Query 041950
Match_columns 307
No_of_seqs 240 out of 1621
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 12:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02164 sulfotransferase 100.0 1.2E-72 2.6E-77 514.6 27.8 303 1-305 36-339 (346)
2 KOG1584 Sulfotransferase [Gene 100.0 1.2E-71 2.6E-76 487.2 24.3 281 6-304 1-288 (297)
3 PF00685 Sulfotransfer_1: Sulf 100.0 5.4E-39 1.2E-43 285.4 12.1 248 44-305 1-266 (267)
4 KOG3988 Protein-tyrosine sulfo 99.0 7.2E-10 1.6E-14 96.3 5.2 91 129-231 175-266 (378)
5 PF13469 Sulfotransfer_3: Sulf 98.9 1.5E-09 3.2E-14 91.9 6.7 23 204-228 191-213 (215)
6 KOG3704 Heparan sulfate D-gluc 98.5 3.6E-07 7.8E-12 79.3 7.1 109 110-227 171-289 (360)
7 KOG3703 Heparan sulfate N-deac 98.3 5.7E-06 1.2E-10 78.3 12.0 96 130-227 686-791 (873)
8 PF09037 Sulphotransf: Stf0 su 98.3 4.5E-07 9.8E-12 79.9 3.6 93 130-229 112-219 (245)
9 COG4424 Uncharacterized protei 95.7 0.11 2.5E-06 43.8 9.6 51 199-251 188-238 (250)
10 KOG3922 Sulfotransferases [Pos 95.3 0.013 2.8E-07 52.2 2.8 100 46-153 80-182 (361)
11 PF06990 Gal-3-0_sulfotr: Gala 95.0 0.071 1.5E-06 50.5 6.9 107 41-154 64-171 (402)
12 PF03567 Sulfotransfer_2: Sulf 94.9 0.017 3.8E-07 50.2 2.5 26 44-69 8-33 (253)
13 KOG4157 beta-1,6-N-acetylgluco 79.0 0.62 1.4E-05 44.0 -0.0 167 38-230 198-368 (418)
14 KOG4651 Chondroitin 6-sulfotra 75.2 1.7 3.8E-05 39.9 1.8 32 42-73 79-110 (324)
15 cd00808 GluRS_core catalytic c 47.1 28 0.00061 30.6 4.0 53 175-229 12-69 (239)
16 PF07498 Rho_N: Rho terminatio 43.0 37 0.0008 21.1 3.0 36 207-242 1-36 (43)
17 PF07582 AP_endonuc_2_N: AP en 36.4 96 0.0021 20.5 4.3 30 196-225 13-42 (55)
18 PF13671 AAA_33: AAA domain; P 35.1 32 0.0007 26.6 2.4 20 47-66 2-22 (143)
19 PF01498 HTH_Tnp_Tc3_2: Transp 34.3 74 0.0016 21.7 3.9 62 207-302 7-71 (72)
20 COG1158 Rho Transcription term 30.7 46 0.001 30.9 2.8 27 43-69 172-199 (422)
21 PRK09767 hypothetical protein; 30.1 78 0.0017 24.5 3.6 31 197-227 84-114 (117)
22 PRK05710 glutamyl-Q tRNA(Asp) 29.7 73 0.0016 29.0 4.0 53 175-229 16-73 (299)
23 cd00807 GlnRS_core catalytic c 29.7 84 0.0018 27.6 4.2 54 175-230 12-70 (238)
24 PF13207 AAA_17: AAA domain; P 28.8 62 0.0014 24.2 3.0 22 47-68 2-23 (121)
25 cd00418 GlxRS_core catalytic c 26.6 1.1E+02 0.0025 26.6 4.5 53 175-229 12-69 (230)
26 cd01038 Endonuclease_DUF559 Do 26.1 92 0.002 23.4 3.4 26 198-223 82-107 (108)
27 PF08675 RNA_bind: RNA binding 25.4 44 0.00095 24.3 1.4 28 39-69 3-30 (87)
28 KOG1532 GTPase XAB1, interacts 24.7 81 0.0018 28.6 3.2 33 38-70 13-46 (366)
29 PF03484 B5: tRNA synthetase B 24.3 64 0.0014 22.2 2.1 28 216-248 8-35 (70)
30 PRK11524 putative methyltransf 23.9 71 0.0015 28.6 2.8 34 28-61 192-225 (284)
31 TIGR03715 KxYKxGKxW KxYKxGKxW 22.6 66 0.0014 18.1 1.5 14 53-66 7-20 (29)
32 PRK10363 cpxP periplasmic repr 22.2 64 0.0014 26.6 2.0 22 283-304 121-142 (166)
33 COG1102 Cmk Cytidylate kinase 22.1 90 0.002 25.9 2.8 23 47-69 3-25 (179)
34 PRK14895 gltX glutamyl-tRNA sy 21.6 1.4E+02 0.003 29.4 4.5 53 175-229 15-72 (513)
35 smart00874 B5 tRNA synthetase 21.6 93 0.002 21.1 2.5 27 216-247 8-34 (71)
36 PF14726 RTTN_N: Rotatin, an a 21.3 1.3E+02 0.0029 22.4 3.4 30 201-231 18-47 (98)
37 TIGR03838 queuosine_YadB gluta 21.3 1.4E+02 0.0031 26.7 4.2 54 175-230 11-69 (272)
38 PRK08118 topology modulation p 20.9 99 0.0022 25.2 2.9 24 46-69 3-26 (167)
39 PF11880 DUF3400: Domain of un 20.3 50 0.0011 20.8 0.7 28 44-71 10-39 (45)
No 1
>PLN02164 sulfotransferase
Probab=100.00 E-value=1.2e-72 Score=514.59 Aligned_cols=303 Identities=49% Similarity=0.921 Sum_probs=253.8
Q ss_pred CCcCCCCCCCCCCcc-ceEEccEEeccccchhhHHHhhhcCccCCCCEEEEcCCCccchHHHHHHHHHhcCCCCCCCCCC
Q 041950 1 LVASLPKGKGWMTEH-LVYYKGCWLTAYGALKGLMFIQDHFKAQPTDIFLATFPKCGTTWLKALIFATMNRSRYDFPSHP 79 (307)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~di~i~syPKSGtTWl~~il~~l~~~~~~~~~~~~ 79 (307)
|++|+|+++||...+ ++.|+|+++|. ...++++..+++|++|++|||||||||||||||++|+.+|+++++++...++
T Consensus 36 ~~~~lp~~~~~~~~~~~~~y~G~w~~~-~~~~~~~~~~~~f~~r~~DV~laSyPKsGTTWlq~iv~~i~~~~~~~~~~~p 114 (346)
T PLN02164 36 LIATLPHKKGWRPKEPLIEYGGHWWLQ-PLLEGLLHAQEFFQARPNDFLVCSYPKTGTTWLKALTFAIANRSRFDDSSNP 114 (346)
T ss_pred HHhhCCCCcCCCCCCCeEEECCEEech-hhhHHHHHHHHcCCCCCCCEEEEcCCCchhHHHHHHHHHHHcCCCcccccCc
Confidence 478999999999776 88999999998 4558999999999999999999999999999999999999988766554567
Q ss_pred CCCCCCCCccceeeecccCCCchhhhccCCCCceEeccCCCCCCCccccCCCceEEEEeeCccceeehhhhhhhhcCCCC
Q 041950 80 LLSASPHDCVPFLDAYIFQNNPVSSIHSLPSPRLFATHIPYDLLPNSMISSGSRFVYICRNPKDVLVSKWVFMNKARPKE 159 (307)
Q Consensus 80 ~~~~~~~~~~p~le~~~~~~~~~~~~~~~~~pr~iktH~~~~~lp~~~~~~~~K~I~i~RdPrDv~vS~~~~~~~~~~~~ 159 (307)
+....+++.+||||.........+.+.. ++||+++||+|++++|.++..+++|+|||+|||+|++||+|||........
