Query 041953
Match_columns 279
No_of_seqs 212 out of 3376
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 21:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 4.9E-39 1.7E-43 268.3 21.8 258 6-269 2-267 (313)
2 4fcg_A Uncharacterized protein 100.0 2.1E-36 7.3E-41 253.8 16.3 265 5-275 22-306 (328)
3 3rgz_A Protein brassinosteroid 100.0 7.3E-34 2.5E-38 263.5 18.4 261 2-272 4-296 (768)
4 4eco_A Uncharacterized protein 100.0 7.5E-34 2.6E-38 258.1 13.8 247 6-259 26-390 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 2.9E-32 9.8E-37 253.0 15.6 258 4-269 263-641 (876)
6 1ogq_A PGIP-2, polygalacturona 100.0 8.1E-31 2.8E-35 218.6 15.4 219 51-273 74-294 (313)
7 3rgz_A Protein brassinosteroid 100.0 7.1E-30 2.4E-34 236.7 19.0 133 53-186 418-550 (768)
8 2z66_A Variable lymphocyte rec 100.0 1.2E-29 4E-34 210.9 17.2 231 38-270 4-247 (306)
9 2o6q_A Variable lymphocyte rec 100.0 1E-28 3.5E-33 201.7 20.3 219 38-261 2-220 (270)
10 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-28 5.3E-33 202.1 19.3 211 52-263 31-242 (285)
11 3zyi_A Leucine-rich repeat-con 100.0 2.4E-28 8.2E-33 213.6 20.7 229 43-274 56-294 (452)
12 3zyj_A Leucine-rich repeat-con 100.0 7.2E-28 2.4E-32 209.9 19.7 229 43-274 45-283 (440)
13 3v47_A TOLL-like receptor 5B a 100.0 8.2E-28 2.8E-32 210.3 19.6 134 53-186 30-166 (455)
14 3v47_A TOLL-like receptor 5B a 100.0 7.1E-28 2.4E-32 210.7 17.6 122 152-273 277-398 (455)
15 2z80_A TOLL-like receptor 2, v 100.0 4.1E-29 1.4E-33 211.7 9.4 202 32-235 21-235 (353)
16 4fcg_A Uncharacterized protein 100.0 7.8E-28 2.7E-32 201.7 17.0 208 52-264 103-319 (328)
17 1ozn_A Reticulon 4 receptor; N 100.0 3.1E-27 1.1E-31 194.3 19.5 215 56-274 14-229 (285)
18 2ft3_A Biglycan; proteoglycan, 100.0 5.6E-27 1.9E-31 196.9 20.1 227 38-269 30-287 (332)
19 1xku_A Decorin; proteoglycan, 100.0 1.2E-26 4.1E-31 194.8 21.9 227 38-269 28-286 (330)
20 3zyj_A Leucine-rich repeat-con 100.0 6.1E-27 2.1E-31 204.0 20.4 208 50-259 85-292 (440)
21 2id5_A Lingo-1, leucine rich r 100.0 5.3E-27 1.8E-31 206.4 19.1 224 51-274 54-324 (477)
22 2id5_A Lingo-1, leucine rich r 100.0 4.5E-27 1.5E-31 206.9 18.4 220 53-273 32-299 (477)
23 3zyi_A Leucine-rich repeat-con 99.9 9.8E-27 3.4E-31 203.4 20.1 209 50-260 96-304 (452)
24 3o6n_A APL1; leucine-rich repe 99.9 6.4E-27 2.2E-31 200.8 16.9 134 53-187 45-178 (390)
25 3oja_B Anopheles plasmodium-re 99.9 7.1E-27 2.4E-31 211.0 17.4 205 54-260 52-315 (597)
26 2z66_A Variable lymphocyte rec 99.9 1.1E-26 3.9E-31 192.9 16.3 211 50-262 49-264 (306)
27 1xku_A Decorin; proteoglycan, 99.9 4.3E-26 1.5E-30 191.4 19.1 215 50-272 73-321 (330)
28 2z62_A TOLL-like receptor 4, v 99.9 1.3E-26 4.5E-31 189.7 15.6 209 53-263 28-241 (276)
