Query 041953
Match_columns 279
No_of_seqs 212 out of 3376
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.6E-33 1.9E-37 263.4 20.2 257 7-269 26-283 (968)
2 PLN00113 leucine-rich repeat r 99.9 7.1E-27 1.5E-31 223.0 14.7 217 52-269 139-355 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.2E-25 9.1E-30 187.6 4.5 220 53-273 125-344 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.2E-25 4.7E-30 189.3 1.8 222 52-275 196-444 (873)
5 KOG0444 Cytoskeletal regulator 99.8 8E-23 1.7E-27 175.5 -4.7 217 52-275 54-296 (1255)
6 KOG4237 Extracellular matrix p 99.8 7.8E-21 1.7E-25 154.8 -2.8 219 52-271 66-347 (498)
7 KOG0444 Cytoskeletal regulator 99.8 6E-21 1.3E-25 164.1 -4.1 216 52-275 102-344 (1255)
8 KOG0617 Ras suppressor protein 99.7 2.8E-20 6.1E-25 135.7 -4.7 185 75-266 31-219 (264)
9 KOG4237 Extracellular matrix p 99.7 3.4E-20 7.3E-25 151.2 -5.6 208 51-259 89-359 (498)
10 KOG0617 Ras suppressor protein 99.7 1.6E-20 3.4E-25 137.0 -7.0 163 51-220 31-194 (264)
11 KOG0472 Leucine-rich repeat pr 99.7 9.2E-21 2E-25 154.9 -9.5 212 51-274 66-301 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 1.3E-20 2.9E-25 153.9 -9.0 199 54-263 115-314 (565)
13 PLN03210 Resistant to P. syrin 99.7 6.7E-16 1.5E-20 149.1 16.1 94 175-270 779-893 (1153)
14 PRK15370 E3 ubiquitin-protein 99.7 2.5E-15 5.5E-20 137.2 16.8 187 54-263 179-384 (754)
15 PRK15370 E3 ubiquitin-protein 99.7 4.5E-16 9.7E-21 142.1 10.6 191 53-268 199-409 (754)
16 PLN03210 Resistant to P. syrin 99.7 4.3E-15 9.3E-20 143.6 18.0 194 54-256 612-835 (1153)
17 KOG0618 Serine/threonine phosp 99.6 4E-18 8.7E-23 152.1 -4.0 200 53-258 241-488 (1081)
18 PRK15387 E3 ubiquitin-protein 99.6 1.2E-15 2.7E-20 138.8 10.5 194 52-269 241-468 (788)
19 cd00116 LRR_RI Leucine-rich re 99.6 1.8E-17 4E-22 139.3 -1.5 214 53-266 51-298 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 3.2E-17 7E-22 137.8 -1.7 208 51-258 79-319 (319)
21 PLN03150 hypothetical protein; 99.6 1.2E-14 2.5E-19 131.9 12.8 153 4-162 366-527 (623)
22 KOG0618 Serine/threonine phosp 99.6 6.6E-17 1.4E-21 144.5 -4.4 183 69-256 302-510 (1081)
23 PRK15387 E3 ubiquitin-protein 99.6 2.8E-14 6E-19 130.1 12.3 192 54-273 223-448 (788)
24 COG4886 Leucine-rich repeat (L 99.4 2.7E-13 5.8E-18 117.4 6.4 201 57-267 97-298 (394)
25 KOG0532 Leucine-rich repeat (L 99.4 5.4E-15 1.2E-19 126.2 -4.1 175 77-261 75-249 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 2.1E-14 4.6E-19 122.7 -5.5 192 54-256 76-270 (722)
27 COG4886 Leucine-rich repeat (L 99.3 4E-12 8.7E-17 110.1 6.2 178 53-239 116-294 (394)
28 KOG3207 Beta-tubulin folding c 99.3 2.1E-13 4.6E-18 113.2 -1.7 212 51-262 119-342 (505)
29 KOG1259 Nischarin, modulator o 99.3 7.7E-13 1.7E-17 105.3 0.9 203 53-263 182-416 (490)
30 KOG3207 Beta-tubulin folding c 99.2 8.3E-13 1.8E-17 109.7 -0.5 186 75-261 119-316 (505)
31 KOG1909 Ran GTPase-activating 99.2 1.4E-12 3.1E-17 105.4 -0.5 185 74-259 89-311 (382)
32 PF14580 LRR_9: Leucine-rich r 99.2 1.8E-11 3.9E-16 92.5 4.2 108 75-187 17-126 (175)
33 PLN03150 hypothetical protein; 99.1 1E-10 2.3E-15 106.4 7.4 107 152-258 420-527 (623)
34 PF14580 LRR_9: Leucine-rich r 99.1 9.9E-11 2.1E-15 88.5 3.9 127 123-254 17-148 (175)
35 PF13855 LRR_8: Leucine rich r 99.0 2.3E-10 5.1E-15 71.3 3.9 61 198-258 1-61 (61)
36 KOG1259 Nischarin, modulator o 99.0 2.9E-11 6.4E-16 96.4 -1.1 127 77-210 284-411 (490)
37 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.8E-14 67.9 4.4 61 174-234 1-61 (61)
38 KOG1909 Ran GTPase-activating 98.9 8.2E-11 1.8E-15 95.4 -1.5 183 52-234 91-310 (382)
39 KOG0531 Protein phosphatase 1, 98.8 2.4E-10 5.2E-15 99.5 -2.8 57 200-259 234-290 (414)
40 KOG0531 Protein phosphatase 1, 98.7 2.2E-09 4.7E-14 93.5 -0.2 202 53-263 95-322 (414)
41 KOG1859 Leucine-rich repeat pr 98.7 1.6E-10 3.4E-15 102.1 -7.5 179 70-259 102-292 (1096)
42 KOG2120 SCF ubiquitin ligase, 98.7 1.7E-10 3.8E-15 91.9 -7.2 177 78-256 186-373 (419)
43 KOG4658 Apoptotic ATPase [Sign 98.7 1.8E-08 3.8E-13 94.4 3.9 127 54-184 524-652 (889)
44 KOG2120 SCF ubiquitin ligase, 98.7 1.3E-10 2.7E-15 92.6 -8.7 219 53-276 185-414 (419)
45 KOG4658 Apoptotic ATPase [Sign 98.6 1.7E-08 3.7E-13 94.4 3.4 110 50-161 542-653 (889)
46 COG5238 RNA1 Ran GTPase-activa 98.5 3.3E-08 7.2E-13 78.1 1.0 206 53-260 30-286 (388)
47 PF08263 LRRNT_2: Leucine rich 98.5 1.6E-07 3.5E-12 53.7 3.3 40 9-49 2-43 (43)
48 KOG2982 Uncharacterized conser 98.5 2.2E-08 4.7E-13 80.1 -0.7 207 55-261 47-264 (418)
49 PF12799 LRR_4: Leucine Rich r 98.3 6.4E-07 1.4E-11 51.3 3.0 40 222-262 1-40 (44)
50 KOG4579 Leucine-rich repeat (L 98.2 2.4E-08 5.2E-13 70.9 -4.8 84 125-211 53-136 (177)
51 KOG1859 Leucine-rich repeat pr 98.2 7.8E-09 1.7E-13 91.7 -9.1 127 78-211 165-292 (1096)
52 KOG2982 Uncharacterized conser 98.2 2.5E-07 5.4E-12 74.2 -0.4 201 51-252 69-285 (418)
53 PF13306 LRR_5: Leucine rich r 98.2 9.4E-06 2E-10 58.6 7.2 122 120-248 7-128 (129)
54 PRK15386 type III secretion pr 98.1 1.6E-05 3.5E-10 67.8 8.8 53 53-111 52-104 (426)
55 KOG1644 U2-associated snRNP A' 98.1 6.9E-06 1.5E-10 62.4 5.9 82 78-163 43-126 (233)
56 KOG1644 U2-associated snRNP A' 98.1 9.7E-06 2.1E-10 61.6 6.3 128 79-210 21-152 (233)
57 PF13306 LRR_5: Leucine rich r 98.1 3.2E-05 6.9E-10 55.8 8.3 124 142-271 4-127 (129)
58 KOG4579 Leucine-rich repeat (L 98.0 2.8E-07 6E-12 65.6 -2.7 82 78-163 54-136 (177)
59 COG5238 RNA1 Ran GTPase-activa 98.0 1.2E-06 2.6E-11 69.5 0.5 210 51-261 56-318 (388)
60 PF12799 LRR_4: Leucine Rich r 97.9 8E-06 1.7E-10 46.8 2.7 34 79-113 3-36 (44)
61 PRK15386 type III secretion pr 97.8 0.00017 3.7E-09 61.7 9.0 138 73-233 48-188 (426)
62 KOG3665 ZYG-1-like serine/thre 97.8 9.6E-06 2.1E-10 74.5 1.4 180 54-236 61-264 (699)
63 KOG3665 ZYG-1-like serine/thre 97.7 6.4E-06 1.4E-10 75.6 -1.1 141 125-267 122-271 (699)
64 KOG2739 Leucine-rich acidic nu 97.3 9.9E-05 2.2E-09 58.4 1.5 104 53-158 43-151 (260)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00022 4.7E-09 56.5 1.4 109 69-181 35-150 (260)
66 KOG2123 Uncharacterized conser 96.6 5.5E-05 1.2E-09 60.5 -5.2 81 102-187 20-101 (388)
67 KOG2123 Uncharacterized conser 96.6 4.8E-05 1E-09 60.8 -5.7 101 52-156 18-123 (388)
68 KOG1947 Leucine rich repeat pr 96.2 0.00034 7.4E-09 62.1 -3.6 38 124-161 268-306 (482)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0042 9.2E-08 29.5 0.8 12 248-259 2-13 (22)
70 PF00560 LRR_1: Leucine Rich R 95.5 0.0055 1.2E-07 29.1 0.6 19 224-243 2-20 (22)
71 KOG1947 Leucine rich repeat pr 95.3 0.00077 1.7E-08 59.9 -5.0 111 76-186 187-307 (482)
72 PF13504 LRR_7: Leucine rich r 93.9 0.039 8.5E-07 24.3 1.3 13 223-235 2-14 (17)
73 KOG3864 Uncharacterized conser 93.7 0.0069 1.5E-07 46.4 -2.2 79 176-254 103-184 (221)
74 smart00370 LRR Leucine-rich re 93.4 0.064 1.4E-06 26.4 1.7 21 246-266 2-22 (26)
75 smart00369 LRR_TYP Leucine-ric 93.4 0.064 1.4E-06 26.4 1.7 21 246-266 2-22 (26)
76 PF13516 LRR_6: Leucine Rich r 93.2 0.024 5.2E-07 27.5 -0.1 21 246-266 2-22 (24)
77 KOG3864 Uncharacterized conser 92.9 0.011 2.5E-07 45.3 -2.2 81 54-134 102-185 (221)
78 KOG4308 LRR-containing protein 92.9 0.00015 3.2E-09 64.0 -14.3 181 55-235 89-303 (478)
79 smart00370 LRR Leucine-rich re 92.4 0.11 2.5E-06 25.5 1.8 21 125-146 2-22 (26)
80 smart00369 LRR_TYP Leucine-ric 92.4 0.11 2.5E-06 25.5 1.8 21 125-146 2-22 (26)
81 KOG4308 LRR-containing protein 91.8 0.00037 7.9E-09 61.5 -13.2 183 79-262 89-306 (478)
82 KOG4341 F-box protein containi 88.5 0.43 9.4E-06 41.0 2.9 134 52-185 293-437 (483)
83 KOG0473 Leucine-rich repeat pr 88.4 0.0094 2E-07 46.9 -6.4 85 52-139 41-125 (326)
84 KOG0473 Leucine-rich repeat pr 87.6 0.0071 1.5E-07 47.5 -7.4 85 147-234 39-123 (326)
85 KOG4341 F-box protein containi 87.4 0.19 4.1E-06 43.1 0.2 159 99-257 266-437 (483)
86 smart00365 LRR_SD22 Leucine-ri 81.2 1.4 3E-05 21.8 1.6 16 246-261 2-17 (26)
87 smart00368 LRR_RI Leucine rich 77.6 0.89 1.9E-05 22.8 0.3 15 247-261 3-17 (28)
88 smart00364 LRR_BAC Leucine-ric 76.9 1.9 4E-05 21.3 1.3 17 222-239 2-18 (26)
89 KOG3763 mRNA export factor TAP 66.0 3 6.5E-05 37.3 1.1 64 75-138 216-283 (585)
90 KOG3763 mRNA export factor TAP 54.7 5.9 0.00013 35.6 1.0 62 173-236 217-284 (585)
91 smart00367 LRR_CC Leucine-rich 54.0 9.1 0.0002 18.5 1.2 11 101-111 2-12 (26)
92 KOG4242 Predicted myosin-I-bin 34.5 1.4E+02 0.003 26.9 6.0 61 53-113 214-280 (553)
93 TIGR00864 PCC polycystin catio 25.9 46 0.00099 36.4 2.1 33 107-139 1-33 (2740)
94 TIGR00864 PCC polycystin catio 23.8 50 0.0011 36.2 1.9 32 59-90 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.6e-33 Score=263.39 Aligned_cols=257 Identities=41% Similarity=0.701 Sum_probs=167.5
Q ss_pred CChhHHHHHHHHHHhccCCCcccccCCCCCCCCCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccC
Q 041953 7 TITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSC 86 (279)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 86 (279)
..++|..+|++||+.+. +|..+. .+|+...++|.|.|+.|.. ..+++.|+++++.+.+..+..|..+++|+.|++++
T Consensus 26 ~~~~~~~~l~~~~~~~~-~~~~~~-~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 26 LHAEELELLLSFKSSIN-DPLKYL-SNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred CCHHHHHHHHHHHHhCC-CCcccC-CCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 35689999999999986 777777 8998888999999999985 35899999999999888888999999999999999
Q ss_pred CcccCCCCcccc-CCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeeccccccc
Q 041953 87 NRLSGSIPSAIF-TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG 165 (279)
Q Consensus 87 ~~i~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 165 (279)
|.+.+.+|..+. .+.+|++|++++|.+.+.+|. ..+++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+.