T Consensus 115 l~~~~p~~~vP~lE~~~~~~~~~~~l~~-~~PRlikTHlp~~~lP~~i~~~~~KiIyv~RnPkDv~VS~yhf~~~~~~~~ 193 (346)
T PLN02164 115 LLKRNPHEFVPYIEIDFPFFPSVDVLKD-KGNTLFSTHIPYGLLPDSVVKSGCKMVYIWRDPKDTFISMWTFLHKERSQQ 193 (346)
T ss_pred ccccCccccCCceecccCCCCchhhhcc-CCCCeeEecCChhhCccccccCCceEEEEecCchhheeeHHHHHhhccccC
Confidence 7777788999999962111111334443 689999999999999999988999999999999999999999877654433
Q ss_pred CCCCCHHHHHHHHhcCCcccCchHHHHHHHHHHhccCCCeEEEEehhHhhcChHHHHHHHHHHcCCCCCccccccHHHHH
Q 041950 160 LPPLSLEDAFELFCKGVSHYGPFWDHVLGYWKASLESPEKILFLKYEEMMREPFVLLKRLAEFLGQPFSLEEESDGVVHE 239 (307)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEdL~~dp~~~l~~I~~FLg~~~~~~~~~~~~i~~ 239 (307)
....+|+++++.|+.|...+|+||+|+++||+.+...+++||+|+||||++||.++|++||+|||++++++++++..+++
T Consensus 194 ~~~~s~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~ee~~~~~v~~ 273 (346)
T PLN02164 194 GPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEEEEKGVVEK 273 (346)
T ss_pred CCCCCHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCCchhhcchHHHHH
Confidence 22368999999999998889999999999999863345689999999999999999999999999999987555667999
Q ss_pred HHHhcChhhhhhhhhccccccccccccccCCCcceeccccCCccccCcHHHHHHHHHHHHHHhccc
Q 041950 240 IIRLCSFENLSSLEVNKTKVKRFSNQLVIDNCDFFRKGRVGDWENHLTKEMTERLDQITEEKLEMV 305 (307)
Q Consensus 240 iv~~~sf~~mk~~~~~~~~~~~~~~~~~~~~~~~~RkG~vG~Wk~~fs~e~~~~~~~~~~e~l~~~ 305 (307)
|+++|||++||+++.|+.+..............|+|||++|||||+||+||.++|+++++++|+|.
T Consensus 274 ive~~SFe~Mk~~e~n~~~~~~~~~~~~~~~~~FfRKG~vGdWkn~lt~e~~~r~d~~~~ekl~gs 339 (346)
T PLN02164 274 VVKLCSFETLKNLEANKGEKDREDRPAVYANSAYFRKGKVGDWQNYLTPEMAARIDGLMEEKFKGT 339 (346)
T ss_pred HHHHCCHHHHhhhHhhccccccccccccccCcceeeccCCCCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999877655421100000123457999999999999999999999999999999873
No 2
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=100.00 E-value=1.2e-71 Score=487.18 Aligned_cols=281 Identities=49% Similarity=0.885 Sum_probs=238.4
Q ss_pred CCCCCCCC-ccceEEccEEeccccchhhHHHhhhcCccCCCCEEEEcCCCccchHHHHHHHHHhcCCCCCCCC-CCCCCC
Q 041950 6 PKGKGWMT-EHLVYYKGCWLTAYGALKGLMFIQDHFKAQPTDIFLATFPKCGTTWLKALIFATMNRSRYDFPS-HPLLSA 83 (307)
Q Consensus 6 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~di~i~syPKSGtTWl~~il~~l~~~~~~~~~~-~~~~~~ 83 (307)
+++++|.. ..+..|+|+++++ .+.+......++|++|+|||+||||||||||||++|+.+|+++++.+... +|+...
T Consensus 1 p~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~Fq~r~dDiiiaTyPKsGTTWlkel~~~i~~~~d~~~~~~~pL~~~ 79 (297)
T KOG1584|consen 1 PSEKGSRGRFKLVEYQGCWYPP-KFLQALLRVQKHFQARPDDVIIATYPKSGTTWLQELTFLILNRGDFEKAKRHPLLER 79 (297)
T ss_pred CCccCcCCCcCeEEECCEEecH-HHHHHHHHHHhcCCCCCCCEEEEecCCCchHHHHHHHHHHHcCCCcccccCCchhhc
Confidence 46789997 7788899999998 66677777767799999999999999999999999999999998766543 666666
Q ss_pred CCCCccceeeecccCCCchhhhccCCCCceEeccCCCCCCCccccCCCceEEEEeeCccceeehhhhhhhhcCCCCCCCC
Q 041950 84 SPHDCVPFLDAYIFQNNPVSSIHSLPSPRLFATHIPYDLLPNSMISSGSRFVYICRNPKDVLVSKWVFMNKARPKELPPL 163 (307)
Q Consensus 84 ~~~~~~p~le~~~~~~~~~~~~~~~~~pr~iktH~~~~~lp~~~~~~~~K~I~i~RdPrDv~vS~~~~~~~~~~~~~~~~ 163 (307)
+|+..+|++|.... +...+..+++||+++||+|+++||+++++.++|+||+.|||+|++||+|||.+...... .++
T Consensus 80 ~P~~e~p~~e~~~~---~~~~~~~l~SPRl~kTHlP~~lLp~s~~~~~cKvVYv~RNpKD~~VSy~hf~~~~~~~~-~~~ 155 (297)
T KOG1584|consen 80 NPHLEVPFLELQLY---GNDSAPDLPSPRLFKTHLPFQLLPESLKESKCKVVYVCRNPKDVLVSYYHFNRMLKTQP-GPG 155 (297)
T ss_pred CCceeecccccccc---cccccccCCCCcceeccCChhhcchhhhcCCCcEEEEecCccceeeeHHHHHhhhccCC-CCC
Confidence 66666666554111 13445667899999999999999999999999999999999999999999998776654 356
Q ss_pred CHHHHHHHHhcCCcccCchHHHHHHHHHHhccCCCeEEEEehhHhhcChHHHHHHHHHHcCCCCCccccccHHHHHHHHh
Q 041950 164 SLEDAFELFCKGVSHYGPFWDHVLGYWKASLESPEKILFLKYEEMMREPFVLLKRLAEFLGQPFSLEEESDGVVHEIIRL 243 (307)
Q Consensus 164 ~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEdL~~dp~~~l~~I~~FLg~~~~~~~~~~~~i~~iv~~ 243 (307)
+|+++++.||+|.+.+|+||+|+++||+.. +++|||+++||||++||..+|++||+|||.++++++ +++++.+
T Consensus 156 ~~e~~fe~F~~G~~~~Gp~~dHVl~~W~~~--~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee-----~~~~~~~ 228 (297)
T KOG1584|consen 156 TFEEFFESFCNGVVPYGPWWDHVLGYWELE--DPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEE-----EDKGVVH 228 (297)
T ss_pred cHHHHHHHHhCCcCCcCChHHHHHHHHHhc--CCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHH-----HhhhhHH
Confidence 799999999999999999999999999976 889999999999999999999999999999999998 7777777
Q ss_pred cChhhhhhh-----hhccccccccccccccCCCcceeccccCCccccCcHHHHHHHHHHHHHHhcc
Q 041950 244 CSFENLSSL-----EVNKTKVKRFSNQLVIDNCDFFRKGRVGDWENHLTKEMTERLDQITEEKLEM 304 (307)
Q Consensus 244 ~sf~~mk~~-----~~~~~~~~~~~~~~~~~~~~~~RkG~vG~Wk~~fs~e~~~~~~~~~~e~l~~ 304 (307)
.+|+.|+.+ +.+..+. .....+.|+|||.+||||||||++|+++||+.++++|++
T Consensus 229 ~~~~~~~~n~l~nle~n~~~~------~~~~~~~F~RKG~vGDWKn~~T~~~~ekfD~~~eekm~g 288 (297)
T KOG1584|consen 229 LSFELCSLNPLSNLEVNKTEK------LLHKISPFFRKGEVGDWKNYLTPEMNEKFDKIYEEKMEG 288 (297)
T ss_pred HHHHHHhhccccCceeccccc------ccccchhhhcCCCcccccccCCHHHHHHHHHHHHHHhcC
Confidence 777777653 3333322 122337899999999999999999999999999999998
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=100.00 E-value=5.4e-39 Score=285.39 Aligned_cols=248 Identities=31% Similarity=0.617 Sum_probs=178.2
Q ss_pred CCCEEEEcCCCccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccceeeecc-----------------cCCCchhhhc
Q 041950 44 PTDIFLATFPKCGTTWLKALIFATMNRSRYDFPSHPLLSASPHDCVPFLDAYI-----------------FQNNPVSSIH 106 (307)
Q Consensus 44 ~~di~i~syPKSGtTWl~~il~~l~~~~~~~~~~~~~~~~~~~~~~p~le~~~-----------------~~~~~~~~~~ 106 (307)
+.+|||+|+||||||||.++|..............+..... ....|+++.+. ........+.