29 3t6q_A CD180 antigen; protein- 99.9 1.9E-26 6.6E-31 208.6 18.1 219 51-270 299-524 (606)
30 3t6q_A CD180 antigen; protein- 99.9 9.7E-26 3.3E-30 204.0 20.8 219 54-274 279-504 (606)
31 3o6n_A APL1; leucine-rich repe 99.9 1.1E-25 3.6E-30 193.2 19.2 112 52-164 68-179 (390)
32 3rfs_A Internalin B, repeat mo 99.9 7.9E-26 2.7E-30 184.7 17.0 209 52-272 40-248 (272)
33 2z80_A TOLL-like receptor 2, v 99.9 1.6E-26 5.5E-31 195.8 11.6 214 50-263 73-318 (353)
34 3oja_B Anopheles plasmodium-re 99.9 2.2E-25 7.5E-30 201.2 19.0 216 52-270 74-348 (597)
35 1wwl_A Monocyte differentiatio 99.9 1.7E-26 5.7E-31 192.4 10.6 204 52-261 94-311 (312)
36 2ft3_A Biglycan; proteoglycan, 99.9 3.5E-25 1.2E-29 186.0 18.5 221 50-274 75-324 (332)
37 1ziw_A TOLL-like receptor 3; i 99.9 1.5E-25 5E-30 205.4 17.3 220 53-273 25-299 (680)
38 4eco_A Uncharacterized protein 99.9 1.1E-26 3.6E-31 211.2 9.2 208 50-261 203-448 (636)
39 1p9a_G Platelet glycoprotein I 99.9 9.8E-25 3.3E-29 179.8 19.3 201 52-260 9-209 (290)
40 3j0a_A TOLL-like receptor 5; m 99.9 4E-25 1.4E-29 206.9 19.0 222 52-273 47-365 (844)
41 3j0a_A TOLL-like receptor 5; m 99.9 2.5E-25 8.6E-30 208.2 17.2 223 51-273 22-341 (844)
42 2xwt_C Thyrotropin receptor; s 99.9 7.7E-25 2.6E-29 175.5 17.5 189 78-270 32-229 (239)
43 3vq2_A TLR4, TOLL-like recepto 99.9 2.8E-25 9.4E-30 201.0 16.6 195 73-269 346-543 (606)
44 1ziw_A TOLL-like receptor 3; i 99.9 7.7E-25 2.6E-29 200.6 19.3 213 54-267 382-605 (680)
45 3m19_A Variable lymphocyte rec 99.9 1.1E-24 3.8E-29 175.9 17.0 192 39-237 3-194 (251)
46 2o6q_A Variable lymphocyte rec 99.9 4E-24 1.4E-28 174.4 20.2 194 77-274 16-209 (270)
47 3vq2_A TLR4, TOLL-like recepto 99.9 7.1E-25 2.4E-29 198.3 16.0 210 51-263 348-562 (606)
48 3oja_A Leucine-rich immune mol 99.9 3.2E-25 1.1E-29 195.3 12.6 195 52-260 33-228 (487)
49 2z62_A TOLL-like receptor 4, v 99.9 1.6E-24 5.4E-29 177.4 15.6 211 59-274 13-228 (276)
50 2z7x_B TOLL-like receptor 1, v 99.9 3E-24 1E-28 190.9 17.1 86 50-138 42-128 (520)
51 4glp_A Monocyte differentiatio 99.9 6.5E-25 2.2E-29 182.6 11.8 202 54-261 92-309 (310)
52 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-24 5.6E-29 192.5 15.0 107 53-163 21-128 (520)
53 2xwt_C Thyrotropin receptor; s 99.9 3.2E-24 1.1E-28 171.8 15.2 197 53-256 31-236 (239)
54 3rfs_A Internalin B, repeat mo 99.9 7.8E-24 2.7E-28 172.9 17.6 201 56-263 22-222 (272)
55 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.4E-24 1.2E-28 192.2 16.7 107 53-163 52-159 (562)
56 1wwl_A Monocyte differentiatio 99.9 7.4E-26 2.5E-30 188.5 5.3 213 55-274 65-300 (312)
57 2z63_A TOLL-like receptor 4, v 99.9 2E-24 6.9E-29 193.8 15.0 189 74-263 344-535 (570)
58 2z81_A CD282 antigen, TOLL-lik 99.9 6.3E-25 2.1E-29 196.4 11.3 210 53-263 26-240 (549)
