Query 041949
Match_columns 225
No_of_seqs 194 out of 897
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 21:23:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pmi_B PHO85 cyclin PHO80, ami 100.0 1.7E-39 5.9E-44 289.4 12.9 154 30-186 32-185 (293)
2 1f5q_B Gamma herpesvirus cycli 98.9 1.5E-08 5.1E-13 88.2 12.3 104 77-183 51-157 (252)
3 2f2c_A Cyclin homolog, V-cycli 98.8 3.4E-08 1.1E-12 85.3 12.5 102 78-182 55-159 (254)
4 3g33_B CCND3 protein; Ser/Thr 98.8 2.3E-08 7.7E-13 89.2 11.1 103 77-182 73-178 (306)
5 1g3n_C V-cyclin; cyclin-depend 98.8 3.7E-08 1.3E-12 85.2 11.1 103 77-182 53-158 (257)
6 2cch_B Cyclin A2, cyclin-A; co 98.8 4.8E-08 1.6E-12 84.6 11.1 103 77-182 41-146 (260)
7 2b9r_A Human cyclin B1; cell c 98.7 7.8E-08 2.7E-12 83.9 12.0 102 77-181 40-144 (269)
8 2w96_A G1/S-specific cyclin-D1 98.7 8E-08 2.7E-12 83.7 12.0 103 77-182 59-164 (271)
9 1w98_B Cyclin E, G1/S-specific 98.7 9.1E-08 3.1E-12 84.2 12.3 106 77-184 52-160 (283)
10 2i53_A Cyclin K; cell cycle, t 98.4 1.2E-06 4.1E-11 75.2 9.3 99 78-180 44-156 (258)
11 1zp2_A RNA polymerase II holoe 98.4 2.9E-06 9.9E-11 72.2 11.1 100 76-179 29-138 (235)
12 2ivx_A Cyclin-T2; transcriptio 98.3 4.4E-06 1.5E-10 71.8 11.0 99 78-180 34-151 (257)
13 3rgf_B Cyclin-C; protein kinas 98.2 1.1E-05 3.8E-10 70.8 11.8 106 77-185 45-168 (285)
14 2pk2_A Cyclin-T1, protein TAT; 98.0 4E-06 1.4E-10 76.3 5.5 100 77-180 40-158 (358)
15 1jkw_A Cyclin H; cell cycle, c 98.0 7.4E-05 2.5E-09 66.9 13.0 103 80-186 62-175 (323)
16 1c9b_A General transcription f 98.0 7.8E-05 2.7E-09 62.0 11.6 104 78-185 8-113 (207)
17 1ais_B TFB TFIIB, protein (tra 97.4 0.00082 2.8E-08 55.3 9.4 105 77-185 11-119 (200)
18 1ais_B TFB TFIIB, protein (tra 93.8 0.2 6.8E-06 40.7 7.7 95 73-171 101-197 (200)
19 3k7a_M Transcription initiatio 93.7 0.052 1.8E-06 48.6 4.2 106 77-186 128-247 (345)
20 1c9b_A General transcription f 91.6 0.59 2E-05 38.1 7.7 88 74-165 98-185 (207)
21 4bbr_M Transcription initiatio 82.1 3.5 0.00012 36.8 7.3 91 76-170 127-217 (345)
22 2i53_A Cyclin K; cell cycle, t 78.8 16 0.00056 30.3 10.1 89 77-168 150-250 (258)
23 3rgf_B Cyclin-C; protein kinas 76.9 7.2 0.00025 33.5 7.5 97 78-180 157-254 (285)
24 2ivx_A Cyclin-T2; transcriptio 74.6 31 0.0011 28.6 10.7 89 77-167 145-238 (257)
25 2f2c_A Cyclin homolog, V-cycli 71.5 11 0.00039 31.4 7.3 88 77-167 151-246 (254)
26 3k7a_M Transcription initiatio 69.5 0.96 3.3E-05 40.3 0.0 89 72-164 229-317 (345)
27 2cch_B Cyclin A2, cyclin-A; co 67.1 20 0.00068 30.0 7.9 86 77-165 138-224 (260)
28 2b9r_A Human cyclin B1; cell c 66.1 9.5 0.00033 32.3 5.7 83 77-163 137-219 (269)
29 3g33_B CCND3 protein; Ser/Thr 63.1 20 0.00067 31.1 7.2 89 77-168 170-266 (306)
30 2pk2_A Cyclin-T1, protein TAT; 60.2 24 0.00081 31.4 7.4 90 77-168 152-246 (358)
31 1g3n_C V-cyclin; cyclin-depend 59.2 34 0.0012 28.5 7.8 87 77-166 150-245 (257)
32 1zp2_A RNA polymerase II holoe 58.5 13 0.00045 30.6 5.1 84 77-166 133-217 (235)
33 4bbr_M Transcription initiatio 52.1 3 0.0001 37.2 0.0 92 72-167 229-320 (345)
34 2w96_A G1/S-specific cyclin-D1 46.3 79 0.0027 26.4 8.1 88 77-167 156-255 (271)
35 1w98_B Cyclin E, G1/S-specific 23.6 3.2E+02 0.011 22.8 8.7 77 77-164 150-237 (283)
No 1
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=100.00 E-value=1.7e-39 Score=289.41 Aligned_cols=154 Identities=23% Similarity=0.359 Sum_probs=139.9
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccccCCCCCchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhh
Q 041949 30 TPLVISVLASLIERTMARNERIARNCRRALSKDSRSRVFDSHEIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQA 109 (225)
Q Consensus 30 ~p~~i~~la~lle~~i~~n~~~~~~~~~~~~~~~~~~~F~~~~~P~isi~~fl~rI~~~~~~s~~~~llAliYldRl~~~ 109 (225)
...++.+||.+|+++|+.||....+. ...+..++.||+..+|+|+|++|+.||+++++|+++|+++|++||||+..+
T Consensus 32 ~~dlv~~IA~~L~~LI~~Nd~~~~~~---~~~~~~~t~F~~~~~P~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~ 108 (293)
T 2pmi_B 32 RTDLVVLISRMLVSLIAINENSATKK---SDDQITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTV 108 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-----------CCCCTTCCSSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccccc---cccccccccccCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 45799999999999999999876432 123457789999999999999999999999999999999999999999999
Q ss_pred CCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCCCHHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHH
Q 041949 110 NPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGLETNELNKLELDFLFLMGFKMHVNVSVFESYCCHLE 186 (225)
Q Consensus 110 ~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGis~~eLN~LE~~FL~lLdf~L~Vs~~ef~~y~~~L~ 186 (225)
+|++.+++.||||++++|+|||+||+||.+|+|++||+|||++++|||.||++||.+|||+|+|+.++|..|+..+.