T Consensus 1 ~~~i~I~g~prSGTt~l~~lL~~h~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (267)
T PF00685_consen 1 PPPIFIVGAPRSGTTWLRELLNSHPDIFSFSPFKEPHFFNN-RDYSPFLEWYRDFFPFRIKPQEHIPSFSHVESKIVRLR 79 (267)
T ss_dssp TTSEEEEESTTSSHHHHHHHHHHHHTTTETHHHTSSHHTTT-HHHSTBTTHHHHTSHEEGTTTEEEGGCTTTETHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHhCcccccccccccccccch-hhhhhhhhhhhcccccccccccccccccccchhHHHHh
Confidence 57999999999999999999999754332200000000001 22334443210 0000123345
Q ss_pred cCCCCceEeccCCCCCCCccccCCCceEEEEeeCccceeehhhhhhhhcCCCCCCCC-CHHHHHHHHhcCCcccCchHHH
Q 041950 107 SLPSPRLFATHIPYDLLPNSMISSGSRFVYICRNPKDVLVSKWVFMNKARPKELPPL-SLEDAFELFCKGVSHYGPFWDH 185 (307)
Q Consensus 107 ~~~~pr~iktH~~~~~lp~~~~~~~~K~I~i~RdPrDv~vS~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~ 185 (307)
..+.+++++||+++..++..+..+++|+|+|+|||+|+++|.+++........ ... .++++++.++.....++.|+++
T Consensus 80 ~~~~~~~~~~H~~~~~~~~~~~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (267)
T PF00685_consen 80 DLPSPRFIKTHLPLDLLPKKLLFPNAKIIYIVRDPRDVIVSRYKHSWRSNPFS-DPGQRFEEFVDWFLQPRLLYGSWADH 158 (267)
T ss_dssp CSCSSEEEEE-S-GGGSHHHHHHTTEEEEEEE--HHHHHHHHHHHHHHBTTST-THHSHHHHHHHHHHTTHSTTSCHHHH
T ss_pred hccCchhhhhccccccccccccccccccceecccccchhHHHHHHHHhccccc-ccchhhhhhhhhhhcccccccccccc
Confidence 56789999999998877655446899999999999999999998887655322 112 3778888887766678899999
Q ss_pred HHHHHHHhccCCCeEEEEehhHhhcChHHHHHHHHHHcCCCCCccccccHHHHHHHHhcChhhhhhhhhccccccccccc
Q 041950 186 VLGYWKASLESPEKILFLKYEEMMREPFVLLKRLAEFLGQPFSLEEESDGVVHEIIRLCSFENLSSLEVNKTKVKRFSNQ 265 (307)
Q Consensus 186 ~~~~w~~~~~~~~~vl~v~YEdL~~dp~~~l~~I~~FLg~~~~~~~~~~~~i~~iv~~~sf~~mk~~~~~~~~~~~~~~~ 265 (307)
+..||... ..+++++|+||||+.||.+++++|++|||++++++. ++.++++++++.|+..........
T Consensus 159 ~~~~~~~~--~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----- 226 (267)
T PF00685_consen 159 LKSWLSSF--DRDNVLIIRYEDLVADPEKELKRICDFLGLPFSDEP-----LDKIVEKSSFDNMRSKEARNKSKL----- 226 (267)
T ss_dssp HHHHHHHT--TTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS--HHH-----HHHHHHHTSHHHHHHETTTSSTTS-----
T ss_pred ccchhhhh--ccchhhhhcchhhhhhhhHHHHHHHHHHhhccchhh-----hHHHHHhhhhhhhccccccccccc-----
Confidence 99999866 778999999999999999999999999999999887 999999999999997543221100
Q ss_pred cccCCCcceeccccCCccccCcHHHHHHHHHHHHHHhccc
Q 041950 266 LVIDNCDFFRKGRVGDWENHLTKEMTERLDQITEEKLEMV 305 (307)
Q Consensus 266 ~~~~~~~~~RkG~vG~Wk~~fs~e~~~~~~~~~~e~l~~~ 305 (307)
.......++|+|.+|+||++||+++++.|+++|++.|..+
T Consensus 227 ~~~~~~~~~~~~~~~~W~~~l~~e~~~~i~~~~~~~m~~~ 266 (267)
T PF00685_consen 227 SDGSSSRFFRKGKSGRWKNELSPEQIDRIERICGDAMREL 266 (267)
T ss_dssp CTTTTSTSSEET-STGGGGTSBHHHHHHHHHHHHHHHTTS
T ss_pred ccCCcceeeeecccCcccccCCHHHHHHHHHHHHHHHccC
Confidence 0113467899999999999999999999999999999753
No 4
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.2e-10 Score=96.27 Aligned_cols=91 Identities=16% Similarity=0.229 Sum_probs=58.2
Q ss_pred CCCceEEEEeeCccceeehhhhhhhhcCCCCCCCCCHHHHHHHHhcCCcccCchHHHHHHHHHH-hccCCCeEEEEehhH
Q 041950 129 SSGSRFVYICRNPKDVLVSKWVFMNKARPKELPPLSLEDAFELFCKGVSHYGPFWDHVLGYWKA-SLESPEKILFLKYEE 207 (307)
Q Consensus 129 ~~~~K~I~i~RdPrDv~vS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~-~~~~~~~vl~v~YEd 207 (307)
.||+|+++++||.|.++-|... ++..... -++.++.+-+. .|-+.+.--..+ .-.+.++.+.|.||.
T Consensus 175 fPNAKfllMvRDgRAtVhSmIs--RKVtIaG---fdlssyr~c~t-------kWN~aie~M~~QC~~vg~~~Cl~VyYEq 242 (378)
T KOG3988|consen 175 FPNAKFLLMVRDGRATVHSMIS--RKVTIAG---FDLSSYRQCMT-------KWNQAIEVMYFQCMEVGKKKCLKVYYEQ 242 (378)
T ss_pred CCCceEEEEEecchHHHHHHHh--ccceecc---ccchHHHHHHH-------HHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 4899999999999999988753 2222111 12333322111 011111110000 001456899999999
Q ss_pred hhcChHHHHHHHHHHcCCCCCccc
Q 041950 208 MMREPFVLLKRLAEFLGQPFSLEE 231 (307)
Q Consensus 208 L~~dp~~~l~~I~~FLg~~~~~~~ 231 (307)
|+..|++.+++|.+||+++++++.
