BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041951
(726 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 582 bits (1501), Expect = e-166, Method: Compositional matrix adjust.
Identities = 320/655 (48%), Positives = 417/655 (63%), Gaps = 49/655 (7%)
Query: 81 TTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGK 140
TTRSWDF+G L++ R+ VESN++VGV+DTGIWPES SF DEGF P P KWKG C
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 141 NFTCNNKIIGARYY------TPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTA 194
NF CN KIIGAR Y +P + RD GHG+HTASTA+G V A+ YG+G GTA
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTA 120
Query: 195 RGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIG 254
RGGVP RIAAYKVC+ GC +L A+DDAIADGVD+I++S+GG + + DAI+IG
Sbjct: 121 RGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIG 180
Query: 255 AFHAMAKGVLTLNSAGNSGPGL--TASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYS 312
+FHA+ +G+LT NSAGN GP TAS++PWL+SVAAST DR FV +V +GNG++ G S
Sbjct: 181 SFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240
Query: 313 INSFAMKGRRFPLVYGKXXXXXXXXXXXXX-XNPGCVNGSLVKGKIVICQSFKNYPEVRK 371
IN+F + +PLV G+ VN +L+KGKIV+C++ E K
Sbjct: 241 INTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFK 298
Query: 372 A--GAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFI 429
+ GAAG ++ +N D +V D L++L +YI+ I
Sbjct: 299 SLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATL-------RYIYSI---------- 341
Query: 430 FFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVD 489
R+P A I K+ + + APVVV FSSRGPN +++KPDIS PGV+
Sbjct: 342 -------------RSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVE 388
Query: 490 ILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIM 549
ILAA+ +A +R +NIISGTSMSCPH G+A YVK+++P WSP+AIKSA+M
Sbjct: 389 ILAAWPSVAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALM 445
Query: 550 TTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCNIGYDESKVRIIS 609
TTA MN+ N +AEFAYGSGHVNP+KA+ PGLVY+ + DY+K LC GY+ VR I+
Sbjct: 446 TTASPMNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRIT 505
Query: 610 GDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGVANSTYRAKVLQNSK 669
GD SAC G + DLNYPS VS ++F F RT+T+V STYRA +
Sbjct: 506 GDYSACTSG-NTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQG 564
Query: 670 ISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWSDGNHWVRSPIVV 724
++I V P+VLSF L ++KSF++TV +G +G +VSASLVWSDG H+VRSPI +
Sbjct: 565 LTISVNPNVLSFNGLGDRKSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 356 bits (913), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 252/679 (37%), Positives = 361/679 (53%), Gaps = 72/679 (10%)
Query: 81 TTRSWDFMGLNLS--ITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNG 138
TT + DF+ LN S + + ++IV V+D+GIWPES SF D+G PK+WKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 139 GKNFT---CNNKIIGARYYTPA----------PYDTARDEEGHGSHTASTASGNEVKDAS 185
G F CN K+IGA Y+ ++ARD +GHG+H AS +GN K S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 186 FYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVD 245
+G GTARG P R+A YK F G ++ ++ A D A+ADGVD+I+IS G +
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGY-RFIP 179
Query: 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTA--SVAPWLMSVAASTTDRLFVDKVALG 303
EDAISI +F AM KGVL SAGN GPG+ + + +PW++ VA+ TDR F + LG
Sbjct: 180 LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239
Query: 304 NGKAISGYSINSFAMKGRRFPLVYGKXXXX-XXXXXXXXXXNPGCVNGSLVKGKIVICQS 362
NG I G+S+ R P++Y K NP + IVIC
Sbjct: 240 NGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENP--------ENTIVICDD 291
Query: 363 FKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAV--AVSQDSLSSLISYKESTKYIFYIL 420
++ + + ++ F+ P V + + + +++ KE + I Y+
Sbjct: 292 NGDFSDQMR------IITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVK 345
Query: 421 RKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILK 480
+ I FQ+ YLD + APVV S+RGP+ I K
Sbjct: 346 NSVTPTATITFQET----YLDTKP---------------APVVAASSARGPSRSYLGISK 386
Query: 481 PDISAPGVDILAAFSP-LAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDW 539
PDI APGV ILAA+ P + SI + Y + SGTSM+ PHAAG+AA +K+ HP+W
Sbjct: 387 PDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEW 446
Query: 540 SPSAIKSAIMTTAWAMNSSK-------NTEAE--FAYGSGHVNPVKAINPGLVYETFKQD 590
SPSAI+SA+MTTA +++++ N +A G+GHV+P +A++PGLVY+ QD
Sbjct: 447 SPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQD 506
Query: 591 YIKMLCNIGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVV---NFP 647
Y+ +LC++ + E + + I+ SA S+ P DLNYPS A S +F + F
Sbjct: 507 YVNLLCSLNFTEEQFKTIA-RSSASHNCSN--PSADLNYPSFIALYSIEGNFTLLEQKFK 563
Query: 648 RTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSA 707
RTVTNVG +TY+AK+ +I V P +L FK+ NEK+S+++T+ G +
Sbjct: 564 RTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVG 623
Query: 708 SLVW--SDGNHWVRSPIVV 724
S+ W +GNH VRSPIV
Sbjct: 624 SITWVEQNGNHSVRSPIVT 642
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 72/132 (54%), Gaps = 12/132 (9%)
Query: 447 AEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSED 506
++++ AV +D V+ FSSRGP A LKP++ APG I+AA + D
Sbjct: 295 SKVITVGAVDKYD--VITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPIND 350
Query: 507 KRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTE-AEF 565
Y GT+M+ PH AG+AA + HP W+P +K+A++ TA + K E A+
Sbjct: 351 Y----YTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETA---DIVKPDEIADI 403
Query: 566 AYGSGHVNPVKA 577
AYG+G VN KA
Sbjct: 404 AYGAGRVNAYKA 415
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 161 TARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDS-AGV 219
T D+ GHG+H AS A+G G +G P ++ KV G S + +
Sbjct: 173 TPYDDNGHGTHVASIAAGTGA-------ASNGKYKGMAPGAKLVGIKVLNGQGSGSISDI 225
Query: 220 LGAFDDAIAD----GVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP 274
+ D A+ + G+ VI +S+G + D D++S +A G++ + +AGNSGP
Sbjct: 226 INGVDWAVQNKDKYGIKVINLSLGSSQSSD-GTDSLSQAVNNAWDAGLVVVVAAGNSGP 283
