..+..|...|.. .+++++|...|++..+.+ +..+..|...|.. .+++++|+.+|++..
T Consensus 81 ~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 3 32 44556677777776 789999999998877543 6888899999988 889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhhc-C-----CHHHHHHHHHHhHH
Q 041942 363 RLKVRPTEITFVGVLVACSHA-G-----KVEEGKKYFKLMRD 398 (498)
Q Consensus 363 ~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~ 398 (498)
+. ..+...+..|...|... | ++++|..++++..+
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 85 23445666666666543 3 88999999988877
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=6.6e-06 Score=73.65 Aligned_cols=206 Identities=10% Similarity=0.024 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--CchHHHHHHHHHHHhhcCCcchhhHHHHHHHH----Hhc---CC
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLG--DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY----AKC---GS 319 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 319 (498)
.++|+.+++.++... +-+...|+.--..+...+ +++++...++..+...+-. ..+|+.-...+ ... ++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~--y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN--YQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC--CHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc--HHHHHHHHHHHHHHHHhccccCC
Confidence 356666666666542 223334454445555555 6666666665555444322 22222222222 233 56
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC------HHH
Q 041942 320 IERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAE--ESIAMFREMQRLKVRPTEITFVGVLVACSHAGK------VEE 388 (498)
Q Consensus 320 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 388 (498)
+++++.+++.+.+ +|..+|+.-.-.+...|.++ ++++.++++++.+ .-|...|+.-...+.+.|. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 6777777766653 35566666666666666666 7777777777743 2345566655555555555 677
Q ss_pred HHHHHHHhHHhcCCCCC-hhHH-------HhhCC-hHHHHHHHHHHHccC---CCCCchHHHHHHHHHhCCCchHHHHHH
Q 041942 389 GKKYFKLMRDEYNIEPN-IRHY-------GVHGD-VELGRLANKRLLNMR---KDESGDYVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 389 a~~~~~~~~~~~~~~p~-~~~y-------~~~g~-~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (498)
+.+.++.++. ..|+ ...+ .+.|+ .+......+++.+++ |.++.++..++.+|.+.|+.++|++++
T Consensus 205 El~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 7777777666 3444 1111 14444 344555666666665 778889999999999999999999999
Q ss_pred HHhhh
Q 041942 457 KLMDD 461 (498)
Q Consensus 457 ~~m~~ 461 (498)
+++.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=2.5e-07 Score=83.99 Aligned_cols=188 Identities=9% Similarity=0.033 Sum_probs=139.2
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD-LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
..|++++|.+++++..+... .. +.. .++++.|...|.. ....|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~----------------a~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK----------------AAVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH----------------HHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH----------------HHHHHHHcCCHHHH
Confidence 35778899999988765321 11 122 5778888887732 34567778888888
Q ss_pred HHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhhcCCHHHH
Q 041942 324 IEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRLK---VRPT--EITFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 324 ~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a 389 (498)
...|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 888776542 11 3578889999999999999999999876521 1122 4577788888988 999999
Q ss_pred HHHHHHhHHhcCCCCC-----------hhHHHhhCChHHHHHHHHHHHccCCCCC------chHHHHHHHHHhCCCchHH
Q 041942 390 KKYFKLMRDEYNIEPN-----------IRHYGVHGDVELGRLANKRLLNMRKDES------GDYVLLSNIYASRGEWNRV 452 (498)
Q Consensus 390 ~~~~~~~~~~~~~~p~-----------~~~y~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A 452 (498)
...+++..+...-..+ ...|...|++++|...|++++++.|.+. .++..++.++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998762211111 3345589999999999999998876554 3677888889999999999
Q ss_pred HHHHHHhh
Q 041942 453 EKVRKLMD 460 (498)
Q Consensus 453 ~~~~~~m~ 460 (498)
+..|++..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999987
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=4.5e-07 Score=70.47 Aligned_cols=110 Identities=7% Similarity=-0.041 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------- 405 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------- 405 (498)
+...|..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...++++.+ ..|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~ 89 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ---LEPTFIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCchHHHHH
Confidence 3456667777777777777777777777763 33 466677777777777777777777777766 2333
Q ss_pred -hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 406 -IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 406 -~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
...|...|++++|...++++++.+|.+..++..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 3334466777777777777777788888888888888776653
No 126
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=4.9e-08 Score=82.38 Aligned_cols=146 Identities=8% Similarity=-0.105 Sum_probs=95.4
Q ss_pred HHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-H----------------HHH
Q 041942 314 YAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-E----------------ITF 373 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~----------------~~~ 373 (498)
....|+++++.+.++.-.+. ....+..+...+...|++++|+..|++..+. .|+ . ..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHH
Confidence 33445555555555433221 3445667777888888888888888888873 232 2 677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 041942 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (498)
..+..++.+.|++++|...++++.+ +.|+ ...|...|++++|...|+++++++|+++.++..+..++..
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLK---IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 7777888888999999988888877 3454 3444588899999999999999999999999999999999
Q ss_pred CCCchHHH-HHHHHhhhCCC
Q 041942 446 RGEWNRVE-KVRKLMDDSDI 464 (498)
Q Consensus 446 ~g~~~~A~-~~~~~m~~~~~ 464 (498)
.|+.+++. ..+..|...|.
T Consensus 169 ~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 98888877 66777655543
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=5e-07 Score=76.24 Aligned_cols=158 Identities=11% Similarity=0.029 Sum_probs=87.1
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC------C---ChhHHHHHHHHHHhCC
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD------R---DVSTWSTLIGGLAFHG 349 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~---~~~~~~~l~~~~~~~~ 349 (498)
...|++++|.+.+ +.... ........+..+...+...|++++|...+++..+ . ...++..+...|...|
T Consensus 3 ~~~g~~~~A~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQA-QALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHH-HHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHH-HHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3466777777744 22222 1123445556666666677777777666655432 1 2345666666666777
Q ss_pred CHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHH
Q 041942 350 FAEESIAMFREMQRL----KVRP--TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANK 423 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~ 423 (498)
++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+...-.++..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------- 144 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV---------------- 144 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----------------
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH----------------
Confidence 777777766665542 1011 123445555566666666666666666554100000000
Q ss_pred HHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
....++..++.++...|++++|...+++..+
T Consensus 145 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 -------AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp -------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 0123467888889999999999888887764
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=5.7e-07 Score=69.54 Aligned_cols=111 Identities=12% Similarity=-0.037 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------h
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------I 406 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~ 406 (498)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+. .|+ .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHH
Confidence 3455566666666777777777777766632 224556666666667777777777777776662 333 2
Q ss_pred hHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCc
Q 041942 407 RHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449 (498)
Q Consensus 407 ~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (498)
..|...|++++|...++++++..|+++.++..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 3344667777777777777778888888899999988888775
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.59 E-value=8.2e-07 Score=75.65 Aligned_cols=121 Identities=13% Similarity=-0.045 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChH
Q 041942 143 RNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEME 219 (498)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 219 (498)
+..+...+...|++++|...|++...++...|..+...+.+.|++++|+..|++.. +.+...|..+..++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 44556667777788888877777776677777777777777888888877777766 445566777777777777877
Q ss_pred HHHHHHhhCCC---CCh----------------hhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 041942 220 KANELFNEVPK---RDV----------------VSWNAMISGYVLCGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 220 ~A~~~~~~~~~---~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 263 (498)
+|.+.|++..+ .+. ..+..+..+|...|++++|...|++..+..
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777776543 122 567777778888888888888888877653
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.59 E-value=1.1e-06 Score=76.92 Aligned_cols=192 Identities=9% Similarity=-0.053 Sum_probs=120.4
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHhccCCchHHHHHHHHHHHhh----cCCcc----------
Q 041942 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSL-------LTACADLGDLEVGKKVHCTLLDMT----SGVAK---------- 303 (498)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---------- 303 (498)
..++...|.+.|.+..+.. +-....|..+ ...+...++..++...+...+... +...+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777553 2234445444 233333333444443332222200 00001
Q ss_pred -----hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHH
Q 041942 304 -----VLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--EITFV 374 (498)
Q Consensus 304 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~ 374 (498)
....-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 12234566778889999999999998874 433366666778889999999999998665521 121 23677
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
.+..++.+.|++++|+..|++... ....|. ...+.+.|+.++|...|+++...+|+ ..++..|.
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 778899999999999999999876 333254 11222777888888888888877777 55555553
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.57 E-value=2.1e-07 Score=76.76 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=30.9
Q ss_pred hhCCh--HHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 411 VHGDV--ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 411 ~~g~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
..|++ ++|...++++++.+|.++.++..++.+|...|++++|+..++++.+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 34444 555555555555556666666666666666666666666666665543
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=9.3e-07 Score=67.62 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IR 407 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~ 407 (498)
..|..+...+...|++++|.++++++.+.. +.+..++..+...+...|++++|..+++++.+. .|+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHH
Confidence 345555556666666666666666665532 123445555555666666666666666655552 222 22
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (498)
.|...|++++|...++++++.+|.++.++..++.++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 233555555555566666666677777777776666544
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.55 E-value=2.5e-06 Score=76.80 Aligned_cols=161 Identities=13% Similarity=0.012 Sum_probs=89.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc----hhhHH
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDD-----VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGN 308 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 308 (498)
..+..+...|++++|...+.+..+....... ..+..+...+...|++++|...+++.+.......+ ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3455555666666666666655543211110 11222333445556666666666444432211111 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC-----CCC-----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMR-----DRD-----VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KVRPT-EITF 373 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~ 373 (498)
.+...|...|++++|...|++.. .++ ..+|..+...|...|++++|+..+++..+. +.... ..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56666666666666666665543 111 246677777788888888888888776542 11111 4566
Q ss_pred HHHHHHHhhcCCHHHH-HHHHHHhHH
Q 041942 374 VGVLVACSHAGKVEEG-KKYFKLMRD 398 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a-~~~~~~~~~ 398 (498)
..+...+.+.|++++| ...+++...
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7777778888888888 666766654
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.51 E-value=7.5e-07 Score=70.43 Aligned_cols=96 Identities=13% Similarity=0.026 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhC
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g 413 (498)
...+..+...+...|++++|+..|++.... .| +...|..+..++.+.|++++|...+++...
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 80 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL--------------- 80 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---------------
Confidence 345666677777788888888888887773 34 456666667777777777777777776666
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
++|+++.++..++.+|...|++++|+..|++..+
T Consensus 81 --------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 81 --------------MDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp --------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555555554443
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.50 E-value=3.4e-06 Score=75.88 Aligned_cols=207 Identities=8% Similarity=-0.011 Sum_probs=117.2
Q ss_pred HHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhh---HHHHHHHHhccCChHHHHHHHHHHHhC
Q 041942 23 QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM---YNTIIRGSAQSQNPLDAVFLYTQMEKC 99 (498)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~A~~~~~~m~~~ 99 (498)
..+.........|+..+...+.. .+.. .++. ++..-...+... +...+..+...|++++|.+++++..+.
T Consensus 32 ~~~s~~e~g~~~~~~~~l~~i~~-~l~~---~~~~---~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 32 SEVSRIESGAVYPSMDILQGIAA-KLQI---PIIH---FYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHH-HHTC---CTHH---HHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCHHHHHHHHH-HhCc---CHHH---HhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 34445554456788888888777 5554 1222 222222222333 334467788899999999999998764
Q ss_pred C-CCCCHh----hHHHHHHHhhcccchhhHHHHHHHHHHhCCC-CC----hHHHHHHHHHHHhcCChhHHHHhhccCCCC
Q 041942 100 S-IKPNKF----TFSFVLKACTRLLYRNMGFCVHGKIVKYGFE-FN----RFVRNSLIYFHANCGDLNTASVLFDGDAKM 169 (498)
Q Consensus 100 ~-~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 169 (498)
. ..|+.. .+..+...+...++++.|...+++..+.... ++ ..+++.+..+|...|++++|...|++..+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~- 183 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK- 183 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 2 122221 2334555566778899999999998874322 22 22577777788888888887777654331
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--------C-ChhhHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK--------R-DVVSWN 237 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~-~~~~~~ 237 (498)
.++... +....++..+..+|.+.|++++|...+++..+ . -..+|.
T Consensus 184 -----------------------~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 184 -----------------------QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp -----------------------HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred -----------------------HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 011000 00012334444444444454444444444331 0 134566
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHH
Q 041942 238 AMISGYVLCGM-NKQALEMFEEMR 260 (498)
Q Consensus 238 ~l~~~~~~~g~-~~~a~~~~~~m~ 260 (498)
.+..+|...|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66777777774 477777766654
No 136
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.49 E-value=1.2e-06 Score=69.15 Aligned_cols=102 Identities=13% Similarity=-0.019 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCC
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-------------EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 403 (498)
.+......+...|++++|+..|++.++ +.|+ ...|..+..++.+.|++++|+..+++.++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 344566677788899999999998887 4454 22777788888888888888888877665
Q ss_pred CChhHHHhhCChHHHHHHHHHHHccCCCCCchH----HHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 404 PNIRHYGVHGDVELGRLANKRLLNMRKDESGDY----VLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 404 p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
+|++..+++|++..+| ...+.++...|++++|+..|++..+.
T Consensus 86 -----------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 86 -----------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp -----------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4777777799998899 99999999999999999999998763
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.49 E-value=5.6e-07 Score=71.73 Aligned_cols=90 Identities=11% Similarity=-0.026 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh
Q 041942 307 GNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSH 382 (498)
Q Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 382 (498)
+..+...+.+.|++++|...|+++.. | +...|..+..+|...|++++|+..|+++.+ +.|+ ...|..+..++.+
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHH
Confidence 34444455555555555555554432 2 445555555555555555556555555555 3332 4455555555555
Q ss_pred cCCHHHHHHHHHHhHH
Q 041942 383 AGKVEEGKKYFKLMRD 398 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~ 398 (498)
.|++++|...|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555555
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.48 E-value=1.7e-06 Score=77.98 Aligned_cols=205 Identities=7% Similarity=-0.036 Sum_probs=102.5
Q ss_pred HHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 041942 25 QALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN 104 (498)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~ 104 (498)
...+......|+..+...+.. .+.. .++................+...+..+...|++++|.+.+++..+.... .
T Consensus 34 is~~e~g~~~~~~~~l~~l~~-~l~~---~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~ 108 (293)
T 2qfc_A 34 VSRIESGAVYPSMDILQGIAA-KLQI---PIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-H 108 (293)
T ss_dssp HHHHHTSSSCCCHHHHHHHTT-TSCC---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-C
T ss_pred HHHHHCCCCCCCHHHHHHHHH-HhCc---CHHHHhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-C
Confidence 334443344566666555554 3333 1222111111111122334555667777888888888888777664311 1
Q ss_pred H------hhHHHHHHHhhcccchhhHHHHHHHHHHhCCC---CC--hHHHHHHHHHHHhcCChhHHHHhhccCCCCCcch
Q 041942 105 K------FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE---FN--RFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173 (498)
Q Consensus 105 ~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 173 (498)
. ..+..+...+...|+++.|...+++..+.... +. ..+++.+...|...|++++|...|++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~----- 183 (293)
T 2qfc_A 109 PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK----- 183 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Confidence 1 11223334455666777777777776643211 11 23555566666666666666655543320
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHhhCCC-------C--ChhhHHHH
Q 041942 174 WSSLTAGYARRGELSMARSLFDEMPVRD-----LVSWNVMITGYAKQGEMEKANELFNEVPK-------R--DVVSWNAM 239 (498)
Q Consensus 174 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l 239 (498)
+++. .++ ..++..+..+|.+.|++++|...+++..+ . -..+|..+
T Consensus 184 -------------------~~~~--~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~l 242 (293)
T 2qfc_A 184 -------------------QLEA--LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp -------------------HHHH--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHH
T ss_pred -------------------HHHh--cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0000 111 12344444455555555555555544331 0 13456667
Q ss_pred HHHHHhCCChHHH-HHHHHHHH
Q 041942 240 ISGYVLCGMNKQA-LEMFEEMR 260 (498)
Q Consensus 240 ~~~~~~~g~~~~a-~~~~~~m~ 260 (498)
...|...|++++| ...+++..
T Consensus 243 g~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 243 GECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHH
Confidence 7777777777777 56566554
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=3.8e-06 Score=73.49 Aligned_cols=123 Identities=12% Similarity=-0.003 Sum_probs=76.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC-C----hhhHHHHHHHHHhCCC
Q 041942 176 SLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPKR-D----VVSWNAMISGYVLCGM 248 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~l~~~~~~~g~ 248 (498)
.+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+..... + ...+..+..++...|+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 34556667777777777777776 333224445555677777777777777755542 1 2356666777777777
Q ss_pred hHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCchHHHHHHHHHHHhh
Q 041942 249 NKQALEMFEEMRSVGERPD--DVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 298 (498)
+++|+..|++.......|. .........++.+.|+.++|...|++.....
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7777777777764332143 2344555566677777777777775554433
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=8.9e-07 Score=68.28 Aligned_cols=96 Identities=7% Similarity=-0.045 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCC
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGD 414 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~ 414 (498)
..|..+...+...|++++|+..|++.++. .| +...|..+..++.+.|++++|...+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------------- 66 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE---------------- 66 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------
Confidence 45666777777888888888888887773 34 466666677777777777777666666655
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
++|+++.+|..++.++...|++++|+..|++..+.
T Consensus 67 -------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 67 -------------KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp -------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 45556666666666666666666666666666543
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.46 E-value=2.6e-06 Score=63.63 Aligned_cols=102 Identities=12% Similarity=0.011 Sum_probs=71.5
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhC
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g 413 (498)
+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--------------- 68 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN--------------- 68 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------------
Confidence 34556666777777777777777777777632 22355555556666666666666555555544
Q ss_pred ChHHHHHHHHHHHccCCC--CCchHHHHHHHHHhC-CCchHHHHHHHHhhhCCCc
Q 041942 414 DVELGRLANKRLLNMRKD--ESGDYVLLSNIYASR-GEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 465 (498)
..|. +..++..++.++... |++++|++.+++..+....
T Consensus 69 --------------~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 69 --------------VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp --------------TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred --------------hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 5666 778899999999999 9999999999999876553
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.45 E-value=1.5e-06 Score=69.27 Aligned_cols=94 Identities=14% Similarity=0.016 Sum_probs=81.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLV 378 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~ 378 (498)
+...+..+...+...|++++|...|+... ..+...|..+..+|...|++++|+..|+++.. +.| +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHH
Confidence 45566778889999999999999999875 34788899999999999999999999999998 445 4678888889
Q ss_pred HHhhcCCHHHHHHHHHHhHH
Q 041942 379 ACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~ 398 (498)
++...|++++|...+++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988877
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.44 E-value=5.6e-07 Score=68.88 Aligned_cols=95 Identities=9% Similarity=-0.112 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVE 416 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~ 416 (498)
+..+...+.+.|++++|+..+++.++ ..| +...+..+..++...|++++|+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~------------------------- 72 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAII------------------------- 72 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHH-------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHH-------------------------
Confidence 44455556666666666666666666 334 34455555555555555555554
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.|+++++++|+++.++..++.+|...|++++|+..+++..+..
