Query 041951
Match_columns 726
No_of_seqs 388 out of 2834
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 12:24:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 5.7E-51 1.2E-55 435.6 29.0 285 77-553 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 1.3E-49 2.8E-54 442.1 22.6 290 89-584 302-618 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 3.8E-49 8.3E-54 412.3 22.7 269 98-579 1-274 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 9E-49 2E-53 406.4 23.4 241 95-556 1-254 (255)
5 cd07478 Peptidases_S8_CspA-lik 100.0 7.7E-48 1.7E-52 428.5 30.4 398 99-570 1-455 (455)
6 cd07497 Peptidases_S8_14 Pepti 100.0 1.8E-48 3.9E-53 413.3 23.1 285 101-552 1-311 (311)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 5.8E-48 1.2E-52 419.8 26.9 306 93-579 1-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 7.6E-47 1.6E-51 404.8 25.9 278 89-581 1-300 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 7.2E-46 1.6E-50 386.6 24.6 247 94-559 2-256 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 5.2E-45 1.1E-49 387.9 27.8 274 101-577 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 2.2E-45 4.7E-50 377.7 23.1 232 104-570 1-239 (239)
12 cd07483 Peptidases_S8_Subtilis 100.0 8.2E-45 1.8E-49 384.3 23.2 258 102-553 1-291 (291)
13 cd07493 Peptidases_S8_9 Peptid 100.0 4.6E-44 1E-48 373.6 24.6 242 103-553 1-261 (261)
14 cd04857 Peptidases_S8_Tripepti 100.0 1E-43 2.2E-48 383.8 26.9 218 163-555 182-412 (412)
15 cd07481 Peptidases_S8_Bacillop 100.0 8.3E-44 1.8E-48 372.3 24.4 244 101-553 1-264 (264)
16 cd07487 Peptidases_S8_1 Peptid 100.0 4.8E-43 1E-47 366.7 24.5 253 101-553 1-264 (264)
17 cd07485 Peptidases_S8_Fervidol 100.0 1.3E-42 2.8E-47 365.0 24.4 258 93-551 1-273 (273)
18 cd07494 Peptidases_S8_10 Pepti 100.0 1.6E-42 3.4E-47 366.9 24.5 160 86-292 6-174 (298)
19 cd04847 Peptidases_S8_Subtilis 100.0 8.5E-43 1.8E-47 369.8 19.5 262 104-553 1-291 (291)
20 cd04077 Peptidases_S8_PCSK9_Pr 100.0 3.5E-42 7.7E-47 358.3 23.7 230 94-554 17-255 (255)
21 KOG1153 Subtilisin-related pro 100.0 8.4E-43 1.8E-47 361.7 17.4 319 2-553 81-461 (501)
22 cd07484 Peptidases_S8_Thermita 100.0 5.2E-42 1.1E-46 358.1 23.6 244 86-556 14-260 (260)
23 cd07490 Peptidases_S8_6 Peptid 100.0 9.1E-42 2E-46 355.0 23.6 248 103-553 1-254 (254)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 2.7E-41 5.8E-46 359.0 25.3 275 97-553 2-293 (293)
25 cd07496 Peptidases_S8_13 Pepti 100.0 2.8E-41 6.1E-46 357.2 24.3 256 103-551 1-285 (285)
26 cd07498 Peptidases_S8_15 Pepti 100.0 3.4E-41 7.3E-46 348.2 22.1 238 104-551 1-242 (242)
27 cd07480 Peptidases_S8_12 Pepti 100.0 4.7E-41 1E-45 357.3 23.3 146 96-276 2-172 (297)
28 cd04843 Peptidases_S8_11 Pepti 100.0 1E-40 2.2E-45 349.2 22.4 245 89-553 3-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 4.4E-40 9.5E-45 343.4 24.5 249 102-553 2-259 (259)
30 PF00082 Peptidase_S8: Subtila 100.0 3.6E-41 7.7E-46 355.8 15.9 271 105-579 1-282 (282)
31 cd07477 Peptidases_S8_Subtilis 100.0 4.6E-40 1E-44 336.7 23.3 224 103-551 1-229 (229)
32 cd04059 Peptidases_S8_Protein_ 100.0 6.7E-40 1.4E-44 349.0 19.7 248 88-553 26-297 (297)
33 cd07491 Peptidases_S8_7 Peptid 100.0 7E-40 1.5E-44 337.4 18.7 150 101-292 2-171 (247)
34 cd07492 Peptidases_S8_8 Peptid 100.0 4.3E-39 9.3E-44 328.1 22.1 220 103-553 1-222 (222)
35 cd07482 Peptidases_S8_Lantibio 100.0 6.8E-39 1.5E-43 340.7 22.4 151 103-276 1-159 (294)
36 KOG4266 Subtilisin kexin isozy 100.0 1.3E-37 2.9E-42 330.6 23.6 346 3-580 51-466 (1033)
37 cd04848 Peptidases_S8_Autotran 100.0 1E-37 2.2E-42 326.5 21.0 241 100-553 1-267 (267)
38 KOG1114 Tripeptidyl peptidase 100.0 2.5E-34 5.4E-39 318.2 24.6 352 166-725 310-687 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 7.6E-33 1.6E-37 284.3 15.1 114 161-292 32-160 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 8.8E-31 1.9E-35 268.3 22.8 157 104-292 1-167 (241)
41 COG1404 AprE Subtilisin-like s 99.9 1.2E-23 2.5E-28 239.0 23.1 266 93-579 131-420 (508)
42 KOG3526 Subtilisin-like propro 99.8 1.2E-19 2.7E-24 184.5 9.0 169 93-289 152-335 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 1.2E-16 2.5E-21 174.3 15.2 99 193-294 82-198 (361)
44 PF05922 Inhibitor_I9: Peptida 98.9 3.7E-09 8E-14 89.7 8.2 77 3-80 1-82 (82)
45 cd02120 PA_subtilisin_like PA_ 98.8 5.2E-08 1.1E-12 90.0 11.7 110 300-414 2-120 (126)
46 cd02133 PA_C5a_like PA_C5a_lik 98.7 9E-08 2E-12 90.4 9.8 108 320-473 25-142 (143)
47 PF06280 DUF1034: Fn3-like dom 98.5 1.7E-06 3.8E-11 78.1 12.5 88 632-723 1-112 (112)
48 COG4934 Predicted protease [Po 98.4 3.3E-06 7.2E-11 100.4 14.3 161 93-289 219-395 (1174)
49 KOG3525 Subtilisin-like propro 98.3 2.5E-06 5.4E-11 94.4 10.3 156 88-277 20-189 (431)
50 PF02225 PA: PA domain; Inter 97.9 1.2E-05 2.6E-10 70.9 4.6 71 340-410 19-101 (101)
51 cd04816 PA_SaNapH_like PA_SaNa 97.8 5.7E-05 1.2E-09 69.3 7.6 75 340-414 29-116 (122)
52 cd04818 PA_subtilisin_1 PA_sub 97.7 0.00011 2.4E-09 66.9 7.8 75 339-414 26-112 (118)
53 cd02129 PA_hSPPL_like PA_hSPPL 97.7 0.00011 2.3E-09 66.6 7.3 84 321-413 20-115 (120)
54 cd02130 PA_ScAPY_like PA_ScAPY 97.6 0.00054 1.2E-08 62.8 10.8 73 341-414 32-116 (122)
55 cd02122 PA_GRAIL_like PA _GRAI 97.6 0.00026 5.7E-09 66.1 8.2 76 339-414 43-132 (138)
56 cd02127 PA_hPAP21_like PA_hPAP 97.5 0.00031 6.8E-09 63.8 8.0 74 340-414 21-110 (118)
57 cd00538 PA PA: Protease-associ 97.5 0.00024 5.2E-09 65.2 7.0 76 339-414 29-120 (126)
58 cd04813 PA_1 PA_1: Protease-as 97.4 0.00034 7.4E-09 63.4 6.9 74 338-413 25-112 (117)
59 cd02124 PA_PoS1_like PA_PoS1_l 97.4 0.0014 3E-08 60.6 10.4 76 338-414 39-123 (129)
60 cd02126 PA_EDEM3_like PA_EDEM3 97.4 0.00046 9.9E-09 63.6 7.0 74 340-414 27-120 (126)
61 cd02132 PA_GO-like PA_GO-like: 97.2 0.00082 1.8E-08 63.1 7.2 72 340-414 48-133 (139)
62 cd04817 PA_VapT_like PA_VapT_l 97.2 0.00092 2E-08 62.3 6.9 66 348-413 50-134 (139)
63 cd02125 PA_VSR PA_VSR: Proteas 97.2 0.0012 2.6E-08 60.8 7.3 75 340-414 22-121 (127)
64 cd02123 PA_C_RZF_like PA_C-RZF 97.1 0.0012 2.6E-08 62.9 7.3 75 340-414 50-141 (153)
65 cd04819 PA_2 PA_2: Protease-as 97.0 0.0048 1E-07 56.9 10.0 83 320-414 22-121 (127)
66 PF14874 PapD-like: Flagellar- 96.3 0.086 1.9E-06 46.4 12.4 79 643-724 21-99 (102)
67 PF10633 NPCBM_assoc: NPCBM-as 94.7 0.15 3.4E-06 42.5 7.6 57 642-698 5-62 (78)
68 cd04815 PA_M28_2 PA_M28_2: Pro 93.5 0.22 4.8E-06 46.4 6.8 65 350-414 35-128 (134)
69 PF11614 FixG_C: IG-like fold 93.3 0.67 1.5E-05 42.0 9.7 56 643-699 32-87 (118)
70 cd04822 PA_M28_1_3 PA_M28_1_3: 92.8 0.26 5.6E-06 46.7 6.2 61 321-387 20-103 (151)
71 cd02128 PA_TfR PA_TfR: Proteas 92.3 0.18 3.8E-06 49.3 4.4 65 350-414 51-157 (183)
72 cd04820 PA_M28_1_1 PA_M28_1_1: 92.0 0.35 7.6E-06 45.0 5.9 58 321-384 22-96 (137)
73 PF06030 DUF916: Bacterial pro 91.8 2.6 5.6E-05 38.4 11.2 69 642-712 27-119 (121)
74 cd04814 PA_M28_1 PA_M28_1: Pro 91.5 0.39 8.5E-06 45.0 5.6 59 320-384 19-100 (142)
75 COG1470 Predicted membrane pro 89.4 2.8 6E-05 46.2 10.6 70 643-712 398-468 (513)
76 KOG2442 Uncharacterized conser 84.5 2.8 6.1E-05 46.3 7.3 65 350-414 91-169 (541)
77 PF00345 PapD_N: Pili and flag 83.9 13 0.00027 33.7 10.5 66 645-712 17-89 (122)
78 cd02121 PA_GCPII_like PA_GCPII 82.0 1.7 3.7E-05 43.9 4.3 36 350-385 67-107 (220)
79 KOG1114 Tripeptidyl peptidase 81.8 0.96 2.1E-05 53.4 2.7 25 97-121 76-100 (1304)
80 cd02131 PA_hNAALADL2_like PA_h 81.3 1.5 3.2E-05 41.3 3.3 34 351-384 37-75 (153)
81 TIGR02745 ccoG_rdxA_fixG cytoc 79.6 10 0.00022 42.5 9.8 55 643-698 347-401 (434)
82 COG1470 Predicted membrane pro 78.5 25 0.00055 39.1 11.8 55 643-698 285-345 (513)
83 PF00635 Motile_Sperm: MSP (Ma 72.4 29 0.00064 30.3 9.1 53 643-698 19-71 (109)
84 cd04821 PA_M28_1_2 PA_M28_1_2: 63.0 18 0.00039 34.6 5.9 37 347-383 42-102 (157)
85 smart00635 BID_2 Bacterial Ig- 62.0 26 0.00056 29.2 6.1 40 671-715 4-43 (81)
86 PF07718 Coatamer_beta_C: Coat 59.5 90 0.0019 29.2 9.5 68 643-712 70-138 (140)
87 PF12690 BsuPI: Intracellular 55.8 30 0.00065 29.1 5.4 54 644-698 2-72 (82)
88 KOG4628 Predicted E3 ubiquitin 55.6 23 0.0005 38.2 5.8 74 341-414 63-151 (348)
89 PF07705 CARDB: CARDB; InterP 55.3 1E+02 0.0023 26.0 9.2 52 642-697 19-72 (101)
90 PF07610 DUF1573: Protein of u 53.8 47 0.001 24.3 5.6 44 648-694 2-45 (45)
91 TIGR00845 caca sodium/calcium 45.8 1.9E+02 0.0041 35.7 11.8 63 630-698 407-476 (928)
92 PLN03080 Probable beta-xylosid 44.9 59 0.0013 39.5 7.7 76 643-721 685-778 (779)
93 PF00927 Transglut_C: Transglu 39.6 2.4E+02 0.0052 24.6 9.0 54 643-698 16-78 (107)
94 TIGR01451 B_ant_repeat conserv 39.5 1.1E+02 0.0025 23.2 5.9 38 642-681 12-50 (53)
95 PF14016 DUF4232: Protein of u 39.1 3E+02 0.0065 25.0 10.1 78 642-722 18-112 (131)
96 PRK13203 ureB urease subunit b 34.7 98 0.0021 27.1 5.3 47 644-692 20-81 (102)
97 PRK15098 beta-D-glucoside gluc 34.3 93 0.002 37.8 7.1 54 642-698 667-729 (765)
98 cd00407 Urease_beta Urease bet 34.0 1.1E+02 0.0023 26.9 5.4 47 644-692 20-81 (101)
99 PRK13202 ureB urease subunit b 33.9 1E+02 0.0023 27.1 5.3 47 644-692 21-82 (104)
100 TIGR00192 urease_beta urease, 31.3 1.1E+02 0.0025 26.7 5.1 47 644-692 20-81 (101)
101 PF02845 CUE: CUE domain; Int 30.6 42 0.00091 24.1 2.1 23 529-551 5-27 (42)
102 PRK13205 ureB urease subunit b 30.5 71 0.0015 29.9 4.0 48 644-693 20-82 (162)
103 PF00699 Urease_beta: Urease b 30.1 1.1E+02 0.0024 26.7 4.8 48 643-692 18-80 (100)
104 PRK15019 CsdA-binding activato 29.9 45 0.00096 31.5 2.7 33 513-546 77-109 (147)
105 KOG3920 Uncharacterized conser 29.6 57 0.0012 30.8 3.2 72 339-411 73-162 (193)
106 PF04744 Monooxygenase_B: Mono 29.5 3.7E+02 0.0081 29.3 9.7 51 642-696 263-335 (381)
107 cd08523 Reeler_cohesin_like Do 29.3 4.5E+02 0.0097 24.1 10.3 20 679-698 75-94 (124)
108 TIGR03391 FeS_syn_CsdE cystein 28.6 49 0.0011 30.9 2.7 33 513-546 72-104 (138)
109 PF13940 Ldr_toxin: Toxin Ldr, 27.2 45 0.00098 22.8 1.6 13 520-532 14-26 (35)
110 PRK09296 cysteine desufuration 26.6 49 0.0011 30.9 2.3 33 513-546 67-99 (138)
111 PF01345 DUF11: Domain of unkn 26.5 1.4E+02 0.0029 24.3 4.8 31 642-672 41-72 (76)
112 PRK13201 ureB urease subunit b 26.3 1.5E+02 0.0033 27.2 5.3 48 644-693 20-82 (136)
113 PF13598 DUF4139: Domain of un 25.8 3.3E+02 0.0072 28.9 9.1 25 643-667 243-267 (317)
114 PF05506 DUF756: Domain of unk 24.2 4.3E+02 0.0094 22.2 9.3 46 644-694 20-65 (89)
115 COG2166 sufE Cysteine desulfur 24.1 62 0.0013 30.4 2.5 31 514-545 73-103 (144)
116 PF02657 SufE: Fe-S metabolism 23.2 72 0.0016 29.2 2.8 33 514-547 59-91 (125)
117 PF05753 TRAP_beta: Translocon 23.1 4.9E+02 0.011 25.5 8.7 55 642-698 38-99 (181)
118 PF04255 DUF433: Protein of un 23.0 62 0.0014 25.0 2.0 38 512-549 11-54 (56)
119 PRK13204 ureB urease subunit b 22.0 2E+02 0.0042 27.2 5.2 48 644-693 43-105 (159)
120 smart00546 CUE Domain that may 21.4 1.1E+02 0.0025 21.9 3.0 24 528-551 5-28 (43)
121 PF08260 Kinin: Insect kinin p 20.8 45 0.00097 15.3 0.4 6 465-470 3-8 (8)
122 PF02601 Exonuc_VII_L: Exonucl 20.7 2.5E+02 0.0055 29.9 6.9 73 198-273 39-118 (319)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.7e-51 Score=435.58 Aligned_cols=285 Identities=58% Similarity=0.961 Sum_probs=243.6
Q ss_pred ecccccCCccccCCCccccc-----cCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCccc---CCcee
Q 041951 77 LQLHTTRSWDFMGLNLSITR-----KRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFT---CNNKI 148 (726)
Q Consensus 77 ~~~~~~~s~~~~g~~~~~~~-----~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~---~n~k~ 148 (726)
+++++++++++++++ .+|. ++++|+||+|||||||||++||+|.+.+..+.+..|.+.|..+..+. |++|+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKL 79 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeE
Confidence 468899999999999 6665 49999999999999999999999999888889999999999988875 99999
Q ss_pred EeeeecCCC-----------CCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCC-CCCh
Q 041951 149 IGARYYTPA-----------PYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPG-GCDS 216 (726)
Q Consensus 149 ig~~~~~~~-----------~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-g~~~ 216 (726)
++.++|... +..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 80 IGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 999999432 1356678899999999999999776555566666777999999999999999884 4888
Q ss_pred HHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCc
Q 041951 217 AGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDR 294 (726)
Q Consensus 217 ~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~ 294 (726)
+++++||++|++++++|||||||.... ....+.+..++..+.++|++||+||||+|+... ++.+||+++||+++
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~--- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST--- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc---
Confidence 999999999999999999999999832 456677888888899999999999999996655 88888999998631
Q ss_pred eeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCc
Q 041951 295 LFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGA 374 (726)
Q Consensus 295 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~ 374 (726)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEeccee
Q 041951 375 AGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEA 454 (726)
Q Consensus 375 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 454 (726)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh
Q 041951 455 VKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS 534 (726)
Q Consensus 455 ~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 534 (726)
+||||+|||.+|++++.... ..........|..++|||||||+|||++|||+|
T Consensus 236 ------------------------~~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~ 288 (307)
T cd04852 236 ------------------------LKPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKS 288 (307)
T ss_pred ------------------------CccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHH
Confidence 36799999999999886421 111122236799999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHcccc
Q 041951 535 FHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 535 ~~P~ls~~~ik~~L~~TA~ 553 (726)
++|+|++.+||++|++||+
T Consensus 289 ~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 289 AHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred HCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.3e-49 Score=442.10 Aligned_cols=290 Identities=18% Similarity=0.195 Sum_probs=212.0
Q ss_pred CCCccccc--cCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccc---cccCCCcccCCceeEeeeecCCCCCCCCC
Q 041951 89 GLNLSITR--KRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKG---ACNGGKNFTCNNKIIGARYYTPAPYDTAR 163 (726)
Q Consensus 89 g~~~~~~~--~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g---~~~~g~~f~~n~k~ig~~~~~~~~~~~~~ 163 (726)
+++ ++|+ .+.+|+||+|||||||||++||||.+. +...+....| ....+.+.. +. +.+++|.++ ...+.
T Consensus 302 ~~~-~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~n-i~~n~~el~GrdgiDdD~nG~v--dd-~~G~nfVd~-~~~P~ 375 (639)
T PTZ00262 302 RLD-ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDN-IDVNVKELHGRKGIDDDNNGNV--DD-EYGANFVNN-DGGPM 375 (639)
T ss_pred Cch-HHHHHhhccCCCCcEEEEEccCCCCCChhhhhh-cccccccccCccccccccCCcc--cc-cccccccCC-CCCCC
Confidence 444 5666 467899999999999999999999854 1111111111 111111110 11 233445322 24568
Q ss_pred CCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCC
Q 041951 164 DEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDS 242 (726)
Q Consensus 164 D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~ 242 (726)
|..||||||||||||... +..|+ .||||+|+|+++|+++..+ +..+++++||+||++.|++|||||||+..
T Consensus 376 D~~GHGTHVAGIIAA~gn---N~~Gi-----~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~ 447 (639)
T PTZ00262 376 DDNYHGTHVSGIISAIGN---NNIGI-----VGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDE 447 (639)
T ss_pred CCCCcchHHHHHHhcccc---CCCce-----eeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCC
Confidence 899999999999999753 22344 8999999999999998876 78899999999999999999999999772
Q ss_pred CCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC----------------CC----CCCceEEEecccCCceeeeEEEe
Q 041951 243 AVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT----------------AS----VAPWLMSVAASTTDRLFVDKVAL 302 (726)
Q Consensus 243 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----------------~~----~~p~vitVga~~~~~~~~~~~~~ 302 (726)
....+..++..|.++|++||+||||+|.... |+ ..|++|+|||...+.
T Consensus 448 ----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~-------- 515 (639)
T PTZ00262 448 ----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK-------- 515 (639)
T ss_pred ----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC--------
Confidence 2346677888899999999999999986431 11 234556665542210
Q ss_pred CCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEecc
Q 041951 303 GNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNN 382 (726)
Q Consensus 303 ~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~ 382 (726)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCe
Q 041951 383 EFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPV 462 (726)
Q Consensus 383 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 462 (726)
.....
T Consensus 516 ---------------------------------------------------------------------------~~~~s 520 (639)
T PTZ00262 516 ---------------------------------------------------------------------------NNQYS 520 (639)
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 00012
Q ss_pred eecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHH
Q 041951 463 VVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPS 542 (726)
Q Consensus 463 ~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~ 542 (726)
++.||++|. .++||+|||++|+++.+. +.|..++|||||||||||+||||++++|+|++.
T Consensus 521 ~s~~Snyg~-------~~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSA-------KYCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCC-------CcceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 345566652 134999999999999876 679999999999999999999999999999999
Q ss_pred HHHHHHHccccccCCCCCCCCCcccCC-CCCCccccCCCCcee
Q 041951 543 AIKSAIMTTAWAMNSSKNTEAEFAYGS-GHVNPVKAINPGLVY 584 (726)
Q Consensus 543 ~ik~~L~~TA~~~~~~~~~~~~~~~G~-G~in~~~Al~~~lv~ 584 (726)
+|+++|++||.+++.. +..+|| |+||+.+|++.++-+
T Consensus 581 qV~~iL~~TA~~l~~~-----~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 581 EVIRILKESIVQLPSL-----KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHhCccCCCC-----CCccccCcEEcHHHHHHHHHhc
Confidence 9999999999987654 233343 899999999976654
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=3.8e-49 Score=412.30 Aligned_cols=269 Identities=25% Similarity=0.251 Sum_probs=204.9
Q ss_pred CCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhcc
Q 041951 98 RSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTAS 177 (726)
Q Consensus 98 ~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaa 177 (726)
+++|+||+|||||||||.+||++.+-.... +.+...+..+ .....|..+|||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~--------------------l~~~~~~~~~-~~~~~d~~gHGT~vAgii- 58 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGD--------------------LPGNVNVLGD-LDGGSGGGDEGRAMLEII- 58 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCC--------------------CCcceeeccc-cCCCCCCCchHHHHHHHH-
Confidence 579999999999999999998654321111 1111111111 134567889999999999
Q ss_pred ccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHH
Q 041951 178 GNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFH 257 (726)
Q Consensus 178 g~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~ 257 (726)
.||||+|+|+.+|+. ...+++++||+||++.|++|||||||......+.+..+..++.+
T Consensus 59 -----------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~ 117 (275)
T cd05562 59 -----------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDE 117 (275)
T ss_pred -----------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHH
Confidence 477999999999874 35788999999999999999999999874333334567788888
Q ss_pred hhhC-CcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcc
Q 041951 258 AMAK-GVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISE 333 (726)
Q Consensus 258 a~~~-Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 333 (726)
+.++ |++||+||||+|.... |+..|++|+|||++...........
T Consensus 118 a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~------------------------------- 166 (275)
T cd05562 118 VVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDP------------------------------- 166 (275)
T ss_pred HHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccc-------------------------------
Confidence 8887 9999999999998654 8899999999997644211000000
Q ss_pred cccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcC
Q 041951 334 SCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKEST 413 (726)
Q Consensus 334 ~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 413 (726)
.
