BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041949
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PK9|B Chain B, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
           Phosphate-responsive Signal Transduction Pathway
 pdb|2PK9|D Chain D, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
           Phosphate-responsive Signal Transduction Pathway
 pdb|2PMI|B Chain B, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
           Phosphate- Responsive Signal Transduction Pathway With
           Bound Atp-Gamma-S
 pdb|2PMI|D Chain D, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
           Phosphate- Responsive Signal Transduction Pathway With
           Bound Atp-Gamma-S
          Length = 293

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 57/98 (58%)

Query: 74  PDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASK 133
           P+++I +Y  R+ +++     V + +  YID      P F +++   HR L+T   VA+K
Sbjct: 73  PNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATK 132

Query: 134 YVEDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKM 171
            + D    N+++A+VGG+  +ELN LE DFL  + +++
Sbjct: 133 GLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRI 170


>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
 pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
          Length = 1284

 Score = 27.7 bits (60), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 31  PLVISVLASLIERTMARNERIARNCRRALSKDSRSRVFDSHEIPDMTIQSYLERIFRYTK 90
           PL++ +   + + + A    +++N       D R+      E  +MT  +Y      YT 
Sbjct: 65  PLMMLIFGDMTD-SFASVGNVSKNSTNMSEADKRAMFAKLEE--EMTTYAYY-----YTG 116

Query: 91  AGPSVYVVAYVYIDRFCQANPGFRIH 116
            G  V +VAY+ +  +C A  G +IH
Sbjct: 117 IGAGVLIVAYIQVSFWCLA-AGRQIH 141


>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
 pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
 pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
 pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
           Poly-Specific Drug Binding
          Length = 1284

 Score = 27.7 bits (60), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 31  PLVISVLASLIERTMARNERIARNCRRALSKDSRSRVFDSHEIPDMTIQSYLERIFRYTK 90
           PL++ +   + + + A    +++N       D R+      E  +MT  +Y      YT 
Sbjct: 65  PLMMLIFGDMTD-SFASVGNVSKNSTNMSEADKRAMFAKLEE--EMTTYAYY-----YTG 116

Query: 91  AGPSVYVVAYVYIDRFCQANPGFRIH 116
            G  V +VAY+ +  +C A  G +IH
Sbjct: 117 IGAGVLIVAYIQVSFWCLA-AGRQIH 141


>pdb|2J16|B Chain B, Apo & Sulphate Bound Forms Of Sdp-1
          Length = 182

 Score = 27.7 bits (60), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 20  YSYSYENDSNTPLVISVLASLIERTMARNERIARNCRRALSKDS 63
           + Y +E+DS   L +  L S+I     + E+I  +C+  LS+ +
Sbjct: 89  HHYRWEHDSQIALDLPSLTSIIHAATTKREKILIHCQCGLSRSA 132


>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
 pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
 pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
 pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
          Length = 214

 Score = 27.7 bits (60), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 32  LVISVLASLIERTMARNERIARNCRRALSKDSRSRVFDS--HEIPDMTIQSYLERIFRYT 89
           ++   L SL E+ +   ER +  C       S   V D+  H   +   +    R     
Sbjct: 40  IITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDNGVHTEREYPYEKKQGRCRAKD 99

Query: 90  KAGPSVYVVAYVYI 103
           K GP VY+  Y Y+
Sbjct: 100 KKGPKVYITGYKYV 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,885,062
Number of Sequences: 62578
Number of extensions: 218192
Number of successful extensions: 823
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 8
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)