BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041947
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 105 bits (263), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Query: 6 ASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS 65
+SV V A DLL +GHR+LDVRT EEF++ H GA+NVPY+ G KN +FL QV+S
Sbjct: 18 SSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSS 77
Query: 66 VCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLE---GGYSAWVDEGV 110
+ D+IIV C SGGR+++A DL +A T ++ GGYSAW G+
Sbjct: 78 HFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGL 125
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 27/109 (24%)
Query: 23 FLDVRTTEEFNESHVHGALNVPYLFITQE-----------GR------------VKNPEF 59
F+DVRT E+ E H+ A+N P LF E G+ K +
Sbjct: 20 FVDVRTEGEYEEDHILNAINXP-LFKNNEHNEVGTIYKXQGKHEAIQKGFDYVSYKLKDI 78
Query: 60 LTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAW 105
Q A + D+I++ C GG + V+L ++ +V +LEGGY A+
Sbjct: 79 YLQAAELALNYDNIVIYCARGGXRSGSIVNLLSSLGVNVYQLEGGYKAY 127
>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
pdb|1URH|B Chain B, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
Length = 280
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 23/126 (18%)
Query: 15 DLLSSGH----RFLDVRTTEEFN-----------ESHVHGALNVPYLFITQEGRVKNPEF 59
D+L + H + +D R FN H+ GALNVP+ + +EG +K +
Sbjct: 158 DVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE 217
Query: 60 LTQV--ASVCSKEDHIIVVCNSGGRA---LRACVDLRNAHVTKLEGGYSAWVDEGVAGDK 114
L + S + IIV SG A L A L +V +G +S W G D
Sbjct: 218 LDAIFFGRGVSYDKPIIVSXGSGVTAAVVLLALATLDVPNVKLYDGAWSEW---GARADL 274
Query: 115 PLEELK 120
P+E +K
Sbjct: 275 PVEPVK 280
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 23 FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG-- 80
++DVR E++ + HV GA+N+P + + R+ +V K D + V CN+G
Sbjct: 4 WIDVRVPEQYQQEHVQGAINIPLKEVKE--RI--------ATAVPDKNDTVKVYCNAGRQ 53
Query: 81 -GRALRACVDLRNAHVTKLEG 100
G+A ++ HV G
Sbjct: 54 SGQAKEILSEMGYTHVENAGG 74
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 23 FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR 82
LDVR +N+ H+ GA+ +P E L AS ++ I V +G
Sbjct: 23 ILDVRDRSTYNDGHIMGAMAMPI------------EDLVDRASSSLEKSRDIYVYGAGDE 70
Query: 83 ALRACVD-LRNA---HVTKLEGGYSAW 105
V+ LR+A HV++L+GG +AW
Sbjct: 71 QTSQAVNLLRSAGFEHVSELKGGLAAW 97
>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|B Chain B, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|C Chain C, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|D Chain D, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c
Length = 115
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 23 FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR 82
LDVR +N+ H+ GA P E L AS ++ I V +G
Sbjct: 25 ILDVRDRSTYNDGHIXGAXAXPI------------EDLVDRASSSLEKSRDIYVYGAGDE 72
Query: 83 ALRACVD-LRNA---HVTKLEGGYSAWVDEGVAGDKPLE 117
V+ LR+A HV++L+GG +AW + + G LE
Sbjct: 73 QTSQAVNLLRSAGFEHVSELKGGLAAW--KAIGGPTELE 109
>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|B Chain B, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|C Chain C, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
Length = 106
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 23 FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR 82
LDVR +N+ H+ GA P E L AS ++ I V +G
Sbjct: 16 ILDVRDRSTYNDGHIXGAXAXPI------------EDLVDRASSSLEKSRDIYVYGAGDE 63
Query: 83 ALRACVD-LRNA---HVTKLEGGYSAWVDEGVAGDKPLE 117
V+ LR+A HV++L+GG +AW + + G LE
Sbjct: 64 QTSQAVNLLRSAGFEHVSELKGGLAAW--KAIGGPTELE 100
>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|B Chain B, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|C Chain C, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|D Chain D, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
