Query 041947
Match_columns 126
No_of_seqs 110 out of 1142
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 12:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02160 thiosulfate sulfurtra 99.9 2.4E-25 5.2E-30 143.3 11.4 115 4-118 13-132 (136)
2 cd01533 4RHOD_Repeat_2 Member 99.9 3.7E-24 8E-29 132.9 10.3 95 4-109 8-109 (109)
3 PRK00162 glpE thiosulfate sulf 99.9 1.2E-23 2.6E-28 130.4 11.0 100 4-115 3-106 (108)
4 KOG1530 Rhodanese-related sulf 99.9 9E-24 1.9E-28 131.7 10.1 111 3-113 20-135 (136)
5 cd01518 RHOD_YceA Member of th 99.9 4.5E-24 9.8E-29 130.8 8.6 93 7-107 3-101 (101)
6 cd01527 RHOD_YgaP Member of th 99.9 9.1E-24 2E-28 128.9 8.8 96 5-112 1-99 (99)
7 cd01519 RHOD_HSP67B2 Member of 99.9 1.1E-23 2.5E-28 129.8 8.1 98 9-106 2-105 (106)
8 cd01521 RHOD_PspE2 Member of t 99.9 6E-23 1.3E-27 127.7 10.1 96 6-112 8-110 (110)
9 cd01523 RHOD_Lact_B Member of 99.9 1.1E-22 2.5E-27 124.3 9.1 92 8-106 1-99 (100)
10 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 2.5E-22 5.4E-27 132.7 11.0 109 4-112 34-162 (162)
11 cd01534 4RHOD_Repeat_3 Member 99.9 1.3E-22 2.8E-27 123.0 8.8 88 8-106 1-94 (95)
12 cd01520 RHOD_YbbB Member of th 99.9 1.4E-22 3.1E-27 129.2 9.4 100 8-107 1-126 (128)
13 cd01528 RHOD_2 Member of the R 99.9 3.4E-22 7.5E-27 122.4 8.8 91 8-107 2-98 (101)
14 cd01526 RHOD_ThiF Member of th 99.9 4.5E-22 9.8E-27 125.8 9.0 105 3-111 5-117 (122)
15 cd01524 RHOD_Pyr_redox Member 99.9 6.5E-22 1.4E-26 118.9 9.0 87 8-106 1-89 (90)
16 cd01448 TST_Repeat_1 Thiosulfa 99.9 7.9E-22 1.7E-26 124.5 9.7 102 8-109 2-122 (122)
17 cd01447 Polysulfide_ST Polysul 99.9 7.2E-22 1.6E-26 121.0 8.8 98 8-109 1-103 (103)
18 PRK11493 sseA 3-mercaptopyruva 99.9 1.3E-21 2.8E-26 139.5 10.2 110 6-115 5-136 (281)
19 cd01522 RHOD_1 Member of the R 99.9 9.5E-22 2.1E-26 123.6 8.5 99 8-108 1-105 (117)
20 cd01449 TST_Repeat_2 Thiosulfa 99.9 1.4E-21 3E-26 122.6 8.5 99 8-106 1-117 (118)
21 cd01444 GlpE_ST GlpE sulfurtra 99.9 2.2E-21 4.9E-26 117.5 8.9 88 7-106 1-95 (96)
22 cd01530 Cdc25 Cdc25 phosphatas 99.9 2.4E-21 5.2E-26 122.4 9.4 91 6-106 2-120 (121)
23 cd01525 RHOD_Kc Member of the 99.9 2.1E-21 4.5E-26 119.5 8.7 97 8-106 1-104 (105)
24 smart00450 RHOD Rhodanese Homo 99.9 4.8E-21 1E-25 115.8 9.5 93 19-111 3-100 (100)
25 PLN02723 3-mercaptopyruvate su 99.9 3.6E-21 7.8E-26 139.3 10.5 112 4-115 20-152 (320)
26 PF00581 Rhodanese: Rhodanese- 99.9 3.7E-21 7.9E-26 119.2 8.8 100 9-108 1-113 (113)
27 cd01535 4RHOD_Repeat_4 Member 99.9 5E-21 1.1E-25 124.4 9.3 91 13-115 2-97 (145)
28 PRK08762 molybdopterin biosynt 99.8 9.8E-21 2.1E-25 139.7 10.8 100 5-115 2-105 (376)
29 PRK09629 bifunctional thiosulf 99.8 1.1E-20 2.5E-25 146.1 10.7 110 6-115 9-130 (610)
30 cd01445 TST_Repeats Thiosulfat 99.8 1.5E-20 3.2E-25 121.3 9.3 99 8-106 1-137 (138)
31 cd01529 4RHOD_Repeats Member o 99.8 1.5E-20 3.2E-25 114.2 8.2 83 18-106 10-95 (96)
32 cd01531 Acr2p Eukaryotic arsen 99.8 1.2E-20 2.7E-25 117.7 8.1 95 5-108 1-112 (113)
33 PRK01415 hypothetical protein; 99.8 2.7E-20 5.9E-25 129.6 9.2 97 5-109 111-213 (247)
34 COG2897 SseA Rhodanese-related 99.8 8.7E-20 1.9E-24 129.3 10.8 117 4-120 9-144 (285)
35 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 4.9E-20 1.1E-24 115.0 7.6 93 6-106 2-112 (113)
36 PRK00142 putative rhodanese-re 99.8 1.2E-19 2.7E-24 130.8 9.6 96 5-108 111-212 (314)
37 PRK11493 sseA 3-mercaptopyruva 99.8 1.5E-19 3.4E-24 128.8 10.0 108 8-115 155-280 (281)
38 PRK05320 rhodanese superfamily 99.8 1.4E-19 3E-24 127.4 9.5 97 4-108 108-216 (257)
39 PLN02723 3-mercaptopyruvate su 99.8 1.4E-19 3.1E-24 131.0 9.5 107 8-114 192-317 (320)
40 cd01532 4RHOD_Repeat_1 Member 99.8 1.8E-19 4E-24 108.6 8.0 80 18-107 8-92 (92)
41 cd00158 RHOD Rhodanese Homolog 99.8 1.9E-19 4.2E-24 107.0 7.3 84 13-106 2-89 (89)
42 COG0607 PspE Rhodanese-related 99.8 9.3E-19 2E-23 108.2 9.6 87 18-114 18-108 (110)
43 COG2897 SseA Rhodanese-related 99.8 1.1E-18 2.4E-23 123.7 10.7 109 7-115 157-283 (285)
44 TIGR02981 phageshock_pspE phag 99.8 5.4E-19 1.2E-23 108.3 8.0 79 18-108 16-98 (101)
45 PRK09629 bifunctional thiosulf 99.8 9.4E-19 2E-23 135.5 10.7 109 7-115 148-272 (610)
46 PRK10287 thiosulfate:cyanide s 99.8 1.4E-18 3.1E-23 106.9 8.1 78 19-108 19-100 (104)
47 PRK07878 molybdopterin biosynt 99.8 2.1E-18 4.6E-23 127.9 9.3 98 4-111 285-387 (392)
48 PRK07411 hypothetical protein; 99.8 2.9E-18 6.3E-23 127.0 9.6 102 4-112 280-386 (390)
49 cd01446 DSP_MapKP N-terminal r 99.8 4.6E-18 9.9E-23 108.8 8.6 100 7-108 1-127 (132)
50 PRK11784 tRNA 2-selenouridine 99.8 4.2E-18 9.1E-23 124.1 8.3 106 9-114 4-135 (345)
51 TIGR03167 tRNA_sel_U_synt tRNA 99.7 8E-18 1.7E-22 121.2 8.0 95 20-114 2-121 (311)
52 PRK05597 molybdopterin biosynt 99.7 2.2E-17 4.7E-22 121.1 8.0 93 4-107 259-354 (355)
53 PRK05600 thiamine biosynthesis 99.6 6E-16 1.3E-20 114.0 7.2 92 5-103 270-369 (370)
54 COG1054 Predicted sulfurtransf 99.5 1.3E-14 2.8E-19 102.3 6.1 95 6-108 113-213 (308)
55 KOG1529 Mercaptopyruvate sulfu 99.5 1.1E-13 2.5E-18 97.0 8.7 111 6-116 5-138 (286)
56 KOG3772 M-phase inducer phosph 99.5 1.4E-13 2.9E-18 98.4 7.1 100 3-113 153-281 (325)
57 KOG2017 Molybdopterin synthase 99.5 1.1E-13 2.4E-18 99.4 5.4 98 4-108 315-419 (427)
58 PRK01269 tRNA s(4)U8 sulfurtra 99.4 5.4E-13 1.2E-17 101.5 7.9 77 11-99 398-481 (482)
59 KOG1529 Mercaptopyruvate sulfu 99.2 4E-11 8.6E-16 84.4 7.8 90 18-107 170-275 (286)
60 COG5105 MIH1 Mitotic inducer, 99.0 1.2E-09 2.5E-14 78.2 5.6 97 3-109 239-359 (427)
61 COG2603 Predicted ATPase [Gene 97.8 2.8E-05 6.1E-10 55.4 4.3 94 11-106 6-127 (334)
62 PF04273 DUF442: Putative phos 97.2 0.002 4.4E-08 39.9 6.6 76 7-89 14-105 (110)
63 PRK00142 putative rhodanese-re 97.1 0.00012 2.6E-09 53.3 0.4 57 9-76 17-75 (314)
64 KOG1093 Predicted protein kina 97.1 0.00013 2.7E-09 56.5 -0.2 92 4-105 620-718 (725)
65 TIGR01244 conserved hypothetic 97.0 0.006 1.3E-07 39.1 7.4 81 6-91 13-107 (135)
66 KOG1717 Dual specificity phosp 96.7 0.00096 2.1E-08 47.3 1.7 38 7-48 5-43 (343)
67 KOG3636 Uncharacterized conser 96.1 0.013 2.8E-07 44.7 4.7 82 21-106 327-427 (669)
68 PF13350 Y_phosphatase3: Tyros 95.7 0.066 1.4E-06 35.2 6.7 90 4-93 26-148 (164)
69 TIGR03167 tRNA_sel_U_synt tRNA 93.5 0.35 7.7E-06 35.4 6.3 66 5-80 135-206 (311)
70 PLN02727 NAD kinase 91.4 0.67 1.5E-05 38.7 6.0 81 6-91 267-364 (986)
71 cd00127 DSPc Dual specificity 90.3 1.3 2.8E-05 27.7 5.6 74 19-92 27-105 (139)
72 smart00195 DSPc Dual specifici 89.9 0.82 1.8E-05 28.8 4.4 74 19-93 26-103 (138)
73 COG3453 Uncharacterized protei 89.4 1.7 3.7E-05 27.5 5.2 75 6-89 14-106 (130)
74 PF00782 DSPc: Dual specificit 89.0 0.89 1.9E-05 28.4 4.1 73 21-93 20-98 (133)
75 PF05706 CDKN3: Cyclin-depende 88.8 1.1 2.5E-05 29.8 4.5 31 61-91 124-155 (168)
76 COG2453 CDC14 Predicted protei 86.9 1.6 3.4E-05 29.3 4.4 36 58-93 93-130 (180)
77 PRK12361 hypothetical protein; 81.2 4.1 8.8E-05 32.1 5.1 74 18-91 119-198 (547)
78 PRK11391 etp phosphotyrosine-p 80.6 3.3 7.2E-05 26.7 3.8 35 71-105 3-40 (144)
79 COG1891 Uncharacterized protei 79.1 4.7 0.0001 27.3 4.1 27 5-31 5-31 (235)
80 smart00226 LMWPc Low molecular 78.8 2.8 6.2E-05 26.5 3.0 33 73-105 1-37 (140)
81 PF03162 Y_phosphatase2: Tyros 77.0 5.4 0.00012 26.4 4.0 72 22-93 35-115 (164)
82 PTZ00393 protein tyrosine phos 76.7 3.7 7.9E-05 29.1 3.3 31 59-89 159-190 (241)
83 PRK10126 tyrosine phosphatase; 76.7 4.6 0.0001 26.0 3.6 35 71-105 3-40 (147)
84 COG0394 Wzb Protein-tyrosine-p 76.4 3.7 8.1E-05 26.4 3.0 34 71-104 3-40 (139)
85 PRK07688 thiamine/molybdopteri 74.3 2.8 6E-05 31.1 2.3 40 4-44 275-322 (339)
86 TIGR00853 pts-lac PTS system, 73.9 6 0.00013 23.7 3.3 36 70-105 3-44 (95)
87 PF01451 LMWPc: Low molecular 71.9 5.6 0.00012 25.1 3.1 33 73-105 1-41 (138)
88 PRK09590 celB cellobiose phosp 70.7 6.8 0.00015 24.0 3.1 35 71-105 2-42 (104)
89 KOG4053 Ataxin-1, involved in 70.1 4.2 9.2E-05 27.8 2.2 67 4-79 51-118 (224)
90 PTZ00242 protein tyrosine phos 69.7 6.1 0.00013 26.1 2.9 25 68-92 96-122 (166)
91 KOG4166 Thiamine pyrophosphate 69.4 13 0.00029 28.9 4.9 76 6-81 218-309 (675)
92 TIGR02689 ars_reduc_gluta arse 68.4 8.8 0.00019 24.0 3.4 32 71-102 1-36 (126)
93 PRK13530 arsenate reductase; P 68.4 8.9 0.00019 24.3 3.4 33 70-102 3-39 (133)
94 cd00079 HELICc Helicase superf 66.9 19 0.00041 21.6 4.7 42 61-102 19-62 (131)
95 cd05565 PTS_IIB_lactose PTS_II 66.3 16 0.00035 22.1 4.0 35 72-106 2-42 (99)
96 PF03853 YjeF_N: YjeF-related 65.9 21 0.00045 23.5 4.9 38 60-97 13-57 (169)
97 PF02302 PTS_IIB: PTS system, 64.5 13 0.00028 21.4 3.3 22 72-93 1-23 (90)
98 COG1204 Superfamily II helicas 64.0 32 0.0007 28.6 6.5 83 10-92 193-275 (766)
99 cd05564 PTS_IIB_chitobiose_lic 63.4 11 0.00023 22.5 2.9 34 72-105 1-40 (96)
100 PRK11784 tRNA 2-selenouridine 63.2 41 0.00088 25.1 6.4 25 10-34 154-179 (345)
101 COG0488 Uup ATPase components 63.0 21 0.00045 28.3 5.1 51 58-108 187-241 (530)
102 cd00115 LMWPc Substituted upda 61.5 11 0.00023 23.9 2.8 34 72-105 2-40 (141)
103 TIGR00197 yjeF_nterm yjeF N-te 60.8 32 0.0007 23.5 5.2 38 61-98 36-78 (205)
104 PF02863 Arg_repressor_C: Argi 60.4 20 0.00042 20.1 3.5 25 68-92 45-69 (70)
105 PRK10499 PTS system N,N'-diace 60.1 15 0.00032 22.4 3.2 23 71-93 4-26 (106)
106 cd05567 PTS_IIB_mannitol PTS_I 58.6 18 0.00038 21.0 3.2 23 71-93 1-24 (87)
107 TIGR02691 arsC_pI258_fam arsen 58.0 12 0.00026 23.6 2.6 30 73-102 1-34 (129)
108 PF03610 EIIA-man: PTS system 57.5 35 0.00077 20.8 4.6 33 68-100 55-90 (116)
109 cd00133 PTS_IIB PTS_IIB: subun 54.7 16 0.00034 20.2 2.5 22 72-93 1-23 (84)
110 PRK08117 4-aminobutyrate amino 52.7 25 0.00055 26.7 4.0 51 57-107 89-144 (433)
111 TIGR00824 EIIA-man PTS system, 47.9 64 0.0014 19.8 4.9 43 58-100 43-91 (116)
112 PRK06148 hypothetical protein; 47.5 33 0.00072 29.4 4.2 50 58-107 667-721 (1013)
113 PRK05639 4-aminobutyrate amino 46.0 36 0.00078 26.3 3.9 49 58-106 100-153 (457)
114 cd05563 PTS_IIB_ascorbate PTS_ 45.9 29 0.00062 19.8 2.7 22 72-93 1-23 (86)
115 cd05566 PTS_IIB_galactitol PTS 45.5 34 0.00074 19.6 3.0 23 71-93 1-24 (89)
116 smart00404 PTPc_motif Protein 44.3 39 0.00084 19.4 3.2 19 69-87 38-57 (105)
117 smart00012 PTPc_DSPc Protein t 44.3 39 0.00084 19.4 3.2 19 69-87 38-57 (105)
118 TIGR01118 lacA galactose-6-pho 43.4 90 0.002 20.2 6.0 51 12-84 17-70 (141)
119 PRK00103 rRNA large subunit me 42.1 68 0.0015 21.1 4.3 42 64-105 61-110 (157)
120 PRK12615 galactose-6-phosphate 42.1 1.1E+02 0.0023 20.6 6.0 54 12-85 17-73 (171)
121 PRK06917 hypothetical protein; 41.8 48 0.001 25.5 4.0 49 58-106 78-137 (447)
122 COG0062 Uncharacterized conser 41.7 1.1E+02 0.0024 21.2 5.3 37 62-98 39-82 (203)
123 PRK10565 putative carbohydrate 41.6 81 0.0018 24.9 5.3 32 67-98 57-93 (508)
124 PRK06918 4-aminobutyrate amino 41.0 53 0.0012 25.2 4.2 50 58-107 101-156 (451)
125 TIGR03372 putres_am_tran putre 40.5 54 0.0012 25.3 4.1 49 58-106 121-177 (442)
126 PRK00615 glutamate-1-semialdeh 40.5 47 0.001 25.5 3.8 49 58-106 97-150 (433)
127 PRK10310 PTS system galactitol 40.2 48 0.001 19.6 3.1 35 72-106 4-45 (94)
128 COG1440 CelA Phosphotransferas 40.2 51 0.0011 20.2 3.2 23 71-93 2-24 (102)
129 PRK07046 aminotransferase; Val 39.0 39 0.00085 26.1 3.2 45 59-105 120-169 (453)
130 PRK06062 hypothetical protein; 38.7 55 0.0012 25.2 3.9 50 57-106 98-152 (451)
131 PF02502 LacAB_rpiB: Ribose/Ga 38.6 1.1E+02 0.0024 19.8 5.3 57 12-88 16-75 (140)
132 PRK08360 4-aminobutyrate amino 38.2 55 0.0012 25.2 3.8 49 58-106 88-141 (443)
133 PTZ00110 helicase; Provisional 38.2 85 0.0018 24.9 5.0 36 68-103 375-412 (545)
134 KOG1404 Alanine-glyoxylate ami 38.1 83 0.0018 24.3 4.6 39 55-93 93-131 (442)
135 PLN03050 pyridoxine (pyridoxam 38.0 59 0.0013 23.0 3.7 29 70-98 60-93 (246)
136 PLN03049 pyridoxine (pyridoxam 37.2 1E+02 0.0022 24.0 5.2 28 71-98 60-92 (462)
137 PRK06149 hypothetical protein; 37.0 60 0.0013 27.8 4.2 49 58-106 628-681 (972)
138 COG0514 RecQ Superfamily II DN 36.7 46 0.00099 26.9 3.2 35 69-103 229-265 (590)
139 TIGR00614 recQ_fam ATP-depende 36.7 83 0.0018 24.3 4.6 36 68-103 224-261 (470)
140 TIGR00709 dat 2,4-diaminobutyr 36.6 59 0.0013 24.9 3.8 49 58-106 86-142 (442)
141 KOG3325 Membrane coat complex 36.6 94 0.002 20.7 4.1 47 58-104 17-65 (183)
142 PRK06082 4-aminobutyrate amino 36.2 64 0.0014 24.9 4.0 49 58-106 117-170 (459)
143 PRK05769 4-aminobutyrate amino 35.9 75 0.0016 24.4 4.3 49 58-106 101-155 (441)
144 PF07879 PHB_acc_N: PHB/PHA ac 35.8 43 0.00093 18.6 2.2 27 5-31 17-45 (64)
145 PRK08593 4-aminobutyrate amino 35.2 70 0.0015 24.6 4.0 49 58-106 89-143 (445)
146 KOG0342 ATP-dependent RNA heli 35.0 2.3E+02 0.0051 22.6 6.6 33 70-102 330-364 (543)
147 COG4992 ArgD Ornithine/acetylo 34.4 73 0.0016 24.5 3.9 46 57-103 87-140 (404)
148 PRK05571 ribose-5-phosphate is 34.3 1.3E+02 0.0029 19.6 5.9 56 12-86 17-75 (148)
149 PTZ00215 ribose 5-phosphate is 34.3 1.4E+02 0.003 19.6 5.8 55 12-86 19-78 (151)
150 PLN02918 pyridoxine (pyridoxam 33.9 1.2E+02 0.0026 24.3 5.1 28 71-98 136-168 (544)
151 PRK08622 galactose-6-phosphate 33.9 1.5E+02 0.0032 20.0 5.9 56 12-87 17-75 (171)
152 KOG1503 Phosphoribosylpyrophos 33.8 1.5E+02 0.0033 21.3 5.1 65 34-103 135-201 (354)
153 PRK12613 galactose-6-phosphate 33.8 1.3E+02 0.0029 19.4 5.8 48 12-82 17-67 (141)
154 PF14566 PTPlike_phytase: Inos 33.8 1.2E+02 0.0027 19.4 4.5 23 58-81 113-135 (149)
155 TIGR01120 rpiB ribose 5-phosph 33.3 1.4E+02 0.003 19.4 5.9 56 12-87 16-74 (143)
156 PF02590 SPOUT_MTase: Predicte 33.0 91 0.002 20.4 3.8 41 65-105 62-110 (155)
157 cd05568 PTS_IIB_bgl_like PTS_I 32.7 73 0.0016 17.7 3.0 22 72-93 2-24 (85)
158 TIGR01119 lacB galactose-6-pho 32.6 1.6E+02 0.0034 19.8 5.9 55 12-86 17-74 (171)
159 PLN02482 glutamate-1-semialdeh 32.4 77 0.0017 24.7 3.9 48 58-106 143-195 (474)
160 TIGR00700 GABAtrnsam 4-aminobu 32.1 99 0.0021 23.5 4.4 49 58-106 80-134 (420)
161 PRK06777 4-aminobutyrate amino 31.4 96 0.0021 23.6 4.2 49 58-106 87-141 (421)
162 PRK11522 putrescine--2-oxoglut 31.3 85 0.0018 24.3 3.9 48 59-106 129-184 (459)
163 PRK11192 ATP-dependent RNA hel 31.0 1.3E+02 0.0028 22.8 4.8 34 69-102 244-279 (434)
164 PRK05298 excinuclease ABC subu 30.9 87 0.0019 25.5 4.0 46 58-103 434-481 (652)
165 PRK07482 hypothetical protein; 30.7 1E+02 0.0022 23.9 4.3 50 57-106 97-157 (461)
166 TIGR01587 cas3_core CRISPR-ass 30.4 1E+02 0.0022 22.6 4.1 36 68-103 220-259 (358)
167 PF00102 Y_phosphatase: Protei 29.9 77 0.0017 21.3 3.2 18 68-85 168-186 (235)
168 PRK06931 diaminobutyrate--2-ox 28.8 1.1E+02 0.0025 23.6 4.2 49 58-106 105-161 (459)
169 cd00047 PTPc Protein tyrosine 28.4 66 0.0014 22.0 2.7 20 69-88 165-185 (231)
170 PF13607 Succ_CoA_lig: Succiny 27.9 1.5E+02 0.0033 18.9 4.1 45 57-102 43-91 (138)
171 PRK07495 4-aminobutyrate amino 27.6 1.1E+02 0.0024 23.3 4.0 49 58-106 87-141 (425)
172 PRK10590 ATP-dependent RNA hel 27.4 1.3E+02 0.0029 23.1 4.4 35 69-103 244-280 (456)
173 PRK05965 hypothetical protein; 27.3 1.3E+02 0.0029 23.2 4.4 49 58-106 94-153 (459)
174 TIGR00689 rpiB_lacA_lacB sugar 27.2 1.8E+02 0.0039 18.9 5.8 54 12-85 15-71 (144)
175 PRK05964 adenosylmethionine--8 27.0 1.3E+02 0.0029 22.8 4.3 49 58-106 89-148 (423)
176 TIGR00631 uvrb excinuclease AB 26.8 1.3E+02 0.0028 24.7 4.4 46 58-103 430-477 (655)
177 PRK11057 ATP-dependent DNA hel 26.7 1.3E+02 0.0028 24.3 4.3 36 68-103 234-271 (607)
178 PF04343 DUF488: Protein of un 26.5 77 0.0017 19.5 2.5 21 10-30 2-24 (122)
179 KOG2283 Clathrin coat dissocia 26.1 1.4E+02 0.0031 23.2 4.3 68 11-80 41-117 (434)
180 cd04468 S1_eIF5A S1_eIF5A: Euk 26.1 1.3E+02 0.0029 16.9 3.6 45 19-76 4-53 (69)
181 PRK12389 glutamate-1-semialdeh 26.1 1.1E+02 0.0023 23.4 3.7 48 58-106 97-149 (428)
182 PF09992 DUF2233: Predicted pe 26.0 81 0.0018 20.5 2.7 37 68-104 98-142 (170)
183 PRK09792 4-aminobutyrate trans 26.0 1.3E+02 0.0028 22.9 4.0 49 58-106 87-141 (421)
184 PRK09264 diaminobutyrate--2-ox 25.7 1.2E+02 0.0025 23.1 3.8 35 72-106 104-143 (425)
185 KOG4435 Predicted lipid kinase 25.4 1.7E+02 0.0036 22.9 4.4 50 64-113 110-165 (535)
186 PRK04837 ATP-dependent RNA hel 25.1 1.8E+02 0.004 22.0 4.7 34 69-102 254-289 (423)
187 TIGR01529 argR_whole arginine 24.9 1E+02 0.0022 19.9 2.9 24 69-92 121-144 (146)
188 PRK03341 arginine repressor; P 24.9 1E+02 0.0022 20.6 2.9 24 69-92 140-163 (168)
189 PRK06916 adenosylmethionine--8 24.6 1.6E+02 0.0035 22.8 4.4 49 58-106 103-162 (460)
190 KOG0333 U5 snRNP-like RNA heli 24.3 1.8E+02 0.0039 23.6 4.5 34 69-102 516-551 (673)
191 TIGR03096 nitroso_cyanin nitro 24.3 32 0.0007 22.1 0.5 10 34-43 124-133 (135)
192 PRK06058 4-aminobutyrate amino 23.9 1.6E+02 0.0035 22.5 4.3 49 58-106 103-157 (443)
193 PRK01297 ATP-dependent RNA hel 23.7 1.9E+02 0.0041 22.3 4.7 35 69-103 334-370 (475)
194 PF13241 NAD_binding_7: Putati 23.6 78 0.0017 18.8 2.1 32 69-101 6-39 (103)
195 TIGR02407 ectoine_ectB diamino 23.5 1.6E+02 0.0036 22.3 4.2 35 72-106 100-139 (412)
196 smart00194 PTPc Protein tyrosi 23.4 1.5E+02 0.0032 20.7 3.8 16 70-85 193-209 (258)
197 PRK00441 argR arginine repress 23.1 1.1E+02 0.0023 20.0 2.8 24 69-92 123-146 (149)
198 PRK11776 ATP-dependent RNA hel 23.0 1E+02 0.0022 23.7 3.0 35 69-103 241-277 (460)
199 PRK04537 ATP-dependent RNA hel 23.0 1.1E+02 0.0023 24.6 3.2 36 68-103 255-292 (572)
200 PF05990 DUF900: Alpha/beta hy 23.0 2.3E+02 0.005 19.7 4.6 38 55-92 138-175 (233)
201 TIGR01848 PHA_reg_PhaR polyhyd 22.9 95 0.0021 19.2 2.3 27 5-31 17-45 (107)
202 PF01488 Shikimate_DH: Shikima 22.8 1.4E+02 0.0031 18.6 3.3 34 69-103 11-47 (135)
203 PF14671 DSPn: Dual specificit 22.7 1.5E+02 0.0032 19.3 3.3 25 69-93 66-90 (141)
204 PRK07036 hypothetical protein; 22.7 1.8E+02 0.0039 22.6 4.4 49 58-106 99-158 (466)
205 PF00202 Aminotran_3: Aminotra 22.5 1.2E+02 0.0027 22.2 3.3 48 57-104 62-120 (339)
206 TIGR02133 RPI_actino ribose 5- 22.4 2.3E+02 0.0051 18.4 4.3 50 13-81 18-70 (148)
207 PRK12906 secA preprotein trans 22.4 2E+02 0.0043 24.4 4.6 36 68-103 438-475 (796)
208 COG0160 GabT 4-aminobutyrate a 22.1 1.9E+02 0.0041 22.7 4.3 51 57-107 102-158 (447)
209 PRK09694 helicase Cas3; Provis 22.1 2E+02 0.0044 24.6 4.7 46 57-102 547-597 (878)
210 PRK04280 arginine repressor; P 22.1 1.2E+02 0.0026 19.7 2.9 24 69-92 123-146 (148)
211 PRK13957 indole-3-glycerol-pho 22.1 3E+02 0.0066 19.6 6.3 84 8-93 135-223 (247)
212 PRK06938 diaminobutyrate--2-ox 21.9 1.8E+02 0.0038 22.6 4.2 34 74-107 129-168 (464)
213 PRK13104 secA preprotein trans 21.8 1.8E+02 0.0039 25.0 4.3 38 67-104 441-480 (896)
214 PRK13809 orotate phosphoribosy 21.3 2.7E+02 0.0059 19.1 4.6 47 67-113 115-173 (206)
215 PRK06105 aminotransferase; Pro 21.1 2E+02 0.0044 22.2 4.4 51 58-108 96-157 (460)
216 PF11385 DUF3189: Protein of u 20.9 1.3E+02 0.0028 19.7 2.8 19 72-90 1-19 (148)
217 PRK08621 galactose-6-phosphate 20.9 2.5E+02 0.0054 18.2 5.8 49 12-82 17-68 (142)
218 COG3414 SgaB Phosphotransferas 20.8 1.2E+02 0.0027 18.0 2.5 17 71-87 2-18 (93)
219 KOG2712 Transcriptional coacti 20.8 1E+02 0.0022 19.0 2.1 28 19-46 57-84 (108)
220 PRK05066 arginine repressor; P 20.6 1.3E+02 0.0028 19.8 2.7 25 69-93 127-151 (156)
221 PRK09273 hypothetical protein; 20.4 3.1E+02 0.0068 19.1 5.6 57 11-85 20-79 (211)
222 PRK07986 adenosylmethionine--8 20.4 2E+02 0.0044 22.0 4.2 49 58-106 90-148 (428)
223 PF08309 LVIVD: LVIVD repeat; 20.4 67 0.0014 16.1 1.1 14 18-31 20-33 (42)
224 PRK12898 secA preprotein trans 20.4 2.2E+02 0.0049 23.5 4.5 34 69-102 472-507 (656)
225 PRK07030 adenosylmethionine--8 20.3 2E+02 0.0043 22.4 4.1 49 58-106 94-153 (466)
226 COG2365 Protein tyrosine/serin 20.1 2.2E+02 0.0047 20.1 4.0 33 61-93 126-160 (249)
227 TIGR00730 conserved hypothetic 20.1 2.1E+02 0.0045 19.2 3.7 17 62-78 23-39 (178)
228 KOG1352 Vacuolar H+-ATPase V1 20.0 3.1E+02 0.0066 21.6 4.9 32 71-102 271-303 (618)
No 1
>PLN02160 thiosulfate sulfurtransferase
Probab=99.93 E-value=2.4e-25 Score=143.27 Aligned_cols=115 Identities=49% Similarity=0.795 Sum_probs=95.0
Q ss_pred CCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCc--cccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCc
Q 041947 4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGA--LNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGG 81 (126)
Q Consensus 4 ~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~ 81 (126)
.+..|+++++.+.+..+..|||+|++.||..|||||| +|+|+..+.....+.+..+...+...++++++||+||.+|.
