BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041953
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 77/167 (46%), Gaps = 1/167 (0%)
Query: 102 TLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNM 161
TL+ + + N +G P N S L L FN LSG IP+++ S L L L L NM
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNM 450
Query: 162 FHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGXX 221
G IP L L+ L L ND +G +P + N T L + L NRL GEIP+ G
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 222 XXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK 268
G IP E G+ L L L+ N G P++++K
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 72/170 (42%), Gaps = 5/170 (2%)
Query: 91 GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLP 150
G IP + L + N LSG PS + S L+ L N L GEIP + +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VK 463
Query: 151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL 210
LE L L N G IPS LSNC L + LS+N +G +PK I L L L L N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 211 QGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDNFLTG 260
G IP E G G IP +G +++ NF+ G
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAG 569
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 97/253 (38%), Gaps = 51/253 (20%)
Query: 65 LTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNT 124
L G IP G IPS + L ++S N+L+G P +
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 125 SSLQYLDFGFNTLSGEIPANI--CSNLPFLEYLALSQNMFHGGIPSAL------------ 170
+L L N+ SG IPA + C +L +L+ L+ N+F+G IP+A+
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLD---LNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 171 --SNCAYLQRLGLSSN--------DFSGVVPKEI--------CNLTK------------- 199
Y++ G+ +F G+ +++ CN+T
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 627
Query: 200 ---LKGLYLGGNRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDN 256
+ L + N L G IP+E G G+IP E G+L GL IL LS N
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 257 FLTGITPSSIYKL 269
L G P ++ L
Sbjct: 688 KLDGRIPQAMSAL 700
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
Query: 65 LTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNT 124
L+GTIP G IP + TL+ + N L+G PS N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
++L ++ N L+GEIP I L L L LS N F G IP+ L +C L L L++N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 185 DFSGVVPKEICNLT-KLKGLYLGGNR 209
F+G +P + + K+ ++ G R
Sbjct: 546 LFNGTIPAAMFKQSGKIAANFIAGKR 571
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
Query: 102 TLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNM 161
TL + N GA P F + S L+ L N SGE+P + + L+ L LS N
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 162 FHGGIPSALSN-CAYLQRLGLSSNDFSGVVPKEICNLTK--LKGLYLGGNRLQGEIPRES 218
F G +P +L+N A L L LSSN+FSG + +C K L+ LYL N G+IP
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 219 GXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDNFLTGITPSSI 266
G IP G+L+ L L+L N L G P +
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 84/207 (40%), Gaps = 30/207 (14%)
Query: 91 GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLP 150
G AI T LK ++ NQ G P SLQYL N +GEIP +
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKE-ICNLTKLKGLYLGGNR 209
L L LS N F+G +P +C+ L+ L LSSN+FSG +P + + + LK L L N
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 210 LQGEIPRE------------------SGXXXXXXXXXXXXXXXQ---------GAIPREW 242
GE+P SG + G IP
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 243 GNLTGLGILQLSDNFLTGITPSSIYKL 269
N + L L LS N+L+G PSS+ L
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSL 438
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 76/213 (35%), Gaps = 29/213 (13%)
Query: 53 HRVTVLNISRLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTT---------YTL 103
+ +L +S + +G IP G+IP+A+F
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 104 KYVSFR----KNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICS------------ 147
+YV + K + GA F + L N LS P NI S
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQL----NRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 148 NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207
N + +L +S NM G IP + + YL L L ND SG +P E+ +L L L L
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 208 NRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPR 240
N+L G IP+ G IP
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 75/175 (42%), Gaps = 31/175 (17%)
Query: 102 TLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPF--LEYLALSQ 159
L+++ N+LSG F + L+ L+ N G IP LP L+YL+L++
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAE 275
Query: 160 NMFHGGIPSALSN-CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES 218