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 145/548 (26%), Positives = 215/548 (39%), Gaps = 143/548 (26%)
Query: 93 SITRKRSVESNLIVGVIDTGIWPESESF-----------SDEGFGPAPKKWKGACNGGKN 141
++ K S + +V VID G E++ S E A KK G G
Sbjct: 17 TLQEKASKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKA-KKEHGITYGE-- 73
Query: 142 FTCNNKIIGARYYTPAPYD--TARDEEGHGSHTASTASGN---EVKDASFYGVGQGTARG 196
N+K+ YY D TA D+E HG+H + SGN E K+ Y + G
Sbjct: 74 -WVNDKVA---YYHDYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEP--YRL-----EG 121
Query: 197 GVPSGRIAAYKVCFPGG-CDSA-GVLGAFDDAIADGVDVITISIGGDSAVDFSE--DAIS 252
+P ++ +V G D A A DA+ G VI +S G ++A+ ++ D
Sbjct: 122 AMPEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFG-NAALAYANLPDETK 180
Query: 253 IGAFHAMAKGVLTLNSAGNS-----------------GPGLTASVAPWLMSVAASTTDRL 295
+A +KGV + SAGN G T + A ++VA+ + D+
Sbjct: 181 KAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQ 240
Query: 296 FVD----KVALGNGKAISGYSINSFAMKGRRFPLVYGKXXXXXXXXXXXXXXNPGCVNGS 351
+ K K + S N F + + Y N G
Sbjct: 241 LTETATVKTDDHQAKEMPVLSTNRFE-PNKAYDYAYA---------------NRGMKEDD 284
Query: 352 L--VKGKIVICQ----SFKN-YPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSL- 403
VKGKI + + FK+ +KAGA G ++ +N+ DK F + LP V D +
Sbjct: 285 FKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQ-DK-GFPIELPNV----DQMP 338
Query: 404 SSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVV 463
++ IS K+ +L K I F L P A K +
Sbjct: 339 AAFISRKDG------LLLKDNSKKTITFNATPKVL------PTASDTK-----------L 375
Query: 464 VGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCP 523
FSS G A +KPDI+APG DIL++ + KY +SGTSMS P
Sbjct: 376 SRFSSWGLTA--DGNIKPDIAAPGQDILSSVA-------------NNKYAKLSGTSMSAP 420
Query: 524 HAAGVAAYVK----SFHPDWSPSA----IKSAIMTTAWAMNSSKNTEAEFAY------GS 569
AG+ ++ + +PD +PS K +M++A A+ E E AY G+
Sbjct: 421 LVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYD----EDEKAYFSPRQQGA 476
Query: 570 GHVNPVKA 577
G V+ KA
Sbjct: 477 GAVDAKKA 484
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I + KY +SGTSM+ PH
Sbjct: 180 FSSVGP--------ELDVMAPGVSICSTL-------------PGGKYGALSGTSMASPHV 218
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ TA + S F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTATKLGDS------FYYGKGLIN 260
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 25/100 (25%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
+ G + P+ + +D HG+H A GT PS + A
Sbjct: 43 NVAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAV 84
Query: 207 KVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
KV G D +G ++ + AIA+ +DVI +S+G S
Sbjct: 85 KVL---GADGSGQASWIINGIEWAIANNMDVINMSLGSPS 121
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I + KY +SGT+M+ PH
Sbjct: 180 FSSVGP--------ELDVMAPGVSICSTL-------------PGGKYGALSGTAMASPHV 218
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ TA + S F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTATKLGDS------FYYGKGLIN 260
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 25/100 (25%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
+ G + P+ + +D HG+H A GT PS + A
Sbjct: 43 NVAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAV 84
Query: 207 KVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
KV G D +G ++ + AIA+ +DVI +S+G S
Sbjct: 85 KVL---GADGSGQASWIINGIEWAIANNMDVINMSLGSPS 121
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 17/117 (14%)
Query: 448 EILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKP-------DISAPGVDI-----LAAFS 495
EI T+A K A ++ +S N+ +P + P DI+ P V + LA +
Sbjct: 291 EINSTKACKTAGAKGIIVYS----NSALPGLQNPFLVDANSDITVPSVSVDRATGLALKA 346
Query: 496 PLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 552
L Q++ S + Y +GTSM+ PH +GVA V S+HP+ S S +++A+ TA
Sbjct: 347 KLGQSTTVSNQGNQ-DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY +GTSM+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAYNGTSMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS------FYYGKGLIN 269
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 KVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPSASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY +GTSM+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAYNGTSMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS------FYYGKGLIN 269
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G P+ +D+ HG+H A T A N + GV G PS +
Sbjct: 43 KVAGGASMVPSETPNFQDDNSHGTHVAGTVAALNNSI------GV-----LGVAPSSALY 91
Query: 205 AYKVCFPGGCDS-AGVLGAFDDAIADGVDVITISIGGDS 242
A KV G + ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVLGDAGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I + KY SGTSM+ PH
Sbjct: 180 FSSVGP--------ELDVMAPGVSICSTL-------------PGNKYGAKSGTSMASPHV 218
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + +S F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTTTKLGNS------FYYGKGLIN 260
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 25/100 (25%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
+ G + P+ + +D HG+H A GT PS + A
Sbjct: 43 NVAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAV 84
Query: 207 KVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 85 KVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I + KY SGTSM+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSIXSTL-------------PGNKYGAYSGTSMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
K+ G + P+ + +D HG+H A T + D S GV G PS + A
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHVAGTVA---ALDNSI-GV-----LGVAPSASLYAV 93
Query: 207 KVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 94 KVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY SGTSM+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAKSGTSMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G + P+ + +D HG+H A T A N + GV G P +
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPCASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I + KY SGTSM+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSICSTL-------------PGNKYGAKSGTSMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