T Consensus 73 ----~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 73 ----ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp ----HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ----HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4555555688888999999999999999999999999987654
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.43 E-value=1.1e-06 Score=84.37 Aligned_cols=122 Identities=7% Similarity=-0.003 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----------------EITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
..|..+...|.+.|++++|+..|++.++ +.|+ ...|..+..++.+.|++++|+..++++.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG- 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 4556666677777777777777777766 2333 36677777777888888888888888777
Q ss_pred cCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH-HHHHhhhC
Q 041942 400 YNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK-VRKLMDDS 462 (498)
Q Consensus 400 ~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~~ 462 (498)
+.|+ ...|...|++++|...|+++++++|++..++..++.++...|++++|.. .+++|..+
T Consensus 346 --~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 346 --LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred --cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3454 3344478888888888888999999999999999999999999988774 56666544
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=4.4e-06 Score=66.12 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=70.2
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---- 405 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---- 405 (498)
+...+..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...+++..+. .|+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 456677777778888888888888888877 4465 456666677777777777777777777662 332
Q ss_pred ----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 406 ----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 406 ----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
...|...|++++|...++++++++|++..++..+..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 22333666666666666666666676666665555543
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.1e-06 Score=66.13 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVA 379 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~ 379 (498)
...+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|+..+++.++ +.|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 44567788889999999999999987763 4678999999999999999999999999998 4464 7788888899
Q ss_pred HhhcCCHHHHHHHHHHhHH
Q 041942 380 CSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~ 398 (498)
+...|++++|...+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 9999999999999988877
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.42 E-value=2.8e-06 Score=68.92 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-------- 405 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------- 405 (498)
...|..+...+...|++++|+..|++.++ +.| +...|..+..++.+.|++++|...+++..+ +.|+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 85 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 44566666677777777777777777766 334 456666667777777777777777777766 3444
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSN 441 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 441 (498)
...|...|++++|...|+++++++|++...|...+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 333347777777777778888788888876655443
No 148
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.41 E-value=1.5e-05 Score=71.39 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 369 (498)
+...+..++.+|.+.|+.++|+++++.+.+. +.|-
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpi 291 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPI 291 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGG
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChH
Confidence 4556666777777777778888888777653 3454
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=4.9e-06 Score=62.77 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------h
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------I 406 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~ 406 (498)
..+..+...+...|++++|...+++.... .| +...+..+...+...|++++|...+++..+. .|+ .
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a 79 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 45556666777777777777777777663 33 4556666666666667776666666666552 222 1
Q ss_pred hHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 407 RHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 407 ~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
..|...|++++|...++++++.+|+++.++..++
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2222444444444444444445555544444443
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=1.7e-06 Score=68.27 Aligned_cols=94 Identities=13% Similarity=0.019 Sum_probs=80.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLV 378 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~ 378 (498)
+...+..+...+.+.|++++|...|+.... .+...|..+..+|...|++++|+..|++.... .| +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHH
Confidence 345556678889999999999999998753 47788999999999999999999999999984 45 4677888889
Q ss_pred HHhhcCCHHHHHHHHHHhHH
Q 041942 379 ACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~ 398 (498)
++...|++++|.+.+++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988877
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=2.8e-06 Score=71.54 Aligned_cols=82 Identities=9% Similarity=0.084 Sum_probs=41.0
Q ss_pred hcCChHHHHH---HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhccCCch
Q 041942 214 KQGEMEKANE---LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS----VGERP-DDVTMLSLLTACADLGDLE 285 (498)
Q Consensus 214 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~~~~ 285 (498)
..|++++|.+ .+..-......++..+...+...|++++|...+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4556666666 44332222344566666666666666666666666543 11111 2234444555555666666
Q ss_pred HHHHHHHHHH
Q 041942 286 VGKKVHCTLL 295 (498)
Q Consensus 286 ~a~~~~~~~~ 295 (498)
+|...+++.+
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665554433
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.39 E-value=1.5e-06 Score=77.65 Aligned_cols=189 Identities=7% Similarity=-0.054 Sum_probs=103.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 279 (498)
..+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4455555666666666666666665542 255566667777777777777777777766553 334556666677777
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
..|++++|...|++.+...+..+. .+...+....+..+.......-......+......+.. + ..|++++|++.++
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~~ 159 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR-L-IAAERERELEECQ 159 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTTS
T ss_pred HcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHHH
Confidence 777777777777555543321111 11111111111111111111222222233333333322 2 2588888988888
Q ss_pred HHHHCCCCCCHHHHH-HHHHHHhhc-CCHHHHHHHHHHhHH
Q 041942 360 EMQRLKVRPTEITFV-GVLVACSHA-GKVEEGKKYFKLMRD 398 (498)
Q Consensus 360 ~m~~~~~~p~~~~~~-~l~~~~~~~-g~~~~a~~~~~~~~~ 398 (498)
+..+ ..|+..... .+...+.+. +.+++|.++|.++.+
T Consensus 160 ~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 160 RNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp GGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8877 456644333 333333443 668888888888765
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.39 E-value=1.6e-06 Score=70.48 Aligned_cols=93 Identities=9% Similarity=0.008 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
+...+..+...+.+.|++++|...|++..+ +.|+ ...|...|++++|...++++++++|+++.+|..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 356778888899999999999999999988 4554 44455999999999999999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHhhhCCC
Q 041942 441 NIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
.+|...|++++|+..|++..+...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999987543
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=2.5e-06 Score=66.66 Aligned_cols=99 Identities=6% Similarity=-0.021 Sum_probs=66.3
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHh
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~ 411 (498)
.+...|..+...+...|++++|+..|++.... .| +...+..+..++...|++++|...+++..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------- 71 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE------------- 71 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------
Confidence 35566777777777777777777777777763 34 355666666666676776666666666555
Q ss_pred hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
++|+++.+|..++.+|...|++++|+..|++..+.
T Consensus 72 ----------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 72 ----------------LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45566666667777777777777777766666543
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=1.4e-06 Score=67.27 Aligned_cols=102 Identities=9% Similarity=-0.006 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChh-HHHhhC
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR-HYGVHG 413 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~y~~~g 413 (498)
..+..+...+.+.|++++|++.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++.++. .|+.. .|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~---- 79 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADY---- 79 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---Ccccchhh----
Confidence 4677788889999999999999999988 4564 677888888888888888888888887761 11100 00
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
+.-..+|..++.++...|++++|++.|++..+.
T Consensus 80 ----------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 80 ----------------KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 000135677778888888888888888887653
No 156
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.33 E-value=7e-06 Score=66.42 Aligned_cols=122 Identities=7% Similarity=-0.026 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (498)
..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++.+... +.+...+..+...+..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHH
Confidence 333444444444444444444443322 1233334444444444444444444443333222 1223333344444444
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHH--HHHHHHHhCCCHHHHHHHHHHH
Q 041942 317 CGSIERAIEVFLGMRD---RDVSTWS--TLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~---~~~~~~~--~l~~~~~~~~~~~~A~~~~~~m 361 (498)
.|++++|...|++..+ .+...+. .++..+...|++++|++.+.+.
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 4444444444444331 1222222 1222244455555555555544
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=4.7e-06 Score=62.84 Aligned_cols=95 Identities=6% Similarity=0.016 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (498)
...+..+...+...|++++|...+++.....+-.+. ...|...|++++|...++++++.+|+++.++..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888899999999999999999883222222 344558999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHhhhCCC
Q 041942 445 SRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|++++|...+++..+.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999987654
No 158
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=1e-06 Score=81.05 Aligned_cols=122 Identities=8% Similarity=0.016 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI------------------TFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
+..+...+...|++++|+..|++.+. +.|+.. .|..+..++.+.|++++|...+++..+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 258 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT- 258 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 44455555556666666666666555 334322 566677777777777777777777766
Q ss_pred cCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHH-hCCCchHHHHHHHHhhhCCC
Q 041942 400 YNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA-SRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 400 ~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~ 464 (498)
+.|+ ...|...|++++|...|+++++++|+++.++..+..+.. ..+..+++..+|++|.....
T Consensus 259 --~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 259 --EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp --HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3444 333447778888888888888888888888888887744 44667788888888866543
No 159
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.2e-05 Score=76.83 Aligned_cols=192 Identities=9% Similarity=-0.030 Sum_probs=92.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc
Q 041942 240 ISGYVLCGMNKQALEMFEEMRSVGERPDD----------------VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303 (498)
Q Consensus 240 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 303 (498)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|...+.......+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45566778888888888888765422211 12444555555666666666555443333222222
Q ss_pred hh----hHHHHHHHHHhcCCHHHHHHHHhcCCC--------C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC--
Q 041942 304 VL----HGNALIDMYAKCGSIERAIEVFLGMRD--------R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRL--KV-- 366 (498)
Q Consensus 304 ~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~-- 366 (498)
.. +.+.+...+...|+.++|..++..... + -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 111122222234445555544443221 0 1224444555555555555555555544321 11
Q ss_pred CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCC---CC----CchHHH
Q 041942 367 RPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRK---DE----SGDYVL 438 (498)
Q Consensus 367 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~---~~----~~~~~~ 438 (498)
++. ...+..++..|...|++++|..++++ ++...+ .+ ...+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-----------------------------al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTA-----------------------------ARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------------HHHHHHHSCCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHH-----------------------------HHHHhhcCCCchHHHHHHHHH
Confidence 111 22344444455555555555555544 443221 11 134556
Q ss_pred HHHHHHhCCCchHHHHHHHHhh
Q 041942 439 LSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
++..+...|++++|...|.+..
T Consensus 222 ~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 6666677777777777666654
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=7.6e-06 Score=67.28 Aligned_cols=115 Identities=7% Similarity=0.012 Sum_probs=65.1
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHH-HHhCCCH--HH
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGG-LAFHGFA--EE 353 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~-~~~~~~~--~~ 353 (498)
..|++++|...++..+...+ .+...+..+...|...|++++|...|++..+ .+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44556666666644444332 2344555566666666666666666655442 245555666666 5566766 77
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 354 SIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 354 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|...++++.+. .|+ ...+..+...+...|++++|...++++.+
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777777663 343 55566666666666777666666666655
No 161
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.29 E-value=7.6e-06 Score=63.31 Aligned_cols=116 Identities=11% Similarity=-0.072 Sum_probs=82.4
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
.+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345567778888888888888888888887653 3366777778888888888888888888888764 34566777777
Q ss_pred HHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcC
Q 041942 148 YFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRG 185 (498)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 185 (498)
.++...|++++|.+.|++... .+...+..+..++.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 788888888888877775443 23344555555554443
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=1.6e-06 Score=83.67 Aligned_cols=111 Identities=6% Similarity=0.023 Sum_probs=75.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhC
Q 041942 343 GGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHG 413 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g 413 (498)
..+.+.|++++|++.|++..+ ..|+ ...+..+..++.+.|++++|.+.+++..+ +.|+ ...|...|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 344556677777777777766 3343 56666666777777777777777777766 3444 33444777
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHH--HHhCCCchHHHHHHHH
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNI--YASRGEWNRVEKVRKL 458 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 458 (498)
++++|...++++++++|++..++..++.+ +.+.|++++|++.+++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 77777788888888889999999988888 8888999999999884
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.4e-05 Score=76.27 Aligned_cols=148 Identities=7% Similarity=-0.125 Sum_probs=73.7
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCC----------------hHHHHHHHHHHHhcCChhHHHHhhccCCC-----CC
Q 041942 112 LKACTRLLYRNMGFCVHGKIVKYGFEFN----------------RFVRNSLIYFHANCGDLNTASVLFDGDAK-----MD 170 (498)
Q Consensus 112 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 170 (498)
.+.+...|++++|.+.+..+.+...... ...+..+...|...|++++|.+.+....+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888888887532211 01355666677777777777766654432 01
Q ss_pred c----chHHHHHHHHHhcCChHHHHHHHhcCC-----CCC----cchHHHHHHHHHhcCChHHHHHHHhhCCC-------
Q 041942 171 V----VAWSSLTAGYARRGELSMARSLFDEMP-----VRD----LVSWNVMITGYAKQGEMEKANELFNEVPK------- 230 (498)
Q Consensus 171 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------- 230 (498)
. .+.+.+...+...|+++.|..++.... ..+ ..++..+...+...|++++|..+++.+..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 112222223334455666665555443 001 12344444555555555555555443321
Q ss_pred -C-ChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 041942 231 -R-DVVSWNAMISGYVLCGMNKQALEMFEEM 259 (498)
Q Consensus 231 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 259 (498)
+ ...++..++..|...|++++|..++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 0 1123444445555555555555554444
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=6.5e-06 Score=63.45 Aligned_cols=93 Identities=8% Similarity=0.006 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--------HHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--------EIT 372 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--------~~~ 372 (498)
...+..+...+.+.|++++|+..|++..+ .+...|..+..+|...|++++|++.+++.++. .|+ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHH
Confidence 34567789999999999999999988663 46789999999999999999999999999873 332 135
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|..+..++...|++++|++.+++..+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666777788888888888887766
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=7e-06 Score=64.08 Aligned_cols=95 Identities=6% Similarity=-0.143 Sum_probs=82.8
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 041942 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVL 377 (498)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~ 377 (498)
.+...+..+...+...|++++|...|+.... .+...|..+..++...|++++|...+++..+. .| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 4567778889999999999999999987653 46788999999999999999999999999984 45 477888888
Q ss_pred HHHhhcCCHHHHHHHHHHhHH
Q 041942 378 VACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.++...|++++|...++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999998877
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.23 E-value=4.6e-06 Score=67.06 Aligned_cols=134 Identities=16% Similarity=0.055 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CH
Q 041942 305 LHGNALIDMYAKCGSIERAIEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KVRP-TE 370 (498)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~ 370 (498)
.++..+...+...|++++|...+++..+ ++ ..++..+...+...|++++|...+++..+. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4556677777788888888888776553 11 136677777788888888888888776652 1111 13
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCch
Q 041942 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (498)
..+..+...+...|++++|.+.+++..+...-. ++ .+....++..++.+|...|+++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~--------------~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---------KD--------------RIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TC--------------HHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc---------cc--------------hHhHHHHHHHHHHHHHHccCHH
Confidence 355566667777777777777777665510000 00 0111346888999999999999
Q ss_pred HHHHHHHHhhh
Q 041942 451 RVEKVRKLMDD 461 (498)
Q Consensus 451 ~A~~~~~~m~~ 461 (498)
+|...+++..+
T Consensus 147 ~A~~~~~~a~~ 157 (164)
T 3ro3_A 147 QAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 167
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.23 E-value=1.3e-05 Score=61.02 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=53.1
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (498)
..|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|+++.|...++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555555566666666666666655432 2344455555555566666666666666665543 23455555666666
Q ss_pred HhcCChhHHHHhhccC
Q 041942 151 ANCGDLNTASVLFDGD 166 (498)
Q Consensus 151 ~~~g~~~~A~~~~~~~ 166 (498)
...|++++|...|++.
T Consensus 88 ~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 6666666666666543
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=8.7e-06 Score=62.12 Aligned_cols=91 Identities=10% Similarity=0.009 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACS 381 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 381 (498)
.+..+...+.+.|++++|...|++..+ | +...|..+..++...|++++|+..|++.++ +.|+ ...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 345677788999999999999998763 3 678899999999999999999999999999 5564 678888889999
Q ss_pred hcCCHHHHHHHHHHhHH
Q 041942 382 HAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 382 ~~g~~~~a~~~~~~~~~ 398 (498)
..|++++|...++++.+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998876
No 169
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.18 E-value=1.3e-05 Score=61.59 Aligned_cols=114 Identities=11% Similarity=-0.049 Sum_probs=57.7
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (498)
..|..+...+...|++++|...|++..... +.+...+..+..++...|+++.|...++...+.. +.+...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344445555555555555555555554432 2234455555555555555555555555555543 22344555555555
Q ss_pred HhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCC
Q 041942 151 ANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGE 186 (498)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 186 (498)
...|++++|...|+.... .+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555554322 233344444445544443
No 170
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.16 E-value=2.5e-05 Score=71.70 Aligned_cols=158 Identities=18% Similarity=0.060 Sum_probs=100.1
Q ss_pred ChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHH
Q 041942 217 EMEKANELFNEVPK--R-DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293 (498)
Q Consensus 217 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 293 (498)
++++|...++...+ | +...+..+...|.+.|++++|...|++..+....... -..+.+..+-
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------~~~~~~~~~~-- 192 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-------------FSNEEAQKAQ-- 192 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-------------CCSHHHHHHH--
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-------------CChHHHHHHH--
Confidence 34444444444332 1 3456777777777788888888888777654311110 0001111110
Q ss_pred HHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-
Q 041942 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT- 369 (498)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~- 369 (498)
+.....+..+..+|.+.|++++|...+++..+ .+...|..+..+|...|++++|+..|+++++ +.|+
T Consensus 193 -------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~ 263 (336)
T 1p5q_A 193 -------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNN 263 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSC
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC
Confidence 01134556677777777888888777776652 3667888888888899999999999998888 4554
Q ss_pred HHHHHHHHHHHhhcCCHHHH-HHHHHHhHH
Q 041942 370 EITFVGVLVACSHAGKVEEG-KKYFKLMRD 398 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 398 (498)
...+..+..++.+.|+.++| ...++.|..
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777778888888888887 446666654
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.16 E-value=8e-06 Score=75.93 Aligned_cols=116 Identities=9% Similarity=0.039 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRL--------------KVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~--------------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
.|..+...+.+.|++++|+..|++.++. ...| +...|..+..++.+.|++++|.+.++++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--- 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--- 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH---
Confidence 3455566666666666666666666541 0122 245666777777778888888888877766
Q ss_pred CCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHH
Q 041942 402 IEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455 (498)
Q Consensus 402 ~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (498)
+.|+ ...|...|++++|...|+++++++|++..++..+..++...++.+++.+.
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 33444778888888888888888999999999999999888888777653
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=3.1e-05 Score=59.54 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=26.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTE----ITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+...+...|++++|...|+++.+. .|+. ..+..+..++.+.|++++|...++++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444555555555555555542 2221 2444444444555555555555544444
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.15 E-value=6.1e-06 Score=66.76 Aligned_cols=101 Identities=10% Similarity=-0.022 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CC---------CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRL-------KV---------RPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------~~---------~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
.+......+.+.|++++|+..|.+.+.. +- .|. ...|..+..++.+.|++++|...++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~- 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK- 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Confidence 4455566666667777777776666552 00 121 34556666666677777777777766666
Q ss_pred cCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCC-chHHHHH
Q 041942 400 YNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDES-GDYVLLS 440 (498)
Q Consensus 400 ~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~ 440 (498)
+.|+ ...|...|++++|...|+++++++|+++ .+...+.