N F G IP LS C L L LS N F G VP + + L+ L L N GE+P ++
Sbjct: 276 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 335
Query: 219 GXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273
+ GL +L LS N +G P S+ L S+
Sbjct: 336 -----------------------LLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 89/247 (36%), Gaps = 64/247 (25%)
Query: 26 PTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLT---GTIPXXXXXXXXXXXX 82
P +W+++ C + GVTC +VT +++S L +
Sbjct: 22 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 83 XXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGA------------------------FP 118
GS+ S + +L + +N LSG FP
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 119 ---SFAFNTSSLQYLDFGFNT---------------------------LSGEIPANICSN 148
S +SL+ LD N+ +SG++ + C N
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
LE+L +S N F GIP L +C+ LQ L +S N SG + I T+LK L + N
Sbjct: 199 ---LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 209 RLQGEIP 215
+ G IP
Sbjct: 255 QFVGPIP 261
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 77/167 (46%), Gaps = 1/167 (0%)
Query: 102 TLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNM 161
TL+ + + N +G P N S L L FN LSG IP+++ S L L L L NM
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNM 453
Query: 162 FHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGXX 221
G IP L L+ L L ND +G +P + N T L + L NRL GEIP+ G
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 222 XXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK 268
G IP E G+ L L L+ N G P++++K
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 72/170 (42%), Gaps = 5/170 (2%)
Query: 91 GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLP 150
G IP + L + N LSG PS + S L+ L N L GEIP + +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VK 466
Query: 151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL 210
LE L L N G IPS LSNC L + LS+N +G +PK I L L L L N
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 211 QGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDNFLTG 260
G IP E G G IP +G +++ NF+ G
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAG 572
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 97/253 (38%), Gaps = 51/253 (20%)
Query: 65 LTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNT 124
L G IP G IPS + L ++S N+L+G P +
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 125 SSLQYLDFGFNTLSGEIPANI--CSNLPFLEYLALSQNMFHGGIPSAL------------ 170
+L L N+ SG IPA + C +L +L+ L+ N+F+G IP+A+
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLD---LNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 171 --SNCAYLQRLGLSSN--------DFSGVVPKEI--------CNLTK------------- 199
Y++ G+ +F G+ +++ CN+T
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630
Query: 200 ---LKGLYLGGNRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDN 256
+ L + N L G IP+E G G+IP E G+L GL IL LS N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 257 FLTGITPSSIYKL 269
L G P ++ L
Sbjct: 691 KLDGRIPQAMSAL 703
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
Query: 65 LTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNT 124
L+GTIP G IP + TL+ + N L+G PS N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
++L ++ N L+GEIP I L L L LS N F G IP+ L +C L L L++N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 185 DFSGVVPKEICNLT-KLKGLYLGGNR 209
F+G +P + + K+ ++ G R
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKR 574
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
Query: 102 TLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNM 161
TL + N GA P F + S L+ L N SGE+P + + L+ L LS N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 162 FHGGIPSALSN-CAYLQRLGLSSNDFSGVVPKEICNLTK--LKGLYLGGNRLQGEIPRES 218
F G +P +L+N A L L LSSN+FSG + +C K L+ LYL N G+IP
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 219 GXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDNFLTGITPSSI 266
G IP G+L+ L L+L N L G P +
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 84/207 (40%), Gaps = 30/207 (14%)
Query: 91 GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLP 150
G AI T LK ++ NQ G P SLQYL N +GEIP +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKE-ICNLTKLKGLYLGGNR 209
L L LS N F+G +P +C+ L+ L LSSN+FSG +P + + + LK L L N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 210 LQGEIPRE------------------SGXXXXXXXXXXXXXXXQ---------GAIPREW 242
GE+P SG + G IP
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 243 GNLTGLGILQLSDNFLTGITPSSIYKL 269
N + L L LS N+L+G PSS+ L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSL 441
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 76/213 (35%), Gaps = 29/213 (13%)
Query: 53 HRVTVLNISRLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTT---------YTL 103