T Consensus 167 ------------~------------------------------------------------------------------- 167 (275)
T cd05562 167 ------------A------------------------------------------------------------------- 167 (275)
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred chhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCc-EEe
Q 041951 414 KYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVD-ILA 492 (726)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~-I~s 492 (726)
+ .......+.|+++||+. ++++||||+|||+. +.+
T Consensus 168 -------------------------------~-----------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~ 203 (275)
T cd05562 168 -------------------------------P-----------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTV 203 (275)
T ss_pred -------------------------------c-----------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccC
Confidence 0 00002245678899987 88999999999753 344
Q ss_pred ecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCCCC
Q 041951 493 AFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHV 572 (726)
Q Consensus 493 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~i 572 (726)
.... +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...+. +..||||+|
T Consensus 204 ~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~---d~~~G~G~v 267 (275)
T cd05562 204 DGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPGY---DNASGSGLV 267 (275)
T ss_pred CCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCC---CCCcCcCcc
Confidence 3332 679999999999999999999999999999999999999999999875442 678999999
Q ss_pred CccccCC
Q 041951 573 NPVKAIN 579 (726)
Q Consensus 573 n~~~Al~ 579 (726)
|+.+|++
T Consensus 268 da~~Av~ 274 (275)
T cd05562 268 DADRAVA 274 (275)
T ss_pred cHHHHhh
Confidence 9999986
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=9e-49 Score=406.44 Aligned_cols=241 Identities=25% Similarity=0.336 Sum_probs=198.5
Q ss_pred cccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchh
Q 041951 95 TRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTAS 174 (726)
Q Consensus 95 ~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAG 174 (726)
|+++++|+||+|||||+|||.+||+|.+.. ...+|..+ ....|..||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~-------------------------~~~~~~~~--~~~~d~~gHGT~VAG 53 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK-------------------------ERTNWTNE--KTLDDGLGHGTFVAG 53 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc-------------------------cccccCCC--CCCCCCCCcHHHHHH
Confidence 899999999999999999999999997320 01112111 245578899999999
Q ss_pred hccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHH
Q 041951 175 TASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISI 253 (726)
Q Consensus 175 iaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~ 253 (726)
||+|+.. ...||||+|+|+.+|++.+.+ ...+.++++++||++++++|||||||.+. +.+.++..
T Consensus 54 iIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~~~~~~ 119 (255)
T cd07479 54 VIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMDKPFVD 119 (255)
T ss_pred HHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCCcHHHH
Confidence 9998731 138999999999999998776 56778999999999999999999999872 34456666
Q ss_pred HHHHhhhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEcc
Q 041951 254 GAFHAMAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGK 329 (726)
Q Consensus 254 a~~~a~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~ 329 (726)
++.++.++|++||+||||+|+... |...+++|+|||.+.+
T Consensus 120 ~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------------------------------ 163 (255)
T cd07479 120 KVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------------------------------ 163 (255)
T ss_pred HHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC------------------------------------
Confidence 777888999999999999997532 7778899999875321
Q ss_pred CCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHH
Q 041951 330 EISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISY 409 (726)
Q Consensus 330 ~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 409 (726)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCC----CCCCCccCceEe
Q 041951 410 KESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNA----IVPEILKPDISA 485 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~----~~~~~~KPDI~A 485 (726)
+.++.|||+|++. ...+++||||+|
T Consensus 164 ---------------------------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~a 192 (255)
T cd07479 164 ---------------------------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVT 192 (255)
T ss_pred ---------------------------------------------------CccccccCCCCCcccccCCCCCcCccEEe
Confidence 3468899999652 126789999999
Q ss_pred CCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCC----CCCHHHHHHHHHccccccC
Q 041951 486 PGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHP----DWSPSAIKSAIMTTAWAMN 556 (726)
Q Consensus 486 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~ls~~~ik~~L~~TA~~~~ 556 (726)
||.+|+++... +.|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 193 pG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 193 YGSGVYGSKLK-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred cCCCeeccccC-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 99999987654 5688999999999999999999999998 7999999999999999875
No 5
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=7.7e-48 Score=428.46 Aligned_cols=398 Identities=22% Similarity=0.229 Sum_probs=248.0
Q ss_pred CCCCCcEEEEEeccCCCCCCCCCC-CCCCCCCccccccccCCCcccCCceeEeeeecC---------C-C--CCCCCCCC
Q 041951 99 SVESNLIVGVIDTGIWPESESFSD-EGFGPAPKKWKGACNGGKNFTCNNKIIGARYYT---------P-A--PYDTARDE 165 (726)
Q Consensus 99 ~~G~GVvVaVIDtGid~~Hp~f~d-~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~---------~-~--~~~~~~D~ 165 (726)
++|+||+|||||||||+.||+|++ +|.+++...|++....+..- ....+...+. . + +.....|.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~ 77 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP---GGYYGGGEYTEEIINAALASDNPYDIVPSRDE 77 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC---ccccCceEEeHHHHHHHHhcCCccccCcCCCC
Confidence 479999999999999999999985 46788899998877654321 1112221111 1 1 23455789
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-----------CChHHHHHHHHHHhhC-----
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-----------CDSAGVLGAFDDAIAD----- 229 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-----------~~~~~i~~ai~~A~~~----- 229 (726)
.||||||||||||+... ...+.||||+|+|+++|++...+ +...++++||+|+++.
T Consensus 78 ~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~ 149 (455)
T cd07478 78 NGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELN 149 (455)
T ss_pred CCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhC
Confidence 99999999999998642 12338999999999999998765 4678999999998864
Q ss_pred CCcEEEEcccCCCCCCCcccHHHHHHHHhhhC-CcEEEEccCCCCCCCCCCCCCceEEEecccCCceeeeEEEeCCCeeE
Q 041951 230 GVDVITISIGGDSAVDFSEDAISIGAFHAMAK-GVLTLNSAGNSGPGLTASVAPWLMSVAASTTDRLFVDKVALGNGKAI 308 (726)
Q Consensus 230 g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 308 (726)
.++|||||||.+.+++...++++.+++.+..+ |++||+||||+|.... .....+... ...-...+.++.+...
T Consensus 150 ~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~--h~~~~~~~~----~~~~~ie~~v~~~~~~ 223 (455)
T cd07478 150 KPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQH--HHSGGIVPN----GETKTVELNVGEGEKG 223 (455)
T ss_pred CCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCC--ceeeeeccC----CceEEEEEEECCCCcc
Confidence 47899999999877788888999998887766 9999999999997542 000000000 0001112222222221
Q ss_pred eeEEeccCCCCCceeeEEEccCCccccccc-------------CCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCce
Q 041951 309 SGYSINSFAMKGRRFPLVYGKEISESCQEL-------------SSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAA 375 (726)
Q Consensus 309 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~ 375 (726)
....++........+.++..+......... ....|.... .+....|.-.+.-+ ......|.+
T Consensus 224 ~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i~i~----~~~~~~GiW 298 (455)
T cd07478 224 FNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLIFIR----FKNIKPGIW 298 (455)
T ss_pred eEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEEEEE----ccCCCccce
Confidence 111122111111111111111100000000 000000000 00111122111111 112334666
Q ss_pred EEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEE-ecce-
Q 041951 376 GTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEI-LKTE- 453 (726)
Q Consensus 376 g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~- 453 (726)
-+.+......+.....++|.-.+...+..++ .. ++..++ ....
T Consensus 299 ~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~----~~-------------------------------~~~~tit~Pa~~ 343 (455)
T cd07478 299 KIRLTGVSITDGRFDAWLPSRGLLSENTRFL----EP-------------------------------DPYTTLTIPGTA 343 (455)
T ss_pred EEEEEeccCCCceEEEEecCcCcCCCCCEee----cC-------------------------------CCCceEecCCCC
Confidence 6666665554445555566443332221111 00 222222 1111
Q ss_pred ----eec--CCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHH
Q 041951 454 ----AVK--DFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAG 527 (726)
Q Consensus 454 ----~~~--~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG 527 (726)
.++ +...+.++.||||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||
T Consensus 344 ~~vitVga~~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG 408 (455)
T cd07478 344 RSVITVGAYNQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAG 408 (455)
T ss_pred CCcEEEEEEeCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHH
Confidence 111 22345699999999998 899999999999999999885 679999999999999999
Q ss_pred HHHHHHhcC------CCCCHHHHHHHHHccccccCCCCCCCCCcccCCC
Q 041951 528 VAAYVKSFH------PDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSG 570 (726)
Q Consensus 528 ~aALl~q~~------P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 570 (726)
++|||+|.+ |.|++++||++|++||+++....+| +..||||
T Consensus 409 ~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~~~p--n~~~GyG 455 (455)
T cd07478 409 ACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEYP--NPEWGYG 455 (455)
T ss_pred HHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCCCCCC--CCCCCCC
Confidence 999999865 6679999999999999998754443 6789998
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-48 Score=413.26 Aligned_cols=285 Identities=27% Similarity=0.281 Sum_probs=192.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccC
Q 041951 101 ESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNE 180 (726)
Q Consensus 101 G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~ 180 (726)
|+||+|||||||||++||||.+... ..|+. .|.+...+....++.++....+.|.+||||||||||||+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~------~~d~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~ 70 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKL------KFDYKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRG 70 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCccc------ccCcCCCccCCcCCCCCccCCCCCccccchhHHHHHhccC
Confidence 8999999999999999999974311 01110 1111112223333322222456789999999999999986
Q ss_pred CCCCcccccc-ccceeeecCCcEEEEEEeeCCCC-CChHHHHH-------HHHH--HhhCCCcEEEEcccCCCCCC----
Q 041951 181 VKDASFYGVG-QGTARGGVPSGRIAAYKVCFPGG-CDSAGVLG-------AFDD--AIADGVDVITISIGGDSAVD---- 245 (726)
Q Consensus 181 ~~~~~~~G~~-~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~-------ai~~--A~~~g~dVInlSlG~~~~~~---- 245 (726)
..+.+.+++. ...+.||||+|+|+.+|++...+ .....+.. +++| +.+++++|||||||......
T Consensus 71 ~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~ 150 (311)
T cd07497 71 KMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYA 150 (311)
T ss_pred cccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccccc
Confidence 4332222211 22349999999999999986543 32233333 3344 34679999999999863111
Q ss_pred CcccHHHHHHHHh-hhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCC
Q 041951 246 FSEDAISIGAFHA-MAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKG 320 (726)
Q Consensus 246 ~~~~~~~~a~~~a-~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 320 (726)
...+..+..++.+ .++|+++|+||||+|+... |+.++++|+|||++.....+.
T Consensus 151 ~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~---------------------- 208 (311)
T cd07497 151 PGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF---------------------- 208 (311)
T ss_pred cCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch----------------------
Confidence 1122333333332 3899999999999997643 888999999999754310000
Q ss_pred ceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeeh
Q 041951 321 RRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQ 400 (726)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~ 400 (726)
+++.+
T Consensus 209 --~~~~~------------------------------------------------------------------------- 213 (311)
T cd07497 209 --YLFGY------------------------------------------------------------------------- 213 (311)
T ss_pred --hhhcc-------------------------------------------------------------------------
Confidence 00000
Q ss_pred hhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCcc
Q 041951 401 DSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILK 480 (726)
Q Consensus 401 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 480 (726)
. ....+.++.||||||+. ++++|
T Consensus 214 -------------------------------------------~------------~~~~~~~~~fSs~Gp~~--~g~~k 236 (311)
T cd07497 214 -------------------------------------------L------------PGGSGDVVSWSSRGPSI--AGDPK 236 (311)
T ss_pred -------------------------------------------c------------cCCCCCccccccCCCCc--ccCCC
Confidence 0 01135689999999998 89999
Q ss_pred CceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCC------CCCHHHHHHHHHccc
Q 041951 481 PDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHP------DWSPSAIKSAIMTTA 552 (726)
Q Consensus 481 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~ls~~~ik~~L~~TA 552 (726)
|||+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 237 Pdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 237 PDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999999999876432100 011124799999999999999999999999876 689999999999997
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=5.8e-48 Score=419.77 Aligned_cols=306 Identities=30% Similarity=0.378 Sum_probs=233.9
Q ss_pred cccccCC-CCCCcEEEEEeccCCCCCCCCCCCCCCCCCc-----cccccccCCCcccCCceeEeeeecCCC-CC-CCCCC
Q 041951 93 SITRKRS-VESNLIVGVIDTGIWPESESFSDEGFGPAPK-----KWKGACNGGKNFTCNNKIIGARYYTPA-PY-DTARD 164 (726)
Q Consensus 93 ~~~~~~~-~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~-----~w~g~~~~g~~f~~n~k~ig~~~~~~~-~~-~~~~D 164 (726)
.+|+++. +|+||+|||||||||++||+|.+....+... .+...+..+.....+++++..++|.++ +. ....|
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 3788877 9999999999999999999998654332211 233344445555678889988888433 22 22457
Q ss_pred CcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCC--CC-CChHHHHHHHHHHhhCCCcEEEEcccCC
Q 041951 165 EEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP--GG-CDSAGVLGAFDDAIADGVDVITISIGGD 241 (726)
Q Consensus 165 ~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~--~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~ 241 (726)
..+|||||||||+|......+ ...+.|+||+|+|+.+|+++. .+ .....+++|+++|++.|++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 899999999999998643211 223499999999999999973 33 7788899999999999999999999998
Q ss_pred CCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC------------------CCCCCceEEEecccCCceeeeEEEeC
Q 041951 242 SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT------------------ASVAPWLMSVAASTTDRLFVDKVALG 303 (726)
Q Consensus 242 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~------------------~~~~p~vitVga~~~~~~~~~~~~~~ 303 (726)
.........+..++.++.++|++||+||||+|.... |...+++|+||+....
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~---------- 225 (346)
T cd07475 156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK---------- 225 (346)
T ss_pred CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc----------
Confidence 544355667778888899999999999999986543 2233445555443200
Q ss_pred CCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccC
Q 041951 304 NGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNE 383 (726)
Q Consensus 304 ~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~ 383 (726)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCee
Q 041951 384 FDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVV 463 (726)
Q Consensus 384 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 463 (726)
......+.+
T Consensus 226 -----------------------------------------------------------------------~~~~~~~~~ 234 (346)
T cd07475 226 -----------------------------------------------------------------------VPNPNGGQM 234 (346)
T ss_pred -----------------------------------------------------------------------cCCCCCCcc
Confidence 001223567
Q ss_pred ecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhc----CCCC
Q 041951 464 VGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSF----HPDW 539 (726)
Q Consensus 464 a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~l 539 (726)
+.||+|||+. .+++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|
T Consensus 235 ~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l 299 (346)
T cd07475 235 SGFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKL 299 (346)
T ss_pred CCCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 8999999998 899999999999999988765 57899999999999999999999997 6899
Q ss_pred CHHH----HHHHHHccccccCCC---CCCCCCcccCCCCCCccccCC
Q 041951 540 SPSA----IKSAIMTTAWAMNSS---KNTEAEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 540 s~~~----ik~~L~~TA~~~~~~---~~~~~~~~~G~G~in~~~Al~ 579 (726)
++.+ ||++|++||.+.... +....+..+|+|+||+.+||+
T Consensus 300 ~~~~~~~~ik~~l~~ta~~~~~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 300 SGEELVDLVKNLLMNTATPPLDSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CHHHHHHHHHHHHHhcCCcccccCCCCccCCccccCcchhcHHHhhC
Confidence 9877 788999999953322 112246688999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.6e-47 Score=404.82 Aligned_cols=278 Identities=33% Similarity=0.484 Sum_probs=224.7
Q ss_pred CCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCC---------CCC
Q 041951 89 GLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTP---------APY 159 (726)
Q Consensus 89 g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~---------~~~ 159 (726)
|++ .+|+.+++|+||+|||||+|||++||+|.+. +.+ +.++.+.+++.+ .+.
T Consensus 1 ~v~-~~~~~g~tG~gv~VaViDsGid~~hp~l~~~-~~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~ 61 (312)
T cd07489 1 GVD-KLHAEGITGKGVKVAVVDTGIDYTHPALGGC-FGP-----------------GCKVAGGYDFVGDDYDGTNPPVPD 61 (312)
T ss_pred Chh-hHHhCCCCCCCCEEEEEECCCCCCChhhhcC-CCC-----------------CceeccccccCCcccccccCCCCC
Confidence 355 8999999999999999999999999999854 111 011222222211 123
Q ss_pred CCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcc
Q 041951 160 DTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISI 238 (726)
Q Consensus 160 ~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSl 238 (726)
..+.|..+|||||||||+|.... .|+ .||||+|+|+.+|++...+ .....+++++++|++++++|||+||
T Consensus 62 ~~~~d~~gHGT~vAgiia~~~~~----~~~-----~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~ 132 (312)
T cd07489 62 DDPMDCQGHGTHVAGIIAANPNA----YGF-----TGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASL 132 (312)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCC----Cce-----EEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCC
Confidence 45667899999999999998532 344 9999999999999998666 6777899999999999999999999
Q ss_pred cCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEe
Q 041951 239 GGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSI 313 (726)
Q Consensus 239 G~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 313 (726)
|... .+....+...+.++.++|+++|+||||+|.... |+..|++|+||+.+
T Consensus 133 g~~~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------------------- 188 (312)
T cd07489 133 GGPS--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------------------- 188 (312)
T ss_pred CcCC--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------------------
Confidence 9873 344577777888889999999999999987642 66677888887531
Q ss_pred ccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeec
Q 041951 314 NSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSL 393 (726)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~ 393 (726)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCC
Q 041951 394 PAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNA 473 (726)
Q Consensus 394 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~ 473 (726)
+.||++||+.
T Consensus 189 ----------------------------------------------------------------------~~~s~~g~~~ 198 (312)
T cd07489 189 ----------------------------------------------------------------------SYFSSWGPTN 198 (312)
T ss_pred ----------------------------------------------------------------------CCccCCCCCC
Confidence 4578999988
Q ss_pred CCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcC-CCCCHHHHHHHHHccc
Q 041951 474 IVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH-PDWSPSAIKSAIMTTA 552 (726)
Q Consensus 474 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~ls~~~ik~~L~~TA 552 (726)
+...||||+|||++++++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||
T Consensus 199 --~~~~kpdv~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta 265 (312)
T cd07489 199 --ELYLKPDVAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTA 265 (312)
T ss_pred --CCCcCccEEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 78899999999999999887632 358999999999999999999999999 9999999999999999
Q ss_pred cccCCCCCCC------CCcccCCCCCCccccCCCC
Q 041951 553 WAMNSSKNTE------AEFAYGSGHVNPVKAINPG 581 (726)
Q Consensus 553 ~~~~~~~~~~------~~~~~G~G~in~~~Al~~~ 581 (726)
.++...+... ....+|||+||+.+|++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 266 KPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred ccccccCCCccccCCCCHhhcCcceeeHHHHhcCC
Confidence 9876543221 2368999999999999953
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=7.2e-46 Score=386.60 Aligned_cols=247 Identities=23% Similarity=0.288 Sum_probs=202.6
Q ss_pred ccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccch
Q 041951 94 ITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTA 173 (726)
Q Consensus 94 ~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVA 173 (726)
+|..+++|+||+|||||+|||++||+|.+....+. ..+.. ......|..+||||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-----------------------~~~~~-~~~~~~~~~gHGT~VA 57 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-----------------------FTYAA-AACQDGGASAHGTHVA 57 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-----------------------cCccc-cCCCCCCCCCcHHHHH
Confidence 79999999999999999999999999986422111 00100 0134556789999999
Q ss_pred hhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC--CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHH
Q 041951 174 STASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG--CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAI 251 (726)
Q Consensus 174 Giaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~ 251 (726)
|||+|+.. ..+.||||+|+|+.+|++...+ ++..++++||+||+++|++|||||||...........+
T Consensus 58 gii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l 127 (267)
T cd07476 58 SLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPIL 127 (267)
T ss_pred HHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHH
Confidence 99998742 1238999999999999987654 44678999999999999999999999864333445677
Q ss_pred HHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEcc
Q 041951 252 SIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGK 329 (726)
Q Consensus 252 ~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~ 329 (726)
..++..+.++|+++|+||||+|.... |+..|++|+||+++..
T Consensus 128 ~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------------ 171 (267)
T cd07476 128 ANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------------------------------ 171 (267)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC------------------------------------
Confidence 88888899999999999999997655 8889999999985321
Q ss_pred CCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHH
Q 041951 330 EISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISY 409 (726)
Q Consensus 330 ~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 409 (726)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCc
Q 041951 410 KESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVD 489 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 489 (726)
+.++.||++|+.. .||||+|||.+
T Consensus 172 ---------------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~ 195 (267)
T cd07476 172 ---------------------------------------------------GLPLKFSNWGADY-----RKKGILAPGEN 195 (267)
T ss_pred ---------------------------------------------------CCeeeecCCCCCC-----CCceEEecCCC
Confidence 2356789999764 38899999999
Q ss_pred EEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCC----CCHHHHHHHHHccccccCCCC
Q 041951 490 ILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD----WSPSAIKSAIMTTAWAMNSSK 559 (726)
Q Consensus 490 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----ls~~~ik~~L~~TA~~~~~~~ 559 (726)
|+++.+. +.|..++|||||||||||++|||++.+|. +++++||++|++||+++...+
T Consensus 196 i~~~~~~-------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 196 ILGAALG-------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred ceeecCC-------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 9998765 57999999999999999999999999887 999999999999999997653
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.2e-45 Score=387.85 Aligned_cols=274 Identities=37% Similarity=0.561 Sum_probs=215.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCC--------------CCCCCCCc
Q 041951 101 ESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAP--------------YDTARDEE 166 (726)
Q Consensus 101 G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~--------------~~~~~D~~ 166 (726)
|+||+|||||+|||++||+|.+... .+.++...++|..+. .....|..
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDAT 62 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC------------------CCCceeeeeECccCCCCcccccccccccccCCCCCCC
Confidence 8999999999999999999985421 123444444442210 01234588
Q ss_pred CCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCC
Q 041951 167 GHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVD 245 (726)
Q Consensus 167 gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~ 245 (726)
+|||||||+|+|...+ .. .+.|+||+|+|+.+|+++..+ +...++++||+++++++++|||||||... .
T Consensus 63 ~HGT~vAgiiag~~~n---~~-----~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~ 132 (295)
T cd07474 63 GHGTHVAGIIAGNGVN---VG-----TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N 132 (295)
T ss_pred CcHHHHHHHHhcCCCc---cC-----ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C
Confidence 9999999999988532 22 238999999999999998544 78889999999999999999999999873 2
Q ss_pred CcccHHHHHHHHhhhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCc
Q 041951 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGR 321 (726)
Q Consensus 246 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 321 (726)
...+.+..++.++.++|+++|+||||+|.... |+..+++|+||++.....
T Consensus 133 ~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------- 186 (295)
T cd07474 133 GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------- 186 (295)
T ss_pred CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------
Confidence 24567788888899999999999999987654 777899999998641100
Q ss_pred eeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehh
Q 041951 322 RFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQD 401 (726)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~ 401 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeeccc-CCCCCCCCCCCcc
Q 041951 402 SLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFS-SRGPNAIVPEILK 480 (726)
Q Consensus 402 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fS-S~Gp~~~~~~~~K 480 (726)
........|+ +.|++. ...+|
T Consensus 187 --------------------------------------------------------~~~~~~~~~~s~~~~~~--~~~~k 208 (295)
T cd07474 187 --------------------------------------------------------AEADTVGPSSSRGPPTS--DSAIK 208 (295)
T ss_pred --------------------------------------------------------CCCCceeccCCCCCCCC--CCCcC
Confidence 0001233444 445555 78899
Q ss_pred CceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCC
Q 041951 481 PDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKN 560 (726)
Q Consensus 481 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~ 560 (726)
|||+|||++|+++.... ...|..++|||||||+|||++|||+|++|+|++++||++|++||++....+.
T Consensus 209 pdv~apG~~i~~~~~~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~ 277 (295)
T cd07474 209 PDIVAPGVDIMSTAPGS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG 277 (295)
T ss_pred CCEECCcCceEeeccCC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC
Confidence 99999999999988753 1578999999999999999999999999999999999999999999877544
Q ss_pred CC-CCcccCCCCCCcccc
Q 041951 561 TE-AEFAYGSGHVNPVKA 577 (726)
Q Consensus 561 ~~-~~~~~G~G~in~~~A 577 (726)
.. .+..+|+|+||+.+|
T Consensus 278 ~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 278 VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CcCChhccCcceeccccC
Confidence 32 246899999999987
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-45 Score=377.66 Aligned_cols=232 Identities=26% Similarity=0.417 Sum_probs=192.1
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCC
Q 041951 104 LIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKD 183 (726)
Q Consensus 104 VvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~ 183 (726)
|+|||||||||.+||+|.+. ++..+++.. ....|..+|||||||||+|....
T Consensus 1 V~VavIDsGvd~~hp~l~~~------------------------~~~~~~~~~---~~~~~~~~HGT~vAgiia~~~~~- 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV------------------------VIARLFFAG---PGAPAPSAHGTAVASLLAGAGAQ- 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccC------------------------ccccccCCC---CCCCCCCCCHHHHHHHHhCCCCC-
Confidence 78999999999999999743 111111111 13556889999999999988421
Q ss_pred CccccccccceeeecCCcEEEEEEeeCCCC----CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhh
Q 041951 184 ASFYGVGQGTARGGVPSGRIAAYKVCFPGG----CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAM 259 (726)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g----~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~ 259 (726)
. .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||+.. ...+..++.++.
T Consensus 53 ---------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-----~~~l~~ai~~a~ 117 (239)
T cd05561 53 ---------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-----NALLAAAVAAAA 117 (239)
T ss_pred ---------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-----CHHHHHHHHHHH
Confidence 1 6999999999999988642 67788999999999999999999999762 346777788899
Q ss_pred hCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCccccc
Q 041951 260 AKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQ 336 (726)
Q Consensus 260 ~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (726)
++|+++|+||||+|.... |+..+++|+|++++.+
T Consensus 118 ~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------------------------- 154 (239)
T cd05561 118 ARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------------------------- 154 (239)
T ss_pred HCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-------------------------------------------
Confidence 999999999999997643 8888999999875321
Q ss_pred ccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchh
Q 041951 337 ELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYI 416 (726)
Q Consensus 337 ~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 416 (726)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCC
Q 041951 417 FYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSP 496 (726)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 496 (726)
+.++.||++|+.. ||+|||.+|+++.+.