T Consensus 13 ~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~ 92 (136)
T PLN02160 13 EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGA 92 (136)
T ss_pred eeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcH
Confidence 4678999999999865678999999999999999999 89998554333344445555555554578899999999999
Q ss_pred hHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCCccc
Q 041947 82 RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKPLEE 118 (126)
Q Consensus 82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~~~~ 118 (126)
||..++..|... +|+.|.||+.+|.++|+|+.+..++
T Consensus 93 RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~ 132 (136)
T PLN02160 93 RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEEE 132 (136)
T ss_pred HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccccC
Confidence 999999999887 7999999999999999999877433
No 2
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.92 E-value=3.7e-24 Score=132.88 Aligned_cols=95 Identities=25% Similarity=0.404 Sum_probs=79.9
Q ss_pred CCceeCHHHHHHhhh-C-CcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCC
Q 041947 4 DVASVGVDTAKDLLS-S-GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSG 80 (126)
Q Consensus 4 ~~~~i~~~~l~~~~~-~-~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g 80 (126)
.+..|+++++.+.+. + +.+|||+|++.+|..||||||+|+|+. ++...+... .+++++||+||.+|
T Consensus 8 ~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~-----------~l~~~~~~l~~~~~~~ivv~C~~G 76 (109)
T cd01533 8 HTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGA-----------ELVLRVGELAPDPRTPIVVNCAGR 76 (109)
T ss_pred cCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHH-----------HHHHHHHhcCCCCCCeEEEECCCC
Confidence 567899999999883 3 578999999999999999999999986 344444444 24678999999999
Q ss_pred chHHHHHHHHHhc---C-cceecccHHhHHhCC
Q 041947 81 GRALRACVDLRNA---H-VTKLEGGYSAWVDEG 109 (126)
Q Consensus 81 ~~s~~~~~~l~~~---~-v~~l~gG~~~w~~~g 109 (126)
.+|..++..|... + |+.+.||+.+|..+|
T Consensus 77 ~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 77 TRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred chHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 9999988888877 5 889999999999875
No 3
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.91 E-value=1.2e-23 Score=130.40 Aligned_cols=100 Identities=21% Similarity=0.370 Sum_probs=87.1
Q ss_pred CCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch
Q 041947 4 DVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR 82 (126)
Q Consensus 4 ~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~ 82 (126)
....|+++++.+.+ ..+.+|||+|++.+|..||||||+|+|.. .+..++.. ++.+++|+|||.+|.+
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~-----------~l~~~~~~-~~~~~~ivv~c~~g~~ 70 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTND-----------SLGAFMRQ-ADFDTPVMVMCYHGNS 70 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHH-----------HHHHHHHh-cCCCCCEEEEeCCCCC
Confidence 46789999999998 56689999999999999999999999985 44455544 4788999999999999
Q ss_pred HHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947 83 ALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP 115 (126)
Q Consensus 83 s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~ 115 (126)
+..++..|... +|+++.||+.+|..+++|++..
T Consensus 71 s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 71 SQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred HHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 99988888888 7999999999999999998764
No 4
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.91 E-value=9e-24 Score=131.71 Aligned_cols=111 Identities=41% Similarity=0.650 Sum_probs=99.5
Q ss_pred CCCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCC-CCeEEEEeCCC
Q 041947 3 GDVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSK-EDHIIVVCNSG 80 (126)
Q Consensus 3 ~~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ivvyc~~g 80 (126)
.....++.++++.++ .++.++||||.+.||.+||||.++|||+......+.+.+++|...+....++ ++.|||+|.+|
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG 99 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASG 99 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccC
Confidence 345678889999999 5569999999999999999999999999888888888899999999998754 55899999999
Q ss_pred chHHHHHHHHHhc---CcceecccHHhHHhCCCCCC
Q 041947 81 GRALRACVDLRNA---HVTKLEGGYSAWVDEGVAGD 113 (126)
Q Consensus 81 ~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~ 113 (126)
.|+..+...|... +|.+|.|||.+|.+.++|..
T Consensus 100 ~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 100 VRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred cchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 9999999999998 99999999999999888753
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.91 E-value=4.5e-24 Score=130.78 Aligned_cols=93 Identities=24% Similarity=0.364 Sum_probs=76.7
Q ss_pred eeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh--cCCCCeEEEEeCCCchH
Q 041947 7 SVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV--CSKEDHIIVVCNSGGRA 83 (126)
Q Consensus 7 ~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivvyc~~g~~s 83 (126)
.|+++++.+++ +++.+|||||++.||..||||||+|+|+..+.. +...+... .+++++|||||.+|.++
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~--------~~~~~~~~~~~~~~~~ivvyC~~G~rs 74 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFRE--------FPFWLDENLDLLKGKKVLMYCTGGIRC 74 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhH--------hHHHHHhhhhhcCCCEEEEECCCchhH
Confidence 58899999988 567899999999999999999999999975431 11122211 26889999999999999
Q ss_pred HHHHHHHHhc---CcceecccHHhHHh
Q 041947 84 LRACVDLRNA---HVTKLEGGYSAWVD 107 (126)
Q Consensus 84 ~~~~~~l~~~---~v~~l~gG~~~w~~ 107 (126)
..++.+|..+ +|+.++||+.+|..
T Consensus 75 ~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 75 EKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred HHHHHHHHHhCCcceeeechhHHHHhC
Confidence 9999998877 79999999999963
No 6
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.91 E-value=9.1e-24 Score=128.92 Aligned_cols=96 Identities=26% Similarity=0.442 Sum_probs=81.8
Q ss_pred CceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHH
Q 041947 5 VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRAL 84 (126)
Q Consensus 5 ~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~ 84 (126)
+..|+++++.+.+.++.+|||+|++.+|..+|||||+|+|+..+.. . ...++++++||+||.+|.++.
T Consensus 1 ~~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~-----------~-~~~~~~~~~iv~~c~~g~~s~ 68 (99)
T cd01527 1 LTTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLSQLES-----------E-GLPLVGANAIIFHCRSGMRTQ 68 (99)
T ss_pred CCccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChhHhcc-----------c-ccCCCCCCcEEEEeCCCchHH
Confidence 3578999999988555899999999999999999999999865431 1 112478899999999999999
Q ss_pred HHHHHHHhc---CcceecccHHhHHhCCCCC
Q 041947 85 RACVDLRNA---HVTKLEGGYSAWVDEGVAG 112 (126)
Q Consensus 85 ~~~~~l~~~---~v~~l~gG~~~w~~~g~~~ 112 (126)
.++..|.+. +++++.||+.+|..+|+|+
T Consensus 69 ~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 69 QNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 999999887 8999999999999998874
No 7
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.90 E-value=1.1e-23 Score=129.78 Aligned_cols=98 Identities=24% Similarity=0.431 Sum_probs=82.2
Q ss_pred CHHHHHHhhh--CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCCchHHH
Q 041947 9 GVDTAKDLLS--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSGGRALR 85 (126)
Q Consensus 9 ~~~~l~~~~~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g~~s~~ 85 (126)
+++++.++++ ++.+|||+|++.+|..||||||+|+|+..+.+......++|.+.+.+. ++++++||+||.+|.++..
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~ 81 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSKA 81 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHHH
Confidence 5778888775 468999999999999999999999999876554444556777777665 4678999999999999999
Q ss_pred HHHHHHhc---CcceecccHHhHH
Q 041947 86 ACVDLRNA---HVTKLEGGYSAWV 106 (126)
Q Consensus 86 ~~~~l~~~---~v~~l~gG~~~w~ 106 (126)
++..|... +|++|.||+.+|.
T Consensus 82 ~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 82 AAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred HHHHHHHcCCccceecCCcHHHHc
Confidence 88888777 7999999999996
No 8
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.90 E-value=6e-23 Score=127.69 Aligned_cols=96 Identities=28% Similarity=0.436 Sum_probs=80.1
Q ss_pred ceeCHHHHHHhh-h--CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCc-
Q 041947 6 ASVGVDTAKDLL-S--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGG- 81 (126)
Q Consensus 6 ~~i~~~~l~~~~-~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~- 81 (126)
..|+++++.+++ + ++.+|||+|++.+|..||||||+|+|...+. .+....++++++||+||.+|.
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~-----------~~~~~~i~~~~~vvvyc~~g~~ 76 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREIC-----------ENATAKLDKEKLFVVYCDGPGC 76 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhh-----------hHhhhcCCCCCeEEEEECCCCC
Confidence 468999999998 3 4589999999999999999999999986432 222344688999999999874
Q ss_pred -hHHHHHHHHHhc--CcceecccHHhHHhCCCCC
Q 041947 82 -RALRACVDLRNA--HVTKLEGGYSAWVDEGVAG 112 (126)
Q Consensus 82 -~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~ 112 (126)
++..++..|..+ ++++++||+.+|..+|+|+
T Consensus 77 ~~s~~~a~~l~~~G~~v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 77 NGATKAALKLAELGFPVKEMIGGLDWWKREGYAT 110 (110)
T ss_pred chHHHHHHHHHHcCCeEEEecCCHHHHHHCCCCC
Confidence 788888888877 8899999999999999874
No 9
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.89 E-value=1.1e-22 Score=124.30 Aligned_cols=92 Identities=22% Similarity=0.376 Sum_probs=76.0
Q ss_pred eCHHHHHHhh--hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHH---HHHHHhhcCCCCeEEEEeCCCch
Q 041947 8 VGVDTAKDLL--SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEF---LTQVASVCSKEDHIIVVCNSGGR 82 (126)
Q Consensus 8 i~~~~l~~~~--~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ivvyc~~g~~ 82 (126)
|+++++.+++ +.+.+|||+|++.||..||||||+|+|+..+.. .+ .....+.++++++||+||.+|.+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~-------~~~~~~~~~~~~~~~~~~ivv~C~~G~r 73 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYF-------DFLEIEEDILDQLPDDQEVTVICAKEGS 73 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchH-------HHHHhhHHHHhhCCCCCeEEEEcCCCCc
Confidence 6789999988 356899999999999999999999999865431 11 11223345788999999999999
Q ss_pred HHHHHHHHHhc--CcceecccHHhHH
Q 041947 83 ALRACVDLRNA--HVTKLEGGYSAWV 106 (126)
Q Consensus 83 s~~~~~~l~~~--~v~~l~gG~~~w~ 106 (126)
|..++..|.+. +++.+.||+.+|.
T Consensus 74 s~~aa~~L~~~G~~~~~l~GG~~~W~ 99 (100)
T cd01523 74 SQFVAELLAERGYDVDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHHHHHcCceeEEeCCcHHhhc
Confidence 99999999888 8889999999995
No 10
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.89 E-value=2.5e-22 Score=132.69 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=81.3
Q ss_pred CCceeCHHHHHHhh-hCCcEEEecCChh----hhccc---------CCCCccccccccccccCCCCChHHHHHHHhh--c
Q 041947 4 DVASVGVDTAKDLL-SSGHRFLDVRTTE----EFNES---------HVHGALNVPYLFITQEGRVKNPEFLTQVASV--C 67 (126)
Q Consensus 4 ~~~~i~~~~l~~~~-~~~~~iiDvR~~~----e~~~g---------hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~--~ 67 (126)
.+..|+++++.+++ +++.+|||+|+.. +|..| |||||+|+|+..+..-.......+...+... .
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~~~~~~ 113 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLERATGG 113 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence 56789999999999 5678999999865 45444 9999999996322110011112355555443 2
Q ss_pred CCCCeEEEEeCCCc-hHHHHHHHHHhc---CcceecccHHhHHhCCCCC
Q 041947 68 SKEDHIIVVCNSGG-RALRACVDLRNA---HVTKLEGGYSAWVDEGVAG 112 (126)
Q Consensus 68 ~~~~~ivvyc~~g~-~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~ 112 (126)
+++++||+||.+|. +|..+++.|.++ +|++|+||+.+|+.+|+|+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 68899999999987 677777777777 8999999999999999985
No 11
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.89 E-value=1.3e-22 Score=123.02 Aligned_cols=88 Identities=24% Similarity=0.295 Sum_probs=72.4
Q ss_pred eCHHHHHHhh-hC--CcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc-CCCCeEEEEeCCCchH
Q 041947 8 VGVDTAKDLL-SS--GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC-SKEDHIIVVCNSGGRA 83 (126)
Q Consensus 8 i~~~~l~~~~-~~--~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivvyc~~g~~s 83 (126)
|+++++.+++ .. +.++||+|++.||..||||||+|+|...+ ........ .++++||+||.+|.++
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l-----------~~~~~~~~~~~~~~iv~~c~~G~rs 69 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQL-----------VQETDHFAPVRGARIVLADDDGVRA 69 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHH-----------HHHHHHhcccCCCeEEEECCCCChH
Confidence 6889999998 32 57899999999999999999999998633 22323332 2467899999999999
Q ss_pred HHHHHHHHhc--CcceecccHHhHH
Q 041947 84 LRACVDLRNA--HVTKLEGGYSAWV 106 (126)
Q Consensus 84 ~~~~~~l~~~--~v~~l~gG~~~w~ 106 (126)
..++.+|... +|++++||+.+|.
T Consensus 70 ~~aa~~L~~~G~~v~~l~GG~~~W~ 94 (95)
T cd01534 70 DMTASWLAQMGWEVYVLEGGLAAAL 94 (95)
T ss_pred HHHHHHHHHcCCEEEEecCcHHHhc
Confidence 9999999777 8889999999996
No 12
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.89 E-value=1.4e-22 Score=129.19 Aligned_cols=100 Identities=25% Similarity=0.427 Sum_probs=76.2
Q ss_pred eCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCC-------------------CCC---hHHHHHHH-
Q 041947 8 VGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGR-------------------VKN---PEFLTQVA- 64 (126)
Q Consensus 8 i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~-------------------~~~---~~~~~~~~- 64 (126)
|+++++.+++.++.+|||||++.||..||||||+|||+..+..... +.. +++...+.
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE 80 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6889999998777899999999999999999999999964321100 000 12222222
Q ss_pred hhcCCCCeEEEEeC-CCchHHHHHHHHHhc--CcceecccHHhHHh
Q 041947 65 SVCSKEDHIIVVCN-SGGRALRACVDLRNA--HVTKLEGGYSAWVD 107 (126)
Q Consensus 65 ~~~~~~~~ivvyc~-~g~~s~~~~~~l~~~--~v~~l~gG~~~w~~ 107 (126)
..++++++||+||. +|.+|..+++.|..+ +|++++||+.+|+.
T Consensus 81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~aw~~ 126 (128)
T cd01520 81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKAYRK 126 (128)
T ss_pred hccCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHHHHh
Confidence 24688999999997 688999888666666 89999999999974
No 13
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.88 E-value=3.4e-22 Score=122.40 Aligned_cols=91 Identities=29% Similarity=0.493 Sum_probs=74.8
Q ss_pred eCHHHHHHhhh-C--CcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHH
Q 041947 8 VGVDTAKDLLS-S--GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRAL 84 (126)
Q Consensus 8 i~~~~l~~~~~-~--~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~ 84 (126)
|+++++.+++. + +.+|||+|+..+|..+|||||+|+|+..+. ++...+... +++++||+||.+|.+|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~--------~~~~~~~~~-~~~~~vv~~c~~g~rs~ 72 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIP--------ERSKELDSD-NPDKDIVVLCHHGGRSM 72 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHH--------HHHHHhccc-CCCCeEEEEeCCCchHH
Confidence 78899999993 2 579999999999999999999999986442 122222211 45889999999999999
Q ss_pred HHHHHHHhc---CcceecccHHhHHh
Q 041947 85 RACVDLRNA---HVTKLEGGYSAWVD 107 (126)
Q Consensus 85 ~~~~~l~~~---~v~~l~gG~~~w~~ 107 (126)
.++.+|.+. +|+++.||+.+|.+
T Consensus 73 ~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 73 QVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred HHHHHHHHcCCccEEEecCCHHHHhh
Confidence 999999988 79999999999975
No 14
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.88 E-value=4.5e-22 Score=125.85 Aligned_cols=105 Identities=28% Similarity=0.435 Sum_probs=82.9
Q ss_pred CCCceeCHHHHHHhh-h-CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHH-H-HHhhcCCCCeEEEEeC
Q 041947 3 GDVASVGVDTAKDLL-S-SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLT-Q-VASVCSKEDHIIVVCN 78 (126)
Q Consensus 3 ~~~~~i~~~~l~~~~-~-~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ivvyc~ 78 (126)
.+...|+++++.+++ . .+.+|||+|++.+|..||||||+|+|+..+... ...+.. + ..+.++++++||+||.
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~----~~~~~~~~~~~~~~~~~~~ivv~C~ 80 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK----AAELKSLQELPLDNDKDSPIYVVCR 80 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh----hhhhhhhhhcccccCCCCcEEEECC
Confidence 456789999999988 3 578999999999999999999999999755321 001111 1 1223478899999999
Q ss_pred CCchHHHHHHHHHhc----CcceecccHHhHHhCCCC
Q 041947 79 SGGRALRACVDLRNA----HVTKLEGGYSAWVDEGVA 111 (126)
Q Consensus 79 ~g~~s~~~~~~l~~~----~v~~l~gG~~~w~~~g~~ 111 (126)
+|.++..++..|... +|+.+.||+.+|..+..+
T Consensus 81 ~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 81 RGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred CCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 999999999988887 688999999999987554
No 15
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.87 E-value=6.5e-22 Score=118.85 Aligned_cols=87 Identities=31% Similarity=0.539 Sum_probs=74.7
Q ss_pred eCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHH
Q 041947 8 VGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRAC 87 (126)
Q Consensus 8 i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~ 87 (126)
++++++.+++.++.++||+|+..+|..||||||+|+|... +..++.. ++++++||+||.+|.++..++
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~~~-----------~~~~~~~-~~~~~~vvl~c~~g~~a~~~a 68 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLDE-----------LRDRLNE-LPKDKEIIVYCAVGLRGYIAA 68 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCHHH-----------HHHHHHh-cCCCCcEEEEcCCChhHHHHH
Confidence 4788999988777899999999999999999999999853 3344433 478899999999999999988
Q ss_pred HHHHhc--CcceecccHHhHH
Q 041947 88 VDLRNA--HVTKLEGGYSAWV 106 (126)
Q Consensus 88 ~~l~~~--~v~~l~gG~~~w~ 106 (126)
..|.+. ++++++||+.+|+
T Consensus 69 ~~L~~~G~~v~~l~GG~~~w~ 89 (90)
T cd01524 69 RILTQNGFKVKNLDGGYKTYS 89 (90)
T ss_pred HHHHHCCCCEEEecCCHHHhc
Confidence 888877 7999999999996
No 16
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.87 E-value=7.9e-22 Score=124.50 Aligned_cols=102 Identities=31% Similarity=0.396 Sum_probs=81.7
Q ss_pred eCHHHHHHhh-hCCcEEEecCCh-------hhhcccCCCCcccccccccccc-----CCCCC-hHHHHHHHhh-cCCCCe
Q 041947 8 VGVDTAKDLL-SSGHRFLDVRTT-------EEFNESHVHGALNVPYLFITQE-----GRVKN-PEFLTQVASV-CSKEDH 72 (126)
Q Consensus 8 i~~~~l~~~~-~~~~~iiDvR~~-------~e~~~ghI~ga~~i~~~~~~~~-----~~~~~-~~~~~~~~~~-~~~~~~ 72 (126)
|+++++.+.+ +.+.+|||+|++ .+|..||||||+|+|+..+... +.+.+ +++.+.+... ++++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT 81 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence 6889999998 557899999999 9999999999999998766432 22323 4556655544 678999
Q ss_pred EEEEeCC-CchHHHHHHHHHhc---CcceecccHHhHHhCC
Q 041947 73 IIVVCNS-GGRALRACVDLRNA---HVTKLEGGYSAWVDEG 109 (126)
Q Consensus 73 ivvyc~~-g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~g 109 (126)
||+||++ +.++..++..|... +|++|+||+.+|..+|
T Consensus 82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 9999998 47888877777776 7999999999998764
No 17
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.87 E-value=7.2e-22 Score=121.01 Aligned_cols=98 Identities=24% Similarity=0.474 Sum_probs=74.9
Q ss_pred eCHHHHHHhh-hCCcEEEecCChhhh-cccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHH
Q 041947 8 VGVDTAKDLL-SSGHRFLDVRTTEEF-NESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALR 85 (126)
Q Consensus 8 i~~~~l~~~~-~~~~~iiDvR~~~e~-~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~ 85 (126)
|+++++.+.+ +++.+|||+|++.+| ..||||||+|+|...+..... ....+ ....++++++|||||.+|.++..
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~-~~~~~---~~~~~~~~~~ivv~c~~g~~s~~ 76 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWAD-PDSPY---HKPAFAEDKPFVFYCASGWRSAL 76 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcC-ccccc---cccCCCCCCeEEEEcCCCCcHHH
Confidence 5789999888 467899999999998 579999999999864421100 00000 01125788999999999999998
Q ss_pred HHHHHHhc---CcceecccHHhHHhCC
Q 041947 86 ACVDLRNA---HVTKLEGGYSAWVDEG 109 (126)
Q Consensus 86 ~~~~l~~~---~v~~l~gG~~~w~~~g 109 (126)
+++.|... +|+.|+||+.+|..+|
T Consensus 77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 77 AGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 88888777 7999999999998764
No 18
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.87 E-value=1.3e-21 Score=139.48 Aligned_cols=110 Identities=16% Similarity=0.274 Sum_probs=87.0
Q ss_pred ceeCHHHHHHhh-hCCcEEEecCC----------hhhhcccCCCCccccccccccccC-----C-CCChHHHHHHHhh-c
Q 041947 6 ASVGVDTAKDLL-SSGHRFLDVRT----------TEEFNESHVHGALNVPYLFITQEG-----R-VKNPEFLTQVASV-C 67 (126)
Q Consensus 6 ~~i~~~~l~~~~-~~~~~iiDvR~----------~~e~~~ghI~ga~~i~~~~~~~~~-----~-~~~~~~~~~~~~~-~ 67 (126)
..++++++.+++ .++.+|||+|+ +.+|..||||||+|+++..+.... . ...+.|...+... +
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 358899999999 66789999996 678999999999999987554321 1 2345677777776 7
Q ss_pred CCCCeEEEEeCCCchHHHHH-HHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947 68 SKEDHIIVVCNSGGRALRAC-VDLRNA---HVTKLEGGYSAWVDEGVAGDKP 115 (126)
Q Consensus 68 ~~~~~ivvyc~~g~~s~~~~-~~l~~~---~v~~l~gG~~~w~~~g~~~~~~ 115 (126)
+++++||+||.++.+++..+ +.|... +|++|+||+.+|.++|+|++..