K+ G + P+ + +D HG+H A T + D S GV G PS + A
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHVAGTVA---ALDNSI-GV-----LGVAPSASLYAV 93
Query: 207 KVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 94 KVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I + KY SGTSM+ PH
Sbjct: 180 FSSVGP--------ELDVMAPGVSICSTL-------------PGNKYGAKSGTSMASPHV 218
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 260
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 25/100 (25%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
+ G + P+ + +D HG+H A GT PS + A
Sbjct: 43 NVAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAV 84
Query: 207 KVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 85 KVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I + KY SGTSM+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSIXSTL-------------PGNKYGAYSGTSMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTYLGDS------FYYGKGLIN 269
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
K+ G + P+ + +D HG+H A T + D S GV G PS + A
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHVAGTVA---ALDNSI-GV-----LGVAPSASLYAV 93
Query: 207 KVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 94 KVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I + KY SGTSM+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSICSTL-------------PGNKYGAKSGTSMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G + P+ + +D HG+H A T A N + GV G P +
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPCASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY +GTSM+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAYNGTSMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 KVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPSASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY +GTSM+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAYNGTSMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 KVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPSASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY +GTSM+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAYNGTSMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 KVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPSASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I++ KY SGT+M+ PH
Sbjct: 180 FSSVGP--------ELDVMAPGVSIVSTL-------------PGNKYGAKSGTAMASPHV 218
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 260
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 25/100 (25%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
+ G + P+ + +D HG+H A GT PS + A
Sbjct: 43 NVAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAV 84
Query: 207 KVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 85 KVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I++ KY SGT+M+ PH
Sbjct: 180 FSSVGP--------ELDVMAPGVSIVSTL-------------PGNKYGAKSGTAMASPHV 218
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 260
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 25/100 (25%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
+ G + P+ + +D HG+H A GT PS + A
Sbjct: 43 NVAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAV 84
Query: 207 KVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 85 KVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY SGT M+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAYSGTXMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 KVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPSASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY SGT M+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAYSGTXMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G P+ + +D HG+H A T A N + GV G P +
Sbjct: 43 KVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPCASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY SGT M+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAKSGTXMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G + P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPSASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I + KY SGT M+ PH
Sbjct: 180 FSSVGP--------ELDVMAPGVSICSTL-------------PGNKYGAKSGTXMASPHV 218
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 260
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 25/100 (25%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
+ G + P+ + +D HG+H A GT PS + A
Sbjct: 43 NVAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAV 84
Query: 207 KVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 85 KVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APGV++ + + AS++ GTSM+ PH AGVAA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASLN-------------GTSMATPHVAGVAALVKQKNPSWSN 237
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
I++ + TA + ++ YGSG VN
Sbjct: 238 VQIRNHLKNTATGLGNTN------LYGSGLVN 263
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
I G + P T +D GHG+H A T A N + GV PS +
Sbjct: 42 NIRGGASFVPGEPST-QDGNGHGTHVAGTIAALNNSI---GVLGV--------APSAELY 89
Query: 205 AYKVCFPGGCDSAGVLG-AFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGV 263
A KV G S + + A +G+ V +S+G S E A++ A ++GV
Sbjct: 90 AVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGV 145
Query: 264 LTLNSAGNSGPGLTASVAPWLMSVAASTTDR 294
L + ++GNSG G + A + ++A TD+
Sbjct: 146 LVVAASGNSGAGSISYPARYANAMAVGATDQ 176
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY +GT M+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAYNGTXMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 KVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPSASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY +GT M+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAYNGTXMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 KVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPSASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APGV++ + + AS++ GTSM+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASLN-------------GTSMATPHVAGAAALVKQKNPSWSN 237