T Consensus 92 --~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 92 --REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred --cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3344 2233366666666666666666666665 3343443
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=1.9e-05 Score=60.77 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=76.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCC---CchHHHHHH
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDE---SGDYVLLSN 441 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 441 (498)
+..+...+...|++++|...++.+.+..+-.|. ...|...|++++|...++++++..|++ +.++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344567788999999999999999884343331 334448999999999999999999999 677999999
Q ss_pred HHHhCCCchHHHHHHHHhhhCC
Q 041942 442 IYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
+|...|++++|...|+++.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999998754
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=3.1e-05 Score=57.60 Aligned_cols=94 Identities=12% Similarity=-0.015 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP--TEITFVGVLV 378 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~ 378 (498)
...+..+...+...|++++|...|++.. ..+...|..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 4455567777778888888888887654 2356778888889999999999999999998843 22 4777888888
Q ss_pred HHhhc-CCHHHHHHHHHHhHH
Q 041942 379 ACSHA-GKVEEGKKYFKLMRD 398 (498)
Q Consensus 379 ~~~~~-g~~~~a~~~~~~~~~ 398 (498)
.+... |++++|.+.++++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 99999 999999999998877
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=2.2e-05 Score=61.94 Aligned_cols=92 Identities=4% Similarity=-0.083 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----------hhHHHhhCChHHHHHHHHHHHccCCCCCchHH
Q 041942 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----------IRHYGVHGDVELGRLANKRLLNMRKDESGDYV 437 (498)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 437 (498)
+...+..+...+...|++++|...+++..+ ..|+ ...|...|++++|...++++++.+|+++.++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 467788888999999999999999999987 4565 22344899999999999999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 438 LLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.++.+|...|++++|...+++..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999998754
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.11 E-value=1.1e-05 Score=65.22 Aligned_cols=95 Identities=8% Similarity=-0.029 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc--------CC-------CCC--------hhHHHhhCChHHHHHHHHHHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEY--------NI-------EPN--------IRHYGVHGDVELGRLANKRLL 426 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~-------~p~--------~~~y~~~g~~~~a~~~~~~~~ 426 (498)
...+......+.+.|++++|...|.+..... .. .|. ...|.+.|++++|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456667788999999999999999988720 00 222 334449999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+++|+++.+|..++.+|...|++++|+..|++..+...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999987643
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.07 E-value=0.00038 Score=63.07 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 266 PDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 266 p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
++...+..++..|...|+.++|.+++
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45556666666666666666666666
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.07 E-value=0.00028 Score=63.91 Aligned_cols=230 Identities=12% Similarity=0.027 Sum_probs=120.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhccc-chhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhc-
Q 041942 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC- 153 (498)
Q Consensus 76 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 153 (498)
+-....+.+..++|+++++.+.... +-+...|+.--.++...| .+++++.+++.+.... +-+..+|+.-..++...
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhc
Confidence 3333444556678888888887743 224445666555555566 4788888888888764 34666776665555555
Q ss_pred C-ChhHHHHhhccCCCCCcc---hHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCC
Q 041942 154 G-DLNTASVLFDGDAKMDVV---AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229 (498)
Q Consensus 154 g-~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (498)
+ ++++++++++.+...++. +|+.-...+.+.|.++. .+ ...+.++.+.++++.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~----------~~-------------~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR----------IS-------------EAQWGSELDWCNEML 194 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC----------CC-------------HHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc----------cc-------------hhhHHHHHHHHHHHH
Confidence 5 666777777666554433 33332223322222220 00 000113444444333
Q ss_pred C---CChhhHHHHHHHHHhCCC-------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc---------------
Q 041942 230 K---RDVVSWNAMISGYVLCGM-------NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL--------------- 284 (498)
Q Consensus 230 ~---~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~--------------- 284 (498)
+ .|..+|+.....+.+.++ ++++++.+++.+... +-|...|+.+-..+.+.|+.
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~ 273 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK 273 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccccccccc
Confidence 2 344455554444444443 455566665555442 23444444444434333332
Q ss_pred -----hHHHHHHHHHHHhh----cCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 285 -----EVGKKVHCTLLDMT----SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 285 -----~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
........+..... ...++......|++.|...|+.++|.++++.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 12222221111111 114566777888999999999999999999886
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=1.2e-05 Score=61.79 Aligned_cols=63 Identities=5% Similarity=-0.024 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3567788888999999999999999988843 33567777888888888999888888888776
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=2.3e-06 Score=64.98 Aligned_cols=86 Identities=6% Similarity=0.075 Sum_probs=50.0
Q ss_pred hCCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHH
Q 041942 347 FHGFAEESIAMFREMQRLKV-RP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~ 424 (498)
..|++++|+..|++.++.+. .| +...+..+..++...|++++|...++++.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------------------------- 55 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-------------------------- 55 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------
Confidence 35778888888888887431 13 245666666777777777777777777666
Q ss_pred HHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 425 LLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+|+++.++..++.+|...|++++|+..+++..+
T Consensus 56 ---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 56 ---QFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---hCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555443
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=2.1e-05 Score=60.50 Aligned_cols=95 Identities=7% Similarity=0.054 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV--RPT----EITFV 374 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~ 374 (498)
...+..+...+...|++++|...|++..+ .+...+..+...|...|++++|...++++.+... .++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34566778888889999999999887653 4677888888899999999999999998877321 112 56677
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 375 GVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+..++...|++++|.+.++++.+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 777788888888888888887776
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=5e-06 Score=63.02 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=65.9
Q ss_pred hcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHH
Q 041942 316 KCGSIERAIEVFLGMRDR------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEE 388 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 388 (498)
..|++++|+..|++..+. +...|..+..+|...|++++|+..+++.++. .|+ ...+..+..++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 357888999999876643 3467889999999999999999999999984 454 7788888899999999999
Q ss_pred HHHHHHHhHHh
Q 041942 389 GKKYFKLMRDE 399 (498)
Q Consensus 389 a~~~~~~~~~~ 399 (498)
|...+++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988773
No 184
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.98 E-value=8e-06 Score=68.58 Aligned_cols=137 Identities=9% Similarity=-0.096 Sum_probs=82.4
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH----------------hhHHHHH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK----------------FTFSFVL 112 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~li 112 (498)
.|+++.+.+.|+... ......+..+...+.+.|++++|+..|++..+.. +.+. ..|..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHH
Confidence 567777777776543 2234567777888888999999999999987742 1121 5566666
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHH
Q 041942 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSM 189 (498)
Q Consensus 113 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 189 (498)
.++...|++++|...++...+.. +.+...+..+..+|...|++++|...|+.... .+...+..+..++...++.++
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777653 33555666666666666777766666664332 233444444444444444443
Q ss_pred H
Q 041942 190 A 190 (498)
Q Consensus 190 A 190 (498)
+
T Consensus 175 ~ 175 (198)
T 2fbn_A 175 K 175 (198)
T ss_dssp -
T ss_pred H
Confidence 3
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.95 E-value=3.1e-05 Score=62.07 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRL----KVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4555666677777777777777666542 1111 134566667777888888888888877665
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.89 E-value=0.00094 Score=60.15 Aligned_cols=78 Identities=6% Similarity=-0.055 Sum_probs=37.9
Q ss_pred hHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-chHHHHHH
Q 041942 218 MEKANELFNEVPK---RDVVSWNAMISGYVLCGM--NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD-LEVGKKVH 291 (498)
Q Consensus 218 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~ 291 (498)
++++..+++.+.. .+..+|+.-...+...++ +++++..++++.+.. +-+...|+.-...+...|. ++++...+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3455555554442 344555555555555552 556666666665543 2244444444444444444 25555555
Q ss_pred HHHHH
Q 041942 292 CTLLD 296 (498)
Q Consensus 292 ~~~~~ 296 (498)
...+.
T Consensus 169 ~~~I~ 173 (331)
T 3dss_A 169 DSLIT 173 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.89 E-value=6.5e-05 Score=72.45 Aligned_cols=115 Identities=7% Similarity=-0.007 Sum_probs=69.8
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHH
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAE 352 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 352 (498)
..+...|++++|...|++.+... +.+...+..+..+|.+.|++++|...+++..+ .+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34566777778877776555543 23455666677777777777777777765542 34566777777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHH--HhhcCCHHHHHHHHH
Q 041942 353 ESIAMFREMQRLKVRPT-EITFVGVLVA--CSHAGKVEEGKKYFK 394 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~ 394 (498)
+|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777663 343 3333333333 666677777777666
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=6.4e-06 Score=61.50 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhC
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g 413 (498)
...|..+...+...|++++|++.|++..+. .| +...+..+..++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--------------- 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------
Confidence 455666777777777777777777777763 34 355666666666666666666666665544
Q ss_pred ChHHHHHHHHHHHccCCCC------CchHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 414 DVELGRLANKRLLNMRKDE------SGDYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
++|++ ..++..++.++...|++++|+..++++
T Consensus 67 --------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 67 --------------YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp --------------SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred --------------hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 45555 556777888888888777776665544
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.86 E-value=0.0023 Score=57.64 Aligned_cols=140 Identities=9% Similarity=-0.005 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc------------
Q 041942 320 IERAIEVFLGMRD---RDVSTWSTLIGGLAFHGF-AEESIAMFREMQRLKVRPTEITFVGVLVACSHA------------ 383 (498)
Q Consensus 320 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------------ 383 (498)
+++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.++++++.. +-|...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 5555555555542 244455554444445555 355666666665532 12344444433333332
Q ss_pred --CCHHHHHHHHHHhHHhcCCCCC-hhH--HH----------------hhCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 041942 384 --GKVEEGKKYFKLMRDEYNIEPN-IRH--YG----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442 (498)
Q Consensus 384 --g~~~~a~~~~~~~~~~~~~~p~-~~~--y~----------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 442 (498)
+.++++.+.+..... ..|+ ... |. +.+.++++...+++++++.|++.-.+..++..
T Consensus 205 ~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 205 PENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp CHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 234555555555544 2333 111 11 12456778888888888888774333333322
Q ss_pred ---HHhCCCchHHHHHHHHhhhCC
Q 041942 443 ---YASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 443 ---~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.-..|..+++...+.++.+.+
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHhhcccccHHHHHHHHHHHHHhC
Confidence 113566777777777776543
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.85 E-value=1.5e-05 Score=62.68 Aligned_cols=98 Identities=7% Similarity=-0.068 Sum_probs=76.4
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHH
Q 041942 346 AFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 346 ~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~ 424 (498)
.+.+.+++|++.+++.++ ..| +...|..+..++...++++.+...++ .+++|+..|++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------~~~eAi~~le~ 71 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------MIQEAITKFEE 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------HHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------HHHHHHHHHHH
Confidence 345678889999999888 445 46777777777777776665554332 25678889999
Q ss_pred HHccCCCCCchHHHHHHHHHhCC-----------CchHHHHHHHHhhhCCC
Q 041942 425 LLNMRKDESGDYVLLSNIYASRG-----------EWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 464 (498)
+++++|++..+|..++.+|.+.| ++++|++.|++..+.+.
T Consensus 72 AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999998875 89999999999987543
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=0.00024 Score=68.13 Aligned_cols=125 Identities=11% Similarity=-0.009 Sum_probs=89.9
Q ss_pred HHhcCCHHHHHHHHhcCC-------CC----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 041942 314 YAKCGSIERAIEVFLGMR-------DR----DVSTWSTLIGGLAFHGFAEESIAMFREMQRL-----K-VRPT-EITFVG 375 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~-------~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~ 375 (498)
+...|++++|+.++++.. .+ -..+++.|...|...|++++|..++++.++. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344566666655554432 12 1357888899999999999999988887642 2 1233 467888
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHH
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRV 452 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A 452 (498)
|...|...|++++|+.++++..+ ++++. +.|++| .....+..++...|++++|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~----------------------i~~~~--lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYA----------------------ILLVT--HGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHH--TCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----------------------HHHHH--hCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999988766 33333 244444 4567888899999999999
Q ss_pred HHHHHHhhhC
Q 041942 453 EKVRKLMDDS 462 (498)
Q Consensus 453 ~~~~~~m~~~ 462 (498)
+.+|+++++.
T Consensus 455 e~~~~~~~~~ 464 (490)
T 3n71_A 455 EFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.78 E-value=0.00012 Score=57.75 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-------CCC-HHHH----HHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKV-------RPT-EITF----VGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-------~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|..+..++...|++++|+..+++.++ + .|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888899999999999999999999888 5 676 4556 6666777777777777777777665
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.00096 Score=65.59 Aligned_cols=184 Identities=7% Similarity=-0.040 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----------chHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD----------LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (498)
.++|++.++++.... +-+...|+.--.++...|+ ++++...++..+.... -+...|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcc
Confidence 356677777776553 2233344433333333333 4555555544443332 23333333333344444
Q ss_pred --CHHHHHHHHhcCCC---CChhHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 041942 319 --SIERAIEVFLGMRD---RDVSTWSTLIGGLAFHG-FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392 (498)
Q Consensus 319 --~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 392 (498)
+++++.+.++++.+ .|..+|+.-.-.+...| .++++++.++++++.. .-|...|+.....+.+.+...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~----- 195 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP----- 195 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC-----
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc-----
Confidence 44555555554442 23444444444444444 4555555555554422 112334433333322211100
Q ss_pred HHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchH
Q 041942 393 FKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451 (498)
Q Consensus 393 ~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (498)
. .+ +.. -...+.++++.+.+++++.++|++..+|..+...+.+.+++++
T Consensus 196 -----~-~~--~~~--~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 -----D-SG--PQG--RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp -----C-SS--SCC--SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred -----c-cc--ccc--cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0 00 000 0012567899999999999999999999999999999988655
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.72 E-value=0.00035 Score=67.01 Aligned_cols=92 Identities=13% Similarity=0.043 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVA 379 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~ 379 (498)
...|..+..+|.+.|++++|+..+++..+ .+...|..+..+|...|++++|+..|+++++ +.|+ ...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34555667777777777777777766552 3566777778888888888888888888877 4454 4566666677
Q ss_pred HhhcCCHHHHHH-HHHHhH
Q 041942 380 CSHAGKVEEGKK-YFKLMR 397 (498)
Q Consensus 380 ~~~~g~~~~a~~-~~~~~~ 397 (498)
+.+.|+.+++.+ .++.|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777766653 444443
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.68 E-value=0.0001 Score=53.84 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=39.0
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
..|++++|...|+++++++|+++.+|..++.+|...|++++|++.|++..+.
T Consensus 19 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 19 KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555555555568888888888999999999999998888887653
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.65 E-value=0.00015 Score=54.37 Aligned_cols=44 Identities=5% Similarity=-0.038 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 353 ESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|+..|++..+. .| +...+..+...+...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 47 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD 47 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 467777777773 34 466677777777777777777777777666
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00012 Score=54.37 Aligned_cols=97 Identities=13% Similarity=0.006 Sum_probs=72.6
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCC------hHH
Q 041942 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN------RFV 142 (498)
Q Consensus 69 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 142 (498)
+...|..+...+...|++++|++.|++..+.. +.+...|..+..++...|++++|...+++.++... .+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHH
Confidence 45667778888888999999999998887753 34667788888888888999999999988887532 22 455
Q ss_pred HHHHHHHHHhcCChhHHHHhhccCC
Q 041942 143 RNSLIYFHANCGDLNTASVLFDGDA 167 (498)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~ 167 (498)
+..+..++...|+.+.|...++++.
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 6667777777777777777666654
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.62 E-value=0.0002 Score=50.87 Aligned_cols=82 Identities=18% Similarity=0.324 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhC
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g 413 (498)
...+..+...+...|++++|+..+++..+. .| +...+..+...+.+.|++++|...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~-------------------- 66 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYY-------------------- 66 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHH--------------------
Confidence 345555666666666666666666666653 23 3444444445555555554444444
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
+++++.+|.++.++..++.++...|
T Consensus 67 ---------~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 67 ---------QKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---------HHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ---------HHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 4444456777777777777776543
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.57 E-value=0.00031 Score=64.37 Aligned_cols=140 Identities=9% Similarity=-0.079 Sum_probs=60.3
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (498)
..|..+...+.+.|++++|+..|++.... .|+... +...++...+...+ ...+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 35666777788888999999998887763 344321 11222222221111 012455555556
Q ss_pred HhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHH-HHhcCChHHHHH
Q 041942 151 ANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITG-YAKQGEMEKANE 223 (498)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~A~~ 223 (498)
.+.|++++|...|+.... .+...|..+..++...|++++|...|++.. +.+...+..+... ....+..+.+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665554332 234455555666666666666666666655 2223333333333 223344555555
Q ss_pred HHhhCC
Q 041942 224 LFNEVP 229 (498)
Q Consensus 224 ~~~~~~ 229 (498)
.|..+.
T Consensus 321 ~~~~~l 326 (338)
T 2if4_A 321 MYKGIF 326 (338)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 555554
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.53 E-value=0.0007 Score=62.77 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=56.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVA 379 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~ 379 (498)
...+..+..+|.+.|++++|+..+++..+ .+...|..+..+|...|++++|+..|+++.+ +.|+ ...+..+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 45556677777777777777777766553 2456777777777788888888888887777 3453 4555555555
Q ss_pred HhhcCCHHHHHH
Q 041942 380 CSHAGKVEEGKK 391 (498)
Q Consensus 380 ~~~~g~~~~a~~ 391 (498)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.52 E-value=0.00052 Score=53.45 Aligned_cols=109 Identities=7% Similarity=-0.002 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHh----hCChHHHHH
Q 041942 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN----IRHYGV----HGDVELGRL 420 (498)
Q Consensus 349 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~----~g~~~~a~~ 420 (498)
+++++|+++|++..+.| .|+.. |...|...+..++|.+++++..+ .|...- ...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-LNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 35667777777777665 23322 55555666666777777777666 322111 222223 567888888
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHh----CCCchHHHHHHHHhhhCCCc
Q 041942 421 ANKRLLNMRKDESGDYVLLSNIYAS----RGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 465 (498)
.|+++.+. .++.++..|+..|.. .+++++|+..|++..+.|..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 88888764 677889999999999 89999999999999998864
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.42 E-value=0.00022 Score=51.73 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=54.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPT-EI-TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELG 418 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a 418 (498)
....+...|++++|+..++++.+. .|+ .. .+..+..++...|++++|.+.+++..+ ..|+.......+.+.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~a 80 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE---LNPDSPALQARKMVMDI 80 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHH
Confidence 345667778888888888888773 453 45 677777777788888888888877766 34432221122455555
Q ss_pred HHHHHHHHccCCCC
Q 041942 419 RLANKRLLNMRKDE 432 (498)
Q Consensus 419 ~~~~~~~~~~~~~~ 432 (498)
...|+++...+|++
T Consensus 81 ~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 81 LNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHCCTTHHHHCC
T ss_pred HHHHHHHhccCccc
Confidence 55555555554444
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.40 E-value=0.0012 Score=63.27 Aligned_cols=63 Identities=10% Similarity=-0.086 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQR-----LKV-RPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+++.|...|...|++++|+.++++..+ .|- .|+ ..+...+-.++...|.+++|+.++.++++
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888877654 231 122 33445556777788888888888888876
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.27 E-value=0.001 Score=62.68 Aligned_cols=91 Identities=12% Similarity=0.006 Sum_probs=69.1
Q ss_pred hCCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHH
Q 041942 347 FHGFAEESIAMFREMQR---LKVRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~---~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~ 419 (498)
..|++++|+.++++..+ .-+.|+ ..+++.|..+|...|++++|+.++++..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 35788999999888765 223343 46788899999999999999999988766
Q ss_pred HHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 420 LANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 420 ~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
++++.. .|+++ ..++.|+.+|..+|++++|+.++++..+
T Consensus 369 -i~~~~l--G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 -PYSKHY--PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp -HHHHHS--CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHc--CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 333332 33333 5688999999999999999999998864
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.25 E-value=0.00044 Score=50.07 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=35.0
Q ss_pred HHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hh--------HHHhhCChHHHHHHHHHHHccCCCCCchH
Q 041942 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPN-IR--------HYGVHGDVELGRLANKRLLNMRKDESGDY 436 (498)
Q Consensus 377 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~--------~y~~~g~~~~a~~~~~~~~~~~~~~~~~~ 436 (498)
...+.+.|++++|...++++.+ ..|+ .. .|...|++++|...|+++++++|+++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQ---TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH---HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455666777777777777666 2333 11 22366677777777777777777666555
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.21 E-value=0.037 Score=57.20 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=109.7
Q ss_pred HHHHhcCChhHHHH-hhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHh
Q 041942 148 YFHANCGDLNTASV-LFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226 (498)
Q Consensus 148 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 226 (498)
......+++++|.+ ++..+. +......++..+.+.|.++.|+++.+.- ..-.......|+++.|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHH
Confidence 33446788888888 664443 1223367777788888888888776421 122445677899999999987
Q ss_pred hCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh
Q 041942 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306 (498)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (498)
.+. +...|..+...+.+.++++.|...|.++.. |..+...+...|+.+...++- +.....+.