T Consensus 85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 136 (281)
T PRK11493 85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEG 136 (281)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCC
Confidence 89999999999877654444 445444 7999999999999999998876
No 19
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.87 E-value=9.5e-22 Score=123.57 Aligned_cols=99 Identities=25% Similarity=0.412 Sum_probs=82.3
Q ss_pred eCHHHHHHhh-h-CCcEEEecCChhhhc-ccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHH
Q 041947 8 VGVDTAKDLL-S-SGHRFLDVRTTEEFN-ESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRAL 84 (126)
Q Consensus 8 i~~~~l~~~~-~-~~~~iiDvR~~~e~~-~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~ 84 (126)
|+++++.+++ . ++.+|||+|++.+|. .||||||+|+|...+... .....+..++...++++++||+||.+|.++.
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~ 78 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI 78 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence 6889999999 4 578999999999999 999999999998765421 1123566666665678899999999999999
Q ss_pred HHHHHHHhc---CcceecccHHhHHhC
Q 041947 85 RACVDLRNA---HVTKLEGGYSAWVDE 108 (126)
Q Consensus 85 ~~~~~l~~~---~v~~l~gG~~~w~~~ 108 (126)
.++..|... +++.+.||+.+|+..
T Consensus 79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 79 AAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHHHHHCCCCeEEECcCceecCCCC
Confidence 999999888 799999999999763
No 20
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.86 E-value=1.4e-21 Score=122.63 Aligned_cols=99 Identities=28% Similarity=0.481 Sum_probs=79.2
Q ss_pred eCHHHHHHhh-hCCcEEEecCChhhhcc-----------cCCCCcccccccccccc-CCCC-ChHHHHHHHhh-cCCCCe
Q 041947 8 VGVDTAKDLL-SSGHRFLDVRTTEEFNE-----------SHVHGALNVPYLFITQE-GRVK-NPEFLTQVASV-CSKEDH 72 (126)
Q Consensus 8 i~~~~l~~~~-~~~~~iiDvR~~~e~~~-----------ghI~ga~~i~~~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~ 72 (126)
++++++.+++ ..+.+|||+|++.+|.. ||||||+|+|+..+... +.++ .+.+...+... ++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 5788999888 45689999999999987 99999999999765432 1222 24455555554 578999
Q ss_pred EEEEeCCCchHHHHHHHHHhc---CcceecccHHhHH
Q 041947 73 IIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWV 106 (126)
Q Consensus 73 ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~ 106 (126)
||+||++|.++..++..|..+ ++++|+||+.+|.
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 999999999999988888777 7999999999996
No 21
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.86 E-value=2.2e-21 Score=117.46 Aligned_cols=88 Identities=26% Similarity=0.509 Sum_probs=75.7
Q ss_pred eeCHHHHHHhh-h-CCcEEEecCChhhhcc--cCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch
Q 041947 7 SVGVDTAKDLL-S-SGHRFLDVRTTEEFNE--SHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR 82 (126)
Q Consensus 7 ~i~~~~l~~~~-~-~~~~iiDvR~~~e~~~--ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~ 82 (126)
.|+++++.+++ + .+.+|||+|++.+|.. ||||||+|+|+.. +..++.. ++++++|||||.+|.+
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~-----------~~~~~~~-~~~~~~ivv~c~~g~~ 68 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDS-----------LDDWLGD-LDRDRPVVVYCYHGNS 68 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHH-----------HHHHHhh-cCCCCCEEEEeCCCCh
Confidence 37889999988 3 5689999999999999 9999999999963 3344433 4789999999999999
Q ss_pred HHHHHHHHHhc---CcceecccHHhHH
Q 041947 83 ALRACVDLRNA---HVTKLEGGYSAWV 106 (126)
Q Consensus 83 s~~~~~~l~~~---~v~~l~gG~~~w~ 106 (126)
+..++..|... +|+++.||+.+|.
T Consensus 69 s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 69 SAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 99999999988 7999999999995
No 22
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.86 E-value=2.4e-21 Score=122.43 Aligned_cols=91 Identities=29% Similarity=0.407 Sum_probs=74.7
Q ss_pred ceeCHHHHHHhh-h------CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHh-----hcCCCCeE
Q 041947 6 ASVGVDTAKDLL-S------SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS-----VCSKEDHI 73 (126)
Q Consensus 6 ~~i~~~~l~~~~-~------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i 73 (126)
..|+++++.+++ + ++.+|||+|++.+|..||||||+|+|... .+...+.. .++++++|
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~----------~l~~~~~~~~~~~~~~~~~~v 71 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKD----------ELEEFFLDKPGVASKKKRRVL 71 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHH----------HHHHHHHHhhcccccCCCCEE
Confidence 579999999998 3 36899999999999999999999999841 12222221 14789999
Q ss_pred EEEeC-CCchHHHHHHHHHh------------c---CcceecccHHhHH
Q 041947 74 IVVCN-SGGRALRACVDLRN------------A---HVTKLEGGYSAWV 106 (126)
Q Consensus 74 vvyc~-~g~~s~~~~~~l~~------------~---~v~~l~gG~~~w~ 106 (126)
|+||. +|.||..++++|.. + +|+++.||+.+|.
T Consensus 72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 99997 99999999999997 2 8999999999984
No 23
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.86 E-value=2.1e-21 Score=119.53 Aligned_cols=97 Identities=23% Similarity=0.386 Sum_probs=73.6
Q ss_pred eCHHHHHHhh-h--CCcEEEecCChhhhcccCCCCcccccccccccc-CCCCChHHHHHHHhhcCCCCeEEEEeCCCchH
Q 041947 8 VGVDTAKDLL-S--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQE-GRVKNPEFLTQVASVCSKEDHIIVVCNSGGRA 83 (126)
Q Consensus 8 i~~~~l~~~~-~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s 83 (126)
||++++.+++ . .+.+|||+|++.+|..||||||+|+|+..+... .....-....++.. ..+++||+||.+|.++
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~~s 78 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHKHA 78 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCccH
Confidence 6889999999 3 267999999999999999999999998754321 11100000122222 2478899999999999
Q ss_pred HHHHHHHHhc---CcceecccHHhHH
Q 041947 84 LRACVDLRNA---HVTKLEGGYSAWV 106 (126)
Q Consensus 84 ~~~~~~l~~~---~v~~l~gG~~~w~ 106 (126)
..++..|... +|++++||+.+|+
T Consensus 79 ~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 79 ALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 9988888877 7999999999995
No 24
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.86 E-value=4.8e-21 Score=115.77 Aligned_cols=93 Identities=31% Similarity=0.551 Sum_probs=73.6
Q ss_pred CCcEEEecCChhhhcccCCCCccccccccccccCCCCC-hHHHHHHHhh-cCCCCeEEEEeCCCchHHHHHHHHHhc---
Q 041947 19 SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKN-PEFLTQVASV-CSKEDHIIVVCNSGGRALRACVDLRNA--- 93 (126)
Q Consensus 19 ~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~ivvyc~~g~~s~~~~~~l~~~--- 93 (126)
++.+|||+|+..+|..+|||||+|+|...+........ ..+...+... ++++++||+||.+|.++..++..|...
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 56899999999999999999999999976543322111 1233333333 578899999999999999988888888
Q ss_pred CcceecccHHhHHhCCCC
Q 041947 94 HVTKLEGGYSAWVDEGVA 111 (126)
Q Consensus 94 ~v~~l~gG~~~w~~~g~~ 111 (126)
+|++|.||+.+|..++.|
T Consensus 83 ~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 83 NVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred ceEEecCCHHHHHhcCCC
Confidence 799999999999988764
No 25
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.86 E-value=3.6e-21 Score=139.34 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=88.5
Q ss_pred CCceeCHHHHHHhh-hCCcEEEecC--------C-hhhhcccCCCCccccccccccccC------CCCChHHHHHHHhh-
Q 041947 4 DVASVGVDTAKDLL-SSGHRFLDVR--------T-TEEFNESHVHGALNVPYLFITQEG------RVKNPEFLTQVASV- 66 (126)
Q Consensus 4 ~~~~i~~~~l~~~~-~~~~~iiDvR--------~-~~e~~~ghI~ga~~i~~~~~~~~~------~~~~~~~~~~~~~~- 66 (126)
+...|++++|.+++ .++.+|||+| + ..+|..||||||+|+++..+.... ....+.|...+...
T Consensus 20 ~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~G 99 (320)
T PLN02723 20 NEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALG 99 (320)
T ss_pred CCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcC
Confidence 34579999999999 5678999996 3 368999999999999987654421 22336777888777
Q ss_pred cCCCCeEEEEeCCCchHHHHHHHHHh-c---CcceecccHHhHHhCCCCCCCC
Q 041947 67 CSKEDHIIVVCNSGGRALRACVDLRN-A---HVTKLEGGYSAWVDEGVAGDKP 115 (126)
Q Consensus 67 ~~~~~~ivvyc~~g~~s~~~~~~l~~-~---~v~~l~gG~~~w~~~g~~~~~~ 115 (126)
++++++|||||.+|.+++..+.|+++ + +|++|+||+.+|..+|+|+++.
T Consensus 100 i~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~ 152 (320)
T PLN02723 100 IENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS 152 (320)
T ss_pred CCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence 78899999999988766555545444 4 8999999999999999999875
No 26
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.86 E-value=3.7e-21 Score=119.19 Aligned_cols=100 Identities=28% Similarity=0.569 Sum_probs=75.7
Q ss_pred CHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCC-hHH---HHHHHhhcCCCCeEEEEeCCCchH
Q 041947 9 GVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKN-PEF---LTQVASVCSKEDHIIVVCNSGGRA 83 (126)
Q Consensus 9 ~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~ivvyc~~g~~s 83 (126)
|++|+++++ +++.+|||+|++.+|..||||||+|+|...+........ ..+ .......++.+++||+||.+|.++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~ 80 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS 80 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence 689999999 889999999999999999999999999966521111111 122 222333357888999999888887
Q ss_pred HHHHHH-----HHhc---CcceecccHHhHHhC
Q 041947 84 LRACVD-----LRNA---HVTKLEGGYSAWVDE 108 (126)
Q Consensus 84 ~~~~~~-----l~~~---~v~~l~gG~~~w~~~ 108 (126)
..++.. |... +|++|.||+.+|.++
T Consensus 81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 777666 5554 999999999999863
No 27
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.85 E-value=5e-21 Score=124.39 Aligned_cols=91 Identities=23% Similarity=0.356 Sum_probs=76.4
Q ss_pred HHHhh--hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHH
Q 041947 13 AKDLL--SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDL 90 (126)
Q Consensus 13 l~~~~--~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l 90 (126)
+.+++ +.+.+|||+|++.+|..||||||+|+|.. .+...+.. ++++++|||||.+|.++..++..|
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~-----------~l~~~l~~-l~~~~~vVv~c~~g~~a~~aa~~L 69 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRA-----------QLAQALEK-LPAAERYVLTCGSSLLARFAAADL 69 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHH-----------HHHHHHHh-cCCCCCEEEEeCCChHHHHHHHHH
Confidence 45555 34579999999999999999999999874 44444544 367789999999999999888888
Q ss_pred Hhc---CcceecccHHhHHhCCCCCCCC
Q 041947 91 RNA---HVTKLEGGYSAWVDEGVAGDKP 115 (126)
Q Consensus 91 ~~~---~v~~l~gG~~~w~~~g~~~~~~ 115 (126)
... +|+++.||+.+|..+|+|+++.
T Consensus 70 ~~~G~~~v~~L~GG~~aW~~~g~pl~~~ 97 (145)
T cd01535 70 AALTVKPVFVLEGGTAAWIAAGLPVESG 97 (145)
T ss_pred HHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence 877 8999999999999999999865
No 28
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.85 E-value=9.8e-21 Score=139.73 Aligned_cols=100 Identities=28% Similarity=0.576 Sum_probs=86.7
Q ss_pred CceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCCchH
Q 041947 5 VASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSGGRA 83 (126)
Q Consensus 5 ~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g~~s 83 (126)
+..|+++++.+.+.++.+|||+|++.||..||||||+|+|+.. +..++... .+++++||+||.+|.++
T Consensus 2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~~-----------l~~~~~~~~~~~~~~IvvyC~~G~rs 70 (376)
T PRK08762 2 IREISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRGF-----------LELRIETHLPDRDREIVLICASGTRS 70 (376)
T ss_pred CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHHH-----------HHHHHhhhcCCCCCeEEEEcCCCcHH
Confidence 5679999999999667899999999999999999999999853 33444443 36789999999999999
Q ss_pred HHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947 84 LRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP 115 (126)
Q Consensus 84 ~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~ 115 (126)
..+++.|... +|++|+||+.+|.++|+|++..
T Consensus 71 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 105 (376)
T PRK08762 71 AHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP 105 (376)
T ss_pred HHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence 9988888877 7999999999999999998866
No 29
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.84 E-value=1.1e-20 Score=146.09 Aligned_cols=110 Identities=16% Similarity=0.204 Sum_probs=88.7
Q ss_pred ceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccc-----cCCCC-ChHHHHHHHhh-cCCCCeEEEEe
Q 041947 6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQ-----EGRVK-NPEFLTQVASV-CSKEDHIIVVC 77 (126)
Q Consensus 6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~-----~~~~~-~~~~~~~~~~~-~~~~~~ivvyc 77 (126)
..|++++|.+++ +++++|||+|++.+|..||||||+|++++.+.. ...++ .+++...+... ++++++|||||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd 88 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD 88 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 468999999999 667999999999999999999999999764321 12333 35777777777 78999999999
Q ss_pred CCCc-hHHHHHHHHHhc---CcceecccHHhHHhCCCCCCCC
Q 041947 78 NSGG-RALRACVDLRNA---HVTKLEGGYSAWVDEGVAGDKP 115 (126)
Q Consensus 78 ~~g~-~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~~~~~ 115 (126)
.++. +++++++.|..+ +|++|+||+.+|..+|+|+++.
T Consensus 89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~ 130 (610)
T PRK09629 89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTD 130 (610)
T ss_pred CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccC
Confidence 9775 555655555555 8999999999999999998766
No 30
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.84 E-value=1.5e-20 Score=121.26 Aligned_cols=99 Identities=24% Similarity=0.392 Sum_probs=75.6
Q ss_pred eCHHHHHHhhh-----CCcEEEecCCh--------hhhcc------------cCCCCcccccccccccc-C----CC-CC
Q 041947 8 VGVDTAKDLLS-----SGHRFLDVRTT--------EEFNE------------SHVHGALNVPYLFITQE-G----RV-KN 56 (126)
Q Consensus 8 i~~~~l~~~~~-----~~~~iiDvR~~--------~e~~~------------ghI~ga~~i~~~~~~~~-~----~~-~~ 56 (126)
|+++++.+.++ ++++|||+|+. .+|.. ||||||+|+|+..+... + .+ ..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 57899999984 56899999987 88988 99999999998754321 1 12 22
Q ss_pred hHHHHHHHhh-cCCCCeEEEEeCC---CchHHHHHHHHHhc---CcceecccHHhHH
Q 041947 57 PEFLTQVASV-CSKEDHIIVVCNS---GGRALRACVDLRNA---HVTKLEGGYSAWV 106 (126)
Q Consensus 57 ~~~~~~~~~~-~~~~~~ivvyc~~---g~~s~~~~~~l~~~---~v~~l~gG~~~w~ 106 (126)
++|...+... ++++++||+||++ |..+..+++.|..+ +|++|+||+.+|+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 4677777776 8899999999986 45556554444434 8999999999996
No 31
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.84 E-value=1.5e-20 Score=114.17 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=66.5
Q ss_pred hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc---C
Q 041947 18 SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA---H 94 (126)
Q Consensus 18 ~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~---~ 94 (126)
.++.+|||+|++.+|..||||||+|+|+..+.. .......+. .++++++||+||.+|.++..++.+|... +
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~-----~~~~~~~~~-~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~ 83 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVL-----RSQELQALE-APGRATRYVLTCDGSLLARFAAQELLALGGKP 83 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcC-----CHHHHHHhh-cCCCCCCEEEEeCChHHHHHHHHHHHHcCCCC
Confidence 456899999999999999999999999864421 111122222 2477899999999999999999999777 8
Q ss_pred cceecccHHhHH
Q 041947 95 VTKLEGGYSAWV 106 (126)
Q Consensus 95 v~~l~gG~~~w~ 106 (126)
|++++||+.+|.
T Consensus 84 v~~l~GG~~~W~ 95 (96)
T cd01529 84 VALLDGGTSAWV 95 (96)
T ss_pred EEEeCCCHHHhc
Confidence 999999999996
No 32
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.84 E-value=1.2e-20 Score=117.72 Aligned_cols=95 Identities=24% Similarity=0.451 Sum_probs=73.3
Q ss_pred CceeCHHHHHHhh-h--CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh--cCCCCeEEEEeC-
Q 041947 5 VASVGVDTAKDLL-S--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV--CSKEDHIIVVCN- 78 (126)
Q Consensus 5 ~~~i~~~~l~~~~-~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivvyc~- 78 (126)
++.|+++++.+++ . ++.+|||+|++ +|..||||||+|+|+..+.. . ...+... .+++++||+||.
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~-------~-~~~~~~~~~~~~~~~iv~yC~~ 71 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKA-------Q-LNQLVQLLSGSKKDTVVFHCAL 71 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhh-------C-HHHHHHHHhcCCCCeEEEEeec
Confidence 4678999999998 3 45789999999 99999999999999975431 1 1222211 256789999998
Q ss_pred CCchHHHHHHHHHh----------c-CcceecccHHhHHhC
Q 041947 79 SGGRALRACVDLRN----------A-HVTKLEGGYSAWVDE 108 (126)
Q Consensus 79 ~g~~s~~~~~~l~~----------~-~v~~l~gG~~~w~~~ 108 (126)
++.++..++.++.+ . +|+++.||+.+|...
T Consensus 72 ~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 72 SQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 66788888777643 2 899999999999864
No 33
>PRK01415 hypothetical protein; Validated
Probab=99.83 E-value=2.7e-20 Score=129.64 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=82.0
Q ss_pred CceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHh--hcCCCCeEEEEeCCCc
Q 041947 5 VASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVAS--VCSKEDHIIVVCNSGG 81 (126)
Q Consensus 5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivvyc~~g~ 81 (126)
-..|+++++.+++ +++.+|||+|++.||..|||+||+|+|...+. ++..++.. .++++++|++||.+|.
T Consensus 111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~--------e~~~~~~~~~~~~k~k~Iv~yCtgGi 182 (247)
T PRK01415 111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFK--------QFPAWVQQNQELLKGKKIAMVCTGGI 182 (247)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHh--------hhHHHHhhhhhhcCCCeEEEECCCCh
Confidence 3578999999999 67899999999999999999999999986543 33333322 2468899999999999
Q ss_pred hHHHHHHHHHhc---CcceecccHHhHHhCC
Q 041947 82 RALRACVDLRNA---HVTKLEGGYSAWVDEG 109 (126)
Q Consensus 82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~g 109 (126)
||..++..|.+. +|+.+.||+.+|.++.
T Consensus 183 Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 183 RCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred HHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 999999999988 7999999999998753
No 34
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.83 E-value=8.7e-20 Score=129.28 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=95.3
Q ss_pred CCceeCHHHHHHhh-hC-----CcEEEecCCh--hhhcccCCCCccccccccccccC------CCCChHHHHHHHhh-cC
Q 041947 4 DVASVGVDTAKDLL-SS-----GHRFLDVRTT--EEFNESHVHGALNVPYLFITQEG------RVKNPEFLTQVASV-CS 68 (126)
Q Consensus 4 ~~~~i~~~~l~~~~-~~-----~~~iiDvR~~--~e~~~ghI~ga~~i~~~~~~~~~------~~~~~~~~~~~~~~-~~ 68 (126)
....|++++|.+.+ .+ +..+++++.. .+|.++|||||++++++.+.+.. +.+.++|...+... |+
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~ 88 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIR 88 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 45678999999998 44 5666666665 78999999999999998755432 33447888899888 99
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc----CcceecccHHhHHhCCCCCCCCccccc
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA----HVTKLEGGYSAWVDEGVAGDKPLEELK 120 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~----~v~~l~gG~~~w~~~g~~~~~~~~~~~ 120 (126)
++++||+|++.+...+..++|+++. +|++|+||+.+|+++|+|++..+.+..
T Consensus 89 ~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~ 144 (285)
T COG2897 89 NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPP 144 (285)
T ss_pred CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCC
Confidence 9999999999888777778888777 999999999999999999997644433
No 35
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.82 E-value=4.9e-20 Score=115.03 Aligned_cols=93 Identities=24% Similarity=0.361 Sum_probs=69.7
Q ss_pred ceeCHHHHHHhh-h------CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEe
Q 041947 6 ASVGVDTAKDLL-S------SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVC 77 (126)
Q Consensus 6 ~~i~~~~l~~~~-~------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc 77 (126)
..|+++++++++ + ++.+|||+|++ ||..||||||+|+|+..+.. .+...+... ....++||+||
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~-------~~~~~~~~~~~~~~~~iv~~C 73 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQ-------TLPQVYALFSLAGVKLAIFYC 73 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHH-------HHHHHHHHhhhcCCCEEEEEC
Confidence 578999999999 3 25799999999 99999999999999975431 111111111 13467899999
Q ss_pred CC-CchHHHHHHHHHhc---------CcceecccHHhHH
Q 041947 78 NS-GGRALRACVDLRNA---------HVTKLEGGYSAWV 106 (126)
Q Consensus 78 ~~-g~~s~~~~~~l~~~---------~v~~l~gG~~~w~ 106 (126)
.+ |.|+..++.++.+. +++++.||+.+|.
T Consensus 74 ~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 74 GSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred CCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 96 57888877776542 6788999999995
No 36
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.81 E-value=1.2e-19 Score=130.83 Aligned_cols=96 Identities=22% Similarity=0.358 Sum_probs=81.2
Q ss_pred CceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh--cCCCCeEEEEeCCCc
Q 041947 5 VASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV--CSKEDHIIVVCNSGG 81 (126)
Q Consensus 5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivvyc~~g~ 81 (126)
...|+++++.+++ .++.+|||+|++.||..||||||+|+|+..+. ++..++... ..++++||+||.+|.
T Consensus 111 ~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~--------~~~~~l~~~~~~~kdk~IvvyC~~G~ 182 (314)
T PRK00142 111 GTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR--------EFPPWVEENLDPLKDKKVVMYCTGGI 182 (314)
T ss_pred CcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhh--------hhHHHHHHhcCCCCcCeEEEECCCCc
Confidence 4578999999988 67799999999999999999999999997553 233333322 357899999999999
Q ss_pred hHHHHHHHHHhc---CcceecccHHhHHhC
Q 041947 82 RALRACVDLRNA---HVTKLEGGYSAWVDE 108 (126)
Q Consensus 82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~ 108 (126)
|+..++.+|.+. +|+.+.||+.+|.+.
T Consensus 183 Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 183 RCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 999999999988 799999999999874
No 37
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.81 E-value=1.5e-19 Score=128.79 Aligned_cols=108 Identities=26% Similarity=0.400 Sum_probs=84.9
Q ss_pred eCHHHHHHhh-hCCcEEEecCChhhhc-----------ccCCCCccccccccccccCCCC-ChHHHHHHHhh-cCCCCeE
Q 041947 8 VGVDTAKDLL-SSGHRFLDVRTTEEFN-----------ESHVHGALNVPYLFITQEGRVK-NPEFLTQVASV-CSKEDHI 73 (126)
Q Consensus 8 i~~~~l~~~~-~~~~~iiDvR~~~e~~-----------~ghI~ga~~i~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i 73 (126)
.+.+++.+.+ +++.+|||+|++.+|. .||||||+|+|+..+...+.+. .+++...+... ++++++|
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~i 234 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPI 234 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCE
Confidence 3455666555 5568999999999985 6999999999988765544433 34555555544 6788999
Q ss_pred EEEeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCCCC
Q 041947 74 IVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGDKP 115 (126)
Q Consensus 74 vvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~~~ 115 (126)
|+||++|.++..++..|..+ +|++|+||+..|.. .++|++..
T Consensus 235 i~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 235 IASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred EEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 99999999999988888766 89999999999998 78988753
No 38
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=127.37 Aligned_cols=97 Identities=27% Similarity=0.374 Sum_probs=79.8
Q ss_pred CCceeCHHHHHHhhhC-------CcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEE
Q 041947 4 DVASVGVDTAKDLLSS-------GHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHII 74 (126)
Q Consensus 4 ~~~~i~~~~l~~~~~~-------~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv 74 (126)
....|+++++.++++. +.+|||||++.||..||||||+|+|+..+. ++..++.... .++++|+
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~--------~~~~~l~~~~~~~kdk~Iv 179 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFT--------EFPEALAAHRADLAGKTVV 179 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhh--------hhHHHHHhhhhhcCCCeEE
Confidence 3468999999988822 479999999999999999999999997543 3333433321 2689999
Q ss_pred EEeCCCchHHHHHHHHHhc---CcceecccHHhHHhC
Q 041947 75 VVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDE 108 (126)
Q Consensus 75 vyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~ 108 (126)
+||.+|.|+..++.+|.+. +|+.+.||+.+|.++
T Consensus 180 vyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 180 SFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred EECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 9999999999999999988 799999999999874
No 39
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.81 E-value=1.4e-19 Score=131.01 Aligned_cols=107 Identities=17% Similarity=0.315 Sum_probs=85.4
Q ss_pred eCHHHHHHhh-hCCcEEEecCChhhh-----------cccCCCCccccccccccc-cC-CCCChHHHHHHHhh-cCCCCe
Q 041947 8 VGVDTAKDLL-SSGHRFLDVRTTEEF-----------NESHVHGALNVPYLFITQ-EG-RVKNPEFLTQVASV-CSKEDH 72 (126)
Q Consensus 8 i~~~~l~~~~-~~~~~iiDvR~~~e~-----------~~ghI~ga~~i~~~~~~~-~~-~~~~~~~~~~~~~~-~~~~~~ 72 (126)
++.+++.+.+ .++.+|||+|+..+| ..||||||+|+|+..+.+ ++ ..+.+++...+... ++++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~ 271 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP 271 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence 6788888888 557889999999888 469999999999976543 23 33445666666654 788999
Q ss_pred EEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHhC-CCCCCC
Q 041947 73 IIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDE-GVAGDK 114 (126)
Q Consensus 73 ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~-g~~~~~ 114 (126)
||+||++|.++...+..|..+ +|++|+||+..|... .+|++.