T Consensus 155 --------------------------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~ 182 (239)
T cd05561 155 --------------------------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG 182 (239)
T ss_pred --------------------------------------------CCccccCCCCCcc--------eEEccccceecccCC
Confidence 3457899999876 999999999987654
Q ss_pred CccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCC
Q 041951 497 LAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSG 570 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 570 (726)
+.|..++|||||||||||++|||+|++| +++++||++|++||+++...+. +..||||
T Consensus 183 -------------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~~---d~~~G~G 239 (239)
T cd05561 183 -------------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPGR---DPVFGYG 239 (239)
T ss_pred -------------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCCc---CCCcCCC
Confidence 6799999999999999999999999999 9999999999999999876653 6789998
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=8.2e-45 Score=384.31 Aligned_cols=258 Identities=24% Similarity=0.374 Sum_probs=186.2
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCC-CCCccccccccCCCccc------------CCceeEeeeecC-------CCCCCC
Q 041951 102 SNLIVGVIDTGIWPESESFSDEGFG-PAPKKWKGACNGGKNFT------------CNNKIIGARYYT-------PAPYDT 161 (726)
Q Consensus 102 ~GVvVaVIDtGid~~Hp~f~d~g~~-~~~~~w~g~~~~g~~f~------------~n~k~ig~~~~~-------~~~~~~ 161 (726)
|+|+|||||||||++||+|++.-.. +.....++..+.+.+|. ..+++++...+. .++...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 6899999999999999999854110 00111123333332221 111111111110 011233
Q ss_pred CCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCC
Q 041951 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGD 241 (726)
Q Consensus 162 ~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~ 241 (726)
+.+..+|||||||||+|... +..|+ .||||+|+|+.+|++........++++||+||++.|++|||||||..
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~---n~~g~-----~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~ 152 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRD---NGIGI-----DGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKS 152 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCC---CCCce-----EEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 44688999999999998853 22344 89999999999999865446778899999999999999999999976
Q ss_pred CCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----CC--------CCCceEEEecccCCceeeeEEEeCCCeeE
Q 041951 242 SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----AS--------VAPWLMSVAASTTDRLFVDKVALGNGKAI 308 (726)
Q Consensus 242 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----~~--------~~p~vitVga~~~~~~~~~~~~~~~g~~~ 308 (726)
. ......+..++..+.++|+++|+||||+|.... |. ..+++|+||++...
T Consensus 153 ~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~--------------- 215 (291)
T cd07483 153 F--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK--------------- 215 (291)
T ss_pred C--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc---------------
Confidence 2 223345677778888999999999999986542 11 12345555543211
Q ss_pred eeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccc
Q 041951 309 SGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVS 388 (726)
Q Consensus 309 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~ 388 (726)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccC
Q 041951 389 FVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSS 468 (726)
Q Consensus 389 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS 468 (726)
.....++.||+
T Consensus 216 ---------------------------------------------------------------------~~~~~~~~~Sn 226 (291)
T cd07483 216 ---------------------------------------------------------------------YENNLVANFSN 226 (291)
T ss_pred ---------------------------------------------------------------------CCcccccccCC
Confidence 00124688999
Q ss_pred CCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 041951 469 RGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAI 548 (726)
Q Consensus 469 ~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L 548 (726)
+|+. +|||.|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|
T Consensus 227 ~G~~-------~vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L 286 (291)
T cd07483 227 YGKK-------NVDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQII 286 (291)
T ss_pred CCCC-------ceEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9974 45999999999998765 679999999999999999999999999999999999999
Q ss_pred Hcccc
Q 041951 549 MTTAW 553 (726)
Q Consensus 549 ~~TA~ 553 (726)
++||.
T Consensus 287 ~~ta~ 291 (291)
T cd07483 287 LESGV 291 (291)
T ss_pred HHhCC
Confidence 99984
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.6e-44 Score=373.64 Aligned_cols=242 Identities=30% Similarity=0.382 Sum_probs=195.1
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCC
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVK 182 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~ 182 (726)
||+|||||||||++||+|..... ..+.++.+.++|..+......|..+|||||||||+|+..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~HGT~vagiia~~~~- 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------FKNLRILGEYDFVDNSNNTNYTDDDHGTAVLSTMAGYTP- 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------ccCCceeeeecCccCCCCCCCCCCCchhhhheeeeeCCC-
Confidence 79999999999999999952210 013457777777443222236788999999999998742
Q ss_pred CCccccccccceeeecCCcEEEEEEeeCCCC---CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCC-----------cc
Q 041951 183 DASFYGVGQGTARGGVPSGRIAAYKVCFPGG---CDSAGVLGAFDDAIADGVDVITISIGGDSAVDF-----------SE 248 (726)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~-----------~~ 248 (726)
+...||||+|+|+.+|+..... .....+++|+++|.+.+++|||||||....... ..
T Consensus 63 ---------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~ 133 (261)
T cd07493 63 ---------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKT 133 (261)
T ss_pred ---------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccc
Confidence 2348999999999999865432 345678999999999999999999998732111 12
Q ss_pred cHHHHHHHHhhhCCcEEEEccCCCCCCC---C--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCcee
Q 041951 249 DAISIGAFHAMAKGVLTLNSAGNSGPGL---T--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRF 323 (726)
Q Consensus 249 ~~~~~a~~~a~~~Gv~vV~AAGN~g~~~---~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 323 (726)
..+..++..+.++|+++|+||||+|... . |+..+++|+|||...+
T Consensus 134 ~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 183 (261)
T cd07493 134 SFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------------------------ 183 (261)
T ss_pred hHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC------------------------------
Confidence 3567778888999999999999999874 2 8888999999985321
Q ss_pred eEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhH
Q 041951 324 PLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSL 403 (726)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g 403 (726)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCce
Q 041951 404 SSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDI 483 (726)
Q Consensus 404 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI 483 (726)
+.++.||++||+. ++++||||
T Consensus 184 ---------------------------------------------------------~~~~~~S~~G~~~--~~~~~pdi 204 (261)
T cd07493 184 ---------------------------------------------------------GNKASFSSIGPTA--DGRLKPDV 204 (261)
T ss_pred ---------------------------------------------------------CCCCccCCcCCCC--CCCcCCce
Confidence 2457899999987 89999999
Q ss_pred EeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 484 SAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 484 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
+|||.++++.... +.|..++|||||||+|||++|||++++|+|++.|||++|++||+
T Consensus 205 ~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 205 MALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999985433 57899999999999999999999999999999999999999985
No 14
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1e-43 Score=383.77 Aligned_cols=218 Identities=26% Similarity=0.326 Sum_probs=164.5
Q ss_pred CCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC---CChHHHHHHHHHHhhCCCcEEEEccc
Q 041951 163 RDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG---CDSAGVLGAFDDAIADGVDVITISIG 239 (726)
Q Consensus 163 ~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~A~~~g~dVInlSlG 239 (726)
.|+.+|||||||||+|+... ...+.|+||+|+|+.+|+++... +....+++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 46789999999999998532 12348999999999999986532 23457999999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHH-hhhCCcEEEEccCCCCCCCC----CC-CCCceEEEecccCCceeeeEEEeCCCeeEeeEEe
Q 041951 240 GDSAVDFSEDAISIGAFH-AMAKGVLTLNSAGNSGPGLT----AS-VAPWLMSVAASTTDRLFVDKVALGNGKAISGYSI 313 (726)
Q Consensus 240 ~~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~g~~~~----~~-~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 313 (726)
.....+. ...+...+.+ +.++|+++|+||||+|+... |+ .++++|+|||+.....+...
T Consensus 254 ~~~~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 254 EATHWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred cCCCCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 8732221 1233344444 44789999999999998655 43 57899999986432100000
Q ss_pred ccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeec
Q 041951 314 NSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSL 393 (726)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~ 393 (726)
|.+
T Consensus 319 ---------y~~-------------------------------------------------------------------- 321 (412)
T cd04857 319 ---------YSL-------------------------------------------------------------------- 321 (412)
T ss_pred ---------ccc--------------------------------------------------------------------
Confidence 000
Q ss_pred CEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCC
Q 041951 394 PAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNA 473 (726)
Q Consensus 394 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~ 473 (726)
.....+.++.||||||+.
T Consensus 322 --------------------------------------------------------------~~~~~~~~~~fSSrGP~~ 339 (412)
T cd04857 322 --------------------------------------------------------------REKLPGNQYTWSSRGPTA 339 (412)
T ss_pred --------------------------------------------------------------ccccCCccccccccCCcc
Confidence 001125579999999998
Q ss_pred CCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh----cCCCCCHHHHHHHHH
Q 041951 474 IVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIM 549 (726)
Q Consensus 474 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~ik~~L~ 549 (726)
++.+||||+|||+.|.+.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|+
T Consensus 340 --dG~~~pdI~APG~~I~s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~ 406 (412)
T cd04857 340 --DGALGVSISAPGGAIASVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALE 406 (412)
T ss_pred --cCCcCceEEeCCCcEEEcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHH
Confidence 9999999999999998753221 15689999999999999999999975 568999999999999
Q ss_pred cccccc
Q 041951 550 TTAWAM 555 (726)
Q Consensus 550 ~TA~~~ 555 (726)
+||+++
T Consensus 407 ~TA~~~ 412 (412)
T cd04857 407 NTAKKL 412 (412)
T ss_pred HhCccC
Confidence 999874
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=8.3e-44 Score=372.27 Aligned_cols=244 Identities=32% Similarity=0.445 Sum_probs=194.0
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecC-CCCCCCCCCCcCCcccchhhcccc
Q 041951 101 ESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYT-PAPYDTARDEEGHGSHTASTASGN 179 (726)
Q Consensus 101 G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~-~~~~~~~~D~~gHGThVAGiaag~ 179 (726)
|+||+|||||+|||++||+|.+. |++......... ..++. ......+.|..+|||||||||+|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~~~~~~-------~~~~d~~~~~~~~~d~~~HGT~vagii~g~ 65 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGGSADHD-------YNWFDPVGNTPLPYDDNGHGTHTMGTMVGN 65 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCCCcccc-------cccccCCCCCCCCCCCCCchhhhhhheeec
Confidence 89999999999999999999864 111110000000 00011 111345667889999999999987
Q ss_pred CCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh------------CCCcEEEEcccCCCCCCCc
Q 041951 180 EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA------------DGVDVITISIGGDSAVDFS 247 (726)
Q Consensus 180 ~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~------------~g~dVInlSlG~~~~~~~~ 247 (726)
... +...||||+|+|+.+|++...++...+++++++++++ .+++|||||||.... .
T Consensus 66 ~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~---~ 133 (264)
T cd07481 66 DGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG---D 133 (264)
T ss_pred CCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC---C
Confidence 421 1128999999999999998877888899999999875 789999999998832 3
Q ss_pred ccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCce
Q 041951 248 EDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRR 322 (726)
Q Consensus 248 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (726)
...+..++..+.++|++||+||||++.... |+..|++|+||+.+.+
T Consensus 134 ~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------------- 184 (264)
T cd07481 134 NEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----------------------------- 184 (264)
T ss_pred chHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----------------------------
Confidence 345566667788899999999999986543 6778899999875322
Q ss_pred eeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhh
Q 041951 323 FPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDS 402 (726)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 402 (726)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCc
Q 041951 403 LSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPD 482 (726)
Q Consensus 403 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 482 (726)
+.++.||++||.. .+++|||
T Consensus 185 ----------------------------------------------------------~~~~~~S~~g~~~--~~~~~~d 204 (264)
T cd07481 185 ----------------------------------------------------------DVLADFSSRGPST--YGRIKPD 204 (264)
T ss_pred ----------------------------------------------------------CCCccccCCCCCC--CCCcCce
Confidence 3467899999988 7999999
Q ss_pred eEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCC--CCHHHHHHHHHcccc
Q 041951 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD--WSPSAIKSAIMTTAW 553 (726)
Q Consensus 483 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--ls~~~ik~~L~~TA~ 553 (726)
|+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||.+|++||+
T Consensus 205 v~ApG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 205 ISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EEECCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999999998876 57899999999999999999999999999 999999999999985
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-43 Score=366.67 Aligned_cols=253 Identities=27% Similarity=0.434 Sum_probs=204.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCC--CCCCCCCCCcCCcccchhhccc
Q 041951 101 ESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTP--APYDTARDEEGHGSHTASTASG 178 (726)
Q Consensus 101 G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~--~~~~~~~D~~gHGThVAGiaag 178 (726)
|+||+|+|||+|||++||+|.+.... ...+.. .......|..+|||||||||+|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~~~~~d~~~HGT~vAgiiag 56 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR------------------------FADFVNTVNGRTTPYDDNGHGTHVAGIIAG 56 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc------------------------cccccccccCCCCCCCCCCchHHHHHHHhc
Confidence 89999999999999999999864211 011100 1234566788999999999999
Q ss_pred cCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhC----CCcEEEEcccCCCCCCCcccHHHH
Q 041951 179 NEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIAD----GVDVITISIGGDSAVDFSEDAISI 253 (726)
Q Consensus 179 ~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~----g~dVInlSlG~~~~~~~~~~~~~~ 253 (726)
..... .+...|+||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||.........+.+..
T Consensus 57 ~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~ 129 (264)
T cd07487 57 SGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQ 129 (264)
T ss_pred CCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHH
Confidence 85321 22349999999999999998776 6778899999999998 999999999988544556788888
Q ss_pred HHHHhhhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEcc
Q 041951 254 GAFHAMAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGK 329 (726)
Q Consensus 254 a~~~a~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~ 329 (726)
++.++.++|++||+||||++.... |+..+++|+||+...+..
T Consensus 130 ~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------------------------- 175 (264)
T cd07487 130 AVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------------------------- 175 (264)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------------------------
Confidence 999999999999999999998764 778899999998654310
Q ss_pred CCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHH
Q 041951 330 EISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISY 409 (726)
Q Consensus 330 ~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 409 (726)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCc
Q 041951 410 KESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVD 489 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 489 (726)
....++.||++||+. ++++||||+|||++
T Consensus 176 -------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~ 204 (264)
T cd07487 176 -------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGEN 204 (264)
T ss_pred -------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccc
Confidence 002368899999998 89999999999999
Q ss_pred EEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 490 ILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 490 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
|++..+.... ......+.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 205 i~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 205 IVSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eEeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9997654210 01122367899999999999999999999999999999999999999985
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.3e-42 Score=365.00 Aligned_cols=258 Identities=26% Similarity=0.336 Sum_probs=197.7
Q ss_pred cccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeec---CCCCCCCCCCCcCCc
Q 041951 93 SITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYY---TPAPYDTARDEEGHG 169 (726)
Q Consensus 93 ~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~---~~~~~~~~~D~~gHG 169 (726)
.+|..+++|+||+|||||||||++||+|.+..... +... ....+.+ .++......|..+||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~gHG 64 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-----------GYDP-----AVNGYNFVPNVGDIDNDVSVGGGHG 64 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-----------Cccc-----ccCCcccccccCCcCCCCCCCCCCH
Confidence 47999999999999999999999999999651110 0000 0001111 111123456788999
Q ss_pred ccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcc
Q 041951 170 SHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSE 248 (726)
Q Consensus 170 ThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~ 248 (726)
|||||||+|+.......-|+ ..+.|+||+|+|+.+|++...+ .....+++||++|++.|++|||||||... ...+.
T Consensus 65 T~VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~-~~~~~ 141 (273)
T cd07485 65 THVAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG-GGIYS 141 (273)
T ss_pred HHHHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-ccccC
Confidence 99999999875322111111 1236799999999999998755 77788999999999999999999999883 23344
Q ss_pred cHHHHHHHHhhhC-------CcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCC
Q 041951 249 DAISIGAFHAMAK-------GVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMK 319 (726)
Q Consensus 249 ~~~~~a~~~a~~~-------Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 319 (726)
..+..++..+.++ |+++|+||||++.... |+..|++|+||+++.+
T Consensus 142 ~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~-------------------------- 195 (273)
T cd07485 142 PLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN-------------------------- 195 (273)
T ss_pred HHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC--------------------------
Confidence 5666777777777 9999999999998766 7888999999985422
Q ss_pred CceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEee
Q 041951 320 GRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVS 399 (726)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~ 399 (726)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCc
Q 041951 400 QDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEIL 479 (726)
Q Consensus 400 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 479 (726)
+.++.||++|+..
T Consensus 196 -------------------------------------------------------------~~~~~~S~~g~~~------ 208 (273)
T cd07485 196 -------------------------------------------------------------DNKASFSNYGRWV------ 208 (273)
T ss_pred -------------------------------------------------------------CCcCccccCCCce------
Confidence 3457899999977
Q ss_pred cCceEeCCC-cEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCC-CCHHHHHHHHHcc
Q 041951 480 KPDISAPGV-DILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD-WSPSAIKSAIMTT 551 (726)
Q Consensus 480 KPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-ls~~~ik~~L~~T 551 (726)
||+|||. .|+++.+.... ...+.|..++|||||||+|||++|||+|++|+ |+++|||++|++|
T Consensus 209 --~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 --DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred --EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 88887764311 11257899999999999999999999999999 9999999999986
No 18
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-42 Score=366.89 Aligned_cols=160 Identities=24% Similarity=0.357 Sum_probs=124.5
Q ss_pred cccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCC
Q 041951 86 DFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165 (726)
Q Consensus 86 ~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~ 165 (726)
+.++++ .+|+++++|+||+||||||||+..|| |...++.. ...+.........|.
T Consensus 6 ~~l~~~-~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~~-----------------------~~~~~~~~~~~~~D~ 60 (298)
T cd07494 6 ALLNAT-RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQV-----------------------RVVLAPGATDPACDE 60 (298)
T ss_pred hhcChh-HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCccc-----------------------eeecCCCCCCCCCCC
Confidence 346677 89999999999999999999999998 76432210 001111112345678
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCCCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVD 245 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~ 245 (726)
.|||||||+++ .||||+|+|+.+|++++ ...++++||+||++++++|||||||......
T Consensus 61 ~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~ 119 (298)
T cd07494 61 NGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDLRSP 119 (298)
T ss_pred CCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCCCCc
Confidence 89999999875 68899999999999854 4567899999999999999999999863211
Q ss_pred C---------cccHHHHHHHHhhhCCcEEEEccCCCCCCCCCCCCCceEEEecccC
Q 041951 246 F---------SEDAISIGAFHAMAKGVLTLNSAGNSGPGLTASVAPWLMSVAASTT 292 (726)
Q Consensus 246 ~---------~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~p~vitVga~~~ 292 (726)
. ....+..++..|.++|++||+||||++... |+..|++|+||+++.
T Consensus 120 ~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~~~-Pa~~p~viaVga~~~ 174 (298)
T cd07494 120 GTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGWSF-PAQHPEVIAAGGVFV 174 (298)
T ss_pred ccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCCCc-CCCCCCEEEEEeEec
Confidence 1 234577788888999999999999998643 999999999999754
No 19
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.5e-43 Score=369.83 Aligned_cols=262 Identities=24% Similarity=0.256 Sum_probs=186.7
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCC
Q 041951 104 LIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKD 183 (726)
Q Consensus 104 VvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~ 183 (726)
.+|||||||||..||+|... +.....+... .....|..||||||||||++....
T Consensus 1 p~VaviDtGi~~~hp~l~~~------------------------~~~~~~~~~~-~~~~~d~~gHGT~vAgiia~~~~~- 54 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPA------------------------LAEDDLDSDE-PGWTADDLGHGTAVAGLALYGDLT- 54 (291)
T ss_pred CEEEEecCCCCCCChhhhhh------------------------hccccccccC-CCCcCCCCCChHHHHHHHHcCccc-
Confidence 37999999999999999843 1111112111 011568999999999999876421
Q ss_pred CccccccccceeeecCCcEEEEEEeeCCCC-----CChHHHHHHHHHHhhCC---CcEEEEcccCCCCCCCc-ccHHHHH
Q 041951 184 ASFYGVGQGTARGGVPSGRIAAYKVCFPGG-----CDSAGVLGAFDDAIADG---VDVITISIGGDSAVDFS-EDAISIG 254 (726)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-----~~~~~i~~ai~~A~~~g---~dVInlSlG~~~~~~~~-~~~~~~a 254 (726)
.....|+||+|+|+.+|++...| ....++++||+||++.+ ++|||||||........ ...+..+
T Consensus 55 -------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~ 127 (291)
T cd04847 55 -------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAA 127 (291)
T ss_pred -------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHH
Confidence 11238999999999999998863 45678999999999753 59999999998422211 1245555
Q ss_pred HHH-hhhCCcEEEEccCCCCCCCC--------------CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCC
Q 041951 255 AFH-AMAKGVLTLNSAGNSGPGLT--------------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMK 319 (726)
Q Consensus 255 ~~~-a~~~Gv~vV~AAGN~g~~~~--------------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 319 (726)
+++ +.++|++||+||||++.... |+.++++|+|||++.+.........
T Consensus 128 id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~----------------- 190 (291)
T cd04847 128 LDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY----------------- 190 (291)
T ss_pred HHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc-----------------
Confidence 554 55899999999999998754 3556799999987654210000000
Q ss_pred CceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEee
Q 041951 320 GRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVS 399 (726)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~ 399 (726)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCc
Q 041951 400 QDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEIL 479 (726)
Q Consensus 400 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 479 (726)
+.......+.||+|||.. ++.+
T Consensus 191 --------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~ 212 (291)
T cd04847 191 --------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPI 212 (291)
T ss_pred --------------------------------------------------------cccccccCCCccccCCCC--CCCc
Confidence 000001233499999998 9999
Q ss_pred cCceEeCCCcEEeecCCCccCC-----cCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 480 KPDISAPGVDILAAFSPLAQAS-----IDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 480 KPDI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
||||+|||++|.+......... ..........|..++|||||||||||++|||++++|++++++||++|++||+
T Consensus 213 KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 213 KPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999988654211000 0000112367999999999999999999999999999999999999999985
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=3.5e-42 Score=358.29 Aligned_cols=230 Identities=33% Similarity=0.461 Sum_probs=195.0
Q ss_pred ccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccch
Q 041951 94 ITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTA 173 (726)
Q Consensus 94 ~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVA 173 (726)
.|..+++|+||+|||||+||+++||+|.+. +...+.+..+ ....|..+||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~------------------------~~~~~~~~~~--~~~~d~~~HGT~vA 70 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR------------------------AIWGADFVGG--DPDSDCNGHGTHVA 70 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC------------------------eeeeeecCCC--CCCCCCCccHHHHH
Confidence 777889999999999999999999999853 2223333221 22567889999999
Q ss_pred hhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhC-----CCcEEEEcccCCCCCCCc
Q 041951 174 STASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIAD-----GVDVITISIGGDSAVDFS 247 (726)
Q Consensus 174 Giaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~-----g~dVInlSlG~~~~~~~~ 247 (726)
|||+|+. .||||+|+|+.+|+++..+ ...+.++++++++++. +++|||||||...
T Consensus 71 giia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----- 131 (255)
T cd04077 71 GTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----- 131 (255)
T ss_pred HHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC-----
Confidence 9999863 6899999999999998875 6778899999999987 4899999999882
Q ss_pred ccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceee
Q 041951 248 EDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFP 324 (726)
Q Consensus 248 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 324 (726)
...+..++.++.++|+++|+||||+|.... |+..|++|+||+.+.+
T Consensus 132 ~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------------------- 180 (255)
T cd04077 132 STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------------------- 180 (255)
T ss_pred CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------------------------------
Confidence 456677778889999999999999998764 8889999999986432
Q ss_pred EEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHH
Q 041951 325 LVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLS 404 (726)
Q Consensus 325 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~ 404 (726)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceE
Q 041951 405 SLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDIS 484 (726)
Q Consensus 405 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 484 (726)
+.++.||++||.. ||+
T Consensus 181 --------------------------------------------------------~~~~~~S~~g~~~--------~i~ 196 (255)
T cd04077 181 --------------------------------------------------------DARASFSNYGSCV--------DIF 196 (255)
T ss_pred --------------------------------------------------------CCccCcccCCCCC--------cEE
Confidence 2357899999987 999
Q ss_pred eCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccc
Q 041951 485 APGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWA 554 (726)
Q Consensus 485 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~ 554 (726)
|||.+|.++.... .+.|..++|||||||+|||++|||++++|++++++||++|++||++
T Consensus 197 apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 197 APGVDILSAWIGS-----------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred eCCCCeEecccCC-----------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 9999999877642 1679999999999999999999999999999999999999999975
No 21
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-43 Score=361.73 Aligned_cols=319 Identities=24% Similarity=0.320 Sum_probs=253.4
Q ss_pred cEEEEEeCCCCCCCCcchhhHHHHHHHHhcC-------CCCcc------------ceEEEec---cceeEEEEEeCHHHH
Q 041951 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVG-------RSVED------------ILVRSYR---RSFNGFAAKLTVDER 59 (726)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~------------~i~~~y~---~~~~g~s~~l~~~~~ 59 (726)
..|||.++.... ++..+.|.++++..+.. +..-. .|.+.|. .+|+|..-..+.+-+
T Consensus 81 ~~YiV~f~~~~~--q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v 158 (501)
T KOG1153|consen 81 SRYIVVFKPDAS--QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESV 158 (501)
T ss_pred cceEEEeCCCcc--HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccccee
Confidence 479999994444 67778899999888761 11111 1444454 378888888999999
Q ss_pred HHHHcCCCeEEEEeceeeccc--------ccCCccccCCCc------cccc----cCCCCCCcEEEEEeccCCCCCCCCC
Q 041951 60 QKLASMEKVVSVFPSRTLQLH--------TTRSWDFMGLNL------SITR----KRSVESNLIVGVIDTGIWPESESFS 121 (726)
Q Consensus 60 ~~L~~~p~V~~v~~~~~~~~~--------~~~s~~~~g~~~------~~~~----~~~~G~GVvVaVIDtGid~~Hp~f~ 121 (726)
..+++.|-+..++++...... ..-+|.+..+.. .-|. .-..|+||...|+||||+.+||+|.