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
I++ + TA ++ S+ YGSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
I G + P T +D GHG+H A T A N + GV P+ +
Sbjct: 42 NIRGGASFVPGEPST-QDGNGHGTHVAGTIAALNNSI---GVLGV--------APNAELY 89
Query: 205 AYKVCFPGGCDSAGVLG-AFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGV 263
A KV G S + + A +G+ V +S+G S E A++ A ++GV
Sbjct: 90 AVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGV 145
Query: 264 LTLNSAGNSGPGLTASVAPWLMSVAASTTDR 294
L + ++GNSG G + A + ++A TD+
Sbjct: 146 LVVAASGNSGAGSISYPARYANAMAVGATDQ 176
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APGV++ + + AS++ GTSM+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASLN-------------GTSMATPHVAGAAALVKQKNPSWSN 237
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
I++ + TA ++ S+ YGSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
I G + P T +D GHG+H A T A N + GV P+ +
Sbjct: 42 NIRGGASFVPGEPST-QDGNGHGTHVAGTIAALNNSI---GVLGV--------APNAELY 89
Query: 205 AYKVCFPGGCDSAGVLG-AFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGV 263
A KV G S + + A +G+ V +S+G S E A++ A ++GV
Sbjct: 90 AVKVLGASGGGSNSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGV 145
Query: 264 LTLNSAGNSGPGLTASVAPWLMSVAASTTDR 294
L + ++GNSG G + A + ++A TD+
Sbjct: 146 LVVAASGNSGAGSISYPARYANAMAVGATDQ 176
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APGV++ + + AS++ GTSM+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASLN-------------GTSMATPHVAGAAALVKQKNPSWSN 237
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
I++ + TA ++ S+ YGSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APGV++ + + AS++ GTSM+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASLN-------------GTSMATPHVAGAAALVKQKNPSWSN 237
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
I++ + TA ++ S+ YGSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
I G + P T +D GHG+H A T A N + GV PS +
Sbjct: 42 NIRGGASFVPGEPST-QDGNGHGTHVAGTIAALNNSI---GVLGV--------APSAELY 89
Query: 205 AYKVCFPGGCDSAGVLG-AFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGV 263
A KV G S + + A +G+ V +S+G S E A++ A ++GV
Sbjct: 90 AVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGV 145
Query: 264 LTLNSAGNSGPGLTASVAPWLMSVAASTTDR 294
L + ++GNSG G + A + ++A TD+
Sbjct: 146 LVVAASGNSGAGSISYPARYANAMAVGATDQ 176
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APGV++ + + AS++ GTSM+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASLN-------------GTSMATPHVAGAAALVKQKNPSWSN 237
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
I++ + TA ++ S+ YGSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 25/154 (16%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
I G + P T +D GHG+H A T A N + GV PS +
Sbjct: 42 NIRGGASFVPGEPST-QDGNGHGTHVAGTIAALNNSI---GVLGV--------APSAELY 89
Query: 205 AYKVCFPGGCDSAGVLGAFDDAIA----DGVDVITISIGGDSAVDFSEDAISIGAFHAMA 260
A KV G D G + + + +G+ V +S+G S E A++ A +
Sbjct: 90 AVKVL---GADGRGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATS 142
Query: 261 KGVLTLNSAGNSGPGLTASVAPWLMSVAASTTDR 294
+GVL + ++GNSG + A + ++A TD+
Sbjct: 143 RGVLVVAASGNSGASSISYPARYANAMAVGATDQ 176
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I + KY SGT M+ PH
Sbjct: 177 FSSVGP--------ELDVMAPGVSIWSTL-------------PGNKYGAKSGTXMASPHV 215
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 216 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 257
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 25/100 (25%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
K+ G + P+ + +D HG+H A GT PS + A
Sbjct: 40 KVAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAV 81
Query: 207 KVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
KV G D +G ++ + AIA+ +DVI +S+GG S
Sbjct: 82 KVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 118
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 18/104 (17%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKR--KPKYNIISGTSMSCPHAAGVAAYV----KSF 535
D++APG DIL+ ++DS +R Y+ ++GTSM+ PH +GVAA V S
Sbjct: 245 DLAAPGQDILS--------TVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 536 HPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
+ + +P+ +K +++T S N + A GSG V+ A+N
Sbjct: 297 NKNLTPAELKDVLVSTT----SPFNGRLDRALGSGIVDAEAAVN 336
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 18/104 (17%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKR--KPKYNIISGTSMSCPHAAGVAAYV----KSF 535
D++APG DIL+ ++DS +R Y+ ++GTSM+ PH +GVAA V S
Sbjct: 245 DLAAPGQDILS--------TVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 536 HPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
+ + +P+ +K +++T S N + A GSG V+ A+N
Sbjct: 297 NKNLTPAELKDVLVSTT----SPFNGRLDRALGSGIVDAEAAVN 336
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 18/104 (17%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKR--KPKYNIISGTSMSCPHAAGVAAYV----KSF 535
D++APG DIL+ ++DS +R Y+ ++GTSM+ PH +GVAA V S
Sbjct: 245 DLAAPGQDILS--------TVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSV 296
Query: 536 HPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
+ + +P+ +K +++T S N + A GSG V+ A+N
Sbjct: 297 NKNLTPAELKDVLVSTT----SPFNGRLDRALGSGIVDAEAAVN 336
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 27/108 (25%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I Q+++ KY +GTS + PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSI--------QSTLPGN-----KYGAYNGTSXASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
AG AA + S HP+W+ + ++S++ T + S F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 20/102 (19%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
K+ G P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 KVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNSI------GV-----LGVAPSASLY 91
Query: 205 AYKVCFPGGCDSAG----VLGAFDDAIADGVDVITISIGGDS 242
A KV G D +G ++ + AIA+ DVI S+GG S
Sbjct: 92 AVKVL---GADGSGQYSWIINGIEWAIANNXDVINXSLGGPS 130
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APGV++ + + AS++ GT M+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASLN-------------GTXMATPHVAGAAALVKQKNPSWSN 237