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~-~~a~~~~~------ 738 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA-KDAETTGK------ 738 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH-HHHHHTTC------
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH-HHHHHcCc------
Confidence 763 567899999999999999999999988752 334444555566666655554 33333321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Q 041942 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360 (498)
Q Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (498)
++....+|.+.|++++|.+++ .+.+++++|..+-+.
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 133444566677777776665 445677777765544
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.21 E-value=0.0057 Score=47.43 Aligned_cols=110 Identities=11% Similarity=-0.002 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh----cCCHHH
Q 041942 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK----CGSIER 322 (498)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 322 (498)
+++++|+..|++..+.| .|+.. +...|...+.+++|...|++.... + ++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 35667777777777766 33333 555555556666677777444432 2 23344445555555 455555
Q ss_pred HHHHHhcCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 041942 323 AIEVFLGMRD-RDVSTWSTLIGGLAF----HGFAEESIAMFREMQRLK 365 (498)
Q Consensus 323 A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~ 365 (498)
|...|++..+ .++..+..|...|.. .+++++|.++|++..+.|
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554432 344555555555555 555666666666555544
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.18 E-value=0.00073 Score=48.24 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
.++|...++++++++|+++.++..++..+.+.|++++|+..++++.+....
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 577888888888899999999999999999999999999999999987664
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.17 E-value=0.0029 Score=44.48 Aligned_cols=82 Identities=9% Similarity=-0.069 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHH
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF 149 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 149 (498)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4466677777778888888888888877643 3356667777777778888888888888887764 3345566666555
Q ss_pred HHhc
Q 041942 150 HANC 153 (498)
Q Consensus 150 ~~~~ 153 (498)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.17 E-value=0.0019 Score=61.02 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=70.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCC
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLK---VRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGD 414 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~ 414 (498)
+..+...|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.+++++.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~---------------- 357 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME---------------- 357 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----------------
Confidence 455667899999999999987631 2333 45788888999999999999999988766
Q ss_pred hHHHHHHHHHHHccCCCC---CchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 415 VELGRLANKRLLNMRKDE---SGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
++++.. .|++ ...++.|+.+|...|++++|+.++++..+
T Consensus 358 ------i~~~~l--g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 358 ------PYRIFF--PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ------HHHHHS--CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------hHHHHc--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 233322 2333 34677888888888888888888887753
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.11 E-value=0.002 Score=46.75 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=36.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 041942 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297 (498)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 297 (498)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455556666666666666666666665543 223445555566666666666666666444443
No 212
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.09 E-value=0.0013 Score=49.04 Aligned_cols=64 Identities=13% Similarity=0.002 Sum_probs=38.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 041942 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 296 (498)
+...+..+...|...|++++|...|++..+.. +.+...+..+..++...|++++|...|++.+.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666666666666543 23445556666666666666666666644444
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.07 E-value=0.0029 Score=58.72 Aligned_cols=386 Identities=9% Similarity=0.010 Sum_probs=209.4
Q ss_pred ChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 041942 36 DSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115 (498)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 115 (498)
.+.+|+.|-. +..+ .+.+.+|.+-|-+ ..|+..|..+|....+.|.+++-+..+...++..- ++..=+.|+-+|
T Consensus 53 ~p~VWs~Lgk-AqL~-~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAK-AQLQ-KGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHH-HTTT-SSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred CccHHHHHHH-HHHc-cCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 3556666666 6666 6777777665533 45566688888888888888888888876665433 334445677788
Q ss_pred hcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCC------------------------CCCc
Q 041942 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA------------------------KMDV 171 (498)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~ 171 (498)
++.++..+.++++ -.|+..-...+.+-|...|.++.|.-+|..+. ..++
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 8887766544333 13555556667777888888888877775322 1367
Q ss_pred chHHHHHHHHHhcCChHHHHHH------------------------------HhcCC---CCCcchHHHHHHHHHhcCCh
Q 041942 172 VAWSSLTAGYARRGELSMARSL------------------------------FDEMP---VRDLVSWNVMITGYAKQGEM 218 (498)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~A~~~------------------------------~~~~~---~~~~~~~~~l~~~~~~~~~~ 218 (498)
.||..+-.+|...+.+..|.-. ++.-. ..-.-.|+-|.-.|++- +.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 7888888888877765544322 11111 11222455555555544 33
Q ss_pred HHHHHHHhhCCC-----------CChhhHHHHHHHHHhCCChHHHHHHH-------------HHHHhCCCCCCHHHHHHH
Q 041942 219 EKANELFNEVPK-----------RDVVSWNAMISGYVLCGMNKQALEMF-------------EEMRSVGERPDDVTMLSL 274 (498)
Q Consensus 219 ~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~-------------~~m~~~g~~p~~~~~~~l 274 (498)
++..+-++..-. .....|.-++-.|.+-.+++.|.... ++++.. ..+...|-..
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKA 356 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRA 356 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHH
Confidence 333333332221 13456777777777777777654321 111111 2233333333
Q ss_pred HHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-HHHHHHHHHHhCCCHHH
Q 041942 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS-TWSTLIGGLAFHGFAEE 353 (498)
Q Consensus 275 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 353 (498)
|.-|.... +..--+++ ..+. ...|. +..++.+.+.|++.-...++..+...|.. .-.++-..|....+++.
T Consensus 357 i~FYL~e~-P~lL~DLL-~vL~---prlDh---~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 357 IQFYLEFK-PLLLNDLL-MVLS---PRLDH---TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp HHHHTTSC-CTTSHHHH-HHHC---TTCCS---TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhC-hHHHHHHH-Hhcc---ccCCh---HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 44333221 11122222 1111 11111 13455566677777777777777665544 44456667777777654
Q ss_pred HH------------HHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHhhCChHHHHH
Q 041942 354 SI------------AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYGVHGDVELGRL 420 (498)
Q Consensus 354 A~------------~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~~g~~~~a~~ 420 (498)
-. .+-.++.+. +-...-......|.+.++|+++..+.++ .++-.| +++-...|+.+-++.
T Consensus 429 LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk----DklykDAietAa~S~~~elaee 501 (624)
T 3lvg_A 429 LRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK----DSLYKDAMQYASESKDTELAEE 501 (624)
T ss_dssp HHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST----TCCTTGGGTTTTTCCCTTHHHH
T ss_pred HHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh----cccHHHHHHHHHHcCCHHHHHH
Confidence 32 222233221 1112222333556777778777765532 233344 444446788888888
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
+++-+++.+ +...+......|...=+++-+++
T Consensus 502 LL~yFv~~g--~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 502 LLQWFLQEE--KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHHHHHHC--STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHHHHcC--chHHHHHHHHHHhhccChHHHHH
Confidence 888877543 33445555555544444444443
No 214
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.05 E-value=0.0096 Score=58.48 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=67.2
Q ss_pred chHHHHHHHHHhcC--ChHHHHHHHhcCC---CCCcchHHHHHHHHHhcC-ChHHHHHHHhhCCC---CChhhHHHHHHH
Q 041942 172 VAWSSLTAGYARRG--ELSMARSLFDEMP---VRDLVSWNVMITGYAKQG-EMEKANELFNEVPK---RDVVSWNAMISG 242 (498)
Q Consensus 172 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~ 242 (498)
.+|+.-...+.+.+ ++++++..++++. +.+...|+.-..+..+.| ..+++.+.++++.+ .|..+|+.....
T Consensus 108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~l 187 (567)
T 1dce_A 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHH
Confidence 34444444444555 4466666666555 444555655555556666 66666676666664 244556655555
Q ss_pred HHhC--------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchH
Q 041942 243 YVLC--------------GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286 (498)
Q Consensus 243 ~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 286 (498)
+.+. +.++++++.+++..... +-+...|..+-..+...++.++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 4442 44688888888877653 3356677777667766666443
No 215
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.87 E-value=0.001 Score=52.33 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=65.9
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCC----------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh
Q 041942 317 CGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGF----------AEESIAMFREMQRLKVRPT-EITFVGVLVACSH 382 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 382 (498)
.+.+++|...++...+ .+...|..+..++...++ +++|+..|++.++ +.|+ ..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHH
Confidence 3445566666655442 255566666666666554 5699999999999 6675 6788888888887
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
.|.+ .|+. -...|++++|...|+++++++|++...
T Consensus 93 lg~l----------------~P~~--~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 93 FAFL----------------TPDE--TEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHH----------------CCCH--HHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hccc----------------Ccch--hhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 6632 3331 112467888888888888888887533
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.62 E-value=0.12 Score=53.45 Aligned_cols=27 Identities=26% Similarity=0.139 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcC
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGM 330 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (498)
...|..+...+.+.++++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344445555555555555555554443
No 217
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.57 E-value=6.1e-05 Score=69.53 Aligned_cols=254 Identities=14% Similarity=0.125 Sum_probs=171.9
Q ss_pred CChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHH
Q 041942 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132 (498)
Q Consensus 53 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 132 (498)
+++++|.+.-++...| .+|..|..+....+++.+|++.|-+. -|+..|..+|.++.+.|.++.-...+....
T Consensus 39 ~~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CCSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred cccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3455555544444344 45889999999999999998876332 366778999999999999999999888776
Q ss_pred HhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC--------------
Q 041942 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-------------- 198 (498)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------- 198 (498)
+. ..++.+=+.|+-+|++.+++.+-++++.. |+......+..-|...|.++.|.-+|..+.
T Consensus 111 k~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 111 KK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp TT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred HH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 65 33555667899999999998876655543 566666777888888888888888877665
Q ss_pred ----------CCCcchHHHHHHHHHhcCChHHHHHHHh-hCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 041942 199 ----------VRDLVSWNVMITGYAKQGEMEKANELFN-EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267 (498)
Q Consensus 199 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 267 (498)
..++.||..+..+|...+++.-|.-.-- -+..++. ...++..|-..|.+++-+.+++.-.... +..
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAH 262 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAH 262 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCC
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chh
Confidence 3467889999889998888776644322 2222211 1235566778888888888888776332 456
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHh-hcC------CcchhhHHHHHHHHHhcCCHHHHH
Q 041942 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDM-TSG------VAKVLHGNALIDMYAKCGSIERAI 324 (498)
Q Consensus 268 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~~l~~~~~~~~~~~~A~ 324 (498)
...|+.|.-.|++- ++++..+.+ ++.-. -++ ......|.-++-.|.+-.+++.|.
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHl-klf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHL-ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHH-TTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHH-HHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 67777777777664 444444444 22111 111 112455667777777777777664
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.52 E-value=0.042 Score=49.79 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~ 410 (498)
.+..+|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.+++... +.|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 46677777777777778888888888888884 37777776677777788888888888888766 566655553
No 219
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.50 E-value=0.0096 Score=45.54 Aligned_cols=109 Identities=8% Similarity=0.035 Sum_probs=55.3
Q ss_pred CChhHHHHHHHHHHhCCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 333 RDVSTWSTLIGGLAFHGFA------EESIAMFREMQRLKVRPTEI-TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
.|..+|-..+....+.|+. ++..++|++.... ++|+.. .|...+..+.+ ...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIr-------------YA~------- 69 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVR-------------FAE------- 69 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHH-------------HHH-------
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHH-------------HHH-------
Confidence 4677777777777777777 7777777777763 556521 11111111110 000
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
|...++.++|+.+|+.++++...-+.+|...+..-.++|+...|.+++.+....+.+
T Consensus 70 ---~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 70 ---LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp ---HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ---HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 002234444555555554443333445555555555555555555555555554443
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.48 E-value=0.12 Score=46.80 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=60.7
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041942 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMR--DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376 (498)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 376 (498)
+.+...+.++...+...|++++|...+++.. .|+...|..+...+...|++++|.+.|++... +.|...+|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 5567777777777777899999999998876 46766777888889999999999999999998 67888776543
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.35 E-value=0.014 Score=50.60 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=33.9
Q ss_pred hCChHHHHHHHHHHHccCCCC-CchHHHHHHHHHhC-CCchHHHHHHHHhhhCCCc
Q 041942 412 HGDVELGRLANKRLLNMRKDE-SGDYVLLSNIYASR-GEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 465 (498)
.|+.++|++.|+++++++|+. ..++..++..++.. |++++|.+.+++.......
T Consensus 217 gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 217 GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 355666666666666666653 66666666666663 6666666666666665555
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.10 E-value=0.015 Score=54.72 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=65.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-------C-C---hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 041942 311 IDMYAKCGSIERAIEVFLGMRD-------R-D---VSTWSTLIGGLAFHGFAEESIAMFREMQRL-----K-VRPT-EIT 372 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~-------~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~ 372 (498)
+..+.+.|++++|+.++++..+ + + ..+++.+...|...|++++|+.++++++.. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445567788888877764431 2 2 357888999999999999999999987642 2 1233 457
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888999999999999999988766
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.08 E-value=0.014 Score=55.04 Aligned_cols=63 Identities=8% Similarity=-0.039 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRL-----K-VRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|...|..+|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 35556666666666666666666655431 1 1122 34566666666666777776666666554
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.07 E-value=0.053 Score=42.08 Aligned_cols=84 Identities=7% Similarity=-0.061 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHH
Q 041942 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAG---KVEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELG 418 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a 418 (498)
...+.+-|.+....|. ++..+...+..++++.+ +.++++.+++.+.+. . .|+ ...|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455566666666553 67777777777777777 566888888887773 2 242 2333488888888
Q ss_pred HHHHHHHHccCCCCCchHH
Q 041942 419 RLANKRLLNMRKDESGDYV 437 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~ 437 (498)
++.++.+++.+|++..+..
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 8888888889998765443
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.88 E-value=0.3 Score=36.64 Aligned_cols=137 Identities=10% Similarity=0.051 Sum_probs=85.7
Q ss_pred hcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYF 393 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 393 (498)
-.|.+++..++..+... .+..-||-+|.-....-+-+-..+.++..-+- +..+ ..-...++.+|.+.|...+-..+-
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDis~C~NlKrVi~C~~~~n~~se~vd~A 97 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINNTLNEHVNKA 97 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh-cCcHhhhcHHHHHHHHHHhcchHHHHHHH
Confidence 35667777777766553 34555666665555555656566655554331 1111 112334455555555432211111
Q ss_pred HHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 394 KLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 394 ~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
.......|+.++-.+++..++...+.++.....++.+|.+.|+..+|.++++++-++|++
T Consensus 98 ------------Ld~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 98 ------------LDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------HHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 111124677888888888876677888999999999999999999999999999999986
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.52 Score=37.54 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=47.0
Q ss_pred HhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHH
Q 041942 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292 (498)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 292 (498)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+...++-
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla- 83 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ- 83 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH-
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH-
Confidence 3455555555554443 2344555555555555555555555554431 223333344444444444433
Q ss_pred HHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
+.....+. ++.....+...|+++++.++|.+..
T Consensus 84 ~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 22222221 1233334445566666666665543
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.71 E-value=0.079 Score=37.45 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 334 DVSTWSTLIGGLAFHGF---AEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|+..+..+..++...++ .++|..++++..+ ..|+ ......+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555543333 5666666666666 4454 45555555666666666666666666655
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.29 Score=39.00 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=20.1
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (498)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344444444444433 2344455555555555555555544444
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.63 E-value=0.059 Score=39.08 Aligned_cols=63 Identities=8% Similarity=-0.121 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLK------VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.-+..+...+...|++..|..+|+...+.- -.+....+..|..++.+.|+++.|...++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 345567788888888888888888876531 112355666777777777777777777777665
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.47 E-value=0.045 Score=47.54 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhc-----CCHHHHHHHHHHhHHhcCCCCC--h-------hHHHh-h
Q 041942 351 AEESIAMFREMQRLKVRPT---EITFVGVLVACSHA-----GKVEEGKKYFKLMRDEYNIEPN--I-------RHYGV-H 412 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~--~-------~~y~~-~ 412 (498)
...|...+++.++ +.|+ ...|..+...|.+. |+.++|.+.|++..+ +.|+ + ..+.. .
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhc
Confidence 4667777777777 5676 45677777777773 888888888888877 4553 1 12224 4
Q ss_pred CChHHHHHHHHHHHccCCCC
Q 041942 413 GDVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~ 432 (498)
|+.+++.+.++++++.+|..
T Consensus 254 gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGG
T ss_pred CCHHHHHHHHHHHHcCCCCC
Confidence 78888888888888777663
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.46 E-value=0.08 Score=38.37 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCC----CC--------hhHHHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE----PN--------IRHYGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 368 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
.+......+...+.+.|+++.|...++...+...-. ++ ...|.+.|+++.|...++++++++|+++.+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 345556677888899999999999999987732111 11 334448888888888888888888888766
Q ss_pred HHHH
Q 041942 436 YVLL 439 (498)
Q Consensus 436 ~~~l 439 (498)
...+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 5544
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.55 E-value=0.36 Score=35.95 Aligned_cols=84 Identities=7% Similarity=-0.109 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHH---HHHHHHHhHHhcCCCCC---------hhHHHhhCChHH
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE---GKKYFKLMRDEYNIEPN---------IRHYGVHGDVEL 417 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~ 417 (498)
....+.+-|.+....|. |+..+--.+..++.+..+... ++.+++.+.+. -.|+ +..+.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHH
Confidence 33444555555544443 666666666777777776555 66666666552 1132 222337777777
Q ss_pred HHHHHHHHHccCCCCCchH
Q 041942 418 GRLANKRLLNMRKDESGDY 436 (498)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~ 436 (498)
|++.++.+++.+|++..+.