T Consensus 159 ~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFe 238 (501)
T KOG1153|consen 159 CSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFE 238 (501)
T ss_pred eeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccc
Confidence 999999999999887665533 233444433321 1121 2337999999999999999999999
Q ss_pred CCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCc
Q 041951 122 DEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSG 201 (726)
Q Consensus 122 d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A 201 (726)
++ ++|-. ..... ....|++||||||||+|+++. .|||.++
T Consensus 239 gR------a~wGa-----------------~i~~~---~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s 278 (501)
T KOG1153|consen 239 GR------AIWGA-----------------TIPPK---DGDEDCNGHGTHVAGLIGSKT--------------FGVAKNS 278 (501)
T ss_pred cc------eeccc-----------------ccCCC---CcccccCCCcceeeeeeeccc--------------ccccccc
Confidence 65 33411 11101 245689999999999999885 7889999
Q ss_pred EEEEEEeeCCCC-CChHHHHHHHHHHhhC---------CCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCC
Q 041951 202 RIAAYKVCFPGG-CDSAGVLGAFDDAIAD---------GVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGN 271 (726)
Q Consensus 202 ~L~~~kv~~~~g-~~~~~i~~ai~~A~~~---------g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN 271 (726)
+|+++||+.++| +..+++++++|++++. +..|.|||+|+. ..-++..|+++|.+.|+.+++||||
T Consensus 279 ~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~fa~AAGN 353 (501)
T KOG1153|consen 279 NLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-----RSAALNMAVNAASERGIHFAVAAGN 353 (501)
T ss_pred ceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeEEEEcCCC
Confidence 999999999998 8999999999999875 578999999999 3356788889999999999999999
Q ss_pred CCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCC
Q 041951 272 SGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCV 348 (726)
Q Consensus 272 ~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~ 348 (726)
+..+.+ |+.+..+|||||++..
T Consensus 354 e~eDAC~~SPass~~aITVGAst~~------------------------------------------------------- 378 (501)
T KOG1153|consen 354 EHEDACNSSPASSKKAITVGASTKN------------------------------------------------------- 378 (501)
T ss_pred cchhhhccCcccccccEEecccccc-------------------------------------------------------
Confidence 999888 8999999999997532
Q ss_pred CCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhcee
Q 041951 349 NGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHF 428 (726)
Q Consensus 349 ~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 428 (726)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCC
Q 041951 429 IFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKR 508 (726)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~ 508 (726)
+.+|.||+||++. ||-|||.+|+|+|.++.
T Consensus 379 --------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~---------- 408 (501)
T KOG1153|consen 379 --------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN---------- 408 (501)
T ss_pred --------------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCc----------
Confidence 4689999999999 99999999999998753
Q ss_pred CCcceeeccccchhHHHHHHHHHHHhcCCC---------CCHHHHHHHHHcccc
Q 041951 509 KPKYNIISGTSMSCPHAAGVAAYVKSFHPD---------WSPSAIKSAIMTTAW 553 (726)
Q Consensus 509 ~~~y~~~sGTSmAaP~VAG~aALl~q~~P~---------ls~~~ik~~L~~TA~ 553 (726)
+.-...||||||+|||||++|..+..+|. .|+.++|..++.-..
T Consensus 409 -~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 409 -NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred -cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 56789999999999999999999998873 388888888776554
No 22
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=5.2e-42 Score=358.08 Aligned_cols=244 Identities=31% Similarity=0.405 Sum_probs=202.1
Q ss_pred cccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCC
Q 041951 86 DFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165 (726)
Q Consensus 86 ~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~ 165 (726)
+.++++ .+|..+ +|+||+|||||+||+++||+|... ++...+++... ...+.|.
T Consensus 14 ~~~~~~-~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-----------------------~~~~~~~~~~~-~~~~~d~ 67 (260)
T cd07484 14 DQIGAP-KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-----------------------KFVLGYDFVDN-DSDAMDD 67 (260)
T ss_pred cccChH-HHHhhc-CCCCCEEEEEeCCCCCCCcccccC-----------------------CcccceeccCC-CCCCCCC
Confidence 445666 899988 999999999999999999998532 22333333221 1336678
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAV 244 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~ 244 (726)
.+|||||||||++.... ..| +.|+||+|+|+.+|+++..+ +...++++||+++++.+++|||||||...
T Consensus 68 ~~HGT~vagii~~~~~~---~~~-----~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~-- 137 (260)
T cd07484 68 NGHGTHVAGIIAAATNN---GTG-----VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL-- 137 (260)
T ss_pred CCcHHHHHHHHhCccCC---CCc-----eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC--
Confidence 89999999999987421 223 38999999999999998765 77888999999999999999999999883
Q ss_pred CCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCce
Q 041951 245 DFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRR 322 (726)
Q Consensus 245 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (726)
....+..++..+.++|++||+||||+|.... |+..+++|+||+.+.+
T Consensus 138 --~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~----------------------------- 186 (260)
T cd07484 138 --GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD----------------------------- 186 (260)
T ss_pred --CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-----------------------------
Confidence 3456677777888999999999999998754 8999999999985422
Q ss_pred eeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhh
Q 041951 323 FPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDS 402 (726)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 402 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCc
Q 041951 403 LSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPD 482 (726)
Q Consensus 403 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 482 (726)
+..+.||++|+.. |
T Consensus 187 ----------------------------------------------------------~~~~~~s~~g~~~--------~ 200 (260)
T cd07484 187 ----------------------------------------------------------DKRASFSNYGKWV--------D 200 (260)
T ss_pred ----------------------------------------------------------CCcCCcCCCCCCc--------e
Confidence 2356889999876 9
Q ss_pred eEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccC
Q 041951 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMN 556 (726)
Q Consensus 483 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~ 556 (726)
++|||.+|++..+. +.|..++|||||||+|||++|||++++| |++.+||++|++||+++.
T Consensus 201 ~~apG~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~g 260 (260)
T cd07484 201 VSAPGGGILSTTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDIG 260 (260)
T ss_pred EEeCCCCcEeecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccCc
Confidence 99999999988765 5789999999999999999999999999 999999999999998863
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.1e-42 Score=355.01 Aligned_cols=248 Identities=30% Similarity=0.416 Sum_probs=186.1
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCC---CCCCCCCCCcCCcccchhhcccc
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTP---APYDTARDEEGHGSHTASTASGN 179 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~---~~~~~~~D~~gHGThVAGiaag~ 179 (726)
||+|||||+|||++||+|.+. +.....|.. +......|..+|||||||||+|+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~ 56 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR------------------------VAQWADFDENRRISATEVFDAGGHGTHVSGTIGGG 56 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc------------------------cCCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcC
Confidence 799999999999999999853 111112211 11234567889999999999998
Q ss_pred CCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhh
Q 041951 180 EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAM 259 (726)
Q Consensus 180 ~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~ 259 (726)
.. ++...|+||+|+|+.+|++...++...++++||+||++.+++|||||||..... .+.+..+++.+.
T Consensus 57 ~~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~~ 124 (254)
T cd07490 57 GA---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEALS 124 (254)
T ss_pred CC---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHHH
Confidence 53 223489999999999999987767888999999999999999999999988322 556665555555
Q ss_pred h-CCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCccccc
Q 041951 260 A-KGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQ 336 (726)
Q Consensus 260 ~-~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (726)
+ +|++||+||||+|.... |+..+++|+||+++.+.........
T Consensus 125 ~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~---------------------------------- 170 (254)
T cd07490 125 NQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF---------------------------------- 170 (254)
T ss_pred HcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC----------------------------------
Confidence 4 69999999999988755 8889999999997543210000000
Q ss_pred ccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchh
Q 041951 337 ELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYI 416 (726)
Q Consensus 337 ~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 416 (726)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCC
Q 041951 417 FYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSP 496 (726)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 496 (726)
........+.+|.. .....||||+|||.+|+++...
T Consensus 171 -------------------------------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~ 206 (254)
T cd07490 171 -------------------------------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQG 206 (254)
T ss_pred -------------------------------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccC
Confidence 00012222333332 2556899999999999986522
Q ss_pred CccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 497 LAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
. ...+.|..++|||||||+|||++|||++++|+|++.+||++|++||+
T Consensus 207 ~---------~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 207 A---------NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred C---------CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1 11267999999999999999999999999999999999999999984
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.7e-41 Score=359.01 Aligned_cols=275 Identities=26% Similarity=0.333 Sum_probs=200.7
Q ss_pred cCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhc
Q 041951 97 KRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTA 176 (726)
Q Consensus 97 ~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGia 176 (726)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+..+ ..|..+|||||||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~-~~~~~~~~~~~~~~~----~~d~~~HGT~vAgii 64 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN-LFHRKIVRYDSLSDT----KDDVDGHGTHVAGII 64 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc-cCcccEEEeeccCCC----CCCCCCCcchhheee
Confidence 58899999999999999999999986421 0111 123455544444222 227899999999999
Q ss_pred cccCCCCCccccccccceeeecCCcEEEEEEeeCCCC--CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHH
Q 041951 177 SGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG--CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIG 254 (726)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a 254 (726)
+|......... .+.|+||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||..... .......+
T Consensus 65 a~~~~~~~~~~-----~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~~~~~~~~ 137 (293)
T cd04842 65 AGKGNDSSSIS-----LYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--GYTLLARA 137 (293)
T ss_pred ccCCcCCCccc-----ccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--ccchHHHH
Confidence 99864322111 239999999999999988765 5666789999999999999999999998321 12333344
Q ss_pred HHHhh-h-CCcEEEEccCCCCCCCC-----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEE
Q 041951 255 AFHAM-A-KGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVY 327 (726)
Q Consensus 255 ~~~a~-~-~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~ 327 (726)
++++. + +|+++|+||||++.... |+.++++|+|||++......
T Consensus 138 ~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~------------------------------ 187 (293)
T cd04842 138 YDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN------------------------------ 187 (293)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc------------------------------
Confidence 44433 3 79999999999987642 88889999999976542100
Q ss_pred ccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHH
Q 041951 328 GKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLI 407 (726)
Q Consensus 328 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 407 (726)
...|..
T Consensus 188 ------------~~~~~~-------------------------------------------------------------- 193 (293)
T cd04842 188 ------------GEGGLG-------------------------------------------------------------- 193 (293)
T ss_pred ------------cccccc--------------------------------------------------------------
Confidence 000000
Q ss_pred HHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCC
Q 041951 408 SYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPG 487 (726)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 487 (726)
.......++.||++||+. ++++||||+|||
T Consensus 194 ------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG 223 (293)
T cd04842 194 ------------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPG 223 (293)
T ss_pred ------------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCC
Confidence 001125689999999998 899999999999
Q ss_pred CcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcC-----C---CCCHHHHHHHHHcccc
Q 041951 488 VDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH-----P---DWSPSAIKSAIMTTAW 553 (726)
Q Consensus 488 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~ls~~~ik~~L~~TA~ 553 (726)
++|+++..... .........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 224 ~~i~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 224 TGILSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCeEeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999875420 0011123678999999999999999999999985 4 6677899999999985
No 25
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-41 Score=357.16 Aligned_cols=256 Identities=25% Similarity=0.330 Sum_probs=189.6
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCcccccccc-----CCCc---------ccCCceeEeeeecCCCCCCCCCCCcCC
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACN-----GGKN---------FTCNNKIIGARYYTPAPYDTARDEEGH 168 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~-----~g~~---------f~~n~k~ig~~~~~~~~~~~~~D~~gH 168 (726)
||+|||||||||++||+|.+.-.. .|+-..+ .+.. .+.+.+.. ....+......+..+|
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~----g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~H 73 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLP----GYDFISDPAIANDGDGRDSDPTDPGDWVTGDDV---PPGGFCGSGVSPSSWH 73 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcccc----CcccccCcccccCCCCCCCCCCCcccccccccc---cccccccCCCCCCCCC
Confidence 799999999999999999864210 0100000 0000 00000000 0001112344567899
Q ss_pred cccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHh----------hCCCcEEEEcc
Q 041951 169 GSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAI----------ADGVDVITISI 238 (726)
Q Consensus 169 GThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~----------~~g~dVInlSl 238 (726)
||||||||+|... +..|+ .||||+|+|+.+|+++..+.+.+++++|++||+ .++++||||||
T Consensus 74 GT~vAgiiaa~~~---~~~~~-----~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~ 145 (285)
T cd07496 74 GTHVAGTIAAVTN---NGVGV-----AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSL 145 (285)
T ss_pred HHHHHHHHhCcCC---CCCCc-----eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCC
Confidence 9999999999853 23344 899999999999999877778889999999998 45789999999
Q ss_pred cCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEecc
Q 041951 239 GGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINS 315 (726)
Q Consensus 239 G~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 315 (726)
|.... ....+..++..+.++|++||+||||++.... |+..+++|+||+++.+
T Consensus 146 G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------------- 200 (285)
T cd07496 146 GGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR---------------------- 200 (285)
T ss_pred CCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC----------------------
Confidence 98832 1456777888899999999999999998862 8889999999985422
Q ss_pred CCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCE
Q 041951 316 FAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPA 395 (726)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~ 395 (726)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCC
Q 041951 396 VAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIV 475 (726)
Q Consensus 396 ~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~ 475 (726)
+.++.||++|+..
T Consensus 201 -----------------------------------------------------------------~~~~~~S~~g~~v-- 213 (285)
T cd07496 201 -----------------------------------------------------------------GQRASYSNYGPAV-- 213 (285)
T ss_pred -----------------------------------------------------------------CCcccccCCCCCC--
Confidence 3467899999987
Q ss_pred CCCccCceEeCCCcEEeecCCCccCC--cCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 041951 476 PEILKPDISAPGVDILAAFSPLAQAS--IDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 551 (726)
Q Consensus 476 ~~~~KPDI~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~T 551 (726)
||.|||++|.+......... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 214 ------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 214 ------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999998776432110 00011223578999999999999999999999999999999999999976
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-41 Score=348.21 Aligned_cols=238 Identities=28% Similarity=0.409 Sum_probs=189.4
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCC
Q 041951 104 LIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKD 183 (726)
Q Consensus 104 VvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~ 183 (726)
|+|||||+|||++||+|.+.. +++..+.+..+ .....|..+|||||||||+|+..
T Consensus 1 V~VaviDsGi~~~hp~l~~~~----------------------~~~~~~~~~~~-~~~~~~~~~HGT~vAgiiag~~~-- 55 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP----------------------KLVPGWNFVSN-NDPTSDIDGHGTACAGVAAAVGN-- 55 (242)
T ss_pred CEEEEecCCCCCCChhhccCc----------------------CccCCccccCC-CCCCCCCCCCHHHHHHHHHhccC--
Confidence 789999999999999998530 11111222111 12456789999999999999852
Q ss_pred CccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhh-C
Q 041951 184 ASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMA-K 261 (726)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~-~ 261 (726)
+..| +.|+||+|+|+.+|++...+ +...++.+++++|++.+++|||||||...........+..++..+.+ +
T Consensus 56 -~~~~-----~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~ 129 (242)
T cd07498 56 -NGLG-----VAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGK 129 (242)
T ss_pred -CCce-----eEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcC
Confidence 1223 38999999999999997765 67888999999999999999999999874444456677777778888 9
Q ss_pred CcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccC
Q 041951 262 GVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELS 339 (726)
Q Consensus 262 Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (726)
|+++|+||||+|.... |+..+++|+||+++..
T Consensus 130 gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------------------------------- 163 (242)
T cd07498 130 GGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------------------------------- 163 (242)
T ss_pred CeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------------------------------
Confidence 9999999999998876 8889999999986422
Q ss_pred CCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhh
Q 041951 340 SQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYI 419 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 419 (726)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCcc
Q 041951 420 LRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQ 499 (726)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 499 (726)
+.++.||++||.. |++|||.++.........
T Consensus 164 -----------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~ 194 (242)
T cd07498 164 -----------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS 194 (242)
T ss_pred -----------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc
Confidence 3357899999987 999999999887543211
Q ss_pred CCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 041951 500 ASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 551 (726)
Q Consensus 500 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~T 551 (726)
......+.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 195 ----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 195 ----AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ----cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 011223678999999999999999999999999999999999999976
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.7e-41 Score=357.33 Aligned_cols=146 Identities=28% Similarity=0.403 Sum_probs=109.0
Q ss_pred ccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhh
Q 041951 96 RKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTAST 175 (726)
Q Consensus 96 ~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGi 175 (726)
..+++|+||+|||||+|||.+||+|.+.. +....|.+. ....|..+||||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~------------------------~~~~~~~~~--~~~~d~~gHGT~VAgi 55 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD------------------------ITTKSFVGG--EDVQDGHGHGTHCAGT 55 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc------------------------ccCcccCCC--CCCCCCCCcHHHHHHH
Confidence 45789999999999999999999998541 112223221 2356789999999999
Q ss_pred ccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCC---------CC
Q 041951 176 ASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSA---------VD 245 (726)
Q Consensus 176 aag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~---------~~ 245 (726)
|+|+... +...||||+|+|+.+|++...+ .....+++||+||++.|++|||||||.... ..
T Consensus 56 iag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~ 126 (297)
T cd07480 56 IFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGL 126 (297)
T ss_pred HhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCc
Confidence 9987532 2237999999999999987654 667779999999999999999999998631 01
Q ss_pred CcccHHHHHHHHh---------------hhCCcEEEEccCCCCCCC
Q 041951 246 FSEDAISIGAFHA---------------MAKGVLTLNSAGNSGPGL 276 (726)
Q Consensus 246 ~~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~g~~~ 276 (726)
.....++.....+ .++|++||+||||++...
T Consensus 127 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 127 AFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 1122233222233 678999999999998654
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-40 Score=349.20 Aligned_cols=245 Identities=19% Similarity=0.179 Sum_probs=177.8
Q ss_pred CCCccccccC-CCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcC
Q 041951 89 GLNLSITRKR-SVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167 (726)
Q Consensus 89 g~~~~~~~~~-~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~g 167 (726)
+++ ++|+.. ..|+||+|+|||+|||.+||+|.++.... ..+ ..+.|..+
T Consensus 3 ~~~-~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~--------------------------~~~---~~~~d~~g 52 (277)
T cd04843 3 NAR-YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL--------------------------ISG---LTDQADSD 52 (277)
T ss_pred ChH-HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc--------------------------cCC---CCCCCCCC
Confidence 455 789874 45999999999999999999998541100 000 12567889
Q ss_pred CcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh----CCCcEEEEcccCCCC
Q 041951 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA----DGVDVITISIGGDSA 243 (726)
Q Consensus 168 HGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~----~g~dVInlSlG~~~~ 243 (726)
|||||||||+|.. +.+|. .||||+|+|+.+|++. .++++++|.+|++ .++.+||||||....
T Consensus 53 HGT~VAGiIaa~~----n~~G~-----~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~ 118 (277)
T cd04843 53 HGTAVLGIIVAKD----NGIGV-----TGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTGGPNN 118 (277)
T ss_pred Ccchhheeeeeec----CCCce-----eeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEccccCCCc
Confidence 9999999999873 33444 8999999999999975 3456666666666 456789999998732
Q ss_pred CC-----CcccHHHHHHHHhhhCCcEEEEccCCCCCCCC-CC--------------CCCceEEEecccCCceeeeEEEeC
Q 041951 244 VD-----FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-AS--------------VAPWLMSVAASTTDRLFVDKVALG 303 (726)
Q Consensus 244 ~~-----~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~--------------~~p~vitVga~~~~~~~~~~~~~~ 303 (726)
.. .....+..++.++.++|+++|+||||++.... +. ..|++|+|||++.+.
T Consensus 119 ~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~--------- 189 (277)
T cd04843 119 GYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT--------- 189 (277)
T ss_pred CcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC---------
Confidence 11 12344556777888999999999999987642 11 123566666543210
Q ss_pred CCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccC
Q 041951 304 NGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNE 383 (726)
Q Consensus 304 ~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~ 383 (726)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCee
Q 041951 384 FDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVV 463 (726)
Q Consensus 384 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 463 (726)
...+
T Consensus 190 ----------------------------------------------------------------------------~~~~ 193 (277)
T cd04843 190 ----------------------------------------------------------------------------GHTR 193 (277)
T ss_pred ----------------------------------------------------------------------------CCcc
Confidence 0126
Q ss_pred ecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh----c-CCC
Q 041951 464 VGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS----F-HPD 538 (726)
Q Consensus 464 a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~ 538 (726)
+.||++||.. ||.|||++|+++....... ..+.....|..++|||||||||||++|||++ + +|+
T Consensus 194 ~~fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~ 262 (277)
T cd04843 194 LAFSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTP 262 (277)
T ss_pred ccccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 8899999987 9999999999988653211 0011113457899999999999999999974 3 499
Q ss_pred CCHHHHHHHHHcccc
Q 041951 539 WSPSAIKSAIMTTAW 553 (726)
Q Consensus 539 ls~~~ik~~L~~TA~ 553 (726)
|+++|||++|+.|++
T Consensus 263 lt~~~v~~~L~~t~~ 277 (277)
T cd04843 263 LTPIEMRELLTATGT 277 (277)
T ss_pred CCHHHHHHHHHhcCC
Confidence 999999999999974
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.4e-40 Score=343.40 Aligned_cols=249 Identities=29% Similarity=0.437 Sum_probs=189.1
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCC-CCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccC
Q 041951 102 SNLIVGVIDTGIWPESESFSDEGFG-PAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNE 180 (726)
Q Consensus 102 ~GVvVaVIDtGid~~Hp~f~d~g~~-~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~ 180 (726)
+||+|||||||||++||+|.+.-.. .....+.+....+..+. ++. ..+.+. ++..++.|..+|||||||||+|..
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~-~~~~~~~d~~~HGT~va~ii~~~~ 77 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV--DDI-YGWNFV-NNDNDPMDDNGHGTHVAGIIGAVG 77 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc--cCC-Cccccc-CCCCCCCCCCCcHHHHHHHHHCcC
Confidence 6899999999999999999964210 00001111111111111 111 111111 123556788999999999999885
Q ss_pred CCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhh
Q 041951 181 VKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAM 259 (726)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~ 259 (726)
..+ .+ +.|+||+|+|+.+|++...+ ++..++++++++|++.+++|||+|||.... ...+..++.++.
T Consensus 78 ~~~---~~-----~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~~~~~~~ 145 (259)
T cd07473 78 NNG---IG-----IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRDAIARAI 145 (259)
T ss_pred CCC---Cc-----eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHHHHHHHH
Confidence 321 12 38999999999999998876 788899999999999999999999998832 466777788888
Q ss_pred hCCcEEEEccCCCCCCCC-----CC--CCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCc
Q 041951 260 AKGVLTLNSAGNSGPGLT-----AS--VAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEIS 332 (726)
Q Consensus 260 ~~Gv~vV~AAGN~g~~~~-----~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~ 332 (726)
++|+++|+||||+|.... |. ..+++|+||+.+.+
T Consensus 146 ~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~--------------------------------------- 186 (259)
T cd07473 146 DAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN--------------------------------------- 186 (259)
T ss_pred hCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC---------------------------------------
Confidence 999999999999987632 33 34678888875321
Q ss_pred ccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhc
Q 041951 333 ESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKES 412 (726)
Q Consensus 333 ~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 412 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEe
Q 041951 413 TKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILA 492 (726)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 492 (726)
+.++.||++||. +||+.|||.++++
T Consensus 187 ------------------------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~ 211 (259)
T cd07473 187 ------------------------------------------------DALASFSNYGKK-------TVDLAAPGVDILS 211 (259)
T ss_pred ------------------------------------------------CCcCcccCCCCC-------CcEEEeccCCeEe
Confidence 335668999985 4699999999998
Q ss_pred ecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 493 AFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 493 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
.... +.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 212 ~~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 212 TSPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ccCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 6554 67999999999999999999999999999999999999999985
No 30
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=3.6e-41 Score=355.83 Aligned_cols=271 Identities=33% Similarity=0.493 Sum_probs=208.8
Q ss_pred EEEEEeccCCCCCCCCC-CCCCCCCCccccccccCCCcccCCceeEeeeecCCC--CCCCCCCCcCCcccchhhccccCC
Q 041951 105 IVGVIDTGIWPESESFS-DEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA--PYDTARDEEGHGSHTASTASGNEV 181 (726)
Q Consensus 105 vVaVIDtGid~~Hp~f~-d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~--~~~~~~D~~gHGThVAGiaag~~~ 181 (726)
+|||||+|||++||+|. .. + ...++.+.+.+.++ ......|..+|||||||||+|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~- 60 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F------------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG- 60 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E------------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-
T ss_pred CEEEEcCCcCCCChhHccCC-c------------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-
Confidence 69999999999999998 32 1 01234445566433 24556778999999999999986
Q ss_pred CCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHh-hCCCcEEEEcccCCC--CCCCcccHHHHHHHHh
Q 041951 182 KDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAI-ADGVDVITISIGGDS--AVDFSEDAISIGAFHA 258 (726)
Q Consensus 182 ~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~-~~g~dVInlSlG~~~--~~~~~~~~~~~a~~~a 258 (726)
. .+..+. .|+||+|+|+.+|++...+....++++++++++ +.+++|||+|||... ........+..++..+
T Consensus 61 ~-~~~~~~-----~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~ 134 (282)
T PF00082_consen 61 G-NNGPGI-----NGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYA 134 (282)
T ss_dssp S-SSSSSE-----TCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHH
T ss_pred c-cccccc-----ccccccccccccccccccccccccccchhhhhhhccCCccccccccccccccccccccccccccccc
Confidence 2 232233 899999999999998776677788999999999 899999999999831 1222334456666678
Q ss_pred hhCCcEEEEccCCCCCCCC-----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcc
Q 041951 259 MAKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISE 333 (726)
Q Consensus 259 ~~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 333 (726)
.++|+++|+||||++.... |+..+++|+||++...