Length = 141
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 23 FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR 82
LDVR +N+ H+ GA P E L AS ++ I V +G
Sbjct: 20 ILDVRDRSTYNDGHIXGAXAXPI------------EDLVDRASSSLEKSRDIYVYGAGDE 67
Query: 83 ALRACVD-LRNA---HVTKLEGGYSAW 105
V+ LR+A HV++L+GG +AW
Sbjct: 68 QTSQAVNLLRSAGFEHVSELKGGLAAW 94
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 23/101 (22%)
Query: 16 LLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS---VCSKEDH 72
L G LDVR +E+ H+ A ++P L+++A+ ++
Sbjct: 385 LAQQGLWLLDVRNVDEWAGGHLPQAHHIP---------------LSKLAAHIHDVPRDGS 429
Query: 73 IIVVCNSGGRALRACVDLRNAH----VTKLEGGYSAWVDEG 109
+ V C +GGR+ A LR AH V GGY AW +G
Sbjct: 430 VCVYCRTGGRSAIAASLLR-AHGVGDVRNXVGGYEAWRGKG 469
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 24 LDVRTTEEFNESHVHGALNVPY--LFITQEG 52
LDVR + F + H+ G+LN+P+ F+T G
Sbjct: 290 LDVRPADAFAKRHLAGSLNIPWNKSFVTWAG 320
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 23 FLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKED---HIIVVCNS 79
+DVR E++ H+ ++NVPY + EF Q+ K D +I C S
Sbjct: 43 LVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIG--IPKPDSAKELIFYCAS 100
Query: 80 ---GGRALRACVDLRNAHVTKLEGGYSAWVDEGVAGDK 114
GG A + ++ + G + WV G GDK
Sbjct: 101 GKRGGEAQKVASSHGYSNTSLYPGSXNDWVSHG--GDK 136
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 3 GDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
GD + D D LS LDVR E + GA+N+P E R + E
Sbjct: 470 GDATPIHFDQI-DNLSEDQLLLDVRNPGELQNGGLEGAVNIP----VDELRDRXHEL--- 521
Query: 63 VASVCSKEDHIIVVCNSGGRALRACVDLRN--AHVTKLEGGYSAW 105
K+ II+ C G R A L N L GGY +
Sbjct: 522 -----PKDKEIIIFCQVGLRGNVAYRQLVNNGYRARNLIGGYRTY 561
>pdb|3HZU|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Ssea (Rhodanese) From Mycobacterium
Tuberculosis
Length = 318
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 25/118 (21%)
Query: 23 FLDVRTTEEFN----------------ESHVHGALNVPYLFITQE-GRVKNPEFLTQVAS 65
+DVR+ EE+ H+ A+++P+ E GR ++ E L ++
Sbjct: 195 LIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADESGRFRSREELERLYD 254
Query: 66 VCSKEDHIIVVCNSGGRALRACVDLRN----AHVTKLEGGYSAWVD----EGVAGDKP 115
+ +D +V C G R+ L + A V +G ++ W + VAG++P
Sbjct: 255 FINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWGNAVRVPIVAGEEP 312
>pdb|3IWH|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
pdb|3MZZ|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
Length = 103
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 7 SVGVDTAKDLL--SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVA 64
S+ D K+ L S + +DVRT EE ++ A +P I P+ L
Sbjct: 3 SITTDELKNKLLESKPVQIVDVRTDEETAXGYIPNAKLIPXDTI--------PDNLNSF- 53
Query: 65 SVCSKEDHIIVVCNSGGRALRAC--VDLRNAHVTKLEGGYSAWVDEGV 110
+K + +VC G R+ + ++ +EGG AW DEG+
Sbjct: 54 ---NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGXHAWGDEGL 98
>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein
(Tvg0868615) From Thermoplasma Volcanium, Northeast
Structural Genomics Consortium Target Tvr109a
Length = 108
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 12 TAKDLLSS--GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSK 69
A DL + + LDVR E + ++N+P I++ L + + +
Sbjct: 7 NAADLYENIKAYTVLDVREPFELIFGSIANSINIP---ISE---------LREKWKILER 54
Query: 70 EDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYSAWVDEG 109
+ V+C G R+ A L ++ +EGG +W++EG
Sbjct: 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSWIEEG 96
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 13 AKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDH 72
++D+ + LDVR E+N H+ A++VP+ G+ L + +K D
Sbjct: 380 SEDITGNESHILDVRNDNEWNNGHLSQAVHVPH------GK------LLETDLPFNKNDV 427