T Consensus 109 ~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~LE~eFL~lLdf~L~V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 109 YPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQK 185 (293)
T ss_dssp CTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTTTCCSCCTTHHHHHHHHSC
T ss_pred CCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHHHHHHHHHcCCceeeCHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999886653
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.89 E-value=1.5e-08 Score=88.22 Aligned_cols=104 Identities=13% Similarity=0.204 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCccccccccc--CCCCHH
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARV--GGLETN 154 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkV--gGis~~ 154 (225)
-+.+|+..+....+++++++.+|..|+||+..+.+ +.....+-+-++|+.+|+|+-+-....-+.+..+ +.++.+
T Consensus 51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~---v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~ 127 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR---IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTAD 127 (252)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSC---CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCC---cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHH
Confidence 47789999999999999999999999999999753 4567789999999999999988766666666655 468999
Q ss_pred HHHHHHHHHHHhCCCceeeC-HHHHHHHHH
Q 041949 155 ELNKLELDFLFLMGFKMHVN-VSVFESYCC 183 (225)
Q Consensus 155 eLN~LE~~FL~lLdf~L~Vs-~~ef~~y~~ 183 (225)
|+.+||+..|..|+|+|.++ +-.|..++.
T Consensus 128 ~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l 157 (252)
T 1f5q_B 128 KLLTLEVKSLDTLSWVADRCLSTDLICYIL 157 (252)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCCCHHHHHHHHH
Confidence 99999999999999999965 777776543
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=98.83 E-value=3.4e-08 Score=85.35 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccC--CCCHHH
Q 041949 78 IQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVG--GLETNE 155 (225)
Q Consensus 78 i~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVg--Gis~~e 155 (225)
+.+|+..+....+++++++.+|..|+||+..+. .+.....+-+.++|+.+|+|+-+-...+-+.+..++ .++.+|
T Consensus 55 lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~---~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 131 (254)
T 2f2c_A 55 LLTWMHLLCESFELDKSVFPLSVSILDRYLCKK---QGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLE 131 (254)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTS---CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHccC---CcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHH
Confidence 678999999999999999999999999999864 356677899999999999999887777777777773 489999
Q ss_pred HHHHHHHHHHhCCCceeeC-HHHHHHHH
Q 041949 156 LNKLELDFLFLMGFKMHVN-VSVFESYC 182 (225)
Q Consensus 156 LN~LE~~FL~lLdf~L~Vs-~~ef~~y~ 182 (225)
+.+||+..|+.|+|++.+. +..|-.++
T Consensus 132 i~~mE~~IL~~L~~~l~~~tp~~fl~~~ 159 (254)
T 2f2c_A 132 LINQEKDILEALKWDTEAVLATDFLIPL 159 (254)
T ss_dssp HHHHHHHHHHHTTTCCCCCCGGGSHHHH
T ss_pred HHHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence 9999999999999999865 66665543
No 4
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.82 E-value=2.3e-08 Score=89.20 Aligned_cols=103 Identities=15% Similarity=0.232 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccC--CCCHH
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVG--GLETN 154 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVg--Gis~~ 154 (225)
.+.+|+.++....+++++++.+|..|+||+..+.+ +.....+.+-++|+.+|+|+-+-...+-+.+..++ .++.+
T Consensus 73 ~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~---v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~ 149 (306)
T 3g33_B 73 MLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP---TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPR 149 (306)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCC---CCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHH
Confidence 36789999999999999999999999999999753 56788999999999999999887766777777764 48999
Q ss_pred HHHHHHHHHHHhCCCceeeC-HHHHHHHH
Q 041949 155 ELNKLELDFLFLMGFKMHVN-VSVFESYC 182 (225)
Q Consensus 155 eLN~LE~~FL~lLdf~L~Vs-~~ef~~y~ 182 (225)
++.+||+.+|..|+|+|.+. +..|..++
T Consensus 150 ~i~~mE~~IL~~L~f~l~~~tp~~fl~~~ 178 (306)
T 3g33_B 150 QLRDWEVLVLGKLKWDLAAVIAHDFLAFI 178 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCGGGGHHHH
T ss_pred HHHHHHHHHHHHcCCccCCCCHHHHHHHH
Confidence 99999999999999999875 66665444
No 5
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=98.78 E-value=3.7e-08 Score=85.19 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCccccccccc--CCCCHH
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARV--GGLETN 154 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkV--gGis~~ 154 (225)
.+.+|+..+....+++++++.+|..|+||+..+. .+.....+-+.++|+.+|+|+-+-...+-+.+..+ +.++.+
T Consensus 53 ~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~---~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 129 (257)
T 1g3n_C 53 LLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK---QVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQ 129 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccC---CCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHH
Confidence 3678999999999999999999999999999864 35567788999999999999987766677777777 448999
Q ss_pred HHHHHHHHHHHhCCCceeeC-HHHHHHHH
Q 041949 155 ELNKLELDFLFLMGFKMHVN-VSVFESYC 182 (225)
Q Consensus 155 eLN~LE~~FL~lLdf~L~Vs-~~ef~~y~ 182 (225)
|+.+||+..|..|+|++.+. +..|..++
T Consensus 130 ~i~~mE~~iL~~L~~~l~~~tp~~fl~~~ 158 (257)
T 1g3n_C 130 ELIDQEKELLEKLAWRTEAVLATDVTSFL 158 (257)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence 99999999999999999865 77776544
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.76 E-value=4.8e-08 Score=84.64 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccC--CCCHH
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVG--GLETN 154 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVg--Gis~~ 154 (225)
.+.+|+.++....+++++++.+|..|+||+..+.+ +...+.+-+.++|+.+|+|+-+-...+-+.+..++ .++.+
T Consensus 41 ~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~---v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~ 117 (260)
T 2cch_B 41 ILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMS---VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 117 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCC---CCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHH
Confidence 36689999999999999999999999999999753 45677889999999999999887666777777764 48999
Q ss_pred HHHHHHHHHHHhCCCceeeC-HHHHHHHH
Q 041949 155 ELNKLELDFLFLMGFKMHVN-VSVFESYC 182 (225)
Q Consensus 155 eLN~LE~~FL~lLdf~L~Vs-~~ef~~y~ 182 (225)
|+.+||+..|..|+|++.+. +..|..++
T Consensus 118 ~i~~mE~~iL~~L~~~l~~~tp~~fl~~~ 146 (260)
T 2cch_B 118 QVLRMEHLVLKVLTFDLAAPTVNQFLTQY 146 (260)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCCCHHHHHHHH
Confidence 99999999999999999865 66665443
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=98.74 E-value=7.8e-08 Score=83.86 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccC--CCCHH
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVG--GLETN 154 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVg--Gis~~ 154 (225)
.+.+|+.++....+++++++.+|..|+||+....+ +...+.+-+.++|+.+|+|+-+-...+-+.+..++ .++.+
T Consensus 40 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~---v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 116 (269)
T 2b9r_A 40 ILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS---VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKH 116 (269)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC---CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC---CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHH
Confidence 36789999999999999999999999999999653 56678999999999999999877666677777775 48999
Q ss_pred HHHHHHHHHHHhCCCceeeC-HHHHHHH
Q 041949 155 ELNKLELDFLFLMGFKMHVN-VSVFESY 181 (225)
Q Consensus 155 eLN~LE~~FL~lLdf~L~Vs-~~ef~~y 181 (225)
|+.+||+..|..|+|++.+. +..|...