T Consensus 135 ~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------------------------- 174 (282)
T PF00082_consen 135 EKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------------------------- 174 (282)
T ss_dssp HHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT----------------------------------------
T ss_pred cccCcceeeccccccccccccccccccccccccccccccc----------------------------------------
Confidence 8999999999999887653 6667888888875321
Q ss_pred cccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcC
Q 041951 334 SCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKEST 413 (726)
Q Consensus 334 ~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 413 (726)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEee
Q 041951 414 KYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAA 493 (726)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa 493 (726)
+.++.||++|+.. .++++||||+|||.++++.
T Consensus 175 -----------------------------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~ 206 (282)
T PF00082_consen 175 -----------------------------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSA 206 (282)
T ss_dssp -----------------------------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEE
T ss_pred -----------------------------------------------ccccccccccccc-ccccccccccccccccccc
Confidence 2357889996543 2789999999999999888
Q ss_pred cCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCCCCC
Q 041951 494 FSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573 (726)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in 573 (726)
++... ...|..++|||||||+|||++|||++++|++++.+||.+|++||+++........+..||||+||
T Consensus 207 ~~~~~----------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in 276 (282)
T PF00082_consen 207 VPGSD----------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLIN 276 (282)
T ss_dssp ETTTE----------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-
T ss_pred ccccc----------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhC
Confidence 86531 03478899999999999999999999999999999999999999999832211236688999999
Q ss_pred ccccCC
Q 041951 574 PVKAIN 579 (726)
Q Consensus 574 ~~~Al~ 579 (726)
+.+||+
T Consensus 277 ~~~a~~ 282 (282)
T PF00082_consen 277 AEKALN 282 (282)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999874
No 31
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=4.6e-40 Score=336.75 Aligned_cols=224 Identities=33% Similarity=0.521 Sum_probs=184.6
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCC
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVK 182 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~ 182 (726)
||+|||||+||+++||+|.+. ++..++|..++.....|..+|||||||||++....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~------------------------~~~~~~~~~~~~~~~~~~~~HGT~vA~ii~~~~~~ 56 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN------------------------IVGGANFTGDDNNDYQDGNGHGTHVAGIIAALDNG 56 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc------------------------ccCcccccCCCCCCCCCCCCCHHHHHHHHhcccCC
Confidence 799999999999999999853 22223332211134567889999999999987532
Q ss_pred CCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhhC
Q 041951 183 DASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAK 261 (726)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~ 261 (726)
. .+.|+||+|+|+.+|+++..+ ....++++++++|++.|++|||||||... ....+..++..+.++
T Consensus 57 ~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~~a~~~ 123 (229)
T cd07477 57 V---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKAYAA 123 (229)
T ss_pred C---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHHHHHHC
Confidence 1 238999999999999998776 66789999999999999999999999873 234556666788899
Q ss_pred CcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccc
Q 041951 262 GVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQE 337 (726)
Q Consensus 262 Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (726)
|+++|+||||++.... |+..+++|+||+++.+
T Consensus 124 giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------------------------------- 159 (229)
T cd07477 124 GILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------------------------------- 159 (229)
T ss_pred CCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------------------------------
Confidence 9999999999987654 7778899999875432
Q ss_pred cCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhh
Q 041951 338 LSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIF 417 (726)
Q Consensus 338 ~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 417 (726)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCC
Q 041951 418 YILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPL 497 (726)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 497 (726)
+.++.||++|+.. |+.|||++|+++.+.
T Consensus 160 -------------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~- 187 (229)
T cd07477 160 -------------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN- 187 (229)
T ss_pred -------------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-
Confidence 2356789999876 999999999998875
Q ss_pred ccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 041951 498 AQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 551 (726)
Q Consensus 498 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~T 551 (726)
+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 188 ------------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 ------------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ------------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 578999999999999999999999999999999999999976
No 32
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=6.7e-40 Score=348.97 Aligned_cols=248 Identities=19% Similarity=0.165 Sum_probs=181.6
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeec-CCCCCCCCC--C
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYY-TPAPYDTAR--D 164 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~-~~~~~~~~~--D 164 (726)
++++ .+|+.+++|+||+|+|||+|||+.||+|.+.-.. ...+++ ..+....+. |
T Consensus 26 ~~~~-~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 82 (297)
T cd04059 26 LNVT-PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP----------------------EASYDFNDNDPDPTPRYDD 82 (297)
T ss_pred cccH-HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc----------------------cccccccCCCCCCCCcccc
Confidence 4555 8999999999999999999999999999854111 011122 111112222 7
Q ss_pred CcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCCCCC
Q 041951 165 EEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAV 244 (726)
Q Consensus 165 ~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~ 244 (726)
..+|||||||||+|+... ..|. .||||+|+|+.+|++... ........++.++.+ .++|||||||.....
T Consensus 83 ~~gHGT~vAgiiag~~~~---~~~~-----~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~ 152 (297)
T cd04059 83 DNSHGTRCAGEIAAVGNN---GICG-----VGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDG 152 (297)
T ss_pred ccccCcceeeEEEeecCC---Cccc-----ccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCCC
Confidence 889999999999998521 1133 899999999999998654 334455666666554 469999999987422
Q ss_pred C---CcccHHHHHHHHhhh-----CCcEEEEccCCCCCCCC------CCCCCceEEEecccCCceeeeEEEeCCCeeEee
Q 041951 245 D---FSEDAISIGAFHAMA-----KGVLTLNSAGNSGPGLT------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISG 310 (726)
Q Consensus 245 ~---~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~g~~~~------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g 310 (726)
. ........++.++.+ +|++||+||||+|.... +...|++|+|||++.+
T Consensus 153 ~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~----------------- 215 (297)
T cd04059 153 KTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN----------------- 215 (297)
T ss_pred CccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC-----------------
Confidence 1 112233344444433 69999999999998332 4566789999875432
Q ss_pred EEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCcccee
Q 041951 311 YSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFV 390 (726)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~ 390 (726)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCC
Q 041951 391 VSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRG 470 (726)
Q Consensus 391 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~G 470 (726)
+.++.||++|
T Consensus 216 ----------------------------------------------------------------------g~~~~~s~~g 225 (297)
T cd04059 216 ----------------------------------------------------------------------GVRASYSEVG 225 (297)
T ss_pred ----------------------------------------------------------------------CCCcCCCCCC
Confidence 3457899999
Q ss_pred CCCCCCCCccCceEeCCCc-------EEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHH
Q 041951 471 PNAIVPEILKPDISAPGVD-------ILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSA 543 (726)
Q Consensus 471 p~~~~~~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ 543 (726)
+.. +++|||.. |+++.... ....|..++|||||||+|||++|||+|++|+|++.|
T Consensus 226 ~~~--------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~ 287 (297)
T cd04059 226 SSV--------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRD 287 (297)
T ss_pred CcE--------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHH
Confidence 987 89999987 66554431 015678899999999999999999999999999999
Q ss_pred HHHHHHcccc
Q 041951 544 IKSAIMTTAW 553 (726)
Q Consensus 544 ik~~L~~TA~ 553 (726)
||++|++||+
T Consensus 288 v~~~L~~TA~ 297 (297)
T cd04059 288 VQHILALTAR 297 (297)
T ss_pred HHHHHHHhcC
Confidence 9999999985
No 33
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7e-40 Score=337.44 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=117.0
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC------CCCCCCCCcCCcccchh
Q 041951 101 ESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA------PYDTARDEEGHGSHTAS 174 (726)
Q Consensus 101 G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~------~~~~~~D~~gHGThVAG 174 (726)
+++|+|||||||||++||+|.+. ++..+.|..+ ......|..||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~------------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAg 57 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK------------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMAR 57 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc------------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHH
Confidence 78999999999999999999853 1111122110 01123468899999999
Q ss_pred hccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-------CChHHHHHHHHHHhhCCCcEEEEcccCCCCC--C
Q 041951 175 TASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-------CDSAGVLGAFDDAIADGVDVITISIGGDSAV--D 245 (726)
Q Consensus 175 iaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-------~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~--~ 245 (726)
||+ |+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||..... .
T Consensus 58 iI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~ 119 (247)
T cd07491 58 MIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDND 119 (247)
T ss_pred HHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccc
Confidence 995 569999999999987643 3567899999999999999999999987311 1
Q ss_pred CcccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----CCCCCceEEEecccC
Q 041951 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTT 292 (726)
Q Consensus 246 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~ 292 (726)
.....+..++.+|.++|++||+||||+|.... |+..|++|+|||++.
T Consensus 120 ~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 120 NDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred cchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 12567788888999999999999999987653 677889999998653
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.3e-39 Score=328.08 Aligned_cols=220 Identities=24% Similarity=0.311 Sum_probs=174.7
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCC
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVK 182 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~ 182 (726)
||+|||||||||++||+|.+.-.. +..+.+ ..... +.....|..||||||||||++.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~~~------~~~~~--~~~~~~d~~gHGT~vAgiia~~--- 57 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVTID------LEIIV--VSAEGGDKDGHGTACAGIIKKY--- 57 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------cccccc------ccccc--CCCCCCCCCCcHHHHHHHHHcc---
Confidence 799999999999999999854110 000100 00011 1244567889999999999765
Q ss_pred CCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhhC
Q 041951 183 DASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAK 261 (726)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~ 261 (726)
+|+++|+.+|+++..+ +....+++||+||+++|++|||||||... ......+..++.++.++
T Consensus 58 ---------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~~~~~~~~~~~~~a~~~ 120 (222)
T cd07492 58 ---------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--DRDFPLLKELLEYAYKA 120 (222)
T ss_pred ---------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCcCHHHHHHHHHHHHC
Confidence 6999999999998776 78889999999999999999999999883 22335567777888889
Q ss_pred CcEEEEccCCCCCCCC-CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCC
Q 041951 262 GVLTLNSAGNSGPGLT-ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSS 340 (726)
Q Consensus 262 Gv~vV~AAGN~g~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 340 (726)
|+++|+||||++.... |+..+++|+|++...++
T Consensus 121 g~l~V~aagN~~~~~~~Pa~~~~vi~V~~~~~~~---------------------------------------------- 154 (222)
T cd07492 121 GGIIVAAAPNNNDIGTPPASFPNVIGVKSDTADD---------------------------------------------- 154 (222)
T ss_pred CCEEEEECCCCCCCCCCCccCCceEEEEecCCCC----------------------------------------------
Confidence 9999999999987666 78889999998753221
Q ss_pred CCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhh
Q 041951 341 QECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYIL 420 (726)
Q Consensus 341 ~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~ 420 (726)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccC
Q 041951 421 RKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQA 500 (726)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 500 (726)
.. +.+++ ++|+.|||.+|+++.+.
T Consensus 155 -----------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~---- 178 (222)
T cd07492 155 -----------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPH---- 178 (222)
T ss_pred -----------------------------------------Cc---ccccC--------CceEEeCCCCeEeecCC----
Confidence 00 11133 34999999999998765
Q ss_pred CcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 501 SIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 501 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
+.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 179 ---------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 179 ---------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999985
No 35
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=6.8e-39 Score=340.67 Aligned_cols=151 Identities=28% Similarity=0.364 Sum_probs=105.9
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCC
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVK 182 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~ 182 (726)
.|+|||||+|||++||+|.+.-... ...+ .....+ .........+.....|..||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~-~~~~----~~~~~~------~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY-SKNL----VPKGGY------DGKEAGETGDINDIVDKLGHGTAVAGQIAANGN- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc-cccc----ccCCCc------CCccccccCCCCcCCCCCCcHhHHHHHHhcCCC-
Confidence 4899999999999999998531000 0000 000000 000000000123446778999999999998732
Q ss_pred CCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCC-------cccHHHHH
Q 041951 183 DASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDF-------SEDAISIG 254 (726)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~-------~~~~~~~a 254 (726)
..||||+|+|+.+|+++..+ ....++++||++|++++++|||||||....... ....+..+
T Consensus 69 -----------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
T cd07482 69 -----------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKA 137 (294)
T ss_pred -----------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHH
Confidence 15999999999999998776 488899999999999999999999997632111 12345666
Q ss_pred HHHhhhCCcEEEEccCCCCCCC
Q 041951 255 AFHAMAKGVLTLNSAGNSGPGL 276 (726)
Q Consensus 255 ~~~a~~~Gv~vV~AAGN~g~~~ 276 (726)
+..+.++|++||+||||+|...
T Consensus 138 i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 138 INYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred HHHHHHCCCEEEEeCCCCCccc
Confidence 7778899999999999999754
No 36
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=330.56 Aligned_cols=346 Identities=24% Similarity=0.337 Sum_probs=262.5
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHhcCCC-------CccceEEEeccceeEEEEEeCH-----HHHHHHHcCCCeEE
Q 041951 3 VYIVYMGSLPEGEYVTSSQHQNILQEVVVGRS-------VEDILVRSYRRSFNGFAAKLTV-----DERQKLASMEKVVS 70 (726)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~i~~~y~~~~~g~s~~l~~-----~~~~~L~~~p~V~~ 70 (726)
.|||+++.-.. +..|+.++++.+.... .....--.|-.-|.-+-++-.. -+++.|..+|.|+.
T Consensus 51 EyIv~F~~y~~-----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~ 125 (1033)
T KOG4266|consen 51 EYIVRFKQYKP-----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKV 125 (1033)
T ss_pred eeEEEeccccc-----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCcee
Confidence 69999986655 5568888888775221 1112233455556655555432 25799999999999
Q ss_pred EEeceeecccc---------------------------------c--CCc----------cccCCCccccccCCCCCCcE
Q 041951 71 VFPSRTLQLHT---------------------------------T--RSW----------DFMGLNLSITRKRSVESNLI 105 (726)
Q Consensus 71 v~~~~~~~~~~---------------------------------~--~s~----------~~~g~~~~~~~~~~~G~GVv 105 (726)
|.|.+.+..-. + .+. +.++++ -+|+.|+||++|+
T Consensus 126 v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad-~LWk~GyTGa~Vk 204 (1033)
T KOG4266|consen 126 VFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGAD-HLWKKGYTGAKVK 204 (1033)
T ss_pred ecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchh-hHHhccccCCceE
Confidence 99876654210 0 001 113334 7899999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCCCc
Q 041951 106 VGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDAS 185 (726)
Q Consensus 106 VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~~~ 185 (726)
|||.|||+.-.||-|+.- ....++..+ ....|..||||.|||+|||.. .
T Consensus 205 vAiFDTGl~~~HPHFrnv-------------------------KERTNWTNE--~tLdD~lgHGTFVAGvia~~~----e 253 (1033)
T KOG4266|consen 205 VAIFDTGLRADHPHFRNV-------------------------KERTNWTNE--DTLDDNLGHGTFVAGVIAGRN----E 253 (1033)
T ss_pred EEEeecccccCCccccch-------------------------hhhcCCcCc--cccccCcccceeEeeeeccch----h
Confidence 999999999999999832 001111111 345678899999999999873 1
Q ss_pred cccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcE
Q 041951 186 FYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVL 264 (726)
Q Consensus 186 ~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~ 264 (726)
. .|.||+++|+++|||.+.. ..++.+++|+.||+...+||+|+|+|++ .+.+.|+-.-+.+...++|+
T Consensus 254 c--------~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~PFVeKVwEltAnNvI 322 (1033)
T KOG4266|consen 254 C--------LGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDLPFVEKVWELTANNVI 322 (1033)
T ss_pred h--------cccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccchHHHHHHhhccCcEE
Confidence 1 7889999999999998766 7889999999999999999999999999 67788887777788899999
Q ss_pred EEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCC
Q 041951 265 TLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSS 340 (726)
Q Consensus 265 vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 340 (726)
+|.|+||+|+-.. |+....+|.||...
T Consensus 323 MvSAiGNDGPLYGTLNNPaDQsDViGVGGId------------------------------------------------- 353 (1033)
T KOG4266|consen 323 MVSAIGNDGPLYGTLNNPADQSDVIGVGGID------------------------------------------------- 353 (1033)
T ss_pred EEEecCCCCcceeecCCcccccceeeecccc-------------------------------------------------
Confidence 9999999998764 33333444444321
Q ss_pred CCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhh
Q 041951 341 QECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYIL 420 (726)
Q Consensus 341 ~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~ 420 (726)
T Consensus 354 -------------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 354 -------------------------------------------------------------------------------- 353 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCC----CCCCCccCceEeCCCcEEeecCC
Q 041951 421 RKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNA----IVPEILKPDISAPGVDILAAFSP 496 (726)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~----~~~~~~KPDI~APG~~I~sa~~~ 496 (726)
..+.++.|||||-+. ...|++||||++.|.+|......
T Consensus 354 --------------------------------------fdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~ 395 (1033)
T KOG4266|consen 354 --------------------------------------FDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS 395 (1033)
T ss_pred --------------------------------------ccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc
Confidence 125689999999764 35899999999999999865544
Q ss_pred CccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh----cCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCCCC
Q 041951 497 LAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHV 572 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~i 572 (726)
.+...+||||.|+|.|||+++||.+ +.--++|+.+|++|+.+|.+++... -+.||+|++
T Consensus 396 -------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N----MfEQGaGkl 458 (1033)
T KOG4266|consen 396 -------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN----MFEQGAGKL 458 (1033)
T ss_pred -------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc----hhhccCcch
Confidence 5678999999999999999999976 2344699999999999999998862 579999999
Q ss_pred CccccCCC
Q 041951 573 NPVKAINP 580 (726)
Q Consensus 573 n~~~Al~~ 580 (726)
|+.++.+-
T Consensus 459 dLL~syqi 466 (1033)
T KOG4266|consen 459 DLLESYQI 466 (1033)
T ss_pred hHHHHHHH
Confidence 99998863
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=1e-37 Score=326.45 Aligned_cols=241 Identities=25% Similarity=0.346 Sum_probs=183.9
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhcccc
Q 041951 100 VESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGN 179 (726)
Q Consensus 100 ~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~ 179 (726)
+|+||+|||||+||+++||+|.+......... ...........|..+|||||||||+|+
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~HGT~vagiiag~ 59 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYV---------------------AVNDAGYASNGDGDSHGTHVAGVIAAA 59 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccccc---------------------ccccccCCCCCCCCChHHHHHHHHhcC
Confidence 69999999999999999999986421110000 000001134557889999999999998
Q ss_pred CCCCCccccccccceeeecCCcEEEEEEeeCCCC--CChHHHHHHHHHHhhCCCcEEEEcccCCCCCC-----------C
Q 041951 180 EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG--CDSAGVLGAFDDAIADGVDVITISIGGDSAVD-----------F 246 (726)
Q Consensus 180 ~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~-----------~ 246 (726)
... ....|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||...... .
T Consensus 60 ~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~ 130 (267)
T cd04848 60 RDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAAT 130 (267)
T ss_pred cCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccc
Confidence 532 2238999999999999998764 56677899999999999999999999884221 2
Q ss_pred cccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----------CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEecc
Q 041951 247 SEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINS 315 (726)
Q Consensus 247 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 315 (726)
....+...+..+.++|+++|+||||++.... +...+++|+||+.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~--------------------- 189 (267)
T cd04848 131 QGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG--------------------- 189 (267)
T ss_pred cchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC---------------------
Confidence 4455667777888999999999999987543 23346788888764331
Q ss_pred CCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCE
Q 041951 316 FAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPA 395 (726)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~ 395 (726)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeec--ccCCCCCC
Q 041951 396 VAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVG--FSSRGPNA 473 (726)
Q Consensus 396 ~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSS~Gp~~ 473 (726)
.... ||++|+..
T Consensus 190 ------------------------------------------------------------------~~~~~~~s~~~~~~ 203 (267)
T cd04848 190 ------------------------------------------------------------------TIASYSYSNRCGVA 203 (267)
T ss_pred ------------------------------------------------------------------Ccccccccccchhh
Confidence 1222 47777643
Q ss_pred CCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 474 IVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 474 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
-.++++|||.+|+++.+.. ...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 204 -----~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 204 -----ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred -----hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 1347999999999987631 157889999999999999999999999999999999999999985
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-34 Score=318.21 Aligned_cols=352 Identities=24% Similarity=0.327 Sum_probs=230.4
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCC-C--CChHHHHHHHHHHhhCCCcEEEEcccCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPG-G--CDSAGVLGAFDDAIADGVDVITISIGGDS 242 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-g--~~~~~i~~ai~~A~~~g~dVInlSlG~~~ 242 (726)
..|||||||||+|+..+.. ...|+||+|+|+.+++.+.. | -+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 4599999999999975432 23788999999999996542 2 45567899999999999999999999885
Q ss_pred CCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCC
Q 041951 243 AVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFA 317 (726)
Q Consensus 243 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 317 (726)
..+.....++..-..+.++|+++|+||||+|+... +.....+|.|||.-......
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~-------------------- 441 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ-------------------- 441 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH--------------------
Confidence 44444444544443445889999999999999876 22223677777643221000
Q ss_pred CCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEE
Q 041951 318 MKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVA 397 (726)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~ 397 (726)
T Consensus 442 -------------------------------------------------------------------------------- 441 (1304)
T KOG1114|consen 442 -------------------------------------------------------------------------------- 441 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCC
Q 041951 398 VSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPE 477 (726)
Q Consensus 398 i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 477 (726)
...+.. ..-...+..+|||||+. ||
T Consensus 442 -------a~y~~~----------------------------------------------e~vp~~~YtWsSRgP~~--DG 466 (1304)
T KOG1114|consen 442 -------AEYSVR----------------------------------------------EPVPSNPYTWSSRGPCL--DG 466 (1304)
T ss_pred -------hhhhhh----------------------------------------------ccCCCCccccccCCCCc--CC
Confidence 000000 01124467899999998 99
Q ss_pred CccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh----cCCCCCHHHHHHHHHcccc
Q 041951 478 ILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 478 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~ik~~L~~TA~ 553 (726)
-+--.|.|||+.|.+--.-+. ..-..|+|||||+|+++|++|||++ .+-.+||..||.+|++||+
T Consensus 467 ~lGVsi~APggAiAsVP~~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~ 535 (1304)
T KOG1114|consen 467 DLGVSISAPGGAIASVPQYTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTAT 535 (1304)
T ss_pred CcceEEecCCccccCCchhhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhccc
Confidence 999999999999865322211 4567899999999999999999955 5688999999999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCccccCCCCceecCChhhHHHHHhh-CCCCCcceEEecCC-CCccCCCCCCCCCCCCCCCc
Q 041951 554 AMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCN-IGYDESKVRIISGD-GSACPKGSDKAPPKDLNYPS 631 (726)
Q Consensus 554 ~~~~~~~~~~~~~~G~G~in~~~Al~~~lv~~~~~~~~~~~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ln~ps 631 (726)
++++. .++.+|.|+|++.+|.+ ||. -+ ..| +..+.+|... ..+|...
T Consensus 536 ~l~~i----d~faqG~GmlqVdkAyE-----------yL~--q~~~~f-~~~l~f~~v~VgN~~srG------------- 584 (1304)
T KOG1114|consen 536 KLGDI----DSFAQGQGMLQVDKAYE-----------YLA--QSDFSF-PNALGFINVNVGNSCSRG------------- 584 (1304)
T ss_pred ccCcc----chhccCcceeehhHHHH-----------HHH--HhhhcC-CccceeEEEeeccccccc-------------
Confidence 99887 47999999999999975 221 00 011 1112222222 1234321
Q ss_pred EEEeecCCCceEEEEEEEE----EEcC---CCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCe
Q 041951 632 MAAQVSSGKSFVVNFPRTV----TNVG---VANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAI 704 (726)
Q Consensus 632 ~~~~~~~~~~~~~~~~rtv----~n~g---~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~ 704 (726)
|-+.+......+..++.-| .|-- .....|.+....-.-..+---|+.|-+ .++.+.+.|+|+++. ...+.
T Consensus 585 IyLRep~~~~~p~e~~i~VePiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~-l~~G~ 661 (1304)
T KOG1114|consen 585 IYLREPTQVCSPSEHTIGVEPIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTG-LAPGV 661 (1304)
T ss_pred eEecCCcccCCccccceeccccccCccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcC-CCCCc
Confidence 1121111000111122211 1110 011223332222111223334888888 667799999999987 56678
Q ss_pred EEEEEEEEc-----CCeeEEeEEEEE
Q 041951 705 VSASLVWSD-----GNHWVRSPIVVH 725 (726)
Q Consensus 705 ~~G~~~~~~-----~~~~v~~P~~v~ 725 (726)
+++.|.--| .+..+|||+.|.