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCccccc
Confidence 999877776654 778888888888877654443 234556666666665554444443 4555555555555555545
Q ss_pred CCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCC
Q 041953 166 IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNL 245 (279)
Q Consensus 166 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 245 (279)
.|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+..|..+.++
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 55555555555555555555554445445555555555555555444444444444555555555554444444444444
Q ss_pred CCCCeEEccCCcccccCccccccc
Q 041953 246 TGLGILQLSDNFLTGITPSSIYKL 269 (279)
Q Consensus 246 ~~L~~L~l~~n~l~~~~~~~~~~~ 269 (279)
++|+.|++++|.+.+..|.++..+
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l 283 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSL 283 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhc
Confidence 444444444444444444444333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=7.1e-27 Score=222.96 Aligned_cols=217 Identities=38% Similarity=0.550 Sum_probs=126.7
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
.+++++|++++|.+.+..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 34556666666666555666666666666666666666656666666666666666666666655666666666666666
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+++|.+.+.+|..+ .++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 66666654455444 55666666666666655555555555556666666666555555555555555555555555555
Q ss_pred cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccc
Q 041953 212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269 (279)
Q Consensus 212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 269 (279)
+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 5555555555555555555555554555555555555555555555555444444443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=4.2e-25 Score=187.58 Aligned_cols=220 Identities=25% Similarity=0.238 Sum_probs=189.4
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
.+++.|+|.+|.|+.+....++.++.|+.||++.|.|+.....+|..-.++++|+|++|+|+......|..+.+|..|.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 35788888888887777777888888888999988888555566777778999999999998777778888889999999
Q ss_pred eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG 212 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 212 (279)
+.|+++ .+|...|..+++|+.|++..|.+...--..|..+++|+.|.+..|.+.......|..+.++++|++..|+++.
T Consensus 205 srNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 205 SRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred ccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 999998 9999998899999999999998874334578888999999999999987777788889999999999999987
Q ss_pred ccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953 213 EIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 213 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
.-..++.++..|++|++++|.|..+.++++..+++|++|++++|.+++..+.+|..+..+.
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 7788899999999999999999988899999999999999999999999998888776554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.2e-25 Score=189.32 Aligned_cols=222 Identities=23% Similarity=0.244 Sum_probs=155.5
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
...+..|.|+.|.++...+..|+++++|+.|++..|.|.....-.|.++++|+.|.+.+|.+.......|..+.++++|+
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 33555555555555544455555556666666665555422233455555566666666665544556677788888888
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccc-
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL- 210 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~- 210 (279)
+..|++. .+......++..|+.|+++.|.|....++.|..+++|++|++++|.++...+..|..+..|++|+++.|++
T Consensus 276 L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 276 LETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred cccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 8888887 55555556788888888888888878888888888999999999888866665555555555555555544
Q ss_pred -----------------------cccc---CccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcc
Q 041953 211 -----------------------QGEI---PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPS 264 (279)
Q Consensus 211 -----------------------~~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 264 (279)
...+ ...|.++++|+.|++.+|++..+...+|.+++.|+.|++.+|++.++-|.
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 3222 23466788899999999999866667899999999999999999999999
Q ss_pred ccccccccccc
Q 041953 265 SIYKLLFSIKF 275 (279)
Q Consensus 265 ~~~~~~~~~~~ 275 (279)
+|..+ .++++
T Consensus 435 AFe~m-~Lk~L 444 (873)
T KOG4194|consen 435 AFEPM-ELKEL 444 (873)
T ss_pred ccccc-hhhhh
Confidence 98887 55543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=8e-23 Score=175.48 Aligned_cols=217 Identities=27% Similarity=0.405 Sum_probs=149.6
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCccc-CCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLS-GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 130 (279)
+.+++.|.+++|++. .+-+.++.++.|+.+.++.|.+. .-+|..+..+..|+.|++++|++. ..|..+..-.++-.|
T Consensus 54 lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVL 131 (1255)
T ss_pred HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEE
Confidence 456777777777766 34555667777777777777665 236667777778888888888877 667777777778888
Q ss_pred EeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc-----------------------
Q 041953 131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS----------------------- 187 (279)
Q Consensus 131 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~----------------------- 187 (279)
++++|++. .+|..+|.++.-|-.|++++|.+. .+|..++++..|++|.+++|.+.
T Consensus 132 NLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 132 NLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 88888886 788777777777777777777776 56666666666666666666532
Q ss_pred --ccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccc
Q 041953 188 --GVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSS 265 (279)
Q Consensus 188 --~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 265 (279)
..+|.++..+.+|..++++.|.+. .+|..+..+++|+.|+||+|+|+ .+....+...+|++|+++.|.++.. |.+
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~L-P~a 286 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVL-PDA 286 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccc-hHH
Confidence 124555555666667777777765 66777777777777777777776 4444455556677777777777665 566
Q ss_pred cccccccccc
Q 041953 266 IYKLLFSIKF 275 (279)
Q Consensus 266 ~~~~~~~~~~ 275 (279)
++.++.+.|+
T Consensus 287 vcKL~kL~kL 296 (1255)
T KOG0444|consen 287 VCKLTKLTKL 296 (1255)
T ss_pred HhhhHHHHHH
Confidence 6666665543
No 6
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=7.8e-21 Score=154.81 Aligned_cols=219 Identities=24% Similarity=0.286 Sum_probs=146.7
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEccc-CcccccCCccCCCCCCCcEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK-NQLSGAFPSFAFNTSSLQYL 130 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L 130 (279)
+...+.|+|..|+|+.+.+.+|+.+++|+.|+++.|.|+.+.|++|.++.+|..|.+.+ |+|+..-...|..+.+++.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999988887777 88884434456666666666
Q ss_pred EeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcc------------------------
Q 041953 131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDF------------------------ 186 (279)
Q Consensus 131 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~------------------------ 186 (279)
.+.-|++. .+....|..++.+..|.+..|.+.......+..+..++.+.+..|.+
T Consensus 146 llNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 66666665 55555555555555555555544311111233333333332222220
Q ss_pred -------------------------------------cccCC-cccCCCCCccEEEccCcccccccCccCCCCCCCCEEe
Q 041953 187 -------------------------------------SGVVP-KEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMS 228 (279)
Q Consensus 187 -------------------------------------~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 228 (279)
....| ..|+.+++|+++++++|.++.+-+.+|.+...++.|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 00111 2355666777777777777766666777777777777
Q ss_pred ccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccc
Q 041953 229 LSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLF 271 (279)
Q Consensus 229 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 271 (279)
|..|++.......|.++..|+.|++.+|+|+...|.+|..+.+
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 7777776555556777777777777777777777766665533
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=6e-21 Score=164.06 Aligned_cols=216 Identities=26% Similarity=0.386 Sum_probs=120.9
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCc-cccCCCCCcEEEcccCcccccCCccCCCCCCCcEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPS-AIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 130 (279)
+..++.|||++|++. ..|..+...+++-.|++++|.|. .+|. .|-++.-|-+|++++|++. .+|+.+..+..|++|
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 446777777777776 56666666677777777777776 4454 3345666777777777776 666666677777777
Q ss_pred Eeecccccc-------------------------ccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCc
Q 041953 131 DFGFNTLSG-------------------------EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSND 185 (279)
Q Consensus 131 ~l~~n~~~~-------------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 185 (279)
.+++|++.- .+|..+ ..+.+|..++++.|.+. ..|+++..+++|+.|++++|.
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc
Confidence 777776531 122222 23344444444444444 444444444455555555554
Q ss_pred ccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcc-cCCccccCCCCCCeEEccCCcccccCcc
Q 041953 186 FSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQG-AIPREWGNLTGLGILQLSDNFLTGITPS 264 (279)
Q Consensus 186 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 264 (279)
++ ...-....+.+|++|+++.|.++ .+|+.+..+++|+.|.+.+|++.- -+|..++++..|+++...+|.+. ..|+
T Consensus 257 it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPE 333 (1255)
T KOG0444|consen 257 IT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPE 333 (1255)
T ss_pred ee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCch
Confidence 44 22222333444555555555544 455555555555555555555431 23445555555565655555543 3366
Q ss_pred ccccccccccc
Q 041953 265 SIYKLLFSIKF 275 (279)
Q Consensus 265 ~~~~~~~~~~~ 275 (279)
.++.|..++|+
T Consensus 334 glcRC~kL~kL 344 (1255)
T KOG0444|consen 334 GLCRCVKLQKL 344 (1255)
T ss_pred hhhhhHHHHHh
Confidence 77777666554
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=2.8e-20 Score=135.68 Aligned_cols=185 Identities=28% Similarity=0.487 Sum_probs=148.5
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcE
Q 041953 75 NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY 154 (279)
Q Consensus 75 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 154 (279)
++.+++.|.+++|+++ ..|..+..+.+|+.|++.+|++. .+|..+..+++|+.|+++.|++. .+|..+ +.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhhh
Confidence 5678888999999998 77778888999999999999988 77888889999999999999886 777666 88999999
Q ss_pred EEeecccccc-cCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCc
Q 041953 155 LALSQNMFHG-GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233 (279)
Q Consensus 155 L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 233 (279)
||+.+|.+.. .+|..|-.+..|+.|.+++|.+. ..|...+.+++|+.|.+.+|.+. .+|..++.+..|+.|++.+|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 9998887753 57777778888889999999887 67777888899999999998876 788888888999999999999
Q ss_pred CcccCCccccCCC---CCCeEEccCCcccccCcccc
Q 041953 234 LQGAIPREWGNLT---GLGILQLSDNFLTGITPSSI 266 (279)
Q Consensus 234 i~~~~~~~~~~~~---~L~~L~l~~n~l~~~~~~~~ 266 (279)
++ .+|..++.+. +=+.+.+..|+....+.++|
T Consensus 185 l~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 185 LT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred ee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 87 4554555432 33456667777655555443
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=3.4e-20 Score=151.16 Aligned_cols=208 Identities=24% Similarity=0.266 Sum_probs=171.7
Q ss_pred CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccC-CcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953 51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSC-NRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 129 (279)
..++|+.|+|++|+|+.+-|++|..++.|.+|-+.+ |+|.+.-.+.|.++..|+.|.+.-|++.-.....+..++++..
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 467999999999999999999999999998888877 8998666678888888888888888777555667777888888
Q ss_pred EEeeccccccccChhhhcCCCCCcEEEeeccc------------------------------------------------
Q 041953 130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNM------------------------------------------------ 161 (279)
Q Consensus 130 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~------------------------------------------------ 161 (279)
|.+..|.+. .++...|..+..++.+.+..|.
T Consensus 169 LslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~ 247 (498)
T KOG4237|consen 169 LSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS 247 (498)
T ss_pred hcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence 888888776 6666555666666655554442
Q ss_pred -------------ccccCC-ccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEE
Q 041953 162 -------------FHGGIP-SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELM 227 (279)
Q Consensus 162 -------------l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 227 (279)
..+..| ..|..+++|++|++++|++++.-+.+|..+..+++|++..|++..+....|.++..|+.|
T Consensus 248 ~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL 327 (498)
T KOG4237|consen 248 LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTL 327 (498)
T ss_pred HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceee
Confidence 001111 246778899999999999999999999999999999999999987777889999999999
Q ss_pred eccCCcCcccCCccccCCCCCCeEEccCCccc
Q 041953 228 SLSENELQGAIPREWGNLTGLGILQLSDNFLT 259 (279)
Q Consensus 228 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~ 259 (279)
+|.+|+|+...|.+|..+..|.+|.+-.|++.
T Consensus 328 ~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 328 SLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999999899999999999999999999874
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=1.6e-20 Score=137.00 Aligned_cols=163 Identities=33% Similarity=0.505 Sum_probs=130.9
Q ss_pred CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEE
Q 041953 51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 130 (279)
..+.++.|.+++|.++ ..|+.++.+.+|+.|++.+|++. ..|..+..+++|+.|++.-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3457788888888887 66777888888888888888887 78888888888888888888877 778888888888888
Q ss_pred Eeecccccc-ccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcc
Q 041953 131 DFGFNTLSG-EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNR 209 (279)
Q Consensus 131 ~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 209 (279)
++.+|.+.. .+|..+| .+..|+.|+++.|.+. .+|..++.+++|+.|.+..|.+. ..|..++.+.+|++|.+++|+
T Consensus 108 dltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 888887763 4555553 4777888888888887 77878888888888888888877 678888888888888888888
Q ss_pred cccccCccCCC
Q 041953 210 LQGEIPRESGN 220 (279)
Q Consensus 210 ~~~~~~~~~~~ 220 (279)
++ .+|..++.
T Consensus 185 l~-vlppel~~ 194 (264)
T KOG0617|consen 185 LT-VLPPELAN 194 (264)
T ss_pred ee-ecChhhhh
Confidence 87 66655544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=9.2e-21 Score=154.85 Aligned_cols=212 Identities=30% Similarity=0.421 Sum_probs=130.1
Q ss_pred CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE-
Q 041953 51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY- 129 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~- 129 (279)
...-++++.+.+|.+. ..|.+++.+..++.++.+.|++. .+|.....+.+|..++.++|.+. ..++.++.+..+..
T Consensus 66 nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDL 142 (565)
T ss_pred cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhh
Confidence 3445778888888776 45666666666666666666666 56666666666666666666554 33444444444444
Q ss_pred ----------------------EEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc
Q 041953 130 ----------------------LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS 187 (279)
Q Consensus 130 ----------------------L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (279)
+++.+|.+. .+|+... .++.|+++++..|.+. .+|..++.+.+|..|++..|++.
T Consensus 143 ~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 143 DATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hccccccccCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence 444444443 3444332 2566666666666655 66666666667777777777666
Q ss_pred ccCCcccCCCCCccEEEccCcccccccCcc-CCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccc
Q 041953 188 GVVPKEICNLTKLKGLYLGGNRLQGEIPRE-SGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSI 266 (279)
Q Consensus 188 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 266 (279)
..| .|.++..|.++++..|.+. .+|.. ..+++++..||+.+|+++ ..|..+.-+.+|..||+++|.+++. |.++
T Consensus 220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p~sL 294 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-PYSL 294 (565)
T ss_pred -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-Cccc
Confidence 344 5566666666666666665 34433 336677777777777776 6666666677777777777777776 4466
Q ss_pred cccccccc
Q 041953 267 YKLLFSIK 274 (279)
Q Consensus 267 ~~~~~~~~ 274 (279)
+++ ++++
T Consensus 295 gnl-hL~~ 301 (565)
T KOG0472|consen 295 GNL-HLKF 301 (565)
T ss_pred ccc-eeee
Confidence 666 4443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=1.3e-20 Score=153.95 Aligned_cols=199 Identities=31% Similarity=0.488 Sum_probs=159.3
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG 133 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 133 (279)
+++.++.+.|.+. ..++.++.+..++.++..+|.+. ..|..+..+.+|..+++.+|++. ..|+..-.+..|++++..
