BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041949
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M205|CCU22_ARATH Cyclin-U2-2 OS=Arabidopsis thaliana GN=CYCU2-2 PE=1 SV=1
Length = 230
Score = 353 bits (907), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 169/211 (80%), Positives = 187/211 (88%), Gaps = 1/211 (0%)
Query: 1 MAVASASLVISPRKLRSDVYSYSYENDSNTPLVISVLASLIERTMARNERIARNCRRALS 60
MAV S SL ISPRKLRSD+YSYSY+N+S TPLVISVL+SLI+RT+ RNERI+R +
Sbjct: 1 MAV-SNSLTISPRKLRSDLYSYSYQNNSKTPLVISVLSSLIDRTLTRNERISRRALPSSG 59
Query: 61 KDSRSRVFDSHEIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNV 120
++++FD EIPDMTIQSYL RIFRYTKAGPSVYVVAYVYIDRFCQ NPGFRI TNV
Sbjct: 60 AGGKTQIFDCREIPDMTIQSYLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNV 119
Query: 121 HRLLITTIMVASKYVEDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVNVSVFES 180
HRLLITTIM+ASKYVEDLNYRNSYFA+VGGLET +LNKLEL+FLFLMGFK+HVNVSVFES
Sbjct: 120 HRLLITTIMIASKYVEDLNYRNSYFAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFES 179
Query: 181 YCCHLEREVSIGGGYHIERTLRCAEEIKSRQ 211
YCCHLEREVS GGGY IE+ LRCAEEIKSRQ
Sbjct: 180 YCCHLEREVSFGGGYQIEKALRCAEEIKSRQ 210
>sp|Q9SHD3|CCU21_ARATH Cyclin-U2-1 OS=Arabidopsis thaliana GN=CYCU2-1 PE=1 SV=1
Length = 222
Score = 344 bits (882), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 168/206 (81%), Positives = 185/206 (89%), Gaps = 5/206 (2%)
Query: 7 SLVISPRKLRSDVYSYSYENDSNT-PLVISVLASLIERTMARNERIARNCRRALSKDSRS 65
SL ISPRKLRSD+YSYSY++DSNT PLVISVL+SLIERT+ARNERI+R + ++
Sbjct: 3 SLAISPRKLRSDLYSYSYQDDSNTVPLVISVLSSLIERTLARNERISR----SYGGFGKT 58
Query: 66 RVFDSHEIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLI 125
RVFD EIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQ N GFRI TNVHRLLI
Sbjct: 59 RVFDCREIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLLI 118
Query: 126 TTIMVASKYVEDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVNVSVFESYCCHL 185
TTIM+ASKYVED+NY+NSYFA+VGGLET +LN LEL+FLFLMGFK+HVNVSVFESYCCHL
Sbjct: 119 TTIMIASKYVEDMNYKNSYFAKVGGLETEDLNNLELEFLFLMGFKLHVNVSVFESYCCHL 178
Query: 186 EREVSIGGGYHIERTLRCAEEIKSRQ 211
EREVSIGGGY IE+ LRCAEEIKSRQ
Sbjct: 179 EREVSIGGGYQIEKALRCAEEIKSRQ 204
>sp|Q7FAT5|CCP21_ORYSJ Cyclin-P2-1 OS=Oryza sativa subsp. japonica GN=CYCP2-1 PE=2 SV=1
Length = 217
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 138/199 (69%), Gaps = 6/199 (3%)
Query: 10 ISPRKLRSDVYSYSYENDS----NTPLVISVLASLIERTMARNERIARNCRRALSKDSRS 65
++ +L SDVY+ +D +TP+V+SVLASL+ER +ARNER + R+
Sbjct: 1 MASTELASDVYALPCGDDGTTALSTPVVVSVLASLLERHIARNER-DQAAAADGEAARRA 59
Query: 66 RVFDSHEIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLI 125
R FDS + DM++ ++LER RY P VYVVAY Y+DR + + G R+ + N RLL
Sbjct: 60 RAFDSGTVLDMSLHAFLERFSRYANVSPQVYVVAYAYLDRLRRGD-GVRVVSANAQRLLT 118
Query: 126 TTIMVASKYVEDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVNVSVFESYCCHL 185
T I+VASK+VED NY+NSYFA VGGL EL+ LELDFLFLM F+++V+VSVF+SYC HL
Sbjct: 119 TAILVASKFVEDRNYKNSYFAAVGGLTAAELSSLELDFLFLMQFRLNVSVSVFQSYCRHL 178
Query: 186 EREVSIGGGYHIERTLRCA 204
EREVS GGGY +ER L+ A