T Consensus 662 hy~eV~gyD~~~p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 662 HYTEVLGYDTANPSRGPLFRIPVTVI 687 (1304)
T ss_pred ceEEEEEeecCCcccCceEEeeeEEE
Confidence 888888654 568999999985
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.6e-33 Score=284.30 Aligned_cols=114 Identities=20% Similarity=0.228 Sum_probs=85.2
Q ss_pred CCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHH--hhCCCcEEEEcc
Q 041951 161 TARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDA--IADGVDVITISI 238 (726)
Q Consensus 161 ~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A--~~~g~dVInlSl 238 (726)
...|..+|||||||||||. .|++|+++|+..++.. .....+.++++|+ .+.+++||||||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCC
Confidence 3557899999999999987 4567999999766522 1233466778887 667999999999
Q ss_pred cCCCCCC-----CcccHHHHHHHHhhhC-CcEEEEccCCCCCCCC-------CCCCCceEEEecccC
Q 041951 239 GGDSAVD-----FSEDAISIGAFHAMAK-GVLTLNSAGNSGPGLT-------ASVAPWLMSVAASTT 292 (726)
Q Consensus 239 G~~~~~~-----~~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~~-------~~~~p~vitVga~~~ 292 (726)
|...... ...+.+..+++.+.++ |+++|+||||+|.... |..++++|+|||++.
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~ 160 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDR 160 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecC
Confidence 9874332 1234566677776655 9999999999998431 667789999998653
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=8.8e-31 Score=268.35 Aligned_cols=157 Identities=30% Similarity=0.430 Sum_probs=117.5
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC--CCCCCCCCcCCcccchhhccccCC
Q 041951 104 LIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA--PYDTARDEEGHGSHTASTASGNEV 181 (726)
Q Consensus 104 VvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~--~~~~~~D~~gHGThVAGiaag~~~ 181 (726)
|+|||||+|++++||+|.... .... ....+... ......+..+||||||++|++...
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~---------~~~~------------~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~ 59 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLF---------GGGD------------GGNDDDDNENGPTDPDDGNGHGTHVAGIIAASAN 59 (241)
T ss_pred CEEEEEeCCCCCCCcchhccc---------cCcc------------cccccccCcCCCCCCCCCCCcHHHHHHHHhcCCC
Confidence 689999999999999872110 0000 01111000 012455788999999999998853
Q ss_pred CCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHh-hCCCcEEEEcccCCCCCCCcccHHHHHHHHhh
Q 041951 182 KDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAI-ADGVDVITISIGGDSAVDFSEDAISIGAFHAM 259 (726)
Q Consensus 182 ~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~-~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~ 259 (726)
.. ...|+||+++|+.+|+....+ .....+++++++++ +.+++|||||||..... ....+...+..+.
T Consensus 60 ~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~~~~ 128 (241)
T cd00306 60 NG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAIDYAL 128 (241)
T ss_pred CC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHHHHH
Confidence 21 117999999999999987765 67788999999999 89999999999998322 3456677777787
Q ss_pred hC-CcEEEEccCCCCCCCC-----CCCCCceEEEecccC
Q 041951 260 AK-GVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTT 292 (726)
Q Consensus 260 ~~-Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~ 292 (726)
++ |+++|+||||.+.... ++..+++|+||+++.
T Consensus 129 ~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~ 167 (241)
T cd00306 129 AKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDR 167 (241)
T ss_pred HhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCc
Confidence 77 9999999999987763 778899999998654
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-23 Score=239.03 Aligned_cols=266 Identities=29% Similarity=0.426 Sum_probs=195.5
Q ss_pred ccccc--CCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCC-CCCCCcCCc
Q 041951 93 SITRK--RSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYD-TARDEEGHG 169 (726)
Q Consensus 93 ~~~~~--~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~-~~~D~~gHG 169 (726)
..|.. +.+|+||.|+|||+||+..||+|.+... ..++|..+... ...|..+||
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~d~~~hG 186 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV------------------------AGGDFVDGDPEPPFLDDNGHG 186 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc------------------------cccccccCCCCCCCCCCCCCc
Confidence 67887 9999999999999999999999986421 00222111111 257899999
Q ss_pred ccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCC-C-CChHHHHHHHHHHhhCC--CcEEEEcccCCCCCC
Q 041951 170 SHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPG-G-CDSAGVLGAFDDAIADG--VDVITISIGGDSAVD 245 (726)
Q Consensus 170 ThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-g-~~~~~i~~ai~~A~~~g--~dVInlSlG~~~~~~ 245 (726)
|||+|++++... .+..+ ..|+||+++++.++++... + ....+++++++++++.+ +++||||+|.. ...
T Consensus 187 t~vag~ia~~~~--~~~~~-----~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~~~ 258 (508)
T COG1404 187 THVAGTIAAVIF--DNGAG-----VAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-LSD 258 (508)
T ss_pred ceeeeeeeeecc--cCCCc-----cccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-ccc
Confidence 999999998421 11112 3899999999999999865 5 66777899999999999 99999999986 233
Q ss_pred CcccHHHHHHHHhhhCC-cEEEEccCCCCCCCC------CCCCC--ceEEEecccCCceeeeEEEeCCCeeEeeEEeccC
Q 041951 246 FSEDAISIGAFHAMAKG-VLTLNSAGNSGPGLT------ASVAP--WLMSVAASTTDRLFVDKVALGNGKAISGYSINSF 316 (726)
Q Consensus 246 ~~~~~~~~a~~~a~~~G-v~vV~AAGN~g~~~~------~~~~p--~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 316 (726)
.....+..++..+...| +++|+++||.+.... |...+ .+++|++...
T Consensus 259 ~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------------------------ 314 (508)
T COG1404 259 SASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------------------------ 314 (508)
T ss_pred cccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC------------------------
Confidence 34455666667777666 999999999987651 22222 4444444221
Q ss_pred CCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEE
Q 041951 317 AMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAV 396 (726)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~ 396 (726)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCC
Q 041951 397 AVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVP 476 (726)
Q Consensus 397 ~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~ 476 (726)
...++.||++|+..
T Consensus 315 ---------------------------------------------------------------~~~~~~~s~~g~~~--- 328 (508)
T COG1404 315 ---------------------------------------------------------------SDTVASFSNDGSPT--- 328 (508)
T ss_pred ---------------------------------------------------------------CCccccccccCCCC---
Confidence 14567889999741
Q ss_pred CCccCceEeCCCcEEe-----ecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCC-CCCHHHHHHHHHc
Q 041951 477 EILKPDISAPGVDILA-----AFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHP-DWSPSAIKSAIMT 550 (726)
Q Consensus 477 ~~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~ls~~~ik~~L~~ 550 (726)
..+++|||.+|.+ .++.. ...|..++|||||+|||+|++||+++.+| .+++.+++..+..
T Consensus 329 ---~~~~~apg~~i~~~~~~~~~~~~-----------~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~ 394 (508)
T COG1404 329 ---GVDIAAPGVNILSLSAVNTLPGD-----------GADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVT 394 (508)
T ss_pred ---CcceeCCCccccccccceeeeCC-----------ccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhh
Confidence 2299999999987 33331 02499999999999999999999999999 8999999999998
Q ss_pred cccc--cCCCCCCCCCcccCCCCCCccccCC
Q 041951 551 TAWA--MNSSKNTEAEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 551 TA~~--~~~~~~~~~~~~~G~G~in~~~Al~ 579 (726)
++.. ... ....++.|..+...+..
T Consensus 395 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 395 TAGLTPLSG-----VDNLVGGGLANLDAAAT 420 (508)
T ss_pred ccccccCCc-----cccccccCccccccccc
Confidence 8874 222 24567777666666554
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-19 Score=184.54 Aligned_cols=169 Identities=13% Similarity=0.198 Sum_probs=107.2
Q ss_pred cccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCC-CcCCccc
Q 041951 93 SITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARD-EEGHGSH 171 (726)
Q Consensus 93 ~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D-~~gHGTh 171 (726)
++|..+++|++|.+||+|.||||.|||+..+ +. .+..++|..|+.+.+-++. .| .+.|||.
T Consensus 152 ~awa~g~tgknvttaimddgvdymhpdlk~n-yn---------aeasydfssndpfpypryt--------ddwfnshgtr 213 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-YN---------AEASYDFSSNDPFPYPRYT--------DDWFNSHGTR 213 (629)
T ss_pred HHHhhcccCCCceEEeecCCchhcCcchhcc-cC---------ceeecccccCCCCCCCccc--------chhhhccCcc
Confidence 8999999999999999999999999999843 10 1222333333222211111 12 5789999
Q ss_pred chhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh-CCCcEEEEcccCCCCCCCcccH
Q 041951 172 TASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA-DGVDVITISIGGDSAVDFSEDA 250 (726)
Q Consensus 172 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~-~g~dVInlSlG~~~~~~~~~~~ 250 (726)
|||-+++...+ +..| .|||.+.++.-+|+++. .+-.|+++|-...-+ ...+|.+-|||........+.|
T Consensus 214 cagev~aardn--gicg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgktvdgp 283 (629)
T KOG3526|consen 214 CAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGP 283 (629)
T ss_pred ccceeeeeccC--Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCc
Confidence 99988766532 2333 69999999999999854 344555554332211 3478999999987433333332
Q ss_pred ---HHHHHHHhh-----hCCcEEEEccCCCCCCCC-----CCCCCceEEEec
Q 041951 251 ---ISIGAFHAM-----AKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAA 289 (726)
Q Consensus 251 ---~~~a~~~a~-----~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga 289 (726)
...++.+-+ ..|-++|.|.|..|.... .+.+-|.|++-+
T Consensus 284 rnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 284 RNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred hhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 222333322 347789999998887654 233346666643
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.70 E-value=1.2e-16 Score=174.32 Aligned_cols=99 Identities=26% Similarity=0.273 Sum_probs=79.0
Q ss_pred ceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhC---CCcEEEEcccCCCCC--CCcccHHHHHHHHhhhCCcEEEE
Q 041951 193 TARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIAD---GVDVITISIGGDSAV--DFSEDAISIGAFHAMAKGVLTLN 267 (726)
Q Consensus 193 ~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~---g~dVInlSlG~~~~~--~~~~~~~~~a~~~a~~~Gv~vV~ 267 (726)
.+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||+|||..... ....+.+..++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999997542 45677888888877 999999999988321 11235667777888899999999
Q ss_pred ccCCCCCCCC-------------CCCCCceEEEecccCCc
Q 041951 268 SAGNSGPGLT-------------ASVAPWLMSVAASTTDR 294 (726)
Q Consensus 268 AAGN~g~~~~-------------~~~~p~vitVga~~~~~ 294 (726)
|+||+|.... |+.+||+++||+++...
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999987641 78899999999987653
No 44
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.92 E-value=3.7e-09 Score=89.73 Aligned_cols=77 Identities=31% Similarity=0.446 Sum_probs=57.1
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHhc----C-CCCccceEEEeccceeEEEEEeCHHHHHHHHcCCCeEEEEeceee
Q 041951 3 VYIVYMGSLPEGEYVTSSQHQNILQEVVV----G-RSVEDILVRSYRRSFNGFAAKLTVDERQKLASMEKVVSVFPSRTL 77 (726)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~l~~~~~----~-~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~ 77 (726)
+|||.|+++.... ...+.|.+++.+++. . .....++.+.|+..||||+++++++++++|+++|+|++|+|++.+
T Consensus 1 ~YIV~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v 79 (82)
T PF05922_consen 1 RYIVVFKDDASAA-SSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVV 79 (82)
T ss_dssp EEEEEE-TTSTHH-CHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEE
T ss_pred CEEEEECCCCCcc-hhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceE
Confidence 6999999886521 225567777765433 1 346789999998899999999999999999999999999999988
Q ss_pred ccc
Q 041951 78 QLH 80 (726)
Q Consensus 78 ~~~ 80 (726)
+++
T Consensus 80 ~l~ 82 (82)
T PF05922_consen 80 SLH 82 (82)
T ss_dssp EE-
T ss_pred ecC
Confidence 764
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.79 E-value=5.2e-08 Score=89.96 Aligned_cols=110 Identities=38% Similarity=0.606 Sum_probs=87.3
Q ss_pred EEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEee------ccchHHHHhcC
Q 041951 300 VALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQS------FKNYPEVRKAG 373 (726)
Q Consensus 300 ~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~------~~~~~~~~~~G 373 (726)
++++||+.+.|++++.... ..+++++..... .......|.+..+...+++||||+|++ .++..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~---~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS---GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC---CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6789999999999997554 456777633311 234557899888888899999999987 24577889999
Q ss_pred ceEEEEeccCCCccc---eeeecCEEEeehhhHHHHHHHHhcCc
Q 041951 374 AAGTVLLNNEFDKVS---FVVSLPAVAVSQDSLSSLISYKESTK 414 (726)
Q Consensus 374 ~~g~i~~~~~~~~~~---~~~~~p~~~i~~~~g~~l~~~~~~~~ 414 (726)
|.|+|++++...... ....+|.+.|..++|..|++|++++.
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~ 120 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTS 120 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCC
Confidence 999999988765432 23679999999999999999999877
No 46
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.68 E-value=9e-08 Score=90.43 Aligned_cols=108 Identities=30% Similarity=0.419 Sum_probs=79.9
Q ss_pred CceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCccce----e
Q 041951 320 GRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKVSF----V 390 (726)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~~~----~ 390 (726)
..+.+++|.+. |....+...+++|||++|+| .+|..+++++||.++|++++....... .
T Consensus 25 ~~~~~lv~~g~------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~ 92 (143)
T cd02133 25 GKTYELVDAGL------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEA 92 (143)
T ss_pred CcEEEEEEccC------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCC
Confidence 45778888654 33344556689999999987 568889999999999999888653311 2
Q ss_pred eecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEE-ecceeecCCCCCeeecccCC
Q 041951 391 VSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEI-LKTEAVKDFDAPVVVGFSSR 469 (726)
Q Consensus 391 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~a~fSS~ 469 (726)
..+|+++|+..+|..|++++++ . +++ +..+.. ..+++.++.||||
T Consensus 93 ~~iP~v~Is~~dG~~L~~~l~~-~--------------------------------~~i~~~~~~~-~~~~p~va~fSsr 138 (143)
T cd02133 93 VFIPVVFISKEDGEALKAALES-S--------------------------------KKLTFNTKKE-KATNPDLADFSSR 138 (143)
T ss_pred CeEeEEEecHHHHHHHHHHHhC-C--------------------------------CeEEEEeccc-cccCCccccccCc
Confidence 4689999999999999999865 2 223 233333 3566789999999
Q ss_pred CCCC
Q 041951 470 GPNA 473 (726)
Q Consensus 470 Gp~~ 473 (726)
||..
T Consensus 139 gp~g 142 (143)
T cd02133 139 GPWG 142 (143)
T ss_pred CCCC
Confidence 9963
No 47
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.50 E-value=1.7e-06 Score=78.05 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=60.4
Q ss_pred EEEeecCCCceEEEEEEEEEEcCCCCeeEEEEEec--------CCc----------e-EEEEEcCEEEEeeCCcEEEEEE
Q 041951 632 MAAQVSSGKSFVVNFPRTVTNVGVANSTYRAKVLQ--------NSK----------I-SIKVVPDVLSFKSLNEKKSFSV 692 (726)
Q Consensus 632 ~~~~~~~~~~~~~~~~rtv~n~g~~~~ty~~~~~~--------~~g----------~-~v~v~p~~l~~~~~g~~~~~~v 692 (726)
|+|.+.. ...+++.||+|.|+.+.+|+++... ..| . .+...|.+|++ ++|++++|+|
T Consensus 1 i~L~d~~---~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~v 76 (112)
T PF06280_consen 1 ISLKDTG---NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTV 76 (112)
T ss_dssp EEEEEE----SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEE
T ss_pred CCccccC---CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEE
Confidence 3455553 2578999999999999999998661 011 1 57778899999 8999999999
Q ss_pred EEEeec---CCCCCeEEEEEEEEc-CCe-eEEeEEE
Q 041951 693 TVTGKG---VPQGAIVSASLVWSD-GNH-WVRSPIV 723 (726)
Q Consensus 693 t~~~~~---~~~~~~~~G~~~~~~-~~~-~v~~P~~ 723 (726)
+++++. .....+++|+|.+++ .++ .+++||+
T Consensus 77 ti~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 77 TITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EEE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 999965 244679999999996 444 8999985
No 48
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.3e-06 Score=100.38 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=87.4
Q ss_pred cccccCCCCCCcEEEEEe-ccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCccc
Q 041951 93 SITRKRSVESNLIVGVID-TGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSH 171 (726)
Q Consensus 93 ~~~~~~~~G~GVvVaVID-tGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGTh 171 (726)
.+++.+.+|+|+.||||| -|-.+...|+.- -|+.. |-.-..+.++. +.+ -..+|+||
T Consensus 219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~~--------Fd~~~---Gip~~~~~~V~----~ig-------~g~~~~~~ 276 (1174)
T COG4934 219 ALYESGATGKGETIAIIDAYGDPYNNQDLYS--------FDQQY---GIPNPILSRVT----YIG-------PGIGSGTG 276 (1174)
T ss_pred ecccCCCCCCCcEEEEEeccCCcccHHHHHH--------HHHhh---CCCCCCceEEE----EeC-------CCCCCCCC
Confidence 455668899999999999 665444433320 01000 00000011111 100 24567777
Q ss_pred chhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCC-cEEEEcccCCC--CCCC--
Q 041951 172 TASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGV-DVITISIGGDS--AVDF-- 246 (726)
Q Consensus 172 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~-dVInlSlG~~~--~~~~-- 246 (726)
=+.=+ -+.-....-+||+|+|..|-.- ......+..|+.+-...-+ -+|-+||+... ...+
T Consensus 277 g~~E~-----------sLDVE~s~A~AP~A~I~lvvap---~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~ 342 (1174)
T COG4934 277 GAEET-----------SLDVEWSHAMAPKANIDLVVAP---NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPG 342 (1174)
T ss_pred ccccc-----------eeehhhhhccCccCceEEEEcC---CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChH
Confidence 55311 1122234678999999998661 1222333333333322211 33335666431 1222
Q ss_pred cccHHHHHHHHhhhCCcEEEEccCCCCCCCC----------CCCCCceEEEec
Q 041951 247 SEDAISIGAFHAMAKGVLTLNSAGNSGPGLT----------ASVAPWLMSVAA 289 (726)
Q Consensus 247 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----------~~~~p~vitVga 289 (726)
.-+.+......|..+|+.+++|+|.+|.... |+.+|++.+||.
T Consensus 343 ~~~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 343 YADLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 2233444445677899999999999976552 889999999997
No 49
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.5e-06 Score=94.39 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=98.9
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecC--CCCC---CCC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYT--PAPY---DTA 162 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~--~~~~---~~~ 162 (726)
+.+. ..|..+++|+++.++|.|+|++..||+..+. +. ..+..++. +++. .+.
T Consensus 20 ~~v~-~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~~---------------------~~~s~d~~~~~~~p~~~~~~ 76 (431)
T KOG3525|consen 20 LNVQ-NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-YD---------------------PLGSYDVNRHDNDPEPRCDG 76 (431)
T ss_pred ceee-eccccCCCCCceEEEEeeccccccCcccccc-cC---------------------cceeEeeecCCCCcccccCC
Confidence 4445 8999999999999999999999999999843 11 22333331 1111 122
Q ss_pred CCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh-CCCcEEEEcccCC
Q 041951 163 RDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA-DGVDVITISIGGD 241 (726)
Q Consensus 163 ~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~-~g~dVInlSlG~~ 241 (726)
.....|||-||+-.+..... . --..|+++++++..++++.. ...+...+...... .-+++-..|||..
T Consensus 77 ~~~~~~g~~Ca~~~a~~~~~---~-----~C~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~scsw~pd 145 (431)
T KOG3525|consen 77 TNENKHGTRCAGCVAARANN---L-----TCGVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSCSWGPD 145 (431)
T ss_pred CCccccCCCCCcccccccCC---C-----cCCCCcccCccccceeeeee---ecccceecccccCCCCCceeecCcCCcc
Confidence 23578999999999877411 1 11278999999999999742 11133333332222 3578999999977
Q ss_pred CCCCCcc---cHHHHHHHH-----hhhCCcEEEEccCCCCCCCC
Q 041951 242 SAVDFSE---DAISIGAFH-----AMAKGVLTLNSAGNSGPGLT 277 (726)
Q Consensus 242 ~~~~~~~---~~~~~a~~~-----a~~~Gv~vV~AAGN~g~~~~ 277 (726)
......+ .....+... ...+|-+.+++.||.|....
T Consensus 146 dd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 146 DDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 4222111 122222232 33678899999999887653
No 50
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=97.91 E-value=1.2e-05 Score=70.90 Aligned_cols=71 Identities=31% Similarity=0.478 Sum_probs=56.2
Q ss_pred CCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCC-------ccceeeecCEEEeehhhHHHHH
Q 041951 340 SQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFD-------KVSFVVSLPAVAVSQDSLSSLI 407 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~-------~~~~~~~~p~~~i~~~~g~~l~ 407 (726)
...|.+......+++||||+|+| .+|..+++++||.|+|+++.... .......+|+++|+..+|..|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45577777888899999999988 67899999999999999992111 1134578999999999999999
Q ss_pred HHH
Q 041951 408 SYK 410 (726)
Q Consensus 408 ~~~ 410 (726)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 875
No 51
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.81 E-value=5.7e-05 Score=69.28 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=62.7
Q ss_pred CCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc-------c-eeeecCEEEeehhhHHHH
Q 041951 340 SQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV-------S-FVVSLPAVAVSQDSLSSL 406 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~-------~-~~~~~p~~~i~~~~g~~l 406 (726)
..+|.+..+...+++|||++|+| .+|..+++++|+.++|++|+..... . ....+|.++|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 47899888877889999999998 5688999999999999998876321 1 234689999999999999
Q ss_pred HHHHhcCc
Q 041951 407 ISYKESTK 414 (726)
Q Consensus 407 ~~~~~~~~ 414 (726)
++++..+.
T Consensus 109 ~~~l~~g~ 116 (122)
T cd04816 109 RRRLGAGE 116 (122)
T ss_pred HHHHcCCC
Confidence 99998776
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.71 E-value=0.00011 Score=66.88 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=60.9
Q ss_pred CCCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCccc-------eeeecCEEEeehhhHHHH
Q 041951 339 SSQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKVS-------FVVSLPAVAVSQDSLSSL 406 (726)
Q Consensus 339 ~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~~-------~~~~~p~~~i~~~~g~~l 406 (726)
....|.+.... .+++|||++|+| .+|..+++++|+.|+|++++...... ....+|+++|+.++|..|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45679888774 459999999987 46788999999999999988764221 234699999999999999
Q ss_pred HHHHhcCc
Q 041951 407 ISYKESTK 414 (726)
Q Consensus 407 ~~~~~~~~ 414 (726)
+.|++.+.
T Consensus 105 ~~~l~~g~ 112 (118)
T cd04818 105 KAALAAGG 112 (118)
T ss_pred HHHHhcCC
Confidence 99998765
No 53
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.70 E-value=0.00011 Score=66.61 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=67.4
Q ss_pred ceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc-------c
Q 041951 321 RRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV-------S 388 (726)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~-------~ 388 (726)
..+|++... ...+|.+..+...+++|+|++++| .+|..+++++||.++||+|+..... .
T Consensus 20 ~~~~~~~~~---------~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~ 90 (120)
T cd02129 20 TLLPLRNLT---------SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEY 90 (120)
T ss_pred cceeeecCC---------CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Confidence 346666643 346799888877889999999998 7899999999999999999986311 1
Q ss_pred eeeecCEEEeehhhHHHHHHHHhcC
Q 041951 389 FVVSLPAVAVSQDSLSSLISYKEST 413 (726)
Q Consensus 389 ~~~~~p~~~i~~~~g~~l~~~~~~~ 413 (726)
....||+++|+..+|..|.+.+..+
T Consensus 91 ~~v~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 91 EKIDIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred cCCcccEEEEeHHHHHHHHHHhccC
Confidence 3456899999999999998877654
No 54
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=97.61 E-value=0.00054 Score=62.80 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=59.0
Q ss_pred CCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCC-Ccc------ceeeecCEEEeehhhHHHHHH
Q 041951 341 QECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEF-DKV------SFVVSLPAVAVSQDSLSSLIS 408 (726)
Q Consensus 341 ~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~-~~~------~~~~~~p~~~i~~~~g~~l~~ 408 (726)
..|.+..+ +.+++|||++++| .+|..+++++||.++|++|+.. ... .....+|.+.|+.++|..|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46876554 3579999999998 5789999999999999998873 221 123469999999999999999
Q ss_pred HHhcCc
Q 041951 409 YKESTK 414 (726)
Q Consensus 409 ~~~~~~ 414 (726)
.+..+.