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
I++ + TA ++ S+ YGSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
I G + P T +D GHG+H A T A N + GV P+ +
Sbjct: 42 NIRGGASFVPGEPST-QDGNGHGTHVAGTIAALNNSI---GVLGV--------APNAELY 89
Query: 205 AYKVCFPGGCDSAGVLG-AFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGV 263
A KV G S + + A +G+ V +S+G S E A++ A ++GV
Sbjct: 90 AVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGV 145
Query: 264 LTLNSAGNSGPGLTASVAPWLMSVAASTTDR 294
L + ++GNSG G + A + ++A TD+
Sbjct: 146 LVVAASGNSGAGSISYPARYANAMAVGATDQ 176
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APGV++ + + AS++ GT M+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASLN-------------GTXMATPHVAGAAALVKQKNPSWSN 237
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
I++ + TA ++ S+ YGSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APGV++ + + AS++ GT M+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASLN-------------GTXMATPHVAGAAALVKQKNPSWSN 237
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
I++ + TA ++ S+ YGSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
I G + P T +D GHG+H A T + D S GV G PS + A
Sbjct: 42 NIRGGASFVPGEPST-QDGNGHGTHVAGTIA---ALDNSI-GV-----LGVAPSAELYAV 91
Query: 207 KVCFPGGCDS-AGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLT 265
KV G + + + + A +G+ V +S+G S E A++ A ++GVL
Sbjct: 92 KVLGASGSGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLV 147
Query: 266 LNSAGNSGPGLTASVAPWLMSVAASTTDR 294
+ ++GN G G A + ++A TD+
Sbjct: 148 VAASGNEGAGSIDYPARYANAMAVGATDQ 176
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APGV++ + + AS++ GT M+ PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASLN-------------GTXMATPHVAGAAALVKQKNPSWSN 237
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
I++ + TA ++ S+ YGSG VN
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
I G + P T +D GHG+H A T + D S GV G PS + A
Sbjct: 42 NIRGGASFVPGEPST-QDGNGHGTHVAGTIA---ALDNSI-GV-----LGVAPSAELYAV 91
Query: 207 KVCFPGGCDS-AGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLT 265
KV G + + + + A +G+ V +S+G S E A++ A ++GVL
Sbjct: 92 KVLGASGSGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLV 147
Query: 266 LNSAGNSGPGLTASVAPWLMSVAASTTDR 294
+ ++GNSG G + A + ++A TD+
Sbjct: 148 VAASGNSGAGSISYPARYANAMAVGATDQ 176
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGH 571
Y ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F YG G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 266
Query: 572 VN 573
+N
Sbjct: 267 IN 268
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGH 571
Y ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F YG G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 266
Query: 572 VN 573
+N
Sbjct: 267 IN 268
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGH 571
Y ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F YG G
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 267
Query: 572 VN 573
+N
Sbjct: 268 IN 269
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGH 571
Y ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F YG G
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 267
Query: 572 VN 573
+N
Sbjct: 268 IN 269
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGH 571
Y ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F YG G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 266
Query: 572 VN 573
+N
Sbjct: 267 IN 268
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGH 571
Y ++GTSM+ PH AG AA + S HP+ S S +++ + +TA + SS F YG G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 266
Query: 572 VN 573
+N
Sbjct: 267 IN 268
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
D+ APGV I + Y +GTSM+ PH AG AA + S HP W+
Sbjct: 197 DVMAPGVSIQSTL-------------PGGTYGAYNGTSMATPHVAGAAALILSKHPTWTN 243
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
+ ++ + +TA + SS F YG G +N
Sbjct: 244 AQVRDRLESTATYLGSS------FYYGKGLIN 269
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
+ G + P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 NVRGGASFVPSETNPYQDGSSHGTHVAGTIAALNNSI------GV-----LGVAPSASLY 91
Query: 205 AYKVCFPGGCDSAG------VLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHA 258
A KV DS G ++ + AI++ +DVI +S+GG + A+ A
Sbjct: 92 AVKVL-----DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTG----STALKTVVDKA 142
Query: 259 MAKGVLTLNSAGNSG 273
++ G++ +AGN G
Sbjct: 143 VSSGIVVAAAAGNEG 157
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGH 571
Y ++GT M+ PH AG AA + S HP+ S S +++ + +TA + SS F YG G
Sbjct: 213 YATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGL 266
Query: 572 VN 573
+N
Sbjct: 267 IN 268
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
D+ APGV I + Y +GT M+ PH AG AA + S HP W+
Sbjct: 197 DVMAPGVSIQSTL-------------PGGTYGAYNGTXMATPHVAGAAALILSKHPTWTN 243
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
+ ++ + +TA + +S F YG G +N
Sbjct: 244 AQVRDRLESTATYLGNS------FYYGKGLIN 269
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
+ G + P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 NVRGGASFVPSETNPYQDGSSHGTHVAGTIAALNNSI------GV-----LGVAPSASLY 91
Query: 205 AYKVCFPGGCDSAG------VLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHA 258
A KV DS G ++ + AI++ +DVI +S+GG + A+ A
Sbjct: 92 AVKVL-----DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTG----STALKTVVDKA 142
Query: 259 MAKGVLTLNSAGNSG 273
++ G++ +AGN G
Sbjct: 143 VSSGIVVAAAAGNEG 157
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
D+ APGV I + Y +GT M+ PH AG AA + S HP W+
Sbjct: 197 DVMAPGVSIQSTL-------------PGGTYGAYNGTCMATPHVAGAAALILSKHPTWTN 243
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
+ ++ + +TA + +S F YG G +N
Sbjct: 244 AQVRDRLESTATYLGNS------FYYGKGLIN 269
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIA 204
+ G + P+ + +D HG+H A T A N + GV G PS +
Sbjct: 43 NVRGGASFVPSETNPYQDGSSHGTHVAGTIAALNNSI------GV-----LGVSPSASLY 91