T Consensus 243 LVlhPe~~mr~Il~FLdipw~d~v 266 (378)
T KOG3988|consen 243 LVLHPEEWMRRILKFLDIPWSDAV 266 (378)
T ss_pred HHhCHHHHHHHHHHHhCCCcHHHH
Confidence 999999999999999999998764
No 5
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=98.95 E-value=1.5e-09 Score=91.91 Aligned_cols=23 Identities=26% Similarity=0.665 Sum_probs=18.1
Q ss_pred ehhHhhcChHHHHHHHHHHcCCCCC
Q 041950 204 KYEEMMREPFVLLKRLAEFLGQPFS 228 (307)
Q Consensus 204 ~YEdL~~dp~~~l~~I~~FLg~~~~ 228 (307)
+||||++||.+++++||+ + ++++
T Consensus 191 ~yedl~~~p~~~l~~i~~-~-~~l~ 213 (215)
T PF13469_consen 191 RYEDLVADPEATLRRICA-L-LELT 213 (215)
T ss_dssp EHHHHHHSHHHHHHHHHH-C-----
T ss_pred CHHHHHHCHHHHHHHHHH-h-hCCc
Confidence 679999999999999999 6 7765
No 6
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.6e-07 Score=79.27 Aligned_cols=109 Identities=20% Similarity=0.365 Sum_probs=75.7
Q ss_pred CCceEeccCCCCCCCccc--cCCCceEEEEeeCccceeehhhhhhhhcCCCCCCCCCHHHHH-HHHhcC-------Cccc
Q 041950 110 SPRLFATHIPYDLLPNSM--ISSGSRFVYICRNPKDVLVSKWVFMNKARPKELPPLSLEDAF-ELFCKG-------VSHY 179 (307)
Q Consensus 110 ~pr~iktH~~~~~lp~~~--~~~~~K~I~i~RdPrDv~vS~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~ 179 (307)
.|..+.|.. .|+.+ .+++.|.|+|+|||.-+++|-|......... -.+|+... .+--.| .+..
T Consensus 171 TPsYFvt~e----~P~Rv~~M~pd~KLivvvR~PvtRaiSDyTQt~sk~~~---~P~fe~lafkn~~~g~id~~w~ai~i 243 (360)
T KOG3704|consen 171 TPSYFVTRE----VPKRVYSMNPDTKLIVVVRDPVTRAISDYTQTLSKKPD---IPTFEVLAFKNRTAGLIDTSWKAIRI 243 (360)
T ss_pred Cchhhcccc----cchHHHhcCCCceEEEEEcCchhhhHHHHHHHHhcCCC---CCceeeeeeecCccceeecchhhhhh
Confidence 355555533 34333 2578999999999999999999543322211 12333210 100001 1235
Q ss_pred CchHHHHHHHHHHhccCCCeEEEEehhHhhcChHHHHHHHHHHcCCCC
Q 041950 180 GPFWDHVLGYWKASLESPEKILFLKYEEMMREPFVLLKRLAEFLGQPF 227 (307)
Q Consensus 180 g~~~~~~~~~w~~~~~~~~~vl~v~YEdL~~dp~~~l~~I~~FLg~~~ 227 (307)
|-|..|+..|+..+ +-.++|+|.=|.|+.||..++.++-+|||+.-
T Consensus 244 glY~~Hle~WL~yF--pL~q~lfVsGerli~dPa~E~~rVqdFLgLkr 289 (360)
T KOG3704|consen 244 GLYAVHLENWLRYF--PLRQILFVSGERLISDPAGELGRVQDFLGLKR 289 (360)
T ss_pred hHHHHHHHHHHHhC--chhheEEecCceeecCcHHHHHHHHHHhcccc
Confidence 67889999999888 77899999999999999999999999999974
No 7
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5.7e-06 Score=78.33 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=70.4
Q ss_pred CCceEEEEeeCccceeehhhhhhhhcCCCCC----------CCCCHHHHHHHHhcCCcccCchHHHHHHHHHHhccCCCe
Q 041950 130 SGSRFVYICRNPKDVLVSKWVFMNKARPKEL----------PPLSLEDAFELFCKGVSHYGPFWDHVLGYWKASLESPEK 199 (307)
Q Consensus 130 ~~~K~I~i~RdPrDv~vS~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~ 199 (307)
|.||||.|+-||-|++.|+|.|.+....... ...+-...++..-+..+.-|-|..|+..|.... +..+
T Consensus 686 P~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~lq~RClvpG~Ya~HlerWL~y~--~~~Q 763 (873)
T KOG3703|consen 686 PHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKALQNRCLVPGWYATHLERWLTYF--PAQQ 763 (873)
T ss_pred CcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHHHHHhccCcchHHHHHHHHHHhC--Cccc
Confidence 6899999999999999999988765432110 001111112221111233466889999999887 7789
Q ss_pred EEEEehhHhhcChHHHHHHHHHHcCCCC
Q 041950 200 ILFLKYEEMMREPFVLLKRLAEFLGQPF 227 (307)
Q Consensus 200 vl~v~YEdL~~dp~~~l~~I~~FLg~~~ 227 (307)
+++|.=++|..||..++..+-.|||+..
T Consensus 764 lliiDg~qLr~~Pa~vm~~~qkfLgv~p 791 (873)
T KOG3703|consen 764 LLIIDGQQLRTNPATVMNELQKFLGVTP 791 (873)
T ss_pred EEEEccHHhccCcHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999943
No 8
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=98.31 E-value=4.5e-07 Score=79.91 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=47.9
Q ss_pred CCceEEEEee-CccceeehhhhhhhhcCCCCC----C----------CCCHHHHHHHHhcCCcccCchHHHHHHHHHHhc
Q 041950 130 SGSRFVYICR-NPKDVLVSKWVFMNKARPKEL----P----------PLSLEDAFELFCKGVSHYGPFWDHVLGYWKASL 194 (307)
Q Consensus 130 ~~~K~I~i~R-dPrDv~vS~~~~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~ 194 (307)
++.++||+.| |...-+||...-......... . .-++++... .+.- + ...-.....|.+.
T Consensus 112 ~~~~~I~L~R~d~l~QAvS~~~A~qtg~w~~~~~~~~~~r~~~~~~~~yd~~~i~~-~i~~-i--~~~~~~w~~~f~~-- 185 (245)
T PF09037_consen 112 GDVKFIHLRRRDLLRQAVSLWRARQTGVWHQHADGTRDERVSPPRKPRYDFEEIAH-LIDR-I--EDQEAFWRNWFAR-- 185 (245)
T ss_dssp TS-EEEEEE-S-HHHHHHHHHHHHHHS-----------TT----------HHHHHH-HHHH-H--HHHHHHHHHHHHH--
T ss_pred CCeEEEEEEeCCHHHHHHHHHHHHhCCCcccCCCCCccccccccccceeCHHHHHH-HHHH-H--HHHHHHHHHHHHH--
Confidence 4599999997 999999999854432211110 0 001111111 1100 0 0000111222222
Q ss_pred cCCCeEEEEehhHhhcChHHHHHHHHHHcCCCCCc
Q 041950 195 ESPEKILFLKYEEMMREPFVLLKRLAEFLGQPFSL 229 (307)
Q Consensus 195 ~~~~~vl~v~YEdL~~dp~~~l~~I~~FLg~~~~~ 229 (307)
..-+-+.|.||||.+||.+++.+|++|||++...