T Consensus 272 iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~ 317 (320)
T PLN02723 272 IVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT 317 (320)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence 999999999998887777766 799999999999874 567664
No 40
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.81 E-value=1.8e-19 Score=108.64 Aligned_cols=80 Identities=29% Similarity=0.431 Sum_probs=62.4
Q ss_pred hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch--HHHHHHHHHhc--
Q 041947 18 SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR--ALRACVDLRNA-- 93 (126)
Q Consensus 18 ~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~--s~~~~~~l~~~-- 93 (126)
.++++|||+|++.+|..+|||||+|+|...+.. .......+++++|||||.+|.+ +..++..|.+.
T Consensus 8 ~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~----------~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G~ 77 (92)
T cd01532 8 REEIALIDVREEDPFAQSHPLWAANLPLSRLEL----------DAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELGY 77 (92)
T ss_pred CCCeEEEECCCHHHHhhCCcccCeeCCHHHHHh----------hhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCc
Confidence 567899999999999999999999999863321 1111222358899999999876 56777777777
Q ss_pred -CcceecccHHhHHh
Q 041947 94 -HVTKLEGGYSAWVD 107 (126)
Q Consensus 94 -~v~~l~gG~~~w~~ 107 (126)
+|+++.||+.+|.+
T Consensus 78 ~~v~~l~GG~~~W~~ 92 (92)
T cd01532 78 TDVALLEGGLQGWRA 92 (92)
T ss_pred cCEEEccCCHHHHcC
Confidence 89999999999963
No 41
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.80 E-value=1.9e-19 Score=106.99 Aligned_cols=84 Identities=39% Similarity=0.632 Sum_probs=68.8
Q ss_pred HHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHH
Q 041947 13 AKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLR 91 (126)
Q Consensus 13 l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~ 91 (126)
+.+.+ .++..|||+|++.+|..+|||||+|+|+..+.. ......++++++||+||.++.++..++..|.
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~----------~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~ 71 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEE----------RAALLELDKDKPIVVYCRSGNRSARAAKLLR 71 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhh----------HHHhhccCCCCeEEEEeCCCchHHHHHHHHH
Confidence 34444 678999999999999999999999999963321 1122335789999999999999999999999
Q ss_pred hc---CcceecccHHhHH
Q 041947 92 NA---HVTKLEGGYSAWV 106 (126)
Q Consensus 92 ~~---~v~~l~gG~~~w~ 106 (126)
.. ++++|.||+.+|+
T Consensus 72 ~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 72 KAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred HhCcccEEEecCChhhcC
Confidence 88 8999999999994
No 42
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=9.3e-19 Score=108.18 Aligned_cols=87 Identities=32% Similarity=0.570 Sum_probs=73.7
Q ss_pred hCCcEEEecCChhhhcccCCCC-ccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc---
Q 041947 18 SSGHRFLDVRTTEEFNESHVHG-ALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA--- 93 (126)
Q Consensus 18 ~~~~~iiDvR~~~e~~~ghI~g-a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~--- 93 (126)
.++.+|||+|++.||..+|||| ++|+|..++........ .+.+++|||||.+|.||..++..|...
T Consensus 18 ~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~----------~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~ 87 (110)
T COG0607 18 GEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE----------LPDDDPIVVYCASGVRSAAAAAALKLAGFT 87 (110)
T ss_pred cCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc----------cCCCCeEEEEeCCCCChHHHHHHHHHcCCc
Confidence 6789999999999999999999 99999976542211100 478999999999999999999999999
Q ss_pred CcceecccHHhHHhCCCCCCC
Q 041947 94 HVTKLEGGYSAWVDEGVAGDK 114 (126)
Q Consensus 94 ~v~~l~gG~~~w~~~g~~~~~ 114 (126)
+++.+.||+.+|..++++...
T Consensus 88 ~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 88 NVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred cccccCCcHHHHHhcCCCccc
Confidence 556899999999999998764
No 43
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.1e-18 Score=123.72 Aligned_cols=109 Identities=25% Similarity=0.444 Sum_probs=88.7
Q ss_pred eeCHHHHHHhh-hCCcEEEecCChhhhcc----------cCCCCcccccccccccc-CCCCChHHHHHHHhh--cCCCCe
Q 041947 7 SVGVDTAKDLL-SSGHRFLDVRTTEEFNE----------SHVHGALNVPYLFITQE-GRVKNPEFLTQVASV--CSKEDH 72 (126)
Q Consensus 7 ~i~~~~l~~~~-~~~~~iiDvR~~~e~~~----------ghI~ga~~i~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~ 72 (126)
.++..+++..+ .....|||+|++.+|.. ||||||+|+|+..+.++ .++...+....+... ++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~ 236 (285)
T COG2897 157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKE 236 (285)
T ss_pred cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCC
Confidence 44556677766 67788999999999988 99999999999887664 456666777766633 899999
Q ss_pred EEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCCCC
Q 041947 73 IIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGDKP 115 (126)
Q Consensus 73 ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~~~ 115 (126)
||+||++|.+++.....|..+ ++.+|+|++..|.. .+.|++..
T Consensus 237 vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 237 VIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 999999999999988888877 66899999999997 45576654
No 44
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.79 E-value=5.4e-19 Score=108.29 Aligned_cols=79 Identities=25% Similarity=0.441 Sum_probs=65.2
Q ss_pred hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCCchHHHHHHHHHhc---
Q 041947 18 SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSGGRALRACVDLRNA--- 93 (126)
Q Consensus 18 ~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g~~s~~~~~~l~~~--- 93 (126)
.....+||+|++.+|..||||||+|+|... +...+.+. .+.+++||+||.+|.+|..++..|.+.
T Consensus 16 ~~~~~lIDvR~~~ef~~ghIpgAinip~~~-----------l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 16 FAAEHWIDVRIPEQYQQEHIQGAINIPLKE-----------IKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT 84 (101)
T ss_pred ccCCEEEECCCHHHHhcCCCCCCEECCHHH-----------HHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 456789999999999999999999999863 33444444 356788999999999999999999888
Q ss_pred CcceecccHHhHHhC
Q 041947 94 HVTKLEGGYSAWVDE 108 (126)
Q Consensus 94 ~v~~l~gG~~~w~~~ 108 (126)
+++.+ ||+.+|..-
T Consensus 85 ~v~~~-GG~~~~~~~ 98 (101)
T TIGR02981 85 HAENA-GGIKDIAMP 98 (101)
T ss_pred eEEec-CCHHHhhhh
Confidence 67765 999999753
No 45
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.79 E-value=9.4e-19 Score=135.54 Aligned_cols=109 Identities=14% Similarity=0.284 Sum_probs=87.3
Q ss_pred eeCHHHHHHhh-hCCcEEEecCChhhhc--------ccCCCCccccccccccc-cCCC-CChHHHHHHHhh-cCCCCeEE
Q 041947 7 SVGVDTAKDLL-SSGHRFLDVRTTEEFN--------ESHVHGALNVPYLFITQ-EGRV-KNPEFLTQVASV-CSKEDHII 74 (126)
Q Consensus 7 ~i~~~~l~~~~-~~~~~iiDvR~~~e~~--------~ghI~ga~~i~~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~iv 74 (126)
.++.+++.+.+ +++.+|||+|++.+|. .||||||+|+|+..+.+ .+.+ ..+++.+.+... ++++++||
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VV 227 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVI 227 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEE
Confidence 57789999888 6678999999999994 69999999999865433 2323 334566666555 78899999
Q ss_pred EEeCCCchHHHHHHHHHhc---CcceecccHHhHHh-CCCCCCCC
Q 041947 75 VVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVD-EGVAGDKP 115 (126)
Q Consensus 75 vyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~-~g~~~~~~ 115 (126)
+||++|.+++.++..|..+ +|++|+|||.+|.. .++|++.+
T Consensus 228 vYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 228 THCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred EECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 9999999998877777665 79999999999997 47898876
No 46
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.78 E-value=1.4e-18 Score=106.87 Aligned_cols=78 Identities=28% Similarity=0.520 Sum_probs=64.5
Q ss_pred CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEEEEeCCCchHHHHHHHHHhc---C
Q 041947 19 SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHIIVVCNSGGRALRACVDLRNA---H 94 (126)
Q Consensus 19 ~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivvyc~~g~~s~~~~~~l~~~---~ 94 (126)
.+-.|||+|++.+|..+|||||+|+|+. ++..++... .+.+++||+||.+|.+|..++..|.+. +
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAiniP~~-----------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAINIPLK-----------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccEECCHH-----------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence 4568999999999999999999999986 344555554 356788999999999999999999888 6
Q ss_pred cceecccHHhHHhC
Q 041947 95 VTKLEGGYSAWVDE 108 (126)
Q Consensus 95 v~~l~gG~~~w~~~ 108 (126)
++. .||+.+|..-
T Consensus 88 v~~-~GG~~~~~~~ 100 (104)
T PRK10287 88 AEN-AGGLKDIAMP 100 (104)
T ss_pred EEe-cCCHHHHhhh
Confidence 666 6999999753
No 47
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.77 E-value=2.1e-18 Score=127.89 Aligned_cols=98 Identities=23% Similarity=0.399 Sum_probs=81.2
Q ss_pred CCceeCHHHHHHhhh--CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCc
Q 041947 4 DVASVGVDTAKDLLS--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGG 81 (126)
Q Consensus 4 ~~~~i~~~~l~~~~~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~ 81 (126)
....|+++++.+.+. .+.+|||+|++.+|..+|||||+|+|+..+... ..+ +.++++++||+||.+|.
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~---------~~~-~~l~~d~~iVvyC~~G~ 354 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSG---------EAL-AKLPQDRTIVLYCKTGV 354 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcch---------hHH-hhCCCCCcEEEEcCCCh
Confidence 456799999999883 357899999999999999999999999754310 112 23578899999999999
Q ss_pred hHHHHHHHHHhc---CcceecccHHhHHhCCCC
Q 041947 82 RALRACVDLRNA---HVTKLEGGYSAWVDEGVA 111 (126)
Q Consensus 82 ~s~~~~~~l~~~---~v~~l~gG~~~w~~~g~~ 111 (126)
+|..++..|.+. +|+++.||+.+|.++..+
T Consensus 355 rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 355 RSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred HHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 999999999888 799999999999987544
No 48
>PRK07411 hypothetical protein; Validated
Probab=99.77 E-value=2.9e-18 Score=127.04 Aligned_cols=102 Identities=26% Similarity=0.429 Sum_probs=81.4
Q ss_pred CCceeCHHHHHHhhh---CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCC
Q 041947 4 DVASVGVDTAKDLLS---SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG 80 (126)
Q Consensus 4 ~~~~i~~~~l~~~~~---~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g 80 (126)
.+..|+++++.+++. ++.+|||+|++.||..||||||+|+|+..+.... ....+.. +.++++||+||.+|
T Consensus 280 ~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~------~~~~l~~-l~~d~~IVvyC~~G 352 (390)
T PRK07411 280 EIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGP------GVEKVKE-LLNGHRLIAHCKMG 352 (390)
T ss_pred ccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhccc------chHHHhh-cCCCCeEEEECCCC
Confidence 456799999999882 2579999999999999999999999997654321 1122222 35788999999999
Q ss_pred chHHHHHHHHHhc--CcceecccHHhHHhCCCCC
Q 041947 81 GRALRACVDLRNA--HVTKLEGGYSAWVDEGVAG 112 (126)
Q Consensus 81 ~~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~ 112 (126)
.||..++..|.++ +.+.+.||+.+|.++..|.
T Consensus 353 ~RS~~aa~~L~~~G~~~~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 353 GRSAKALGILKEAGIEGTNVKGGITAWSREVDPS 386 (390)
T ss_pred HHHHHHHHHHHHcCCCeEEecchHHHHHHhcCCC
Confidence 9999999999888 6568999999999876553
No 49
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.76 E-value=4.6e-18 Score=108.78 Aligned_cols=100 Identities=24% Similarity=0.273 Sum_probs=74.5
Q ss_pred eeCHHHHHHhhh---CCcEEEecCChhhhcccCCCCccccccccccccC----------CCCChHHHHHHHhhcCCCCeE
Q 041947 7 SVGVDTAKDLLS---SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEG----------RVKNPEFLTQVASVCSKEDHI 73 (126)
Q Consensus 7 ~i~~~~l~~~~~---~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i 73 (126)
.|+++++.+.++ ++.+|||+|+..+|..||||||+|+|+..+.... .+..++....+... ..++|
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~V 78 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRG--ESLAV 78 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcC--CCCeE
Confidence 478999999993 5789999999999999999999999997543210 12222333333332 67889
Q ss_pred EEEeCCCch---------HHHHHHHHHh---c--CcceecccHHhHHhC
Q 041947 74 IVVCNSGGR---------ALRACVDLRN---A--HVTKLEGGYSAWVDE 108 (126)
Q Consensus 74 vvyc~~g~~---------s~~~~~~l~~---~--~v~~l~gG~~~w~~~ 108 (126)
||||.++.+ +...+..|.. . +|++++||+.+|...
T Consensus 79 VvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 79 VVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 999997765 5666677776 2 899999999999764
No 50
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.75 E-value=4.2e-18 Score=124.14 Aligned_cols=106 Identities=25% Similarity=0.354 Sum_probs=78.4
Q ss_pred CHHHHHHhhhCCcEEEecCChhhhcccCCCCcccccccccccc----------C---------CCCChHHHHHHHh---h
Q 041947 9 GVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQE----------G---------RVKNPEFLTQVAS---V 66 (126)
Q Consensus 9 ~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~----------~---------~~~~~~~~~~~~~---~ 66 (126)
...++.+.+.++.+|||||++.||..||||||+|+|+...... + .+....+...+.. .
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~ 83 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWAD 83 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHh
Confidence 4567777777788999999999999999999999999543211 0 1112223332221 1
Q ss_pred c-CCCCeEEEEeC-CCchHHHHHHHHHhc--CcceecccHHhHHhCCCCCCC
Q 041947 67 C-SKEDHIIVVCN-SGGRALRACVDLRNA--HVTKLEGGYSAWVDEGVAGDK 114 (126)
Q Consensus 67 ~-~~~~~ivvyc~-~g~~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~~ 114 (126)
+ +++++||+||. +|.||..++++|... +++.+.||+.+|+..+.+...
T Consensus 84 ~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 84 FPRANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred cccCCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHHHHhhHHHHh
Confidence 2 37889999995 788999998888887 799999999999987765444
No 51
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.74 E-value=8e-18 Score=121.17 Aligned_cols=95 Identities=27% Similarity=0.429 Sum_probs=69.6
Q ss_pred CcEEEecCChhhhcccCCCCcccccccccccc---CC----------------CCChHHHHHH---HhhcCCCCeEEEEe
Q 041947 20 GHRFLDVRTTEEFNESHVHGALNVPYLFITQE---GR----------------VKNPEFLTQV---ASVCSKEDHIIVVC 77 (126)
Q Consensus 20 ~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~---~~----------------~~~~~~~~~~---~~~~~~~~~ivvyc 77 (126)
+..|||||++.||.+||||||+|+|+...... ++ +....+...+ ....+..+.||+||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 46899999999999999999999999533211 00 0111222222 22234555699999
Q ss_pred C-CCchHHHHHHHHHhc--CcceecccHHhHHhCCCCCCC
Q 041947 78 N-SGGRALRACVDLRNA--HVTKLEGGYSAWVDEGVAGDK 114 (126)
Q Consensus 78 ~-~g~~s~~~~~~l~~~--~v~~l~gG~~~w~~~g~~~~~ 114 (126)
. +|.+|..++++|... +++++.||+.+|+..+.+...
T Consensus 82 ~~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw~~~~~~~~~ 121 (311)
T TIGR03167 82 WRGGMRSGSLAWLLAQIGFRVPRLEGGYKAYRRFVIDQLE 121 (311)
T ss_pred CCCChHHHHHHHHHHHcCCCEEEecChHHHHHHhhhhhhh
Confidence 5 788999999999888 899999999999998776554
No 52
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.72 E-value=2.2e-17 Score=121.14 Aligned_cols=93 Identities=30% Similarity=0.491 Sum_probs=74.8
Q ss_pred CCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchH
Q 041947 4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRA 83 (126)
Q Consensus 4 ~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s 83 (126)
+...++++++.+. ..+.+|||+|++.+|..+|||||+|+|+..+... +....++++++||+||.+|.++
T Consensus 259 ~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~----------~~~~~~~~~~~IvvyC~~G~rS 327 (355)
T PRK05597 259 FGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLSAIREG----------ANPPSVSAGDEVVVYCAAGVRS 327 (355)
T ss_pred cccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHHHhhhc----------cccccCCCCCeEEEEcCCCHHH
Confidence 3456778888844 4567999999999999999999999999654321 1112346788999999999999
Q ss_pred HHHHHHHHhc---CcceecccHHhHHh
Q 041947 84 LRACVDLRNA---HVTKLEGGYSAWVD 107 (126)
Q Consensus 84 ~~~~~~l~~~---~v~~l~gG~~~w~~ 107 (126)
..++..|.+. +|+++.||+.+|.+
T Consensus 328 ~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 328 AQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred HHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 9999988887 78999999999975
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.64 E-value=6e-16 Score=113.99 Aligned_cols=92 Identities=23% Similarity=0.358 Sum_probs=71.2
Q ss_pred CceeCHHHHHHhh-hCCcEEEecCChhhhcccCCC---CccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCC
Q 041947 5 VASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVH---GALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG 80 (126)
Q Consensus 5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~---ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g 80 (126)
...++++++.+++ +++.+|||||++.||..|||| ||+|||+..+... ..+...+.. +++ ++|||||.+|
T Consensus 270 ~~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~-----~~~~~~l~~-~~~-~~Ivv~C~sG 342 (370)
T PRK05600 270 AARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDD-----ADILHALSP-IDG-DNVVVYCASG 342 (370)
T ss_pred hcccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcc-----hhhhhhccc-cCC-CcEEEECCCC
Confidence 3468999999988 455799999999999999998 5999999765321 011122222 233 3899999999
Q ss_pred chHHHHHHHHHhc---C-cceecccHH
Q 041947 81 GRALRACVDLRNA---H-VTKLEGGYS 103 (126)
Q Consensus 81 ~~s~~~~~~l~~~---~-v~~l~gG~~ 103 (126)
.||..++..|.+. + |+.+.||+.
T Consensus 343 ~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 343 IRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred hhHHHHHHHHHHcCCCCceEEeccccC
Confidence 9999999999988 3 799999975
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.54 E-value=1.3e-14 Score=102.30 Aligned_cols=95 Identities=22% Similarity=0.348 Sum_probs=83.7
Q ss_pred ceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCch
Q 041947 6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGR 82 (126)
Q Consensus 6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~ 82 (126)
..|+|++..+++ .++.++||+|...||+.||..||++.+...+. +|+.|+.... -.+++|+.||.+|+|
T Consensus 113 ~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFr--------efP~~v~~~~~~~~~KkVvmyCTGGIR 184 (308)
T COG1054 113 TYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFR--------EFPAWVEENLDLLKDKKVVMYCTGGIR 184 (308)
T ss_pred CccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhh--------hhHHHHHHHHHhccCCcEEEEcCCcee
Confidence 468899999999 78899999999999999999999999998765 7778777653 367899999999999
Q ss_pred HHHHHHHHHhc---CcceecccHHhHHhC
Q 041947 83 ALRACVDLRNA---HVTKLEGGYSAWVDE 108 (126)
Q Consensus 83 s~~~~~~l~~~---~v~~l~gG~~~w~~~ 108 (126)
...+..||+.. +||-|.||+-.+.++
T Consensus 185 CEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 185 CEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred ehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 99999999999 999999999776543
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.51 E-value=1.1e-13 Score=97.03 Aligned_cols=111 Identities=23% Similarity=0.303 Sum_probs=91.7
Q ss_pred ceeCHHHHHHhh-hCCcEEEecC---------ChhhhcccCCCCccccccccccccC------CCCChHHHHHHHhh-cC
Q 041947 6 ASVGVDTAKDLL-SSGHRFLDVR---------TTEEFNESHVHGALNVPYLFITQEG------RVKNPEFLTQVASV-CS 68 (126)
Q Consensus 6 ~~i~~~~l~~~~-~~~~~iiDvR---------~~~e~~~ghI~ga~~i~~~~~~~~~------~~~~~~~~~~~~~~-~~ 68 (126)
..++++++.+.+ +.+++|||+. ...||...|||||+++.++.....+ ....+.|...+..+ ++
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~ 84 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD 84 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence 357889999999 7789999984 3457888999999999998765433 34447788888888 88
Q ss_pred CCCeEEEEeC--CCchHHHHHHHHHhc----CcceecccHHhHHhCCCCCCCCc
Q 041947 69 KEDHIIVVCN--SGGRALRACVDLRNA----HVTKLEGGYSAWVDEGVAGDKPL 116 (126)
Q Consensus 69 ~~~~ivvyc~--~g~~s~~~~~~l~~~----~v~~l~gG~~~w~~~g~~~~~~~ 116 (126)
+++.+|||++ .|..++..++|+.+. +|..++||+.+|+.+|+|+.+..
T Consensus 85 n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~ 138 (286)
T KOG1529|consen 85 NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSK 138 (286)
T ss_pred CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccc
Confidence 9999999999 777777777777777 89999999999999999999773
No 56
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.4e-13 Score=98.38 Aligned_cols=100 Identities=26% Similarity=0.349 Sum_probs=75.5
Q ss_pred CCCceeCHHHHHHhh-h------CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc------CC
Q 041947 3 GDVASVGVDTAKDLL-S------SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC------SK 69 (126)
Q Consensus 3 ~~~~~i~~~~l~~~~-~------~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~ 69 (126)
..++.|+++.|+.++ + ....|||+|-+.||..|||+||+|+...+. ++.+.-.. ..
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~-----------~~~~f~~~~~~~~~~~ 221 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKEL-----------LQDFFLLKDGVPSGSK 221 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhh-----------hhhhhccccccccccC
Confidence 467899999999999 2 226799999999999999999999987532 22222111 12
Q ss_pred CCeEEEEeC-CCchHHHHHHHHHhc---------------CcceecccHHhHHhCCCCCC
Q 041947 70 EDHIIVVCN-SGGRALRACVDLRNA---------------HVTKLEGGYSAWVDEGVAGD 113 (126)
Q Consensus 70 ~~~ivvyc~-~g~~s~~~~~~l~~~---------------~v~~l~gG~~~w~~~g~~~~ 113 (126)
...+|+||. +..|+..+|..|+.. .+|+|.||+..|-..--.+.
T Consensus 222 ~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~~LC 281 (325)
T KOG3772|consen 222 RVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYPNLC 281 (325)
T ss_pred ceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhccccc
Confidence 345789997 568999999999952 89999999999987644333
No 57
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.45 E-value=1.1e-13 Score=99.36 Aligned_cols=98 Identities=27% Similarity=0.460 Sum_probs=80.7
Q ss_pred CCceeCHHHHHHhh--hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc-CCCCeEEEEeCCC
Q 041947 4 DVASVGVDTAKDLL--SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC-SKEDHIIVVCNSG 80 (126)
Q Consensus 4 ~~~~i~~~~l~~~~--~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivvyc~~g 80 (126)
+..+||..++++.+ ....++||+|+..+|+..|+|+|+|||+..+..... +.....+ ..+++|+|+|..|
T Consensus 315 ~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~-------~~~~~~~~~~~~~I~ViCrrG 387 (427)
T KOG2017|consen 315 PDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG-------KKLQGDLNTESKDIFVICRRG 387 (427)
T ss_pred hhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh-------hhhcccccccCCCEEEEeCCC
Confidence 56789999999999 467899999999999999999999999986653211 2222222 3567899999999
Q ss_pred chHHHHHHHHHhc----CcceecccHHhHHhC
Q 041947 81 GRALRACVDLRNA----HVTKLEGGYSAWVDE 108 (126)
Q Consensus 81 ~~s~~~~~~l~~~----~v~~l~gG~~~w~~~ 108 (126)
+.|+.+++.|++. .|.-+.||+.+|...
T Consensus 388 NdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 388 NDSQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred CchHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 9999999999987 787888999999875
No 58
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.43 E-value=5.4e-13 Score=101.50 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=62.1
Q ss_pred HHHHHhhhCCcEEEecCChhhhcccCCCC----ccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHH
Q 041947 11 DTAKDLLSSGHRFLDVRTTEEFNESHVHG----ALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRA 86 (126)
Q Consensus 11 ~~l~~~~~~~~~iiDvR~~~e~~~ghI~g----a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~ 86 (126)
.++.+.+.++.++||+|++.||..+|||| |+|+|+..+ ...+.. ++++++||+||.+|.+|..+
T Consensus 398 ~~~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l-----------~~~~~~-l~~~~~iivyC~~G~rS~~a 465 (482)
T PRK01269 398 VETVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKL-----------STQFGD-LDQSKTYLLYCDRGVMSRLQ 465 (482)
T ss_pred hHHHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCHHHH-----------HHHHhh-cCCCCeEEEECCCCHHHHHH
Confidence 34455556778999999999999999999 999999644 233333 47888999999999999999
Q ss_pred HHHHHhc---Ccceec
Q 041947 87 CVDLRNA---HVTKLE 99 (126)
Q Consensus 87 ~~~l~~~---~v~~l~ 99 (126)
+..|... +|++|.
T Consensus 466 a~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 466 ALYLREQGFSNVKVYR 481 (482)
T ss_pred HHHHHHcCCccEEecC
Confidence 9999887 677664
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.24 E-value=4e-11 Score=84.35 Aligned_cols=90 Identities=21% Similarity=0.430 Sum_probs=75.0
Q ss_pred hCCcEEEecCChhhhc-----------ccCCCCccccccccccccCCC-C-ChHHHHHHHhh-cCCCCeEEEEeCCCchH
Q 041947 18 SSGHRFLDVRTTEEFN-----------ESHVHGALNVPYLFITQEGRV-K-NPEFLTQVASV-CSKEDHIIVVCNSGGRA 83 (126)
Q Consensus 18 ~~~~~iiDvR~~~e~~-----------~ghI~ga~~i~~~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~ivvyc~~g~~s 83 (126)
.+++.+||.|+..+|. .||||||+|+|+.++...+.. . .+++..++... +..++++++-|+.|..+
T Consensus 170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa 249 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISA 249 (286)
T ss_pred cccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhH
Confidence 3568999999988883 589999999999987665433 2 46677777666 67799999999999999
Q ss_pred HHHHHHHHhc--CcceecccHHhHHh
Q 041947 84 LRACVDLRNA--HVTKLEGGYSAWVD 107 (126)
Q Consensus 84 ~~~~~~l~~~--~v~~l~gG~~~w~~ 107 (126)
...+..+.+. ++.+|+|++..|..