T Consensus 115 ~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCN 191 (565)
T ss_pred hhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccc
Confidence 4445555555554 34455555556666666666665 55666666666777777777766 445554458899999999
Q ss_pred ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcc-cCCCCCccEEEccCccccc
Q 041953 134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKE-ICNLTKLKGLYLGGNRLQG 212 (279)
Q Consensus 134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~~~~ 212 (279)
.|.+. .+|+.. +.+.+|+-|++..|++. .+| .|..|..|+++.++.|.+. ..|.. .++++++.+|++.+|++.
T Consensus 192 ~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk- 265 (565)
T KOG0472|consen 192 SNLLE-TLPPEL-GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK- 265 (565)
T ss_pred hhhhh-cCChhh-cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-
Confidence 99997 999998 89999999999999998 777 8999999999999999998 45544 558999999999999998
Q ss_pred ccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953 213 EIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP 263 (279)
Q Consensus 213 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (279)
..|+.+.-+.+|++||+++|.|+ .+|.+++++ .|++|-+.+|++..+-.
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHH
Confidence 88999999999999999999998 778889999 99999999999987644
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=6.7e-16 Score=149.09 Aligned_cols=94 Identities=23% Similarity=0.221 Sum_probs=51.6
Q ss_pred cCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccC--------------------CCCCCCCEEeccCCcC
Q 041953 175 YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES--------------------GNLAELELMSLSENEL 234 (279)
Q Consensus 175 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~--------------------~~~~~L~~L~l~~n~i 234 (279)
+|+.|++++|......|..++++++|+.|++++|.....+|..+ ....+|+.|++++|.+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence 44555555554444455555555566666665553222333222 1124566666666666
Q ss_pred cccCCccccCCCCCCeEEccCC-cccccCcccccccc
Q 041953 235 QGAIPREWGNLTGLGILQLSDN-FLTGITPSSIYKLL 270 (279)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~ 270 (279)
+ .+|..+..+++|+.|++++| .+.+ +|..+..++
T Consensus 859 ~-~iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~ 893 (1153)
T PLN03210 859 E-EVPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLK 893 (1153)
T ss_pred c-cChHHHhcCCCCCEEECCCCCCcCc-cCccccccc
Confidence 5 56667777888888888875 4444 344444443
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=2.5e-15 Score=137.23 Aligned_cols=187 Identities=27% Similarity=0.405 Sum_probs=118.1
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG 133 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 133 (279)
+.+.|+++++.++ .+|..+. +.|+.|++++|.++ .+|..+. .+|++|++++|++. .+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4567777777776 3555443 46788888888877 5555443 47888888887776 4454432 357777777
Q ss_pred ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccC------------------
Q 041953 134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC------------------ 195 (279)
Q Consensus 134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~------------------ 195 (279)
+|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+.. +|..+.
T Consensus 250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCc
Confidence 77766 6665542 35677777777666 4454443 356666666666552 222111
Q ss_pred -CCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953 196 -NLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP 263 (279)
Q Consensus 196 -~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (279)
-.++|+.|++++|.++ .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++++++
T Consensus 322 ~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 322 TLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPE 384 (754)
T ss_pred cccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCH
Confidence 1235677777777766 3454443 67888888888886 4565443 578888888888887644
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=4.5e-16 Score=142.13 Aligned_cols=191 Identities=26% Similarity=0.418 Sum_probs=123.9
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
+.++.|++++|.++ .+|..+. .+|++|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 35778888888887 3454443 47777888777776 4554332 35666666666665 4444332 35566666
Q ss_pred eccccccccChhhhcCCCCCcEEEeecccccc--------------------cCCccCCCCccCcEEeccCCcccccCCc
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHG--------------------GIPSALSNCAYLQRLGLSSNDFSGVVPK 192 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--------------------~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 192 (279)
++|++. .+|..+ .++|+.|++++|.++. .+|..+ .++|+.|++++|.++. +|.
T Consensus 270 s~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~ 342 (754)
T PRK15370 270 FHNKIS-CLPENL---PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPA 342 (754)
T ss_pred cCCccC-cccccc---CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CCh
Confidence 666554 444433 1345555555555442 222222 2468888888888874 555
Q ss_pred ccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccc
Q 041953 193 EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK 268 (279)
Q Consensus 193 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 268 (279)
.+. ++|+.|++++|.++ .+|..+. ++|+.|+|++|+++ .+|..+. ..|+.|++++|.+.+. |.++..
T Consensus 343 ~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~L-P~sl~~ 409 (754)
T PRK15370 343 SLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRL-PESLPH 409 (754)
T ss_pred hhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccC-chhHHH
Confidence 443 68999999999997 5666553 68999999999998 5565554 3799999999999865 544433
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.66 E-value=4.3e-15 Score=143.57 Aligned_cols=194 Identities=21% Similarity=0.234 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG 133 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 133 (279)
+|+.|+++++.+. .++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4555555555554 3444455555566666655433223332 4455566666666554444555555566666666666
Q ss_pred ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCccc-------------------
Q 041953 134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI------------------- 194 (279)
Q Consensus 134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l------------------- 194 (279)
+|.....+|... ++++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+
T Consensus 690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhcc
Confidence 554333455433 4556666666655433233321 234566666666554 223211
Q ss_pred -----------CCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCC
Q 041953 195 -----------CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN 256 (279)
Q Consensus 195 -----------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 256 (279)
...++|+.|++++|.....+|..++.+++|+.|+|++|...+.+|... .+++|+.|++++|
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 012356677777776555677777777888888887764333444432 3444444444443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=4e-18 Score=152.13 Aligned_cols=200 Identities=31% Similarity=0.416 Sum_probs=115.5
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
..+++++++.+.+. .+|.-+..+.+|+.+....|.+. ..|..+....+|+.|...+|.+. .+|.....+..|++|++
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 45666666666666 34566666667777777766664 55555555566666666666665 55677777888888888
Q ss_pred eccccccccChhhhc-------------------------CCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc
Q 041953 133 GFNTLSGEIPANICS-------------------------NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS 187 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~-------------------------~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (279)
..|++. .+|...+. .++.|+.|++.+|.+++..-..+...++|+.|+|++|.+.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 888775 55553321 1233555555555555544445555566666666666655
Q ss_pred ccCCcccCCCCCccEEEccCcccccccCc----------------------cCCCCCCCCEEeccCCcCccc-CCccccC
Q 041953 188 GVVPKEICNLTKLKGLYLGGNRLQGEIPR----------------------ESGNLAELELMSLSENELQGA-IPREWGN 244 (279)
Q Consensus 188 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~----------------------~~~~~~~L~~L~l~~n~i~~~-~~~~~~~ 244 (279)
......+.++..|++|++++|.++ .+|+ .+..++.|+.+|++.|+++.. +|+...
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p- 474 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALP- 474 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCC-
Confidence 222233455556666666666554 3333 445556666666666665432 222222
Q ss_pred CCCCCeEEccCCcc
Q 041953 245 LTGLGILQLSDNFL 258 (279)
Q Consensus 245 ~~~L~~L~l~~n~l 258 (279)
.++|++||+++|.-
T Consensus 475 ~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTR 488 (1081)
T ss_pred CcccceeeccCCcc
Confidence 25666666666653
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1.2e-15 Score=138.75 Aligned_cols=194 Identities=27% Similarity=0.331 Sum_probs=124.2
Q ss_pred CCeEEEEEcCCCCccccCcccccCC-----------------CCCCEEEccCCcccCCCCccccCCCCCcEEEcccCccc
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNL-----------------SSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLS 114 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l-----------------~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~ 114 (279)
.+.|++|++++|.++. +|..+.++ ..|+.|++++|++. .+|. .+++|+.|++++|++.
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA 315 (788)
T ss_pred CCCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCccc
Confidence 5788888888888874 34322111 23555666666665 3343 2467888888888877
Q ss_pred ccCCccCCC-------------C----CCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCc
Q 041953 115 GAFPSFAFN-------------T----SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQ 177 (279)
Q Consensus 115 ~~~~~~~~~-------------l----~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 177 (279)
. +|..... + .+|++|++++|++. .+|.. ..+|+.|++++|.+. .+|.. ..+|+
T Consensus 316 ~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~ 385 (788)
T PRK15387 316 S-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLK 385 (788)
T ss_pred c-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccc
Confidence 3 3331110 0 24555555555554 34321 234455555555554 33322 23577
Q ss_pred EEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCc
Q 041953 178 RLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNF 257 (279)
Q Consensus 178 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 257 (279)
.|++++|.+.. .|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.+++.|+.|++++|+
T Consensus 386 ~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 386 ELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred eEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 88888887773 4432 256888888888887 45543 246888999999998 778889999999999999999
Q ss_pred ccccCccccccc
Q 041953 258 LTGITPSSIYKL 269 (279)
Q Consensus 258 l~~~~~~~~~~~ 269 (279)
+++..+.++..+
T Consensus 457 Ls~~~~~~L~~l 468 (788)
T PRK15387 457 LSERTLQALREI 468 (788)
T ss_pred CCchHHHHHHHH
Confidence 999888777444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=1.8e-17 Score=139.28 Aligned_cols=214 Identities=21% Similarity=0.179 Sum_probs=139.8
Q ss_pred CeEEEEEcCCCCccc------cCcccccCCCCCCEEEccCCcccCCCCccccCCCC---CcEEEcccCcccc----cCCc
Q 041953 53 HRVTVLNISRLNLTG------TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYT---LKYVSFRKNQLSG----AFPS 119 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~---L~~L~l~~n~~~~----~~~~ 119 (279)
+.++.++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|.+.. .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 457788887776651 23445667788888888888876545555554544 8888888887762 1223
Q ss_pred cCCCC-CCCcEEEeeccccccccCh---hhhcCCCCCcEEEeeccccccc----CCccCCCCccCcEEeccCCccccc--
Q 041953 120 FAFNT-SSLQYLDFGFNTLSGEIPA---NICSNLPFLEYLALSQNMFHGG----IPSALSNCAYLQRLGLSSNDFSGV-- 189 (279)
Q Consensus 120 ~~~~l-~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~-- 189 (279)
.+..+ ++|++|++++|.+.+.... ..+..+++|++|++++|.+.+. ++..+...++|+.|++++|.+.+.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 34455 7888888888887632211 2235667888888888877632 223344556888888888877533
Q ss_pred --CCcccCCCCCccEEEccCcccccccCccC-----CCCCCCCEEeccCCcCcc----cCCccccCCCCCCeEEccCCcc
Q 041953 190 --VPKEICNLTKLKGLYLGGNRLQGEIPRES-----GNLAELELMSLSENELQG----AIPREWGNLTGLGILQLSDNFL 258 (279)
Q Consensus 190 --~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~l 258 (279)
....+..+++|+.|++++|.+++.....+ ...+.|++|++++|.+++ .+...+..+++|+.+++++|.+
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 23345567788888888888764222111 124688888888888762 2234456668888888888888
Q ss_pred cccCcccc
Q 041953 259 TGITPSSI 266 (279)
Q Consensus 259 ~~~~~~~~ 266 (279)
+......+
T Consensus 291 ~~~~~~~~ 298 (319)
T cd00116 291 GEEGAQLL 298 (319)
T ss_pred cHHHHHHH
Confidence 87654333
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=3.2e-17 Score=137.77 Aligned_cols=208 Identities=19% Similarity=0.192 Sum_probs=153.0
Q ss_pred CCCeEEEEEcCCCCccccCcccccCCCC---CCEEEccCCcccCC----CCccccCC-CCCcEEEcccCccccc----CC
Q 041953 51 HSHRVTVLNISRLNLTGTIPSQLGNLSS---LQSLNLSCNRLSGS----IPSAIFTT-YTLKYVSFRKNQLSGA----FP 118 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~---L~~L~l~~~~i~~~----~~~~~~~~-~~L~~L~l~~n~~~~~----~~ 118 (279)
..++++.|++++|.+.+..+..+..+.. |++|++++|.+.+. +...+..+ ++|+.|++++|.+.+. +.
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 3569999999999997656666655555 99999999988732 33345566 8999999999998732 23
Q ss_pred ccCCCCCCCcEEEeeccccccccChhh---hcCCCCCcEEEeeccccccc----CCccCCCCccCcEEeccCCcccccCC
Q 041953 119 SFAFNTSSLQYLDFGFNTLSGEIPANI---CSNLPFLEYLALSQNMFHGG----IPSALSNCAYLQRLGLSSNDFSGVVP 191 (279)
Q Consensus 119 ~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~ 191 (279)
..+..+++|++|++++|.+.+.....+ +...++|++|++++|.+.+. +...+..+++|++|++++|.+.+...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 446677899999999998874222221 24567999999999987632 33456778899999999999875322
Q ss_pred cccC-----CCCCccEEEccCccccc----ccCccCCCCCCCCEEeccCCcCccc----CCccccCC-CCCCeEEccCCc
Q 041953 192 KEIC-----NLTKLKGLYLGGNRLQG----EIPRESGNLAELELMSLSENELQGA----IPREWGNL-TGLGILQLSDNF 257 (279)
Q Consensus 192 ~~l~-----~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~-~~L~~L~l~~n~ 257 (279)
..+. ..+.|+.|++++|.++. .+...+..+++|+.+++++|.+.+. ....+... +.++.+++.+|+
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 2221 24789999999999862 2334556668999999999999854 33444555 789999999887
Q ss_pred c
Q 041953 258 L 258 (279)
Q Consensus 258 l 258 (279)
+
T Consensus 319 ~ 319 (319)
T cd00116 319 F 319 (319)
T ss_pred C
Confidence 4
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.60 E-value=1.2e-14 Score=131.90 Aligned_cols=153 Identities=28% Similarity=0.491 Sum_probs=128.6
Q ss_pred CCCCChhHHHHHHHHHHhccCCCcccccCCCCCCCCCc-----ceeeeeeCCC----CCeEEEEEcCCCCccccCccccc
Q 041953 4 NTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVC-----NWTGVTCDVH----SHRVTVLNISRLNLTGTIPSQLG 74 (279)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~~~~~----~~~l~~L~l~~~~l~~~~~~~~~ 74 (279)
...+..+|..+|+.+|..+. ++.. .+|.. +.| .|.|+.|... ...++.|+|+++.+.+.+|..+.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~-~~~~---~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~ 439 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLG-LPLR---FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS 439 (623)
T ss_pred ccccCchHHHHHHHHHHhcC-Cccc---CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence 34567789999999999985 4321 36753 344 6999999522 23599999999999999999999
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcE
Q 041953 75 NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY 154 (279)
Q Consensus 75 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 154 (279)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+.....++..