T Consensus 186 -~~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 186 -HGIEPLEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp -TT---EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred -cCCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 2334578999999999999999999999997654
No 9
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.11 Score=43.78 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=37.7
Q ss_pred eEEEEehhHhhcChHHHHHHHHHHcCCCCCccccccHHHHHHHHhcChhhhhh
Q 041950 199 KILFLKYEEMMREPFVLLKRLAEFLGQPFSLEEESDGVVHEIIRLCSFENLSS 251 (307)
Q Consensus 199 ~vl~v~YEdL~~dp~~~l~~I~~FLg~~~~~~~~~~~~i~~iv~~~sf~~mk~ 251 (307)
.-+-|-||.|-+||.+.+..+|+.||++...+-+ ..+.+-.+..|-+.|..
T Consensus 188 ep~riaYe~Lsadp~aava~~~ealgv~~p~a~~--p~~a~qad~~s~eWv~R 238 (250)
T COG4424 188 EPIRIAYEVLSADPTAAVASVLEALGVDPPLAPA--PMLARQADQRSDEWVDR 238 (250)
T ss_pred cHHHHhHHHHccCcHHHHHHHHHHhCCCCCCCcC--chHHHhhhhhhHHHHHH
Confidence 3456779999999999999999999998764421 12555666666666654
No 10
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.013 Score=52.18 Aligned_cols=100 Identities=16% Similarity=0.306 Sum_probs=57.2
Q ss_pred CEEEEcCCCccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccceeeecccCC-Cchhhhc--cCCCCceEeccCCCCC
Q 041950 46 DIFLATFPKCGTTWLKALIFATMNRSRYDFPSHPLLSASPHDCVPFLDAYIFQN-NPVSSIH--SLPSPRLFATHIPYDL 122 (307)
Q Consensus 46 di~i~syPKSGtTWl~~il~~l~~~~~~~~~~~~~~~~~~~~~~p~le~~~~~~-~~~~~~~--~~~~pr~iktH~~~~~ 122 (307)
-|+-.--||||+|=...|+.-|.....+.. ...+.....+-+-. ++. .-..++. ..+.|.++.-|..+--
T Consensus 80 vViyNRVpKtGStTf~niaydL~ekn~F~v-----lh~nvtkn~~vlsl--~dQ~qfvknIssw~e~~P~~yhgHV~Fld 152 (361)
T KOG3922|consen 80 VVIYNRVPKTGSTTFVNIAYDLSEKNGFHV-----LHINVTKNETVLSL--PDQQQFVKNISSWTEMKPALYHGHVAFLD 152 (361)
T ss_pred EEEEecCCCccchhHHHHHHHHHhccCceE-----EEeeccccceeecc--HHHHHHHHhhccccccCcceeeeeeeeee
Confidence 366778899999988888887765433321 00111100111110 000 0011222 2357899999987632
Q ss_pred CCccccCCCceEEEEeeCccceeehhhhhhh
Q 041950 123 LPNSMISSGSRFVYICRNPKDVLVSKWVFMN 153 (307)
Q Consensus 123 lp~~~~~~~~K~I~i~RdPrDv~vS~~~~~~ 153 (307)
+.+ +--++.-+|-|+|||.++++|+|+|.+
T Consensus 153 Fsk-Fgi~~PIYINvIRdPveRllS~yyflR 182 (361)
T KOG3922|consen 153 FSK-FGIARPIYINVIRDPVERLLSYYYFLR 182 (361)
T ss_pred hhh-hCCCCceEEeeeccHHHHHHhHhhhhc
Confidence 222 111346788899999999999998875
No 11
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=94.99 E-value=0.071 Score=50.48 Aligned_cols=107 Identities=13% Similarity=0.231 Sum_probs=57.2
Q ss_pred ccCCCCEEEEcCCCccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccceeeecccCCCchhhhccCCCCceEeccCCC
Q 041950 41 KAQPTDIFLATFPKCGTTWLKALIFATMNRSRYDFPSHPLLSASPHDCVPFLDAYIFQNNPVSSIHSLPSPRLFATHIPY 120 (307)
Q Consensus 41 ~~r~~di~i~syPKSGtTWl~~il~~l~~~~~~~~~~~~~~~~~~~~~~p~le~~~~~~~~~~~~~~~~~pr~iktH~~~ 120 (307)
+++.+=||| =-+|||+|=++.|+.......+.... .|... ...-..|..- .... ...........++..|+.|
T Consensus 64 ~P~~nIvFl-KTHKTgSSTv~nIL~Rfg~~~nL~~a-lP~~~-~~~~~~P~~f--~~~~--v~~~~~~~~~nIl~~H~rf 136 (402)
T PF06990_consen 64 QPKTNIVFL-KTHKTGSSTVQNILFRFGEKHNLTFA-LPRGG-RNQFGYPAPF--NARF--VEGYPPGGRFNILCHHMRF 136 (402)
T ss_pred cccceEEEE-ecCCcccHHHHHHHHHHHHHcCCEEe-cCCCC-CCCCCCCCcC--Cccc--cccCCCCCCceEEeehhcc
Confidence 444444455 45599999999999876432211110 11000 0000111110 0000 1111112345688889988
Q ss_pred CCC-CccccCCCceEEEEeeCccceeehhhhhhhh
Q 041950 121 DLL-PNSMISSGSRFVYICRNPKDVLVSKWVFMNK 154 (307)
Q Consensus 121 ~~l-p~~~~~~~~K~I~i~RdPrDv~vS~~~~~~~ 154 (307)
+.- -..+.-+++++|-|+|||...+.|.|+|...
T Consensus 137 n~~~~~~lmP~dt~yiTILRdP~~~feS~f~Yy~~ 171 (402)
T PF06990_consen 137 NRPEVRKLMPPDTKYITILRDPVSHFESSFNYYKR 171 (402)
T ss_pred CHHHHHHhCCCCCeEEEEEcCHHHHHHhHHHHhhc
Confidence 521 1112225789999999999999999988764
No 12
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=94.93 E-value=0.017 Score=50.16 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCccchHHHHHHHHHhc
Q 041950 44 PTDIFLATFPKCGTTWLKALIFATMN 69 (307)
Q Consensus 44 ~~di~i~syPKSGtTWl~~il~~l~~ 69 (307)
...|+.+--||||.|=+..++..+..