T Consensus 117 eI~~mE~~IL~~L~f~l~~~tp~~fl~~ 144 (269)
T 2b9r_A 117 QIRQMEMKILRALNFGLGRPLPLHFLRR 144 (269)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 99999999999999999865 6666544
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=98.74 E-value=8e-08 Score=83.71 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCccccccccc--CCCCHH
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARV--GGLETN 154 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkV--gGis~~ 154 (225)
.+.+|+.++..+.+++++++.+|..|+||+..+. .+...+.+-+.++|+.+|+|+-+-...+-+.+..+ +.++.+
T Consensus 59 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~---~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~ 135 (271)
T 2w96_A 59 IVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLE---PVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPE 135 (271)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTS---CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcC---CcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHH
Confidence 3668899999999999999999999999999965 34567799999999999999987656666677766 358999
Q ss_pred HHHHHHHHHHHhCCCceeeC-HHHHHHHH
Q 041949 155 ELNKLELDFLFLMGFKMHVN-VSVFESYC 182 (225)
Q Consensus 155 eLN~LE~~FL~lLdf~L~Vs-~~ef~~y~ 182 (225)
|+.+||+.+|+.|+|++.+. +..|..++
T Consensus 136 eI~~mE~~IL~~L~~~l~~~tp~~fl~~~ 164 (271)
T 2w96_A 136 ELLQMELLLVNKLKWNLAAMTPHDFIEHF 164 (271)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 99999999999999999865 66666433
No 9
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.74 E-value=9.1e-08 Score=84.19 Aligned_cols=106 Identities=15% Similarity=0.226 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccC--CCCHH
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVG--GLETN 154 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVg--Gis~~ 154 (225)
.+.+|+.++....+++++++.+|..|+||+..... .+...+.+-+.++|+.+|+|+-+-...+-+.+..++ .++.+
T Consensus 52 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~--~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ 129 (283)
T 1w98_B 52 ILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQE--NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGD 129 (283)
T ss_dssp HHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCC--CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHH
Confidence 35689999999999999999999999999998632 245678999999999999999887666777777774 58999
Q ss_pred HHHHHHHHHHHhCCCceeeC-HHHHHHHHHH
Q 041949 155 ELNKLELDFLFLMGFKMHVN-VSVFESYCCH 184 (225)
Q Consensus 155 eLN~LE~~FL~lLdf~L~Vs-~~ef~~y~~~ 184 (225)
|+.+||+..|..|+|+|.+. +..|..++..
T Consensus 130 ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~ 160 (283)
T 1w98_B 130 EILTMELMIMKALKWRLSPLTIVSWLNVYMQ 160 (283)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCCCCHHHHHHHHHH
Confidence 99999999999999999865 7777765543
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.38 E-value=1.2e-06 Score=75.21 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccc----------
Q 041949 78 IQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFAR---------- 147 (225)
Q Consensus 78 i~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~Ak---------- 147 (225)
..+|+.++....+++.+++-.|..|+||+..++ .+...+.+-+.++|+.+|+|+-+ ...+-+.+.+
T Consensus 44 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~---~~~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~~~~~~~~~ 119 (258)
T 2i53_A 44 GARFIFDVGTRLGLHYDTLATGIIYFHRFYMFH---SFKQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTARSLLNDVQ 119 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTS---CTTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---ChhhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHhchhh
Confidence 458899999999999999999999999998864 24567788899999999999876 4433333332
Q ss_pred ---cCCCCHHHHHHHHHHHHHhCCCceeeC-HHHHHH
Q 041949 148 ---VGGLETNELNKLELDFLFLMGFKMHVN-VSVFES 180 (225)
Q Consensus 148 ---VgGis~~eLN~LE~~FL~lLdf~L~Vs-~~ef~~ 180 (225)
.+.-+.+++-.||+.+|..|+|++.+. +..|..
T Consensus 120 ~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~ 156 (258)
T 2i53_A 120 FGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLL 156 (258)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHH
Confidence 223357899999999999999999976 666653
No 11
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.36 E-value=2.9e-06 Score=72.21 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccc-cchHHHHHHHHHHhhhhcccCCcccccccccC-----
Q 041949 76 MTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHA-TNVHRLLITTIMVASKYVEDLNYRNSYFARVG----- 149 (225)
Q Consensus 76 isi~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~-~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVg----- 149 (225)
....+++.++....+++..++-.|..|+||+..++. +.. .+.+-+.++|+.+|+|+-+ ...+-+.+..+.