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999998999877444456778
Q ss_pred EEeecccc
Q 041953 155 LALSQNMF 162 (279)
Q Consensus 155 L~l~~n~l 162 (279)
+++.+|..
T Consensus 520 l~~~~N~~ 527 (623)
T PLN03150 520 FNFTDNAG 527 (623)
T ss_pred EEecCCcc
Confidence 88887753
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=6.6e-17 Score=144.51 Aligned_cols=183 Identities=28% Similarity=0.359 Sum_probs=140.3
Q ss_pred CcccccCCCCCCEEEccCCcccCCCCccccC--------------------------CCCCcEEEcccCcccccCCccCC
Q 041953 69 IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFT--------------------------TYTLKYVSFRKNQLSGAFPSFAF 122 (279)
Q Consensus 69 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~--------------------------~~~L~~L~l~~n~~~~~~~~~~~ 122 (279)
+|+....++.|++|++..|.+. ..|+.+.. ++.|+.|.+.+|.++....+.+.
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~ 380 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV 380 (1081)
T ss_pred CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence 4455556778888888888876 44443322 12255556666666666666777
Q ss_pred CCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccE
Q 041953 123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKG 202 (279)
Q Consensus 123 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 202 (279)
.+.+|+.|+|++|++. .+|...+.++..|++|++++|+++ .+|+.+..+..|++|...+|.+. .+| .+..+++|+.
T Consensus 381 ~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 8899999999999997 899999899999999999999998 88889999999999999999887 677 6788999999
Q ss_pred EEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCC
Q 041953 203 LYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN 256 (279)
Q Consensus 203 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 256 (279)
+|++.|.++...-......++|++||+++|.-....-..|..++.+..+++.-|
T Consensus 457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred EecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 999999987543333333489999999999743244456777777777777766
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=2.8e-14 Score=130.07 Aligned_cols=192 Identities=31% Similarity=0.370 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCC-----------
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAF----------- 122 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----------- 122 (279)
.++.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|++++|.+. .+|..+.
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhchhhcCEEECcCCc
Confidence 57788888888873 443 2467888888888887 44432 345666666666554 2222110
Q ss_pred ------CCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccC-
Q 041953 123 ------NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC- 195 (279)
Q Consensus 123 ------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~- 195 (279)
..++|+.|++++|.+. .+|.. ..+|+.|++.+|.+. .+|.. ..+|+.|++++|.+.. +|....
T Consensus 294 Lt~LP~~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~lp~~ 363 (788)
T PRK15387 294 LTSLPVLPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTLPSE 363 (788)
T ss_pred cccccccccccceeECCCCccc-cCCCC----cccccccccccCccc-ccccc---ccccceEecCCCccCC-CCCCCcc
Confidence 1234555555555554 33221 111222222222222 11110 1245555555555542 221110
Q ss_pred ----------------CCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc
Q 041953 196 ----------------NLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT 259 (279)
Q Consensus 196 ----------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~ 259 (279)
...+|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|.++
T Consensus 364 L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 364 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT 435 (788)
T ss_pred cceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc
Confidence 0124555666666555 23322 245666666666665 34432 235666777777776
Q ss_pred ccCccccccccccc
Q 041953 260 GITPSSIYKLLFSI 273 (279)
Q Consensus 260 ~~~~~~~~~~~~~~ 273 (279)
.+ |.+++.+..+.
T Consensus 436 ~L-P~sl~~L~~L~ 448 (788)
T PRK15387 436 RL-PESLIHLSSET 448 (788)
T ss_pred cc-ChHHhhccCCC
Confidence 54 55666655443
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.41 E-value=2.7e-13 Score=117.39 Aligned_cols=201 Identities=34% Similarity=0.482 Sum_probs=154.6
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCC-CCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953 57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTY-TLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN 135 (279)
Q Consensus 57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 135 (279)
.+.+..+.+.. ....+..+..++.|++.++.+. .++....... +|+.|++++|.+. .++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 45666665532 2333445578899999999988 5666556663 8999999999988 55667788999999999999
Q ss_pred ccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccC
Q 041953 136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP 215 (279)
Q Consensus 136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 215 (279)
++. .++... ...+.|+.|++++|.+. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|.+. ..+
T Consensus 174 ~l~-~l~~~~-~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLL-SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhh-hhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 997 777755 47889999999999988 66665556667899999999544 45566777888888888888876 446
Q ss_pred ccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccc
Q 041953 216 RESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIY 267 (279)
Q Consensus 216 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 267 (279)
..+..++.++.|++++|+++.. +. +....+++.+++++|.+...++....
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred chhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhhhc
Confidence 7788888899999999999844 43 88889999999999988877664433
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.41 E-value=5.4e-15 Score=126.22 Aligned_cols=175 Identities=27% Similarity=0.466 Sum_probs=116.7
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEE
Q 041953 77 SSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLA 156 (279)
Q Consensus 77 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 156 (279)
..-...+++.|++. .+|..+..+-.|+.+.+..|.+. .+|..+.++..|.+++++.|++. .+|..++ .++ |+.|.
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-ceeEE
Confidence 33455666777766 66666666666777777777766 56666777777777777777775 6666652 233 67777
Q ss_pred eecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcc
Q 041953 157 LSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQG 236 (279)
Q Consensus 157 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 236 (279)
+++|+++ .+|..++....|..|+.+.|.+. ..|..++++.+|+.+.+..|.+. .+|..+.. -.|..||+++|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence 7777766 66666666666777777777766 56666667777777777777665 45555553 34667777777776
Q ss_pred cCCccccCCCCCCeEEccCCccccc
Q 041953 237 AIPREWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
.+|-.|.++..|++|-|.+|++.+.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCCC
Confidence 6666677777777777777777665
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=2.1e-14 Score=122.66 Aligned_cols=192 Identities=27% Similarity=0.417 Sum_probs=157.7
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG 133 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 133 (279)
..+..+++.|.+. .+|..+..|..|+.+.++.|.+. .+|..+..+..|++++++.|++. .+|..++.+ -|+.|.++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEe
Confidence 4566788888887 67888888889999999999988 78888999999999999999988 778877666 58899999
Q ss_pred ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccc
Q 041953 134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGE 213 (279)
Q Consensus 134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 213 (279)
+|++. .+|..+ +....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..+ .|..|+++.|++. .
T Consensus 152 NNkl~-~lp~~i-g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 152 NNKLT-SLPEEI-GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred cCccc-cCCccc-ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence 99997 888888 68889999999999987 77888889999999999999988 566666654 5889999999987 7
Q ss_pred cCccCCCCCCCCEEeccCCcCcccCCcccc---CCCCCCeEEccCC
Q 041953 214 IPRESGNLAELELMSLSENELQGAIPREWG---NLTGLGILQLSDN 256 (279)
Q Consensus 214 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~---~~~~L~~L~l~~n 256 (279)
+|-.|.+|..|++|.|.+|.++ ..|..+. ..--.++|+.+-+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 8889999999999999999997 5565442 2223455666555
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=4e-12 Score=110.09 Aligned_cols=178 Identities=36% Similarity=0.503 Sum_probs=147.6
Q ss_pred CeEEEEEcCCCCccccCcccccCCC-CCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLS-SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
..++.+++.++.++ .++.....+. +|+.|++++|.+. .++..+..+++|+.|++++|++. .++......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 46899999999998 5666666664 9999999999998 66667899999999999999998 6666666889999999
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+++|++. .+|... .....|+++.+++|.+. ..+..+..+.++..+.+.+|.+. ..+..+..++.++.|++++|.++
T Consensus 193 ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 193 LSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 9999998 888865 44666999999999644 55667888888899988888877 33667788889999999999998
Q ss_pred cccCccCCCCCCCCEEeccCCcCcccCC
Q 041953 212 GEIPRESGNLAELELMSLSENELQGAIP 239 (279)
Q Consensus 212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 239 (279)
.. +. ++...+++.|++++|.+....+
T Consensus 269 ~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 SI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cc-cc-ccccCccCEEeccCccccccch
Confidence 44 33 8888999999999998875544
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.1e-13 Score=113.17 Aligned_cols=212 Identities=21% Similarity=0.190 Sum_probs=121.8
Q ss_pred CCCeEEEEEcCCCCccccCc-ccccCCCCCCEEEccCCcccC--CCCccccCCCCCcEEEcccCcccccCCcc-CCCCCC
Q 041953 51 HSHRVTVLNISRLNLTGTIP-SQLGNLSSLQSLNLSCNRLSG--SIPSAIFTTYTLKYVSFRKNQLSGAFPSF-AFNTSS 126 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~ 126 (279)
+..+|+.+.|.++.+....- .....|++++.|+++.|-+.. ........+|+|+.|+++.|++.-...+. -..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34567777777766542111 345567777777777776542 12223345777777777777765222221 125567
Q ss_pred CcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCC-cccCCCCCccEEEc
Q 041953 127 LQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVP-KEICNLTKLKGLYL 205 (279)
Q Consensus 127 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l 205 (279)
|+.|.++.|.+.-.-...+...+|.|+.|++..|............+..|++|++++|.+.+... .....++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 77777777766532222333567777777777774211222223335567777887777663322 23455677777777
Q ss_pred cCcccccc-cCcc-----CCCCCCCCEEeccCCcCccc-CCccccCCCCCCeEEccCCcccccC
Q 041953 206 GGNRLQGE-IPRE-----SGNLAELELMSLSENELQGA-IPREWGNLTGLGILQLSDNFLTGIT 262 (279)
Q Consensus 206 ~~n~~~~~-~~~~-----~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~ 262 (279)
+.+.+.+. .|+. ...+++|++|+++.|+|.+. .-..+..+++|+.+.+..|.++...
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 77776532 2222 34567788888888777421 1123445567777777777766543
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=7.7e-13 Score=105.27 Aligned_cols=203 Identities=24% Similarity=0.274 Sum_probs=146.9
Q ss_pred CeEEEEEcCCCC--------ccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccc---cCC---
Q 041953 53 HRVTVLNISRLN--------LTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG---AFP--- 118 (279)
Q Consensus 53 ~~l~~L~l~~~~--------l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~--- 118 (279)
.++++|..++.. +...+|..+.-+++|..+.++.+.-. .+.+....-|.|+++.+.+.-+.. ..|
T Consensus 182 ~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~ 260 (490)
T KOG1259|consen 182 TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPETI 260 (490)
T ss_pred hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchhh
Confidence 378888877642 11234445556788999999988654 222323344667777776543320 011
Q ss_pred -----------------ccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEec
Q 041953 119 -----------------SFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGL 181 (279)
Q Consensus 119 -----------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 181 (279)
..+-.-.-|+++++++|.+. .+..+. .-.|.++.|+++.|++. .. +.+..+++|..||+
T Consensus 261 ~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDL 336 (490)
T KOG1259|consen 261 LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDL 336 (490)
T ss_pred hcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhh-hhccceeEEecccccee-ee-hhhhhcccceEeec
Confidence 11112256889999999997 777777 67899999999999987 32 45888999999999
Q ss_pred cCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc-CCccccCCCCCCeEEccCCcccc
Q 041953 182 SSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA-IPREWGNLTGLGILQLSDNFLTG 260 (279)
Q Consensus 182 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~ 260 (279)
++|.+. ....+--.+.+++.|.+++|.+.+ -..+..+-+|..||+++|+|+.. ....++++|-|+.+.+.+|++.+
T Consensus 337 S~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 337 SGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999987 444454567899999999999863 25677888999999999999632 23468999999999999999998
Q ss_pred cCc
Q 041953 261 ITP 263 (279)
Q Consensus 261 ~~~ 263 (279)
+..