T Consensus 111 ~l~~g~ 116 (122)
T cd02130 111 ALANGG 116 (122)
T ss_pred HHhcCC
Confidence 998876
No 55
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.58 E-value=0.00026 Score=66.12 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=63.1
Q ss_pred CCCCcCCCCC--CCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCC-Ccc------ceeeecCEEEeehhhHH
Q 041951 339 SSQECNPGCV--NGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEF-DKV------SFVVSLPAVAVSQDSLS 404 (726)
Q Consensus 339 ~~~~c~~~~~--~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~-~~~------~~~~~~p~~~i~~~~g~ 404 (726)
...+|.+... ...++.|+|+|++| .+|..+++++||.++|++|+.. ... .....+|.++|+..+|.
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578998776 56789999999998 6889999999999999999986 211 11236899999999999
Q ss_pred HHHHHHhcCc
Q 041951 405 SLISYKESTK 414 (726)
Q Consensus 405 ~l~~~~~~~~ 414 (726)
.|++.+..+.
T Consensus 123 ~l~~~l~~G~ 132 (138)
T cd02122 123 EILELLERGI 132 (138)
T ss_pred HHHHHHHcCC
Confidence 9999998876
No 56
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.54 E-value=0.00031 Score=63.82 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=60.4
Q ss_pred CCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCc-c----------ceeeecCEEEeehhhH
Q 041951 340 SQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDK-V----------SFVVSLPAVAVSQDSL 403 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~-~----------~~~~~~p~~~i~~~~g 403 (726)
..+|.+... ..+++|+|++++| .+|..+++++||.++|++|+.... . .....||.++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 5679999999998 688999999999999999976531 1 1234689999999999
Q ss_pred HHHHHHHhcCc
Q 041951 404 SSLISYKESTK 414 (726)
Q Consensus 404 ~~l~~~~~~~~ 414 (726)
..|++.+..+.
T Consensus 100 ~~L~~~l~~g~ 110 (118)
T cd02127 100 YMIRKTLERLG 110 (118)
T ss_pred HHHHHHHHcCC
Confidence 99999998877
No 57
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.51 E-value=0.00024 Score=65.20 Aligned_cols=76 Identities=33% Similarity=0.400 Sum_probs=61.9
Q ss_pred CCCCcCCCC--CCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc----c-----eeeecCEEEeehhh
Q 041951 339 SSQECNPGC--VNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV----S-----FVVSLPAVAVSQDS 402 (726)
Q Consensus 339 ~~~~c~~~~--~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~----~-----~~~~~p~~~i~~~~ 402 (726)
....|.+.. +...+++||||+|++ .+|..+++++|+.|+|++++..... . ....+|.+.|+..+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345687776 667889999999987 4688899999999999998876321 1 23579999999999
Q ss_pred HHHHHHHHhcCc
Q 041951 403 LSSLISYKESTK 414 (726)
Q Consensus 403 g~~l~~~~~~~~ 414 (726)
|..|+.++.++.
T Consensus 109 g~~l~~~~~~~~ 120 (126)
T cd00538 109 GEALLSLLEAGK 120 (126)
T ss_pred HHHHHHHHhcCC
Confidence 999999998766
No 58
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.44 E-value=0.00034 Score=63.43 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=59.4
Q ss_pred cCCCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCc-c--------ceeeecCEEEeehhhH
Q 041951 338 LSSQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDK-V--------SFVVSLPAVAVSQDSL 403 (726)
Q Consensus 338 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~-~--------~~~~~~p~~~i~~~~g 403 (726)
....+|.+. +..+++|||++++| .+|..+++++||.++|++|+.... . .....+|+++++..++
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 345689766 55789999999998 688999999999999999877642 1 2234789999999999
Q ss_pred HHHHHHHhcC
Q 041951 404 SSLISYKEST 413 (726)
Q Consensus 404 ~~l~~~~~~~ 413 (726)
.+|..++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9998876654
No 59
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.39 E-value=0.0014 Score=60.55 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=59.5
Q ss_pred cCCCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc----ceeeecCEEEeehhhHHHHHH
Q 041951 338 LSSQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV----SFVVSLPAVAVSQDSLSSLIS 408 (726)
Q Consensus 338 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~----~~~~~~p~~~i~~~~g~~l~~ 408 (726)
....+|.+...+..+++|+|++++| .+|..+++++|+.++|++|+..... .....+|.+.+ ..+|..|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 4457899876666689999999998 5889999999999999998876432 22233565656 999999999
Q ss_pred HHhcCc
Q 041951 409 YKESTK 414 (726)
Q Consensus 409 ~~~~~~ 414 (726)
.+..+.
T Consensus 118 ~l~~G~ 123 (129)
T cd02124 118 ALAAGS 123 (129)
T ss_pred HHhcCC
Confidence 988775
No 60
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.38 E-value=0.00046 Score=63.61 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=59.8
Q ss_pred CCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCc------c------c---eeeecCEEEee
Q 041951 340 SQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDK------V------S---FVVSLPAVAVS 399 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~------~------~---~~~~~p~~~i~ 399 (726)
...|.+... +.+++|||++++| .+|..+++++|+.++|++|+.... . . ....||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 5568999999998 678999999999999999876532 1 1 13578999999
Q ss_pred hhhHHHHHHHHhcCc
Q 041951 400 QDSLSSLISYKESTK 414 (726)
Q Consensus 400 ~~~g~~l~~~~~~~~ 414 (726)
..+|..|+..+..+.
T Consensus 106 ~~dG~~L~~~l~~~~ 120 (126)
T cd02126 106 SKEGSKLLAAIKEHQ 120 (126)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999988765
No 61
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.24 E-value=0.00082 Score=63.07 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=59.2
Q ss_pred CCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCccc---------eeeecCEEEeehhhHHH
Q 041951 340 SQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKVS---------FVVSLPAVAVSQDSLSS 405 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~~---------~~~~~p~~~i~~~~g~~ 405 (726)
.+.|.+.. .+++|+|++++| .+|..+++++||.++|++|+...... ....||+++|+..+|..
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798765 368999999999 68899999999999999987753211 13478999999999999
Q ss_pred HHHHHhcCc
Q 041951 406 LISYKESTK 414 (726)
Q Consensus 406 l~~~~~~~~ 414 (726)
|++.+..+.
T Consensus 125 L~~~l~~g~ 133 (139)
T cd02132 125 LNKSLDQGK 133 (139)
T ss_pred HHHHHHcCC
Confidence 999998776
No 62
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.19 E-value=0.00092 Score=62.32 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=52.8
Q ss_pred CCCCcccccEEEEee----------ccchHHHHhcCceEEEEeccC--CCcc----c---eeeecCEEEeehhhHHHHHH
Q 041951 348 VNGSLVKGKIVICQS----------FKNYPEVRKAGAAGTVLLNNE--FDKV----S---FVVSLPAVAVSQDSLSSLIS 408 (726)
Q Consensus 348 ~~~~~~~gkiv~~~~----------~~~~~~~~~~G~~g~i~~~~~--~~~~----~---~~~~~p~~~i~~~~g~~l~~ 408 (726)
+.+.+++|||+|++| .+|..+++++||.++|+||+. .... . ....+|++.|+..+|..|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 445679999999988 256889999999999999998 3321 1 13579999999999999998
Q ss_pred HHhcC
Q 041951 409 YKEST 413 (726)
Q Consensus 409 ~~~~~ 413 (726)
.+..+
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 87544
No 63
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.16 E-value=0.0012 Score=60.83 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=59.5
Q ss_pred CCCcCCCCCC--CC----cccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc--------------ceeeecC
Q 041951 340 SQECNPGCVN--GS----LVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV--------------SFVVSLP 394 (726)
Q Consensus 340 ~~~c~~~~~~--~~----~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~--------------~~~~~~p 394 (726)
..+|.+.... +. ...++|++++| .+|..+++++||.++|++|+..... .....+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578876543 22 37789999999 6899999999999999999876421 1134689
Q ss_pred EEEeehhhHHHHHHHHhcCc
Q 041951 395 AVAVSQDSLSSLISYKESTK 414 (726)
Q Consensus 395 ~~~i~~~~g~~l~~~~~~~~ 414 (726)
+++|+..+|..|+..+..+.
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~ 121 (127)
T cd02125 102 SALITKAFGEKLKKAISNGE 121 (127)
T ss_pred EEEECHHHHHHHHHHHhcCC
Confidence 99999999999999998876
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.14 E-value=0.0012 Score=62.94 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=62.0
Q ss_pred CCCcCCCCCCC---CcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc-------c--eeeecCEEEeehhh
Q 041951 340 SQECNPGCVNG---SLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV-------S--FVVSLPAVAVSQDS 402 (726)
Q Consensus 340 ~~~c~~~~~~~---~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~-------~--~~~~~p~~~i~~~~ 402 (726)
.++|.+....+ .++.|+|++++| .+|..+++++||.++|++|+..... . ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45798776544 789999999998 6899999999999999999875432 1 14579999999999
Q ss_pred HHHHHHHHhcCc
Q 041951 403 LSSLISYKESTK 414 (726)
Q Consensus 403 g~~l~~~~~~~~ 414 (726)
|..|+.++...+
T Consensus 130 g~~L~~~l~~~~ 141 (153)
T cd02123 130 GEILKKYASYEK 141 (153)
T ss_pred HHHHHHHHhcCC
Confidence 999999988765
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.03 E-value=0.0048 Score=56.93 Aligned_cols=83 Identities=23% Similarity=0.199 Sum_probs=62.1
Q ss_pred CceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeec-------cchHHHHhcCceEEEEeccCCCccc----
Q 041951 320 GRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSF-------KNYPEVRKAGAAGTVLLNNEFDKVS---- 388 (726)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~-------~~~~~~~~~G~~g~i~~~~~~~~~~---- 388 (726)
..+.++++.+... +..+...+++|||+++++. +|..+++++||.|+|++++......
T Consensus 22 ~~~~~lV~~g~G~------------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 22 EAKGEPVDAGYGL------------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred CeeEEEEEeCCCC------------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 4567888866432 1223355799999999882 4678999999999999987765321
Q ss_pred ------eeeecCEEEeehhhHHHHHHHHhcCc
Q 041951 389 ------FVVSLPAVAVSQDSLSSLISYKESTK 414 (726)
Q Consensus 389 ------~~~~~p~~~i~~~~g~~l~~~~~~~~ 414 (726)
....+|.+.|+.+++..|...++.+.
T Consensus 90 ~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 90 EGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred ccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 12469999999999999999888765
No 66
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.29 E-value=0.086 Score=46.36 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=60.5
Q ss_pred EEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEcCCeeEEeEE
Q 041951 643 VVNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWSDGNHWVRSPI 722 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~v~~P~ 722 (726)
..+.+.+|+|.|..+..|++.........++++|..-.+ ++|++.++.|++.+.. ..+.+.+.|...-.+..+.+|+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~--~~g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK--PLGDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--CCceEEEEEEEEECCeEEEEEE
Confidence 456778899999999999987654334567788887677 8999999999999543 2356789888876666788887
Q ss_pred EE
Q 041951 723 VV 724 (726)
Q Consensus 723 ~v 724 (726)
-+
T Consensus 98 ~a 99 (102)
T PF14874_consen 98 KA 99 (102)
T ss_pred EE
Confidence 54
No 67
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.67 E-value=0.15 Score=42.47 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=37.5
Q ss_pred eEEEEEEEEEEcCCCC-eeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 041951 642 FVVNFPRTVTNVGVAN-STYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKG 698 (726)
Q Consensus 642 ~~~~~~rtv~n~g~~~-~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 698 (726)
...+++.+|+|.|... ...++++..|.|-.+...|.++.--++|++++++++|+++.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 3678999999999765 45888889999999888888875338999999999999986
No 68
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=93.48 E-value=0.22 Score=46.37 Aligned_cols=65 Identities=28% Similarity=0.264 Sum_probs=50.0
Q ss_pred CCcccccEEEEeeccc------------------hHHHHhcCceEEEEeccCCC-------cc----ceeeecCEEEeeh
Q 041951 350 GSLVKGKIVICQSFKN------------------YPEVRKAGAAGTVLLNNEFD-------KV----SFVVSLPAVAVSQ 400 (726)
Q Consensus 350 ~~~~~gkiv~~~~~~~------------------~~~~~~~G~~g~i~~~~~~~-------~~----~~~~~~p~~~i~~ 400 (726)
..+++|||+++++... ...+.++||.++|+++.... +. .....+|.+.|+.
T Consensus 35 ~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ 114 (134)
T cd04815 35 AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISV 114 (134)
T ss_pred hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEech
Confidence 4579999999977322 57889999999999985421 11 1124599999999
Q ss_pred hhHHHHHHHHhcCc
Q 041951 401 DSLSSLISYKESTK 414 (726)
Q Consensus 401 ~~g~~l~~~~~~~~ 414 (726)
+++..|...++.+.
T Consensus 115 ed~~~L~r~l~~g~ 128 (134)
T cd04815 115 EDADMLERLAARGK 128 (134)
T ss_pred hcHHHHHHHHhCCC
Confidence 99999998888765
No 69
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.35 E-value=0.67 Score=41.98 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=40.4
Q ss_pred EEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecC
Q 041951 643 VVNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGV 699 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 699 (726)
.-.++.+++|.+..+.+|+++++.++|+.+......+++ ++|++..+.|.|.++..
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 345788999999999999999999889999654488999 89999999999999874
No 70
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.84 E-value=0.26 Score=46.73 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=45.2
Q ss_pred ceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeec-----------------------cchHHHHhcCceEE
Q 041951 321 RRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSF-----------------------KNYPEVRKAGAAGT 377 (726)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~-----------------------~~~~~~~~~G~~g~ 377 (726)
.+-++||.+... ....|....+...+++||||++.+. .|..++...|+.|+
T Consensus 20 vtg~lVfvGyGi------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 93 (151)
T cd04822 20 VTAPVVFAGYGI------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAV 93 (151)
T ss_pred ceEeEEEecCCc------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEE
Confidence 345777776542 2345766666778899999999652 36788899999999
Q ss_pred EEeccCCCcc
Q 041951 378 VLLNNEFDKV 387 (726)
Q Consensus 378 i~~~~~~~~~ 387 (726)
|++++.....
T Consensus 94 Iv~~d~~~~~ 103 (151)
T cd04822 94 IVVNGPNSHS 103 (151)
T ss_pred EEEeCCcccC
Confidence 9999876543
No 71
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=92.26 E-value=0.18 Score=49.32 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=49.9
Q ss_pred CCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCc-------------------c--------c---------
Q 041951 350 GSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDK-------------------V--------S--------- 388 (726)
Q Consensus 350 ~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~-------------------~--------~--------- 388 (726)
..+++|||+++++ .+|..+++++||.|+|||++.... . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4578999999987 678999999999999999884110 0 0
Q ss_pred -eeeecCEEEeehhhHHHHHHHHhcCc
Q 041951 389 -FVVSLPAVAVSQDSLSSLISYKESTK 414 (726)
Q Consensus 389 -~~~~~p~~~i~~~~g~~l~~~~~~~~ 414 (726)
..-.||++-|+..++..|++.+.-..
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~~ 157 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGPV 157 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCCC
Confidence 01248899999999999998875443
No 72
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=91.99 E-value=0.35 Score=45.04 Aligned_cols=58 Identities=31% Similarity=0.236 Sum_probs=44.6
Q ss_pred ceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeec-----------------cchHHHHhcCceEEEEeccC
Q 041951 321 RRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSF-----------------KNYPEVRKAGAAGTVLLNNE 383 (726)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~-----------------~~~~~~~~~G~~g~i~~~~~ 383 (726)
.+-++||.+... ....|....+...+++||||++.+. .|...+.++||.|+|++++.
T Consensus 22 v~gelVfvGyG~------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~ 95 (137)
T cd04820 22 VEAPLVFVGYGL------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTP 95 (137)
T ss_pred ceEeEEEecCCc------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 356777776542 2356777777778999999999862 37889999999999999875
Q ss_pred C
Q 041951 384 F 384 (726)
Q Consensus 384 ~ 384 (726)
.
T Consensus 96 ~ 96 (137)
T cd04820 96 R 96 (137)
T ss_pred c
Confidence 4
No 73
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=91.76 E-value=2.6 Score=38.45 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=52.1
Q ss_pred eEEEEEEEEEEcCCCCeeEEEEEec----CCce--------------------EEEEEcCEEEEeeCCcEEEEEEEEEee
Q 041951 642 FVVNFPRTVTNVGVANSTYRAKVLQ----NSKI--------------------SIKVVPDVLSFKSLNEKKSFSVTVTGK 697 (726)
Q Consensus 642 ~~~~~~rtv~n~g~~~~ty~~~~~~----~~g~--------------------~v~v~p~~l~~~~~g~~~~~~vt~~~~ 697 (726)
.+.+++.+|+|.++.+.+|.+.+.. ..|+ -+++ |..+++ +++++++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 3778999999999999999987542 1221 1233 556888 899999999999998
Q ss_pred cCCCCCeEEEEEEEE
Q 041951 698 GVPQGAIVSASLVWS 712 (726)
Q Consensus 698 ~~~~~~~~~G~~~~~ 712 (726)
...-.+.+-|-|.+.
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 865667777777765
No 74
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=91.45 E-value=0.39 Score=45.00 Aligned_cols=59 Identities=27% Similarity=0.294 Sum_probs=45.3
Q ss_pred CceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEee-----------------------ccchHHHHhcCceE
Q 041951 320 GRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQS-----------------------FKNYPEVRKAGAAG 376 (726)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----------------------~~~~~~~~~~G~~g 376 (726)
....|+|+.+... ....|....+...+++||||++.+ ..|...++++||.|
T Consensus 19 ~~~aelVfvGyGi------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 19 IKDAPLVFVGYGI------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred ccceeeEEecCCc------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 3457888876542 234677778888899999999854 13778899999999
Q ss_pred EEEeccCC
Q 041951 377 TVLLNNEF 384 (726)
Q Consensus 377 ~i~~~~~~ 384 (726)
+|++++..
T Consensus 93 vIii~~~~ 100 (142)
T cd04814 93 VLIVHELA 100 (142)
T ss_pred EEEEeCCC
Confidence 99999865
No 75
>COG1470 Predicted membrane protein [Function unknown]
Probab=89.38 E-value=2.8 Score=46.23 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=57.0
Q ss_pred EEEEEEEEEEcCCCCee-EEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 041951 643 VVNFPRTVTNVGVANST-YRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWS 712 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~t-y~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~ 712 (726)
..++...+.|.|+.+.| -.+++..|.|-++.|+|.++---++|+++++.+|++++.....+-++=+|.-+
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 56778889999988766 78899999999999999987655999999999999998744445555556654
No 76
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=84.52 E-value=2.8 Score=46.28 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=51.2
Q ss_pred CCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc---------ceeeecCEEEeehhhHHHHHHHHhcCc
Q 041951 350 GSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV---------SFVVSLPAVAVSQDSLSSLISYKESTK 414 (726)
Q Consensus 350 ~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~---------~~~~~~p~~~i~~~~g~~l~~~~~~~~ 414 (726)
...++||++++.| .+|...++++||.++++.|+...-. .....||.++++.++++.+......+.
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~ 169 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSND 169 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCC
Confidence 3458899999988 7899999999999999999943211 235679999999999999876544443
No 77
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=83.91 E-value=13 Score=33.74 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=46.0
Q ss_pred EEEEEEEEcCCCCeeEEEEEec---CCc----eEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 041951 645 NFPRTVTNVGVANSTYRAKVLQ---NSK----ISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWS 712 (726)
Q Consensus 645 ~~~rtv~n~g~~~~ty~~~~~~---~~g----~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~ 712 (726)
+.+.+|+|.|+.+..+.+.+.. ..+ -.+-++|..+.+ ++|+++++.| +.....+.+....=+|.+.
T Consensus 17 ~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 17 SASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp EEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred EEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 5578899999988888887764 111 156789999999 8999999999 7644333444444455554
No 78
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=82.00 E-value=1.7 Score=43.88 Aligned_cols=36 Identities=36% Similarity=0.463 Sum_probs=30.9
Q ss_pred CCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCC
Q 041951 350 GSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFD 385 (726)
Q Consensus 350 ~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~ 385 (726)
..+++||||++.+ .+|..+++.+||.|+|++++...
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4579999999976 46899999999999999998643
No 79
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=81.81 E-value=0.96 Score=53.43 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=22.8
Q ss_pred cCCCCCCcEEEEEeccCCCCCCCCC
Q 041951 97 KRSVESNLIVGVIDTGIWPESESFS 121 (726)
Q Consensus 97 ~~~~G~GVvVaVIDtGid~~Hp~f~ 121 (726)
..++|+||+|||+|||||+.-|-+.
T Consensus 76 PeYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 76 PEYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred cCCCCCceEEEEeecCCCCCCCCce
Confidence 3789999999999999999998886
No 80
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=81.27 E-value=1.5 Score=41.30 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=30.1
Q ss_pred CcccccEEEEee-----ccchHHHHhcCceEEEEeccCC
Q 041951 351 SLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEF 384 (726)
Q Consensus 351 ~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~ 384 (726)
-+++|||++++. ..|..+++..|+.|+|||.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 569999999985 7899999999999999998753
No 81
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=79.60 E-value=10 Score=42.46 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=48.0
Q ss_pred EEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 041951 643 VVNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKG 698 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 698 (726)
.-..+.++.|.+..+.+|+++++..++..+...++.+++ ++|++.++.|+|..++
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 445788899999999999999999999998875468899 8999999999999875
No 82
>COG1470 Predicted membrane protein [Function unknown]
Probab=78.45 E-value=25 Score=39.05 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=46.0
Q ss_pred EEEEEEEEEEcCCCCeeEEEEEe-cCCceEEEEEcC-----EEEEeeCCcEEEEEEEEEeec
Q 041951 643 VVNFPRTVTNVGVANSTYRAKVL-QNSKISIKVVPD-----VLSFKSLNEKKSFSVTVTGKG 698 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~~~-~~~g~~v~v~p~-----~l~~~~~g~~~~~~vt~~~~~ 698 (726)
+..|+.++.|.|..+.+|.+++. .|+|....+.-. +|.+ ++||+++|+|.|.++.
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~ 345 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSL 345 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCC
Confidence 56788899999999999999999 788877665543 5666 8999999999999876
No 83
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=72.36 E-value=29 Score=30.33 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=40.5
Q ss_pred EEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 041951 643 VVNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKG 698 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 698 (726)
..+...+|+|.++....|++.-..|.... |.|..-.+ ++|++.++.|++....
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEE-CCCCEEEEEEEEEecc
Confidence 45667799999999999999988887654 67998888 8999999999998843
No 84
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=63.02 E-value=18 Score=34.61 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=29.8
Q ss_pred CCCCCcccccEEEEee------------------------ccchHHHHhcCceEEEEeccC
Q 041951 347 CVNGSLVKGKIVICQS------------------------FKNYPEVRKAGAAGTVLLNNE 383 (726)
Q Consensus 347 ~~~~~~~~gkiv~~~~------------------------~~~~~~~~~~G~~g~i~~~~~ 383 (726)
++...|++||||++.. ..|...+.+.||.|+|++...
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 4556789999999874 127889999999999998764
No 85
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=62.02 E-value=26 Score=29.24 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=30.1
Q ss_pred EEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEcCC
Q 041951 671 SIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWSDGN 715 (726)
Q Consensus 671 ~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~ 715 (726)
.|++.|..+++ ..|++..|+++++.... .- ...+.|+..+
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~---~~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSA---KV-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCC---Cc-cceEEEEECC
Confidence 57889999999 79999999999765431 12 6778897643
No 86
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=59.52 E-value=90 Score=29.18 Aligned_cols=68 Identities=6% Similarity=0.134 Sum_probs=49.7
Q ss_pred EEEEEEEEEEcCCCC-eeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 041951 643 VVNFPRTVTNVGVAN-STYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWS 712 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~-~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~ 712 (726)
.+.+...+-|..+.. .--++.......+++--.|..+++ .|++.++++.+++... ...+..||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-tetGvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS-TETGVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe-ccCCEEEEEEEEe
Confidence 344555566764432 223455555677888778999999 8999999999999986 5568999999985
No 87
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=55.84 E-value=30 Score=29.15 Aligned_cols=54 Identities=20% Similarity=0.078 Sum_probs=25.6
Q ss_pred EEEEEEEEEcCCCCeeE--------EEEEecCCc---------eEEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 041951 644 VNFPRTVTNVGVANSTY--------RAKVLQNSK---------ISIKVVPDVLSFKSLNEKKSFSVTVTGKG 698 (726)
Q Consensus 644 ~~~~rtv~n~g~~~~ty--------~~~~~~~~g---------~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 698 (726)
+.++.+|+|.++.+.+. -+.+..+.| --++-.-...++ ++||+++|+.+++...
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS--
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 34667788887654433 233332332 222222346677 8999999998887765
No 88
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.57 E-value=23 Score=38.19 Aligned_cols=74 Identities=22% Similarity=0.172 Sum_probs=56.3
Q ss_pred CCcCCCCCC---CCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc-------ceeeecCEEEeehhhHHH
Q 041951 341 QECNPGCVN---GSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV-------SFVVSLPAVAVSQDSLSS 405 (726)
Q Consensus 341 ~~c~~~~~~---~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~-------~~~~~~p~~~i~~~~g~~ 405 (726)
++|.+.... .......++++.| .+|..+++++|..++|++|+..... .....++..+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 467654331 2345567788877 7899999999999999999876542 345678999999999999
Q ss_pred HHHHHhcCc
Q 041951 406 LISYKESTK 414 (726)
Q Consensus 406 l~~~~~~~~ 414 (726)
|.+|.....