T Consensus 93 A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHH
Confidence 7777777777777775443
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.46 E-value=2.9 Score=38.38 Aligned_cols=218 Identities=11% Similarity=0.005 Sum_probs=112.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCCchHHHHHHHHHHHhhc-CCcchhhHHH--
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPD-----DVTMLSLLTACADLGDLEVGKKVHCTLLDMTS-GVAKVLHGNA-- 309 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~-- 309 (498)
.++..|...|++.+|..++.++.+.=-..| ...+..-+..|...+++.++...+.+...... +.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467777888888888777777764211112 12344555667777888888877744433322 2233333211
Q ss_pred --HHHHHH-hcCCHHHHHHHHhcCC----C---C---ChhHHHHHHHHHHhCCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 041942 310 --LIDMYA-KCGSIERAIEVFLGMR----D---R---DVSTWSTLIGGLAFHGFAEESIAMFR-EMQRLKVRPTEITFVG 375 (498)
Q Consensus 310 --l~~~~~-~~~~~~~A~~~~~~~~----~---~---~~~~~~~l~~~~~~~~~~~~A~~~~~-~m~~~~~~p~~~~~~~ 375 (498)
-...+. ..+++..|...|-+.- + + +...|..+ .+..... ..+.-.++. +....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~~~-r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIMLGQ-SDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTTC-GGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHcCC-HHHHHHHhccccccccCCccHHHHHH
Confidence 122344 5777777776654321 1 1 12233222 2222222 222222221 2111112355555666
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHH--HHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHH
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELG--RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (498)
++.++ ..+++.....+++..... +..|.........+-+. ...+.++. .|=.......++..+.- ..++++
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~--l~~D~~l~~h~~~L~~~Ir~~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE 334 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKE--LAEDVIVQAHLGTLYDTMLEQNLCRII--EPYSRVQVAHVAESIQL--PMPQVE 334 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTT--TTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHH--HhcChHHHHHHHHHHHHHHHHHHHHHh--HhhceeeHHHHHHHHCc--CHHHHH
Confidence 66654 457887777777765442 34443221111111111 11222222 35566778888877754 688999
Q ss_pred HHHHHhhhCCC
Q 041942 454 KVRKLMDDSDI 464 (498)
Q Consensus 454 ~~~~~m~~~~~ 464 (498)
..+-+|...|.
T Consensus 335 ~~L~~lI~dg~ 345 (394)
T 3txn_A 335 KKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHCCC
Confidence 99999998886
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.98 E-value=1.4 Score=33.02 Aligned_cols=140 Identities=9% Similarity=0.007 Sum_probs=87.0
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHH
Q 041942 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322 (498)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (498)
+.-.|..++..+++.+..... +..-++-+|--....-+-+-..++++..-.-..+.+.. -...++.+|.+.|.
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~-NlKrVi~C~~~~n~--- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT--- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhh-cHHHHHHHHHHhcc---
Confidence 344577777777777776432 34445555555555555555555552221111111111 11334444444432
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCC
Q 041942 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402 (498)
Q Consensus 323 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 402 (498)
+....+..+..+..+|+-++-.+++..+.. +-+|++.....+..+|.+.|+..+|.+++.+.-+ .|+
T Consensus 90 -----------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG~ 156 (172)
T 1wy6_A 90 -----------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-KGE 156 (172)
T ss_dssp -----------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred -----------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hhh
Confidence 344556667788889999999999888654 3578888888899999999999999999988877 454
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.96 E-value=5.2 Score=39.36 Aligned_cols=72 Identities=15% Similarity=0.039 Sum_probs=33.5
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCC---CCChhhHHHHHHHHHhCCC
Q 041942 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP---KRDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 248 (498)
..+..+.+.+++...+.++.. .+.+...--....+....|+..+|......+- .........++..+.+.|.
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC
Confidence 344555566666666665555 33333333334455555666544444333221 1223344445555544443
No 236
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.86 E-value=0.31 Score=37.81 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 369 (498)
+-.+.-+|.+.|++++|.+.++.+.+ +.|+
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 34455556677777777777777776 5564
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.74 E-value=0.51 Score=47.39 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=47.2
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
..|+++-|..+.++++..-|.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 349 ~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 67889999999999999999999999999999999999999999999984
No 238
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.65 E-value=2.6 Score=34.78 Aligned_cols=109 Identities=9% Similarity=0.040 Sum_probs=49.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 041942 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 248 (498)
++...-...+.++.+.++.+..-.+.+.+..++..+-...+.++.+.+..+....+...+.+++..+-...+.++.+.+.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34333334444444444433333333333344444444555555555554444444444445555555555555555554
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 281 (498)
.++...+..+.+. ++..+-...+.++...
T Consensus 173 -~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 173 -ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp -HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred -hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 3444444444432 3444444444444443
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.19 E-value=0.42 Score=44.23 Aligned_cols=124 Identities=11% Similarity=-0.040 Sum_probs=81.6
Q ss_pred ChhHHHHHHHHH---HhCCCHHHHHHHHHHHHHC--CC-CCCHH--HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 334 DVSTWSTLIGGL---AFHGFAEESIAMFREMQRL--KV-RPTEI--TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 334 ~~~~~~~l~~~~---~~~~~~~~A~~~~~~m~~~--~~-~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
|...|..++... ...|+.+.|...+.++... |- -++.. .|..-...... +.+-.+.. --
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~--------~~~~~a~~-----~~ 177 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALV--------EDKVLAHT-----AK 177 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHH--------HHHHHHHH-----HH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHH--------HHHHHHHH-----HH
Confidence 455566655433 3468899999999988873 31 12221 11111111111 11111111 01
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh-----CCCccCCce
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD-----SDIKKQPGC 470 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 470 (498)
...+...|+.+++...++.++..+|-+-..|..++.+|...|+..+|++.|++..+ .|+.|.+..
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 23445789999999999999999999999999999999999999999999998754 488876654
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.62 E-value=1.6 Score=33.51 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCChhhHHHHHHHHhccCCh------HHHHHHHHHHHhCCCCCCHh-h---HHHHHHHh---hcccchhhHHHHHHHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNP------LDAVFLYTQMEKCSIKPNKF-T---FSFVLKAC---TRLLYRNMGFCVHGKIVK 133 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~-~---~~~li~~~---~~~~~~~~a~~~~~~~~~ 133 (498)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. . |..+---| ...++.+.|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55677888888888878888 8888888887764 566532 1 21111111 123788889999998877
Q ss_pred hCCCCChHHHHHHHHHHHhcCChhHHHHhhcc
Q 041942 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
.+-.. ..+|......-.++|++..|.+++..
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 64333 77788888888888888888888864
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.12 E-value=1.9 Score=39.81 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH----hcCCCCChhHHHhhC
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD----EYNIEPNIRHYGVHG 413 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~y~~~g 413 (498)
...++..+...|++.+|+..+..+.... +.+...+..++.++.+.|+..+|.+.|+.+.+ +.|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l----- 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL----- 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH-----
Confidence 3456777888999999999999888742 34788999999999999999999999988655 4799998554
Q ss_pred ChHHHHHHHHHHHccCCCC
Q 041942 414 DVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~ 432 (498)
.++++.++..+|..
T Consensus 248 -----~~l~~~il~~~~~~ 261 (388)
T 2ff4_A 248 -----RALNERILRQQPLD 261 (388)
T ss_dssp -----HHHHHHHHTTCCCC
T ss_pred -----HHHHHHHHcCCCCC
Confidence 45666666655543
No 242
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=92.00 E-value=4.5 Score=33.27 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=64.3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 041942 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 248 (498)
++...-...+.++.+.+..+....+.+.+..++..+-...+.++.+.++.+....+.+.+..++...-...+.++...|.
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 33333334444444444443333333444455655666666666676765555555555556666666666666666665
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 296 (498)
.+ +...+..+.. .++..+-...+.++...+. ..+...+...+.
T Consensus 142 ~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 142 ER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp GG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 43 3334444432 3455555666666666665 334444434443
No 243
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.64 E-value=4.7 Score=32.81 Aligned_cols=49 Identities=10% Similarity=0.040 Sum_probs=19.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 041942 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247 (498)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 247 (498)
.++..+-...+.++.+.++.+....+...+..++...-...+.++...|
T Consensus 118 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3343333344444444444333333333333344444334444444443
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.54 E-value=8.4 Score=36.21 Aligned_cols=180 Identities=8% Similarity=0.011 Sum_probs=99.2
Q ss_pred CChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh--HHHHHHHHHhcCC
Q 041942 247 GMNKQALEMFEEMRS-----VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH--GNALIDMYAKCGS 319 (498)
Q Consensus 247 g~~~~a~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 319 (498)
|++++|++.+..+.+ ............++..|...++++...+.+.-+....|......+ .+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 455666655544442 123334555666677777777777776666333333333222211 1112222222222
Q ss_pred --HHHHHHHHhcCCC---C-------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHhh
Q 041942 320 --IERAIEVFLGMRD---R-------DVSTWSTLIGGLAFHGFAEESIAMFREMQR--LKVRPT---EITFVGVLVACSH 382 (498)
Q Consensus 320 --~~~A~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~~p~---~~~~~~l~~~~~~ 382 (498)
.+.-..+.+.+.. . .......|...|...|++.+|..++.++.. .|.... ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2223334443331 1 123446688889999999999999998764 222222 3456667788999
Q ss_pred cCCHHHHHHHHHHhHHh-cCCC--CC---------hhHHHhhCChHHHHHHHHHHH
Q 041942 383 AGKVEEGKKYFKLMRDE-YNIE--PN---------IRHYGVHGDVELGRLANKRLL 426 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~~-~~~~--p~---------~~~y~~~g~~~~a~~~~~~~~ 426 (498)
.+++.+|..++.++... .... |+ +..+...+++.+|-+.|..+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999887531 1122 22 222225667777766666654
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.92 E-value=8 Score=34.13 Aligned_cols=125 Identities=9% Similarity=-0.021 Sum_probs=69.7
Q ss_pred hhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHH----HHHHHhCCCCCCHhhHHHHHHHhhcccchh-
Q 041942 48 SVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFL----YTQMEKCSIKPNKFTFSFVLKACTRLLYRN- 122 (498)
Q Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~li~~~~~~~~~~- 122 (498)
|.+ .+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+......+
T Consensus 43 y~~-~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~ 110 (312)
T 2wpv_A 43 YVR-SKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEP 110 (312)
T ss_dssp HHH-TTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCT
T ss_pred HHH-hcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 444 5566666665422 23334566776665553 455556677888877777777665532111
Q ss_pred hHHHHHHHHH----HhC--CCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhc
Q 041942 123 MGFCVHGKIV----KYG--FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184 (498)
Q Consensus 123 ~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (498)
.-.++++.++ +.| ..-++.....+...|.+.|++.+|+..|-.....|...+..++.-+...
T Consensus 111 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 111 NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 1233333333 332 1235667777777777777777777766533333455565555555544
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.82 E-value=1.8 Score=33.94 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
.+..+|.+.+++++|+.+++.+.
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 35566666666666666666664
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.63 E-value=2.6 Score=45.31 Aligned_cols=184 Identities=13% Similarity=0.057 Sum_probs=107.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-------------------------
Q 041942 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK------------------------- 230 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------- 230 (498)
.++..+...+.++.+..+..-.. .++...-.+..++...|++++|.+.|.+...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 45555666666666655544433 2222223445566667777777777765531
Q ss_pred -CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchh
Q 041942 231 -RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD----VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305 (498)
Q Consensus 231 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (498)
.-..-|..++..+-+.+.++.+.+.-+..++...+-+. ..|..+..++...|++++|...+ -.+.... .-..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL-~~~pd~~--~r~~ 972 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL-MVLSTTP--LKKS 972 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH-HHHHHSS--SCHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH-HhCCCHH--HHHH
Confidence 01124677888888889988888877766543222221 25777888889999999998877 3333222 2234
Q ss_pred hHHHHHHHHHhc------------CCHHHHHHHHhcCC------CCChhHHHHHHHHHHhCCCHHHHHHH-HHHHHH
Q 041942 306 HGNALIDMYAKC------------GSIERAIEVFLGMR------DRDVSTWSTLIGGLAFHGFAEESIAM-FREMQR 363 (498)
Q Consensus 306 ~~~~l~~~~~~~------------~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~m~~ 363 (498)
....|+...+.. |..++..+++..-. ...+.-|..|-.-+..+|++..|..+ |+.+.+
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 445555555543 44556666664321 12233466666667778888765554 555544
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.62 E-value=0.79 Score=46.04 Aligned_cols=63 Identities=11% Similarity=-0.019 Sum_probs=51.6
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC---------CHHHHHHHHHHhH
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG---------KVEEGKKYFKLMR 397 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~ 397 (498)
+...=|..|.....+.+++++|.+.|+..+. .+-+...+..|++.|.+.+ +.+....+.-++.
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~ 682 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI 682 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence 3556799999999999999999999999998 4678899999999998877 6666665555544
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.38 E-value=9 Score=33.82 Aligned_cols=183 Identities=11% Similarity=0.097 Sum_probs=109.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH--
Q 041942 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM-- 255 (498)
Q Consensus 178 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-- 255 (498)
+......|++-+|.+.+ .++..=|.+.+++++|.+++.. -...+.+.|+...|-++
T Consensus 20 l~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHH
Confidence 34456677887777764 4567778888888888887643 34455566776665554
Q ss_pred --HHHHHhCCCCCCHHHHHHHHHHHhccCCch-----HHHHHHHHHHHhhc--CCcchhhHHHHHHHHHhcCCHHHHHHH
Q 041942 256 --FEEMRSVGERPDDVTMLSLLTACADLGDLE-----VGKKVHCTLLDMTS--GVAKVLHGNALIDMYAKCGSIERAIEV 326 (498)
Q Consensus 256 --~~~m~~~g~~p~~~~~~~li~~~~~~~~~~-----~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (498)
++-..+.+++++......++..+......+ -..+.. .+..+.+ ..-++.....+...|.+.|++.+|...
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai-~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMN-NWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHH-HHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHH-HHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 555567788889888888888776543222 122222 2222222 223567778889999999999999988
Q ss_pred HhcCCCCChhHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 327 FLGMRDRDVSTWSTLIGGLAFH---GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|-.-...+...+..++--+... |...++--+ ..-.+--|.-.|+...|..+++...+
T Consensus 157 ~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf---------------~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 157 FMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF---------------FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH---------------HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHH---------------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7632222344444444333322 222221111 11122344566889999988887765
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.12 E-value=9.8 Score=33.86 Aligned_cols=128 Identities=9% Similarity=-0.006 Sum_probs=64.6
Q ss_pred hhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHH----HHHHhCCCCCCHhhHHHHHHHhhcccchh
Q 041942 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLY----TQMEKCSIKPNKFTFSFVLKACTRLLYRN 122 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 122 (498)
-|.+ .+++++|.+++-. -...+.+.|+...|-++- +-+.+.++++|......++..+.....-+
T Consensus 44 Ry~~-~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~ 111 (336)
T 3lpz_A 44 RYSK-QGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGE 111 (336)
T ss_dssp HHHH-TTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTC
T ss_pred HHHh-hcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCC
Confidence 3444 6666666665422 223345556665554443 44455667777777766766665443211
Q ss_pred -hHHHHHHHH----HHhC--CCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCC
Q 041942 123 -MGFCVHGKI----VKYG--FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186 (498)
Q Consensus 123 -~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (498)
.-..+++.+ .+.| ..-++.....+...|.+.+++.+|+..|=-...+++..+..++.-+...+.
T Consensus 112 p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 112 PVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 112222222 2223 233555666666666666666666666532222233455555444444433
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.05 E-value=10 Score=34.79 Aligned_cols=58 Identities=10% Similarity=-0.020 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPT-----EITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
.++..|...|++.+|.+++.++.+.=-+.| ...+..-++.|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345555555555555555555543100111 1122333344455555555555554443
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.24 E-value=15 Score=34.58 Aligned_cols=91 Identities=10% Similarity=0.123 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC----C-----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCC--HHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD----R-----DVSTWSTLIGGLAFHGFAEESIAMFREMQR----LKVRPT--EIT 372 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~--~~~ 372 (498)
..|...|...|++.+|.+++..+.. . -+..+...++.|...+++.+|..+++++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4577888888888888888877641 1 134667777888888899888888887642 221222 234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+...+..+...+++.+|.+.|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45556677778888888888777755
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.88 E-value=1.7 Score=34.05 Aligned_cols=121 Identities=8% Similarity=-0.020 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPT-------EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 407 (498)
..+-.-+..+...|.++.|+-+...+.... -.|+ ..++..+..++...|++.+|...|++..+....-+...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344455777888999999998887765421 2233 13566677889999999999999999765222211100
Q ss_pred -HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 408 -HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 408 -~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+...+. ......-.. .+.+.+....++.+|.+.|++++|+.+++.+..
T Consensus 101 s~~~~~~~----~ss~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 101 KVRPSTGN----SASTPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp --------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred Cccccccc----cCCCccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0000000 000000001 122345677899999999999999999988643
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.07 E-value=19 Score=37.14 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=21.2
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHhccCCchHHHHHH
Q 041942 243 YVLCGMNKQALEMFEEMRSVGERPDDVTML---SLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~---~li~~~~~~~~~~~a~~~~ 291 (498)
+...|+.+.+..+++.+.... .|. .-|. ++.-+|+..|+.....+++
T Consensus 534 ll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL 583 (963)
T 4ady_A 534 LINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLL 583 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 334555555555555555421 111 1111 2233455555555555555
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.71 E-value=6.4 Score=27.57 Aligned_cols=86 Identities=10% Similarity=-0.057 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 041942 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME 97 (498)
Q Consensus 18 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 97 (498)
.+.|..+-+.+...+- -..++...+.+ +.. .|++++|..+.+....||...|-.|-. .+.|-.+++..-+..+.
T Consensus 22 HqEA~tIAdwL~~~~~-~E~v~lIR~sS--LmN-rG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ-DEAARLIRISS--LAN-QGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHH--HHH-TTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHH--HHc-chhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 4678888888888776 55555555554 444 799999999999999999999877655 46777888887777887
Q ss_pred hCCCCCCHhhHHH
Q 041942 98 KCSIKPNKFTFSF 110 (498)
Q Consensus 98 ~~~~~p~~~~~~~ 110 (498)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
No 256
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.30 E-value=33 Score=35.44 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=25.8
Q ss_pred HHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 041942 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98 (498)
Q Consensus 58 A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 98 (498)
+.++|..+..| -|..+++...+.++.+.+.++|+.+.+
T Consensus 221 l~~Iy~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 221 SFDFLMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555554333 356667777778888888888888764
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.25 E-value=6.5 Score=33.60 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=62.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH-hhCChHHHHHHH
Q 041942 344 GLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-VHGDVELGRLAN 422 (498)
Q Consensus 344 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-~~g~~~~a~~~~ 422 (498)
...+.|+.++|++.+..-++.. +-|...-..|++.++-.|++++|.+-++.+.+ +.|+...-. ...+.-.|+..-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHHHH
Confidence 3456677777777777766642 22455555566777777777777777777766 455522111 112222333333
Q ss_pred HHHHcc--C---CCCCc-hHHHHHHHHHh--CCCchHHHHHHHHhhhC
Q 041942 423 KRLLNM--R---KDESG-DYVLLSNIYAS--RGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 423 ~~~~~~--~---~~~~~-~~~~l~~~~~~--~g~~~~A~~~~~~m~~~ 462 (498)
..+..- . +..+. -...|+.++.. .|+.++|.++-.++.+.