T Consensus 414 ~vd 416 (490)
T KOG1259|consen 414 SVD 416 (490)
T ss_pred cch
Confidence 755
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=8.3e-13 Score=109.69 Aligned_cols=186 Identities=22% Similarity=0.189 Sum_probs=133.5
Q ss_pred CCCCCCEEEccCCcccCCCC-ccccCCCCCcEEEcccCccccc--CCccCCCCCCCcEEEeeccccccccChhhhcCCCC
Q 041953 75 NLSSLQSLNLSCNRLSGSIP-SAIFTTYTLKYVSFRKNQLSGA--FPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPF 151 (279)
Q Consensus 75 ~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 151 (279)
++.+|+.+.+.++.+..... .....|++++.|++++|-+... .......+|+|+.|+++.|++........-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 56789999999988863221 3567899999999999876522 22345688999999999998864333333346788
Q ss_pred CcEEEeecccccccCC-ccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccC--ccCCCCCCCCEEe
Q 041953 152 LEYLALSQNMFHGGIP-SALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP--RESGNLAELELMS 228 (279)
Q Consensus 152 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~ 228 (279)
|+.|.++.|+++.... ..+..+++|+.|++..|...........-+..|+.|++++|.+.. .+ ...+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence 9999999999874322 234567889999999885322223333446689999999998763 33 3457789999999
Q ss_pred ccCCcCcccC-Ccc-----ccCCCCCCeEEccCCccccc
Q 041953 229 LSENELQGAI-PRE-----WGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 229 l~~n~i~~~~-~~~-----~~~~~~L~~L~l~~n~l~~~ 261 (279)
++.+.+.... |.. ...+++|++|++..|++..+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 9999886432 222 35678999999999998665
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=1.4e-12 Score=105.43 Aligned_cols=185 Identities=25% Similarity=0.255 Sum_probs=116.3
Q ss_pred cCCCCCCEEEccCCcccCCCCcc----ccCCCCCcEEEcccCcccc----c---------CCccCCCCCCCcEEEeeccc
Q 041953 74 GNLSSLQSLNLSCNRLSGSIPSA----IFTTYTLKYVSFRKNQLSG----A---------FPSFAFNTSSLQYLDFGFNT 136 (279)
Q Consensus 74 ~~l~~L~~L~l~~~~i~~~~~~~----~~~~~~L~~L~l~~n~~~~----~---------~~~~~~~l~~L~~L~l~~n~ 136 (279)
..+++|++|++++|.+....+.. +..+..|++|.+.+|.+.. . ...-..+-+.|+++..+.|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 34567777777777766443332 3445667777777776541 1 11223345677788777777
Q ss_pred cccccC----hhhhcCCCCCcEEEeecccccc----cCCccCCCCccCcEEeccCCccccc----CCcccCCCCCccEEE
Q 041953 137 LSGEIP----ANICSNLPFLEYLALSQNMFHG----GIPSALSNCAYLQRLGLSSNDFSGV----VPKEICNLTKLKGLY 204 (279)
Q Consensus 137 ~~~~~~----~~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~ 204 (279)
+. .-+ ...|+..+.|+.+.+..|.|.. .+...+..+++|+.||+.+|.++.. +-..++.+++|+.++
T Consensus 169 le-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 169 LE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred cc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 65 222 2345667788888888877642 1224567788888888888877532 234556677888888
Q ss_pred ccCcccccccCccC-----CCCCCCCEEeccCCcCccc----CCccccCCCCCCeEEccCCccc
Q 041953 205 LGGNRLQGEIPRES-----GNLAELELMSLSENELQGA----IPREWGNLTGLGILQLSDNFLT 259 (279)
Q Consensus 205 l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~ 259 (279)
+++|.+.......+ ...|+|+.|.+.+|.|+.. +...+...+.|..|++++|.+.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 88887754322221 2357888888888877632 2223455778888888888883
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=1.8e-11 Score=92.47 Aligned_cols=108 Identities=30% Similarity=0.300 Sum_probs=33.1
Q ss_pred CCCCCCEEEccCCcccCCCCcccc-CCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCc
Q 041953 75 NLSSLQSLNLSCNRLSGSIPSAIF-TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLE 153 (279)
Q Consensus 75 ~l~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 153 (279)
+...+++|++.+|.|. .+. .+. .+.+|+.|++++|.+... +.+..++.|++|++++|++. .+...+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 3445677777777776 332 233 456777777777777632 34556777777777777776 55544434577777
Q ss_pred EEEeeccccccc-CCccCCCCccCcEEeccCCccc
Q 041953 154 YLALSQNMFHGG-IPSALSNCAYLQRLGLSSNDFS 187 (279)
Q Consensus 154 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~ 187 (279)
+|++++|.+... ....+..+++|+.|++.+|.+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777777531 1134455666666666666665
No 33
>PLN03150 hypothetical protein; Provisional
Probab=99.13 E-value=1e-10 Score=106.35 Aligned_cols=107 Identities=30% Similarity=0.478 Sum_probs=79.0
Q ss_pred CcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccC
Q 041953 152 LEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSE 231 (279)
Q Consensus 152 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 231 (279)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcCcccCCccccCC-CCCCeEEccCCcc
Q 041953 232 NELQGAIPREWGNL-TGLGILQLSDNFL 258 (279)
Q Consensus 232 n~i~~~~~~~~~~~-~~L~~L~l~~n~l 258 (279)
|++.+.+|..+... .++..+++.+|+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 77777777766543 3556677777753
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=9.9e-11 Score=88.48 Aligned_cols=127 Identities=28% Similarity=0.340 Sum_probs=44.4
Q ss_pred CCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCccc-CCCCCcc
Q 041953 123 NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI-CNLTKLK 201 (279)
Q Consensus 123 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~ 201 (279)
+..++++|++.+|.+. .+. ..-..+.+|+.|++++|.++ .+ +.+..++.|+.|++++|.++.. .+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 4556788888888776 443 23124677888888888876 33 3566777888888888887743 2233 3467788
Q ss_pred EEEccCccccccc-CccCCCCCCCCEEeccCCcCcccCC---ccccCCCCCCeEEcc
Q 041953 202 GLYLGGNRLQGEI-PRESGNLAELELMSLSENELQGAIP---REWGNLTGLGILQLS 254 (279)
Q Consensus 202 ~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~ 254 (279)
.|++++|.+.... -..+..+++|+.|++.+|++..... ..+..+|+|+.||-.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 8888888776422 1345667788888888887763321 234567777777654
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=2.3e-10 Score=71.34 Aligned_cols=61 Identities=38% Similarity=0.511 Sum_probs=42.3
Q ss_pred CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcc
Q 041953 198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFL 258 (279)
Q Consensus 198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l 258 (279)
++|+.|++++|.++...+..|.++++|++|++++|+++...+.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777655556667777777777777777666666777777777777777754
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=2.9e-11 Score=96.40 Aligned_cols=127 Identities=29% Similarity=0.286 Sum_probs=53.8
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEE
Q 041953 77 SSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLA 156 (279)
Q Consensus 77 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 156 (279)
..|+++++++|.|+ .+..+..-.|+++.|++++|.+... ..+..+++|+.|++++|.+. .+...- .++.+++.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh-~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWH-LKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhH-hhhcCEeeee
Confidence 34445555555444 3333444444555555555544321 22444445555555554443 222222 3344444455
Q ss_pred eecccccccCCccCCCCccCcEEeccCCcccccC-CcccCCCCCccEEEccCccc
Q 041953 157 LSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV-PKEICNLTKLKGLYLGGNRL 210 (279)
Q Consensus 157 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~ 210 (279)
+++|.+. . ...+..+.+|..||+++|.|.... -..+++++.|+++.+.+|++
T Consensus 359 La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 5444443 1 123344444444444444443211 12233444444444444444
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=1.3e-09 Score=67.94 Aligned_cols=61 Identities=34% Similarity=0.507 Sum_probs=44.4
Q ss_pred ccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcC
Q 041953 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234 (279)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 234 (279)
++|++|++++|.+....+..|..+++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777766566777777777777777777766667777777777777777764
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=8.2e-11 Score=95.40 Aligned_cols=183 Identities=20% Similarity=0.221 Sum_probs=135.3
Q ss_pred CCeEEEEEcCCCCccccCcc----cccCCCCCCEEEccCCcccCCCC-------------ccccCCCCCcEEEcccCccc
Q 041953 52 SHRVTVLNISRLNLTGTIPS----QLGNLSSLQSLNLSCNRLSGSIP-------------SAIFTTYTLKYVSFRKNQLS 114 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~----~~~~l~~L~~L~l~~~~i~~~~~-------------~~~~~~~~L~~L~l~~n~~~ 114 (279)
++++++|+||+|-+....+. -++.+..|++|++.+|.+..... .....-++|+++...+|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 45999999999988744333 34567899999999998863211 12344578999999999876
Q ss_pred cc----CCccCCCCCCCcEEEeeccccccc---cChhhhcCCCCCcEEEeecccccc----cCCccCCCCccCcEEeccC
Q 041953 115 GA----FPSFAFNTSSLQYLDFGFNTLSGE---IPANICSNLPFLEYLALSQNMFHG----GIPSALSNCAYLQRLGLSS 183 (279)
Q Consensus 115 ~~----~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~ 183 (279)
.. +...+...+.|+.+.+..|.+... +....+..++.|+.||+..|.++. .+...+..+++|++|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 22 224567789999999999988632 233446789999999999998763 3445678888999999999
Q ss_pred CcccccCCc----cc-CCCCCccEEEccCcccccc----cCccCCCCCCCCEEeccCCcC
Q 041953 184 NDFSGVVPK----EI-CNLTKLKGLYLGGNRLQGE----IPRESGNLAELELMSLSENEL 234 (279)
Q Consensus 184 n~~~~~~~~----~l-~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i 234 (279)
|.+....-. .+ ...+.|+.+.+.+|.++.. +.......+.|+.|+|++|.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 988653322 22 2368999999999998732 222344579999999999998
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=2.4e-10 Score=99.45 Aligned_cols=57 Identities=37% Similarity=0.538 Sum_probs=31.2
Q ss_pred ccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc
Q 041953 200 LKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT 259 (279)
Q Consensus 200 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~ 259 (279)
|+.+++++|.+. ..+..+..+..+..+++.+|++... ..+...+.+..+....|++.
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 566666666665 3334455566666666666666422 12344445555555555544
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=2.2e-09 Score=93.50 Aligned_cols=202 Identities=26% Similarity=0.264 Sum_probs=100.5
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
..++.+++.+|.+..+ ...+..+.+|++|++++|.|+.. ..+..++.|+.|++.+|.+... ..+..+..|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 4566666666666532 22245566666666666666532 1234455566666666666522 33334666666666
Q ss_pred eccccccccChhhhcCCCCCcEEEeecccccccC-------------C-c------cCCCCcc--CcEEeccCCcccccC
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI-------------P-S------ALSNCAY--LQRLGLSSNDFSGVV 190 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------~-~------~l~~l~~--L~~L~l~~n~~~~~~ 190 (279)
++|.+. .+.......+.+++.+++.+|.+.... + . .+..+.. |+.+.+++|.+.. .
T Consensus 170 ~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~-~ 247 (414)
T KOG0531|consen 170 SYNRIV-DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR-S 247 (414)
T ss_pred Ccchhh-hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc-c
Confidence 666665 333310134555555555555443100 0 0 0111111 4555566665542 2
Q ss_pred CcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc---CCcc-ccCCCCCCeEEccCCcccccCc
Q 041953 191 PKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA---IPRE-WGNLTGLGILQLSDNFLTGITP 263 (279)
Q Consensus 191 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~-~~~~~~L~~L~l~~n~l~~~~~ 263 (279)
+..+..+.++..+++.++.+... ..+...+.+..+....+++... .... ....+.++.+.+..|++....+
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 23344555666666666665422 2233445555555555554311 1111 3445566666666666655443
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.70 E-value=1.6e-10 Score=102.08 Aligned_cols=179 Identities=29% Similarity=0.260 Sum_probs=115.5
Q ss_pred cccccCCCCCCEEEccCCcccCCCCccccCC-CCCcEEEcccCccc----------ccCCccCCCCCCCcEEEeeccccc
Q 041953 70 PSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT-YTLKYVSFRKNQLS----------GAFPSFAFNTSSLQYLDFGFNTLS 138 (279)
Q Consensus 70 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~-~~L~~L~l~~n~~~----------~~~~~~~~~l~~L~~L~l~~n~~~ 138 (279)
|-.+..+..|+.|.++++.+.. ...+..+ .+|++| +.+|... +.+...+ .-..|...++++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 5556667888888888887762 1111111 134444 2233222 1111111 1135677778888875
Q ss_pred cccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccC
Q 041953 139 GEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRES 218 (279)
Q Consensus 139 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 218 (279)
.+...+ +-++.++.|++++|++.+. +.+..++.|++||++.|.+. ..|..-..-..|+.|.+++|.++.. ..+
T Consensus 178 -~mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gi 250 (1096)
T KOG1859|consen 178 -LMDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGI 250 (1096)
T ss_pred -hHHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhH
Confidence 555444 6688899999999988633 37888889999999999887 4443222223589999999988733 466
Q ss_pred CCCCCCCEEeccCCcCcccC-CccccCCCCCCeEEccCCccc
Q 041953 219 GNLAELELMSLSENELQGAI-PREWGNLTGLGILQLSDNFLT 259 (279)
Q Consensus 219 ~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~ 259 (279)
.++.+|+.||+++|-+.+.- -..++.+..|+.|.|.+|++-
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 78889999999999876422 123566778888999998873
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.7e-10 Score=91.86 Aligned_cols=177 Identities=19% Similarity=0.151 Sum_probs=110.0
Q ss_pred CCCEEEccCCcccC-CCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc-cccccChhhhcCCCCCcEE
Q 041953 78 SLQSLNLSCNRLSG-SIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT-LSGEIPANICSNLPFLEYL 155 (279)
Q Consensus 78 ~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L 155 (279)
.|+.||+++..|+. .....+..|.+|+.|.+.++++.+.+...+....+|+.++++++. ++.......+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57888888877762 233455678888888888888877766777788888888888764 2222333456788888888
Q ss_pred EeecccccccCCccC-CC-CccCcEEeccCCccc--ccCCcc-cCCCCCccEEEccCcc-cccccCccCCCCCCCCEEec
Q 041953 156 ALSQNMFHGGIPSAL-SN-CAYLQRLGLSSNDFS--GVVPKE-ICNLTKLKGLYLGGNR-LQGEIPRESGNLAELELMSL 229 (279)
Q Consensus 156 ~l~~n~l~~~~~~~l-~~-l~~L~~L~l~~n~~~--~~~~~~-l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l 229 (279)
++++|.+.......+ .. -.+|..|+++++.-. ...-.. ...+++|..|++++|. ++...-..+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 888887653222111 11 245677777665321 111111 2456777777777765 33333345666777777777
Q ss_pred cCCcCcccCCcc---ccCCCCCCeEEccCC
Q 041953 230 SENELQGAIPRE---WGNLTGLGILQLSDN 256 (279)
Q Consensus 230 ~~n~i~~~~~~~---~~~~~~L~~L~l~~n 256 (279)
+.|-. ++|.. +...|.|.+|++.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 77743 34433 345567777776654
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=1.8e-08 Score=94.37 Aligned_cols=127 Identities=23% Similarity=0.237 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCc--ccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNR--LSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~--i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
.++.+.+-++.+. .++.... .+.|++|-+.+|. +.....+.|..++.|++|++++|.-.+.+|..++.+-+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 3444444455443 2232222 2356666666664 3323333455677777777776655556677777777777777
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCC
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 184 (279)
+++..+. .+|..+ .+++.|.+|++..+......+.....+.+|++|.+...