Query: 205 AYKVCFPGGCDSAG------VLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHA 258
A KV DS G ++ + AI++ +DVI +S+GG + A+ A
Sbjct: 92 AVKVL-----DSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTG----STALKTVVDKA 142
Query: 259 MAKGVLTLNSAGNSG 273
++ G++ +AGN G
Sbjct: 143 VSSGIVVAAAAGNEG 157
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 463 VVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSE--DKRKPKYNIISGTSM 520
V FSSRGP +KPD+ APG IL+A S LA DS KY + GTSM
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAP---DSSFWANHDSKYAYMGGTSM 256
Query: 521 SCPHAAGVAA-----YVKSFHPDWSPSAIKSAIMTTA 552
+ P AG A +VK+ PS +K+A++ A
Sbjct: 257 ATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 19/121 (15%)
Query: 160 DTARDEEGHGSHTASTASGNEVKD-ASFYGVGQGTARGGVPSGRIAAYKVCFPGGCD--- 215
++ D GHG+H A TA + D A YGV P + AYKV G
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGIYGV--------APDADLWAYKVLLDSGSGYSD 114
Query: 216 --SAGVLGAFDDAIADGVD-VITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNS 272
+A + A D A A G +I++S+G + + IS +A +KGVL + +AGNS
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSA----NNSLISSAVNYAYSKGVLIVAAAGNS 170
Query: 273 G 273
G
Sbjct: 171 G 171
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 453 EAVKDFDAPVVVGFSSRGPNAIVPEIL----KPDISAPGVDILAAFSPLAQASIDSEDKR 508
E V+ V +SSRG + + + +ISAPG + + +
Sbjct: 193 ENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------Y 239
Query: 509 KPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 552
YN ISGT M+ PH +G+AA + + +P S + ++S + A
Sbjct: 240 NGGYNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 19/121 (15%)
Query: 160 DTARDEEGHGSHTASTASGNEVKD-ASFYGVGQGTARGGVPSGRIAAYKVCFPGGCD--- 215
++ D GHG+H A TA + D A YGV P + AYKV G
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGIYGV--------APDADLWAYKVLLDSGSGYSD 114
Query: 216 --SAGVLGAFDDAIADGVD-VITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNS 272
+A + A D A A G +I++S+G + + IS +A +KGVL + +AGNS
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSA----NNSLISSAVNYAYSKGVLIVAAAGNS 170
Query: 273 G 273
G
Sbjct: 171 G 171
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 453 EAVKDFDAPVVVGFSSRGPNAIVPEIL----KPDISAPGVDILAAFSPLAQASIDSEDKR 508
E V+ V +SSRG + + + +ISAPG + + +
Sbjct: 193 ENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------Y 239
Query: 509 KPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 552
YN ISGTSM+ PH +G+AA + + +P S + ++S + A
Sbjct: 240 NGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 19/92 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
++ APGV + + + Y ++GTSM+ PH AG AA + S +P S
Sbjct: 196 EVMAPGVSVYSTY-------------PSNTYTSLNGTSMASPHVAGAAALILSKYPTLSA 242
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573
S +++ + +TA + S F YG G +N
Sbjct: 243 SQVRNRLSSTATNLGDS------FYYGKGLIN 268
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 43/174 (24%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIG-ARYYTPAPYD 160
+N+ VG+IDTGI + S +D K++G A + + Y+
Sbjct: 24 ANVKVGIIDTGI---ASSHTDL-----------------------KVVGGASFVSGESYN 57
Query: 161 TARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDS-AGV 219
T D GHG+H A T + + GV P+ + A KV G S + +
Sbjct: 58 T--DGNGHGTHVAGTVAALD-NTTGVLGV--------APNVSLYAIKVLNSSGSGSYSAI 106
Query: 220 LGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSG 273
+ + A +G+DVI +S+GG S + A+ A A G++ + +AGNSG
Sbjct: 107 VSGIEWATQNGLDVINMSLGGPSGSTALKQAVD----KAYASGIVVVAAAGNSG 156
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 463 VVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKP-----KYNIISG 517
V GFSSR + APGV IL+ + ++ P Y+ G
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 518 TSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSS 558
TSM+ PH GV A + P+ P I+ + TA+ N +
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN 420
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APG I +++ A+ N ISGTSM+ PH AGVAA +P+ SP
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 542 SAIKSAIMTTAWA 554
+ + + + T A A
Sbjct: 247 AQVTNLLKTRATA 259
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 31/113 (27%)
Query: 479 LKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVK----S 534
+KPDI+APG DIL++ + KY +SGTS S P AG+ ++ +
Sbjct: 380 IKPDIAAPGQDILSSVA-------------NNKYAKLSGTSXSAPLVAGIXGLLQKQYET 426
Query: 535 FHPDWSPSA----IKSAIMTTAWAMNSSKNTEAEFAY------GSGHVNPVKA 577
+PD +PS K + ++A A+ E E AY G+G V+ KA
Sbjct: 427 QYPDXTPSERLDLAKKVLXSSATALYD----EDEKAYFSPRQQGAGAVDAKKA 475
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 463 VVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSE--DKRKPKYNIISGTSM 520
V FSSRGP +KPD+ APG IL+A S LA DS KY GTS
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAP---DSSFWANHDSKYAYXGGTSX 256
Query: 521 SCPHAAGVAA-----YVKSFHPDWSPSAIKSAIMTTA 552
+ P AG A +VK+ PS +K+A++ A
Sbjct: 257 ATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 27/102 (26%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH--- 536
+P++SAPGVDIL+ + Y + GT+M+ PH +GV A +++ +
Sbjct: 298 QPEVSAPGVDILSTYP-------------DDSYETLMGTAMATPHVSGVVALIQAAYYQK 344
Query: 537 ----------PDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYG 568
D S + ++ + TA A+ + +A++ YG
Sbjct: 345 YGKILPVGTFDDISKNTVRGILHITADALGPT-GWDADYGYG 385
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
D+ APG I P A + D+ + ++GTSM+ PH AGVAA +P +P
Sbjct: 196 DLFAPGASI-----PSAWYTSDTATQ------TLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 542 SAIKSAIMTTA 552
+++ SAI+ A
Sbjct: 245 ASVASAILNGA 255
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
+P++SAPGVDIL+ + Y + GT+M+ PH +GV A +++ +
Sbjct: 218 QPEVSAPGVDILSTYP-------------DDSYETLMGTAMATPHVSGVVALIQAAY 261
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
+P++SAPGVDIL+ + Y + GT+M+ PH +GV A +++ +
Sbjct: 220 QPEVSAPGVDILSTYP-------------DDSYETLMGTAMATPHVSGVVALIQAAY 263
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
+P++SAPGVDIL+ + Y + GT+M+ PH +GV A +++ +