Sbjct: 179 EREVSYGGGYQVERCLKKA 197
>sp|O80513|CCU41_ARATH Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1
Length = 202
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 114/167 (68%), Gaps = 4/167 (2%)
Query: 25 ENDSNTPLVISVLASLIERTMARNERIARNCRRALSKDSRSRVFDSHEIPDMTIQSYLER 84
EN S +I+ L+SL+ER N+ RR ++ R VF P +TIQSYLER
Sbjct: 5 ENPSVMSKLIAFLSSLLERVAESNDL----TRRVATQSQRVSVFHGLSRPTITIQSYLER 60
Query: 85 IFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSY 144
IF+Y PS +VVAYVY+DRF P I++ NVHRLLIT++MVA+K+++DL Y N+Y
Sbjct: 61 IFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAY 120
Query: 145 FARVGGLETNELNKLELDFLFLMGFKMHVNVSVFESYCCHLEREVSI 191
+A+VGG+ T E+N LELDFLF +GF+++V + F +Y +L++E+++
Sbjct: 121 YAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTL 167
>sp|Q9LY16|CCU42_ARATH Cyclin-U4-2 OS=Arabidopsis thaliana GN=CYCU4-2 PE=1 SV=1
Length = 216
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 114/165 (69%), Gaps = 4/165 (2%)
Query: 31 PLVISVLASLIERTMARNERIARNCRRALSKDSRSRVFDSHEIPDMTIQSYLERIFRYTK 90
P VI+ ++SL++R N+ ++R R + R F++ P ++I+SY+ERIF+Y
Sbjct: 21 PNVITAMSSLLQRVSETNDDLSRPFR----EHKRISAFNAVTKPSISIRSYMERIFKYAD 76
Query: 91 AGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGG 150
S Y+VAY+Y+DRF Q P I ++NVHRL+IT+++V++K+++DL Y N+++A+VGG
Sbjct: 77 CSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGG 136
Query: 151 LETNELNKLELDFLFLMGFKMHVNVSVFESYCCHLEREVSIGGGY 195
+ T E+N LELDFLF +GF+++V +S + YC L+RE+ + Y
Sbjct: 137 ITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVMRTMY 181
>sp|Q9FKF6|CCU43_ARATH Cyclin-U4-3 OS=Arabidopsis thaliana GN=CYCU4-3 PE=1 SV=1
Length = 219
Score = 150 bits (378), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 109/161 (67%), Gaps = 8/161 (4%)
Query: 31 PLVISVLASLIERTMARNERIARNCRRALSKDSRSRVFDSHEIPDMTIQSYLERIFRYTK 90
P V++ ++ L++R N+ LS+ + F P ++I+SYLERIF Y
Sbjct: 23 PSVLTAMSYLLQRVSETNDN--------LSQKQKPSSFTGVTKPSISIRSYLERIFEYAN 74
Query: 91 AGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGG 150
S Y+VAY+Y+DRF + P I++ NVHRL+IT+++V++K+++DL+Y N Y+A+VGG
Sbjct: 75 CSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGG 134
Query: 151 LETNELNKLELDFLFLMGFKMHVNVSVFESYCCHLEREVSI 191
+ E+N LELDFLF +GF+++V VS F +YCC L+RE+++
Sbjct: 135 ISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAM 175
>sp|Q75HV0|CCP31_ORYSJ Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1
Length = 236
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 118/171 (69%), Gaps = 5/171 (2%)
Query: 21 SYSYENDSNTPLVISVLASLIERTMARNERIARNCRRALSKDSRSRVFDSHEIPDMTIQS 80
S S +N++ P V+ +LA+ ++R++ +NE + + + KDS S +F H PD++I+
Sbjct: 26 SQSKKNNTEYPKVLLLLAAYLDRSVQKNEDLLDSNK---IKDS-STIFHGHRAPDLSIKL 81
Query: 81 YLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNY 140
Y ERIF+Y++ PS +V+A +Y++R+ Q P + + +VHRLLIT+++VA+K+ +D +
Sbjct: 82 YAERIFKYSECSPSCFVLALIYMERYLQ-QPHVYMTSLSVHRLLITSVVVAAKFTDDAFF 140
Query: 141 RNSYFARVGGLETNELNKLELDFLFLMGFKMHVNVSVFESYCCHLEREVSI 191
N+++ARVGG+ T E+N+LELD LF + F++ V++ F SYC LE+E +