59 3o53_A Protein LRIM1, AGAP0063 99.9 9.6E-25 3.3E-29 182.2 11.4 212 53-271 34-263 (317)
60 3m19_A Variable lymphocyte rec 99.9 3.1E-23 1.1E-27 167.3 18.8 180 78-261 15-194 (251)
61 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.8E-24 3E-28 189.6 17.1 86 50-138 73-159 (562)
62 1p9a_G Platelet glycoprotein I 99.9 2.5E-23 8.6E-28 171.3 18.1 189 73-269 6-194 (290)
63 2z63_A TOLL-like receptor 4, v 99.9 5.7E-24 2E-28 190.9 15.1 217 53-274 282-522 (570)
64 4ecn_A Leucine-rich repeat pro 99.9 1.3E-24 4.3E-29 202.0 10.7 183 50-237 445-659 (876)
65 4g8a_A TOLL-like receptor 4; l 99.9 5.2E-23 1.8E-27 186.6 20.8 77 193-269 489-565 (635)
66 1h6u_A Internalin H; cell adhe 99.9 1.5E-23 5.1E-28 174.2 15.5 195 52-263 40-234 (308)
67 2z81_A CD282 antigen, TOLL-lik 99.9 2.1E-24 7.2E-29 193.0 11.0 130 50-179 47-177 (549)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-24 7.1E-29 180.1 9.3 209 51-265 56-282 (317)
69 4fmz_A Internalin; leucine ric 99.9 5.3E-23 1.8E-27 173.6 17.1 209 50-273 107-336 (347)
70 4fmz_A Internalin; leucine ric 99.9 9.1E-23 3.1E-27 172.2 17.6 212 49-274 84-315 (347)
71 3oja_A Leucine-rich immune mol 99.9 6.6E-24 2.3E-28 186.9 9.8 208 50-272 55-264 (487)
72 3cvr_A Invasion plasmid antige 99.9 5.1E-23 1.7E-27 183.3 13.0 209 32-271 34-255 (571)
73 1o6v_A Internalin A; bacterial 99.9 3.8E-22 1.3E-26 175.0 17.9 193 52-261 176-390 (466)
74 2o6s_A Variable lymphocyte rec 99.9 3.3E-22 1.1E-26 156.7 15.2 187 38-247 4-190 (208)
75 1o6v_A Internalin A; bacterial 99.9 3.5E-22 1.2E-26 175.2 16.4 204 52-271 220-434 (466)
76 3bz5_A Internalin-J, INLJ; leu 99.9 2.3E-21 7.9E-26 169.3 19.8 195 52-270 63-257 (457)
77 2o6s_A Variable lymphocyte rec 99.9 1.2E-21 4.2E-26 153.4 14.7 182 80-272 10-191 (208)
78 3bz5_A Internalin-J, INLJ; leu 99.9 4.5E-21 1.6E-25 167.5 19.7 196 52-273 41-236 (457)
79 1h6u_A Internalin H; cell adhe 99.9 1.5E-21 5.2E-26 162.1 14.5 184 73-273 37-220 (308)
80 2ast_B S-phase kinase-associat 99.9 1.2E-23 4.1E-28 176.8 1.1 202 54-256 71-282 (336)
81 4glp_A Monocyte differentiatio 99.9 3.3E-22 1.1E-26 166.3 9.4 203 54-261 65-287 (310)
82 2ca6_A RAN GTPase-activating p 99.9 1.4E-23 4.9E-28 179.7 -0.1 211 52-262 59-319 (386)
83 2ast_B S-phase kinase-associat 99.9 5.7E-23 2E-27 172.6 3.4 222 51-276 91-323 (336)
84 1h6t_A Internalin B; cell adhe 99.9 6.1E-21 2.1E-25 157.1 13.4 168 53-235 46-213 (291)
85 4ay9_X Follicle-stimulating ho 99.9 1.5E-20 5.2E-25 158.9 15.8 213 39-256 7-233 (350)
86 4g8a_A TOLL-like receptor 4; l 99.8 2.2E-20 7.6E-25 169.3 17.5 207 52-260 370-581 (635)
87 2ca6_A RAN GTPase-activating p 99.8 6E-23 2E-27 175.9 0.5 222 52-273 31-306 (386)
88 4ay9_X Follicle-stimulating ho 99.8 3.3E-20 1.1E-24 156.7 16.5 214 57-275 13-231 (350)