T Consensus 29 ~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~---~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 29 IYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKN---EEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC---SCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc---cccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHcc
Confidence 346688999999999999999999999999999753 345 7789999999999999976 444545555443
Q ss_pred ---CCCHHHHHHHHHHHHHhCCCceeeC-HHHHH
Q 041949 150 ---GLETNELNKLELDFLFLMGFKMHVN-VSVFE 179 (225)
Q Consensus 150 ---Gis~~eLN~LE~~FL~lLdf~L~Vs-~~ef~ 179 (225)
.++.+++-+||+.+|+.|+|++.+. +..|.
T Consensus 105 ~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l 138 (235)
T 1zp2_A 105 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSL 138 (235)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHH
T ss_pred chhhccHHHHHHHHHHHHHHCCCcEEecChHHHH
Confidence 5789999999999999999999975 55554
No 12
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=98.30 E-value=4.4e-06 Score=71.83 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccC--------
Q 041949 78 IQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVG-------- 149 (225)
Q Consensus 78 i~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVg-------- 149 (225)
..+|+.++....+++..++-.|..|+||+..++ .+...+.+-+.++|+.+|+|+-+- ..+-+.+.++.
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~---~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~~~~ 109 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHH---SFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHPLE 109 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTS---CTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhC---ChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhccCC
Confidence 568899999999999999999999999998864 345678899999999999999765 44444554332
Q ss_pred ---C-----CC--HHHHHHHHHHHHHhCCCceeeC-HHHHHH
Q 041949 150 ---G-----LE--TNELNKLELDFLFLMGFKMHVN-VSVFES 180 (225)
Q Consensus 150 ---G-----is--~~eLN~LE~~FL~lLdf~L~Vs-~~ef~~ 180 (225)
. +. .+++-.||+.+|..|+|++.+. +..|..
T Consensus 110 ~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~ 151 (257)
T 2ivx_A 110 PLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVV 151 (257)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHH
Confidence 1 12 8999999999999999999976 666654
No 13
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.22 E-value=1.1e-05 Score=70.84 Aligned_cols=106 Identities=19% Similarity=0.117 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCccccccccc--------
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARV-------- 148 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkV-------- 148 (225)
-..+||.++....+++..++-.|.+|+||+..++. +...+.+-+.++|+.+|+|+-+-...+.+....+
T Consensus 45 ~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s---~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~ 121 (285)
T 3rgf_B 45 FFTNVIQALGEHLKLRQQVIATATVYFKRFYARYS---LKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTR 121 (285)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSC---TTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCC---chhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccc
Confidence 35688999999999999999999999999999753 4567889999999999999865543332222211
Q ss_pred --------CCCCHHHHHHHHHHHHHhCCCceeeC-HHHHH-HHHHHH
Q 041949 149 --------GGLETNELNKLELDFLFLMGFKMHVN-VSVFE-SYCCHL 185 (225)
Q Consensus 149 --------gGis~~eLN~LE~~FL~lLdf~L~Vs-~~ef~-~y~~~L 185 (225)
...+.+++-.||+.+|..|+|++.+. +..|. .|+..+
T Consensus 122 ~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l 168 (285)
T 3rgf_B 122 FSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM 168 (285)
T ss_dssp CTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred ccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHh
Confidence 12578999999999999999999876 55544 555555
No 14
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=98.04 E-value=4e-06 Score=76.29 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCC------
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGG------ 150 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgG------ 150 (225)
...+||.++....+++..++-.|..|+||+...+ .+...+.+-+.++||.+|+|+-+- ..+-+.+..+..
T Consensus 40 ~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~---sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~~~~~ 115 (358)
T 2pk2_A 40 QAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQ---SFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTCLHPQ 115 (358)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTS---CTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHHHCSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhccc
Confidence 3668899999999999999999999999999864 345678899999999999999765 433334433220
Q ss_pred ----------C--CHHHHHHHHHHHHHhCCCceeeC-HHHHHH
Q 041949 151 ----------L--ETNELNKLELDFLFLMGFKMHVN-VSVFES 180 (225)
Q Consensus 151 ----------i--s~~eLN~LE~~FL~lLdf~L~Vs-~~ef~~ 180 (225)
+ ..++|-.||+.+|..|+|+|.+. +..|..
T Consensus 116 ~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~ 158 (358)
T 2pk2_A 116 ESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVV 158 (358)
T ss_dssp SCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHH
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHH
Confidence 1 26889999999999999999976 555543
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=98.01 E-value=7.4e-05 Score=66.86 Aligned_cols=103 Identities=19% Similarity=0.166 Sum_probs=81.1
Q ss_pred HHHHHHHHHcC--CCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCC------
Q 041949 80 SYLERIFRYTK--AGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGL------ 151 (225)
Q Consensus 80 ~fl~rI~~~~~--~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGi------ 151 (225)
++|.++....+ ++..++-.|.+|+||+...+. +...+.+-+.++|+.+|+|+-+- ..+-+.+..+...
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s---~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~~~~ 137 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNS---VMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPLGQE 137 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSC---TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCC---hhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChhhhH
Confidence 56888888999 999999999999999998653 45678899999999999998654 4455555554332
Q ss_pred -CHHHHHHHHHHHHHhCCCceeeC-HHHHH-HHHHHHH
Q 041949 152 -ETNELNKLELDFLFLMGFKMHVN-VSVFE-SYCCHLE 186 (225)
Q Consensus 152 -s~~eLN~LE~~FL~lLdf~L~Vs-~~ef~-~y~~~L~ 186 (225)
+.+++-.||+.+|..|+|+|.|. +..|. .|+..+.
T Consensus 138 ~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~ 175 (323)
T 1jkw_A 138 KALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHH
Confidence 36899999999999999999976 55554 4665554
No 16
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.97 E-value=7.8e-05 Score=61.95 Aligned_cols=104 Identities=6% Similarity=0.076 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCCCHHHHH
Q 041949 78 IQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGLETNELN 157 (225)
Q Consensus 78 i~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGis~~eLN 157 (225)
-.+++.++....+++..+.-.|..|++|+...+. +...+..-+..+|+.+|+|.-+ ...+-+.++.+.+++.+++.