Sbjct: 141 NNAFYARVGGISTVEMNRLELDLLFNLDFRLKVDLETFGSYCLQLEKETMV 191
>sp|Q7XC35|CCP41_ORYSJ Cyclin-P4-1 OS=Oryza sativa subsp. japonica GN=CYCP4-1 PE=2 SV=1
Length = 212
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 102/161 (63%), Gaps = 1/161 (0%)
Query: 30 TPLVISVLASLIERTMARNERIARNCRRALSKDSRSRVFDSHEIPDMTIQSYLERIFRYT 89
P V+++L+SL++R RN+ A + S F P ++I YLERIFR+
Sbjct: 10 VPRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVS-AFQGLTKPAISIGGYLERIFRFA 68
Query: 90 KAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVG 149
PS YVVAY+Y+DRF + P + + NVHRLLIT+++ A K+V+D+ Y N+YFARVG
Sbjct: 69 NCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDDICYNNAYFARVG 128
Query: 150 GLETNELNKLELDFLFLMGFKMHVNVSVFESYCCHLEREVS 190
G+ E+N LE+DFLF + F ++V + F SYC L+ E++
Sbjct: 129 GISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMT 169
>sp|Q9LJ45|CCU11_ARATH Cyclin-U1-1 OS=Arabidopsis thaliana GN=CYCU1-1 PE=1 SV=1
Length = 210
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 115/166 (69%), Gaps = 3/166 (1%)
Query: 26 NDSNTPLVISVLASLIERTMARNERIARNCRRALSKDSRSRVFDSHEIPDMTIQSYLERI 85
++ TP V+++++ ++E+ +ARNE +A+ + K + F P ++I YLERI
Sbjct: 20 TEAATPRVLTIISHVMEKLVARNEWLAKQTK-GFGKSLEA--FHGVRAPSISIAKYLERI 76
Query: 86 FRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYF 145
++YTK P+ +VV YVYIDR +PG + + NVHRLL+T +M+A+K ++D++Y N ++
Sbjct: 77 YKYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFY 136
Query: 146 ARVGGLETNELNKLELDFLFLMGFKMHVNVSVFESYCCHLEREVSI 191
ARVGG+ +LNK+EL+ LFL+ F++ V+ VFESYC HLE+E+ +
Sbjct: 137 ARVGGVSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQL 182
>sp|Q8LB60|CCU31_ARATH Cyclin-U3-1 OS=Arabidopsis thaliana GN=CYCU3-1 PE=1 SV=2
Length = 221
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 100/159 (62%), Gaps = 4/159 (2%)
Query: 60 SKDSRSRVFDSHEIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATN 119
S DS + VFD P+++I YL+RIF+Y+ PS +V+A++YID F + N
Sbjct: 58 SPDSVT-VFDGRSPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRAL-LKPLN 115
Query: 120 VHRLLITTIMVASKYVEDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVNVSVFE 179
VHRL+ITT+M+A+K +D + N+Y+ARVGG+ T ELN+LE++ LF + FK+ V+ F
Sbjct: 116 VHRLIITTVMLAAKVFDDRYFNNAYYARVGGVTTRELNRLEMELLFTLDFKLQVDPQTFH 175
Query: 180 SYCCHLEREVSIGGG--YHIERTLRCAEEIKSRQTEDRI 216
++CC LE++ G + I+ R +E ++T D +
Sbjct: 176 THCCQLEKQNRDGFQIEWPIKEACRANKETWQKRTPDSL 214
>sp|Q0J9W0|CCP11_ORYSJ Cyclin-P1-1 OS=Oryza sativa subsp. japonica GN=CYCP1-1 PE=3 SV=2
Length = 264
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 28 SNTPLVISVLASLIERTMARN---ERIARNCRRALSKDSRSRVFDSH---EIPDMTIQSY 81
+ P + ++A ++R +ARN E ++ A + F++ P + + Y
Sbjct: 20 APPPPELDMVARAVQRLVARNDAVEALSGGGEAAAGLGAGMAAFEAARGAPAPRIGVAQY 79
Query: 82 LERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYR 141
LER+ RY P YVVAY Y+D P + + NVHRLL+ ++VASK ++D ++
Sbjct: 80 LERVHRYAGLEPECYVVAYAYVDMAAHRRPAAAVASRNVHRLLLACLLVASKVLDDFHHN 139
Query: 142 NSYFARVGGLETNELNKLELDFLFLMGFKMHVNVSVFESYCCHLEREVSIGGG 194
N++FARVGG+ E+N+LEL+ L ++ F++ ++ V+E Y HLE+E GG