Sbjct: 229 QPEVSAPGVDILSTYP-------------DDSYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
+P++SAPGVDIL+ + Y + GT+M+ PH +GV A +++ +
Sbjct: 298 QPEVSAPGVDILSTYP-------------DDSYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
+P++SAPGVDIL+ + Y + GT+M+ PH +GV A +++ +
Sbjct: 298 QPEVSAPGVDILSTYP-------------DDSYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
+P++SAPGVDIL+ + Y + GT+M+ PH +GV A +++ +
Sbjct: 298 QPEVSAPGVDILSTYP-------------DDSYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
+P++SAPGVDIL+ + Y + GT+M+ PH +GV A +++ +
Sbjct: 229 QPEVSAPGVDILSTYP-------------DDSYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
+P++SAPGVDIL+ + Y + GT+M+ PH +GV A +++ +
Sbjct: 295 QPEVSAPGVDILSTYP-------------DDSYETLMGTAMATPHVSGVVALIQAAY 338
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
+P++SAPGVDIL+ + Y + GT M+ PH +GV A +++ +
Sbjct: 218 QPEVSAPGVDILSTYP-------------DDSYETLMGTXMATPHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
+P++SAPGVDIL+ + Y + GT M+ PH +GV A +++ +
Sbjct: 218 QPEVSAPGVDILSTYP-------------DDSYETLMGTCMATPHVSGVVALIQAAY 261
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 463 VVGFSSRGPNAIVPE--ILKPD--ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGT 518
V FSSRG + I K D ISAPG + + + Y ISGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTW-------------FDGGYATISGT 248
Query: 519 SMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 552
SM+ PHAAG+AA + + P S ++ + T A
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRA 282
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 160 DTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGV 219
++ D +GHG+H A +A N + YGV P + AYKV G D +G
Sbjct: 63 NSCTDRQGHGTHVAGSALANGGTGSGVYGV--------APEADLWAYKVL---GDDGSGY 111
Query: 220 LGAFDDAIADGVDVIT-----ISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP 274
+AI D T + I I+ +A KGVL + +AGNSGP
Sbjct: 112 ADDIAEAIRHAGDQATALNTKVVINMSLGSSGESSLITNAVDYAYDKGVLIIAAAGNSGP 171
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 27/120 (22%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNII--SGTSMSCPHAAGVAAYVKSFH- 536
K I APG DIL A KP I SGTS + P +GVAA + S
Sbjct: 198 KQGILAPGKDILGA---------------KPNGGTIRLSGTSFATPIVSGVAALLLSLQI 242
Query: 537 -----PDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDY 591
PD P +K+A++ +A N K+T+ + G +N + AI L ET +D
Sbjct: 243 KRGEKPD--PQKVKNALLASATPCN-PKDTDDQSRCLMGKLNILDAIE-HLTGETMSEDL 298
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYV----KSFHPD 538
++APG +IL+ + QA + Y + +GTSM+ PH +GVAA V S
Sbjct: 247 LAAPGTNILSTID-VGQAG-----PVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 539 WSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
+PS + ++ T S N + GSG V+ A+N
Sbjct: 301 LTPSELSDILVRTT----SRFNGRLDRGLGSGIVDANAAVN 337
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYV----KSFHPD 538
++APG +IL+ + QA + Y + +GTSM+ PH +GVAA V S
Sbjct: 247 LAAPGTNILSTID-VGQAG-----PVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 539 WSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
+PS + ++ T S N + GSG V+ A+N
Sbjct: 301 LTPSELSDILVRTT----SRFNGRLDRGLGSGIVDANAAVN 337
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 511 KYNIISGTSMSCPHAAGVAAY----VKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFA 566
K + +GTS + PH AG A +K + ++SP +IK AI TA + FA
Sbjct: 454 KSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD----PFA 509
Query: 567 YGSGHVNPVKAINPGLVYETFKQDYIKMLCNIGYDESK 604
G G +N KA + K + ++ +G + K
Sbjct: 510 QGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNNADK 547
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 13/53 (24%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS 534
D+ APGVDI++ + +Y +SGTSM+ PH AG+AA + S
Sbjct: 202 DVVAPGVDIVSTIT-------------GNRYAYMSGTSMASPHVAGLAALLAS 241
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 22/159 (13%)
Query: 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAY 206
K+I + YD D HG+H A A+ E +A+ G A G P+ RI A
Sbjct: 52 KVIKGYDFVDNDYD-PMDLNNHGTHVAGIAAA-ETNNAT------GIA-GMAPNTRILAV 102
Query: 207 KVCFPGGCDSAGVLGAFDDAI---AD-GVDVITISIGGDSAVDFSEDAISIGAFHAMAKG 262
+ G +G L DAI AD G +VI +S+G D E+A++ +A KG
Sbjct: 103 RALDRNG---SGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKG 155
Query: 263 VLTLNSAGNSGPGLTASVAPWLMSVAASTTDRLFVDKVA 301
+ + +AGN+G T A + +A D+ D++A
Sbjct: 156 SVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY--DRLA 192
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI PG DIL+ + + SI SGTSM+ PH AG+AAY+ + +
Sbjct: 200 DIFGPGTDILSTWIGGSTRSI-------------SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 542 SAIK 545
SA +
Sbjct: 247 SACR 250
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
D++APG I + + AS+ SGTSM+ PH AGVA + S S
Sbjct: 201 DVAAPGSSIYSTYPTSTYASL-------------SGTSMATPHVAGVAGLLASQGR--SA 245
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAI 578
S I++AI TA K + + G VN KA+
Sbjct: 246 SNIRAAIENTA-----DKISGTGTYWAKGRVNAYKAV 277
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 511 KYNIISGTSMSCPHAAGVAAYV 532
+ N ISGTSM+ PH AG+AAY+
Sbjct: 217 RTNTISGTSMATPHIAGLAAYL 238
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI PG IL+ + + SI SGTSM+ PH AG+AAY+ + +
Sbjct: 200 DIFGPGTSILSTWIGGSTRSI-------------SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 542 SAIK 545
SA +
Sbjct: 247 SACR 250
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI PG IL+ + + SI SGTSM+ PH AG+AAY+ + +
Sbjct: 200 DIFGPGTSILSTWIGGSTRSI-------------SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 542 SAIK 545
SA +
Sbjct: 247 SACR 250
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
D++APG I + + AS+ SGTSM+ PH AGVA + S S
Sbjct: 201 DVAAPGSWIYSTYPTSTYASL-------------SGTSMATPHVAGVAGLLASQGR--SA 245
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAI 578
S I++AI TA K + + G VN KA+
Sbjct: 246 SNIRAAIENTA-----DKISGTGTYWAKGRVNAYKAV 277
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 488 VDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAA 530
VD+ A S + A D Y ISGTSM+ PH AGVAA