T Consensus 602 L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 7777765 666666 66777777777665544344444455666777666544
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.3e-10 Score=92.65 Aligned_cols=219 Identities=19% Similarity=0.124 Sum_probs=145.2
Q ss_pred CeEEEEEcCCCCccc-cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC--CccCCCCCCCcE
Q 041953 53 HRVTVLNISRLNLTG-TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF--PSFAFNTSSLQY 129 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~ 129 (279)
++++++||++..++. ..-..++.+.+|+.|.+.++.+.+.+...+....+|+.++++.++--... .-.+.++..|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 369999999988873 33455678899999999999999888888899999999999998632111 123568899999
Q ss_pred EEeeccccccccChhhhc-CCCCCcEEEeeccccc---ccCCccCCCCccCcEEeccCCc-ccccCCcccCCCCCccEEE
Q 041953 130 LDFGFNTLSGEIPANICS-NLPFLEYLALSQNMFH---GGIPSALSNCAYLQRLGLSSND-FSGVVPKEICNLTKLKGLY 204 (279)
Q Consensus 130 L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~ 204 (279)
|++++|....+...-+.. --++|+.|+++++.-. ..+..-...+++|.+||+++|- ++...-..+..++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999999876443222222 2467888999876421 1122223568999999999864 3332333556788999999
Q ss_pred ccCcccccccC---ccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccccccc
Q 041953 205 LGGNRLQGEIP---RESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKFG 276 (279)
Q Consensus 205 l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 276 (279)
++.|.. ++| -.+...|.|.+|++.++--.+...-....+++|+. ..--++....+..+.+.+.-.||
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki---n~q~~~~iarpv~~~~~s~~IWg 414 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI---NCQHFNFIARPVSGQCESNMIWG 414 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc---cceeeeeeecccccccccchhhc
Confidence 999874 334 34677899999999876332121112234555442 22223333344566666665665
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.64 E-value=1.7e-08 Score=94.44 Aligned_cols=110 Identities=25% Similarity=0.279 Sum_probs=91.3
Q ss_pred CCCCeEEEEEcCCCC--ccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCC
Q 041953 50 VHSHRVTVLNISRLN--LTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSL 127 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 127 (279)
..++++++|-+..+. +..+..+.|..++.|+.|++++|.-.+.+|..++.+-+|++|+++++.+. .+|..+..+..|
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 345578899988886 55556667888999999999988766689999999999999999999998 889999999999
Q ss_pred cEEEeeccccccccChhhhcCCCCCcEEEeeccc
Q 041953 128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNM 161 (279)
Q Consensus 128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 161 (279)
.+|++..+.....+ ..+...+++|++|.+....
T Consensus 621 ~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccc-cchhhhcccccEEEeeccc
Confidence 99999988765334 4554679999999997654
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.50 E-value=3.3e-08 Score=78.11 Aligned_cols=206 Identities=17% Similarity=0.159 Sum_probs=122.5
Q ss_pred CeEEEEEcCCCCccc----cCcccccCCCCCCEEEccCCccc---CCCC-------ccccCCCCCcEEEcccCcccccCC
Q 041953 53 HRVTVLNISRLNLTG----TIPSQLGNLSSLQSLNLSCNRLS---GSIP-------SAIFTTYTLKYVSFRKNQLSGAFP 118 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~i~---~~~~-------~~~~~~~~L~~L~l~~n~~~~~~~ 118 (279)
..++.++|++|.|.. .+...+++-.+|+..+++.-... +.++ ..+..||+|+..+++.|-+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 367888888888763 34455666677777777763221 1222 334567888888888887765544
Q ss_pred c----cCCCCCCCcEEEeeccccccccChh-----h--------hcCCCCCcEEEeecccccccCCc-----cCCCCccC
Q 041953 119 S----FAFNTSSLQYLDFGFNTLSGEIPAN-----I--------CSNLPFLEYLALSQNMFHGGIPS-----ALSNCAYL 176 (279)
Q Consensus 119 ~----~~~~l~~L~~L~l~~n~~~~~~~~~-----~--------~~~~~~L~~L~l~~n~l~~~~~~-----~l~~l~~L 176 (279)
+ .+.+...|.+|.+++|.+. .+... . ..+-|.|+.+.+..|.+.. .+. .+..-..|
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~l 187 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENL 187 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCc
Confidence 3 3456677888888887664 22111 1 1345678888887777652 221 12233467
Q ss_pred cEEeccCCcccccC-----CcccCCCCCccEEEccCccccc----ccCccCCCCCCCCEEeccCCcCcccCCccc-----
Q 041953 177 QRLGLSSNDFSGVV-----PKEICNLTKLKGLYLGGNRLQG----EIPRESGNLAELELMSLSENELQGAIPREW----- 242 (279)
Q Consensus 177 ~~L~l~~n~~~~~~-----~~~l~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~----- 242 (279)
+++.+..|.|.... -..+.++.+|+.|++++|.++. .+.+.+..++.|+.|.+.+|-++.....++
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 77777777765221 1123456677888888877652 223445556667777777776654333222
Q ss_pred -cCCCCCCeEEccCCcccc
Q 041953 243 -GNLTGLGILQLSDNFLTG 260 (279)
Q Consensus 243 -~~~~~L~~L~l~~n~l~~ 260 (279)
...|+|..|...+|...+
T Consensus 268 e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhcCCCccccccchhhhcC
Confidence 134666777777765544
No 47
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.48 E-value=1.6e-07 Score=53.71 Aligned_cols=40 Identities=48% Similarity=1.050 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHhccCCCcccccCCCCCC--CCCcceeeeeeC
Q 041953 9 TTDRDALLALKAHITHDPTNFFAKNWNTS--TPVCNWTGVTCD 49 (279)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~~~~w~~~--~~~c~~~~~~~~ 49 (279)
.+|+++|++||..+..+|...+ .+|... .++|.|.|+.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l-~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVL-SSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCC-TT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCccc-ccCCCcCCCCCeeeccEEeC
Confidence 5799999999999986676677 999987 799999999995
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=2.2e-08 Score=80.09 Aligned_cols=207 Identities=16% Similarity=0.144 Sum_probs=105.2
Q ss_pred EEEEEcCCCCccccC-ccccc-CCCCCCEEEccCCcccC--CCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEE
Q 041953 55 VTVLNISRLNLTGTI-PSQLG-NLSSLQSLNLSCNRLSG--SIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130 (279)
Q Consensus 55 l~~L~l~~~~l~~~~-~~~~~-~l~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 130 (279)
+..+.+.++.+...- ...|+ ....++++++.+|.|++ .+...+.++|.|++|++++|++...+...-....+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 445566666654211 11222 34678888898888873 344556778889999999888774443332456688888
Q ss_pred EeeccccccccChhhhcCCCCCcEEEeecccccc--cCCccCCCC-ccCcEEeccCCcccc--cCCcccCCCCCccEEEc
Q 041953 131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG--GIPSALSNC-AYLQRLGLSSNDFSG--VVPKEICNLTKLKGLYL 205 (279)
Q Consensus 131 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l-~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l 205 (279)
.+.+..+.-.-.......+|.+++++++.|.+.. ...+..... +.+++|.+..|...- .....-+-++++..+.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 8887766433333344677888888888774321 111112111 234444444433210 00001112334444555
Q ss_pred cCcccccc-cCccCCCCCCCCEEeccCCcCccc-CCccccCCCCCCeEEccCCccccc
Q 041953 206 GGNRLQGE-IPRESGNLAELELMSLSENELQGA-IPREWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 206 ~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
..|++... ........+.+..|+|+.++|..- .-..+.+++.|..|.+.++++...
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 55544321 122333444455555555554311 012344555555555555555443
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=6.4e-07 Score=51.35 Aligned_cols=40 Identities=38% Similarity=0.587 Sum_probs=27.0
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccC
Q 041953 222 AELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGIT 262 (279)
Q Consensus 222 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 262 (279)
++|++|++++|+|+ .+|..+.++++|+.|++++|+++++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35777777777777 44555777777888888877777653
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=2.4e-08 Score=70.89 Aligned_cols=84 Identities=24% Similarity=0.308 Sum_probs=45.0
Q ss_pred CCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEE
Q 041953 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLY 204 (279)
Q Consensus 125 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 204 (279)
..|..+++++|.+. ..|+.+-..++.++.+++.+|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34444555555554 555554445555666666666655 44545555566666666666555 3344444455555555
Q ss_pred ccCcccc
Q 041953 205 LGGNRLQ 211 (279)
Q Consensus 205 l~~n~~~ 211 (279)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 5555543
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=7.8e-09 Score=91.69 Aligned_cols=127 Identities=24% Similarity=0.290 Sum_probs=83.6
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEe
Q 041953 78 SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLAL 157 (279)
Q Consensus 78 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 157 (279)
.|...+++.|.+. ....++.-++.|++|+|++|++... .++..++.|++||+++|.+. .+|..-...+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 4556666666665 4455666677788888888887633 36777888888888888876 66654433333 788888
Q ss_pred ecccccccCCccCCCCccCcEEeccCCcccccCC-cccCCCCCccEEEccCcccc
Q 041953 158 SQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVP-KEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 158 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~ 211 (279)
.+|.++.. ..+.++++|+.||+++|-+.+.-. .-+..+..|+.|++.||++-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88877522 356677778888888877654211 12334556777777777653
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.5e-07 Score=74.18 Aligned_cols=201 Identities=19% Similarity=0.170 Sum_probs=128.6
Q ss_pred CCCeEEEEEcCCCCccc--cCcccccCCCCCCEEEccCCcccCCCCccc-cCCCCCcEEEcccCcccc-cCCccCCCCCC
Q 041953 51 HSHRVTVLNISRLNLTG--TIPSQLGNLSSLQSLNLSCNRLSGSIPSAI-FTTYTLKYVSFRKNQLSG-AFPSFAFNTSS 126 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~ 126 (279)
.+++|+.+||.+|.++. .+...+.+++.|+.|+++.|.+...+ +.. ....+|++|-+.+..+.. .....+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 35689999999999873 44555678999999999999987332 222 345689999998876542 33455678889
Q ss_pred CcEEEeecccccc-ccChhhhcC-CCCCcEEEeecccccc--cCCccCCCCccCcEEeccCCcccccC-CcccCCCCCcc
Q 041953 127 LQYLDFGFNTLSG-EIPANICSN-LPFLEYLALSQNMFHG--GIPSALSNCAYLQRLGLSSNDFSGVV-PKEICNLTKLK 201 (279)
Q Consensus 127 L~~L~l~~n~~~~-~~~~~~~~~-~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~~~~L~ 201 (279)
+++|+++.|.... .+....... .+.++.+++.+|.... ..-..-...+++..+.+..|.+.... -..+..++.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 9999999885431 111111111 2345556665554320 00011123456777778888765322 23344566777
Q ss_pred EEEccCcccccc-cCccCCCCCCCCEEeccCCcCcccCCc------cccCCCCCCeEE
Q 041953 202 GLYLGGNRLQGE-IPRESGNLAELELMSLSENELQGAIPR------EWGNLTGLGILQ 252 (279)
Q Consensus 202 ~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~------~~~~~~~L~~L~ 252 (279)
.|+++.+++.+. ..+.+.+++.|..|.++++.+.+.+.. .++++++++.|+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 888888887642 236778899999999999988754322 245677777765
No 53
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.16 E-value=9.4e-06 Score=58.59 Aligned_cols=122 Identities=21% Similarity=0.284 Sum_probs=43.6
Q ss_pred cCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCC
Q 041953 120 FAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTK 199 (279)
Q Consensus 120 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 199 (279)
.|..+.+|+.+.+.. .+. .+....|.++.+|+.+.+..+ +.......+..++.++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 344555566665543 233 455555555555666665543 3323333455554555555543 222233334444555
Q ss_pred ccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCC
Q 041953 200 LKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGL 248 (279)
Q Consensus 200 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L 248 (279)
++.+.+..+ +.......+.+. .++.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 555555443 322333444443 555555543 2222333444444443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1.6e-05 Score=67.78 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccC
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKN 111 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n 111 (279)
..++.|++++|.++ .+|. + -.+|++|.+++|.--..+|+.+ .++|+.|.+++|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 45566666666555 3341 1 1246666666543222444332 245666666665
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=6.9e-06 Score=62.39 Aligned_cols=82 Identities=20% Similarity=0.264 Sum_probs=37.9
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecccccc--ccChhhhcCCCCCcEE
Q 041953 78 SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSG--EIPANICSNLPFLEYL 155 (279)
Q Consensus 78 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L 155 (279)
+...+++++|.+. . -+.|..++.|.+|.+.+|+|+...|.--..+++|+.|.+.+|.+.. ++.+ ...+++|++|
T Consensus 43 ~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYL 118 (233)
T ss_pred ccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCcccee
Confidence 3445555555553 1 1234455555555555555553333333334455555555555431 1111 1234555555
Q ss_pred Eeeccccc
Q 041953 156 ALSQNMFH 163 (279)
Q Consensus 156 ~l~~n~l~ 163 (279)
.+-+|.++
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 55555443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.10 E-value=9.7e-06 Score=61.62 Aligned_cols=128 Identities=20% Similarity=0.172 Sum_probs=91.6
Q ss_pred CCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953 79 LQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158 (279)
Q Consensus 79 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 158 (279)
=+.+++++.++. .+...-....+...+++++|.+.. ...|..++.|.+|.+++|+++ .+...+-..+++|+.|.+.
T Consensus 21 e~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chhhccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 355677776665 222211234467788999998762 256668899999999999998 7776665678899999999
Q ss_pred ccccccc-CCccCCCCccCcEEeccCCcccccCC---cccCCCCCccEEEccCccc
Q 041953 159 QNMFHGG-IPSALSNCAYLQRLGLSSNDFSGVVP---KEICNLTKLKGLYLGGNRL 210 (279)
Q Consensus 159 ~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~~ 210 (279)
+|.+... ..+.+..++.|++|.+-+|.+....- ..+..+++|+.|+++....
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9988621 12457788899999999988764322 2456778999999877643
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.05 E-value=3.2e-05 Score=55.78 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=44.8
Q ss_pred ChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCC
Q 041953 142 PANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNL 221 (279)
Q Consensus 142 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 221 (279)
+...|.++.+|+.+.+.. .+.......+..+.+++.+.+..+ +.......+.++..++.+.+.+ .+.......+..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 344445555555555543 233233344555555555555443 3333334445554555555544 2222333444445
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccc
Q 041953 222 AELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLF 271 (279)
Q Consensus 222 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 271 (279)
++|+.+++..+ +.......|.++ .|+.+.+.. .+..+...+|.++.+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 55555555443 332333445554 555555543 444444455555443
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=2.8e-07 Score=65.58 Aligned_cols=82 Identities=24% Similarity=0.305 Sum_probs=39.9
Q ss_pred CCCEEEccCCcccCCCCcccc-CCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEE
Q 041953 78 SLQSLNLSCNRLSGSIPSAIF-TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLA 156 (279)
Q Consensus 78 ~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 156 (279)
.|+..++++|.+. ..|..|. .++.++.|++++|.+. .+|..+..++.|+.|++..|++. ..|.-++. +.++..|+
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLD 129 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHhc
Confidence 3444455555554 3333333 2334555555555555 44444555555555555555554 44443322 55555555
Q ss_pred eeccccc
Q 041953 157 LSQNMFH 163 (279)
Q Consensus 157 l~~n~l~ 163 (279)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 5555443
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=1.2e-06 Score=69.52 Aligned_cols=210 Identities=20% Similarity=0.176 Sum_probs=139.3
Q ss_pred CCCeEEEEEcCCCCcc---ccC-------cccccCCCCCCEEEccCCcccCCCCc----cccCCCCCcEEEcccCccccc
Q 041953 51 HSHRVTVLNISRLNLT---GTI-------PSQLGNLSSLQSLNLSCNRLSGSIPS----AIFTTYTLKYVSFRKNQLSGA 116 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~---~~~-------~~~~~~l~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~l~~n~~~~~ 116 (279)
....++..++++--.. ..+ -+++.+|++|+.+++++|.|....|. .+..-..|.+|.+++|.+...