T Consensus 250 ~~i~~al~r~g~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 250 SIIALALERSGPDAKLYDGSWTEWAL 275 (286)
T ss_pred HHHHHHHHhcCCCcceecccHHHHhh
Confidence 9888888888 89999999999986
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.97 E-value=1.2e-09 Score=78.16 Aligned_cols=97 Identities=26% Similarity=0.383 Sum_probs=73.6
Q ss_pred CCCceeCHHHHHHhh----hCCc---EEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh-cCCCCeEE
Q 041947 3 GDVASVGVDTAKDLL----SSGH---RFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV-CSKEDHII 74 (126)
Q Consensus 3 ~~~~~i~~~~l~~~~----~~~~---~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv 74 (126)
.-+++|+++.|+..+ +.+. .|||+|=+.||..|||-+||||.-. .++.-.+... +.--.-+|
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~----------~~l~~~F~hkplThp~aLi 308 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST----------KKLGLLFRHKPLTHPRALI 308 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH----------HHHHHHHHhccccCceeEE
Confidence 357899999999988 3333 5999999999999999999999763 1222222222 22344588
Q ss_pred EEeC-CCchHHHHHHHHHhc---------------CcceecccHHhHHhCC
Q 041947 75 VVCN-SGGRALRACVDLRNA---------------HVTKLEGGYSAWVDEG 109 (126)
Q Consensus 75 vyc~-~g~~s~~~~~~l~~~---------------~v~~l~gG~~~w~~~g 109 (126)
+.|. +.+|+...|.+|+.+ +||++.||++++-..-
T Consensus 309 fHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~ 359 (427)
T COG5105 309 FHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNY 359 (427)
T ss_pred EEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcC
Confidence 9997 678999999999976 8999999999876553
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.83 E-value=2.8e-05 Score=55.44 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=59.8
Q ss_pred HHHHHhhhCCcEEEecCChhhhcccCCCCcccccccccc---------cc-C--------------CCCChHHHHHHHhh
Q 041947 11 DTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFIT---------QE-G--------------RVKNPEFLTQVASV 66 (126)
Q Consensus 11 ~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~---------~~-~--------------~~~~~~~~~~~~~~ 66 (126)
+.+.+++-.+..+||+|++.+|..|+.|+++|+|...-. +. + ......+..|....
T Consensus 6 q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~ 85 (334)
T COG2603 6 QDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQ 85 (334)
T ss_pred HHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444467789999999999999999999999973110 00 0 01111122222222
Q ss_pred cCCCCeEEEEeC-CCchHHHHHHHHHhc---CcceecccHHhHH
Q 041947 67 CSKEDHIIVVCN-SGGRALRACVDLRNA---HVTKLEGGYSAWV 106 (126)
Q Consensus 67 ~~~~~~ivvyc~-~g~~s~~~~~~l~~~---~v~~l~gG~~~w~ 106 (126)
.+.++-++|. +|.++...+.|+... ++--..||..+.+
T Consensus 86 --e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~~r~iGGeKalr 127 (334)
T COG2603 86 --EENPVGILCARGGLRSKIVQKWLGYAAGIDYPRVIGGEKALR 127 (334)
T ss_pred --HhCCcceeeccccchhHHHHHHHHHHHHhhhhhhhchHHHHH
Confidence 3455666685 567899999999555 5556779987654
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.24 E-value=0.002 Score=39.91 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=37.5
Q ss_pred eeCHHHHHHhh-hCCcEEEecCChhhhcccCCCC--------------ccccccccccccCCCCChHHHHHHHhhc-CCC
Q 041947 7 SVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHG--------------ALNVPYLFITQEGRVKNPEFLTQVASVC-SKE 70 (126)
Q Consensus 7 ~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~g--------------a~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 70 (126)
.++++++.++. .+=-.||+.|+..|-. +-|. -+++|+..- .+ ..+-...+...+ ...
T Consensus 14 Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~----~~-~~~~v~~f~~~l~~~~ 86 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGG----AI-TEEDVEAFADALESLP 86 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TT----T---HHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCC----CC-CHHHHHHHHHHHHhCC
Confidence 57889999888 4556999999876632 1221 245665311 11 222233333332 246
Q ss_pred CeEEEEeCCCchHHHHHHH
Q 041947 71 DHIIVVCNSGGRALRACVD 89 (126)
Q Consensus 71 ~~ivvyc~~g~~s~~~~~~ 89 (126)
++|++||.+|.|+...+..
T Consensus 87 ~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 87 KPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp TSEEEE-SCSHHHHHHHHH
T ss_pred CCEEEECCCChhHHHHHHH
Confidence 7999999999998775543
No 63
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=97.15 E-value=0.00012 Score=53.35 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=42.5
Q ss_pred CHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCC--CCeEEEE
Q 041947 9 GVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSK--EDHIIVV 76 (126)
Q Consensus 9 ~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ivvy 76 (126)
+++++.+.+.....++|+|....|+.+||+|++++|.. .+..++.++++. .++|++.
T Consensus 17 ~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~-----------~~~~~~~~l~~~~~~~~i~l~ 75 (314)
T PRK00142 17 DPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIE-----------QTEAYMAWLKADPRFADIRFK 75 (314)
T ss_pred CHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHH-----------HHHHHHHHHhhCcCCCCceEE
Confidence 36778777755678999999999999999999999985 455666666432 4555444
No 64
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=97.06 E-value=0.00013 Score=56.50 Aligned_cols=92 Identities=20% Similarity=0.302 Sum_probs=64.3
Q ss_pred CCceeCHHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhh----cCCCCeEEEEeCC
Q 041947 4 DVASVGVDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASV----CSKEDHIIVVCNS 79 (126)
Q Consensus 4 ~~~~i~~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivvyc~~ 79 (126)
-.++||++++... +...++|+|...||..+|+++++|+|+. + .+.-..++... -..++.++++..+
T Consensus 620 ~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~-~-------~ea~l~~~~~l~~~~~~~~~~~v~~~~~ 689 (725)
T KOG1093|consen 620 HCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN-N-------HEADLDWLRFLPGIVCSEGKKCVVVGKN 689 (725)
T ss_pred cCccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc-c-------hHHHHHHhhcchHhHHhhCCeEEEeccc
Confidence 3567787777665 5678999999999999999999999996 1 11222222111 1357777887776
Q ss_pred CchHHHHHHHHHhc---CcceecccHHhH
Q 041947 80 GGRALRACVDLRNA---HVTKLEGGYSAW 105 (126)
Q Consensus 80 g~~s~~~~~~l~~~---~v~~l~gG~~~w 105 (126)
...+++....+..+ .+.++.+|+.+.
T Consensus 690 ~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 690 DKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred hHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 66666666666666 777888888743
No 65
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.02 E-value=0.006 Score=39.07 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=46.1
Q ss_pred ceeCHHHHHHhh-hCCcEEEecCChhhhcccCC----------CCc--cccccccccccCCCCChHHHHHHHhhc-CCCC
Q 041947 6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHV----------HGA--LNVPYLFITQEGRVKNPEFLTQVASVC-SKED 71 (126)
Q Consensus 6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI----------~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 71 (126)
..++++++..+. -+=-.|||.|+..|-....- .|- +++|+.. ..+ .++-...+...+ ...+
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~----~~~-~~~~v~~f~~~~~~~~~ 87 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA----GDI-TPDDVETFRAAIGAAEG 87 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC----CCC-CHHHHHHHHHHHHhCCC
Confidence 456778887766 44469999999876432111 222 3455431 111 222222332222 2468
Q ss_pred eEEEEeCCCchHHHHHHHHH
Q 041947 72 HIIVVCNSGGRALRACVDLR 91 (126)
Q Consensus 72 ~ivvyc~~g~~s~~~~~~l~ 91 (126)
+|++||.+|.|+..++..+.
T Consensus 88 pvL~HC~sG~Rt~~l~al~~ 107 (135)
T TIGR01244 88 PVLAYCRSGTRSSLLWGFRQ 107 (135)
T ss_pred CEEEEcCCChHHHHHHHHHH
Confidence 89999999998777655443
No 66
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.67 E-value=0.00096 Score=47.32 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=31.7
Q ss_pred eeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccc
Q 041947 7 SVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFI 48 (126)
Q Consensus 7 ~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~ 48 (126)
.++++|+.+.+ .+++.++|+|+ ...||.+|+|+-+..+
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPal 43 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPAL 43 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHH
Confidence 46789999988 67799999999 5679999999877544
No 67
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=96.05 E-value=0.013 Score=44.67 Aligned_cols=82 Identities=21% Similarity=0.367 Sum_probs=51.8
Q ss_pred cEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc-------C-----CCCeEEEEeCCCc-----hH
Q 041947 21 HRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC-------S-----KEDHIIVVCNSGG-----RA 83 (126)
Q Consensus 21 ~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~ivvyc~~g~-----~s 83 (126)
.-|||+|+..+|..||+-.|.|.+-..+.++ ++.|+..+..++ . -+..+.+.+.+.. +-
T Consensus 327 FFiVDcRpaeqynaGHlstaFhlDc~lmlqe----P~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmGsGr~EED~Ymn 402 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAFHLDCVLMLQE----PEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMGSGRDEEDNYMN 402 (669)
T ss_pred EEEEeccchhhcccccchhhhcccHHHHhcC----HHHHHHHHHHHHHHHHHhhhccccCCcceEEEeccCcchHHHHHH
Confidence 5799999999999999999999876533222 445555443332 1 1244444443322 23
Q ss_pred HHHHHHHHhc--CcceecccHHhHH
Q 041947 84 LRACVDLRNA--HVTKLEGGYSAWV 106 (126)
Q Consensus 84 ~~~~~~l~~~--~v~~l~gG~~~w~ 106 (126)
...|.+|.+- -|.++.||+.+..
T Consensus 403 MviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 403 MVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHHHhcCceEEEEecchHHHHH
Confidence 4445555554 6779999998765
No 68
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=95.74 E-value=0.066 Score=35.22 Aligned_cols=90 Identities=11% Similarity=0.170 Sum_probs=41.7
Q ss_pred CCceeCHHHHHHhhh-CCcEEEecCChhhhccc---CCCCcc--cccccccccc-------------------------C
Q 041947 4 DVASVGVDTAKDLLS-SGHRFLDVRTTEEFNES---HVHGAL--NVPYLFITQE-------------------------G 52 (126)
Q Consensus 4 ~~~~i~~~~l~~~~~-~~~~iiDvR~~~e~~~g---hI~ga~--~i~~~~~~~~-------------------------~ 52 (126)
.+..++.++...+.. +=-.|||.|++.|.... .++|.. |+|+...... .
T Consensus 26 ~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 105 (164)
T PF13350_consen 26 NLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREM 105 (164)
T ss_dssp --TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHG
T ss_pred CcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHH
Confidence 345677777766662 33599999999997653 344543 4444211110 0
Q ss_pred CCC-ChHHHHHHHhhcCCCCeEEEEeCCC-chHHHHHHHHHhc
Q 041947 53 RVK-NPEFLTQVASVCSKEDHIIVVCNSG-GRALRACVDLRNA 93 (126)
Q Consensus 53 ~~~-~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~~~~~l~~~ 93 (126)
... .+.+...+....+...+++++|..| +|...++..++..
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~ 148 (164)
T PF13350_consen 106 LESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSL 148 (164)
T ss_dssp GGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHH
Confidence 011 2344444444444447999999876 6777777776655
No 69
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=93.47 E-value=0.35 Score=35.37 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=43.1
Q ss_pred CceeCHHHHHHhh-hCCcEEEecCChhhhcc---cCCC-Ccccccccc-ccccCCCCChHHHHHHHhhcCCCCeEEEEeC
Q 041947 5 VASVGVDTAKDLL-SSGHRFLDVRTTEEFNE---SHVH-GALNVPYLF-ITQEGRVKNPEFLTQVASVCSKEDHIIVVCN 78 (126)
Q Consensus 5 ~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~---ghI~-ga~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~ 78 (126)
...+...++.+.+ ..+..|||+|+..+|.. |||+ |.. |.+. + ...+...+.. +++.++|++-|.
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq~~f-------e~~L~~~l~~-~~~~~~i~~e~e 204 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PSQKRF-------ENALAEALRR-LDPGRPIFVEDE 204 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--CchHHH-------HHHHHHHHHh-CCCCceEEEEeC
Confidence 3456678888888 66789999999999988 8888 422 2110 0 1122233332 367788888887
Q ss_pred CC
Q 041947 79 SG 80 (126)
Q Consensus 79 ~g 80 (126)
+.
T Consensus 205 s~ 206 (311)
T TIGR03167 205 SR 206 (311)
T ss_pred ch
Confidence 65
No 70
>PLN02727 NAD kinase
Probab=91.43 E-value=0.67 Score=38.66 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=45.5
Q ss_pred ceeCHHHHHHhh-hCCcEEEecCChhhhcccCCC------------CccccccccccccCCCCChHHHHHHHhhc--CCC
Q 041947 6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVH------------GALNVPYLFITQEGRVKNPEFLTQVASVC--SKE 70 (126)
Q Consensus 6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~------------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 70 (126)
..++++++..+. .+=-.||+.|+..|- .+.-+ .-+++|+..- .....+-...+...+ ...
T Consensus 267 gQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~----~apt~EqVe~fa~~l~~slp 341 (986)
T PLN02727 267 GQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVR----TAPSAEQVEKFASLVSDSSK 341 (986)
T ss_pred CCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCC----CCCCHHHHHHHHHHHHhhcC
Confidence 357888888777 444599999997762 12111 1245655211 111223333333333 257
Q ss_pred CeEEEEeCCCchH--HHHHHHHH
Q 041947 71 DHIIVVCNSGGRA--LRACVDLR 91 (126)
Q Consensus 71 ~~ivvyc~~g~~s--~~~~~~l~ 91 (126)
++|++||.+|.++ +..+.|+.
T Consensus 342 kPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 342 KPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred CCEEEECCCCCchHHHHHHHHHH
Confidence 9999999999743 33444444
No 71
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=90.34 E-value=1.3 Score=27.73 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=38.3
Q ss_pred CCcEEEecCChhhhcccCCCC--ccccccccccccCCC-CChHHHHHHHhhcCCCCeEEEEeCCCc-hHHHH-HHHHHh
Q 041947 19 SGHRFLDVRTTEEFNESHVHG--ALNVPYLFITQEGRV-KNPEFLTQVASVCSKEDHIIVVCNSGG-RALRA-CVDLRN 92 (126)
Q Consensus 19 ~~~~iiDvR~~~e~~~ghI~g--a~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivvyc~~g~-~s~~~-~~~l~~ 92 (126)
+-..|||+++..+....+.+| -.++|+......... .-..+.+.+......+++|+|+|..|. |+... +.++..
T Consensus 27 gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~ 105 (139)
T cd00127 27 GITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMK 105 (139)
T ss_pred CCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHH
Confidence 445899999977752222222 234554322211000 001233444444456789999998884 76644 344443
No 72
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=89.90 E-value=0.82 Score=28.82 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=36.6
Q ss_pred CCcEEEecCChhhhcc-cCCCCccccccccccccCCC-CChHHHHHHHhhcCCCCeEEEEeCCC-chHHH-HHHHHHhc
Q 041947 19 SGHRFLDVRTTEEFNE-SHVHGALNVPYLFITQEGRV-KNPEFLTQVASVCSKEDHIIVVCNSG-GRALR-ACVDLRNA 93 (126)
Q Consensus 19 ~~~~iiDvR~~~e~~~-ghI~ga~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~-~~~~l~~~ 93 (126)
+=..||+++...+... ..+ .-.++|+......... .-......+......+++|+|+|..| +||.. ++.+|...
T Consensus 26 gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 26 GITHVINVTNEVPNLNKKGF-TYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred CCCEEEEccCCCCCCCCCCC-EEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 4458999987654211 111 1234554321000000 00222334444456788999999988 47665 34444443
No 73
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.36 E-value=1.7 Score=27.48 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=43.5
Q ss_pred ceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCC--------------ccccccccccccCCCCC---hHHHHHHHhhc
Q 041947 6 ASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHG--------------ALNVPYLFITQEGRVKN---PEFLTQVASVC 67 (126)
Q Consensus 6 ~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~g--------------a~~i~~~~~~~~~~~~~---~~~~~~~~~~~ 67 (126)
..++++++.+.. .+-..||--||..|=. .=|+ -.+||... ...+. +.|...+..
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPDgEe~--~QP~~~~i~~aa~~aGl~y~~iPV~~----~~iT~~dV~~f~~Al~e-- 85 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPDGEEP--GQPGFAAIAAAAEAAGLTYTHIPVTG----GGITEADVEAFQRALDE-- 85 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCCCCCC--CCCChHHHHHHHHhcCCceEEeecCC----CCCCHHHHHHHHHHHHH--
Confidence 357788888877 4556888999866531 1111 12344321 01111 233333333
Q ss_pred CCCCeEEEEeCCCchHHHHHHH
Q 041947 68 SKEDHIIVVCNSGGRALRACVD 89 (126)
Q Consensus 68 ~~~~~ivvyc~~g~~s~~~~~~ 89 (126)
.+.+++-||.+|-|+......
T Consensus 86 -aegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 86 -AEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred -hCCCEEeeecCCchHHHHHHH
Confidence 588999999999998764443
No 74
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=89.04 E-value=0.89 Score=28.37 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=35.8
Q ss_pred cEEEecCChhhh---cccCCCCccccccccccccCCC-CChHHHHHHHhhcCCCCeEEEEeCCC-chHHH-HHHHHHhc
Q 041947 21 HRFLDVRTTEEF---NESHVHGALNVPYLFITQEGRV-KNPEFLTQVASVCSKEDHIIVVCNSG-GRALR-ACVDLRNA 93 (126)
Q Consensus 21 ~~iiDvR~~~e~---~~ghI~ga~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~-~~~~l~~~ 93 (126)
..||+++...+. ....--.-.++|.......... .-......+......+.+|+|+|..| +||.. ++.+|...
T Consensus 20 ~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 98 (133)
T PF00782_consen 20 THVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKK 98 (133)
T ss_dssp EEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHH
Confidence 378899875543 2222222334554321100000 01233344444445788999999987 46554 33444443
No 75
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=88.83 E-value=1.1 Score=29.81 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=18.1
Q ss_pred HHHHhhcCCCCeEEEEeCCC-chHHHHHHHHH
Q 041947 61 TQVASVCSKEDHIIVVCNSG-GRALRACVDLR 91 (126)
Q Consensus 61 ~~~~~~~~~~~~ivvyc~~g-~~s~~~~~~l~ 91 (126)
..+...+.++++|+++|.+| .|+...|..|+
T Consensus 124 ~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLL 155 (168)
T PF05706_consen 124 EELAARLENGRKVLVHCRGGLGRTGLVAACLL 155 (168)
T ss_dssp HHHHHHHHTT--EEEE-SSSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEECCCCCCHHHHHHHHHH
Confidence 34444457899999999987 56666554444
No 76
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.90 E-value=1.6 Score=29.28 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=23.4
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCC-chHHHHHH-HHHhc
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSG-GRALRACV-DLRNA 93 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g-~~s~~~~~-~l~~~ 93 (126)
++...+...+..+++|+|.|..| +||+..+. ||...
T Consensus 93 ~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~ 130 (180)
T COG2453 93 KIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY 130 (180)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH
Confidence 44445555567788999999877 56655444 55444
No 77
>PRK12361 hypothetical protein; Provisional
Probab=81.15 E-value=4.1 Score=32.09 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=35.9
Q ss_pred hCCcEEEecCChhhhcc-cCCCC---ccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCC-chHHH-HHHHHH
Q 041947 18 SSGHRFLDVRTTEEFNE-SHVHG---ALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSG-GRALR-ACVDLR 91 (126)
Q Consensus 18 ~~~~~iiDvR~~~e~~~-ghI~g---a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g-~~s~~-~~~~l~ 91 (126)
.+-..|||++.+.+... ...++ -.++|......+....-++..+++......+++|+|+|..| .||+. ++.+|.
T Consensus 119 ~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm 198 (547)
T PRK12361 119 NKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLL 198 (547)
T ss_pred cCCCEEEEcccccccccccccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHH
Confidence 34468999995332211 11222 24566543221111001222333344445678999999877 55554 344444
No 78
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=80.56 E-value=3.3 Score=26.69 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=26.1
Q ss_pred CeEEEEeCCC-chHHHHHHHHHhc--CcceecccHHhH
Q 041947 71 DHIIVVCNSG-GRALRACVDLRNA--HVTKLEGGYSAW 105 (126)
Q Consensus 71 ~~ivvyc~~g-~~s~~~~~~l~~~--~v~~l~gG~~~w 105 (126)
++|+++|.++ .||..+..++..+ ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcCCeEEEcccccCC
Confidence 5799999755 5777777777666 677888887665
No 79
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.06 E-value=4.7 Score=27.35 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=23.2
Q ss_pred CceeCHHHHHHhhhCCcEEEecCChhh
Q 041947 5 VASVGVDTAKDLLSSGHRFLDVRTTEE 31 (126)
Q Consensus 5 ~~~i~~~~l~~~~~~~~~iiDvR~~~e 31 (126)
++.|+.+|..+.+.++.-|||+..+.|
T Consensus 5 vSPin~eEA~eAieGGAdIiDVKNP~E 31 (235)
T COG1891 5 VSPINREEAIEAIEGGADIIDVKNPAE 31 (235)
T ss_pred eccCCHHHHHHHhhCCCceEeccCccc
Confidence 456788898888888899999999887
No 80
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=78.80 E-value=2.8 Score=26.52 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=24.6
Q ss_pred EEEEeCCC-chHHHHHHHHHhc---CcceecccHHhH
Q 041947 73 IIVVCNSG-GRALRACVDLRNA---HVTKLEGGYSAW 105 (126)
Q Consensus 73 ivvyc~~g-~~s~~~~~~l~~~---~v~~l~gG~~~w 105 (126)
|+++|.++ .||..+..+++++ ++.+...|..+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 57888755 6788877777766 577888888766
No 81
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=77.01 E-value=5.4 Score=26.38 Aligned_cols=72 Identities=14% Similarity=0.265 Sum_probs=30.1
Q ss_pred EEEecCChh---h---hcccCCCCccccccccccccC-CCCChHHHHHHHhhcC-CCCeEEEEeCCC-chHHHHHHHHHh
Q 041947 22 RFLDVRTTE---E---FNESHVHGALNVPYLFITQEG-RVKNPEFLTQVASVCS-KEDHIIVVCNSG-GRALRACVDLRN 92 (126)
Q Consensus 22 ~iiDvR~~~---e---~~~ghI~ga~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~ivvyc~~g-~~s~~~~~~l~~ 92 (126)
.||.+|+.. + |.+.+=-.-++++........ ....+...+.+.-.++ ...+|+|+|..| +|.......+++
T Consensus 35 TII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk 114 (164)
T PF03162_consen 35 TIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRK 114 (164)
T ss_dssp EEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHH
Confidence 788888652 2 333332333344433221111 1122333343333333 467899999876 677777777775
Q ss_pred c
Q 041947 93 A 93 (126)
Q Consensus 93 ~ 93 (126)
.
T Consensus 115 ~ 115 (164)
T PF03162_consen 115 L 115 (164)
T ss_dssp H
T ss_pred H
Confidence 5
No 82
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=76.73 E-value=3.7 Score=29.06 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=19.5
Q ss_pred HHHHHHhhcCCCCeEEEEeCCC-chHHHHHHH
Q 041947 59 FLTQVASVCSKEDHIIVVCNSG-GRALRACVD 89 (126)
Q Consensus 59 ~~~~~~~~~~~~~~ivvyc~~g-~~s~~~~~~ 89 (126)
+...+...+..+..|+|+|..| +|+...+..
T Consensus 159 ~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~Aa 190 (241)
T PTZ00393 159 WLTIVNNVIKNNRAVAVHCVAGLGRAPVLASI 190 (241)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHHHH
Confidence 4444444456788999999876 565544433
No 83
>PRK10126 tyrosine phosphatase; Provisional
Probab=76.66 E-value=4.6 Score=26.03 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=25.6
Q ss_pred CeEEEEeCCC-chHHHHHHHHHhc--CcceecccHHhH
Q 041947 71 DHIIVVCNSG-GRALRACVDLRNA--HVTKLEGGYSAW 105 (126)
Q Consensus 71 ~~ivvyc~~g-~~s~~~~~~l~~~--~v~~l~gG~~~w 105 (126)
.+|+++|.++ .||..+..+++.+ ++.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcCCeEEEeeeccCC
Confidence 5799999765 5777777777766 677778887655
No 84
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=76.40 E-value=3.7 Score=26.41 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=25.8
Q ss_pred CeEEEEeCCC-chHHHHHHHHHhc---CcceecccHHh
Q 041947 71 DHIIVVCNSG-GRALRACVDLRNA---HVTKLEGGYSA 104 (126)
Q Consensus 71 ~~ivvyc~~g-~~s~~~~~~l~~~---~v~~l~gG~~~ 104 (126)
.+|+++|.++ .||..+..+++++ ++.+...|..+
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCC
Confidence 5799999865 5787777777766 78899888543
No 85
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=74.33 E-value=2.8 Score=31.09 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=30.3
Q ss_pred CCceeCHHHHHHhh-------hCCcEEEecCChhhhcccCCCC-ccccc
Q 041947 4 DVASVGVDTAKDLL-------SSGHRFLDVRTTEEFNESHVHG-ALNVP 44 (126)
Q Consensus 4 ~~~~i~~~~l~~~~-------~~~~~iiDvR~~~e~~~ghI~g-a~~i~ 44 (126)
....++++++.+.+ ..+..+||+|++. |...++|+ ...|-
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr~~i~ 322 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGRVLVH 322 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCCEEEE
Confidence 34578999988877 3478999999988 99888874 44443
No 86
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=73.88 E-value=6 Score=23.67 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=25.7
Q ss_pred CCeEEEEeCCCchHHHHHHHHHhc------CcceecccHHhH
Q 041947 70 EDHIIVVCNSGGRALRACVDLRNA------HVTKLEGGYSAW 105 (126)
Q Consensus 70 ~~~ivvyc~~g~~s~~~~~~l~~~------~v~~l~gG~~~w 105 (126)
.++|++.|++|..+...+..+.+. ++.+...+....
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHH
Confidence 468999999998877777777765 445555665554
No 87
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=71.91 E-value=5.6 Score=25.05 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=24.0
Q ss_pred EEEEeCCC-chHHHHHHHHHhc-------CcceecccHHhH
Q 041947 73 IIVVCNSG-GRALRACVDLRNA-------HVTKLEGGYSAW 105 (126)
Q Consensus 73 ivvyc~~g-~~s~~~~~~l~~~-------~v~~l~gG~~~w 105 (126)
|+++|.++ .||..+...++++ ++.+...|..+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 68899865 5777766666655 577888888765
No 88
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=70.74 E-value=6.8 Score=23.95 Aligned_cols=35 Identities=6% Similarity=0.050 Sum_probs=24.4
Q ss_pred CeEEEEeCCCchHHHHHHHHHhc------CcceecccHHhH
Q 041947 71 DHIIVVCNSGGRALRACVDLRNA------HVTKLEGGYSAW 105 (126)
Q Consensus 71 ~~ivvyc~~g~~s~~~~~~l~~~------~v~~l~gG~~~w 105 (126)
++|++.|++|..+...+..+.+. ++.+-..+....