+ +L +S + +G IP G+IP+A+F
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 104 KYVSFR----KNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICS------------ 147
+YV + K + GA F + L N LS P NI S
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQL----NRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 148 NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207
N + +L +S NM G IP + + YL L L ND SG +P E+ +L L L L
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 208 NRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPR 240
N+L G IP+ G IP
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 75/175 (42%), Gaps = 31/175 (17%)
Query: 102 TLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPF--LEYLALSQ 159
L+++ N+LSG F + L+ L+ N G IP LP L+YL+L++
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAE 278
Query: 160 NMFHGGIPSALSN-CAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES 218
N F G IP LS C L L LS N F G VP + + L+ L L N GE+P ++
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 219 GXXXXXXXXXXXXXXXQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273
+ GL +L LS N +G P S+ L S+
Sbjct: 339 -----------------------LLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 89/247 (36%), Gaps = 64/247 (25%)
Query: 26 PTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLT---GTIPXXXXXXXXXXXX 82
P +W+++ C + GVTC +VT +++S L +
Sbjct: 25 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82
Query: 83 XXXXXXXXGSIPSAIFTTYTLKYVSFRKNQLSGA------------------------FP 118
GS+ S + +L + +N LSG FP
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 119 ---SFAFNTSSLQYLDFGFNT---------------------------LSGEIPANICSN 148
S +SL+ LD N+ +SG++ + C N
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
LE+L +S N F GIP L +C+ LQ L +S N SG + I T+LK L + N
Sbjct: 202 ---LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 209 RLQGEIP 215
+ G IP
Sbjct: 258 QFVGPIP 264
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 94/211 (44%), Gaps = 13/211 (6%)
Query: 11 DRDALLALKAHITHDPTNFFAKNWNTSTPVCN--WTGVTCDV--HSHRVTVLNISRLNLT 66
D+ ALL +K + +PT +W +T CN W GV CD ++RV L++S LNL
Sbjct: 7 DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 67 GTIPXXXXXXXXXXXXXXXX---XXXXGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFN 123
P G IP AI L Y+ +SGA P F
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 124 TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYL-QRLGLS 182
+L LDF +N LSG +P +I S+LP L + N G IP + + + L + +S
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 183 SNDFSGVVPKEICNLTKLKGLYLGGNRLQGE 213
N +G +P NL L + L N L+G+
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 190 VPKEICNLTKLKGLYLGG-NRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGNLTGL 248
+P + NL L LY+GG N L G IP GAIP + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 249 GILQLSDNFLTGITPSSIYKL 269
L S N L+G P SI L
Sbjct: 128 VTLDFSYNALSGTLPPSISSL 148
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 103 LKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIP 142
L + R N++ G P L L+ FN L GEIP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 57/159 (35%), Gaps = 4/159 (2%)
Query: 53 HRVTVLNISRLNLTG--TIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYT-LKYVSFR 109
HR+T L + LN T+P ++P +F L +
Sbjct: 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 110 KNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSA 169
+NQL P + + L YL G+N L +P + L L+ L L N A
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
L+ L L +N V +L KLK L L N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211
IPS + A ++L L SN S + K LTKL+ LYL N+LQ
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 119 SFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL-SNCAYLQ 177
+FA+ ++Q L GFN + +P ++ N+P L L L +N +P + N L
Sbjct: 94 AFAY-AHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLT 150
Query: 178 RLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL 210
L +S+N+ + T L+ L L NRL
Sbjct: 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%)
Query: 95 SAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY 154
S + L Y+ AF SSL+ L N+ +I + L L +
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 155 LALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEI 214
L LSQ P+A ++ + LQ L ++SN V LT L+ ++L N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 215 PR 216
PR
Sbjct: 535 PR 536
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 92 SIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNT-SSLQYLDFGFNTLSGEIPANICSNLP 150
+P + T T+ ++ NQL P+ F S L LD GFNT+S P +C LP
Sbjct: 18 QVPDDLPTNITV--LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLP 73