Query: 73 IIVVCNSGGRA 83
I V C SG R+
Sbjct: 428 IYVHCQSGIRS 438
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 24 LDVRTTEEFNESHVHGALNVPY--LFITQEG 52
D+R+ E ++ H+ G +N+PY FI Q G
Sbjct: 300 FDLRSKEAYHGGHIEGTINIPYDKNFINQIG 330
>pdb|3O3W|A Chain A, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|B Chain B, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|C Chain C, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|D Chain D, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|E Chain E, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|F Chain F, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|G Chain G, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|H Chain H, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|I Chain I, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
Length = 126
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQV 63
D+A + +D K G +DVR E + E H+ A+++P I ++
Sbjct: 21 DIADLSIDIKKGY--EGIIVVDVRDAEAYKECHIPTAISIPGNKINED-----------T 67
Query: 64 ASVCSKEDHIIV-----VCNSGGRALRACVDLRNAHVTKLEGGYSAWVDE 108
SKE II CN +A L V +L GG W E
Sbjct: 68 TKRLSKEKVIITYCWGPACNGATKAAAKFAQL-GFRVKELIGGIEYWRKE 116
>pdb|1TMO|A Chain A, Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 43 VPYLFITQEGRVKNPEFLTQVASVCSKEDHII 74
VPY+ T++G K PE+ A +C E H+I
Sbjct: 313 VPYVMGTKDGVAKTPEW---AAPICGVEAHVI 341
>pdb|3NHV|A Chain A, Crystal Structure Of Bh2092 Protein From Bacillus
Halodurans, Northeast Structural Genomics Consortium
Target Bhr228f
pdb|3NHV|B Chain B, Crystal Structure Of Bh2092 Protein From Bacillus
Halodurans, Northeast Structural Genomics Consortium
Target Bhr228f
pdb|3NHV|C Chain C, Crystal Structure Of Bh2092 Protein From Bacillus
Halodurans, Northeast Structural Genomics Consortium
Target Bhr228f
pdb|3NHV|D Chain D, Crystal Structure Of Bh2092 Protein From Bacillus
Halodurans, Northeast Structural Genomics Consortium
Target Bhr228f
pdb|3NHV|E Chain E, Crystal Structure Of Bh2092 Protein From Bacillus
Halodurans, Northeast Structural Genomics Consortium
Target Bhr228f
Length = 144
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQV 63
D+A + +D K G +DVR E + E H+ A+++P I ++
Sbjct: 19 DIADLSIDIKKGY--EGIIVVDVRDAEAYKECHIPTAISIPGNKINED-----------T 65
Query: 64 ASVCSKEDHIIV-----VCNSGGRALRACVDLRNAHVTKLEGGYSAWVDE 108
SKE II CN +A L V +L GG W E
Sbjct: 66 TKRLSKEKVIITYCWGPACNGATKAAAKFAQL-GFRVKELIGGIEYWRKE 114
>pdb|1O5F|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|A Chain A, Extracellular Domain Of Human Hepsin
pdb|1O5E|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
Length = 114
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 5 VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVA 64
VA + + L + H LDVRT GA F EGR+ + + L +V
Sbjct: 40 VAGLSCEEMGFLRALTHSELDVRTA---------GAAGTSGFFCVDEGRLPHTQRLLEVI 90
Query: 65 SV--CSKEDHIIVVCNSGGR 82
SV C + + +C GR
Sbjct: 91 SVCDCPRGRFLAAICQDCGR 110
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 5 VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVA 64
VA + + L + H LDVRT GA F EGR+ + + L +V
Sbjct: 40 VAGLSCEEMGFLRALTHSELDVRTA---------GAAGTSGFFCVDEGRLPHTQRLLEVI 90
Query: 65 SV--CSKEDHIIVVCNSGGR 82
SV C + + +C GR
Sbjct: 91 SVCDCPRGRFLAAICQDCGR 110
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 16 LLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIV 75
++ +G +DVR E + + G++N+P E ++ V +D I +
Sbjct: 499 IVENGGYLIDVREPNELKQGXIKGSINIPL-----------DELRDRLEEVPVDKD-IYI 546
Query: 76 VCNSGGRALRACVDL--RNAHVTKLEGGYSAW 105
C G R A L + V ++GG+ +
Sbjct: 547 TCQLGXRGYVAARXLXEKGYKVKNVDGGFKLY 578
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 70 EDHIIVVCNSGGRALRACVDLRN---AHVTKLEGGYSAWVDEGV 110