T Consensus 8 ~~~i~f~~ipK~g~Ts~~~~l~~~~~ 33 (253)
T PF03567_consen 8 KHKIIFCHIPKTGGTSLKSILRRLYG 33 (253)
T ss_dssp --EEEE---SSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhh
Confidence 44678899999999999999888765
No 13
>KOG4157 consensus beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=79.02 E-value=0.62 Score=44.04 Aligned_cols=167 Identities=18% Similarity=0.247 Sum_probs=85.6
Q ss_pred hcCccCCCCEEEEcCCCccchHHHHHHHHHhcC---CCCCCCCCCCCCCCCCCccceeeecccCCCchhhhccCCCCceE
Q 041950 38 DHFKAQPTDIFLATFPKCGTTWLKALIFATMNR---SRYDFPSHPLLSASPHDCVPFLDAYIFQNNPVSSIHSLPSPRLF 114 (307)
Q Consensus 38 ~~~~~r~~di~i~syPKSGtTWl~~il~~l~~~---~~~~~~~~~~~~~~~~~~~p~le~~~~~~~~~~~~~~~~~pr~i 114 (307)
..+.+-...+-..|+|+.|+||++.++..+..- ..+.. ..+ .....+- ..+......-..+
T Consensus 198 ~~~~p~ss~~~~st~~~~~~t~~~~~~~tat~~~t~s~y~~--g~~----~~~~~~~----------~~n~~~~~~~~~~ 261 (418)
T KOG4157|consen 198 RSSLPSSTAVPLSSFPGLGNTWARYLIQQATGFLTGSIYKD--GGL----LKTGFPG----------ERNHVCNSNVSLV 261 (418)
T ss_pred cccCCCCCcccceeeeecccceeeeeeeceeeEeeeeEEec--ccc----ccccccc----------cccccccceeeee
Confidence 344555555888999999999999887765421 00000 000 0000000 0001111234566
Q ss_pred eccCCCCCCCccccCCCceEEEEeeCccceeehhhhhhhhcCCCCCCCCCHHH-HHHHHhcCCcccCchHHHHHHHHHHh
Q 041950 115 ATHIPYDLLPNSMISSGSRFVYICRNPKDVLVSKWVFMNKARPKELPPLSLED-AFELFCKGVSHYGPFWDHVLGYWKAS 193 (307)
Q Consensus 115 ktH~~~~~lp~~~~~~~~K~I~i~RdPrDv~vS~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~w~~~ 193 (307)
++|......- ......|.++|+|.--++..+...............+.. .+..+..+ ....|-.|... |...
T Consensus 262 ~~~~~~~~v~----~~~~~~i~ll~~~~~~~~~~~~r~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~ss~~~~-w~~~ 334 (418)
T KOG4157|consen 262 KTGEWGSVVG----AVFSAAILLLRDPEKAYIAEFNRKSGGHIGFASPKSYKSKKWPQFVSN--KLSGWSSHTLS-WARK 334 (418)
T ss_pred ecceecceee----ecchhheeeeccccccccccccccccccccccccchhccccccccccC--CCCCccccchh-hhcc
Confidence 7777654111 123456777888876555554322111110000011110 01111111 11123345556 4332
Q ss_pred ccCCCeEEEEehhHhhcChHHHHHHHHHHcCCCCCcc
Q 041950 194 LESPEKILFLKYEEMMREPFVLLKRLAEFLGQPFSLE 230 (307)
Q Consensus 194 ~~~~~~vl~v~YEdL~~dp~~~l~~I~~FLg~~~~~~ 230 (307)
...++.++||++..++...+..+..|+|++..++
T Consensus 335 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (418)
T KOG4157|consen 335 ---GTGSLVVFYDDLVHPTVAPLRLIVDFLQHPVPES 368 (418)
T ss_pred ---cccceeEEeecccccccccccccccccCcccccc
Confidence 2456999999999999999999999999877654
No 14
>KOG4651 consensus Chondroitin 6-sulfotransferase and related sulfotransferases [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=75.17 E-value=1.7 Score=39.92 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=25.4
Q ss_pred cCCCCEEEEcCCCccchHHHHHHHHHhcCCCC
Q 041950 42 AQPTDIFLATFPKCGTTWLKALIFATMNRSRY 73 (307)
Q Consensus 42 ~r~~di~i~syPKSGtTWl~~il~~l~~~~~~ 73 (307)
.-+-.+..|.-|||++|.+..|...|.+.+.+
T Consensus 79 apk~kl~~C~I~Ksms~l~~nimc~L~n~~~y 110 (324)
T KOG4651|consen 79 APKYKLIYCEIPKSMSTLWTNIMCLLYNETQY 110 (324)
T ss_pred CCCCceEEEeecccHhhhhhhhheeEeChhhh
Confidence 34556889999999999999998887765544
No 15
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=47.12 E-value=28 Score=30.57 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=38.0
Q ss_pred CCcccCchHHHHHHHHHHhccCCCeEEEEehhHhhc--C---hHHHHHHHHHHcCCCCCc
Q 041950 175 GVSHYGPFWDHVLGYWKASLESPEKILFLKYEEMMR--E---PFVLLKRLAEFLGQPFSL 229 (307)
Q Consensus 175 ~~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEdL~~--d---p~~~l~~I~~FLg~~~~~ 229 (307)
|....|.+..-+.+|...+ ...-.+++|.||.-. . -...+.+.++.||+.+++
T Consensus 12 G~LHlG~~~~al~n~l~ar--~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~ 69 (239)
T cd00808 12 GFLHIGGARTALFNYLFAR--KHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDE 69 (239)
T ss_pred CcccHHHHHHHHHHHHHHH--HcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCc
Confidence 4455677777888888777 344578999999622 2 235667778899999986
No 16
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=42.97 E-value=37 Score=21.07 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=23.9
Q ss_pred HhhcChHHHHHHHHHHcCCCCCccccccHHHHHHHH
Q 041950 207 EMMREPFVLLKRLAEFLGQPFSLEEESDGVVHEIIR 242 (307)
Q Consensus 207 dL~~dp~~~l~~I~~FLg~~~~~~~~~~~~i~~iv~ 242 (307)
||..-+..+++.||.-+|++-....+...+|.+|++
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~ 36 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILK 36 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHH
Confidence 567778899999999999976554444445666654
No 17
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=36.44 E-value=96 Score=20.52 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=21.8
Q ss_pred CCCeEEEEehhHhhcChHHHHHHHHHHcCC
Q 041950 196 SPEKILFLKYEEMMREPFVLLKRLAEFLGQ 225 (307)
Q Consensus 196 ~~~~vl~v~YEdL~~dp~~~l~~I~~FLg~ 225 (307)
+-+-.+.|-+||...++..-+++-++||--
T Consensus 13 GYdG~~siE~ED~~~~~~~G~~~a~~~lr~ 42 (55)
T PF07582_consen 13 GYDGWLSIEHEDALMDPEEGAREAAAFLRK 42 (55)
T ss_dssp T--SEEEE---STTTSHHHHHHHHHHHHHT
T ss_pred CCCceEEEEeecCCCCHHHHHHHHHHHHHH
Confidence 345688999999999999999999999844
No 18
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=35.15 E-value=32 Score=26.65 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=15.4
Q ss_pred EEEEcCCCccc-hHHHHHHHH
Q 041950 47 IFLATFPKCGT-TWLKALIFA 66 (307)
Q Consensus 47 i~i~syPKSGt-TWl~~il~~ 66 (307)
|++++.|-||- ||.+++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 68999999995 577666544
No 19
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=34.33 E-value=74 Score=21.69 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=29.2
Q ss_pred HhhcChHHHHHHHHHHc---CCCCCccccccHHHHHHHHhcChhhhhhhhhccccccccccccccCCCcceeccccCCcc
Q 041950 207 EMMREPFVLLKRLAEFL---GQPFSLEEESDGVVHEIIRLCSFENLSSLEVNKTKVKRFSNQLVIDNCDFFRKGRVGDWE 283 (307)
Q Consensus 207 dL~~dp~~~l~~I~~FL---g~~~~~~~~~~~~i~~iv~~~sf~~mk~~~~~~~~~~~~~~~~~~~~~~~~RkG~vG~Wk 283 (307)
....||......|..-| |..++... |.+++....| ++..-.|+
T Consensus 7 ~v~~~p~~s~~~i~~~l~~~~~~vS~~T-----I~r~L~~~g~-----------------------------~~~~~~~k 52 (72)
T PF01498_consen 7 MVRRNPRISAREIAQELQEAGISVSKST-----IRRRLREAGL-----------------------------KKRKARKK 52 (72)
T ss_dssp ---------HHHHHHHT---T--S-HHH-----HHHHHHHT-E-----------------------------EEETTEEE
T ss_pred HHHHCCCCCHHHHHHHHHHccCCcCHHH-----HHHHHHHcCc-----------------------------cccccccC
Confidence 34678889999999999 99998887 7766532111 23455667
Q ss_pred ccCcHHHHHHHHHHHHHHh
Q 041950 284 NHLTKEMTERLDQITEEKL 302 (307)
Q Consensus 284 ~~fs~e~~~~~~~~~~e~l 302 (307)
-.||+.+...=-+++.+++
T Consensus 53 P~Ls~~~~~~Rl~fA~~h~ 71 (72)
T PF01498_consen 53 PFLSPKHKKKRLEFAKEHL 71 (72)
T ss_dssp ES--HHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHhhhcc
Confidence 7888888766555555543
No 20
>COG1158 Rho Transcription termination factor [Transcription]
Probab=30.75 E-value=46 Score=30.89 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=19.5
Q ss_pred CCCCEEEEcCCCccch-HHHHHHHHHhc
Q 041950 43 QPTDIFLATFPKCGTT-WLKALIFATMN 69 (307)
Q Consensus 43 r~~di~i~syPKSGtT-Wl~~il~~l~~ 69 (307)
+...-.||+-||+|-| .|++|...|..