Sbjct: 140 NAFFARVGGVSNAEMNRLELELLAVLDFEVMLSHRVYELYREHLEKEARRDGG 192
>sp|P40186|PCL7_YEAST PHO85 cyclin-7 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL7 PE=1 SV=3
Length = 285
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 27 DSNTPLVISVLASLIERTMARNERIARNCRRALSKDSRSRV------FDSHEIPDMTIQS 80
D T +I ++++L+ R + N+ + + +S ++ + F +P++ +
Sbjct: 104 DFPTDELILMISALLNRIITANDE-TTDVSQQVSDETEDELLTPILAFYGKNVPEIAVVQ 162
Query: 81 YLERIFRYTKAGPSVYVVAYVYIDRFCQ-----------ANPGFRIHATNVHRLLITTIM 129
YLERI +Y +++ VY DR + A F + + N+HRLLIT +
Sbjct: 163 YLERIQKYCPTTNDIFLSLLVYFDRISKNYGHSSERNGCAKQLFVMDSGNIHRLLITGVT 222
Query: 130 VASKYVEDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVNVSVFESY 181
+ +K++ D Y NS +A+VGG+ ELN LEL FL L FK+ V+V + Y
Sbjct: 223 ICTKFLSDFFYSNSRYAKVGGISLQELNHLELQFLILCDFKLLVSVEEMQKY 274
>sp|O42979|YGZA_SCHPO PHO85 cyclin-like protein C20F10.10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC20F10.10 PE=3 SV=1
Length = 243
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 4/153 (2%)
Query: 33 VISVLASLIERTMARNERIARNCRRALSKDSRSR---VFDSHEIPDMTIQSYLERIFRYT 89
+ISV S + R + + + LS S +F + +P ++IQ+YL RI +Y
Sbjct: 34 MISVFLSRLTRLNDSKQEATESDQIPLSPTSLKNPCLIFSAKNVPSISIQAYLTRILKYC 93
Query: 90 KAGPSVYVVAYVYIDRFCQA-NPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARV 148
A V++ +Y+DR + I++ N+HR LI ASK+ D+ Y NS +A+V
Sbjct: 94 PATNDVFLSVLIYLDRIVHHFHFTVFINSFNIHRFLIAGFTAASKFFSDVFYTNSRYAKV 153
Query: 149 GGLETNELNKLELDFLFLMGFKMHVNVSVFESY 181
GG+ +ELN LEL F F + +++ ++Y
Sbjct: 154 GGIPLHELNHLELSFFVFNDFNLFISLEDLQAY 186
>sp|Q06712|PREG_NEUCR Nuc-1 negative regulatory protein preg OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=preg PE=1 SV=1
Length = 483
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 8/150 (5%)
Query: 32 LVISVLASLIERTMARNERIARNCRRALSKDSRSRVFDSHEIPDMTIQSYLERIFRYTKA 91
L+ +L LIE +++ + R L++ F S P +++ YL R+ ++
Sbjct: 278 LIAHMLGELIELNDEAAQKVGQ--RHNLTR------FHSRTTPGISVLDYLHRLAKHAYL 329
Query: 92 GPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGL 151
P + + YIDR C F I+ VHR LIT VA+K + D N+ +ARVGG+
Sbjct: 330 SPPILLSMVYYIDRLCALYSDFTINTLTVHRFLITAATVAAKGLSDSFLTNTLYARVGGV 389
Query: 152 ETNELNKLELDFLFLMGFKMHVNVSVFESY 181
ELN LEL+FL + +K+ + V +Y
Sbjct: 390 RVAELNMLELEFLHRVDWKIVPDPDVLVAY 419
>sp|P40038|PCL6_YEAST PHO85 cyclin-6 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL6 PE=1 SV=1
Length = 420
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 103 IDRFCQANPG-FRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGLETNELNKLEL 161
+ R +A+P F + + N+HRL+I I V++K++ D Y NS ++RVGG+ ELN LEL
Sbjct: 319 VQRDSRAHPQMFVMDSHNIHRLIIAGITVSTKFLSDFFYSNSRYSRVGGISLQELNHLEL 378
Query: 162 DFLFLMGFKMHVNVSVFESYCCHLER 187
FL L F++ ++V+ + Y L R
Sbjct: 379 QFLVLCDFELLISVNELQRYADLLYR 404
>sp|P20052|PHO80_YEAST PHO85 cyclin PHO80 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PHO80 PE=1 SV=3
Length = 293
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 57/98 (58%)
Query: 74 PDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASK 133