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 333321 1 12222 33344444443 48888888888887654
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.25 E-value=6.8 Score=27.47 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=60.0
Q ss_pred hhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 041942 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME 97 (498)
Q Consensus 18 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 97 (498)
.+.|..+-+.+...|- -..++...+.+ +.. .|++++|+.+.+....||...|-.|-. .+.|-.+++..-+..+.
T Consensus 23 HqEA~tIAdwL~~~~~-~E~v~lIR~sS--LmN-rG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE-EEAVQLIRLSS--LMN-RGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHH--HHH-TTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHH--HHc-chhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 3677888888887776 55555555444 344 699999999999888999888877655 35677777777777777
Q ss_pred hCCCCCCHhhHHH
Q 041942 98 KCSIKPNKFTFSF 110 (498)
Q Consensus 98 ~~~~~p~~~~~~~ 110 (498)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 766 555444443
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.13 E-value=7.1 Score=27.53 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 85 NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 85 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
+.-+..+-++.+....+.|++......+++|-|.+++..|.++++-++..- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 334555666666666667777777777777777777777777777665432 22334455444
No 260
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=85.67 E-value=3.4 Score=30.75 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 370 (498)
.-.|.-++.+.|++++|.+.++.+.+ +.|+.
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCC
Confidence 34456677788888888888888888 56753
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.33 E-value=5 Score=28.30 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
+.=+..+-++.+...++.|++......+++|.+.+++..|.++++-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34466667777777788899999999999999999999999999888774
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.14 E-value=20 Score=31.87 Aligned_cols=183 Identities=11% Similarity=0.091 Sum_probs=107.2
Q ss_pred HHHHhcCCh---HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH
Q 041942 179 AGYARRGEL---SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255 (498)
Q Consensus 179 ~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 255 (498)
......|++ -+|.+.+ .++..=|.+.+++++|.+++-. -...+.+.|+...+-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 345567777 6776654 4556668888888888887643 33445566776555444
Q ss_pred ----HHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHH-HHH---HHHHhhc--CCcchhhHHHHHHHHHhcCCHHHHHH
Q 041942 256 ----FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK-VHC---TLLDMTS--GVAKVLHGNALIDMYAKCGSIERAIE 325 (498)
Q Consensus 256 ----~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~-~~~---~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (498)
++-..+.++++|......++..+.....-+-.+. +.+ .+..+.+ ..-++.....+...|.+.+++.+|..
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3555567888888888888887766554221111 111 1222222 33456666788899999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|-.-.++.+..|..++--+...+...++ +... .-.+--|.-.++...|..+++...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88432222335554444333333321111 1112 2223345566788888887766654
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.94 E-value=8 Score=27.09 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=60.9
Q ss_pred CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
...++|..|- +.+...+. ...++ -+-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++
T Consensus 20 H~HqEA~tIA-dwL~~~~~-~E~v~-lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIA-EWLERLGQ-DEAAR-LIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHH-HHHHHTTC-HHHHH-HHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHhCCc-HHHHH-HHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456777776 55555543 22222 223445678899999999999999999999987765 4678888888888888
Q ss_pred HHCCCCCCHHHHHH
Q 041942 362 QRLKVRPTEITFVG 375 (498)
Q Consensus 362 ~~~~~~p~~~~~~~ 375 (498)
..+| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 8776 465555543
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.44 E-value=27 Score=37.43 Aligned_cols=148 Identities=9% Similarity=0.002 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhC----C----------------
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV----G---------------- 263 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g---------------- 263 (498)
....++..+.+.+..+-+.++...... +...-..+..+|...|++++|...|.+.... .
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 344567778888999888887665544 5555567788999999999999999764210 0
Q ss_pred --CCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc---hhhHHHHHHHHHhcCCHHHHHHHHhcCCCC--Chh
Q 041942 264 --ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK---VLHGNALIDMYAKCGSIERAIEVFLGMRDR--DVS 336 (498)
Q Consensus 264 --~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~ 336 (498)
...-..-|..++..+.+.+.++.+.++-+..+...+...+ ...|..+.+.+...|++++|...+-.+..+ -..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~ 972 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS 972 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence 0112346788888999999999999887555544332221 236788899999999999999999766532 234
Q ss_pred HHHHHHHHHHhCCCHH
Q 041942 337 TWSTLIGGLAFHGFAE 352 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~ 352 (498)
....|+..++..|..+
T Consensus 973 cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhCCChh
Confidence 6666777777666543
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.24 E-value=8.7 Score=26.95 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=59.3
Q ss_pred CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
...++|..|- +.+...+. ...++ -+-+..+...|++++|..+.+...-||...|-+|-.. +.|-.+++...+.++
T Consensus 21 H~HqEA~tIA-dwL~~~~~-~E~v~-lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIA-EWLHLKGE-EEAVQ-LIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHH-HHHHHTTC-HHHHH-HHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHhCCc-HHHHH-HHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456777776 55554443 22222 2234456778999999999999999999988877654 567778888888788
Q ss_pred HHCCCCCCHHHHHH
Q 041942 362 QRLKVRPTEITFVG 375 (498)
Q Consensus 362 ~~~~~~p~~~~~~~ 375 (498)
..+| .|....|..
T Consensus 96 a~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 96 ARSQ-DPRIQTFVN 108 (116)
T ss_dssp TTCC-CHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7766 455555543
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.03 E-value=12 Score=28.40 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHHHHHHHHHHccCCCCCc
Q 041942 367 RPTEITFVGVLVACSHAGK---VEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 367 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
.|+..+--.+..++.+..+ ..+++.+++.+.+. .|+ +..|.+.|++++|+++.+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 4666665566666666654 34566677776652 342 33333888888888888888888888754
Q ss_pred h
Q 041942 435 D 435 (498)
Q Consensus 435 ~ 435 (498)
+
T Consensus 113 A 113 (144)
T 1y8m_A 113 V 113 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.13 E-value=7.3 Score=29.15 Aligned_cols=65 Identities=9% Similarity=0.018 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHHHHHHHHHHccCCCCCc
Q 041942 367 RPTEITFVGVLVACSHAGK---VEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 367 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
.|+..+--.+..++.+..+ ..+++.+++.+.+. .|. +..+.+.|++++|+++.+.+++..|++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4555554455555555543 33456666665552 232 22222666677777777777767776643
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.22 E-value=18 Score=29.14 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 041942 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEM 218 (498)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 218 (498)
+..+....+..+...|..+....+.+.+..++...-...+.++.+.+..+..-.+.+.+..++..+-...+.++.+.++.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 33333333444444444333333333333444444444555555555554444444444456666666666677777766
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 041942 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284 (498)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 284 (498)
+....+...+..++...-...+.++...+..+ +...+..+.. .++..+-...+.++...|..
T Consensus 107 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 107 RAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 55555555566666666666666666666543 3334444432 34555555666666666553
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.40 E-value=43 Score=32.91 Aligned_cols=265 Identities=8% Similarity=-0.046 Sum_probs=125.0
Q ss_pred hHHHHHHHHHhcCCcChHHH-HHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 041942 21 LKQIQALVTINGFNSDSSAL-RELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC 99 (498)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 99 (498)
..++...+.++.-.|-.... +.-+. .+.+ .+++......+.. ++.+...-.....+....|+..+|......+-..
T Consensus 55 ~~ev~~Fl~~~~~~p~~~~Lr~~~l~-~l~~-~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 55 AVTVTNFVRANPTLPPARTLQSRFVN-ELAR-REDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH-HHHH-TTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHH-HHHh-CCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 34566666665333332222 33344 5666 7788888887766 4334444445666677778877777777777665
Q ss_pred CCCCCHhhHHHHHHHhhcccchhh--HHHHHHHHHHhC-----------CCCChH-HHHHHHHHHHhcCChhHHHHhhcc
Q 041942 100 SIKPNKFTFSFVLKACTRLLYRNM--GFCVHGKIVKYG-----------FEFNRF-VRNSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 100 ~~~p~~~~~~~li~~~~~~~~~~~--a~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
| ......+..++..+.+.|.+.. .++=+..+...| ++++.. ....++..+.. ...+......
T Consensus 132 ~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~ 207 (618)
T 1qsa_A 132 G-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART 207 (618)
T ss_dssp S-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH
T ss_pred C-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhc
Confidence 5 3445556666666665554332 222222222222 111111 11122222111 1122222111
Q ss_pred CCCCCcc---hHHHHHHHHHhcCChHHHHHHHhcCC---CCCcc----hHHHHHHHHHhcCChHHHHHHHhhCC--CCCh
Q 041942 166 DAKMDVV---AWSSLTAGYARRGELSMARSLFDEMP---VRDLV----SWNVMITGYAKQGEMEKANELFNEVP--KRDV 233 (498)
Q Consensus 166 ~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~ 233 (498)
. .++.. .+...+.-+.+ .+.+.|..++.... ..+.. .+..+.......+...++...+.... ..+.
T Consensus 208 ~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (618)
T 1qsa_A 208 T-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST 285 (618)
T ss_dssp S-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH
T ss_pred c-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh
Confidence 1 11111 11111222223 36677777776553 12222 12222222233342444444444422 1222
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 295 (498)
....-.+....+.|+++.|...|..|..... ......--+..++...|+.++|..+|....
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2233333444566888888888877764321 123323344556667788888888885544
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.77 E-value=11 Score=28.63 Aligned_cols=51 Identities=12% Similarity=0.244 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 352 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
.+++.+++++.+.+..-.....-.|.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---~eP~ 109 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERN 109 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---TCCC
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCCC
Confidence 45555666655532111223333444566666666666666666655 4554
No 271
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.18 E-value=7.2 Score=29.18 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 352 EESIAMFREMQRLKVRP--TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 352 ~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
.+++.++++..+.+ | ....+-.|.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 60 ~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~ 110 (134)
T 3o48_A 60 RLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERN 110 (134)
T ss_dssp HHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTT
T ss_pred HHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCC
Confidence 45566666655533 3 133344445566666666666666666655 5554
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.96 E-value=16 Score=29.65 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 349 GFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 349 ~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+...++..+|..|...|+--. ..-|......+...|++.+|.++++..++
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 335566666666666555443 44455555556666666666666666555
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.65 E-value=13 Score=27.81 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHH
Q 041942 85 NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIY 148 (498)
Q Consensus 85 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 148 (498)
|.-+..+-++.+....+.|++......+++|-+.+|+..|.++++-++..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 333566667777777788888888888888888888888888888877642 334555665553
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.53 E-value=43 Score=31.16 Aligned_cols=33 Identities=0% Similarity=-0.112 Sum_probs=24.3
Q ss_pred CCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
|=.......|+..+.- ..++++..+-+|...|-
T Consensus 344 ~Ys~I~l~~mA~~l~~--s~~~~E~~L~~lI~~g~ 376 (429)
T 4b4t_R 344 SYKTLSLKSMASAFGV--SVAFLDNDLGKFIPNKQ 376 (429)
T ss_dssp TCSEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HhceeeHHHHHHHhCc--CHHHHHHHHHHHHHcCC
Confidence 5556678888888743 46788888888887765
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.47 E-value=9.7 Score=35.59 Aligned_cols=95 Identities=11% Similarity=-0.073 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCC------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCCCCHHHH--
Q 041942 305 LHGNALIDMYAKCGSIERAIEVFLGMRD------RDVSTWSTLIGGLAFHGFAEESIAMFREMQR---LKVRPTEITF-- 373 (498)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~-- 373 (498)
.....+...|.+.|++++|.+.|.++.. .-...+-..++.+...+++..+...+.++.. .+-.|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556788888999999999998887763 2345777788888888999999888888754 2323332211
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 374 VGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
..-...+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122345668888888888877763
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.62 E-value=4.5 Score=34.60 Aligned_cols=48 Identities=6% Similarity=0.091 Sum_probs=22.1
Q ss_pred hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
.|+++++......-++.+|.|...-..|+..++-.|+|++|.+-++..
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 277
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.53 E-value=30 Score=25.97 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
+.=+..+-++.+...++.|++......+++|.+.+++..|.++|+-++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34456666777777888999999999999999999999999999988874
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.91 E-value=41 Score=27.30 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 041942 317 CGSIERAIEVFLGMRD-----RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 368 (498)
++...++.++|..|.. .-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446677777776653 345567777788888888888888888888877777
No 279
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=70.30 E-value=51 Score=28.17 Aligned_cols=122 Identities=10% Similarity=0.010 Sum_probs=55.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcC--ChHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 041942 168 KMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQG--EMEKANELFNEVPKRDVVSWNAMISGYVL 245 (498)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 245 (498)
.++...-...+.++...|+.+..-.+...+..++..+-...+.+....+ ..+....+...+..++..+-...+.++.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3444444444555555554332222222233445444444455555544 33333334444455666666666667777
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 041942 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 296 (498)
.|+..-...+...+. . ++ .-...+.++.+.|.. .+...+.+.+.
T Consensus 219 ~~~~~~~~~L~~~l~-d---~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 219 RKDKRVLSVLCDELK-K---NT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp TTCGGGHHHHHHHHT-S---SS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred hCCHhhHHHHHHHhc-C---cc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 775443333333332 2 22 223345555555653 44444434443
No 280
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=70.29 E-value=51 Score=28.17 Aligned_cols=120 Identities=11% Similarity=0.000 Sum_probs=60.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041942 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG-MNKQALEMFEEMRSVGERPDDVTMLSLLTA 277 (498)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 277 (498)
.++..+-...+.++...++.+....+...+..++...-...+.++...| ....+...+..+.. .++..+-...+.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~a 215 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIG 215 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 5555555556666666665443334444445566655555555555544 23445555554443 3556666666777
Q ss_pred HhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhc
Q 041942 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329 (498)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (498)
+...|+......+. ..+.. ++ +....+.++.+.|.. .+...+..
T Consensus 216 L~~~~~~~~~~~L~-~~l~d----~~--vr~~a~~aL~~i~~~-~~~~~L~~ 259 (280)
T 1oyz_A 216 LSYRKDKRVLSVLC-DELKK----NT--VYDDIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_dssp HHHTTCGGGHHHHH-HHHTS----SS--CCHHHHHHHHHHCCG-GGHHHHHH
T ss_pred HHHhCCHhhHHHHH-HHhcC----cc--HHHHHHHHHHhcCch-hhhHHHHH
Confidence 77777554444444 44433 22 223445566666663 34444433
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.29 E-value=35 Score=26.27 Aligned_cols=45 Identities=4% Similarity=0.016 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 354 SIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 354 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+.++|..|...|+--. ..-|......+...|++.+|.++++..++
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556666666555443 34444555555555666666666665555
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.80 E-value=43 Score=26.17 Aligned_cols=45 Identities=4% Similarity=0.093 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 354 SIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 354 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+.++|..|...|+--. ..-|......+...|++.+|.++++..++
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556666666665544 44455555566666666666666666666
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.75 E-value=54 Score=27.75 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=8.6
Q ss_pred HHHhcCChHHHHHHHhh
Q 041942 211 GYAKQGEMEKANELFNE 227 (498)
Q Consensus 211 ~~~~~~~~~~A~~~~~~ 227 (498)
..+..|+.+-+..+++.
T Consensus 154 ~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 33445555555555543
No 284
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=64.12 E-value=45 Score=25.65 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRDRD---VSTWSTLIGGLAFHGF--AEESIAMFREMQRLKVRPTEIT 372 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~ 372 (498)
..++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 567888888899999999998887662 2344445555555332 4567778888887776554443
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.99 E-value=25 Score=30.37 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=14.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 255 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
+.+.+.+.|..++.... .-...|+.+-+.-++
T Consensus 210 ~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll 241 (285)
T 3kea_A 210 MLQALFKYDINIYSANL-----ENVLLDDAEIAKMII 241 (285)
T ss_dssp HHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHH
Confidence 44445555655554432 113345555444444
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=61.07 E-value=48 Score=24.61 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRDRD---VSTWSTLIGGLAFHGF--AEESIAMFREMQRLKVRPTEIT 372 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~ 372 (498)
..++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 567888888899999999999887662 2334445555555432 4567788888887776554443
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=60.06 E-value=28 Score=28.80 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=23.0
Q ss_pred hhchhhhHHHHHHHHHhcCCcChH---HHHHHHHhhhhccCCChHHHHHhcccCC
Q 041942 15 CTNLRTLKQIQALVTINGFNSDSS---ALRELIYSGSVVIPGAINYAHKMFVKIT 66 (498)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~A~~~~~~~~ 66 (498)
.|+.+..+.+.+.+.+.|..++.. -.+. +. ..+. .|+.+-+..+++...
T Consensus 19 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~-~A~~-~~~~~~v~~Ll~~g~ 70 (241)
T 1k1a_A 19 QGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LH-LAVI-TTLPSVVRLLVTAGA 70 (241)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HH-HHHH-TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HH-HHHH-cCCHHHHHHHHHcCC
Confidence 355555555655555555443322 1122 22 2333 566665555555443
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.03 E-value=78 Score=25.81 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=6.8
Q ss_pred CCChHHHHHhcccC
Q 041942 52 PGAINYAHKMFVKI 65 (498)
Q Consensus 52 ~~~~~~A~~~~~~~ 65 (498)
.|+++....+++..
T Consensus 19 ~g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 19 YGIYERCRELVEAG 32 (240)
T ss_dssp TTCHHHHHHHHHTT
T ss_pred cCChHHHHHHHHcC
Confidence 45555555554443
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.68 E-value=57 Score=27.29 Aligned_cols=86 Identities=12% Similarity=-0.058 Sum_probs=46.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhC--CCCC----CHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHH
Q 041942 75 TIIRGSAQSQNPLDAVFLYTQMEKC--SIKP----NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIY 148 (498)
Q Consensus 75 ~ll~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 148 (498)
--++.+....++++|++++++..+. ++++ ........+..-.....-..+..+.+.+.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3466778888888888888876441 2222 112222233333333333344444444422 344555566667
Q ss_pred HHHhcCChhHHHHhh
Q 041942 149 FHANCGDLNTASVLF 163 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~ 163 (498)
.+.+.|+-++|.++|
T Consensus 100 ~L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 100 NMIKLGLPEQALDLF 114 (235)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHCCChhHHHHHH
Confidence 777777777777766
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.15 E-value=78 Score=24.30 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHHhcCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 041942 323 AIEVFLGMRD-----RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368 (498)
Q Consensus 323 A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 368 (498)
+.++|..|.. .-...|..-...+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455544443 234456666666777777777777777777766666
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.25 E-value=1.1e+02 Score=24.93 Aligned_cols=25 Identities=8% Similarity=-0.134 Sum_probs=13.5
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCC
Q 041942 79 GSAQSQNPLDAVFLYTQMEKCSIKP 103 (498)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~~~~p 103 (498)
..++.|+.+....+++.+.+.|..+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3445566666666665555544433
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.19 E-value=1.1e+02 Score=23.89 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=29.3
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 370 (498)
.-...|..-...+...|++.+|.++|+.-++.+-.|-.