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~ 42 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEG 42 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHH
Confidence 46999999998888888877665 344444555443
No 89
>KOG4053 consensus Ataxin-1, involved in Ca2+ homeostasis [Function unknown]
Probab=70.14 E-value=4.2 Score=27.77 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=47.4
Q ss_pred CCceeCHHHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCC
Q 041947 4 DVASVGVDTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNS 79 (126)
Q Consensus 4 ~~~~i~~~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~ 79 (126)
.++.|+.+++.+-. ..+.+.||...-......|.||.+-|-+.-= +-.+++.-.+..+.+..||+.+
T Consensus 51 kVEDl~TeDFirsA~~S~~lkidsstVvrI~~S~~pg~vti~F~~g---------~h~akv~levq~ehPfFVyGqG 118 (224)
T KOG4053|consen 51 KVEDLSTEDFIRSAEESDDLKIDSSTVVRIKSSGCPGSVTIIFEVG---------EHKAKVSLEVQVEHPFFVYGQG 118 (224)
T ss_pred ehhhcchHHHHHHHHhcCCeEeecceEEEeeccCCCceEEEEEEec---------cccccceeeccCCCceEEeccc
Confidence 56778888888777 5667888888877778899999998876411 1122223235678999999773
No 90
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=69.67 E-value=6.1 Score=26.12 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=17.0
Q ss_pred CCCCeEEEEeCCC-chHHHH-HHHHHh
Q 041947 68 SKEDHIIVVCNSG-GRALRA-CVDLRN 92 (126)
Q Consensus 68 ~~~~~ivvyc~~g-~~s~~~-~~~l~~ 92 (126)
..+.+|+|+|..| +|+... +.+|.+
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~ 122 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVE 122 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999877 566554 444443
No 91
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=69.43 E-value=13 Score=28.90 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=48.2
Q ss_pred ceeCHHHHHHhh----------hCCcEEEecCChh--hhcccCCCCccccccccccccCCCCChH----HHHHHHhhcCC
Q 041947 6 ASVGVDTAKDLL----------SSGHRFLDVRTTE--EFNESHVHGALNVPYLFITQEGRVKNPE----FLTQVASVCSK 69 (126)
Q Consensus 6 ~~i~~~~l~~~~----------~~~~~iiDvR~~~--e~~~ghI~ga~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~ 69 (126)
-..+.+++-..+ .++.++||+-..- ......||.+..+|-+..++...-..++ -+..+..+++-
T Consensus 218 mVkdVedlPrrI~EAFeiATSGRPGPVLVDlPKDvta~~l~~pip~~~~lPsn~~m~~~~~~~~~~v~~~i~~~a~Li~l 297 (675)
T KOG4166|consen 218 MVKDVEDLPRRIEEAFEIATSGRPGPVLVDLPKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPPEDFVMSHIEQIARLISL 297 (675)
T ss_pred eeecHHHhhHHHHHHhhhhccCCCCCeEeeCcHHHHHHHhcCCchhhhcCCchhhHhhCCCCchhhHHHHHHHHHHHHHh
Confidence 344555555544 3678999986432 3556778888888876555444333333 33455666777
Q ss_pred CCeEEEEeCCCc
Q 041947 70 EDHIIVVCNSGG 81 (126)
Q Consensus 70 ~~~ivvyc~~g~ 81 (126)
.++-|+||+.|.
T Consensus 298 aKKPVlyvG~G~ 309 (675)
T KOG4166|consen 298 AKKPVLYVGGGC 309 (675)
T ss_pred ccCceEEeCccc
Confidence 888899998773
No 92
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=68.43 E-value=8.8 Score=23.98 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=22.1
Q ss_pred CeEEEEeCCC-chHHHHHHHHHhc---CcceecccH
Q 041947 71 DHIIVVCNSG-GRALRACVDLRNA---HVTKLEGGY 102 (126)
Q Consensus 71 ~~ivvyc~~g-~~s~~~~~~l~~~---~v~~l~gG~ 102 (126)
++|+++|.++ .||..+..++..+ ++.++..|.
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~ 36 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGL 36 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 3688999754 5777777777665 466677775
No 93
>PRK13530 arsenate reductase; Provisional
Probab=68.41 E-value=8.9 Score=24.31 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=23.6
Q ss_pred CCeEEEEeCCC-chHHHHHHHHHhc---CcceecccH
Q 041947 70 EDHIIVVCNSG-GRALRACVDLRNA---HVTKLEGGY 102 (126)
Q Consensus 70 ~~~ivvyc~~g-~~s~~~~~~l~~~---~v~~l~gG~ 102 (126)
.++|+++|.++ .||..+..++..+ ++.+...|.
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 35799999765 5777777777665 566777776
No 94
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=66.88 E-value=19 Score=21.64 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccH
Q 041947 61 TQVASVCSKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGY 102 (126)
Q Consensus 61 ~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~ 102 (126)
..+....+.+.+++|||.+-.........|.+. ++..+.|+.
T Consensus 19 ~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 62 (131)
T cd00079 19 ELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDG 62 (131)
T ss_pred HHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 333333335678999999877777777777655 777777775
No 95
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=66.30 E-value=16 Score=22.11 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=25.2
Q ss_pred eEEEEeCCCchHHHHHHHHHhc------CcceecccHHhHH
Q 041947 72 HIIVVCNSGGRALRACVDLRNA------HVTKLEGGYSAWV 106 (126)
Q Consensus 72 ~ivvyc~~g~~s~~~~~~l~~~------~v~~l~gG~~~w~ 106 (126)
+|++.|++|-.|..++..+.+. ++.+...+.....
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~ 42 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHY 42 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHH
Confidence 4899999898888888888877 4555556555443
No 96
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=65.88 E-value=21 Score=23.54 Aligned_cols=38 Identities=26% Similarity=0.485 Sum_probs=24.0
Q ss_pred HHHHHhhc--CCCCeEEEEeCCC---chHHHHHHHHHhc--Ccce
Q 041947 60 LTQVASVC--SKEDHIIVVCNSG---GRALRACVDLRNA--HVTK 97 (126)
Q Consensus 60 ~~~~~~~~--~~~~~ivvyc~~g---~~s~~~~~~l~~~--~v~~ 97 (126)
..++...+ ...++|+|+|++| ..+-.++++|... +|.+
T Consensus 13 a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 13 AELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 34445555 6788999999877 4566677777666 4444
No 97
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=64.47 E-value=13 Score=21.41 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=16.0
Q ss_pred eEEEEeCCCchHHHHH-HHHHhc
Q 041947 72 HIIVVCNSGGRALRAC-VDLRNA 93 (126)
Q Consensus 72 ~ivvyc~~g~~s~~~~-~~l~~~ 93 (126)
+|++.|++|..+...+ ..+.+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~ 23 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKA 23 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHH
T ss_pred CEEEECCChHHHHHHHHHHHHHH
Confidence 4899999997666555 666655
No 98
>COG1204 Superfamily II helicase [General function prediction only]
Probab=63.96 E-value=32 Score=28.60 Aligned_cols=83 Identities=16% Similarity=0.005 Sum_probs=54.5
Q ss_pred HHHHHHhhhCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHH
Q 041947 10 VDTAKDLLSSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVD 89 (126)
Q Consensus 10 ~~~l~~~~~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~ 89 (126)
+.+++++++.....-|.|+...+......+++-..-.....................+..+..+++||.+-..+...|..
T Consensus 193 ~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~ 272 (766)
T COG1204 193 AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKK 272 (766)
T ss_pred HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHH
Confidence 57888888666567789998888776666665433221110011112344455555567888999999998888888888
Q ss_pred HHh
Q 041947 90 LRN 92 (126)
Q Consensus 90 l~~ 92 (126)
+.+
T Consensus 273 l~~ 275 (766)
T COG1204 273 LRI 275 (766)
T ss_pred HHH
Confidence 885
No 99
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=63.43 E-value=11 Score=22.53 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=23.9
Q ss_pred eEEEEeCCCchHHHHHHHHHhc------CcceecccHHhH
Q 041947 72 HIIVVCNSGGRALRACVDLRNA------HVTKLEGGYSAW 105 (126)
Q Consensus 72 ~ivvyc~~g~~s~~~~~~l~~~------~v~~l~gG~~~w 105 (126)
+|++.|++|..+...+..+.+. ++.+...++...
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHH
Confidence 4899999998888877777766 344555555544
No 100
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=63.20 E-value=41 Score=25.15 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.4
Q ss_pred HHHHHHhh-hCCcEEEecCChhhhcc
Q 041947 10 VDTAKDLL-SSGHRFLDVRTTEEFNE 34 (126)
Q Consensus 10 ~~~l~~~~-~~~~~iiDvR~~~e~~~ 34 (126)
..++...+ +.+..+||+|+..+|..
T Consensus 154 KT~iL~~L~~~~~~vlDlE~~aehrG 179 (345)
T PRK11784 154 KTELLQALANAGAQVLDLEGLANHRG 179 (345)
T ss_pred HHHHHHHHHhcCCeEEECCchhhhcc
Confidence 45666666 66788999999999864
No 101
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=63.03 E-value=21 Score=28.32 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=34.7
Q ss_pred HHHHHHHhhc-CCCCeEEEEeCCCchHHHHHHHHHhc---CcceecccHHhHHhC
Q 041947 58 EFLTQVASVC-SKEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYSAWVDE 108 (126)
Q Consensus 58 ~~~~~~~~~~-~~~~~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~~w~~~ 108 (126)
+-..|+...+ ....++||++-+-..-...+.++..+ ++..|.|++..|.+.
T Consensus 187 ~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 187 ESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHH
Confidence 4456666554 22227888887665556666666666 788999999988764
No 102
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=61.49 E-value=11 Score=23.91 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=24.3
Q ss_pred eEEEEeCCC-chHHHHHHHHHhc----CcceecccHHhH
Q 041947 72 HIIVVCNSG-GRALRACVDLRNA----HVTKLEGGYSAW 105 (126)
Q Consensus 72 ~ivvyc~~g-~~s~~~~~~l~~~----~v~~l~gG~~~w 105 (126)
+|+++|.++ .||..+..++... ++.++..|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 689999755 5777777777665 466788887553
No 103
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=60.78 E-value=32 Score=23.50 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=24.2
Q ss_pred HHHHhhcCCCCeEEEEeCCC---chHHHHHHHHHhc--Cccee
Q 041947 61 TQVASVCSKEDHIIVVCNSG---GRALRACVDLRNA--HVTKL 98 (126)
Q Consensus 61 ~~~~~~~~~~~~ivvyc~~g---~~s~~~~~~l~~~--~v~~l 98 (126)
.++...++..++|+|+|+.| ...-.++++|... .|+.+
T Consensus 36 ~~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~V~~~ 78 (205)
T TIGR00197 36 QAVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVEVFLL 78 (205)
T ss_pred HHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCEEEEE
Confidence 33333344567899999754 5667777777666 55544
No 104
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=60.37 E-value=20 Score=20.10 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=20.8
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHh
Q 041947 68 SKEDHIIVVCNSGGRALRACVDLRN 92 (126)
Q Consensus 68 ~~~~~ivvyc~~g~~s~~~~~~l~~ 92 (126)
..+++|++.|.+...+.....++.+
T Consensus 45 AgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 45 AGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EESSEEEEEESTTSHHHHHHHHHHT
T ss_pred eCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4578999999999988888877765
No 105
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=60.08 E-value=15 Score=22.42 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=18.4
Q ss_pred CeEEEEeCCCchHHHHHHHHHhc
Q 041947 71 DHIIVVCNSGGRALRACVDLRNA 93 (126)
Q Consensus 71 ~~ivvyc~~g~~s~~~~~~l~~~ 93 (126)
++|++.|+.|..+...+..+...
T Consensus 4 kkIllvC~~G~sTSll~~km~~~ 26 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQ 26 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 57999999998888877666654
No 106
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=58.57 E-value=18 Score=20.98 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=14.9
Q ss_pred CeEEEEeCCCchHHHH-HHHHHhc
Q 041947 71 DHIIVVCNSGGRALRA-CVDLRNA 93 (126)
Q Consensus 71 ~~ivvyc~~g~~s~~~-~~~l~~~ 93 (126)
++|+++|++|.-++.. +..+.+.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~ 24 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKK 24 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHH
Confidence 4689999988654443 5555544
No 107
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=57.99 E-value=12 Score=23.56 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=19.8
Q ss_pred EEEEeCCC-chHHHHHHHHHhc---CcceecccH
Q 041947 73 IIVVCNSG-GRALRACVDLRNA---HVTKLEGGY 102 (126)
Q Consensus 73 ivvyc~~g-~~s~~~~~~l~~~---~v~~l~gG~ 102 (126)
|+++|.++ .||..+..++..+ ++.++..|.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~ 34 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGI 34 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 57788654 5676666666654 566777776
No 108
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=57.51 E-value=35 Score=20.77 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=19.6
Q ss_pred CCCCeEEEEeCC--CchHHHHHHHHHhc-Ccceecc
Q 041947 68 SKEDHIIVVCNS--GGRALRACVDLRNA-HVTKLEG 100 (126)
Q Consensus 68 ~~~~~ivvyc~~--g~~s~~~~~~l~~~-~v~~l~g 100 (126)
+.++.++|+|+- |.....++..+.+. +++++.|
T Consensus 55 ~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 55 DEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISG 90 (116)
T ss_dssp CTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES
T ss_pred cCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEec
Confidence 678888888873 33344444444444 5556644
No 109
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=54.73 E-value=16 Score=20.18 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=16.5
Q ss_pred eEEEEeCCC-chHHHHHHHHHhc
Q 041947 72 HIIVVCNSG-GRALRACVDLRNA 93 (126)
Q Consensus 72 ~ivvyc~~g-~~s~~~~~~l~~~ 93 (126)
.|+++|++| ..+......+.+.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~ 23 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKA 23 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHH
Confidence 378999988 5666677777766
No 110
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=52.66 E-value=25 Score=26.71 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=33.7
Q ss_pred hHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHHh
Q 041947 57 PEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWVD 107 (126)
Q Consensus 57 ~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~~ 107 (126)
.++.+.+....+....-++||++|..+-..+-.+.+. +|-.+.|++.+|..
T Consensus 89 ~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 144 (433)
T PRK08117 89 LKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTL 144 (433)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCH
Confidence 3456666665544444688899898877766666443 67778888877653
No 111
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=47.93 E-value=64 Score=19.82 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=23.2
Q ss_pred HHHHHHHhh---cCCCCeEEEEeC--CCchHHHHHHHHHhc-Ccceecc
Q 041947 58 EFLTQVASV---CSKEDHIIVVCN--SGGRALRACVDLRNA-HVTKLEG 100 (126)
Q Consensus 58 ~~~~~~~~~---~~~~~~ivvyc~--~g~~s~~~~~~l~~~-~v~~l~g 100 (126)
++.+.+... ++.++.++|.++ +|.-...+...+.+. +++++.|
T Consensus 43 ~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~~~~~~vIsG 91 (116)
T TIGR00824 43 TLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAARIIVDKPHMDVIAG 91 (116)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhhcCCEEEEEe
Confidence 444444433 355666777775 344444444444455 7777755
No 112
>PRK06148 hypothetical protein; Provisional
Probab=47.50 E-value=33 Score=29.41 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHHh
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWVD 107 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~~ 107 (126)
++.+.+...++.+-..+++|++|..+...|-.|.+. +|-.+.||+.+|..
T Consensus 667 ~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~ 721 (1013)
T PRK06148 667 AYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTT 721 (1013)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCc
Confidence 455555555443335689999998877777766665 67788888887753
No 113
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=46.05 E-value=36 Score=26.30 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+....-++||++|..+...|-.+.+. +|-.+.||+.+|.
T Consensus 100 ~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 153 (457)
T PRK05639 100 RVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQT 153 (457)
T ss_pred HHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 355555555443323578899998877777666654 5667778887655
No 114
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.95 E-value=29 Score=19.81 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=14.5
Q ss_pred eEEEEeCCCch-HHHHHHHHHhc
Q 041947 72 HIIVVCNSGGR-ALRACVDLRNA 93 (126)
Q Consensus 72 ~ivvyc~~g~~-s~~~~~~l~~~ 93 (126)
++++.|++|.. |......+.+.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~ 23 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKV 23 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHH
Confidence 37899998864 45445566555
No 115
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=45.54 E-value=34 Score=19.63 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=15.8
Q ss_pred CeEEEEeCCCchH-HHHHHHHHhc
Q 041947 71 DHIIVVCNSGGRA-LRACVDLRNA 93 (126)
Q Consensus 71 ~~ivvyc~~g~~s-~~~~~~l~~~ 93 (126)
++|+++|.+|..+ ......+.+.
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~ 24 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKEL 24 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHH
Confidence 3689999988644 4556666555
No 116
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=44.35 E-value=39 Score=19.40 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=13.3
Q ss_pred CCCeEEEEeCCC-chHHHHH
Q 041947 69 KEDHIIVVCNSG-GRALRAC 87 (126)
Q Consensus 69 ~~~~ivvyc~~g-~~s~~~~ 87 (126)
...+|+|.|..| +|+...+
T Consensus 38 ~~~pvlVHC~~G~gRtg~~~ 57 (105)
T smart00404 38 SSGPVVVHCSAGVGRTGTFV 57 (105)
T ss_pred CCCCEEEEeCCCCChhhHHH
Confidence 367999999876 4655443
No 117
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=44.35 E-value=39 Score=19.40 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=13.3
Q ss_pred CCCeEEEEeCCC-chHHHHH
Q 041947 69 KEDHIIVVCNSG-GRALRAC 87 (126)
Q Consensus 69 ~~~~ivvyc~~g-~~s~~~~ 87 (126)
...+|+|.|..| +|+...+
T Consensus 38 ~~~pvlVHC~~G~gRtg~~~ 57 (105)
T smart00012 38 SSGPVVVHCSAGVGRTGTFV 57 (105)
T ss_pred CCCCEEEEeCCCCChhhHHH
Confidence 367999999876 4655443
No 118
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=43.45 E-value=90 Score=20.24 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=30.1
Q ss_pred HHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCchHH
Q 041947 12 TAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGRAL 84 (126)
Q Consensus 12 ~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~s~ 84 (126)
.+++.+ ..++.++|+-+ . .++..| ++...+...+ ...+.=|++|.+|.-..
T Consensus 17 ~i~~~L~~~G~eV~D~G~-~--------~~~dYp-------------d~a~~va~~V~~~e~~~GIliCGtGiG~s 70 (141)
T TIGR01118 17 VIKNFLVDNGFEVIDVTE-G--------DGQDFV-------------DVTLAVASEVQKDEQNLGIVIDAYGAGSF 70 (141)
T ss_pred HHHHHHHHCCCEEEEcCC-C--------CCCCcH-------------HHHHHHHHHHHcCCCceEEEEcCCCHhHh
Confidence 345555 67889999865 1 122222 4455555553 34566799999885433
No 119
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=42.12 E-value=68 Score=21.10 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=28.5
Q ss_pred HhhcCCCCeEEEEeCCC--chHHHHHHHHHhc------CcceecccHHhH
Q 041947 64 ASVCSKEDHIIVVCNSG--GRALRACVDLRNA------HVTKLEGGYSAW 105 (126)
Q Consensus 64 ~~~~~~~~~ivvyc~~g--~~s~~~~~~l~~~------~v~~l~gG~~~w 105 (126)
...++++..+|+.|..| ..|...|.++.+. ++..+-||-.++
T Consensus 61 l~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 61 LAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 33456677778888776 4577777777665 677777886544
No 120
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=42.08 E-value=1.1e+02 Score=20.64 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=31.5
Q ss_pred HHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCchHHH
Q 041947 12 TAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGRALR 85 (126)
Q Consensus 12 ~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~s~~ 85 (126)
.+++.| ..++.++|.-+..+ .++..| ++...+...+ ...+.-|++|.+|.-...
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~-------~~~dYp-------------d~a~~va~~V~~g~~d~GIliCGTGiG~si 73 (171)
T PRK12615 17 AVSDFLKSKGYDVIDCGTYDH-------TRTHYP-------------IFGKKVGEAVVNGQADLGVCICGTGVGINN 73 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-------CCCChH-------------HHHHHHHHHHHcCCCCEEEEEcCCcHHHHH
Confidence 345555 67889999876321 122222 4444454444 345678999999854333
No 121
>PRK06917 hypothetical protein; Provisional
Probab=41.83 E-value=48 Score=25.52 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----------CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----------HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----------~v~~l~gG~~~w~ 106 (126)
++.+.+....+....-++||++|..+..+|-.+.+. +|-.+.||+.+|.
T Consensus 78 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t 137 (447)
T PRK06917 78 KLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGIT 137 (447)
T ss_pred HHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCcc
Confidence 455566555443334688999998877766665521 5667778887654
No 122
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=41.71 E-value=1.1e+02 Score=21.16 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=24.2
Q ss_pred HHHhhcCC--CCeEEEEeCCC---chHHHHHHHHHhc--Cccee
Q 041947 62 QVASVCSK--EDHIIVVCNSG---GRALRACVDLRNA--HVTKL 98 (126)
Q Consensus 62 ~~~~~~~~--~~~ivvyc~~g---~~s~~~~~~l~~~--~v~~l 98 (126)
.+....+. ..+|+|+|+.| .-.-.+|++|... .|.++
T Consensus 39 ~i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~ 82 (203)
T COG0062 39 AILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVL 82 (203)
T ss_pred HHHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCceEEE
Confidence 33444444 56799999755 5677778888877 55543
No 123
>PRK10565 putative carbohydrate kinase; Provisional
Probab=41.57 E-value=81 Score=24.89 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=21.6
Q ss_pred cCCCCeEEEEeCCC---chHHHHHHHHHhc--Cccee
Q 041947 67 CSKEDHIIVVCNSG---GRALRACVDLRNA--HVTKL 98 (126)
Q Consensus 67 ~~~~~~ivvyc~~g---~~s~~~~~~l~~~--~v~~l 98 (126)
++..++|+|+|+.| ...-.++++|... +|.++
T Consensus 57 ~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~V~v~ 93 (508)
T PRK10565 57 YPDARHWLVLCGHGNNGGDGYVVARLAQAAGIDVTLL 93 (508)
T ss_pred cCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCceEEE
Confidence 34456799999755 4666777788766 55544
No 124
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=41.04 E-value=53 Score=25.20 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCC-eEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHHh
Q 041947 58 EFLTQVASVCSKED-HIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWVD 107 (126)
Q Consensus 58 ~~~~~~~~~~~~~~-~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~~ 107 (126)
++.+.+....+..- .-++||++|..+-.+|-.+.+. +|-.+.||+.+|..
T Consensus 101 ~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 156 (451)
T PRK06918 101 ELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTL 156 (451)
T ss_pred HHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccch
Confidence 45555555544221 3588999998877766666654 66677888877653
No 125
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=40.50 E-value=54 Score=25.29 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc--------CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA--------HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~--------~v~~l~gG~~~w~ 106 (126)
++.+.+....+..-..++||++|..+-..|-.+.+. +|-.+.|++.+|.
T Consensus 121 ~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 121 LLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 345555554443335688899998766666555443 4666777776654
No 126
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=40.46 E-value=47 Score=25.54 Aligned_cols=49 Identities=29% Similarity=0.327 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+...++....-+++|++|..+...|-.+.+. +|-.+.||+.+|.
T Consensus 97 ~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 97 LFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred HHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCC
Confidence 345555554443323578889998877777666654 5666778888775
No 127
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=40.18 E-value=48 Score=19.63 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=21.2
Q ss_pred eEEEEeCCCchH-HHHHHHHHhc------CcceecccHHhHH
Q 041947 72 HIIVVCNSGGRA-LRACVDLRNA------HVTKLEGGYSAWV 106 (126)
Q Consensus 72 ~ivvyc~~g~~s-~~~~~~l~~~------~v~~l~gG~~~w~ 106 (126)
+|++.|++|..+ ..++..+.+. ++.+....+....
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~ 45 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE 45 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHh
Confidence 699999999744 4435555554 3445555555443
No 128
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=40.16 E-value=51 Score=20.16 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=18.2
Q ss_pred CeEEEEeCCCchHHHHHHHHHhc
Q 041947 71 DHIIVVCNSGGRALRACVDLRNA 93 (126)
Q Consensus 71 ~~ivvyc~~g~~s~~~~~~l~~~ 93 (126)
++|+++|..|-.+...+..+.+.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~a 24 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKA 24 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 57999999987777777777765
No 129
>PRK07046 aminotransferase; Validated
Probab=39.01 E-value=39 Score=26.09 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhH
Q 041947 59 FLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAW 105 (126)
Q Consensus 59 ~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w 105 (126)
+.+.+...++ - .-+.+|++|..+...|-.+.+. +|-.+.||+.+|
T Consensus 120 lAe~l~~~~~-~-~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~ 169 (453)
T PRK07046 120 VGEELARRFG-L-PYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGT 169 (453)
T ss_pred HHHHHHHHhC-C-CEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCC
Confidence 4444444433 2 2478899998877766666654 577778888877
No 130
>PRK06062 hypothetical protein; Provisional
Probab=38.73 E-value=55 Score=25.24 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=32.3
Q ss_pred hHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 57 PEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 57 ~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
.++.+.+....+.+-.-|+||++|..+...|-.+.+. +|-.+.||+.+|.
T Consensus 98 ~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 98 SEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGT 152 (451)
T ss_pred HHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCC
Confidence 3455555555443223578899998877777666554 5667778887664
No 131
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=38.57 E-value=1.1e+02 Score=19.76 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=32.3
Q ss_pred HHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCchHHHHHH
Q 041947 12 TAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGRALRACV 88 (126)
Q Consensus 12 ~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~s~~~~~ 88 (126)
.+.+.+ ..++.++|+-+... .+...| ++...+...+ ...+.-|++|.+|.-...++.
T Consensus 16 ~i~~~L~~~g~eV~D~G~~~~-------~~~dy~-------------~~a~~va~~V~~~~~d~GIliCgtGiG~~iaAN 75 (140)
T PF02502_consen 16 AIKEYLEEKGYEVIDFGTYSE-------DSVDYP-------------DFAEKVAEAVASGEADRGILICGTGIGMSIAAN 75 (140)
T ss_dssp HHHHHHHHTTEEEEEESESST-------ST--HH-------------HHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEeCCCCC-------CCCCHH-------------HHHHHHHHHHHcccCCeEEEEcCCChhhhhHhh
Confidence 344445 67889999876432 122222 3444444443 345678999999965544443
No 132
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=38.23 E-value=55 Score=25.19 Aligned_cols=49 Identities=10% Similarity=0.147 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+..-.-++||++|..+...|-.+.+. .|-.+.||+.+|.