P+++I +Y R+ +++ V + + YID P F +++ HR L+T VA+K
Sbjct: 73 PNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATK 132
Query: 134 YVEDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKM 171
+ D N+++A+VGG+ +ELN LE DFL + +++
Sbjct: 133 GLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRI 170
>sp|P53124|PCL10_YEAST PHO85 cyclin-10 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL10 PE=1 SV=1
Length = 433
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 74 PDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPG-------FRIHATNVHRLLIT 126
P ++ +L+RI + P+VY+VA ID G + VHR++I
Sbjct: 306 PTLSSADFLKRIQDKCEYQPTVYLVATFLIDTLFLTRDGNNILQLKLNLQEKEVHRMIIA 365
Query: 127 TIMVASKYVEDLNYRNSYFARVGGLETNELNKLELDFL 164
+ +++K +ED + + YF++V G+ L KLE+ L
Sbjct: 366 AVRLSTKLLEDFVHSHEYFSKVCGISKRLLTKLEVSLL 403
>sp|Q8K158|CNPD1_MOUSE Protein CNPPD1 OS=Mus musculus GN=Cnppd1 PE=2 SV=1
Length = 407
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 79 QSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYV--- 135
+ Y+ + R P ++A VYI+R NP + H ++ LI ++MVASKY+
Sbjct: 79 KKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLI-SMMVASKYLYDE 137
Query: 136 -EDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVNV-SVFE 179
E+ N + GG+ LN LE FL M ++++ + +FE
Sbjct: 138 GEEEEVFNDEWGAAGGVAVATLNALERSFLSAMDWRLYTDPREIFE 183
>sp|Q5E9J2|CNPD1_BOVIN Protein CNPPD1 OS=Bos taurus GN=CNPPD1 PE=2 SV=1
Length = 411
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 79 QSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYV--- 135
+ Y+ + R P ++A VYI+R NP + H ++ LI ++MVASKY+
Sbjct: 79 KKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLI-SMMVASKYLYDE 137
Query: 136 -EDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVNV-SVFE 179
E+ N + GG+ LN LE FL M ++++ + +FE
Sbjct: 138 GEEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWRLYTDPREIFE 183
>sp|Q6P7B2|CNPD1_RAT Protein CNPPD1 OS=Rattus norvegicus GN=Cnppd1 PE=2 SV=1
Length = 408
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 79 QSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYV--- 135
+ Y+ + R P ++A VYI+R NP + H ++ LI ++MVASKY+
Sbjct: 79 KKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLI-SMMVASKYLYDE 137
Query: 136 -EDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVNV-SVFE 179
E+ N + GG+ LN LE FL M ++++ + +FE
Sbjct: 138 GEEEEVFNDEWGAAGGVAVPTLNALERSFLSAMDWRLYTDPREIFE 183
>sp|Q5R4U5|CNPD1_PONAB Protein CNPPD1 OS=Pongo abelii GN=CNPPD1 PE=2 SV=1
Length = 410
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 79 QSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYV--- 135
+ Y+ + R P ++A VYI+R NP + H ++ LI ++MVASKY+
Sbjct: 79 KKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLI-SMMVASKYLYDE 137
Query: 136 -EDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVNV-SVFE 179
E+ N + GG+ LN LE FL M + ++ + +FE
Sbjct: 138 GEEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWHLYTDPREIFE 183
>sp|Q9BV87|CNPD1_HUMAN Protein CNPPD1 OS=Homo sapiens GN=CNPPD1 PE=2 SV=2
Length = 410