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~---~~~~~~~~v~aaclylAcK~ee-~p~~l~di~~~~~~~~~~i~ 83 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKS---LKGRANDAIASACLYIACRQEG-VPRTFKEICAVSRISKKEIG 83 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTC---STTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---cCCCCHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHH
Confidence 3568889999999999999999999999998742 3456788999999999999855 57788899999999999999
Q ss_pred HHHHHHHHhCCCceeeC-H-HHHHHHHHHH
Q 041949 158 KLELDFLFLMGFKMHVN-V-SVFESYCCHL 185 (225)
Q Consensus 158 ~LE~~FL~lLdf~L~Vs-~-~ef~~y~~~L 185 (225)
++|+.+|+.|+|++.+. + .-..+|+..|
T Consensus 84 ~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l 113 (207)
T 1c9b_A 84 RCFKLILKALETSVDLITTGDFMSRFCSNL 113 (207)
T ss_dssp HHHHHHHHHTTCCCCCCCTHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcCcCCHHHHHHHHHHHC
Confidence 99999999999999765 3 3344555544
No 17
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.39 E-value=0.00082 Score=55.31 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCCCHHHH
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGLETNEL 156 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGis~~eL 156 (225)
.-.+++.++....+++..+.=.|..|.+|+...+ . +...+..-+..+|+-+|+|..+ ...+-+..+.+.|++.+++
T Consensus 11 ~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~--~-~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~v~~~~i 86 (200)
T 1ais_B 11 FALSELDRITAQLKLPRHVEEEAARLYREAVRKG--L-IRGRSIESVMAACVYAACRLLK-VPRTLDEIADIARVDKKEI 86 (200)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTT--T-TTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--C-cCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHH
Confidence 4567899999999999999999999999998853 2 2456688899999999999866 6788889999999999999
Q ss_pred HHHHHHHHHhCCCceee---CHHHHH-HHHHHH
Q 041949 157 NKLELDFLFLMGFKMHV---NVSVFE-SYCCHL 185 (225)
Q Consensus 157 N~LE~~FL~lLdf~L~V---s~~ef~-~y~~~L 185 (225)
..+|+.+++.++|++.+ ++..|- +|+..|
T Consensus 87 ~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L 119 (200)
T 1ais_B 87 GRSYRFIARNLNLTPKKLFVKPTDYVNKFADEL 119 (200)
T ss_dssp HHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHc
Confidence 99999999999999875 454443 555554
No 18
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=93.83 E-value=0.2 Score=40.74 Aligned_cols=95 Identities=11% Similarity=0.069 Sum_probs=76.8
Q ss_pred CCc--hhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCC
Q 041949 73 IPD--MTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGG 150 (225)
Q Consensus 73 ~P~--isi~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgG 150 (225)
.|. ++-.+|+.|+.+..+++..+.-.|..++.+..... . ....++.-+..+|+-+|++..+ ...+.+.++++.|
T Consensus 101 ~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~--~-~~gr~P~~iAaAaly~A~~~~~-~~~t~~ei~~~~~ 176 (200)
T 1ais_B 101 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRG--L-TSGKSPAGLVAAALYIASLLEG-EKRTQREVAEVAR 176 (200)
T ss_dssp TTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTT--C-CTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHT
T ss_pred CCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--c-ccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhC
Confidence 444 67789999999999999999888988888877742 2 3457788999999999999865 4467788999999
Q ss_pred CCHHHHHHHHHHHHHhCCCce
Q 041949 151 LETNELNKLELDFLFLMGFKM 171 (225)
Q Consensus 151 is~~eLN~LE~~FL~lLdf~L 171 (225)
++..++..-=.++...++-++
T Consensus 177 vs~~ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 177 VTEVTVRNRYKELVEKLKIKV 197 (200)
T ss_dssp CCHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCC
Confidence 999999888888887776443
No 19
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=93.66 E-value=0.052 Score=48.64 Aligned_cols=106 Identities=9% Similarity=0.096 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCCCHHHH
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGLETNEL 156 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGis~~eL 156 (225)
....+|.++....+++..+.=.|..|..|+...+ .+...+..-+..+|+.+|.| .+....+-+.++.+.+++.+|+
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~---~~kgr~~~~vaaAclyiAcR-~e~~prtl~ei~~~~~v~~keI 203 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEK---TLKGKSMESIMAASILIGCR-RAEVARTFKEIQSLIHVKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSC---SSCCCCSHHHHTTTTTTTSB-TTBSSCCHHHHHHSSSCCSHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cccCCcHHHHHHHHHHHHHH-HcCCCccHHHHHHHHCCCHHHH
Confidence 3457788888899999999999999999987743 13445678888999999999 4566788889999999999999
Q ss_pred HHHHHHHHHhCC------------Cceee-CHHHHH-HHHHHHH
Q 041949 157 NKLELDFLFLMG------------FKMHV-NVSVFE-SYCCHLE 186 (225)
Q Consensus 157 N~LE~~FL~lLd------------f~L~V-s~~ef~-~y~~~L~ 186 (225)
.+.++.+++.|+ +++.+ ++..|. +|+..|.
T Consensus 204 gr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~ 247 (345)
T 3k7a_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG 247 (345)
T ss_dssp HHHHHHHHHHHTCC------------------------------
T ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcC
Confidence 999999999998 66653 355554 5666554
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=91.61 E-value=0.59 Score=38.13 Aligned_cols=88 Identities=9% Similarity=0.042 Sum_probs=68.6
Q ss_pred CchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCCCH
Q 041949 74 PDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGLET 153 (225)
Q Consensus 74 P~isi~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGis~ 153 (225)
|...-.+|+.|+.+..+++..+.-.|...+.+.... +. ....+++-+..+|+.+|++..+ ...+.+.|+++.|++.
T Consensus 98 ~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~--~l-~~g~~P~~IAaAaiylA~~~~~-~~~~~~~i~~~~~v~~ 173 (207)
T 1c9b_A 98 DLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVEL--DL-VPGRSPISVAAAAIYMASQASA-EKRTQKEIGDIAGVAD 173 (207)
T ss_dssp CCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT--TC-STTCCHHHHHHHHHHHHHHTSS-SCCCHHHHHHHHTCCH
T ss_pred CcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc--Cc-cCCCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHhCCCH
Confidence 345668999999999999998888888777776653 22 3457789999999999999875 5567788999999998
Q ss_pred HHHHHHHHHHHH
Q 041949 154 NELNKLELDFLF 165 (225)
Q Consensus 154 ~eLN~LE~~FL~ 165 (225)
.++..-=++++.