T Consensus 88 ~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 88 LLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGST 141 (443)
T ss_pred HHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcC
Confidence 455555555443323588899998877766666554 5667777776653
No 133
>PTZ00110 helicase; Provisional
Probab=38.16 E-value=85 Score=24.91 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=27.7
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 68 SKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 68 ~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
.....++|||++-..+...+..|... .+..+.|++.
T Consensus 375 ~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~ 412 (545)
T PTZ00110 375 RDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKK 412 (545)
T ss_pred ccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCc
Confidence 36778999999888888877777766 6667778763
No 134
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=38.09 E-value=83 Score=24.27 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=32.9
Q ss_pred CChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc
Q 041947 55 KNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA 93 (126)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~ 93 (126)
+..++++.+...++.+-.++++.++|..+-..+..|.+.
T Consensus 93 pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~ 131 (442)
T KOG1404|consen 93 PIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARL 131 (442)
T ss_pred cHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHH
Confidence 446888888888888888999999999988888877776
No 135
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=37.96 E-value=59 Score=23.04 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=21.0
Q ss_pred CCeEEEEeCCC---chHHHHHHHHHhc--Cccee
Q 041947 70 EDHIIVVCNSG---GRALRACVDLRNA--HVTKL 98 (126)
Q Consensus 70 ~~~ivvyc~~g---~~s~~~~~~l~~~--~v~~l 98 (126)
.++|+|+|+.| ...-.+|++|... +|.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCeEEEE
Confidence 36799999754 5677778888777 66655
No 136
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=37.20 E-value=1e+02 Score=24.05 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=20.0
Q ss_pred CeEEEEeCCC---chHHHHHHHHHhc--Cccee
Q 041947 71 DHIIVVCNSG---GRALRACVDLRNA--HVTKL 98 (126)
Q Consensus 71 ~~ivvyc~~g---~~s~~~~~~l~~~--~v~~l 98 (126)
++|+|+|+.| ..+-.+|++|... +|.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYKPSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCceEEE
Confidence 6799999765 4566778888776 55544
No 137
>PRK06149 hypothetical protein; Provisional
Probab=36.96 E-value=60 Score=27.76 Aligned_cols=49 Identities=24% Similarity=0.410 Sum_probs=33.1
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+...++.+..-+++|++|..+-..|-.+.+. +|-.+.+|+.+|.
T Consensus 628 elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 681 (972)
T PRK06149 628 EFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT 681 (972)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcC
Confidence 455555555543345688899998877766665554 6777888888765
No 138
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=36.70 E-value=46 Score=26.89 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
.+..-||||.+-..+...+.+|... ++..|.||+.
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~ 265 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLS 265 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCC
Confidence 4555799999988899999999998 7889999984
No 139
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.70 E-value=83 Score=24.31 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=28.6
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 68 SKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 68 ~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
.+++..+|||.+-..+...+..|... .+..|.||+.
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~ 261 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLE 261 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCC
Confidence 35677799999988888888888877 6778888873
No 140
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=36.58 E-value=59 Score=24.94 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCC---CeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKE---DHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~---~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+.. ..++++|++|..+...|-.+.+. +|-.+.||+.+|.
T Consensus 86 ~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 142 (442)
T TIGR00709 86 AFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMT 142 (442)
T ss_pred HHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCch
Confidence 3445555543321 35678888888877766666554 5667778776654
No 141
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.57 E-value=94 Score=20.67 Aligned_cols=47 Identities=9% Similarity=0.164 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHHh
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYSA 104 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~~ 104 (126)
++..++..++-+++-=-+.|.+...+...-..|+.. ++.+..|-|..
T Consensus 17 ~Lp~KFkklLvPgki~hilctGNlcs~e~~dylk~l~~dvhiVrGeFD~ 65 (183)
T KOG3325|consen 17 DLPAKFKKLLVPGKIQHILCTGNLCSKESYDYLKTLSSDVHIVRGEFDE 65 (183)
T ss_pred ccCHHHHhccCCCceeEEEEeCCcchHHHHHHHHhhCCCcEEEecccCc
Confidence 344555555556776678888777888888888888 99999997754
No 142
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=36.22 E-value=64 Score=24.95 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+..-.-++||++|..+..+|-.|.+. +|-.+.||+.+|.
T Consensus 117 ~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t 170 (459)
T PRK06082 117 ECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGAS 170 (459)
T ss_pred HHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcc
Confidence 455555555443224688899998887777776653 6667777776654
No 143
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=35.94 E-value=75 Score=24.42 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCC-CCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSK-EDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~-~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+. .-.-|+||++|..+...|-.+.+. +|-.+.||+.+|.
T Consensus 101 ~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 101 ELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred HHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 455555554432 123688999998877766666554 5777788887665
No 144
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=35.78 E-value=43 Score=18.64 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=21.5
Q ss_pred CceeCHHHHHHhh--hCCcEEEecCChhh
Q 041947 5 VASVGVDTAKDLL--SSGHRFLDVRTTEE 31 (126)
Q Consensus 5 ~~~i~~~~l~~~~--~~~~~iiDvR~~~e 31 (126)
...|+-+++++++ +.+..|+|..+..+
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 3467889999999 67899999987543
No 145
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=35.22 E-value=70 Score=24.61 Aligned_cols=49 Identities=10% Similarity=0.218 Sum_probs=31.8
Q ss_pred HHHHHHHhhcCCC-CeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKE-DHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~-~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+.. ..-|+||++|..+...|-.+.+. +|-.+.||+.+|.
T Consensus 89 ~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t 143 (445)
T PRK08593 89 RLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143 (445)
T ss_pred HHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 4555555554322 13588889998877766666544 5777888887764
No 146
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=35.01 E-value=2.3e+02 Score=22.61 Aligned_cols=33 Identities=18% Similarity=0.058 Sum_probs=26.0
Q ss_pred CCeEEEEeCCCchHHHHHHHHHhc--CcceecccH
Q 041947 70 EDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGY 102 (126)
Q Consensus 70 ~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~ 102 (126)
..+|+|+|.+.......+..|..+ +|..+.|+.
T Consensus 330 ~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~ 364 (543)
T KOG0342|consen 330 RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQ 364 (543)
T ss_pred CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCC
Confidence 488999999887777777777766 777887876
No 147
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=34.44 E-value=73 Score=24.50 Aligned_cols=46 Identities=20% Similarity=0.399 Sum_probs=29.0
Q ss_pred hHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc--------CcceecccHH
Q 041947 57 PEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA--------HVTKLEGGYS 103 (126)
Q Consensus 57 ~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~--------~v~~l~gG~~ 103 (126)
.++.+.+....+ ...-|++|++|-.+-.+|-.+.+. +|-...++|.
T Consensus 87 ~~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFH 140 (404)
T COG4992 87 AELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFH 140 (404)
T ss_pred HHHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcC
Confidence 345555555533 466799999997776666655544 4555556653
No 148
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=34.32 E-value=1.3e+02 Score=19.59 Aligned_cols=56 Identities=25% Similarity=0.463 Sum_probs=31.9
Q ss_pred HHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCchHHHH
Q 041947 12 TAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGRALRA 86 (126)
Q Consensus 12 ~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~s~~~ 86 (126)
.+.+.| ..+..++|+-+..+ .. + .++ +++...+...+ ...+.-|++|.+|.-...+
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~-~~-----~--~dY-----------pd~a~~va~~V~~g~~~~GIliCGtGiG~sia 75 (148)
T PRK05571 17 EIIEHLEELGHEVIDLGPDSY-DA-----S--VDY-----------PDYAKKVAEAVVAGEADRGILICGTGIGMSIA 75 (148)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-CC-----C--CCH-----------HHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHH
Confidence 344555 67889999876322 10 1 222 14455555554 3456789999998644333
No 149
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=34.28 E-value=1.4e+02 Score=19.64 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=31.2
Q ss_pred HHHHhh-h--CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCchHHHH
Q 041947 12 TAKDLL-S--SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGRALRA 86 (126)
Q Consensus 12 ~l~~~~-~--~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~s~~~ 86 (126)
.+.+.| . .+..++|+-+..+ .++ ++ +++...+...+ ...+.-|++|.+|.-...+
T Consensus 19 ~l~~~L~~~~~g~eV~D~G~~~~-------~~~--dY-----------p~~a~~va~~V~~~~~~~GIliCGtGiG~sia 78 (151)
T PTZ00215 19 EIIDYIKNKGKEYKIEDMGTYTA-------ESV--DY-----------PDFAEKVCEEVLKGEADTGILVCGSGIGISIA 78 (151)
T ss_pred HHHHHHHhccCCCEEEEcCCCCC-------CCC--CH-----------HHHHHHHHHHHhcCCCcEEEEEcCCcHHHHHH
Confidence 344555 5 6889999876321 112 22 14444454444 3456689999998544333
No 150
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=33.90 E-value=1.2e+02 Score=24.31 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=19.9
Q ss_pred CeEEEEeCCC---chHHHHHHHHHhc--Cccee
Q 041947 71 DHIIVVCNSG---GRALRACVDLRNA--HVTKL 98 (126)
Q Consensus 71 ~~ivvyc~~g---~~s~~~~~~l~~~--~v~~l 98 (126)
++|+|+|+.| .-+-.+|++|... +|.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEE
Confidence 6799999765 4566677777766 66654
No 151
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=33.89 E-value=1.5e+02 Score=19.96 Aligned_cols=56 Identities=27% Similarity=0.395 Sum_probs=32.5
Q ss_pred HHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCchHHHHH
Q 041947 12 TAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGRALRAC 87 (126)
Q Consensus 12 ~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~s~~~~ 87 (126)
.+.+.| ..+..++|+-+..+ .++..| ++...+...+ ...+.-|++|.+|.-.+.+|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~-------e~~dYp-------------d~a~~va~~V~~g~~d~GIliCGTGiG~siaA 75 (171)
T PRK08622 17 AVSDYLKSKGHEVIDVGTYDF-------TRTHYP-------------IFGKKVGEAVASGEADLGVCICGTGVGISNAV 75 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-------CCCChH-------------HHHHHHHHHHHcCCCcEEEEEcCCcHHHHHHH
Confidence 445555 67889999987431 112222 4445555544 34567899999985443333
No 152
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=33.82 E-value=1.5e+02 Score=21.32 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=43.5
Q ss_pred ccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 34 ESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 34 ~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
+..|.|-.++|.+.+.. .+=+++.+...+++-+.-|+...+...+..+.....++ .+.++.|-.+
T Consensus 135 qkeiqgff~~pvdnlra-----spfllqyiqe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k 201 (354)
T KOG1503|consen 135 QKEIQGFFSIPVDNLRA-----SPFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQK 201 (354)
T ss_pred hHhhcceeccccccccc-----CHHHHHHHHHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeecccc
Confidence 45578888999876652 23355666666877777788887766666666666555 7777766543
No 153
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=33.81 E-value=1.3e+02 Score=19.44 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=29.3
Q ss_pred HHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCch
Q 041947 12 TAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGR 82 (126)
Q Consensus 12 ~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~ 82 (126)
.+++.+ ..++.++|+-+ .+ .++ +++...+...+ ...+.=|++|.+|.-
T Consensus 17 ~l~~~L~~~g~eV~D~G~----------~~--~dy-----------pd~a~~va~~V~~~e~~~GIliCGtGiG 67 (141)
T PRK12613 17 LIKSFLQEEGYDIIDVTD----------IN--SDF-----------IDNTLAVAKAVNEAEGRLGIMVDAYGAG 67 (141)
T ss_pred HHHHHHHHCCCEEEEcCC----------CC--CCh-----------HHHHHHHHHHHHcCCCceEEEEcCCCHh
Confidence 344555 67889999975 11 222 14555555554 345667999998853
No 154
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=33.77 E-value=1.2e+02 Score=19.44 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=14.4
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCc
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGG 81 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~ 81 (126)
.|...+... +++..+++.|..|.
T Consensus 113 ~fi~~v~~~-p~~~~l~fhC~~G~ 135 (149)
T PF14566_consen 113 AFINFVKSL-PKDTWLHFHCQAGR 135 (149)
T ss_dssp HHHHHHHTS--TT-EEEEE-SSSS
T ss_pred HHHHHHHhC-CCCCeEEEECCCCC
Confidence 455555555 77889999999774
No 155
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=33.25 E-value=1.4e+02 Score=19.40 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=31.9
Q ss_pred HHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCchHHHHH
Q 041947 12 TAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGRALRAC 87 (126)
Q Consensus 12 ~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~s~~~~ 87 (126)
.+.+.+ ..++.++|+-+..+ .++..| .+...+...+ ...+.-|++|.+|.-...++
T Consensus 16 ~l~~~L~~~g~eV~D~G~~~~-------~~~dYp-------------d~a~~va~~V~~~~~~~GIliCGtGiG~siaA 74 (143)
T TIGR01120 16 EIKAFLVERGVKVIDKGTWSS-------ERTDYP-------------HYAKQVALAVAGGEVDGGILICGTGIGMSIAA 74 (143)
T ss_pred HHHHHHHHCCCEEEEeCCCCC-------CCCCHH-------------HHHHHHHHHHHCCCCceEEEEcCCcHHHHHHH
Confidence 344445 67789999876321 122222 4444444444 34567899999986444333
No 156
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=32.95 E-value=91 Score=20.44 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=25.0
Q ss_pred hhcCCCCeEEEEeCCC--chHHHHHHHHHhc------CcceecccHHhH
Q 041947 65 SVCSKEDHIIVVCNSG--GRALRACVDLRNA------HVTKLEGGYSAW 105 (126)
Q Consensus 65 ~~~~~~~~ivvyc~~g--~~s~~~~~~l~~~------~v~~l~gG~~~w 105 (126)
..++++..+|+.+..| ..|...|.++.+. ++..+-||-.++
T Consensus 62 ~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 62 KKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp CTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred hhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 3346777788888777 4567777777774 677777876543
No 157
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=32.72 E-value=73 Score=17.75 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=15.3
Q ss_pred eEEEEeCCCch-HHHHHHHHHhc
Q 041947 72 HIIVVCNSGGR-ALRACVDLRNA 93 (126)
Q Consensus 72 ~ivvyc~~g~~-s~~~~~~l~~~ 93 (126)
+++++|++|.. +...+..+.+.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~ 24 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKL 24 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHH
Confidence 58999998854 44556666665
No 158
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=32.58 E-value=1.6e+02 Score=19.83 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=31.6
Q ss_pred HHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCchHHHH
Q 041947 12 TAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGRALRA 86 (126)
Q Consensus 12 ~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~s~~~ 86 (126)
.+.+.| ..++.++|+-+... .++..| ++...+...+ ...+.-|++|.+|.-.+.+
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~-------~~~dYp-------------d~a~~va~~V~~g~~~~GIliCGTGiG~sia 74 (171)
T TIGR01119 17 EVSEFLKSKGYEVLDVGTYDF-------TRTHYP-------------IFGKKVGEAVVSGEADLGVCICGTGVGINNA 74 (171)
T ss_pred HHHHHHHHCCCEEEEeCCCCC-------CCCChH-------------HHHHHHHHHHHcCCCCEEEEEcCCcHHHHHH
Confidence 344555 67889999886421 122222 3444444444 3456789999998544333
No 159
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=32.41 E-value=77 Score=24.74 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+...++. -.-+.||++|..+...|-.+.+. +|-.+.|++.+|.
T Consensus 143 ~lAe~l~~~~p~-~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 143 VLAEMVIDAVPS-VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred HHHHHHHHhCCC-CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCc
Confidence 344444444332 23578899998877777766655 5667788888875
No 160
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=32.09 E-value=99 Score=23.45 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCC-CCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSK-EDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~-~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+. .-.-++||++|..+..+|-.+.+. +|-.+.||+.+|.
T Consensus 80 ~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 134 (420)
T TIGR00700 80 ALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRT 134 (420)
T ss_pred HHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCc
Confidence 455555555432 223578888898877777666654 5667788776653
No 161
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=31.37 E-value=96 Score=23.59 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCC-CCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSK-EDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~-~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+. +-.-++||++|..+...|-.+.+. +|-.+.||+.+|.
T Consensus 87 ~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK06777 87 TLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRT 141 (421)
T ss_pred HHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCcc
Confidence 345555544332 223467778888877766666654 5667788877664
No 162
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=31.27 E-value=85 Score=24.33 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc--------CcceecccHHhHH
Q 041947 59 FLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA--------HVTKLEGGYSAWV 106 (126)
Q Consensus 59 ~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~--------~v~~l~gG~~~w~ 106 (126)
+.+.+....+.+-.-+++|++|..+-..|-.+.+. +|-.+.||+.+|.
T Consensus 129 lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t 184 (459)
T PRK11522 129 LAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKS 184 (459)
T ss_pred HHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCc
Confidence 44555544443334678899998776666655543 3667778887764
No 163
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=31.04 E-value=1.3e+02 Score=22.82 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=28.0
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc--CcceecccH
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGY 102 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~ 102 (126)
....++|||++-..+...+..|... .+..+.|++
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~ 279 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEM 279 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCC
Confidence 4577999999988888888888777 777888887
No 164
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=30.87 E-value=87 Score=25.53 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
.+...+...+..+..++|+|.+-.++...+..|... ++..+.|++.
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~ 481 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDID 481 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCC
Confidence 444555554567888999999888888888888777 5556666543
No 165
>PRK07482 hypothetical protein; Provisional
Probab=30.68 E-value=1e+02 Score=23.86 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=30.9
Q ss_pred hHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHh----------c-CcceecccHHhHH
Q 041947 57 PEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRN----------A-HVTKLEGGYSAWV 106 (126)
Q Consensus 57 ~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~----------~-~v~~l~gG~~~w~ 106 (126)
.++.+.+....+.+-.-++||++|..+...|-.+.+ . +|-.+.||+.+|.
T Consensus 97 ~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t 157 (461)
T PRK07482 97 ITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSG 157 (461)
T ss_pred HHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCcc
Confidence 345556655544333357889989777666655553 1 5667778887764
No 166
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=30.44 E-value=1e+02 Score=22.58 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=28.0
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHhc----CcceecccHH
Q 041947 68 SKEDHIIVVCNSGGRALRACVDLRNA----HVTKLEGGYS 103 (126)
Q Consensus 68 ~~~~~ivvyc~~g~~s~~~~~~l~~~----~v~~l~gG~~ 103 (126)
..+.+++|||++-..+...+..|.+. ++..+.|++.
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFT 259 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCC
Confidence 56788999999877777777777665 4778888863
No 167
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=29.94 E-value=77 Score=21.30 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=13.0
Q ss_pred CCCCeEEEEeCCCc-hHHH
Q 041947 68 SKEDHIIVVCNSGG-RALR 85 (126)
Q Consensus 68 ~~~~~ivvyc~~g~-~s~~ 85 (126)
....+|+|+|..|. |+..
T Consensus 168 ~~~~pivVhc~~G~gRsg~ 186 (235)
T PF00102_consen 168 DPNGPIVVHCSDGVGRSGT 186 (235)
T ss_dssp TTSSEEEEESSSSSHHHHH
T ss_pred CCccceEeecccccccccc
Confidence 46789999998774 4443
No 168
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=28.75 E-value=1.1e+02 Score=23.62 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCC---CeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKE---DHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~---~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+.. ..+++++++|..+...|-.+.+. +|-.+.||+.+|.
T Consensus 105 ~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t 161 (459)
T PRK06931 105 AFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMT 161 (459)
T ss_pred HHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 4555555544322 24566668888877777666554 5667788887664
No 169
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=28.44 E-value=66 Score=21.98 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=13.9
Q ss_pred CCCeEEEEeCCC-chHHHHHH
Q 041947 69 KEDHIIVVCNSG-GRALRACV 88 (126)
Q Consensus 69 ~~~~ivvyc~~g-~~s~~~~~ 88 (126)
...+|+|+|..| +|+...+.
T Consensus 165 ~~~pivVHC~~G~gRsg~~~a 185 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTFIA 185 (231)
T ss_pred CCCCeEEECCCCCCccchHHH
Confidence 467999999876 56555433
No 170
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=27.92 E-value=1.5e+02 Score=18.91 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=19.1
Q ss_pred hHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc----CcceecccH
Q 041947 57 PEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA----HVTKLEGGY 102 (126)
Q Consensus 57 ~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~----~v~~l~gG~ 102 (126)
.+++.++... +..+-|++|..+-.........+++. -|-.|..|-
T Consensus 43 ~d~l~~~~~D-~~t~~I~ly~E~~~d~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 43 ADLLEYLAED-PDTRVIVLYLEGIGDGRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp HHHHHHHCT--SS--EEEEEES--S-HHHHHHHHHHHCCCS-EEEEE---
T ss_pred HHHHHHHhcC-CCCCEEEEEccCCCCHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3455555543 34566778877544444444444444 455666664
No 171
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=27.63 E-value=1.1e+02 Score=23.34 Aligned_cols=49 Identities=14% Similarity=0.360 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCC-CeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKE-DHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~-~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+.. ..-++||++|..+..+|-.+.+. +|-.+.||+.+|.
T Consensus 87 ~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (425)
T PRK07495 87 RLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRT 141 (425)
T ss_pred HHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCcc
Confidence 4455555544322 13578999998877766666554 6667788887764
No 172
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=27.39 E-value=1.3e+02 Score=23.07 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=27.0
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
..+.++|||++-..+...+..|... ++..+.|++.
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~ 280 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKS 280 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4467999999887777778777776 6777888763
No 173
>PRK05965 hypothetical protein; Provisional
Probab=27.29 E-value=1.3e+02 Score=23.24 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----------CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----------HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----------~v~~l~gG~~~w~ 106 (126)
++.+.+....+.+-.-++||++|..+...|-.+.+. +|-.+.+|+.+|.
T Consensus 94 ~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 94 RLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred HHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCccc
Confidence 455666555443334588899887766655554331 4667778877664
No 174
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=27.23 E-value=1.8e+02 Score=18.88 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=31.4
Q ss_pred HHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCchHHH
Q 041947 12 TAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGRALR 85 (126)
Q Consensus 12 ~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~s~~ 85 (126)
.+.+.+ ..++.++|+-+... .++ ++ +++...+...+ ...+.-|++|.+|.-...
T Consensus 15 ~l~~~L~~~g~eV~D~G~~~~-------~~~--dY-----------pd~a~~va~~V~~g~~~~GIliCGtGiG~si 71 (144)
T TIGR00689 15 EIIEHLKQKGHEVIDCGTLYD-------ERV--DY-----------PDYAKLVADKVVAGEVSLGILICGTGIGMSI 71 (144)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-------CCC--Ch-----------HHHHHHHHHHHHcCCCceEEEEcCCcHHHHH
Confidence 345555 67889999976321 112 22 14445555554 355668999999854433
No 175
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=26.96 E-value=1.3e+02 Score=22.76 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHh----------c-CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRN----------A-HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~----------~-~v~~l~gG~~~w~ 106 (126)
++.+.+....+.+-.-+++|++|..+..+|-.+.+ . +|-.+.||+.+|.
T Consensus 89 ~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t 148 (423)
T PRK05964 89 RLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDT 148 (423)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 45555555543233357888888776665555442 1 5777888887654
No 176
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=26.85 E-value=1.3e+02 Score=24.68 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
.+...+...+..+..++|+|.+-.++...+..|.+. .+..+.|++.
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~ 477 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEID 477 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCC
Confidence 455555555567888999999888888888888777 5556656543
No 177
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=26.70 E-value=1.3e+02 Score=24.26 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=28.7
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 68 SKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 68 ~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
..++..+|||++-..+...+..|... .+..|.||+.
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~ 271 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLD 271 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 35677899999888888888888777 6778888873
No 178
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=26.45 E-value=77 Score=19.51 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=13.6
Q ss_pred HHHHHHhh--hCCcEEEecCChh
Q 041947 10 VDTAKDLL--SSGHRFLDVRTTE 30 (126)
Q Consensus 10 ~~~l~~~~--~~~~~iiDvR~~~ 30 (126)
.+++.+.+ .+--+|||||...
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P 24 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWP 24 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCC
Confidence 45666656 3334999999643
No 179
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=26.15 E-value=1.4e+02 Score=23.21 Aligned_cols=68 Identities=10% Similarity=0.187 Sum_probs=40.9
Q ss_pred HHHHHhh----hCCcEEEecCChhhhcccCCCCccc-cccccccccCCCCC----hHHHHHHHhhcCCCCeEEEEeCCC
Q 041947 11 DTAKDLL----SSGHRFLDVRTTEEFNESHVHGALN-VPYLFITQEGRVKN----PEFLTQVASVCSKEDHIIVVCNSG 80 (126)
Q Consensus 11 ~~l~~~~----~~~~~iiDvR~~~e~~~ghI~ga~~-i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ivvyc~~g 80 (126)
+++...+ .+.+.|-.++.+..|..++..|.+- ++++.-.-..+..- ..+-.|+.. ++...++|+|.+|
T Consensus 41 ~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~--d~~nVvvvHCk~G 117 (434)
T KOG2283|consen 41 EDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLELLCPFCKSMDNWLSE--DPKNVVVVHCKAG 117 (434)
T ss_pred HHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcHHHHHHHHHCHHHHHhc--CccceEEEEccCC
Confidence 4555555 5678999999888899999888874 55543221111000 122233333 4666789999765
No 180
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=26.14 E-value=1.3e+02 Score=16.92 Aligned_cols=45 Identities=13% Similarity=0.356 Sum_probs=28.0
Q ss_pred CCcEEEecCChhhh-----cccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEE
Q 041947 19 SGHRFLDVRTTEEF-----NESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVV 76 (126)
Q Consensus 19 ~~~~iiDvR~~~e~-----~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvy 76 (126)
.++.+||+.. -| ..|.++.-+.+|- .++.+.+...+..++.+++.
T Consensus 4 ~eYqLidI~d--GflsLm~e~G~~k~DlklP~-----------~elg~~I~~~f~~gk~~~vt 53 (69)
T cd04468 4 TEYQLIDIDD--GFLSLMDDDGETREDLKLPE-----------GELGKEIREKFDEGKDVLVT 53 (69)
T ss_pred eeEEEEeecC--CeEEEEcCCCCcccCCcCCc-----------HHHHHHHHHHHhCCCcEEEE
Confidence 4577888865 33 3466666667764 35666666666666665543
No 181
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=26.14 E-value=1.1e+02 Score=23.41 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+...++ +-.-++||++|..+-..|-.+.+. +|-.+.||+.+|.
T Consensus 97 ~la~~l~~~~p-~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 149 (428)
T PRK12389 97 EFAKMLKEAIP-SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHS 149 (428)
T ss_pred HHHHHHHHhCC-CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCh
Confidence 34444444433 223478899898877777666654 5667788887764
No 182
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=26.05 E-value=81 Score=20.47 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=18.8
Q ss_pred CCCCeEEEEe-C----CCchHHHHHHHHHhc---CcceecccHHh
Q 041947 68 SKEDHIIVVC-N----SGGRALRACVDLRNA---HVTKLEGGYSA 104 (126)
Q Consensus 68 ~~~~~ivvyc-~----~g~~s~~~~~~l~~~---~v~~l~gG~~~ 104 (126)
+.+.++++++ . .|......+..|+++ +...|+||-..