Query: 151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGV 189
L+ L L N + C L L L SN +
Sbjct: 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
S L LD GFNT+S P +C LP L+ L L N + C L L L SN
Sbjct: 54 SQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 112
Query: 185 DFSGV 189
+
Sbjct: 113 SIQKI 117
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
S L LD GFNT+S P +C LP L+ L L N + C L L L SN
Sbjct: 59 SQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 117
Query: 185 DFSGV 189
+
Sbjct: 118 SIQKI 122
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLS 182
N SSL+ LD N+L+ C+ + L LS NM G + L ++ L L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458
Query: 183 SNDFSGVVPKEICNLTKLKGLYLGGNRLQG 212
+N +PK++ +L L+ L + N+L+
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKS 487
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 119 SFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQR 178
+FA+ ++Q L GFN + +P ++ N+P L L L +N N L
Sbjct: 88 AFAY-AHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145
Query: 179 LGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL 210
L +S+N+ + T L+ L L NRL
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 111 NQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
NQL P+ S L LD GFN++S P +C LP L+ L L N
Sbjct: 35 NQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLLKVLNLQHNELSQISDQTF 93
Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL 210
C L L L SN + N L L L N L
Sbjct: 94 VFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
LP LE L L N + LS L L L N S +VP + LTKL+ LYL N
Sbjct: 153 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 208
Query: 209 RL 210
+
Sbjct: 209 HI 210
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
LP LE L L N + LS L L L N S +VP + LTKL+ LYL N
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 209 RL 210
+
Sbjct: 184 HI 185
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
LP LE L L N + LS L L L N S +VP + LTKL+ LYL N
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
Query: 209 RL 210
+
Sbjct: 187 HI 188
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 148 NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207
+LP LE L L N + LS L L L N S +VP + LTKL+ LYL
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 208 NRL 210
N +
Sbjct: 188 NHI 190
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
LP LE L L N + LS L L L N S +VP + LTKL+ LYL N
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 209 RL 210
+
Sbjct: 189 HI 190
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGXXXXXXXXXXXXXXX 234
+L RL L+ N + + P EI NL+ L+ L L NRL +P E G
Sbjct: 248 FLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMV 305
Query: 235 QGAIPREWGNLTGLGIL-----QLSDNFLTGITPSSIYKLLFSIK 274
+P E+GNL L L L FL +T S+ L+F ++
Sbjct: 306 -TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLR 349
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 148 NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207
+LP LE L L N + LS L L L N S +VP + LTKL+ LYL
Sbjct: 129 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184
Query: 208 NRL 210
N +
Sbjct: 185 NHI 187
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 140 EIPANICSNLPF-LEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLT 198
EIP +NLP + + L QN P A S L+R+ LS+N S + P L
Sbjct: 25 EIP----TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 199 KLKGLYLGGNRLQGEIPR 216
L L L GN++ E+P+
Sbjct: 81 SLNSLVLYGNKIT-ELPK 97
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 140 EIPANICSNLPF-LEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLT 198
EIP +NLP + + L QN P A S L+R+ LS+N S + P L
Sbjct: 25 EIP----TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 199 KLKGLYLGGNRLQGEIPR 216
L L L GN++ E+P+
Sbjct: 81 SLNSLVLYGNKIT-ELPK 97
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
LP LE L L N + LS L L L N S +VP + LTKL+ LYL N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 RL 210
+
Sbjct: 207 HI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
LP LE L L N + LS L L L N S +VP + LTKL+ LYL N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 RL 210
+
Sbjct: 207 HI 208
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
LP LE L L N + LS L L L N S +VP + LTKL+ LYL N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 RL 210
+
Sbjct: 207 HI 208
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 111 NQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
NQ++ P N ++L L+ NT+S +I A S L L+ L+ S N P L
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFSSNQVTDLKP--L 169
Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP 215
+N L+RL +SSN S + + LT L+ L N++ P
Sbjct: 170 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