T Consensus 174 ~tI~~~~~~l~~ 185 (207)
T 1c9b_A 174 VTIRQSYRLIYP 185 (207)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHH
Confidence 888766555444
No 21
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=82.06 E-value=3.5 Score=36.83 Aligned_cols=91 Identities=8% Similarity=0.015 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCCCHHH
Q 041949 76 MTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGLETNE 155 (225)
Q Consensus 76 isi~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGis~~e 155 (225)
..-...|.++....+++..+.=.|..+..|+.... + +...+..-+..+|+.+|.|- +....+-+..+.+.+++.+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~--~-~rGrs~e~vaAAclYiACR~-~~~prtl~eI~~~~~v~~ke 202 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEK--T-LKGKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKE 202 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--T-TTTCCHHHHHHHHHHHHHHH-TCCBCCHHHHHHHHTCCTTH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--C-ccCCCHHHHHHHHHHHHHHh-cCCCccHHHHHHHhCCCHHH
Confidence 35667788899999999999999988888887742 2 23456788888999999985 56778888899999999999
Q ss_pred HHHHHHHHHHhCCCc
Q 041949 156 LNKLELDFLFLMGFK 170 (225)
Q Consensus 156 LN~LE~~FL~lLdf~ 170 (225)
|.+..+.+.+.|+..
T Consensus 203 igr~~k~l~~~L~l~ 217 (345)
T 4bbr_M 203 FGKTLNIMKNILRGK 217 (345)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999999864
No 22
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=78.79 E-value=16 Score=30.26 Aligned_cols=89 Identities=8% Similarity=0.068 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccC-C-----ccccccc
Q 041949 77 TIQSYLERIFRYTKAGP----SVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDL-N-----YRNSYFA 146 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~----~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~-~-----~~N~~~A 146 (225)
+-.+|+.++.+..+.+. .+.-.|..+++..... . . .-.....-+-.+|+.+|.+..+-. . .....|-
T Consensus 150 ~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~-~-~-~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~ 226 (258)
T 2i53_A 150 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCT-T-L-SLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWW 226 (258)
T ss_dssp CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTT-T-G-GGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGG
T ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcC-C-c-hhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHH
Confidence 56789999999998887 4566676666665442 2 2 234678899999999999987532 2 2233565
Q ss_pred cc--CCCCHHHHHHHHHHHHHhCC
Q 041949 147 RV--GGLETNELNKLELDFLFLMG 168 (225)
Q Consensus 147 kV--gGis~~eLN~LE~~FL~lLd 168 (225)
.. .|++..++...-.+++.+.+
T Consensus 227 ~~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 227 EQFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp GGTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HHhccCCCHHHHHHHHHHHHHHHh
Confidence 54 59999999999988888754
No 23
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=76.90 E-value=7.2 Score=33.46 Aligned_cols=97 Identities=7% Similarity=-0.013 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCCCHHHHH
Q 041949 78 IQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGLETNELN 157 (225)
Q Consensus 78 i~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGis~~eLN 157 (225)
-.+|+.++.+..+.+....-.|..++...... ... -....+-+-.+|+.+|.+..+.. ...|-.+.|++..++.
T Consensus 157 P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t--~~~-l~~~Ps~IAaAaiylA~~~~~~~---~~~W~~~~~~~~~~l~ 230 (285)
T 3rgf_B 157 PYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRT--DLC-LLYPPFMIALACLHVACVVQQKD---ARQWFAELSVDMEKIL 230 (285)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SHH-HHSCHHHHHHHHHHHHHHHTTCC---CHHHHHTSCSCHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc--Chh-hccCHHHHHHHHHHHHHHHcCCC---hhhHHHHHCCCHHHHH
Confidence 37889999988888888888888777765442 222 24567889999999999988643 2578888999999999
Q ss_pred HHHHHHHHhC-CCceeeCHHHHHH
Q 041949 158 KLELDFLFLM-GFKMHVNVSVFES 180 (225)
Q Consensus 158 ~LE~~FL~lL-df~L~Vs~~ef~~ 180 (225)
..-.+++.+. .|+-+-..+++..
T Consensus 231 ~~~~~il~ly~~~~~~~~~~~~~~ 254 (285)
T 3rgf_B 231 EIIRVILKLYEQWKNFDERKEMAT 254 (285)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHhcccCchhhhHHH
Confidence 9999999875 4555544555544
No 24
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=74.61 E-value=31 Score=28.60 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCC-c--cccccccc--CCC
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLN-Y--RNSYFARV--GGL 151 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~-~--~N~~~AkV--gGi 151 (225)
+-..|+.++.+..+.+....-.|..++..-.... ...+ ....+-+-.+|+.+|.+..+-.. . ....|... .|+
T Consensus 145 ~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~-~~~l-~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~ 222 (257)
T 2ivx_A 145 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLT-TFCL-QYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTV 222 (257)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-CGGG-TSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSC
T ss_pred CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcc-cHHH-cCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCC
Confidence 5678999999999999888777877776554322 2222 35678999999999999976321 1 23467764 478
Q ss_pred CHHHHHHHHHHHHHhC
Q 041949 152 ETNELNKLELDFLFLM 167 (225)
Q Consensus 152 s~~eLN~LE~~FL~lL 167 (225)
+..++...-.+++...