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 79 QSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYV--- 135
+ Y+ + R P ++A VYI+R NP + H ++ LI ++MVASKY+
Sbjct: 79 KKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLI-SMMVASKYLYDE 137
Query: 136 -EDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVNV-SVFE 179
E+ N + GG+ LN LE FL M + ++ + +FE
Sbjct: 138 GEEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWHLYTDPREIFE 183
>sp|Q08966|PCL8_YEAST PHO85 cyclin-8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL8 PE=1 SV=1
Length = 492
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 74 PDMTIQSYLERIFRYTKAGPSVYVVA-----YVYIDRFCQANP---GFRIHATNVHRLLI 125
P ++ + +++RI G VY+ A V++ R P ++ HR++I
Sbjct: 362 PSLSFRDFIDRIQNKCMFGAVVYLGATYLLQLVFLTRDEMDGPIKLKAKLQEDQAHRIII 421
Query: 126 TTIMVASKYVEDLNYRNSYFARVGGLETNELNKLELDFLFLMGF 169
+TI +A+K +ED + +Y +V G+ L KLE+ F+ + F
Sbjct: 422 STIRIATKLLEDFVHSQNYICKVFGISKRLLTKLEISFMASVNF 465
>sp|Q8ND76|CCNY_HUMAN Cyclin-Y OS=Homo sapiens GN=CCNY PE=1 SV=2
Length = 341
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 58 ALSKDSRSRVFDSHEIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHA 117
LSK +D H I ++ +F + +V VY++R I
Sbjct: 151 PLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLL-TYAEIDICP 209
Query: 118 TNVHRLLITTIMVASKYVEDLNYRNSYFARV-GGLETNELNKLELDFLFLMGFKMHVNVS 176
N R+++ I++ASK +D N + ++ + ++N+LE FL L+ F ++V S
Sbjct: 210 ANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSS 269
Query: 177 VFESY 181
V+ Y
Sbjct: 270 VYAKY 274
>sp|Q8BGU5|CCNY_MOUSE Cyclin-Y OS=Mus musculus GN=Ccny PE=1 SV=1
Length = 341
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 58 ALSKDSRSRVFDSHEIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHA 117
LSK +D H I ++ +F + +V VY++R I
Sbjct: 151 PLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLL-TYAEIDICP 209
Query: 118 TNVHRLLITTIMVASKYVEDLNYRNSYFARV-GGLETNELNKLELDFLFLMGFKMHVNVS 176
N R+++ I++ASK +D N + ++ + ++N+LE FL L+ F ++V S
Sbjct: 210 ANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSS 269
Query: 177 VFESY 181
V+ Y
Sbjct: 270 VYAKY 274
>sp|Q5ZJH7|CNPD1_CHICK Protein CNPPD1 OS=Gallus gallus GN=CNPPD1 PE=2 SV=1
Length = 439
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 79 QSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYV--- 135
+ Y+ + R P ++A VYI+R NP + + + L + ++MVASKY+
Sbjct: 77 KKYVSHVSREACISPCSMMLALVYIERLRHRNPEY-LQQISSSDLFLISMMVASKYLYDE 135
Query: 136 -EDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVN 174
E+ N + G ++ +N LE++FL + + ++ +
Sbjct: 136 GEEEEVFNDEWGAAGKVDVQTMNTLEMNFLSAIDWSLYTD 175
>sp|Q5T2Q4|CCYL2_HUMAN Cyclin-Y-like protein 2 OS=Homo sapiens GN=CCNYL2 PE=2 SV=2
Length = 361
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 81 YLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNY 140
++ +F+ + +V+ +YI+R + I TN R+++ I++ASK D+
Sbjct: 196 FVRTLFKAMRLTAEFAIVSLIYIERLV-SYADIDICPTNWKRIVLGAILLASKVWSDMAV 254
Query: 141 RNSYFARV-GGLETNELNKLELDFLFLMGFKMHVNVSVFESYCCHLEREVSIGGG----- 194
N + ++ + E+N+LE FL L+ + + SV+ + L R ++ G