T Consensus 143 l~~~~~~~~ 151 (348)
T KOG4628|consen 143 LSSYAGRTE 151 (348)
T ss_pred HHHhhcccc
Confidence 999866655
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=55.30 E-value=1e+02 Score=25.98 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=32.3
Q ss_pred eEEEEEEEEEEcCCCC-eeEEEEEecCCceEEEEEcCEE-EEeeCCcEEEEEEEEEee
Q 041951 642 FVVNFPRTVTNVGVAN-STYRAKVLQNSKISIKVVPDVL-SFKSLNEKKSFSVTVTGK 697 (726)
Q Consensus 642 ~~~~~~rtv~n~g~~~-~ty~~~~~~~~g~~v~v~p~~l-~~~~~g~~~~~~vt~~~~ 697 (726)
...+++.+|+|.|... ..+.+.+... |..+ .-..+ .+ ++|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 3678889999999874 5567766544 3232 22223 55 789999888888876
No 90
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=53.75 E-value=47 Score=24.34 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=26.6
Q ss_pred EEEEEcCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEE
Q 041951 648 RTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTV 694 (726)
Q Consensus 648 rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~ 694 (726)
.+++|.|+.+..-+ .+...-|-.. ++.+.=.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt~-~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCTT-AEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCEE-eeCCcceE-CCCCEEEEEEEC
Confidence 36789998765432 2333334332 33444346 899999998874
No 91
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=45.84 E-value=1.9e+02 Score=35.68 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=35.9
Q ss_pred CcEEEeecCCCceEEEEEEEEEEcC-CCCeeEEEEEe-----cCCceEEEEEcCEEEEeeCCcE-EEEEEEEEeec
Q 041951 630 PSMAAQVSSGKSFVVNFPRTVTNVG-VANSTYRAKVL-----QNSKISIKVVPDVLSFKSLNEK-KSFSVTVTGKG 698 (726)
Q Consensus 630 ps~~~~~~~~~~~~~~~~rtv~n~g-~~~~ty~~~~~-----~~~g~~v~v~p~~l~~~~~g~~-~~~~vt~~~~~ 698 (726)
++..+.+..+ +++.+|+=.| +...+-++.+. +-.|.+......+|+| ++||+ |+++|.+--+.
T Consensus 407 ~~Y~V~En~G-----tV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF-~PGEt~KtItV~IIDDd 476 (928)
T TIGR00845 407 GHYTCLENCG-----TVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVF-KPGETQKEFRIGIIDDD 476 (928)
T ss_pred CeEEEeecCc-----EEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEE-CCCceEEEEEEEEccCC
Confidence 4555555432 3444444334 33444444433 4467788777889999 67776 56666665443
No 92
>PLN03080 Probable beta-xylosidase; Provisional
Probab=44.92 E-value=59 Score=39.55 Aligned_cols=76 Identities=20% Similarity=0.136 Sum_probs=44.5
Q ss_pred EEEEEEEEEEcCCCCeeEEEE--EecCCceEEEEEc-------CEEEEeeCCcEEEEEEEEEe-ec----CCCCCeE--E
Q 041951 643 VVNFPRTVTNVGVANSTYRAK--VLQNSKISIKVVP-------DVLSFKSLNEKKSFSVTVTG-KG----VPQGAIV--S 706 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~--~~~~~g~~v~v~p-------~~l~~~~~g~~~~~~vt~~~-~~----~~~~~~~--~ 706 (726)
..+++.+|||+|+....-.+- +..|.+ .+. .| .++.+ ++||+++++++++. .. .....++ .
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~-~~~-~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~ 761 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPV-VPG-VPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPL 761 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCcc-CCC-CcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeC
Confidence 477899999999876554443 333422 111 12 35566 89999999999986 42 1223332 4
Q ss_pred EEEEEE--cCCeeEEeE
Q 041951 707 ASLVWS--DGNHWVRSP 721 (726)
Q Consensus 707 G~~~~~--~~~~~v~~P 721 (726)
|...+. +..|.|+++
T Consensus 762 G~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 762 GDHVLMLGDLEHSLSIE 778 (779)
T ss_pred ccEEEEEeCCccceEEe
Confidence 544432 345666654
No 93
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=39.64 E-value=2.4e+02 Score=24.58 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=35.7
Q ss_pred EEEEEEEEEEcCCCC-eeEEEE-----EecCCce---EEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 041951 643 VVNFPRTVTNVGVAN-STYRAK-----VLQNSKI---SIKVVPDVLSFKSLNEKKSFSVTVTGKG 698 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~-~ty~~~-----~~~~~g~---~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 698 (726)
..++..+++|..+.. .+-++. ++. .|+ .+......+++ ++|++.++++++....
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 678889999998876 553332 333 355 35566677788 8999999999998865
No 94
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=39.52 E-value=1.1e+02 Score=23.22 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=27.6
Q ss_pred eEEEEEEEEEEcCCCCee-EEEEEecCCceEEEEEcCEEEE
Q 041951 642 FVVNFPRTVTNVGVANST-YRAKVLQNSKISIKVVPDVLSF 681 (726)
Q Consensus 642 ~~~~~~rtv~n~g~~~~t-y~~~~~~~~g~~v~v~p~~l~~ 681 (726)
...+++.+++|.|....+ ..++-..|.|+.+ .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 378899999999987644 5555567888765 4777665
No 95
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=39.12 E-value=3e+02 Score=25.05 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=43.4
Q ss_pred eEEEEEEEEEEcCCCCeeEEEE------EecCCce----EEEE---EcCEEEEeeCCcEEEEEEEEEeecCCCC--CeEE
Q 041951 642 FVVNFPRTVTNVGVANSTYRAK------VLQNSKI----SIKV---VPDVLSFKSLNEKKSFSVTVTGKGVPQG--AIVS 706 (726)
Q Consensus 642 ~~~~~~rtv~n~g~~~~ty~~~------~~~~~g~----~v~v---~p~~l~~~~~g~~~~~~vt~~~~~~~~~--~~~~ 706 (726)
+...+..++||.|..+ .++. .....|. ...- .+..+++ ++|++..+.|+......... ....
T Consensus 18 g~~~~~l~~tN~s~~~--C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~~~~~~~~~~~~ 94 (131)
T PF14016_consen 18 GQRHATLTFTNTSDTP--CTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNVGSGGGCKPVTP 94 (131)
T ss_pred CccEEEEEEEECCCCc--EEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecCCCCCCcCcccc
Confidence 3557888999998753 3322 1112222 1111 3457888 89999999999998653333 2222
Q ss_pred EEEEEE--cCCeeEEeEE
Q 041951 707 ASLVWS--DGNHWVRSPI 722 (726)
Q Consensus 707 G~~~~~--~~~~~v~~P~ 722 (726)
..|... ++...+++|+
T Consensus 95 ~~l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 95 AGLTVTPPGGTAPVTVPW 112 (131)
T ss_pred CEEEEECCCCCccEEEeC
Confidence 223333 3445555553
No 96
>PRK13203 ureB urease subunit beta; Reviewed
Probab=34.73 E-value=98 Score=27.13 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=28.9
Q ss_pred EEEEEEEEEcCCCCee----EEEEEe---------cCCceEEEEEc--CEEEEeeCCcEEEEEE
Q 041951 644 VNFPRTVTNVGVANST----YRAKVL---------QNSKISIKVVP--DVLSFKSLNEKKSFSV 692 (726)
Q Consensus 644 ~~~~rtv~n~g~~~~t----y~~~~~---------~~~g~~v~v~p--~~l~~~~~g~~~~~~v 692 (726)
.+++.+|+|+|+.+.. |+.--. ..-|..+.+ | +.+.| ++|+++++++
T Consensus 20 ~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 81 (102)
T PRK13203 20 ETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRF-EPGQTREVEL 81 (102)
T ss_pred CEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeE-CCCCeEEEEE
Confidence 4578899999998633 332110 112444444 3 35778 8999998876
No 97
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=34.26 E-value=93 Score=37.85 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=35.9
Q ss_pred eEEEEEEEEEEcCCCCeeEEEE--EecCCceEEEEEc-------CEEEEeeCCcEEEEEEEEEeec
Q 041951 642 FVVNFPRTVTNVGVANSTYRAK--VLQNSKISIKVVP-------DVLSFKSLNEKKSFSVTVTGKG 698 (726)
Q Consensus 642 ~~~~~~rtv~n~g~~~~ty~~~--~~~~~g~~v~v~p-------~~l~~~~~g~~~~~~vt~~~~~ 698 (726)
...+++.+|||+|..+..-.+. +..|.+ ++. .| .++.+ ++||++++++++....
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTA-SMS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCC-CCC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 3678999999999875443332 334432 121 23 35567 8999999999998754
No 98
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=34.05 E-value=1.1e+02 Score=26.93 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=29.0
Q ss_pred EEEEEEEEEcCCCCee----EEEEEe---------cCCceEEEEEc--CEEEEeeCCcEEEEEE
Q 041951 644 VNFPRTVTNVGVANST----YRAKVL---------QNSKISIKVVP--DVLSFKSLNEKKSFSV 692 (726)
Q Consensus 644 ~~~~rtv~n~g~~~~t----y~~~~~---------~~~g~~v~v~p--~~l~~~~~g~~~~~~v 692 (726)
.+++.+|+|.|+.+.. |+.--. ..-|..+.+ | +.+.| ++|+++++++
T Consensus 20 ~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 81 (101)
T cd00407 20 EAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDI-PAGTAVRF-EPGEEKEVEL 81 (101)
T ss_pred CEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecc-cCCCeEEE-CCCCeEEEEE
Confidence 4577899999998633 332111 112444444 3 35778 8999998876
No 99
>PRK13202 ureB urease subunit beta; Reviewed
Probab=33.95 E-value=1e+02 Score=27.05 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=29.0
Q ss_pred EEEEEEEEEcCCCCee----EEEEEe---------cCCceEEEEEc--CEEEEeeCCcEEEEEE
Q 041951 644 VNFPRTVTNVGVANST----YRAKVL---------QNSKISIKVVP--DVLSFKSLNEKKSFSV 692 (726)
Q Consensus 644 ~~~~rtv~n~g~~~~t----y~~~~~---------~~~g~~v~v~p--~~l~~~~~g~~~~~~v 692 (726)
.+++.+|+|.|+.+.. |+.--. ..-|..+.+ | +.+.| ++|+++++++
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 82 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDI-PAATAVRF-EPGIPQIVGL 82 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCccccc-CCCCeEEE-CCCCeEEEEE
Confidence 3678899999998633 332111 112444444 3 35778 8999998876
No 100
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=31.28 E-value=1.1e+02 Score=26.69 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=28.9
Q ss_pred EEEEEEEEEcCCCCee----EEEEEe---------cCCceEEEEEc--CEEEEeeCCcEEEEEE
Q 041951 644 VNFPRTVTNVGVANST----YRAKVL---------QNSKISIKVVP--DVLSFKSLNEKKSFSV 692 (726)
Q Consensus 644 ~~~~rtv~n~g~~~~t----y~~~~~---------~~~g~~v~v~p--~~l~~~~~g~~~~~~v 692 (726)
.+++.+|+|.|+.+.. |+.--. +.-|..+.+ | +.+.| ++|+++++++
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 81 (101)
T TIGR00192 20 KTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDI-PSGTAVRF-EPGEEKSVEL 81 (101)
T ss_pred cEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCccccc-CCCCeEeE-CCCCeEEEEE
Confidence 4577889999998633 332111 112444444 3 35778 8999998876
No 101
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=30.60 E-value=42 Score=24.14 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=18.6
Q ss_pred HHHHHhcCCCCCHHHHHHHHHcc
Q 041951 529 AAYVKSFHPDWSPSAIKSAIMTT 551 (726)
Q Consensus 529 aALl~q~~P~ls~~~ik~~L~~T 551 (726)
+--|++.+|+++...|+..|...
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHc
Confidence 34678999999999999999764
No 102
>PRK13205 ureB urease subunit beta; Reviewed
Probab=30.47 E-value=71 Score=29.95 Aligned_cols=48 Identities=6% Similarity=0.187 Sum_probs=29.0
Q ss_pred EEEEEEEEEcCCCCee----EEEEEec---------CCceEEEEEc--CEEEEeeCCcEEEEEEE
Q 041951 644 VNFPRTVTNVGVANST----YRAKVLQ---------NSKISIKVVP--DVLSFKSLNEKKSFSVT 693 (726)
Q Consensus 644 ~~~~rtv~n~g~~~~t----y~~~~~~---------~~g~~v~v~p--~~l~~~~~g~~~~~~vt 693 (726)
.+++.+|+|+|+.+.. |+.--.. .-|..+.+ | +.+.| ++|+++++++.
T Consensus 20 ~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdI-PAGTAVRF-EPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDI-PSGTAVRL-EPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 4678899999998633 3321111 12444444 3 35677 78888888763
No 103
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=30.06 E-value=1.1e+02 Score=26.73 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=24.7
Q ss_pred EEEEEEEEEEcCCCCee----EEEEEe---------cCCceEEEEEcC--EEEEeeCCcEEEEEE
Q 041951 643 VVNFPRTVTNVGVANST----YRAKVL---------QNSKISIKVVPD--VLSFKSLNEKKSFSV 692 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~t----y~~~~~---------~~~g~~v~v~p~--~l~~~~~g~~~~~~v 692 (726)
..+++.+|+|.|+.+.. |+.--. ..-|..+.+ |+ .+.| ++|+++++++
T Consensus 18 r~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-PaGTavRF-EPG~~k~V~L 80 (100)
T PF00699_consen 18 RERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDI-PAGTAVRF-EPGDTKEVEL 80 (100)
T ss_dssp SEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-S-STT-EEEE--TT-EEEEEE
T ss_pred CcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCc-CCCCeEEE-CCCCcEEEEE
Confidence 35678899999998633 211000 012444544 42 5677 8899888866
No 104
>PRK15019 CsdA-binding activator; Provisional
Probab=29.87 E-value=45 Score=31.54 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=27.4
Q ss_pred eeeccccchhHHHHHHHHHHHhcCCCCCHHHHHH
Q 041951 513 NIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKS 546 (726)
Q Consensus 513 ~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~ 546 (726)
..+.|.| =|+.|-|++|||.+.+-+.+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444555 48999999999999999999999865
No 105
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=29.63 E-value=57 Score=30.82 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=51.2
Q ss_pred CCCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc-------------ceeeecCEEEeeh
Q 041951 339 SSQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV-------------SFVVSLPAVAVSQ 400 (726)
Q Consensus 339 ~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~-------------~~~~~~p~~~i~~ 400 (726)
...+|.+... .....+.+.+++| ..|..++.++|+.++|+.++..... .....+|+.++-.
T Consensus 73 Pp~aC~elrN-~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 73 PPHACEELRN-EIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred ChhHHHHHhh-cccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 3456765432 3456788889888 6788999999999999987765432 2245799999988
Q ss_pred hhHHHHHHHHh
Q 041951 401 DSLSSLISYKE 411 (726)
Q Consensus 401 ~~g~~l~~~~~ 411 (726)
.+|..++..++
T Consensus 152 ~~Gy~ir~sL~ 162 (193)
T KOG3920|consen 152 VTGYYIRVSLK 162 (193)
T ss_pred cceEEEehhHH
Confidence 88865554443
No 106
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=29.47 E-value=3.7e+02 Score=29.29 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=27.5
Q ss_pred eEEEEEEEEEEcCCCCeeE---E-EEEe--c----------C------CceEEEEEcCEEEEeeCCcEEEEEEEEEe
Q 041951 642 FVVNFPRTVTNVGVANSTY---R-AKVL--Q----------N------SKISIKVVPDVLSFKSLNEKKSFSVTVTG 696 (726)
Q Consensus 642 ~~~~~~rtv~n~g~~~~ty---~-~~~~--~----------~------~g~~v~v~p~~l~~~~~g~~~~~~vt~~~ 696 (726)
++.+++.+|||.|+++..- + +++. . | .| ++|+|++ -+ .+||+++++|+++-
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~-pI-~PGETrtl~V~a~d 335 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNS-PI-APGETRTLTVEAQD 335 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCC-Cc-CCCceEEEEEEeeh
Confidence 5788999999999875332 1 1111 1 1 23 3445553 23 79999999988853
No 107
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=29.34 E-value=4.5e+02 Score=24.10 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=15.9
Q ss_pred EEEeeCCcEEEEEEEEEeec
Q 041951 679 LSFKSLNEKKSFSVTVTGKG 698 (726)
Q Consensus 679 l~~~~~g~~~~~~vt~~~~~ 698 (726)
++.+.+|+.+.|.|.+.+.+
T Consensus 75 VTWtapgqf~~f~vs~~~~P 94 (124)
T cd08523 75 VTWKAPSQEVRAKVSLRAEP 94 (124)
T ss_pred EEEcCCCceEEEEEEeecCC
Confidence 55657888899999988765
No 108
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.55 E-value=49 Score=30.92 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=27.7
Q ss_pred eeeccccchhHHHHHHHHHHHhcCCCCCHHHHHH
Q 041951 513 NIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKS 546 (726)
Q Consensus 513 ~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~ 546 (726)
..+.|.| =|+.|-|++|||.+.+-+.+|++|.+
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3455666 48999999999999999999999864
No 109
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=27.24 E-value=45 Score=22.82 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHH
Q 041951 520 MSCPHAAGVAAYV 532 (726)
Q Consensus 520 mAaP~VAG~aALl 532 (726)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998844
No 110
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=26.60 E-value=49 Score=30.92 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=27.4
Q ss_pred eeeccccchhHHHHHHHHHHHhcCCCCCHHHHHH
Q 041951 513 NIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKS 546 (726)
Q Consensus 513 ~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~ 546 (726)
..+.|.| =|+.|-|++|||.+.+-+.||++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444555 58999999999999999999999854
No 111
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=26.48 E-value=1.4e+02 Score=24.32 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=22.5
Q ss_pred eEEEEEEEEEEcCCCCee-EEEEEecCCceEE
Q 041951 642 FVVNFPRTVTNVGVANST-YRAKVLQNSKISI 672 (726)
Q Consensus 642 ~~~~~~rtv~n~g~~~~t-y~~~~~~~~g~~v 672 (726)
...+++.+|+|.|+.... ..+.-..|.|+.+
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 377899999999987644 5555556777765
No 112
>PRK13201 ureB urease subunit beta; Reviewed
Probab=26.26 E-value=1.5e+02 Score=27.21 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=29.0
Q ss_pred EEEEEEEEEcCCCCee----EEEEEe---------cCCceEEEEEc--CEEEEeeCCcEEEEEEE
Q 041951 644 VNFPRTVTNVGVANST----YRAKVL---------QNSKISIKVVP--DVLSFKSLNEKKSFSVT 693 (726)
Q Consensus 644 ~~~~rtv~n~g~~~~t----y~~~~~---------~~~g~~v~v~p--~~l~~~~~g~~~~~~vt 693 (726)
.+++.+|+|+|+.+.. |+.--. ..-|..+.+ | +.+.| ++|+++++++.
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDI-PAGAAVRF-EPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 3578899999998633 332111 112444444 3 35677 88998888763
No 113
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=25.82 E-value=3.3e+02 Score=28.87 Aligned_cols=25 Identities=16% Similarity=-0.008 Sum_probs=14.4
Q ss_pred EEEEEEEEEEcCCCCeeEEEEEecC
Q 041951 643 VVNFPRTVTNVGVANSTYRAKVLQN 667 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~~~~~ 667 (726)
...++.||+|..+.+.+-.+.-..|
T Consensus 243 ~~~~~itv~N~~~~~v~v~v~d~iP 267 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVTVTVEDQIP 267 (317)
T ss_pred EEEEEEEEECCCCCCEEEEEEeCCC
Confidence 3446667778776655544444444
No 114
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=24.25 E-value=4.3e+02 Score=22.20 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=32.0
Q ss_pred EEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEE
Q 041951 644 VNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTV 694 (726)
Q Consensus 644 ~~~~rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~ 694 (726)
..+..+++|.|....++++.-..-.+ -.|.++++ ++|+++++.+.+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~~----~~~~~~~v-~ag~~~~~~w~l 65 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYGG----GGPWTYTV-AAGQTVSLTWPL 65 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcCC----CCCEEEEE-CCCCEEEEEEee
Confidence 36888999999888887776522211 13567788 788887776655
No 115
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.12 E-value=62 Score=30.37 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=25.3
Q ss_pred eeccccchhHHHHHHHHHHHhcCCCCCHHHHH
Q 041951 514 IISGTSMSCPHAAGVAAYVKSFHPDWSPSAIK 545 (726)
Q Consensus 514 ~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik 545 (726)
.+.|=|= |++|.|++|++++.+-..||++|.
T Consensus 73 ~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~ 103 (144)
T COG2166 73 HFFGDSD-ARIVRGLLAILLAAYSGKTAAEIL 103 (144)
T ss_pred EEeccch-hHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3344443 799999999999999999999984
No 116
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=23.20 E-value=72 Score=29.21 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=26.3
Q ss_pred eeccccchhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 041951 514 IISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSA 547 (726)
Q Consensus 514 ~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~ 547 (726)
.+.|.|= |+.|-|++|||.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4556555 67999999999999999999998653
No 117
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.07 E-value=4.9e+02 Score=25.49 Aligned_cols=55 Identities=22% Similarity=0.171 Sum_probs=35.6
Q ss_pred eEEEEEEEEEEcCCCCeeEEEEEec---C-CceEEEEEcCEE---EEeeCCcEEEEEEEEEeec
Q 041951 642 FVVNFPRTVTNVGVANSTYRAKVLQ---N-SKISIKVVPDVL---SFKSLNEKKSFSVTVTGKG 698 (726)
Q Consensus 642 ~~~~~~rtv~n~g~~~~ty~~~~~~---~-~g~~v~v~p~~l---~~~~~g~~~~~~vt~~~~~ 698 (726)
...+++.++.|+|+. .-|.+++.. | +.+++.---.+. ++ ++|+..+..+++++..
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i-~pg~~vsh~~vv~p~~ 99 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERI-PPGENVSHSYVVRPKK 99 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEE-CCCCeEEEEEEEeeee
Confidence 468899999999986 456776654 2 444442111111 23 7898888888888764
No 118
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.05 E-value=62 Score=24.98 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=22.3
Q ss_pred ceeeccccchhHHHHHHHH------HHHhcCCCCCHHHHHHHHH
Q 041951 512 YNIISGTSMSCPHAAGVAA------YVKSFHPDWSPSAIKSAIM 549 (726)
Q Consensus 512 y~~~sGTSmAaP~VAG~aA------Ll~q~~P~ls~~~ik~~L~ 549 (726)
--.+.||=+..=.|....+ -+.+.||.|+.++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3455666666555554432 3456799999999999984
No 119
>PRK13204 ureB urease subunit beta; Reviewed
Probab=22.01 E-value=2e+02 Score=27.23 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=29.3
Q ss_pred EEEEEEEEEcCCCCee----EEEEEe---------cCCceEEEEEc--CEEEEeeCCcEEEEEEE
Q 041951 644 VNFPRTVTNVGVANST----YRAKVL---------QNSKISIKVVP--DVLSFKSLNEKKSFSVT 693 (726)
Q Consensus 644 ~~~~rtv~n~g~~~~t----y~~~~~---------~~~g~~v~v~p--~~l~~~~~g~~~~~~vt 693 (726)
.+++.+|+|.|+.+.. |+.--. ..-|..+.+ | +.+.| ++|+++++++.
T Consensus 43 ~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDI-PANTAVRF-EPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeeEEEEE
Confidence 4578899999998633 332111 112444444 3 35778 88999988763
No 120
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=21.42 E-value=1.1e+02 Score=21.90 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHcc
Q 041951 528 VAAYVKSFHPDWSPSAIKSAIMTT 551 (726)
Q Consensus 528 ~aALl~q~~P~ls~~~ik~~L~~T 551 (726)
.+..|++.+|+++...|+..|...
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHc
Confidence 456788999999999999999854
No 121
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=20.81 E-value=45 Score=15.34 Aligned_cols=6 Identities=50% Similarity=0.867 Sum_probs=3.7
Q ss_pred cccCCC
Q 041951 465 GFSSRG 470 (726)
Q Consensus 465 ~fSS~G 470 (726)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 466665
No 122
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.67 E-value=2.5e+02 Score=29.93 Aligned_cols=73 Identities=25% Similarity=0.362 Sum_probs=48.5
Q ss_pred cCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCC----CcEEEEcccCCCCC---CCcccHHHHHHHHhhhCCcEEEEccC
Q 041951 198 VPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADG----VDVITISIGGDSAV---DFSEDAISIGAFHAMAKGVLTLNSAG 270 (726)
Q Consensus 198 AP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g----~dVInlSlG~~~~~---~~~~~~~~~a~~~a~~~Gv~vV~AAG 270 (726)
.|.+++..|.+.-.+......|++||+.+-+.+ +|||-+-=||.+-. .+.+..+. ....+..+.|+.+-|
T Consensus 39 ~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~va---rai~~~~~PvisaIG 115 (319)
T PF02601_consen 39 NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVA---RAIAASPIPVISAIG 115 (319)
T ss_pred CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHH---HHHHhCCCCEEEecC
Confidence 466666666553222266788999999998765 99999999988421 12222333 233467899999999
Q ss_pred CCC
Q 041951 271 NSG 273 (726)
Q Consensus 271 N~g 273 (726)
=+-
T Consensus 116 He~ 118 (319)
T PF02601_consen 116 HET 118 (319)
T ss_pred CCC
Confidence 663
Done!