89 3e6j_A Variable lymphocyte rec 99.8 4.1E-20 1.4E-24 146.9 16.0 164 32-212 10-173 (229)
90 2v70_A SLIT-2, SLIT homolog 2 99.8 4.5E-20 1.5E-24 145.8 15.2 153 80-236 14-167 (220)
91 2v9t_B SLIT homolog 2 protein 99.8 5.6E-20 1.9E-24 145.3 15.5 152 80-235 14-165 (220)
92 2xot_A Amphoterin-induced prot 99.8 2.9E-20 1E-24 157.7 13.6 175 57-235 22-202 (361)
93 1m9s_A Internalin B; cell inva 99.8 2.6E-20 8.8E-25 167.5 13.9 171 52-237 42-212 (605)
94 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-19 4.3E-24 163.3 18.3 89 174-271 221-309 (622)
95 3goz_A Leucine-rich repeat-con 99.8 2.7E-22 9.2E-27 170.4 0.8 207 54-261 23-268 (362)
96 2v9t_B SLIT homolog 2 protein 99.8 1.4E-19 5E-24 142.9 15.2 151 57-211 15-165 (220)
97 2xot_A Amphoterin-induced prot 99.8 4.7E-20 1.6E-24 156.5 11.5 173 38-211 15-202 (361)
98 3goz_A Leucine-rich repeat-con 99.8 1.2E-21 4.1E-26 166.3 1.7 211 57-267 2-246 (362)
99 3g06_A SSPH2 (leucine-rich rep 99.8 9.9E-19 3.4E-23 157.5 20.0 68 198-274 221-288 (622)
100 1h6t_A Internalin B; cell adhe 99.8 1.2E-19 3.9E-24 149.5 12.3 194 57-267 28-221 (291)
101 4ezg_A Putative uncharacterize 99.8 1.3E-19 4.3E-24 140.8 11.8 154 98-260 41-195 (197)
102 1m9s_A Internalin B; cell inva 99.8 2E-19 6.8E-24 161.7 14.7 197 55-268 23-219 (605)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 4.4E-19 1.5E-23 140.1 15.1 153 57-213 15-168 (220)
104 3e6j_A Variable lymphocyte rec 99.8 7.2E-19 2.5E-23 139.7 15.9 154 79-237 21-174 (229)
105 1jl5_A Outer protein YOPM; leu 99.8 8.1E-19 2.8E-23 153.1 16.4 98 53-163 173-270 (454)
106 1jl5_A Outer protein YOPM; leu 99.8 2.5E-18 8.4E-23 150.1 19.3 195 50-269 150-382 (454)
107 1z7x_W Ribonuclease inhibitor; 99.8 3.8E-22 1.3E-26 174.6 -5.4 41 221-261 369-413 (461)
108 1z7x_W Ribonuclease inhibitor; 99.8 1.9E-21 6.5E-26 170.2 -3.1 158 54-211 86-269 (461)
109 1xeu_A Internalin C; cellular 99.8 1.6E-19 5.6E-24 146.4 8.4 169 53-237 19-187 (263)
110 4ezg_A Putative uncharacterize 99.8 1.1E-18 3.6E-23 135.6 10.8 152 75-235 42-194 (197)
111 1xeu_A Internalin C; cellular 99.8 4.3E-19 1.5E-23 144.0 7.9 148 52-213 40-187 (263)
112 4b8c_D Glucose-repressible alc 99.8 2.7E-20 9.3E-25 171.0 -0.8 203 5-217 127-335 (727)
113 3cvr_A Invasion plasmid antige 99.8 3.1E-18 1.1E-22 152.6 12.4 167 53-245 80-253 (571)
114 1w8a_A SLIT protein; signaling 99.7 2.5E-17 8.5E-22 127.2 11.6 130 104-237 11-141 (192)
115 3sb4_A Hypothetical leucine ri 99.7 1.8E-17 6.3E-22 138.7 11.4 219 52-274 48-325 (329)
116 1dce_A Protein (RAB geranylger 99.7 2.2E-20 7.7E-25 166.9 -7.9 183 74-263 346-550 (567)
117 3sb4_A Hypothetical leucine ri 99.7 3.3E-17 1.1E-21 137.1 10.5 77 197-275 225-302 (329)