Sbjct: 255 WNEDYCKLFKNITVEEMNELERQFLKLINYNNSITNSVYSRFYFDL-RTLAHNNGLYSPV 313
Query: 195 YHIERTLRCAEEIKSRQTEDRIFNHIAR 222
Y ++R E SR +D++F A+
Sbjct: 314 YLLDRERAWKLEAFSRMEQDKVFYSAAK 341
>sp|Q4R871|CCYL2_MACFA Cyclin-Y-like protein 2 OS=Macaca fascicularis GN=CCNYL2 PE=2 SV=1
Length = 360
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 81 YLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNY 140
++ +F+ + +V+ +YI+R + I TN R+++ I++ASK D+
Sbjct: 195 FVRTLFKAIRLTAEFAIVSLIYIERLV-SYADIDICPTNWKRIVLGAILLASKVWSDMAV 253
Query: 141 RNSYFARV-GGLETNELNKLELDFLFLMGFKMHVNVSVFESY 181
N + ++ + E+N+LE FL L+ + + V SV+ +
Sbjct: 254 WNEDYCKLFENITVEEMNELERQFLKLINYNIGVTGSVYSRF 295
>sp|P0C7X3|CCYL3_HUMAN Putative cyclin-Y-like protein 3 OS=Homo sapiens GN=CCNYL3 PE=2
SV=1
Length = 344
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 85 IFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSY 144
+F+ K +VA VYI R + + TN ++++ T+++ASK +RN
Sbjct: 83 LFQVIKLTAPCAIVALVYIKRLL-TSANIDLCPTNWKKIVLGTMLLASKV-----WRNHG 136
Query: 145 FARVGGLETNE------LNKLELDFLFLMGFKMHVNVSVFESY 181
V + ++ ++K+E FL L+ F +HV+ SV+ Y
Sbjct: 137 LWSVDDSQNSKDTAVENMSKMEKCFLELLEFNIHVSASVYAKY 179
>sp|P34624|YOJ1_CAEEL Uncharacterized cyclin-like protein ZK353.1 OS=Caenorhabditis
elegans GN=ZK353.1 PE=1 SV=3
Length = 357
Score = 37.4 bits (85), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 74 PDM-TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVAS 132
PD I ++ +F + ++ VYI+R + +N R+++ +IM+AS
Sbjct: 186 PDHRNIYRFVRNLFSSAQLTAECAIITLVYIERLLNYA-EMDLCPSNWRRVVLGSIMLAS 244
Query: 133 KYVEDLNYRNSYFARV-GGLETNELNKLELDFLFLMGFKMHVNVSVFESY 181
K +D N + ++ +++N+LE FL + F + V SV+ Y
Sbjct: 245 KVWDDQAVWNVDYCQILRDTNVDDMNELERRFLECLDFNIEVPSSVYAKY 294
>sp|Q9FVX0|CCA12_ARATH Cyclin-A1-2 OS=Arabidopsis thaliana GN=CYCA1-2 PE=1 SV=2
Length = 442
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 81 YLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKY------ 134
+L + + P +A Y+DR+ N I+ N+ L +T +M+A+KY
Sbjct: 218 WLVEVAEEYRLSPETLYLAVNYVDRYLTGN---AINKQNLQLLGVTCMMIAAKYEEVCVP 274
Query: 135 -VEDLNY--RNSYFARVGGLETNELNKLELDFLFLMGFKM 171
VED Y N+Y NEL ++E L + F++
Sbjct: 275 QVEDFCYITDNTYL-------RNELLEMESSVLNYLKFEL 307
>sp|Q9HMX8|DP2L_HALSA DNA polymerase II large subunit OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=polC PE=3 SV=1
Length = 1370
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 37 LASLIERTMARNERIARNCRRALSKDSRSRVFDSHEIPDM--TIQSYLERIFRYTKAGPS 94
L S++++ A+ E +AR R D RV + H +PD+ ++++ + R G
Sbjct: 1237 LGSMMDKMDAQLE-LARKLRSVAETDVAERVIEYHFLPDLIGNLRAFSRQETRCLDCGEK 1295
Query: 95 VYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKY 134
+ R C +H +V++ + T + VA++Y
Sbjct: 1296 YRRMPLSGDCRECGGRVNLTVHEGSVNKYMDTAMRVATEY 1335
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,652,155
Number of Sequences: 539616
Number of extensions: 2806566
Number of successful extensions: 8253
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 8216
Number of HSP's gapped (non-prelim): 34
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)