E ++V C + RA A LR + EGG W++EG+
Sbjct: 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGL 125
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 23 FLDVRTTEEFNESHVHGALNVPYLFITQE 51
LDVRT EE+ H+ G+ + P + QE
Sbjct: 285 LLDVRTPEEYEAGHLPGSRSTPGGQLVQE 313
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 25 DVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG-GRA 83
DVR + F ++H A N+P + E + P + D I V + G G A
Sbjct: 28 DVREEDPFAQAHPLFAANLPLSRLELEIHARVP-----------RRDTPITVYDDGEGLA 76
Query: 84 LRACV---DLRNAHVTKLEGGYSAWVDEG 109
A DL + V L+GG S W + G
Sbjct: 77 PVAAQRLHDLGYSDVALLDGGLSGWRNAG 105
>pdb|3TG1|B Chain B, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 158
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 16 LLSSGHRFLDVRTTEEFNESHVHGALNV 43
L S G +D R E+N+SH+ GA+++
Sbjct: 30 LPSQGPVIIDCRPFMEYNKSHIQGAVHI 57
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 5 VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVA 64
VA + + L + H LDVRT GA F EGR+ + + L +V
Sbjct: 40 VAGLSCEEMGFLRALTHSELDVRTA---------GANGTSGFFCVDEGRLPHTQRLLEVI 90
Query: 65 SV--CSKEDHIIVVCNSGGR 82
SV C + + +C GR
Sbjct: 91 SVCDCPRGRFLAAICQDCGR 110
>pdb|2OUC|A Chain A, Crystal Structure Of The Map Kinase Binding Domain Of
Mkp5
pdb|2OUC|B Chain B, Crystal Structure Of The Map Kinase Binding Domain Of
Mkp5
Length = 142
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 2 AGDVASVGVDTAKD-LLSSGHRFLDVRTTEEFNESHVHGALNV 43
D+A +K L S G +D R E+N+SH+ GA+++
Sbjct: 5 PNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHI 47
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 15/105 (14%)
Query: 3 GDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQ 62
GD + D D LS LDVR E + GA+N+P E R + E
Sbjct: 470 GDATPIHFDQI-DNLSEDQLLLDVRNPGELQNGGLEGAVNIP----VDELRDRXHEL--- 521
Query: 63 VASVCSKEDHIIVVCNSGGRALRACVDLRN--AHVTKLEGGYSAW 105
K+ II+ G R A L N L GGY +
Sbjct: 522 -----PKDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYRTY 561
>pdb|1M2T|A Chain A, Mistletoe Lectin I From Viscum Album In Complex With
Adenine Monophosphate. Crystal Structure At 1.9 A
Resolution
pdb|2R9K|A Chain A, Crystal Structure Of Misteltoe Lectin I In Complex With
Phloretamide
Length = 254
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 24 LDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVV--CNSGG 81
L +RT ++ + + V +++ N L Q S+ ++V N+GG
Sbjct: 4 LRLRTDQQTTGAEYFSFITVLRDYVSSGSFSNNIPLLRQSTVPVSEGQRFVLVELTNAGG 63
Query: 82 RALRACVDLRNAHVTKLEGGYSAW 105
+ A +D+ N +V E G ++
Sbjct: 64 DTITAAIDVTNLYVVAYEAGNQSY 87
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 3 GDVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVP 44
GD + D D LS LDVR E + GA+N+P
Sbjct: 470 GDATPIHFDQI-DNLSEDQLLLDVRNPGELQNGGLEGAVNIP 510
>pdb|4FD5|A Chain A, Crystal Structure Of Arylalkylamine N-Acetyltransferase 2
From Aedes Aegypti
pdb|4FD6|A Chain A, Crystal Structure Of Native Arylalkylamine
N-Acetyltransferase 2 From The Yellow Fever Mosquito,
Aedes Aegypti
Length = 222
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 95 VTKLEGGYSAWVDEG----VAGDKPLEELKISCK 124
+TK E Y+ ++DE D P E+LKI CK
Sbjct: 186 ITKCEINYTDYLDENGEQIFVVDPPHEKLKIMCK 219
>pdb|2F6U|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Citrate
pdb|2F6U|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Citrate
pdb|2F6X|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Sn-G1p And Mpd
pdb|2F6X|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Sn-G1p And Mpd
Length = 234
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 41 LNVPYLFITQEGRVKNPEFLTQVASVCSK 69
N+P ++I G NPE + +V V K
Sbjct: 162 FNLPIIYIEYSGTYGNPELVAEVKKVLDK 190
>pdb|3D7W|A Chain A, Mistletoe Lectin I In Complex With Zeatin