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 3455555555 4 256667777777777 66699998765
No 183
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=25.96 E-value=1.3e+02 Score=22.93 Aligned_cols=49 Identities=14% Similarity=0.329 Sum_probs=29.9
Q ss_pred HHHHHHHhhcC-CCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCS-KEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~-~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+ .+..-++||.+|..+...|-.+.+. +|-.+.||+.+|.
T Consensus 87 ~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK09792 87 TLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRT 141 (421)
T ss_pred HHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 45555555433 1223467777888777766666654 5667788887664
No 184
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=25.71 E-value=1.2e+02 Score=23.14 Aligned_cols=35 Identities=14% Similarity=0.350 Sum_probs=24.2
Q ss_pred eEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 72 HIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 72 ~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
.++++|++|..+-..|-.+.+. +|-.+.||+.+|.
T Consensus 104 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 143 (425)
T PRK09264 104 KVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMT 143 (425)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCcc
Confidence 4556668888777766666654 5667788887764
No 185
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=25.38 E-value=1.7e+02 Score=22.86 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=29.7
Q ss_pred HhhcCCC-CeEEEEeCCCchHHHHHHHHHhc----CcceecccHH-hHHhCCCCCC
Q 041947 64 ASVCSKE-DHIIVVCNSGGRALRACVDLRNA----HVTKLEGGYS-AWVDEGVAGD 113 (126)
Q Consensus 64 ~~~~~~~-~~ivvyc~~g~~s~~~~~~l~~~----~v~~l~gG~~-~w~~~g~~~~ 113 (126)
...++.. +-|||.+++|--+......+++. -|..|.||+. -|.+..++-.
T Consensus 110 ~e~~~t~~Dii~VaGGDGT~~eVVTGi~Rrr~~~~pv~~~P~G~~~l~~~s~l~~v 165 (535)
T KOG4435|consen 110 AEAVDTQEDIIYVAGGDGTIGEVVTGIFRRRKAQLPVGFYPGGYDNLWLKSMLPSV 165 (535)
T ss_pred HHHhccCCCeEEEecCCCcHHHhhHHHHhcccccCceeeccCccchHhhhhhchhh
Confidence 3333443 44555555554455555555554 6779999998 6877766544
No 186
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.05 E-value=1.8e+02 Score=21.96 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=27.0
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc--CcceecccH
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGY 102 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~ 102 (126)
....++|||++...+...+..|... ++..+.|++
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~ 289 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDV 289 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCC
Confidence 4567999999888877777777766 777888876
No 187
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=24.92 E-value=1e+02 Score=19.93 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=15.5
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHh
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRN 92 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~ 92 (126)
-+++|+|.|.+...+......+.+
T Consensus 121 GdDTilii~~~~~~a~~~~~~l~~ 144 (146)
T TIGR01529 121 GDDTILVICRDPETAELLMERLLE 144 (146)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHH
Confidence 456777777777666665555543
No 188
>PRK03341 arginine repressor; Provisional
Probab=24.86 E-value=1e+02 Score=20.62 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=17.6
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHh
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRN 92 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~ 92 (126)
-+++|+|.|.+...+......+.+
T Consensus 140 GDDTIlvi~~~~~~a~~l~~~i~~ 163 (168)
T PRK03341 140 GDDTVLVIARDPMTGAELAARLLR 163 (168)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHh
Confidence 467888888887777776666654
No 189
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=24.61 E-value=1.6e+02 Score=22.78 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----------CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----------HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----------~v~~l~gG~~~w~ 106 (126)
++.+.+....+..-.-++||++|..+..+|-.+.+. +|-.+.||+.+|.
T Consensus 103 ~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t 162 (460)
T PRK06916 103 LLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDT 162 (460)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCccc
Confidence 455555555443324689999997766655554431 5667778877654
No 190
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=24.34 E-value=1.8e+02 Score=23.59 Aligned_cols=34 Identities=32% Similarity=0.317 Sum_probs=28.7
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc--CcceecccH
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGY 102 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~ 102 (126)
.+.+|+||.+.-.-+...|..|.+. +++.|-||-
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k 551 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGK 551 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCc
Confidence 5788999999877777788888888 999999985
No 191
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=24.32 E-value=32 Score=22.14 Aligned_cols=10 Identities=50% Similarity=0.823 Sum_probs=7.1
Q ss_pred ccCCCCcccc
Q 041947 34 ESHVHGALNV 43 (126)
Q Consensus 34 ~ghI~ga~~i 43 (126)
.-||||+.|+
T Consensus 124 ~~H~~~~~~~ 133 (135)
T TIGR03096 124 NIHLPGSLNV 133 (135)
T ss_pred hhcCCCcccc
Confidence 3578888775
No 192
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=23.85 E-value=1.6e+02 Score=22.53 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCC-CCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 58 EFLTQVASVCSK-EDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~-~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
++.+.+....+. ...-++||++|..+...|-.+.+. +|-.+.||+.+|.
T Consensus 103 ~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 157 (443)
T PRK06058 103 AVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRT 157 (443)
T ss_pred HHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcCh
Confidence 455555554331 123577888887776666665544 5667778887665
No 193
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.69 E-value=1.9e+02 Score=22.32 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=26.7
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
....++|||++-..+......|.+. .+..+.|++.
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~ 370 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVP 370 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 4467999999887777777777766 6677878764
No 194
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=23.61 E-value=78 Score=18.81 Aligned_cols=32 Identities=31% Similarity=0.294 Sum_probs=20.2
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc--Ccceeccc
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGG 101 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG 101 (126)
.+++++|+++ |.-+...+..|.+. +|.++..-
T Consensus 6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCc
Confidence 4566666666 56666667777776 66666554
No 195
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=23.50 E-value=1.6e+02 Score=22.27 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=24.9
Q ss_pred eEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHH
Q 041947 72 HIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWV 106 (126)
Q Consensus 72 ~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~ 106 (126)
.++++|++|..+...|-.+.+. +|-.+.||+.+|.
T Consensus 100 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 139 (412)
T TIGR02407 100 KVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMT 139 (412)
T ss_pred eEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCch
Confidence 4666678898877777666654 5667778887664
No 196
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=23.44 E-value=1.5e+02 Score=20.68 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=11.9
Q ss_pred CCeEEEEeCCC-chHHH
Q 041947 70 EDHIIVVCNSG-GRALR 85 (126)
Q Consensus 70 ~~~ivvyc~~g-~~s~~ 85 (126)
..+|+|+|..| +|+..
T Consensus 193 ~~pivVHC~~G~gRsg~ 209 (258)
T smart00194 193 TGPIVVHCSAGVGRTGT 209 (258)
T ss_pred CCCEEEEeCCCCCccch
Confidence 67899999876 55544
No 197
>PRK00441 argR arginine repressor; Provisional
Probab=23.15 E-value=1.1e+02 Score=19.95 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=17.5
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHh
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRN 92 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~ 92 (126)
-+++|+|.|.+...+......+..
T Consensus 123 GdDTilvi~~~~~~a~~l~~~l~~ 146 (149)
T PRK00441 123 GDNTIFVLVRSEEKAQEIVEKIKK 146 (149)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHH
Confidence 467888889887777776666554
No 198
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=23.05 E-value=1e+02 Score=23.66 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=27.9
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
....++|||++-..+...+..|... ++..+.|++.
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~ 277 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLE 277 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4567899999888888888888777 7778888774
No 199
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.03 E-value=1.1e+02 Score=24.58 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=28.5
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 68 SKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 68 ~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
.....++|||++-..+...+..|.+. ++..+.|++.
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~ 292 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVP 292 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 35678999999988888888888777 7778888753
No 200
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=22.99 E-value=2.3e+02 Score=19.69 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=28.1
Q ss_pred CChHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHh
Q 041947 55 KNPEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRN 92 (126)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~ 92 (126)
..+.|...+.......++|.+|+...+++..+...+..
T Consensus 138 d~d~f~~~~~~~~~~~~~itvy~s~~D~AL~~S~~~~~ 175 (233)
T PF05990_consen 138 DNDVFRSQLPDLGSSARRITVYYSRNDRALKASRRLNG 175 (233)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCCchHHHHHHHHhC
Confidence 34567777666555668899999999998887766653
No 201
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=22.93 E-value=95 Score=19.18 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=22.2
Q ss_pred CceeCHHHHHHhh--hCCcEEEecCChhh
Q 041947 5 VASVGVDTAKDLL--SSGHRFLDVRTTEE 31 (126)
Q Consensus 5 ~~~i~~~~l~~~~--~~~~~iiDvR~~~e 31 (126)
...|+-++++++. +.+..|+|..+..+
T Consensus 17 S~YITLedi~~lV~~g~~f~V~DakTgeD 45 (107)
T TIGR01848 17 SSYVTLEDIRDLVREGREFQVVDSKSGDD 45 (107)
T ss_pred cceeeHHHHHHHHHCCCeEEEEECCCCch
Confidence 3467889999999 78899999998654
No 202
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=22.77 E-value=1.4e+02 Score=18.61 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=22.6
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc---CcceecccHH
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA---HVTKLEGGYS 103 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~---~v~~l~gG~~ 103 (126)
.+++++|++. |..+..++..|... +|++++--..
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 4677777777 55666667777766 4777765543
No 203
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=22.69 E-value=1.5e+02 Score=19.25 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=14.7
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA 93 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~ 93 (126)
.+++||.||....+...-|..|...
T Consensus 66 ~~k~iv~yts~d~~kRaNAA~Lig~ 90 (141)
T PF14671_consen 66 KKKKIVHYTSSDPKKRANAAFLIGA 90 (141)
T ss_dssp TTSEEEEEE-S-HHHHHHHHHHHHH
T ss_pred cCCeEEEECCCChhHHHHHHHHHHH
Confidence 5788999998765554445554443
No 204
>PRK07036 hypothetical protein; Provisional
Probab=22.68 E-value=1.8e+02 Score=22.58 Aligned_cols=49 Identities=12% Similarity=0.282 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHh----------c-CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRN----------A-HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~----------~-~v~~l~gG~~~w~ 106 (126)
++.+.+....+.+-.-|+||++|..+...|-.+.+ . +|-.+.|++.+|.
T Consensus 99 ~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t 158 (466)
T PRK07036 99 ELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGST 158 (466)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCcc
Confidence 34555555443333458889998776665555532 2 5667778877765
No 205
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=22.45 E-value=1.2e+02 Score=22.24 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=32.9
Q ss_pred hHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHh------c-----CcceecccHHh
Q 041947 57 PEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRN------A-----HVTKLEGGYSA 104 (126)
Q Consensus 57 ~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~------~-----~v~~l~gG~~~ 104 (126)
.++.+.+....+..-.-+++|.+|..+-..|-.+.+ . +|-.+.|++.+
T Consensus 62 ~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG 120 (339)
T PF00202_consen 62 AELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHG 120 (339)
T ss_dssp HHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-T
T ss_pred hhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeec
Confidence 467777777765566678899999777666666665 2 56666777764
No 206
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=22.41 E-value=2.3e+02 Score=18.44 Aligned_cols=50 Identities=24% Similarity=0.233 Sum_probs=28.3
Q ss_pred HHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCc
Q 041947 13 AKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGG 81 (126)
Q Consensus 13 l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~ 81 (126)
+.+.+ ..++.++|.-+... .. . .++ +.+...+...+ .....-|++|.+|.
T Consensus 18 l~~~L~~~g~eV~D~G~~~~-~~-----~--~dY-----------pd~a~~va~~V~~~~~~~GIliCGtGi 70 (148)
T TIGR02133 18 LWLDLAAHEPEVCDVGVYDA-DD-----D--DDY-----------PCFCIAAAEAVARDAADLGIVIGGSGN 70 (148)
T ss_pred HHHHHHHCCCEEEECCCCCC-CC-----C--CCc-----------hHHHHHHHHHHhcCCCceEEEEcCCCh
Confidence 44444 67789999876321 00 1 112 14555555554 34566899999884
No 207
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=22.36 E-value=2e+02 Score=24.39 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=29.7
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHH
Q 041947 68 SKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYS 103 (126)
Q Consensus 68 ~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~ 103 (126)
..+.+|+|+|.+-..+...+..|.+. ....+++...
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~ 475 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNH 475 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcH
Confidence 57899999999988888888888877 5668887754
No 208
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=22.13 E-value=1.9e+02 Score=22.65 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=35.2
Q ss_pred hHHHHHHHhhcCC-CCeEEEEeCCCchHHHHHHHHHhc-----CcceecccHHhHHh
Q 041947 57 PEFLTQVASVCSK-EDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGYSAWVD 107 (126)
Q Consensus 57 ~~~~~~~~~~~~~-~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~~ 107 (126)
.++.+.+...++. ..+.++++++|..+-..|-.+.+. .|-.+.|+|.+...
T Consensus 102 v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~ 158 (447)
T COG0160 102 VELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTL 158 (447)
T ss_pred HHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccch
Confidence 4567777777654 566788888887766666555555 77788888866544
No 209
>PRK09694 helicase Cas3; Provisional
Probab=22.11 E-value=2e+02 Score=24.59 Aligned_cols=46 Identities=11% Similarity=0.289 Sum_probs=34.0
Q ss_pred hHHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHhc-----CcceecccH
Q 041947 57 PEFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRNA-----HVTKLEGGY 102 (126)
Q Consensus 57 ~~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~~-----~v~~l~gG~ 102 (126)
..+...+...+..++.++|+|++-.++......|.+. ++..+.+.+
T Consensus 547 ~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf 597 (878)
T PRK09694 547 LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARF 597 (878)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCC
Confidence 4555556555567889999999888888888888764 467777775
No 210
>PRK04280 arginine repressor; Provisional
Probab=22.09 E-value=1.2e+02 Score=19.69 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=16.2
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHh
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRN 92 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~ 92 (126)
-+++|+|.|.+...+......+..
T Consensus 123 GdDTilvi~~~~~~a~~l~~~l~~ 146 (148)
T PRK04280 123 GDDTCLIICRTEEDAEEVKDRFLN 146 (148)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHH
Confidence 467788888877766666655543
No 211
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=22.06 E-value=3e+02 Score=19.63 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=46.8
Q ss_pred eCHHHHHHhh----h-CCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhcCCCCeEEEEeCCCch
Q 041947 8 VGVDTAKDLL----S-SGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVCSKEDHIIVVCNSGGR 82 (126)
Q Consensus 8 i~~~~l~~~~----~-~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvyc~~g~~ 82 (126)
++.+++.+++ . +=-.+|.|++..|.....--|+.-|-++.=.-.....+......+...++. .+++++.+|..
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~--~~~~IsESGI~ 212 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPP--NIVKVGESGIE 212 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCC--CcEEEEcCCCC
Confidence 4555666666 1 224889999988876543335444433210001111122333444555553 36788899988
Q ss_pred HHHHHHHHHhc
Q 041947 83 ALRACVDLRNA 93 (126)
Q Consensus 83 s~~~~~~l~~~ 93 (126)
+..-+..+...
T Consensus 213 t~~d~~~l~~~ 223 (247)
T PRK13957 213 SRSDLDKFRKL 223 (247)
T ss_pred CHHHHHHHHHh
Confidence 87777777665
No 212
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=21.87 E-value=1.8e+02 Score=22.63 Aligned_cols=34 Identities=29% Similarity=0.578 Sum_probs=23.2
Q ss_pred EEEe-CCCchHHHHHHHHHhc-----CcceecccHHhHHh
Q 041947 74 IVVC-NSGGRALRACVDLRNA-----HVTKLEGGYSAWVD 107 (126)
Q Consensus 74 vvyc-~~g~~s~~~~~~l~~~-----~v~~l~gG~~~w~~ 107 (126)
+++| ++|..+...|-.+.+. +|-.+.||+.+|..
T Consensus 129 v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~ 168 (464)
T PRK06938 129 IQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQ 168 (464)
T ss_pred EEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccH
Confidence 4555 6888777766666554 56677788877653
No 213
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=21.78 E-value=1.8e+02 Score=24.98 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=30.8
Q ss_pred cCCCCeEEEEeCCCchHHHHHHHHHhc--CcceecccHHh
Q 041947 67 CSKEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGYSA 104 (126)
Q Consensus 67 ~~~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~~~ 104 (126)
...++|++|.|.+-..|...+..|.+. ...++++....
T Consensus 441 ~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q 480 (896)
T PRK13104 441 GVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHE 480 (896)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCCh
Confidence 468999999999988888888888888 55678777653
No 214
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=21.25 E-value=2.7e+02 Score=19.12 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=30.2
Q ss_pred cCCCCeEEEEeC---CCchHHHHHHHHHhc-----Ccc-eec---ccHHhHHhCCCCCC
Q 041947 67 CSKEDHIIVVCN---SGGRALRACVDLRNA-----HVT-KLE---GGYSAWVDEGVAGD 113 (126)
Q Consensus 67 ~~~~~~ivvyc~---~g~~s~~~~~~l~~~-----~v~-~l~---gG~~~w~~~g~~~~ 113 (126)
+.++++|+++++ +|.....++..+.+. .+. +++ ||.......|.|+.
T Consensus 115 ~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~ 173 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLS 173 (206)
T ss_pred cCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEE
Confidence 457788999986 677777777888877 333 444 44444444566654
No 215
>PRK06105 aminotransferase; Provisional
Probab=21.11 E-value=2e+02 Score=22.22 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHh----------c-CcceecccHHhHHhC
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRN----------A-HVTKLEGGYSAWVDE 108 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~----------~-~v~~l~gG~~~w~~~ 108 (126)
++.+.+....+.+-.-+++|++|..+..+|-.+.+ . +|-.+.+|+.+|...
T Consensus 96 ~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~ 157 (460)
T PRK06105 96 DLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIA 157 (460)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchh
Confidence 45555555543332457889989777766666532 1 566778888877643
No 216
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=20.87 E-value=1.3e+02 Score=19.66 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=11.2
Q ss_pred eEEEEeCCCchHHHHHHHH
Q 041947 72 HIIVVCNSGGRALRACVDL 90 (126)
Q Consensus 72 ~ivvyc~~g~~s~~~~~~l 90 (126)
.||-||.+|..++..|+.+
T Consensus 1 kiIY~c~gg~hsSvvAAai 19 (148)
T PF11385_consen 1 KIIYHCYGGAHSSVVAAAI 19 (148)
T ss_pred CEEEEeCCChhHHHHHHHH
Confidence 3677888775544444433
No 217
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=20.86 E-value=2.5e+02 Score=18.22 Aligned_cols=49 Identities=27% Similarity=0.301 Sum_probs=29.5
Q ss_pred HHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCch
Q 041947 12 TAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGR 82 (126)
Q Consensus 12 ~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~ 82 (126)
.+.+.| ..++.++|.-+. .+ .++ +++...+...+ ...+.=|++|.+|.-
T Consensus 17 ~l~~~L~~~G~eV~D~G~~---------~~--~dY-----------pd~a~~va~~V~~~~~~~GIliCGTGiG 68 (142)
T PRK08621 17 VVKDYLEDNKYEVVDVTEE---------GA--EDF-----------VDSTLAVAKEVNKSEDNLGIVIDAYGAG 68 (142)
T ss_pred HHHHHHHHCCCEEEECCCC---------CC--CCc-----------HHHHHHHHHHHHcCCCceEEEEcCCChh
Confidence 344555 677899999761 11 222 24555555554 345667999998853
No 218
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=20.77 E-value=1.2e+02 Score=18.03 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=11.9
Q ss_pred CeEEEEeCCCchHHHHH
Q 041947 71 DHIIVVCNSGGRALRAC 87 (126)
Q Consensus 71 ~~ivvyc~~g~~s~~~~ 87 (126)
.+|++.|++|.-++...
T Consensus 2 ~KIL~aCG~GvgSS~~i 18 (93)
T COG3414 2 IKILAACGNGVGSSTMI 18 (93)
T ss_pred cEEEEECCCCccHHHHH
Confidence 46999999986544433
No 219
>KOG2712 consensus Transcriptional coactivator [Transcription]
Probab=20.77 E-value=1e+02 Score=19.04 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=21.3
Q ss_pred CCcEEEecCChhhhcccCCCCccccccc
Q 041947 19 SGHRFLDVRTTEEFNESHVHGALNVPYL 46 (126)
Q Consensus 19 ~~~~iiDvR~~~e~~~ghI~ga~~i~~~ 46 (126)
.+-.+||+|....=..-.+||..-|.++
T Consensus 57 kGk~~VdIREyY~kdG~mlPgkKGISLs 84 (108)
T KOG2712|consen 57 KGKILVDIREYYVKDGKMLPGKKGISLS 84 (108)
T ss_pred CCceEEehhHhhhccCccccCccccccC
Confidence 3568999998655555688999888874
No 220
>PRK05066 arginine repressor; Provisional
Probab=20.61 E-value=1.3e+02 Score=19.83 Aligned_cols=25 Identities=16% Similarity=0.095 Sum_probs=18.6
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA 93 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~ 93 (126)
-+++|+|.|.+...+......+.++
T Consensus 127 GdDTilVi~~~~~~a~~l~~~l~~~ 151 (156)
T PRK05066 127 GDDTIFITPASGFTIKELLEAILEL 151 (156)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHH
Confidence 4678999999888777766666543
No 221
>PRK09273 hypothetical protein; Provisional
Probab=20.41 E-value=3.1e+02 Score=19.14 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=32.4
Q ss_pred HHHHHhh-hCCcEEEecCChhhhcccCCCCccccccccccccCCCCChHHHHHHHhhc--CCCCeEEEEeCCCchHHH
Q 041947 11 DTAKDLL-SSGHRFLDVRTTEEFNESHVHGALNVPYLFITQEGRVKNPEFLTQVASVC--SKEDHIIVVCNSGGRALR 85 (126)
Q Consensus 11 ~~l~~~~-~~~~~iiDvR~~~e~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivvyc~~g~~s~~ 85 (126)
+++.+.+ ..+..++|+-...+ .+. + +++ .++...+...+ ...+..|+.|++|.-...
T Consensus 20 ~~L~~~L~~~G~eV~D~G~~~~---~~~--s--~dY-----------pd~a~~vA~~V~~g~~d~GIliCGTGiG~si 79 (211)
T PRK09273 20 EALKKVADPKGHEVFNYGMYDE---EDH--Q--LTY-----------VQNGIMASILLNSKAVDFVVTGCGTGQGAML 79 (211)
T ss_pred HHHHHHHHHCCCEEEEeCCCCC---CCC--C--CCh-----------HHHHHHHHHHHHcCCCCEEEEEcCcHHHHHH
Confidence 4566666 67889999986421 100 1 222 13444444443 345778999999854433
No 222
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=20.41 E-value=2e+02 Score=22.03 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHh---------c-CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRN---------A-HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~---------~-~v~~l~gG~~~w~ 106 (126)
++.+.+....+.+-.-++||++|..+...|-.+.+ . +|-.+.||+.++.
T Consensus 90 ~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t 148 (428)
T PRK07986 90 ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDT 148 (428)
T ss_pred HHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCc
Confidence 34455555443333468889999776665554433 1 5667778776654
No 223
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=20.41 E-value=67 Score=16.08 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=10.6
Q ss_pred hCCcEEEecCChhh
Q 041947 18 SSGHRFLDVRTTEE 31 (126)
Q Consensus 18 ~~~~~iiDvR~~~e 31 (126)
..++.|||+..+..
T Consensus 20 ~~Gl~IvDISnPs~ 33 (42)
T PF08309_consen 20 NNGLVIVDISNPSN 33 (42)
T ss_pred CCCEEEEECCCCCC
Confidence 46789999987653
No 224
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=20.40 E-value=2.2e+02 Score=23.46 Aligned_cols=34 Identities=21% Similarity=0.117 Sum_probs=27.9
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHhc--CcceecccH
Q 041947 69 KEDHIIVVCNSGGRALRACVDLRNA--HVTKLEGGY 102 (126)
Q Consensus 69 ~~~~ivvyc~~g~~s~~~~~~l~~~--~v~~l~gG~ 102 (126)
.+++++|+|++-..+...+..|.+. .+..+.|..
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~ 507 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQ 507 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 4678999999988888888888887 666887765
No 225
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=20.30 E-value=2e+02 Score=22.38 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCchHHHHHHHHHh----------c-CcceecccHHhHH
Q 041947 58 EFLTQVASVCSKEDHIIVVCNSGGRALRACVDLRN----------A-HVTKLEGGYSAWV 106 (126)
Q Consensus 58 ~~~~~~~~~~~~~~~ivvyc~~g~~s~~~~~~l~~----------~-~v~~l~gG~~~w~ 106 (126)
++.+.+....+.+-.-++||++|..+...|-.+.+ . +|-.+.||+.+|.
T Consensus 94 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t 153 (466)
T PRK07030 94 ELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGET 153 (466)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCccc
Confidence 34555555443233368889999776665555542 1 4667788887664
No 226
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=20.11 E-value=2.2e+02 Score=20.12 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=20.7
Q ss_pred HHHHhhcCCC-CeEEEEeCCC-chHHHHHHHHHhc
Q 041947 61 TQVASVCSKE-DHIIVVCNSG-GRALRACVDLRNA 93 (126)
Q Consensus 61 ~~~~~~~~~~-~~ivvyc~~g-~~s~~~~~~l~~~ 93 (126)
..+.-.++.. .+|+++|..| +|....+..++..
T Consensus 126 ~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~ 160 (249)
T COG2365 126 ELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKL 160 (249)
T ss_pred HHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHH
Confidence 3333334555 8999999877 5666655555544
No 227
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=20.07 E-value=2.1e+02 Score=19.18 Aligned_cols=17 Identities=6% Similarity=0.052 Sum_probs=7.5
Q ss_pred HHHhhcCCCCeEEEEeC
Q 041947 62 QVASVCSKEDHIIVVCN 78 (126)
Q Consensus 62 ~~~~~~~~~~~ivvyc~ 78 (126)
.+...+......+||+.
T Consensus 23 ~lG~~la~~g~~lV~GG 39 (178)
T TIGR00730 23 ELGAYLAGQGWGLVYGG 39 (178)
T ss_pred HHHHHHHHCCCEEEECC
Confidence 33333333344455554
No 228
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=20.02 E-value=3.1e+02 Score=21.57 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=22.4
Q ss_pred CeEEEEeCCCchHHHHHHHHHhc-CcceecccH
Q 041947 71 DHIIVVCNSGGRALRACVDLRNA-HVTKLEGGY 102 (126)
Q Consensus 71 ~~ivvyc~~g~~s~~~~~~l~~~-~v~~l~gG~ 102 (126)
..+|||.+.|.|.-..+..|++. +...--+|-
T Consensus 271 SD~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~ 303 (618)
T KOG1352|consen 271 SDAIIYVGCGERGNEMSEVLMDFPELTMEVDGK 303 (618)
T ss_pred CCeEEEEcccccchhHHHHHHhChhhEEecCCc
Confidence 34677877788888888888887 555444443
Done!