T Consensus 172 kGQR~LIVAPPkaGKT~lLq~IA~aIt~ 199 (422)
T COG1158 172 KGQRGLIVAPPKAGKTTLLQNIANAITT 199 (422)
T ss_pred CCceeeEecCCCCCchHHHHHHHHHHhc
Confidence 3455789999999975 66666666654
No 21
>PRK09767 hypothetical protein; Provisional
Probab=30.09 E-value=78 Score=24.48 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=27.1
Q ss_pred CCeEEEEehhHhhcChHHHHHHHHHHcCCCC
Q 041950 197 PEKILFLKYEEMMREPFVLLKRLAEFLGQPF 227 (307)
Q Consensus 197 ~~~vl~v~YEdL~~dp~~~l~~I~~FLg~~~ 227 (307)
.=.|+-+..+|+..|+.+++..|...|+...
T Consensus 84 G~~VlRf~n~dV~~~~~~Vl~~I~~~l~~~~ 114 (117)
T PRK09767 84 GWTVLRFWNNEIDCNEEAVLEIILQELNRRS 114 (117)
T ss_pred CCEEEEEEHHHHHhCHHHHHHHHHHHHhccC
Confidence 3479999999999999999999999987643
No 22
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=29.73 E-value=73 Score=28.99 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=35.9
Q ss_pred CCcccCchHHHHHHHHHHhccCCCeEEEEehhHhhc--Ch---HHHHHHHHHHcCCCCCc
Q 041950 175 GVSHYGPFWDHVLGYWKASLESPEKILFLKYEEMMR--EP---FVLLKRLAEFLGQPFSL 229 (307)
Q Consensus 175 ~~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEdL~~--dp---~~~l~~I~~FLg~~~~~ 229 (307)
|....|....-+.+|..++ ...--+++|.||.-. .. ...+.+-++.||+++++
T Consensus 16 G~LHlG~~rtAL~n~l~Ar--~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe 73 (299)
T PRK05710 16 GPLHFGSLVAALGSWLDAR--AHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDG 73 (299)
T ss_pred CcccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCC
Confidence 3445666667778887776 333457899999732 12 24566777899999985
No 23
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=29.73 E-value=84 Score=27.59 Aligned_cols=54 Identities=19% Similarity=0.104 Sum_probs=36.6
Q ss_pred CCcccCchHHHHHHHHHHhccCCCeEEEEehhHhhc-----ChHHHHHHHHHHcCCCCCcc
Q 041950 175 GVSHYGPFWDHVLGYWKASLESPEKILFLKYEEMMR-----EPFVLLKRLAEFLGQPFSLE 230 (307)
Q Consensus 175 ~~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEdL~~-----dp~~~l~~I~~FLg~~~~~~ 230 (307)
|....|.-..-+.+|..++ ...--+++|+||.=. .-...+.+-+++||+.+++.
T Consensus 12 G~lHlG~~~~al~~~l~Ar--~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~~ 70 (238)
T cd00807 12 GYLHIGHAKAILLNFGYAK--KYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKV 70 (238)
T ss_pred CcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCCc
Confidence 3344565566677877776 334457799999754 23456778888999999843
No 24
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=28.81 E-value=62 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEcCCCccchHHHHHHHHHh
Q 041950 47 IFLATFPKCGTTWLKALIFATM 68 (307)
Q Consensus 47 i~i~syPKSGtTWl~~il~~l~ 68 (307)
|+|++.|-||-|-+-+.|+..+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999988888887754
No 25
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=26.56 E-value=1.1e+02 Score=26.60 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=36.6
Q ss_pred CCcccCchHHHHHHHHHHhccCCCeEEEEehhHhhcC-----hHHHHHHHHHHcCCCCCc
Q 041950 175 GVSHYGPFWDHVLGYWKASLESPEKILFLKYEEMMRE-----PFVLLKRLAEFLGQPFSL 229 (307)
Q Consensus 175 ~~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEdL~~d-----p~~~l~~I~~FLg~~~~~ 229 (307)
|....|.-..-+.+|..++ ...--+++|+||.=.. -...+.+-+++||+.+++
T Consensus 12 G~lHlG~~r~al~n~l~Ar--~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~ 69 (230)
T cd00418 12 GYLHIGHARTALFNFAFAR--KYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDE 69 (230)
T ss_pred CcccHHHHHHHHHHHHHHH--HcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCC
Confidence 3344566666777877776 3345678999998442 245666777899999986
No 26
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=26.08 E-value=92 Score=23.40 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.5
Q ss_pred CeEEEEehhHhhcChHHHHHHHHHHc
Q 041950 198 EKILFLKYEEMMREPFVLLKRLAEFL 223 (307)
Q Consensus 198 ~~vl~v~YEdL~~dp~~~l~~I~~FL 223 (307)
-.++-+.++|+..+|..++.+|.+.|
T Consensus 82 w~vlR~~~~dv~~~~~~~~~~I~~~l 107 (108)
T cd01038 82 FRVLRFWNNEVLRNIEAVLEAILAAL 107 (108)
T ss_pred CEEEEEEHHHHhhCHHHHHHHHHHHh
Confidence 47899999999999999999998765
No 27
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=25.40 E-value=44 Score=24.31 Aligned_cols=28 Identities=25% Similarity=0.498 Sum_probs=15.6
Q ss_pred cCccCCCCEEEEcCCCccchHHHHHHHHHhc
Q 041950 39 HFKAQPTDIFLATFPKCGTTWLKALIFATMN 69 (307)
Q Consensus 39 ~~~~r~~di~i~syPKSGtTWl~~il~~l~~ 69 (307)
+-.|..|.||.+||||. |=+.=|.+|+.
T Consensus 3 d~~P~RdHVFhltFPke---WK~~DI~qlFs 30 (87)
T PF08675_consen 3 DPQPSRDHVFHLTFPKE---WKTSDIYQLFS 30 (87)
T ss_dssp ----SGCCEEEEE--TT-----HHHHHHHCC
T ss_pred CCCCCcceEEEEeCchH---hhhhhHHHHhc
Confidence 45678899999999985 76666666664
No 28
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=24.72 E-value=81 Score=28.58 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=26.9
Q ss_pred hcCccCCCCEEEEcCCCcc-chHHHHHHHHHhcC
Q 041950 38 DHFKAQPTDIFLATFPKCG-TTWLKALIFATMNR 70 (307)
Q Consensus 38 ~~~~~r~~di~i~syPKSG-tTWl~~il~~l~~~ 70 (307)
.++.-|+--|+|+++..|| ||++|.+.+++...