LP L L L +N G P+A +++Q L L N + K L +LK L L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 209 RLQGEIP 215
++ +P
Sbjct: 113 QISCVMP 119
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 103 LKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMF 162
L + ++NQL+G P+ S +Q L G N + EI + L L+ L L N
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI 114
Query: 163 HGGIPSALSNCAYLQRLGLSSNDFS 187
+P + + L L L+SN F+
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 111 NQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
NQ++ P N ++L L+ NT+S +I A S L L+ L+ S N P L
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFSSNQVTDLKP--L 169
Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP 215
+N L+RL +SSN S + + LT L+ L N++ P
Sbjct: 170 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
LP LE L L N + LS L L L N +VP + LTKL+ LYL N
Sbjct: 131 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKN 186
Query: 209 RL 210
+
Sbjct: 187 HI 188
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 111 NQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL 170
NQ++ P N ++L L+ NT+S +I A S L L+ L S N P L
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLNFSSNQVTDLKP--L 169
Query: 171 SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP 215
+N L+RL +SSN S + + LT L+ L N++ P
Sbjct: 170 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 150 PFLEYLALSQNMFHGGIPSAL-----SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLY 204
P LE L L +NM + L ++LQ L L+ N + + P +LT L+GL
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 205 LGGNRL 210
L NRL
Sbjct: 511 LNSNRL 516
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 163 HGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGXXX 222
H +P+ + A Q L L N + + P +L LK LYLG N+L
Sbjct: 31 HASVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL------------ 76
Query: 223 XXXXXXXXXXXXQGAIPR-EWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274
GA+P + +LT L +L L N LT + PS+++ L +K
Sbjct: 77 -------------GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLK 115
>pdb|3G7K|A Chain A, Crystal Structure Of Methylitaconate-Delta-Isomerase
pdb|3G7K|B Chain B, Crystal Structure Of Methylitaconate-Delta-Isomerase
pdb|3G7K|C Chain C, Crystal Structure Of Methylitaconate-Delta-Isomerase
pdb|3G7K|D Chain D, Crystal Structure Of Methylitaconate-Delta-Isomerase
Length = 391
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 111 NQLSGAFPSFAFNTSSLQYLDFGF-NTLSGEIPANICSNLPFLEYL 155
++ S AFP AF T Y+DF NT+SG+ ++ S L F++ L
Sbjct: 255 SEKSPAFPMIAFVTKPEDYVDFSTGNTISGD-DVDLVSRLMFMQVL 299
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 102 TLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNM 161
+L Y + NQ++ P N + L L G N ++ P +NL L +L + N
Sbjct: 200 SLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ 254
Query: 162 FHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGE 213
+A+ + L+ L + SN S + + NL++L L+L N+L E
Sbjct: 255 ISD--INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 32/152 (21%)
Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
++L+YL+ N ++ P SNL L L + N SAL N L+ L L+ +
Sbjct: 66 TNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 185 DFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGXXXXXXXXXXXXXXXQGAIPREWGN 244
+ S + P + NLTK L LG N ++ N
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDL-------------------------SPLSN 153
Query: 245 LTGLGILQLSDNFLTGITPSSIYKLLFSIKFG 276
TGL L ++++ + +TP + L+S+
Sbjct: 154 XTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 166 IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR 216
+P LSN +L + LS+N S + + N+T+L L L NRL+ PR
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 111 NQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH 163
NQL G P+F + L L+ +N ++ EIPAN C +E L+ + N
Sbjct: 340 NQLEGKLPAFG-SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS 187
+ LD G N + + + ++ P LE L L++N+ P A +N L+ LGL SN
Sbjct: 35 RLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 188 GV---VPKEICNLTKL 200
+ V + NLTKL
Sbjct: 94 LIPLGVFTGLSNLTKL 109
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 10/127 (7%)
Query: 91 GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLP 150
+PS + TLK + N+ A N SL +L NT E+ NL
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 151 FLEYLALSQNMFHGGIPSA------LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLY 204
L L LS H I ++ L N ++LQ L LS N+ + + +L+ L
Sbjct: 351 NLRELDLS----HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 205 LGGNRLQ 211
L RL+
Sbjct: 407 LAFTRLK 413
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 92 SIPSAIFTTYT-LKYVSFRKNQLSGAFPSFAFN-TSSLQYLDFGFNTLSGEIPANICSNL 149
++ + +F T L + NQL+ + P F+ + L L G N L +P+ + L