Sbjct: 195 VDLFAPGSQIKSAWYDG------GYKTISGTSMATPHVAGVAA 231
>pdb|1KOP|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase
pdb|1KOP|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase
pdb|1KOQ|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase
pdb|1KOQ|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase
Length = 223
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 595 LCNIGYDESKVRIISGDGSACPKGSDKAPPKDLNY-PSMAAQVSSGKSFVVNFPRTVTNV 653
LC+ G ++S V I S K P +NY PSM ++G + VN+P +
Sbjct: 24 LCSTGKNQSPVNITE-------TVSGKLPAIKVNYKPSMVDVENNGHTIQVNYPEGGNTL 76
Query: 654 GVANSTYRAK-----VLQNSKISIKVVPDVLSFKSLNEKKS 689
V TY K V ++I + P F L+E K
Sbjct: 77 TVNGRTYTLKQFHFHVPSENQIKGRTFPMEAHFVHLDENKQ 117
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 68/208 (32%), Gaps = 41/208 (19%)
Query: 82 TRSWDFMGL--NLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGG 139
+R WD + N + +N + +IDTG+ + +
Sbjct: 100 SRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKN-----------NFSTDS 148
Query: 140 KNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVP 199
KN N G D +GHG+ + S N G G P
Sbjct: 149 KNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSAN------------GKLIGVAP 196
Query: 200 SGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGG--------------DSAVD 245
+ + Y+V + V A A DG VI IS+G D V+
Sbjct: 197 NNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVE 256
Query: 246 FSEDAISIGAFHAMAKGVLTLNSAGNSG 273
+ DA+ +A K + + +AGN G
Sbjct: 257 Y--DALQKAINYAKKKKSIVVAAAGNDG 282
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 482 DISAPGVDILAAFSPLAQASIDS--EDKRKPKYNIIS-----------GTSMSCPHAAG- 527
DI+APG +F+ L Q +D + K NI++ GTS++ P +G
Sbjct: 337 DIAAPG----GSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYIYQAGTSLATPKVSGA 392
Query: 528 VAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
+A + +H + P + + +SKN + YG G ++ KA+N
Sbjct: 393 LALIIDKYHLEKHPDKA----IELLYQHGTSKNNKPFSRYGHGELDVYKALN 440
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
DI APG +IL+ + N ISGTSM+ PH G+ AY+
Sbjct: 203 DIFAPGSNILSTW-------------IGGTTNTISGTSMATPHIVGLGAYLAGLE 244
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD 538
DI APGV I + + +DS Y +SGT+M+ PH AG A + + D
Sbjct: 226 DIVAPGVGIKSTY-------LDS------GYAELSGTAMAAPHVAGALALIINLAED 269
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 26/122 (21%)
Query: 164 DEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAF 223
D GHG+H A T + E G G G P + K D +G +G
Sbjct: 82 DNNGHGTHVAGTVAAAE--------TGSGVV-GVAPKADLFIIKAL---SGDGSGEMGWI 129
Query: 224 DDAIADGVD----------VITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSG 273
AI VD +IT+S+GG + + DA+ +A++ V + +AGN G
Sbjct: 130 AKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVXAAGNEG 185
Query: 274 PG 275
G
Sbjct: 186 DG 187
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD 538
DI APGV I + + +DS Y +SGT+M+ PH AG A + + D
Sbjct: 226 DIVAPGVGIKSTY-------LDS------GYAELSGTAMAAPHVAGALALIINLAED 269
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 26/122 (21%)
Query: 164 DEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAF 223
D GHG+H A T + E G G G P + K D +G +G
Sbjct: 82 DNNGHGTHVAGTVAAAE--------TGSGVV-GVAPKADLFIIKAL---SGDGSGEMGWI 129
Query: 224 DDAIADGVD----------VITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSG 273
AI VD +IT+S+GG + + DA+ +A++ V + +AGN G
Sbjct: 130 AKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVXAAGNEG 185
Query: 274 PG 275
G
Sbjct: 186 DG 187
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 68/208 (32%), Gaps = 41/208 (19%)
Query: 82 TRSWDFMGL--NLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGG 139
+R WD + N + +N + +IDTG+ + +
Sbjct: 124 SRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKN-----------NFSTDS 172
Query: 140 KNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVP 199
KN N G D +GHG+ + S N G G P
Sbjct: 173 KNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSAN------------GKLIGVAP 220
Query: 200 SGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGG--------------DSAVD 245
+ + Y+V + V A A DG VI IS+G D V+
Sbjct: 221 NNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVE 280
Query: 246 FSEDAISIGAFHAMAKGVLTLNSAGNSG 273
+ DA+ +A K + + +AGN G
Sbjct: 281 Y--DALQKAINYAKKKKSIVVAAAGNDG 306
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 482 DISAPGVDILAAFSPLAQASIDS--EDKRKPKYNIIS-----------GTSMSCPHAAG- 527
DI+APG +F+ L Q +D + K NI++ GT+++ P +G
Sbjct: 361 DIAAPG----GSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYIYQAGTALATPKVSGA 416
Query: 528 VAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
+A + +H + P + + +SKN + YG G ++ KA+N
Sbjct: 417 LALIIDKYHLEKHPDKA----IELLYQHGTSKNNKPFSRYGHGELDVYKALN 464
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD 538
DI APGV I + + +DS Y +SGT+M+ PH AG A + + D
Sbjct: 226 DIVAPGVGIKSTY-------LDS------GYAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD 538
DI APGV I + + +DS Y +SGT+M+ PH AG A + + D
Sbjct: 208 DIVAPGVGIKSTY-------LDS------GYAELSGTAMAAPHVAGALALIINLAED 251
>pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|B Chain B, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|C Chain C, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
Length = 282
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 562 EAEFAYGS-GHVNPVKAINPGLVYETFKQDYIKMLCNIGYDES 603
E E +G G+V VK +NP +++ + DYI ++ +G E
Sbjct: 131 EKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGED 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,679,247
Number of Sequences: 62578
Number of extensions: 927113
Number of successful extensions: 2418
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2132
Number of HSP's gapped (non-prelim): 208
length of query: 726
length of database: 14,973,337
effective HSP length: 106
effective length of query: 620
effective length of database: 8,340,069
effective search space: 5170842780
effective search space used: 5170842780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)