T Consensus 94 ~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 34566777777888888888888888888887777743
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.06 E-value=1.1e+02 Score=25.23 Aligned_cols=47 Identities=9% Similarity=0.197 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 352 EESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 352 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+.+..+|..|...|+--. ..-|......+...|++.+|.++|+..++
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455567777777666544 44555555666666777777777766666
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.48 E-value=97 Score=29.48 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHhhccC
Q 041942 140 RFVRNSLIYFHANCGDLNTASVLFDGD 166 (498)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (498)
..++|.+++.|...+.++.|..+..+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 345555566666666666666655543
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.35 E-value=1.3e+02 Score=24.46 Aligned_cols=14 Identities=7% Similarity=-0.163 Sum_probs=6.1
Q ss_pred hhcCCHHHHHHHHH
Q 041942 381 SHAGKVEEGKKYFK 394 (498)
Q Consensus 381 ~~~g~~~~a~~~~~ 394 (498)
.+.|+.+-+.-+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 34444444444443
No 296
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=44.02 E-value=1.2e+02 Score=23.96 Aligned_cols=147 Identities=14% Similarity=0.033 Sum_probs=74.7
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC---------------C-C-HHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR---------------P-T-EITFVGVLV 378 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~---------------p-~-~~~~~~l~~ 378 (498)
-.|.+..++-++.....-...-|.. -+|-+.+++..|+..++..+...+. | | ..-++.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 4566666666665543222222222 2455667777777777777644332 1 1 234555556
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH------------------hhCC----hHHHH--------HHHHHHHcc
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------VHGD----VELGR--------LANKRLLNM 428 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~------------------~~g~----~~~a~--------~~~~~~~~~ 428 (498)
.|.+.|+.++|+..+..--....+-|.++... +.|- +.... +..++..+-
T Consensus 123 lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~ 202 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEH 202 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTS
T ss_pred HHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHh
Confidence 77777777777777755432111111111100 1110 00000 222222232
Q ss_pred CCCCCc-hHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 429 RKDESG-DYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 429 ~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
-|.-.. .....+..|...|..++...+|..+++++.
T Consensus 203 iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 203 VPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp TTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred CCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 333211 233456678889999999999999887654
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.43 E-value=51 Score=24.49 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=13.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHH
Q 041942 74 NTIIRGSAQSQNPLDAVFLYTQM 96 (498)
Q Consensus 74 ~~ll~~~~~~g~~~~A~~~~~~m 96 (498)
+.++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34555555556666666665555
No 298
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=42.51 E-value=1.3e+02 Score=27.52 Aligned_cols=293 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHhhHH--HHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCC
Q 041942 90 VFLYTQMEKCSIKPNKFTFS--FVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167 (498)
Q Consensus 90 ~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 167 (498)
.++++.+.+.|..|+..... +.+...+..|+.+-+..+++. ...+......-...+...+..|+.+-+.-+++...
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 104 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCC
Q ss_pred CCCcchHH--HHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHH
Q 041942 168 KMDVVAWS--SLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMI 240 (498)
Q Consensus 168 ~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~ 240 (498)
.++..... +.+...++.|+.+.+..+++.-. ......-.+.+...+..|+.+-+..+++.-.. .+..-.+.+.
T Consensus 105 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 184 (437)
T 1n11_A 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH 184 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHH
T ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC
Q 041942 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTM--LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318 (498)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (498)
.+..... .++++.+.+.|..++.... .+.+...+..|+.+-+..+++.-........+..+ .+...+..|
T Consensus 185 ~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t---~L~~A~~~g 256 (437)
T 1n11_A 185 VAVHHNN-----LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT---PLHLAAQEG 256 (437)
T ss_dssp HHHHTTC-----HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC---HHHHHHHTT
T ss_pred HHHHcCC-----HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC---HHHHHHHCC
Q ss_pred CHHHHHHHHhcCCCCChhHHH--HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 041942 319 SIERAIEVFLGMRDRDVSTWS--TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK 394 (498)
Q Consensus 319 ~~~~A~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (498)
+.+-+.-+++.-..++..... +.+...+..|+.+-+..+++.-.. +......-.+.+...+..|+.+-+.-+++
T Consensus 257 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 332 (437)
T 1n11_A 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM--VDATTRMGYTPLHVASHYGNIKLVKFLLQ 332 (437)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC--TTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc--CCCCCCCCCCHHHHHHHcCcHHHHHHHHh
No 299
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.10 E-value=75 Score=20.95 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=44.3
Q ss_pred HHHHhCCCCCCHhhHHHHHHHhhccc-chhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChh
Q 041942 94 TQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN 157 (498)
Q Consensus 94 ~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (498)
+.|.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+.
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 446677877776554 4456666554 66778899999988776677777777777777777543
No 300
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.72 E-value=71 Score=24.19 Aligned_cols=40 Identities=10% Similarity=0.020 Sum_probs=16.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 041942 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279 (498)
Q Consensus 240 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 279 (498)
+..+...+..-.|.++++.+.+.+...+..|....+..+.
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 67 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR 67 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH
Confidence 3333333333444444444444433334444333333333
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.69 E-value=1.5e+02 Score=28.28 Aligned_cols=58 Identities=12% Similarity=-0.148 Sum_probs=27.8
Q ss_pred hHHHHHHHhhcccchhhHHHHHHHHHHhCC-CCCh--HHH-HHHHHHHHhcCChhHHHHhhc
Q 041942 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGF-EFNR--FVR-NSLIYFHANCGDLNTASVLFD 164 (498)
Q Consensus 107 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~ 164 (498)
.++.+++.|...+.++.|..+..+..---. .++. ..| -.+...+.-.+++.+|.+.|.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 355555666666666666666655531000 0011 111 223445555666666665554
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.27 E-value=3.3e+02 Score=28.42 Aligned_cols=27 Identities=4% Similarity=-0.013 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
-|..++..+.+.+.++.+.++-+..+.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 445555555555555555555555554
No 303
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=40.20 E-value=1.2e+02 Score=23.05 Aligned_cols=64 Identities=11% Similarity=-0.080 Sum_probs=45.0
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChh
Q 041942 93 YTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN 157 (498)
Q Consensus 93 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (498)
-+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3456778877665443 445556666678889999999998887778777777788888887654
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.22 E-value=65 Score=24.76 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=12.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHH
Q 041942 74 NTIIRGSAQSQNPLDAVFLYTQM 96 (498)
Q Consensus 74 ~~ll~~~~~~g~~~~A~~~~~~m 96 (498)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34455555555555555555555
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.10 E-value=3.4e+02 Score=28.37 Aligned_cols=48 Identities=6% Similarity=-0.064 Sum_probs=29.1
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc----hhhHHHHHHHHHhcC
Q 041942 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGNALIDMYAKCG 318 (498)
Q Consensus 270 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~ 318 (498)
-|..++..+-+.+.++.+..+-+-.+.... ..| ...+..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 677778888888888888777644443222 122 235566666665544
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.09 E-value=1.7e+02 Score=24.14 Aligned_cols=33 Identities=12% Similarity=0.311 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 368 (498)
..|......+...|++.+|.++|+.-++.+-.|
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344444444445555555555555544444444
No 307
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.49 E-value=1.1e+02 Score=26.24 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=7.2
Q ss_pred HHHhcCChHHHHHHHhh
Q 041942 211 GYAKQGEMEKANELFNE 227 (498)
Q Consensus 211 ~~~~~~~~~~A~~~~~~ 227 (498)
..+..|+.+-+..+++.
T Consensus 135 ~A~~~~~~~~v~~Ll~~ 151 (285)
T 3kea_A 135 HAVMLNDVSIVSYFLSE 151 (285)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 33444444444444433
No 308
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.68 E-value=1.7e+02 Score=23.67 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHHH---hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 041942 236 WNAMISGYV---LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283 (498)
Q Consensus 236 ~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 283 (498)
+.-+|+++. +..+++.|+-.+-+|++.| .|.-..-..++.+.-..|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 334555554 4589999999999999999 6666555566666655553
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.86 E-value=93 Score=23.51 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
-..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33445555555556667777777776655555566555555555555
No 310
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.79 E-value=1.1e+02 Score=23.21 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=43.2
Q ss_pred HHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChh
Q 041942 94 TQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN 157 (498)
Q Consensus 94 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (498)
+.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 456677877766543 3344455555 7789999999988877777777777777888777543
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.52 E-value=1e+02 Score=23.48 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=15.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041942 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278 (498)
Q Consensus 240 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 278 (498)
+..+...+..-.|.++++.+.+.+...+..|....+..+
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 71 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFL 71 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 333333333344444444444433333333333333333
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.37 E-value=28 Score=29.39 Aligned_cols=56 Identities=7% Similarity=-0.174 Sum_probs=31.1
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHhh-------HHHHHHHhh--cccchhhHHHHHHHHH
Q 041942 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFT-------FSFVLKACT--RLLYRNMGFCVHGKIV 132 (498)
Q Consensus 77 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------~~~li~~~~--~~~~~~~a~~~~~~~~ 132 (498)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3344567788777777777766665555332 233333322 4566665555554443
No 313
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.77 E-value=1.4e+02 Score=23.06 Aligned_cols=71 Identities=7% Similarity=-0.070 Sum_probs=50.3
Q ss_pred hHHHHHHHHH-HHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHh--CCCCChHHHHHHHHHHHhcCChh
Q 041942 86 PLDAVFLYTQ-MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY--GFEFNRFVRNSLIYFHANCGDLN 157 (498)
Q Consensus 86 ~~~A~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 157 (498)
.+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445554444 466788876543 45567777777888999999999988 76777777777778888887643
No 314
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=33.92 E-value=2.1e+02 Score=24.03 Aligned_cols=54 Identities=9% Similarity=-0.052 Sum_probs=37.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCCchHHHHHH
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA-DLGDLEVGKKVH 291 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~~~~a~~~~ 291 (498)
.++...-+.++++++....+.+.+.+...+..--+.|-.+|- ..|....+++++
T Consensus 9 ~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRii 63 (248)
T 3uzd_A 9 QKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVI 63 (248)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHH
Confidence 355666788999999999999988887777766555555552 234445666666
No 315
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=33.58 E-value=65 Score=21.28 Aligned_cols=38 Identities=8% Similarity=0.131 Sum_probs=24.8
Q ss_pred HHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 041942 59 HKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLYTQM 96 (498)
Q Consensus 59 ~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 96 (498)
.+++.+++ +|++.||+-+...+-+..-..+++.+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35566666 777888887777665555555666666554
No 316
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.53 E-value=1.5e+02 Score=22.95 Aligned_cols=52 Identities=4% Similarity=-0.182 Sum_probs=38.9
Q ss_pred ccCChHHHHHHHHHHHhCCCCC--CHhhHHHHHH-Hh-----hcccchhhHHHHHHHHHH
Q 041942 82 QSQNPLDAVFLYTQMEKCSIKP--NKFTFSFVLK-AC-----TRLLYRNMGFCVHGKIVK 133 (498)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~-~~-----~~~~~~~~a~~~~~~~~~ 133 (498)
..|++-+|-++|+..-...-.+ ....|..||. .. .+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4599999999999997665455 5566777777 32 356888889888888866
No 317
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.28 E-value=1.8e+02 Score=23.48 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=8.8
Q ss_pred HHHhcCChHHHHHHHhh
Q 041942 211 GYAKQGEMEKANELFNE 227 (498)
Q Consensus 211 ~~~~~~~~~~A~~~~~~ 227 (498)
..+..|+.+-+..+++.
T Consensus 145 ~A~~~~~~~~v~~Ll~~ 161 (231)
T 3aji_A 145 RAAAKGNLKMVHILLFY 161 (231)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33455566555555543
No 318
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.26 E-value=1.1e+02 Score=25.45 Aligned_cols=22 Identities=14% Similarity=-0.029 Sum_probs=14.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 041942 239 MISGYVLCGMNKQALEMFEEMR 260 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~ 260 (498)
-+..+....++++|..++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666677777777666554
No 319
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.25 E-value=1.8e+02 Score=23.46 Aligned_cols=45 Identities=24% Similarity=0.256 Sum_probs=32.2
Q ss_pred HHHHHHH---hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 041942 238 AMISGYV---LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282 (498)
Q Consensus 238 ~l~~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 282 (498)
-+|+++. +..+++.|+-.+-+|++.|..|.-..-..++.+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3555554 45889999999999999997776666666665555444
No 320
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=32.81 E-value=2.3e+02 Score=24.05 Aligned_cols=159 Identities=10% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh-
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC-ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK- 316 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 316 (498)
++...-+.+++++....++++.+.+...+..=-+.|-.+| -..|....+++++ ..+++............++..|.+
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRii-ssieqkee~~g~~~~~~~i~~yr~k 115 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRII-SSIEQKEENKGGEDKLKMIREYRQM 115 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHH-hHHHHhhhccccHHHHHHHHHHHHH
Q ss_pred -----cCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHH---CCCCCCHH
Q 041942 317 -----CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA-----------------EESIAMFREMQR---LKVRPTEI 371 (498)
Q Consensus 317 -----~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~A~~~~~~m~~---~~~~p~~~ 371 (498)
..--.+.+.+++...-|+..+-..-+-.+-..|++ +.|.+.|+++.+ ..++|...
T Consensus 116 Ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThP 195 (261)
T 3ubw_A 116 VETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHP 195 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q ss_pred HHHHHH-----HHHhhcCCHHHHHHHHHHhHH
Q 041942 372 TFVGVL-----VACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 372 ~~~~l~-----~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+...|+ -.|--.+++++|.++-+....
T Consensus 196 irLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 196 IRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 321
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=32.78 E-value=2.8e+02 Score=25.00 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRDR 333 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~ 333 (498)
.++.-|...|+.++|...++++..|
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 3444455555555555555554444
No 322
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.73 E-value=2.5e+02 Score=24.68 Aligned_cols=122 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc---CCHHHHH
Q 041942 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA---GKVEEGK 390 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~ 390 (498)
+...|++++|...|+. ..+...+.......+.+++.+++....+ .+...-+..-.+. .+..+..
T Consensus 124 ~~t~gKf~eAl~~Fr~------iL~~i~l~~v~~~~e~~e~~eli~icrE-------Yilal~iEl~Rr~l~~~~~kR~l 190 (325)
T 3mv2_A 124 NFKLNKPDIAIECFRE------AIYRITLLMVDDAEDEKLAHKILETARE-------YILGLSIELERRSLKEGNTVRML 190 (325)
T ss_dssp HHHTTCHHHHHHHHHH------HHHHHHTCCBCSSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTCCTTCHHHHH
T ss_pred HHhcCCHHHHHHHHHH------HHHHhheeeeccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCcccHHHHH
Q ss_pred HHHHHhHHhcCCCCChhHHH---------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 391 KYFKLMRDEYNIEPNIRHYG---------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~y~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
++--.+.. ..+.|.-.... +.+++..|-...++++++.|+ ....++|.+++..-.+
T Consensus 191 ELAAYFT~-c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~--------------~~~a~qArkil~~ce~ 255 (325)
T 3mv2_A 191 ELAAYFTK-AKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS--------------GPRAEQARKIKNKADS 255 (325)
T ss_dssp HHHHHGGG-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS--------------SHHHHHHHHHHHHHHT
T ss_pred HHHHHhcc-CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHHhc
Q ss_pred CC
Q 041942 462 SD 463 (498)
Q Consensus 462 ~~ 463 (498)
.+
T Consensus 256 ~~ 257 (325)
T 3mv2_A 256 MA 257 (325)
T ss_dssp SC
T ss_pred CC
No 323
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.57 E-value=2e+02 Score=23.21 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=4.6
Q ss_pred CChHHHHHhcc
Q 041942 53 GAINYAHKMFV 63 (498)
Q Consensus 53 ~~~~~A~~~~~ 63 (498)
|+++....+++
T Consensus 17 g~~~~v~~ll~ 27 (231)
T 3aji_A 17 GKLDELKERIL 27 (231)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44444444443
No 324
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=32.38 E-value=58 Score=20.22 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=13.5
Q ss_pred ccCChHHHHHHHHHHHhCCCCCC
Q 041942 82 QSQNPLDAVFLYTQMEKCSIKPN 104 (498)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~~~~p~ 104 (498)
..|+++.|+..+-.|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35666666666666655544444
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.59 E-value=1.7e+02 Score=22.20 Aligned_cols=64 Identities=9% Similarity=0.046 Sum_probs=47.1
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHhhccc-chhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChh
Q 041942 93 YTQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN 157 (498)
Q Consensus 93 ~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (498)
.+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 5 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 5 NQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3456778888776554 3445555666 67889999999999887778777777788888888654
No 326
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=31.04 E-value=1.7e+02 Score=22.05 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=46.8
Q ss_pred CCChHHHHHhcccCC----CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhh---HHHHHHHhhcccchhhH
Q 041942 52 PGAINYAHKMFVKIT----EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFT---FSFVLKACTRLLYRNMG 124 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a 124 (498)
.|+.+....+++... ..+..-++. +...+..|+.+ +++.+.+.|..++... .+.| ...+..|+.+
T Consensus 18 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~-- 89 (165)
T 3twr_A 18 AGDVETVKKLCTVQSVNCRDIEGRQSTP-LHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPL-HNACSYGHYE-- 89 (165)
T ss_dssp HTCHHHHHHHCCTTTTTCCCTTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH--
T ss_pred hCCHHHHHHHHHcCCCCccccccCCCCH-HHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHH-HHHHHcCcHH--
Confidence 688888888877543 122222223 33344556643 4444555555543321 2222 2233445443
Q ss_pred HHHHHHHHHhCCCCChHHH--HHHHHHHHhcCChhHHHHhhcc
Q 041942 125 FCVHGKIVKYGFEFNRFVR--NSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
+.+.+.+.|..++.... ...+...+..|+.+-+..+++.
T Consensus 90 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 90 --VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130 (165)
T ss_dssp --HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred --HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34444455544432110 1123333445555555555544
No 327
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=30.67 E-value=1.6e+02 Score=21.91 Aligned_cols=13 Identities=8% Similarity=0.396 Sum_probs=7.1
Q ss_pred CCChHHHHHhccc
Q 041942 52 PGAINYAHKMFVK 64 (498)
Q Consensus 52 ~~~~~~A~~~~~~ 64 (498)
.|+.+.+..+++.