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 5677788889999999999 56888888887643
No 29
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=24.35 E-value=64 Score=22.16 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCCCccccccHHHHHHHHhcChhh
Q 041950 216 LKRLAEFLGQPFSLEEESDGVVHEIIRLCSFEN 248 (307)
Q Consensus 216 l~~I~~FLg~~~~~~~~~~~~i~~iv~~~sf~~ 248 (307)
+.+|.+.||++++.++ +.+++++..|+.
T Consensus 8 ~~~i~~~lG~~i~~~~-----i~~~L~~lg~~~ 35 (70)
T PF03484_consen 8 LDKINKLLGIDISPEE-----IIKILKRLGFKV 35 (70)
T ss_dssp HHHHHHHHTS---HHH-----HHHHHHHTT-EE
T ss_pred HHHHHHHhCCCCCHHH-----HHHHHHHCCCEE
Confidence 4678899999999887 888887776653
No 30
>PRK11524 putative methyltransferase; Provisional
Probab=23.90 E-value=71 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.094 Sum_probs=26.7
Q ss_pred cchhhHHHhhhcCccCCCCEEEEcCCCccchHHH
Q 041950 28 GALKGLMFIQDHFKAQPTDIFLATFPKCGTTWLK 61 (307)
Q Consensus 28 ~~~~~~~~~~~~~~~r~~di~i~syPKSGtTWl~ 61 (307)
.+..++++.+=..-..++|+++=.|--||||.+-
T Consensus 192 ~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~A 225 (284)
T PRK11524 192 QKPEALLKRIILASSNPGDIVLDPFAGSFTTGAV 225 (284)
T ss_pred cChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHH
Confidence 4555666666555668999999999999999774
No 31
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=22.59 E-value=66 Score=18.05 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=11.1
Q ss_pred CCccchHHHHHHHH
Q 041950 53 PKCGTTWLKALIFA 66 (307)
Q Consensus 53 PKSGtTWl~~il~~ 66 (307)
-|||.+|+.--+..
T Consensus 7 yKsGK~Wv~a~~~~ 20 (29)
T TIGR03715 7 YKSGKQWVFAAITT 20 (29)
T ss_pred EecccHHHHHHHHH
Confidence 48999999876554
No 32
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=22.24 E-value=64 Score=26.59 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred cccCcHHHHHHHHHHHHHHhcc
Q 041950 283 ENHLTKEMTERLDQITEEKLEM 304 (307)
Q Consensus 283 k~~fs~e~~~~~~~~~~e~l~~ 304 (307)
.+.|||||...|++.++++|..
T Consensus 121 y~lLTPEQKaq~~~~~~~rm~~ 142 (166)
T PRK10363 121 YRLLTPEQQAVLNEKHQQRMEQ 142 (166)
T ss_pred HHhCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999864
No 33
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=22.10 E-value=90 Score=25.89 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.2
Q ss_pred EEEEcCCCccchHHHHHHHHHhc
Q 041950 47 IFLATFPKCGTTWLKALIFATMN 69 (307)
Q Consensus 47 i~i~syPKSGtTWl~~il~~l~~ 69 (307)
|-|.+-|-||||=+-.+|+..++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 67899999999999999988764
No 34
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=21.64 E-value=1.4e+02 Score=29.45 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=35.0
Q ss_pred CCcccCchHHHHHHHHHHhccCCCeEEEEehhHhh--cChHHHHHHH---HHHcCCCCCc
Q 041950 175 GVSHYGPFWDHVLGYWKASLESPEKILFLKYEEMM--REPFVLLKRL---AEFLGQPFSL 229 (307)
Q Consensus 175 ~~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEdL~--~dp~~~l~~I---~~FLg~~~~~ 229 (307)
|....|.-...+.+|+.++ ...--+++|.||.= +...+.++.| +++||+++++
T Consensus 15 G~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe 72 (513)
T PRK14895 15 GFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNG 72 (513)
T ss_pred CCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCC
Confidence 3344555556677887766 33456789999983 3344444444 7899999984
No 35
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=21.55 E-value=93 Score=21.10 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=21.7
Q ss_pred HHHHHHHcCCCCCccccccHHHHHHHHhcChh
Q 041950 216 LKRLAEFLGQPFSLEEESDGVVHEIIRLCSFE 247 (307)
Q Consensus 216 l~~I~~FLg~~~~~~~~~~~~i~~iv~~~sf~ 247 (307)
..+|.+.||+++++++ +..++.+..|+
T Consensus 8 ~~~i~~llG~~i~~~e-----i~~~L~~lg~~ 34 (71)
T smart00874 8 RERINRLLGLDLSAEE-----IEEILKRLGFE 34 (71)
T ss_pred HHHHHHHHCCCCCHHH-----HHHHHHHCCCe
Confidence 4678899999999887 88888776664
No 36
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=21.28 E-value=1.3e+02 Score=22.40 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=26.3
Q ss_pred EEEehhHhhcChHHHHHHHHHHcCCCCCccc
Q 041950 201 LFLKYEEMMREPFVLLKRLAEFLGQPFSLEE 231 (307)
Q Consensus 201 l~v~YEdL~~dp~~~l~~I~~FLg~~~~~~~ 231 (307)
.++.++|+. .+...++++.+++|.+..+..
T Consensus 18 ~Li~~~dl~-~~~~Ll~~LleWFnf~~~~~~ 47 (98)
T PF14726_consen 18 GLISEEDLV-KERLLLKQLLEWFNFPPVPMK 47 (98)
T ss_pred ccccHHHHc-cHHHHHHHHHHHhCCCCCccH
Confidence 468899999 999999999999999877753
No 37
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=21.27 E-value=1.4e+02 Score=26.70 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=37.1
Q ss_pred CCcccCchHHHHHHHHHHhccCCCeEEEEehhHhhcC-----hHHHHHHHHHHcCCCCCcc
Q 041950 175 GVSHYGPFWDHVLGYWKASLESPEKILFLKYEEMMRE-----PFVLLKRLAEFLGQPFSLE 230 (307)
Q Consensus 175 ~~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEdL~~d-----p~~~l~~I~~FLg~~~~~~ 230 (307)
|....|.-..-+.+|..++ ...--+++|.||.-.. -...+.+-+++||+++++.
T Consensus 11 G~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~ 69 (272)
T TIGR03838 11 GPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGE 69 (272)
T ss_pred CcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC
Confidence 3344566666677877776 3455788999997632 2356777778999999853
No 38
>PRK08118 topology modulation protein; Reviewed
Probab=20.88 E-value=99 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.4
Q ss_pred CEEEEcCCCccchHHHHHHHHHhc
Q 041950 46 DIFLATFPKCGTTWLKALIFATMN 69 (307)
Q Consensus 46 di~i~syPKSGtTWl~~il~~l~~ 69 (307)
.|+|++.|-||.|.+-..|+..++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999988888877654
No 39
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=20.30 E-value=50 Score=20.81 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=22.1
Q ss_pred CCCEEEEcCCCc--cchHHHHHHHHHhcCC
Q 041950 44 PTDIFLATFPKC--GTTWLKALIFATMNRS 71 (307)
Q Consensus 44 ~~di~i~syPKS--GtTWl~~il~~l~~~~ 71 (307)
+.|-+|+-+.|. |-+|++..+....+++
T Consensus 10 ~aDYIVVEmA~~lLGe~W~~~~v~~a~~GG 39 (45)
T PF11880_consen 10 EADYIVVEMARHLLGENWQQDYVERANNGG 39 (45)
T ss_pred ccceehHHHHHHHhhhhHHHHHHHHHHcCC
Confidence 556777777776 9999999999887654
Done!