T Consensus 223 ~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 223 TLELLDELTHEFLQIL 238 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8888888888888654
No 25
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=71.50 E-value=11 Score=31.42 Aligned_cols=88 Identities=8% Similarity=-0.022 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHcCCCchHH----HHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcc----ccccccc
Q 041949 77 TIQSYLERIFRYTKAGPSVY----VVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYR----NSYFARV 148 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~----llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~----N~~~AkV 148 (225)
+-.+|+.++.+..+.+.... -.|..+++. ... ....-.....-+-.+|+.+|.+...+..++ ....+++
T Consensus 151 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~-~l~--d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~ 227 (254)
T 2f2c_A 151 LATDFLIPLCNALKIPEDLWPQLYEAASTTICK-ALI--QPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI 227 (254)
T ss_dssp CGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHH-HTT--SGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHH-HHc--CcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 56789999999888887652 234444442 222 223345667788899999999985333332 3444556
Q ss_pred CCCCHHHHHHHHHHHHHhC
Q 041949 149 GGLETNELNKLELDFLFLM 167 (225)
Q Consensus 149 gGis~~eLN~LE~~FL~lL 167 (225)
.|++..++...=..+..++
T Consensus 228 tg~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 228 LNFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp HTCCHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHH
Confidence 8888887776655555543
No 26
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=69.52 E-value=0.96 Score=40.33 Aligned_cols=89 Identities=7% Similarity=-0.021 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCC
Q 041949 72 EIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGL 151 (225)
Q Consensus 72 ~~P~isi~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGi 151 (225)
..|.++..+|+.|+.+..+++..+.-.|..++.+..... + ....+++-+..+||.+|++..+. ..+.+.|+++.|+
T Consensus 229 ~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~--l-~~Gr~P~~IAaAaIylAa~~~~~-~~t~~eIa~~~~V 304 (345)
T 3k7a_M 229 NMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIK--E-IAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQV 304 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc--h-hcCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCC
Confidence 345566779999999999999888888888888776632 2 34567788899999999998753 4578899999999
Q ss_pred CHHHHHHHHHHHH
Q 041949 152 ETNELNKLELDFL 164 (225)
Q Consensus 152 s~~eLN~LE~~FL 164 (225)
+...|..-=.+++
T Consensus 305 se~TIr~~ykel~ 317 (345)
T 3k7a_M 305 TEGTIKSGYKILY 317 (345)
T ss_dssp -------------
T ss_pred CHHHHHHHHHHHH
Confidence 8776654333333
No 27
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=67.10 E-value=20 Score=30.02 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCCCHHH
Q 041949 77 TIQSYLERIFRYTKAGP-SVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGLETNE 155 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~-~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGis~~e 155 (225)
+-.+|+.++.+..+.+. .+.-+|..+++.-.. .... .-.....-+-.+|+.+|.+.++. ..++...+.+.|++..+
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~-~~~~-~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~ 214 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLI-DADP-YLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLES 214 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-CHHH-HTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-hHHH-HhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHH
Confidence 78899999999998876 566666666665322 1110 23456778889999999998875 23333444567777776
Q ss_pred HHHHHHHHHH
Q 041949 156 LNKLELDFLF 165 (225)
Q Consensus 156 LN~LE~~FL~ 165 (225)
+...=..+..
T Consensus 215 i~~~~~~l~~ 224 (260)
T 2cch_B 215 LKPCLMDLHQ 224 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655444443
No 28
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=66.11 E-value=9.5 Score=32.30 Aligned_cols=83 Identities=7% Similarity=-0.010 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCCCHHHH
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGLETNEL 156 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGis~~eL 156 (225)
+-.+|+.++.+..+.+....-+|..+++.-.. .. ..-.....-+-.+|+.+|.+.++.. .+++..+.+.|++..++
T Consensus 137 tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~-~~--~~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg~~~~~l 212 (269)
T 2b9r_A 137 LPLHFLRRASKIGEVDVEQHTLAKYLMELTML-DY--DMVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYLSYTEESL 212 (269)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGG-CG--GGSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSCCCSSTT
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hh--hhhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHCCCHHHH
Confidence 66799999999999888877777777765443 22 2234567789999999999988754 34455556788876555
Q ss_pred HHHHHHH
Q 041949 157 NKLELDF 163 (225)
Q Consensus 157 N~LE~~F 163 (225)
...=..+
T Consensus 213 ~~~~~~l 219 (269)
T 2b9r_A 213 LPVMQHL 219 (269)
T ss_dssp TTHHHHH
T ss_pred HHHHHHH
Confidence 4433333
No 29
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=63.08 E-value=20 Score=31.14 Aligned_cols=89 Identities=11% Similarity=0.108 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHcCCCchHH----HHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccc----ccc
Q 041949 77 TIQSYLERIFRYTKAGPSVY----VVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYF----ARV 148 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~----llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~----AkV 148 (225)
+..+|+.++++..+.+.... -.|..+++- .... ...-.....-+-.+|+.+|.+.++....+...| +++
T Consensus 170 tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~l-sl~d--~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~ 246 (306)
T 3g33_B 170 IAHDFLAFILHRLSLPRDRQALVKKHAQTFLAL-CATD--YTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGI 246 (306)
T ss_dssp CGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHH-HHHC--GGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH-HHhh--hhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Confidence 56778888888887775532 234445553 2222 222345677889999999999998765554444 356
Q ss_pred CCCCHHHHHHHHHHHHHhCC
Q 041949 149 GGLETNELNKLELDFLFLMG 168 (225)
Q Consensus 149 gGis~~eLN~LE~~FL~lLd 168 (225)
.|++..++...-..++.++.
T Consensus 247 tg~~~~~l~~c~~~I~~l~~ 266 (306)
T 3g33_B 247 TGTEVDCLRACQEQIEAALR 266 (306)
T ss_dssp HTCCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHH
Confidence 78888887776655555443
No 30
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=60.21 E-value=24 Score=31.42 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCC---ccccccccc--CCC
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLN---YRNSYFARV--GGL 151 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~---~~N~~~AkV--gGi 151 (225)
+-..||.++++..+.+....-.|..++....... ...+ ....+-+-++|+.+|.+.++-.. .....|..+ .++
T Consensus 152 ~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t-~l~l-~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~v 229 (358)
T 2pk2_A 152 HPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLT-TFSL-QYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATV 229 (358)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTS-CGGG-TSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSC
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchh-ccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccC
Confidence 4467889999988888887777877776554311 2222 35678888999999999986321 123567776 478
Q ss_pred CHHHHHHHHHHHHHhCC
Q 041949 152 ETNELNKLELDFLFLMG 168 (225)
Q Consensus 152 s~~eLN~LE~~FL~lLd 168 (225)
+..+|...-.+++..++
T Consensus 230 t~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 230 TLELLDELTHEFLQILE 246 (358)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=59.18 E-value=34 Score=28.50 Aligned_cols=87 Identities=7% Similarity=-0.120 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHcCCCchHH----HHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccC-----Ccccccccc
Q 041949 77 TIQSYLERIFRYTKAGPSVY----VVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDL-----NYRNSYFAR 147 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~----llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~-----~~~N~~~Ak 147 (225)
+-.+|+.++.+..+.+.... -.|..+++.-.. . ...-.....-+-.+|+.+|.+.++-. ..+....++
T Consensus 150 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~-d--~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~ 226 (257)
T 1g3n_C 150 LATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALV-D--PLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLAS 226 (257)
T ss_dssp CHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHT-S--TTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHh-C--cchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHH
Confidence 77899999999998887652 234455553322 2 22334667788899999999988621 122233334
Q ss_pred cCCCCHHHHHHHHHHHHHh
Q 041949 148 VGGLETNELNKLELDFLFL 166 (225)
Q Consensus 148 VgGis~~eLN~LE~~FL~l 166 (225)
+.|++..++...=..+..+
T Consensus 227 ~t~~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 227 ILGCDVSVLQAAVEQILTS 245 (257)
T ss_dssp HHTCCHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHH
Confidence 5678777776655554443
No 32
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=58.51 E-value=13 Score=30.60 Aligned_cols=84 Identities=8% Similarity=0.047 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCc-ccccccccCCCCHHH
Q 041949 77 TIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNY-RNSYFARVGGLETNE 155 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~-~N~~~AkVgGis~~e 155 (225)
.-.+|+.++.+..+++....-.|..++...... .. .-.....-+-.+|+.+|.+..+.... ....|+ |++..+
T Consensus 133 ~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~--~~-~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~---~~~~~~ 206 (235)
T 1zp2_A 133 HPYTSLEQAFHDGIINQKQLEFAWSIVNDSYAS--SL-CLMAHPHQLAYAALLISCCNDENTIPKLLDLIK---STDAFK 206 (235)
T ss_dssp CTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTT--TG-GGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHCC---HHHHHH
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--Cc-hhccCHHHHHHHHHHHHHHhcCCCCCCCcchhh---cCCHHH
Confidence 457889999988899988888888888876542 22 23466789999999999997643211 111222 555555
Q ss_pred HHHHHHHHHHh
Q 041949 156 LNKLELDFLFL 166 (225)
Q Consensus 156 LN~LE~~FL~l 166 (225)
+...=.+++.+
T Consensus 207 i~~~~~~i~~l 217 (235)
T 1zp2_A 207 VILCVQRIISI 217 (235)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 33
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=52.05 E-value=3 Score=37.22 Aligned_cols=92 Identities=7% Similarity=-0.039 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccccccCCC
Q 041949 72 EIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYFARVGGL 151 (225)
Q Consensus 72 ~~P~isi~~fl~rI~~~~~~s~~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~AkVgGi 151 (225)
..|.+...+|+.|+....+++..+.-.|.-.+++..+. . .....+..-+..+||.+|+...+. ..+.+..+++.||
T Consensus 229 ~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~--~-i~~GR~P~~IAAAaIylAa~l~g~-~~t~~eIa~v~~V 304 (345)
T 4bbr_M 229 NMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEI--K-EIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQV 304 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--c-cccCCChHHHHHHHHHHHHHHhCC-CCCHHHHHHHHCC
Confidence 36778888999999999999999888888888887663 2 234566778889999999997754 5688889999999
Q ss_pred CHHHHHHHHHHHHHhC
Q 041949 152 ETNELNKLELDFLFLM 167 (225)
Q Consensus 152 s~~eLN~LE~~FL~lL 167 (225)
+..-+..-=.+|+..+
T Consensus 305 se~TIr~rykel~~~~ 320 (345)
T 4bbr_M 305 TEGTIKSGYKILYEHR 320 (345)
T ss_dssp ----------------
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8766665444444433
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=46.25 E-value=79 Score=26.38 Aligned_cols=88 Identities=10% Similarity=0.104 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHcCCCchHHH----HHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhccc----CCccccc----
Q 041949 77 TIQSYLERIFRYTKAGPSVYV----VAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVED----LNYRNSY---- 144 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~~~~l----lAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD----~~~~N~~---- 144 (225)
+-.+|+.++++..+.+....- .|..+++. .... ...-.....-+-.+|+.+|.+.++- ...+...
T Consensus 156 tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~-~~~d--~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~ 232 (271)
T 2w96_A 156 TPHDFIEHFLSKMPEAEENKQIIRKHAQTFVAL-CATD--VKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRF 232 (271)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-HHTS--THHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHH
T ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-HHhh--hhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHH
Confidence 788999999999998876531 34444542 2222 2223456778888889999887742 2222222
Q ss_pred ccccCCCCHHHHHHHHHHHHHhC
Q 041949 145 FARVGGLETNELNKLELDFLFLM 167 (225)
Q Consensus 145 ~AkVgGis~~eLN~LE~~FL~lL 167 (225)
.+++.|++..++..-=.+++.++
T Consensus 233 l~~~~~v~~~~l~~c~~~i~~l~ 255 (271)
T 2w96_A 233 LSRVIKCDPDCLRACQEQIEALL 255 (271)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHH
Confidence 23356777776665555555443
No 35
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=23.56 E-value=3.2e+02 Score=22.80 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHcCCCc-----------hHHHHHHHHHHHHHhhCCCccccccchHHHHHHHHHHhhhhcccCCcccccc
Q 041949 77 TIQSYLERIFRYTKAGP-----------SVYVVAYVYIDRFCQANPGFRIHATNVHRLLITTIMVASKYVEDLNYRNSYF 145 (225)
Q Consensus 77 si~~fl~rI~~~~~~s~-----------~~~llAliYldRl~~~~~~~~l~~~n~hRL~ltsl~lAsK~~dD~~~~N~~~ 145 (225)
+..+|+.++.+..+++. ..+..+..+++.-.. ... .-.....-+-.+|+.+|.. .+.|
T Consensus 150 tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~-d~~--~l~~~PS~iAaAai~la~~--------~~~l 218 (283)
T 1w98_B 150 TIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVL-DVD--CLEFPYGILAASALYHFSS--------SELM 218 (283)
T ss_dssp CHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHH-SGG--GGGSCHHHHHHHHHHHTSC--------HHHH
T ss_pred CHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHh-hhh--hhcCCHHHHHHHHHHHHHC--------hHHH
Confidence 67888888888766543 233333334443322 112 2234556677777777752 5678
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 041949 146 ARVGGLETNELNKLELDFL 164 (225)
Q Consensus 146 AkVgGis~~eLN~LE~~FL 164 (225)
.++.|++..++..--.+++
T Consensus 219 ~~~tg~~~~~i~~c~~~l~ 237 (283)
T 1w98_B 219 QKVSGYQWCDIENCVKWMV 237 (283)
T ss_dssp HHHSCCCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHH
Confidence 8889999888776544443
Done!