T Consensus 56 ~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 56 NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 3456777777654211 112 23556789999999999998865554 345567799999999976511
Q ss_pred ----CC---------ccCCCCCCCcEEEeeccccccccCh----hhhcCCCCCcEEEeecccccccCC-----ccCCCCc
Q 041953 117 ----FP---------SFAFNTSSLQYLDFGFNTLSGEIPA----NICSNLPFLEYLALSQNMFHGGIP-----SALSNCA 174 (279)
Q Consensus 117 ----~~---------~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~-----~~l~~l~ 174 (279)
+. .-..+-|.|+++....|++. ..+. ..+..-..|+++.+..|.|..... ..+..+.
T Consensus 136 aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~ 214 (388)
T COG5238 136 AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH 214 (388)
T ss_pred chhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC
Confidence 11 11235588999999999886 4333 233444689999999998762211 1345578
Q ss_pred cCcEEeccCCcccccC----CcccCCCCCccEEEccCcccccccCcc----C--CCCCCCCEEeccCCcCcccCCc----
Q 041953 175 YLQRLGLSSNDFSGVV----PKEICNLTKLKGLYLGGNRLQGEIPRE----S--GNLAELELMSLSENELQGAIPR---- 240 (279)
Q Consensus 175 ~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~~~~~----~--~~~~~L~~L~l~~n~i~~~~~~---- 240 (279)
+|+.|++..|.++-.. -..++.|+.|+.|++.+|-+....... | ...++|..|...+|.+.+-.-.
T Consensus 215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l 294 (388)
T COG5238 215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISL 294 (388)
T ss_pred cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeech
Confidence 9999999999886332 234567788999999999775433222 1 2357889999999976542211
Q ss_pred -cc--cCCCCCCeEEccCCccccc
Q 041953 241 -EW--GNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 241 -~~--~~~~~L~~L~l~~n~l~~~ 261 (279)
.+ ..+|-|..|.+.+|.+...
T Consensus 295 ~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 295 NEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhhhhcccHHHHHHHHccCcchhH
Confidence 11 4577888888888888764
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8e-06 Score=46.77 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=12.7
Q ss_pred CCEEEccCCcccCCCCccccCCCCCcEEEcccCcc
Q 041953 79 LQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113 (279)
Q Consensus 79 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~ 113 (279)
|++|++++|.|. .+|..+..+++|+.|++++|++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 344444444443 2233334444444444444433
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=0.00017 Score=61.68 Aligned_cols=138 Identities=15% Similarity=0.161 Sum_probs=88.0
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCC
Q 041953 73 LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL 152 (279)
Q Consensus 73 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 152 (279)
+..+.+++.|++++|.+. .+|. -.++|+.|.+++|.-...+|..+ .++|++|.+++|.....+| ..|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------ccc
Confidence 445688999999999887 5662 23469999999865444556544 3589999999883222444 347
Q ss_pred cEEEeecccccccCCccCCCC-ccCcEEeccCCc-ccc-cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEec
Q 041953 153 EYLALSQNMFHGGIPSALSNC-AYLQRLGLSSND-FSG-VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSL 229 (279)
Q Consensus 153 ~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~-~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 229 (279)
+.|++..+... . +..+ .+|+.|.+.++. ... ..+.. -.++|+.|.+.+|... ..|..+. .+|+.|++
T Consensus 115 e~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCc-c----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 77777665443 1 2222 356777775432 110 11111 1257999999998865 4555444 68999999
Q ss_pred cCCc
Q 041953 230 SENE 233 (279)
Q Consensus 230 ~~n~ 233 (279)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8763
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=9.6e-06 Score=74.49 Aligned_cols=180 Identities=18% Similarity=0.228 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCC--CC-----------ccc--cCCCCCcEEEcccCccc-ccC
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGS--IP-----------SAI--FTTYTLKYVSFRKNQLS-GAF 117 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~-----------~~~--~~~~~L~~L~l~~n~~~-~~~ 117 (279)
+++.+++.+.......-....... |+++.+.+-..... .. ..+ ..-.+|++|++++...- ...
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W 139 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW 139 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence 677777777665533333333333 66666655322100 00 000 01136888888875422 122
Q ss_pred CccC-CCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccc-cCCcccC
Q 041953 118 PSFA-FNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG-VVPKEIC 195 (279)
Q Consensus 118 ~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~ 195 (279)
+..+ ..+|+|+.|.+.+-.+...-....+.++++|..||+++.+++.. .+++.+++|+.|.+.+=.+.. ..-..+.
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 2222 35688888888886664332345567888888888888888633 577788888888777655542 1112355
Q ss_pred CCCCccEEEccCccccccc------CccCCCCCCCCEEeccCCcCcc
Q 041953 196 NLTKLKGLYLGGNRLQGEI------PRESGNLAELELMSLSENELQG 236 (279)
Q Consensus 196 ~~~~L~~L~l~~n~~~~~~------~~~~~~~~~L~~L~l~~n~i~~ 236 (279)
++++|+.||++........ -.--..+|.|+.||.|++.+.+
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 6788888888776543211 0111346778888888776654
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=6.4e-06 Score=75.63 Aligned_cols=141 Identities=21% Similarity=0.216 Sum_probs=100.1
Q ss_pred CCCcEEEeecccccccc-ChhhhcCCCCCcEEEeecccccc-cCCccCCCCccCcEEeccCCcccccCCcccCCCCCccE
Q 041953 125 SSLQYLDFGFNTLSGEI-PANICSNLPFLEYLALSQNMFHG-GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKG 202 (279)
Q Consensus 125 ~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 202 (279)
.+|++|++++......- +..+...+|.|+.|.+.+-.+.. .+.....+.++|..||++++.++.. ..++++.+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 68999999886543222 22334568999999998866532 2234456789999999999998854 56788899999
Q ss_pred EEccCccccc-ccCccCCCCCCCCEEeccCCcCcccC------CccccCCCCCCeEEccCCcccccCccccc
Q 041953 203 LYLGGNRLQG-EIPRESGNLAELELMSLSENELQGAI------PREWGNLTGLGILQLSDNFLTGITPSSIY 267 (279)
Q Consensus 203 L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~~------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 267 (279)
|.+.+-.+.. ..-..+..+++|+.||+|........ -+....+|+|+.||+++..+....-+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 9988877653 12235668999999999987654221 12234689999999999888776554443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=9.9e-05 Score=58.40 Aligned_cols=104 Identities=22% Similarity=0.265 Sum_probs=51.9
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCC--cccCCCCccccCCCCCcEEEcccCccccc-CCccCCCCCCCcE
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCN--RLSGSIPSAIFTTYTLKYVSFRKNQLSGA-FPSFAFNTSSLQY 129 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~ 129 (279)
..+..+++.+..++. -..|-.+++|+.|.++.| .+.+.++.....+|+|++++++.|++... -...+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 345555555555542 122334566777777776 44433444444456777777777766520 0112334455666
Q ss_pred EEeecccccc--ccChhhhcCCCCCcEEEee
Q 041953 130 LDFGFNTLSG--EIPANICSNLPFLEYLALS 158 (279)
Q Consensus 130 L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~ 158 (279)
|++.+|..+. ..-..+|.-+++|++|+-.
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 6666665442 1112234445555555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00022 Score=56.50 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=63.8
Q ss_pred CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccC--cccccCCccCCCCCCCcEEEeeccccccccChhh-
Q 041953 69 IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKN--QLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANI- 145 (279)
Q Consensus 69 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~- 145 (279)
+......+..|+.+.+.+..++. -..|..+++|+.|.++.| .+.+.++.....+|+|+++++++|++.. +..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 33444445666666666666541 123556778888888888 5554555555566888888888888752 1111
Q ss_pred -hcCCCCCcEEEeecccccccCC---ccCCCCccCcEEec
Q 041953 146 -CSNLPFLEYLALSQNMFHGGIP---SALSNCAYLQRLGL 181 (279)
Q Consensus 146 -~~~~~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l 181 (279)
...+.+|..|++.+|..+...- ..+..+++|++|+-
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 2456667777777776542100 12334555555543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=5.5e-05 Score=60.52 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=38.4
Q ss_pred CCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCC-ccCCCCccCcEEe
Q 041953 102 TLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP-SALSNCAYLQRLG 180 (279)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ 180 (279)
+.+.|+..+|.+..+ .....++.|+.|.|+-|++. .+.. +..+.+|++|+|..|.|.+... ..+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 445555555554321 23335555555555555554 3322 2345555555555555542111 2344455555555
Q ss_pred ccCCccc
Q 041953 181 LSSNDFS 187 (279)
Q Consensus 181 l~~n~~~ 187 (279)
|..|...
T Consensus 95 L~ENPCc 101 (388)
T KOG2123|consen 95 LDENPCC 101 (388)
T ss_pred hccCCcc
Confidence 5555443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=4.8e-05 Score=60.84 Aligned_cols=101 Identities=27% Similarity=0.238 Sum_probs=70.1
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC-CccCCCCCCCcEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF-PSFAFNTSSLQYL 130 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L 130 (279)
...++.|+..+|++..+. ....|+.|+.|.++-|+|+.. ..+..|.+|+.|+|..|.|.... -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 346888899999887432 244688999999999999733 34788899999999999887321 1346788888888
Q ss_pred EeeccccccccChh----hhcCCCCCcEEE
Q 041953 131 DFGFNTLSGEIPAN----ICSNLPFLEYLA 156 (279)
Q Consensus 131 ~l~~n~~~~~~~~~----~~~~~~~L~~L~ 156 (279)
.+..|+=.+..+.. +..-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88877655443332 234456666554
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.19 E-value=0.00034 Score=62.14 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=17.1
Q ss_pred CCCCcEEEeeccc-cccccChhhhcCCCCCcEEEeeccc
Q 041953 124 TSSLQYLDFGFNT-LSGEIPANICSNLPFLEYLALSQNM 161 (279)
Q Consensus 124 l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~ 161 (279)
+++|++|.+..+. ++......+...++.|++|+++++.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4455555544444 2322222333445555555555443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.75 E-value=0.0042 Score=29.52 Aligned_cols=12 Identities=58% Similarity=0.581 Sum_probs=6.4
Q ss_pred CCeEEccCCccc
Q 041953 248 LGILQLSDNFLT 259 (279)
Q Consensus 248 L~~L~l~~n~l~ 259 (279)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.48 E-value=0.0055 Score=29.12 Aligned_cols=19 Identities=42% Similarity=0.732 Sum_probs=9.3
Q ss_pred CCEEeccCCcCcccCCcccc
Q 041953 224 LELMSLSENELQGAIPREWG 243 (279)
Q Consensus 224 L~~L~l~~n~i~~~~~~~~~ 243 (279)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3343343
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.29 E-value=0.00077 Score=59.89 Aligned_cols=111 Identities=20% Similarity=0.103 Sum_probs=60.6
Q ss_pred CCCCCEEEccCCcccCC--CCccccCCCCCcEEEcccC-cccccC----CccCCCCCCCcEEEeeccc-cccccChhhhc
Q 041953 76 LSSLQSLNLSCNRLSGS--IPSAIFTTYTLKYVSFRKN-QLSGAF----PSFAFNTSSLQYLDFGFNT-LSGEIPANICS 147 (279)
Q Consensus 76 l~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~n-~~~~~~----~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~ 147 (279)
++.|+.+.+..+.-... .......+++|+.|+++++ ...... ......+++|+.++++++. +....-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56777777776632212 2234456777888887763 111111 1223345777777777776 44222333333
Q ss_pred CCCCCcEEEeeccc-ccccCC-ccCCCCccCcEEeccCCcc
Q 041953 148 NLPFLEYLALSQNM-FHGGIP-SALSNCAYLQRLGLSSNDF 186 (279)
Q Consensus 148 ~~~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~~ 186 (279)
.+++|++|.+.++. +++..- .....++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 46778887766665 332211 2234466688888876653
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.93 E-value=0.039 Score=24.29 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=4.7
Q ss_pred CCCEEeccCCcCc
Q 041953 223 ELELMSLSENELQ 235 (279)
Q Consensus 223 ~L~~L~l~~n~i~ 235 (279)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444555555443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.0069 Score=46.44 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=31.7
Q ss_pred CcEEeccCCcccccCCcccCCCCCccEEEccCccccc-ccCccC-CCCCCCCEEeccCC-cCcccCCccccCCCCCCeEE
Q 041953 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG-EIPRES-GNLAELELMSLSEN-ELQGAIPREWGNLTGLGILQ 252 (279)
Q Consensus 176 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~-~~~~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~ 252 (279)
++.++.+++.|....-+.+.+++.++.+.+.+|.-.+ ..-..+ +..++|+.|+|++| +|++..-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3444444444443333344444444444444443110 000000 12245555555544 33333333444445555544
Q ss_pred cc
Q 041953 253 LS 254 (279)
Q Consensus 253 l~ 254 (279)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 44
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.38 E-value=0.064 Score=26.44 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=11.4
Q ss_pred CCCCeEEccCCcccccCcccc
Q 041953 246 TGLGILQLSDNFLTGITPSSI 266 (279)
Q Consensus 246 ~~L~~L~l~~n~l~~~~~~~~ 266 (279)