Sbjct: 73 TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRL 130
Query: 150 PFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNR 209
L+ L L+ N A LQ L LS+N V L KL+ + L GN+
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
L L +L L N + L LGL++N + + +LT+L LYLGGN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 209 RLQ 211
+L+
Sbjct: 118 QLK 120
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 92 SIPSAIFTTYT-LKYVSFRKNQLSGAFPSFAFN-TSSLQYLDFGFNTLSGEIPANICSNL 149
++ + +F T L + NQL+ + P F+ + L L G N L +P+ + L
Sbjct: 73 TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRL 130
Query: 150 PFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNR 209
L+ L L+ N A LQ L LS+N V L KL+ + L GN+
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 149 LPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
L L +L L N + L LGL++N + + +LT+L LYLGGN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 209 RLQ 211
+L+
Sbjct: 118 QLK 120
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%)
Query: 95 SAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY 154
S + L Y+ AF SSL+ L N+ +I + L L +
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 155 LALSQNMFHGGIPSALSNCAYLQRLGLSSNDF 186
L LSQ P+A ++ + LQ L +S N+F
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%)
Query: 95 SAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY 154
S + L Y+ AF SSL+ L N+ +I + L L +
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 155 LALSQNMFHGGIPSALSNCAYLQRLGLSSNDF 186
L LSQ P+A ++ + LQ L +S N+F
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 101 YTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN 160
+ LK F +L+ + + +L +L+ N E+P+++ +L LE + N
Sbjct: 123 HGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANI--EEMPSHLFDDLENLESIEFGSN 180
Query: 161 MFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR 216
L++L L+SN V LT L+ ++L N PR
Sbjct: 181 KLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%)
Query: 95 SAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY 154
S + L Y+ AF SSL+ L N+ +I + L L +
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 155 LALSQNMFHGGIPSALSNCAYLQRLGLSSNDF 186
L LSQ P+A ++ + LQ L +S N+F
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 92 SIPSAIFTTYT-LKYVSFRKNQLS--GAFPSFAFNTSSLQYLDFGFN 135
S+P +F T L +S N LS G F T+SL+YLD FN
Sbjct: 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 127 LQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDF 186
+Q D G + ++P P L L N N L L L +N
Sbjct: 36 VQCSDLGLEKVPKDLP-------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 187 SGVVPKEICNLTKLKGLYLGGNRLQGEIPRE 217
S + P L KL+ LYL N+L+ E+P +
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLK-ELPEK 118
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
++L L FN++S + +N P L L L+ N +P L++ Y+Q + L +N
Sbjct: 216 NNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNN 273
Query: 185 DFSGVVPKEIC 195
+ S + + C
Sbjct: 274 NISAIGSNDFC 284
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 127 LQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDF 186
+Q D G + ++P P L L N N L L L +N
Sbjct: 36 VQCSDLGLEKVPKDLP-------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 187 SGVVPKEICNLTKLKGLYLGGNRLQGEIPRE 217
S + P L KL+ LYL N+L+ E+P +
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLK-ELPEK 118
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184
++L L FN++S + +N P L L L+ N +P L++ Y+Q + L +N
Sbjct: 216 NNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNN 273
Query: 185 DFSGVVPKEIC 195
+ S + + C
Sbjct: 274 NISAIGSNDFC 284
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 165 GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
G+PS + L++L LS N F + N L LY+ GN
Sbjct: 289 GLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 164 GGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208
G+PS + L++L L++N F + + L+ LY+ GN
Sbjct: 290 NGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQ---------NMFHGGIPSALSNCAY 175
+ + Y+D N+++ E+ S L L++L + Q N F G + Y
Sbjct: 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 176 LQRLGLSSNDFSGVVPKEICNLTK--LKGLYLGGN 208
Q L L + F+G+ E+ LT+ L G L GN
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN 123
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQ---------NMFHGGIPSALSNCAY 175
+ + Y+D N+++ E+ S L L++L + Q N F G + Y
Sbjct: 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 176 LQRLGLSSNDFSGVVPKEICNLTK--LKGLYLGGN 208
Q L L + F+G+ E+ LT+ L G L GN
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,202,526
Number of Sequences: 62578
Number of extensions: 262641
Number of successful extensions: 649
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 147
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)