T Consensus 12 ~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 12 RGDVQEVRRLLHR 24 (156)
T ss_dssp HTCHHHHHHHHHT
T ss_pred hCCHHHHHHHHHh
Confidence 4555555555554
No 328
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.63 E-value=1.6e+02 Score=21.76 Aligned_cols=63 Identities=10% Similarity=0.002 Sum_probs=44.7
Q ss_pred HHHHhCCCCCCHhhHHHHHHHhhccc-chhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChh
Q 041942 94 TQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN 157 (498)
Q Consensus 94 ~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (498)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 7 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 7 SELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 346677877776544 3445555555 67889999999998887777777777778888777654
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.49 E-value=3.4e+02 Score=25.40 Aligned_cols=111 Identities=12% Similarity=0.016 Sum_probs=60.4
Q ss_pred CChHHHHHhcccCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHH
Q 041942 53 GAINYAHKMFVKITEPDT-FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131 (498)
Q Consensus 53 ~~~~~A~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 131 (498)
.+.+.|.++-.+..-|.. ..|..-.+.+...|++++|.++--.-.. |+--+..|.+.+-..=..-|+..-...+|..+
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~L 421 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGIL 421 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 344555555544443321 2244444556666777777666555443 34445555555444444445666666667766
Q ss_pred HHhCCCCChHHHHHHHHHHHhcCChhHHHHhhcc
Q 041942 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
.+.| ..+..----+++.-...|+.+-.++++.+
T Consensus 422 l~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 422 LDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 6665 44544444555555666666666666654
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.24 E-value=81 Score=24.48 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=36.0
Q ss_pred HHHHHHHH-HHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhh--cCCcchhhHHHHHHHHHhcCC
Q 041942 250 KQALEMFE-EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT--SGVAKVLHGNALIDMYAKCGS 319 (498)
Q Consensus 250 ~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 319 (498)
+.+++-+. .+.+.|++++..- ..++..+...+..-.|.+++ +.+... +...+..|.-.-++.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~-~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLY-MEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHH-HHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 33443333 3445676665543 34455555666667777777 444444 434444444445566666554
No 331
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.71 E-value=1.6e+02 Score=24.34 Aligned_cols=56 Identities=9% Similarity=-0.162 Sum_probs=31.1
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHhhcc---cchhhHHHHHHHHHH
Q 041942 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNK-------FTFSFVLKACTRL---LYRNMGFCVHGKIVK 133 (498)
Q Consensus 77 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~---~~~~~a~~~~~~~~~ 133 (498)
+...++.|+.+....+++.+.+.|..++. .-.+.|..+ +.. |+.+-+..+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCc
Confidence 44456677887777777777666654433 223333333 333 666666666654433
No 332
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.33 E-value=2.5e+02 Score=23.04 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHCCCCCC--HHHHH-----HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHH-HHHH
Q 041942 351 AEESIAMFREMQRLKVRPT--EITFV-----GVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELG-RLAN 422 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~--~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a-~~~~ 422 (498)
.+.|+.+|+.+.+.---++ ..... ..+..|.+.|.+++|.+++++... -.|+ ...- ..++
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~---~~~s---------~~kLr~kL~ 155 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS---KDPT---------TQKLRNDLL 155 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST---TCGG---------GHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc---CCCC---------chHHHHHHH
Confidence 4779999998877432122 11222 233578899999999999998855 2222 1111 2334
Q ss_pred HHHHccCCCCCc----hHH---HHHHHHHhCCCchHHHHHHHHhh
Q 041942 423 KRLLNMRKDESG----DYV---LLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 423 ~~~~~~~~~~~~----~~~---~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
..+.+.+|.++. .|. ..+..|.+.-. +++...+-+|.
T Consensus 156 ~II~~Kd~~H~~lqnFSy~~~~~ki~~fve~~~-~~a~~FLL~~A 199 (235)
T 3bu8_A 156 NIIREKNLAHPVIQNFSYETFQQKMLRFLESHL-DDAEPYLLTMA 199 (235)
T ss_dssp HHHHHTCTTSHHHHTCCHHHHHHHHHHHHHTTS-CCCCCHHHHHH
T ss_pred HHHhccCcccHHHHhccHHHHHHHHHHHHHHHh-cccchHHHHHH
Confidence 444466776542 333 44556666544 33443444443
No 333
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.61 E-value=76 Score=22.05 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=26.0
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 041942 318 GSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
...+.|.++++.+..+.+..|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35677777777777777777777777776656554443
No 334
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.53 E-value=3.4e+02 Score=24.36 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRDRD---VSTWSTLIGGLAFHGF--AEESIAMFREMQRLKVRPTEI 371 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~ 371 (498)
..++.-|...|+.++|...++++..|. ......+..++-+.++ .+...+++..+...|+-+...
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 566777777788888888887777653 2233444444444332 345666677776666544433
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.07 E-value=98 Score=22.85 Aligned_cols=47 Identities=23% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 284 (498)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45566666666778888888888777677777777777777666643
No 336
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.86 E-value=1.2e+02 Score=22.98 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLG 282 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 282 (498)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455555555555544444444444444444333
No 337
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.49 E-value=1.3e+02 Score=24.97 Aligned_cols=17 Identities=12% Similarity=-0.119 Sum_probs=9.5
Q ss_pred HHHHhcCChHHHHHHHh
Q 041942 210 TGYAKQGEMEKANELFN 226 (498)
Q Consensus 210 ~~~~~~~~~~~A~~~~~ 226 (498)
...+..|+.+-+..+++
T Consensus 145 ~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 145 SLAACTNQPHIVHYLTE 161 (260)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33445566666666655
No 338
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.55 E-value=1.9e+02 Score=21.39 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLL 275 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li 275 (498)
.-.|.++++.+.+.+...+..|...-+
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L 60 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVL 60 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 334444444444443333333333333
No 339
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=25.07 E-value=1.1e+02 Score=29.04 Aligned_cols=48 Identities=8% Similarity=-0.042 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
++.|...|.++..+.|++...|+.|+-.....|+.-+|.-.|-+....
T Consensus 168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 467888888888888988888999888888888887777666655543
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.88 E-value=1.4e+02 Score=22.26 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=34.7
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChh
Q 041942 109 SFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN 157 (498)
Q Consensus 109 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (498)
..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445666666667788888888888776777777766777777777544
No 341
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.74 E-value=3.1e+02 Score=25.68 Aligned_cols=99 Identities=8% Similarity=-0.016 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 041942 23 QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC 99 (498)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 99 (498)
-......+.|++-....|..-.. .+-. .|++++|.++-...+ -++..+.+.+-.+=...|...--+.+|..+.+.
T Consensus 347 lA~~lA~R~~LpGAd~L~~~~F~-~l~~-~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~ 424 (494)
T 1bpo_A 347 LALRMAVRNNLAGAEELFARKFN-ALFA-QGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQ 424 (494)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHH-HHHH-TTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHH-HHHH-cCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhcc
Confidence 34455566666655555555555 3444 899999999988776 456666666666556667888888888888887
Q ss_pred CCCCCHhhHHHHHHHhhcccchhhH
Q 041942 100 SIKPNKFTFSFVLKACTRLLYRNMG 124 (498)
Q Consensus 100 ~~~p~~~~~~~li~~~~~~~~~~~a 124 (498)
| ..+..-=.-+++.....|+.+..
T Consensus 425 g-~Ln~~ESlEl~r~vL~q~r~~ll 448 (494)
T 1bpo_A 425 G-QLNKYESLELCRPVLQQGRKQLL 448 (494)
T ss_dssp S-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred C-ccchHHhhHHhHHHHhccHHHHH
Confidence 6 45554333444554555554433
No 342
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.07 E-value=91 Score=23.37 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=26.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 283 (498)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555555556666777777666655666665555555555443
No 343
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.04 E-value=88 Score=21.72 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=22.5
Q ss_pred ChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHH
Q 041942 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191 (498)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 191 (498)
..+.|.++++.+..+...+|..++.++...|+..-|.
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 4566666666666666666666666665555555443
No 344
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.96 E-value=2.1e+02 Score=22.02 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
..+.+..++..+.+.|+--|..--...+....+.|. ....+-.++.. .|+.++
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~--G~~~I~~eL~~-KGI~~~ 97 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGY--GPARIRQELNQ-KGISRE 97 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHH-TTCCHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCc--cHHHHHHHHHH-cCCCHH
Confidence 345666777888888776555544555665555442 24455566666 677766
No 345
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.94 E-value=5.3e+02 Score=25.46 Aligned_cols=85 Identities=11% Similarity=0.016 Sum_probs=49.9
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCh--hHHHHHHHHHH-hCC--------------CH-HHHHHHHHHHHHC-----CCCC
Q 041942 312 DMYAKCGSIERAIEVFLGMRDRDV--STWSTLIGGLA-FHG--------------FA-EESIAMFREMQRL-----KVRP 368 (498)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~-~~~--------------~~-~~A~~~~~~m~~~-----~~~p 368 (498)
.-+...|++++|..+|.-..+.|. ...|.++.-.. ... ++ ..|.++.+..... .+.+
T Consensus 451 ~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~ 530 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHV 530 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCH
T ss_pred HHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccH
Confidence 345678999999999988887553 34454444332 211 12 2444444443222 2333
Q ss_pred -CHHHHHHHHH-----HHhhcCCHHHHHHHHHHh
Q 041942 369 -TEITFVGVLV-----ACSHAGKVEEGKKYFKLM 396 (498)
Q Consensus 369 -~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~ 396 (498)
+..|+..|+. .+...|+++.|.+.++++
T Consensus 531 ~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 531 KNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3456666653 236789999999888775
No 346
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.08 E-value=3.8e+02 Score=23.47 Aligned_cols=129 Identities=10% Similarity=-0.015 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHhC-C----CCCCHhhHHHH---HHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCh
Q 041942 85 NPLDAVFLYTQMEKC-S----IKPNKFTFSFV---LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156 (498)
Q Consensus 85 ~~~~A~~~~~~m~~~-~----~~p~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 156 (498)
+-++|..+|..+... + ..|+....... +..+.+.-+ -+++..+.+.|+.|...+..-++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456788888877643 2 23333222111 222222222 25667777888888888888888888877778
Q ss_pred hHHHHhhccCCC-CCcchHHH---HHH----HHHhcCChHHHHHHHhcCC-CCCcchHHHHHHHHHhcCC
Q 041942 157 NTASVLFDGDAK-MDVVAWSS---LTA----GYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGE 217 (498)
Q Consensus 157 ~~A~~~~~~~~~-~~~~~~~~---l~~----~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 217 (498)
+.+.++++.... .....+.. ++. ...+..+.++...++.... ..+......++.-.....-
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCc
Confidence 888888875432 11122211 111 1233457888888888744 3344445555544444443
No 347
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=22.94 E-value=3.2e+02 Score=22.58 Aligned_cols=81 Identities=12% Similarity=-0.018 Sum_probs=38.0
Q ss_pred HHHhcCCHHHHHHHHhcCC-C---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhhcCCH
Q 041942 313 MYAKCGSIERAIEVFLGMR-D---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT--FVGVLVACSHAGKV 386 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~ 386 (498)
..+..|+.+-+..+++... . .+..-.+.+.. .+..++.....++++.+.+.|..++... -.+.+...++.|+.
T Consensus 154 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 232 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232 (285)
T ss_dssp HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 3445667666666665422 1 22222222322 2344554445566666666666554321 11223334455666
Q ss_pred HHHHHHHH
Q 041942 387 EEGKKYFK 394 (498)
Q Consensus 387 ~~a~~~~~ 394 (498)
+-+..+++
T Consensus 233 ~~v~~Ll~ 240 (285)
T 1wdy_A 233 GLVQRLLE 240 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55444443
No 348
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.81 E-value=1.5e+02 Score=21.73 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=29.9
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCh
Q 041942 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156 (498)
Q Consensus 111 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 156 (498)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3444445555667777888777776666666666666777766654
No 349
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.79 E-value=5.6e+02 Score=25.30 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=19.1
Q ss_pred HHHHHH--HhCCCchHHHHHHHHhhhCCCccCC
Q 041942 438 LLSNIY--ASRGEWNRVEKVRKLMDDSDIKKQP 468 (498)
Q Consensus 438 ~l~~~~--~~~g~~~~A~~~~~~m~~~~~~~~~ 468 (498)
.++.++ ...|+|++|++.++++ ++-|..
T Consensus 541 ~l~~f~~~~~~g~~~~AL~~i~~L---~llPl~ 570 (661)
T 2qx5_A 541 NISSIRELYFNKQWQETLSQMELL---DLLPFS 570 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHT---SCSCC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhC---CCCCCC
Confidence 344444 7899999999888886 454533
No 350
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.47 E-value=94 Score=19.27 Aligned_cols=21 Identities=5% Similarity=0.052 Sum_probs=16.2
Q ss_pred CCchHHHHHHHHhhhCCCccC
Q 041942 447 GEWNRVEKVRKLMDDSDIKKQ 467 (498)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~~~ 467 (498)
-+++.|+..|.++...|--|+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~ 54 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPE 54 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCG
T ss_pred CCHHHHHHHHHHHHHcCCCCH
Confidence 378899999999987765444
No 351
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.53 E-value=1.2e+02 Score=25.23 Aligned_cols=53 Identities=8% Similarity=-0.224 Sum_probs=32.6
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCCh-------HHHHHHHHHHHhc---CChhHHHHhhcc
Q 041942 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNR-------FVRNSLIYFHANC---GDLNTASVLFDG 165 (498)
Q Consensus 112 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---g~~~~A~~~~~~ 165 (498)
+...++.|+.+.+..+++.+.+.|..++. .-.+.| ...+.. |+.+-+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhc
Confidence 44456778888888888888887765543 222333 333344 666666666643
No 352
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.32 E-value=1.6e+02 Score=22.39 Aligned_cols=59 Identities=7% Similarity=0.056 Sum_probs=24.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccC-CchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCC
Q 041942 259 MRSVGERPDDVTMLSLLTACADLG-DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319 (498)
Q Consensus 259 m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (498)
|.+.|++++..-. .++..+...+ ..-.|.+++ +.+...+...+..|...-++.+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~-~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELY-KKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHH-HHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHH-HHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 4445555444322 2233333333 444555555 333333333333333334444444443
No 353
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=21.20 E-value=3.6e+02 Score=22.43 Aligned_cols=50 Identities=14% Similarity=0.008 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHH-----ccCCCCCc----hHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 414 DVELGRLANKRLL-----NMRKDESG----DYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 414 ~~~~a~~~~~~~~-----~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
-.+.|...|+.+. ++.|.+|. +.+.=+-.|.-.|++++|..+-++..+..
T Consensus 145 ~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~A 203 (234)
T 2br9_A 145 AAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 203 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4456777777776 35676763 23333334445799999998877765543
No 354
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.83 E-value=1.3e+02 Score=20.73 Aligned_cols=25 Identities=4% Similarity=0.072 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 435 DYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
.+...+..+.+.|+|++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 4556677777778887777655544
No 355
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.69 E-value=3e+02 Score=21.31 Aligned_cols=53 Identities=15% Similarity=0.002 Sum_probs=37.4
Q ss_pred hCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HhhcCCHHHHHHHHHHhHHh
Q 041942 347 FHGFAEESIAMFREMQRLKVRP--TEITFVGVLV-A-----CSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~~ 399 (498)
..|++=+|.++|+..=...-.+ ....|..||+ . ..+.|+...|..++.+....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3488889988888886654445 4556666666 2 24568888888888887664
No 356
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.65 E-value=1.1e+02 Score=19.47 Aligned_cols=44 Identities=18% Similarity=0.027 Sum_probs=27.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 117 (498)
++.++..++...-.++++..+.+..+.| ..+..+|.--.+.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4556666666666777777777777666 4555566555555544
No 357
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.53 E-value=4.3e+02 Score=23.14 Aligned_cols=79 Identities=9% Similarity=-0.071 Sum_probs=38.7
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHh
Q 041942 312 DMYAKCGSIERAIEVFLGMRD--------RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT--FVGVLVACS 381 (498)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~ 381 (498)
...+..|+.+-+.-+++.-.. .|..-++.| ...+..|+.+ +.+.+++.|..++... -.+-+...+
T Consensus 178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~ 252 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLSV 252 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 334566777777777764322 222222222 2334555544 3444455565554221 112233345
Q ss_pred hcCCHHHHHHHHHH
Q 041942 382 HAGKVEEGKKYFKL 395 (498)
Q Consensus 382 ~~g~~~~a~~~~~~ 395 (498)
..|+.+-+.-+++.
T Consensus 253 ~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 253 RAAMVLLTKELLQK 266 (364)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HhChHHHHHHHHHc
Confidence 56777777777765
No 358
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.19 E-value=91 Score=22.78 Aligned_cols=53 Identities=4% Similarity=-0.080 Sum_probs=31.8
Q ss_pred hHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHh
Q 041942 107 TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162 (498)
Q Consensus 107 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 162 (498)
.|.-.|...+.+++.+-|.++++..++.| +...+.+++-.|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 34445555666666666766666666654 555566666666555555555554
No 359
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.08 E-value=3.8e+02 Score=22.30 Aligned_cols=170 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCchHHHHHHHHHHHhhcCCcchhh
Q 041942 228 VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC-ADLGDLEVGKKVHCTLLDMTSGVAKVLH 306 (498)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (498)
|..-+..-.-.++...-+.+++++....++.+.+.+...+..--+.|-.+| -..|....+++++ ..+++.........
T Consensus 3 ~~~~~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRii-ssieqke~~~~~~~ 81 (236)
T 3iqu_A 3 MGSMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVL-SSIEQKSNEEGSEE 81 (236)
T ss_dssp TTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSTTCCC
T ss_pred cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHhhcCCHH
Q ss_pred HHHHHHHHHh------cCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHH
Q 041942 307 GNALIDMYAK------CGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFA-----------------EESIAMFREMQR 363 (498)
Q Consensus 307 ~~~l~~~~~~------~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~A~~~~~~m~~ 363 (498)
...++..|.+ ..--.+.+.+++...-|+..+-..-+-.+-..|++ +.+.+.|+++.+
T Consensus 82 ~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~ 161 (236)
T 3iqu_A 82 KGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMD 161 (236)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q ss_pred ---CCCCCCHHHHHHHH-----HHHhhcCCHHHHHHHHHHhHH
Q 041942 364 ---LKVRPTEITFVGVL-----VACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 364 ---~~~~p~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..++|...+...|+ -.|--.+++++|.++-+....
T Consensus 162 iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 162 ISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 360
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.01 E-value=4.8e+02 Score=23.39 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCC--hHHHHHHHHHHHhCCCCCCHH
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVPKRDV---VSWNAMISGYVLCGM--NKQALEMFEEMRSVGERPDDV 269 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 269 (498)
...++.-|...++.++|.+.++++..|.- .+...+..++-+.++ .+....++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45667777778888888888888776531 233344444444332 345666777777666554443
Done!