++|+.|++++|.+..+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 445555666665555544443
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.38 E-value=0.064 Score=26.44 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=11.4
Q ss_pred CCCCeEEccCCcccccCcccc
Q 041953 246 TGLGILQLSDNFLTGITPSSI 266 (279)
Q Consensus 246 ~~L~~L~l~~n~l~~~~~~~~ 266 (279)
++|+.|++++|.+..+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 445555666665555544443
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.18 E-value=0.024 Score=27.46 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=11.0
Q ss_pred CCCCeEEccCCcccccCcccc
Q 041953 246 TGLGILQLSDNFLTGITPSSI 266 (279)
Q Consensus 246 ~~L~~L~l~~n~l~~~~~~~~ 266 (279)
++|+.|+|++|.+++....++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666665544443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=0.011 Score=45.27 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=45.7
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccC-CCCcccc-CCCCCcEEEcccCc-ccccCCccCCCCCCCcEE
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSG-SIPSAIF-TTYTLKYVSFRKNQ-LSGAFPSFAFNTSSLQYL 130 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~-~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L 130 (279)
.++.++-+++.|..+--..+..++.++.|.+.+|+--+ ..-+.+. -.++|+.|++++|. |+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 57888888888776666677777777878887775321 1111111 23566666666553 332222334445555555
Q ss_pred Eeec
Q 041953 131 DFGF 134 (279)
Q Consensus 131 ~l~~ 134 (279)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 4443
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.90 E-value=0.00015 Score=64.00 Aligned_cols=181 Identities=24% Similarity=0.267 Sum_probs=87.3
Q ss_pred EEEEEcCCCCccc----cCcccccCCCCCCEEEccCCcccCCCCc----cccCC-CCCcEEEcccCcccc----cCCccC
Q 041953 55 VTVLNISRLNLTG----TIPSQLGNLSSLQSLNLSCNRLSGSIPS----AIFTT-YTLKYVSFRKNQLSG----AFPSFA 121 (279)
Q Consensus 55 l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~----~~~~~-~~L~~L~l~~n~~~~----~~~~~~ 121 (279)
+..+.+.+|.+.. .+...+.....|+.|++++|.+.+.... .+... ..+++|++..|.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5666777776653 2234455566777777777776632211 12222 345566666666542 222344
Q ss_pred CCCCCCcEEEeecccccc----ccChhh---hcCCCCCcEEEeeccccccc----CCccCCCCcc-CcEEeccCCccccc
Q 041953 122 FNTSSLQYLDFGFNTLSG----EIPANI---CSNLPFLEYLALSQNMFHGG----IPSALSNCAY-LQRLGLSSNDFSGV 189 (279)
Q Consensus 122 ~~l~~L~~L~l~~n~~~~----~~~~~~---~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~-L~~L~l~~n~~~~~ 189 (279)
.....++.++++.|.+.. .++... +....++++|.+.+|.++.. +...+...+. +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456666666766666531 011111 12345566666666655421 1112223333 44466666655432
Q ss_pred ----CCcccCCC-CCccEEEccCccccccc----CccCCCCCCCCEEeccCCcCc
Q 041953 190 ----VPKEICNL-TKLKGLYLGGNRLQGEI----PRESGNLAELELMSLSENELQ 235 (279)
Q Consensus 190 ----~~~~l~~~-~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~ 235 (279)
..+.+... ..++.++++.|.++... +..+...+.++.+.+++|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 11222222 34556666666554322 222333445555666655554
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.44 E-value=0.11 Score=25.52 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=11.5
Q ss_pred CCCcEEEeeccccccccChhhh
Q 041953 125 SSLQYLDFGFNTLSGEIPANIC 146 (279)
Q Consensus 125 ~~L~~L~l~~n~~~~~~~~~~~ 146 (279)
++|++|++++|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45555666666555 5555443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.44 E-value=0.11 Score=25.52 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=11.5
Q ss_pred CCCcEEEeeccccccccChhhh
Q 041953 125 SSLQYLDFGFNTLSGEIPANIC 146 (279)
Q Consensus 125 ~~L~~L~l~~n~~~~~~~~~~~ 146 (279)
++|++|++++|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45555666666555 5555443
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.81 E-value=0.00037 Score=61.55 Aligned_cols=183 Identities=25% Similarity=0.190 Sum_probs=111.1
Q ss_pred CCEEEccCCcccCC----CCccccCCCCCcEEEcccCcccccC----CccCCCC-CCCcEEEeecccccc----ccChhh
Q 041953 79 LQSLNLSCNRLSGS----IPSAIFTTYTLKYVSFRKNQLSGAF----PSFAFNT-SSLQYLDFGFNTLSG----EIPANI 145 (279)
Q Consensus 79 L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~l-~~L~~L~l~~n~~~~----~~~~~~ 145 (279)
+..+.+.+|.+.+. +...+...+.|..|++++|.+.... -..+... ..+++|++..|.+.. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67778888877643 2234566778888999988876221 1223333 566777777776653 223333
Q ss_pred hcCCCCCcEEEeecccccc----cCCccCC----CCccCcEEeccCCcccccC----CcccCCCCC-ccEEEccCccccc
Q 041953 146 CSNLPFLEYLALSQNMFHG----GIPSALS----NCAYLQRLGLSSNDFSGVV----PKEICNLTK-LKGLYLGGNRLQG 212 (279)
Q Consensus 146 ~~~~~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~l~~n~~~~~~----~~~l~~~~~-L~~L~l~~n~~~~ 212 (279)
.....++.++++.|.+.. ..+..+. ...++++|.+.+|.++... ...+...+. +..+++..|.+.+
T Consensus 169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 346678888888887631 1222233 3566788888887765211 122333344 6668888777653
Q ss_pred c----cCccCCCC-CCCCEEeccCCcCcccC----CccccCCCCCCeEEccCCcccccC
Q 041953 213 E----IPRESGNL-AELELMSLSENELQGAI----PREWGNLTGLGILQLSDNFLTGIT 262 (279)
Q Consensus 213 ~----~~~~~~~~-~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~l~~~~ 262 (279)
. ....+..+ ..++.++++.|+++... .+.+..++.++.+.+++|++....
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 2 22333444 67788888888887543 344566778888888888876543
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.48 E-value=0.43 Score=41.00 Aligned_cols=134 Identities=22% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCcc-cc-CcccccCCCCCCEEEccCCc-ccCCCCccc-cCCCCCcEEEcccCccc--ccCCccCCCCC
Q 041953 52 SHRVTVLNISRLNLT-GT-IPSQLGNLSSLQSLNLSCNR-LSGSIPSAI-FTTYTLKYVSFRKNQLS--GAFPSFAFNTS 125 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~-~~-~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~-~~~~~L~~L~l~~n~~~--~~~~~~~~~l~ 125 (279)
+.+++++..+++.-. .. +..--.+..+|+.|.+.+++ +++.....+ ..++.|+.+++..+... +.+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 557788888876532 11 11222356788888888875 332222222 35677888888877543 12223344678
Q ss_pred CCcEEEeeccccccccC----hhhhcCCCCCcEEEeeccccc-ccCCccCCCCccCcEEeccCCc
Q 041953 126 SLQYLDFGFNTLSGEIP----ANICSNLPFLEYLALSQNMFH-GGIPSALSNCAYLQRLGLSSND 185 (279)
Q Consensus 126 ~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~ 185 (279)
.|+.+.++++....+.. ......+..+..+.+.++... +...+.+..+++|+.+++-++.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 88888888775432221 111134567888888877643 2333456677788887776654
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.37 E-value=0.0094 Score=46.87 Aligned_cols=85 Identities=21% Similarity=0.173 Sum_probs=68.6
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
..+++.||++.+.+. .....|+-+..+..|+++.|.+. ..|..+.....+..+++.+|+.. ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 458899999998876 44556666778888999998887 77888888888888888888877 7788888999999998
Q ss_pred eecccccc
Q 041953 132 FGFNTLSG 139 (279)
Q Consensus 132 l~~n~~~~ 139 (279)
+-.+.+..
T Consensus 118 ~k~~~~~~ 125 (326)
T KOG0473|consen 118 QKKTEFFR 125 (326)
T ss_pred hccCcchH
Confidence 88887653
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.56 E-value=0.0071 Score=47.52 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=45.2
Q ss_pred cCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCE
Q 041953 147 SNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELEL 226 (279)
Q Consensus 147 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 226 (279)
..+.+.+.||++.|.+- .+...++.++.+..++++.|.+. ..|..++....++.+++-.|... ..|.+++..+.++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 44556666666666554 33344555555556666655555 44444444444555555444443 44555555555555
Q ss_pred EeccCCcC
Q 041953 227 MSLSENEL 234 (279)
Q Consensus 227 L~l~~n~i 234 (279)
+++..+.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 55555543
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.43 E-value=0.19 Score=43.11 Aligned_cols=159 Identities=21% Similarity=0.134 Sum_probs=84.7
Q ss_pred CCCCCcEEEcccCcccccCC--ccCCCCCCCcEEEeeccccccccC-hhhhcCCCCCcEEEeecccc-cccCCccC-CCC
Q 041953 99 TTYTLKYVSFRKNQLSGAFP--SFAFNTSSLQYLDFGFNTLSGEIP-ANICSNLPFLEYLALSQNMF-HGGIPSAL-SNC 173 (279)
Q Consensus 99 ~~~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~l~~n~l-~~~~~~~l-~~l 173 (279)
.++.+..+++.+|..-.... ..-..+..|+++..+++...++.+ ..+-.+.++|+.+.+++++. ++.--..+ .++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 34556677766664221110 112345677777776654332222 22335667888888877753 21111122 235
Q ss_pred ccCcEEeccCCccc--ccCCcccCCCCCccEEEccCcccc-ccc----CccCCCCCCCCEEeccCCcCc-ccCCccccCC
Q 041953 174 AYLQRLGLSSNDFS--GVVPKEICNLTKLKGLYLGGNRLQ-GEI----PRESGNLAELELMSLSENELQ-GAIPREWGNL 245 (279)
Q Consensus 174 ~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n~~~-~~~----~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~ 245 (279)
+.|+.+++..+... ..+...-.+++.|+.+.++.|... +.. ...-..+..++.+.+++++.. +..-+.+..+
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 66777777666532 112222345677888888777532 210 112234566777777777653 2333455667
Q ss_pred CCCCeEEccCCc
Q 041953 246 TGLGILQLSDNF 257 (279)
Q Consensus 246 ~~L~~L~l~~n~ 257 (279)
++|+.+++-++.
T Consensus 426 ~~Leri~l~~~q 437 (483)
T KOG4341|consen 426 RNLERIELIDCQ 437 (483)
T ss_pred cccceeeeechh
Confidence 777777776653
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.17 E-value=1.4 Score=21.80 Aligned_cols=16 Identities=44% Similarity=0.453 Sum_probs=10.5
Q ss_pred CCCCeEEccCCccccc
Q 041953 246 TGLGILQLSDNFLTGI 261 (279)
Q Consensus 246 ~~L~~L~l~~n~l~~~ 261 (279)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4667777777776554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.64 E-value=0.89 Score=22.83 Aligned_cols=15 Identities=40% Similarity=0.330 Sum_probs=7.7
Q ss_pred CCCeEEccCCccccc
Q 041953 247 GLGILQLSDNFLTGI 261 (279)
Q Consensus 247 ~L~~L~l~~n~l~~~ 261 (279)
+|+.|+|++|.+...
T Consensus 3 ~L~~LdL~~N~i~~~ 17 (28)
T smart00368 3 SLRELDLSNNKLGDE 17 (28)
T ss_pred ccCEEECCCCCCCHH
Confidence 455555555555433
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.87 E-value=1.9 Score=21.34 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=9.8
Q ss_pred CCCCEEeccCCcCcccCC
Q 041953 222 AELELMSLSENELQGAIP 239 (279)
Q Consensus 222 ~~L~~L~l~~n~i~~~~~ 239 (279)
+.|+.|++++|+++ .+|
T Consensus 2 ~~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLT-SLP 18 (26)
T ss_pred cccceeecCCCccc-cCc
Confidence 34566666666665 444
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.02 E-value=3 Score=37.34 Aligned_cols=64 Identities=27% Similarity=0.148 Sum_probs=30.4
Q ss_pred CCCCCCEEEccCCcccCC--CCccccCCCCCcEEEcccCcccccCCccCC--CCCCCcEEEeeccccc
Q 041953 75 NLSSLQSLNLSCNRLSGS--IPSAIFTTYTLKYVSFRKNQLSGAFPSFAF--NTSSLQYLDFGFNTLS 138 (279)
Q Consensus 75 ~l~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~~~ 138 (279)
+.+.+..+++++|++... +...-...|+|+.|+|++|...-.....+. ....|++|-+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 345566666666665421 111112345667777776622111111111 2235666666776665
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.73 E-value=5.9 Score=35.60 Aligned_cols=62 Identities=26% Similarity=0.178 Sum_probs=34.2
Q ss_pred CccCcEEeccCCcccccC--CcccCCCCCccEEEccCc--ccccccCccCC--CCCCCCEEeccCCcCcc
Q 041953 173 CAYLQRLGLSSNDFSGVV--PKEICNLTKLKGLYLGGN--RLQGEIPRESG--NLAELELMSLSENELQG 236 (279)
Q Consensus 173 l~~L~~L~l~~n~~~~~~--~~~l~~~~~L~~L~l~~n--~~~~~~~~~~~--~~~~L~~L~l~~n~i~~ 236 (279)
.+.+..+.+++|.+.... ...-...++|..|+|++| .+.. ..++. +...|++|-+.+|++.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 445667777777765221 111233567788888877 3321 11221 23457777788887753
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.99 E-value=9.1 Score=18.53 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=5.9
Q ss_pred CCCcEEEcccC
Q 041953 101 YTLKYVSFRKN 111 (279)
Q Consensus 101 ~~L~~L~l~~n 111 (279)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=34.47 E-value=1.4e+02 Score=26.90 Aligned_cols=61 Identities=23% Similarity=0.190 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCccccCcccccCC---CCCCEEEccCCccc-CC--CCccccCCCCCcEEEcccCcc
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNL---SSLQSLNLSCNRLS-GS--IPSAIFTTYTLKYVSFRKNQL 113 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l---~~L~~L~l~~~~i~-~~--~~~~~~~~~~L~~L~l~~n~~ 113 (279)
..+++++++.|.....+|..+..+ ..++.++.+...+. +. .+-.+..-.++++.+++.|..
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 467888888888776666544322 23566666665543 11 122223334677777766643
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.87 E-value=46 Score=36.44 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=25.6
Q ss_pred EcccCcccccCCccCCCCCCCcEEEeecccccc
Q 041953 107 SFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSG 139 (279)
Q Consensus 107 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 139 (279)
+|++|+|....+..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 477888885555667788889999998888763
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.81 E-value=50 Score=36.16 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=27.7
Q ss_pred EcCCCCccccCcccccCCCCCCEEEccCCccc
Q 041953 59 NISRLNLTGTIPSQLGNLSSLQSLNLSCNRLS 90 (279)
Q Consensus 59 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~ 90 (279)
+|++|.|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998777888999999999999999876
Done!