Length = 254
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 73 IIVVCNSGGRALRACVDLRNAHVTKLEGGYSAW 105
++ + N+GG + A +D+ N +V E G ++
Sbjct: 55 LVELTNAGGDTITAAIDVTNLYVVAYEAGNQSY 87
>pdb|2OVW|A Chain A, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|B Chain B, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|C Chain C, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|D Chain D, Endoglucanase I Complexed With Cellobiose
pdb|3OVW|A Chain A, Endoglucanase I Native Structure
pdb|3OVW|B Chain B, Endoglucanase I Native Structure
pdb|4OVW|A Chain A, Endoglucanase I Complexed With Epoxybutyl Cellobiose
pdb|4OVW|B Chain B, Endoglucanase I Complexed With Epoxybutyl Cellobiose
Length = 411
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 99 EGGYSAWVDEGVAG 112
EG + AW+D+GVAG
Sbjct: 350 EGDFMAWLDQGVAG 363
>pdb|1OVW|A Chain A, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|B Chain B, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|C Chain C, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|D Chain D, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
Length = 398
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 99 EGGYSAWVDEGVAG 112
EG + AW+D+GVAG
Sbjct: 350 EGDFMAWLDQGVAG 363
>pdb|3SU8|X Chain X, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 611
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 4 DVASVGVDTAKDLLSSGHRFLDVRTTEE------FNESHVHGALNVP 44
D+ + D DLL SG FLD + E ES +H L VP
Sbjct: 22 DLMTEMTDLTSDLLGSGIPFLDYKVYAERIFFPGHRESPLHRDLGVP 68
>pdb|3SUA|D Chain D, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|E Chain E, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|F Chain F, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 633
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 4 DVASVGVDTAKDLLSSGHRFLDVRTTEE------FNESHVHGALNVP 44
D+ + D DLL SG FLD + E ES +H L VP
Sbjct: 44 DLMTEMTDLTSDLLGSGIPFLDYKVYAERIFFPGHRESPLHRDLGVP 90
>pdb|3HM6|X Chain X, Crystal Structure Of The Cytoplasmic Domain Of Human
Plexin B1
Length = 644
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 4 DVASVGVDTAKDLLSSGHRFLDVRTTEE------FNESHVHGALNVP 44
D+ + D DLL SG FLD + E ES +H L VP
Sbjct: 55 DLMTEMTDLTSDLLGSGIPFLDYKVYAERIFFPGHRESPLHRDLGVP 101
>pdb|4AE2|A Chain A, Crystal Structure Of Human Fibrillar Procollagen Type Iii
C- Propeptide Trimer
pdb|4AE2|B Chain B, Crystal Structure Of Human Fibrillar Procollagen Type Iii
C- Propeptide Trimer
pdb|4AE2|C Chain C, Crystal Structure Of Human Fibrillar Procollagen Type Iii
C- Propeptide Trimer
pdb|4AK3|A Chain A, Crystal Structure Of Human Fibrillar Procollagen Type Iii
C- Propeptide Trimer
Length = 256
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 53 RVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNAHVTKLEGGYSAWVDEGVAG 112
++ E +T + SV + + +I S R C DL+ H G Y WVD
Sbjct: 18 KINTDEIMTSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEY--WVDPNQGC 75
Query: 113 DKPLEELKISCKF 125
L+ +K+ C
Sbjct: 76 K--LDAIKVFCNM 86
>pdb|2YJG|A Chain A, Structure Of The Lactate Racemase Apoprotein From
Thermoanaerobacterium Thermosaccharolyticum
pdb|2YJG|B Chain B, Structure Of The Lactate Racemase Apoprotein From
Thermoanaerobacterium Thermosaccharolyticum
Length = 436
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 49 TQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG 80
+++ +K EF++++A+V +K I++ N G
Sbjct: 255 SEKAHLKGCEFVSEIATVNAKPADIVITSNGG 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,001,155
Number of Sequences: 62578
Number of extensions: 149070
Number of successful extensions: 415
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 47
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)