118 2ell_A Acidic leucine-rich nuc 99.7 3.6E-17 1.2E-21 123.5 9.2 133 126-261 25-162 (168)
119 2wfh_A SLIT homolog 2 protein 99.7 1.4E-16 4.7E-21 123.1 12.4 127 104-235 13-139 (193)
120 1dce_A Protein (RAB geranylger 99.7 3E-20 1E-24 166.0 -9.5 194 52-253 348-567 (567)
121 4b8c_D Glucose-repressible alc 99.7 2.2E-18 7.5E-23 158.4 2.5 182 68-260 215-405 (727)
122 1w8a_A SLIT protein; signaling 99.7 1.8E-16 6.2E-21 122.4 12.9 131 80-214 11-142 (192)
123 2o6r_A Variable lymphocyte rec 99.7 2.7E-16 9.3E-21 119.7 13.0 131 128-262 10-140 (177)
124 2ell_A Acidic leucine-rich nuc 99.7 2E-16 6.8E-21 119.4 11.7 131 77-210 24-159 (168)
125 2wfh_A SLIT homolog 2 protein 99.7 7.8E-16 2.7E-20 118.9 12.9 127 56-187 13-139 (193)
126 2je0_A Acidic leucine-rich nuc 99.7 1.2E-16 4.1E-21 118.2 6.2 126 54-206 18-148 (149)
127 2je0_A Acidic leucine-rich nuc 99.6 1.6E-16 5.6E-21 117.4 6.1 127 101-254 17-148 (149)
128 4fdw_A Leucine rich hypothetic 99.6 9.5E-15 3.2E-19 125.2 17.9 207 54-270 158-369 (401)
129 2o6r_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 113.2 13.1 127 57-187 11-137 (177)
130 1a9n_A U2A', U2A'; complex (nu 99.6 1.4E-15 4.7E-20 115.7 8.0 131 73-209 15-151 (176)
131 1a9n_A U2A', U2A'; complex (nu 99.6 9.5E-16 3.3E-20 116.6 6.4 106 151-260 43-154 (176)
132 4fdw_A Leucine rich hypothetic 99.6 3.6E-14 1.2E-18 121.6 16.9 208 54-273 136-348 (401)
133 3ogk_B Coronatine-insensitive 99.6 3.1E-17 1.1E-21 147.8 -3.5 212 54-266 294-533 (592)
134 3ogk_B Coronatine-insensitive 99.6 7.5E-17 2.6E-21 145.3 -2.6 102 55-158 140-251 (592)
135 1ds9_A Outer arm dynein; leuci 99.5 1.7E-17 5.8E-22 128.8 -7.6 130 76-211 17-153 (198)
136 3g39_A Variable lymphocyte rec 99.5 5.5E-14 1.9E-18 106.2 11.5 106 153-261 12-117 (170)
137 1ds9_A Outer arm dynein; leuci 99.5 4.2E-17 1.4E-21 126.6 -6.4 111 120-236 43-154 (198)
138 2r9u_A Variable lymphocyte rec 99.5 9.3E-14 3.2E-18 105.3 11.7 104 128-235 15-118 (174)
139 2p1m_B Transport inhibitor res 99.5 2.9E-16 9.8E-21 141.5 -7.5 212 52-265 288-525 (594)
140 3g39_A Variable lymphocyte rec 99.5 4.9E-13 1.7E-17 100.9 11.2 105 55-163 11-115 (170)
141 2p1m_B Transport inhibitor res 99.5 1.6E-15 5.6E-20 136.5 -3.0 109 52-160 104-221 (594)
142 2r9u_A Variable lymphocyte rec 99.4 7.9E-13 2.7E-17 100.1 11.2 104 56-163 15-118 (174)
143 3un9_A NLR family member X1; l 99.4 1.6E-15 5.6E-20 128.7 -5.8 162 77-238 72-255 (372)
144 3un9_A NLR family member X1; l 99.3 8.7E-15 3E-19 124.2 -6.4 142 125-266 101-259 (372)
145 2ifg_A High affinity nerve gro 99.3 5.5E-12 1.9E-16 106.1 10.1 103 129-235 12-116 (347)
146 2ifg_A High affinity nerve gro 99.2 2.4E-11 8.1E-16 102.2 9.3 101 59-163 14-116 (347)
147 4fs7_A Uncharacterized protein 99.2 6.1E-10 2.1E-14 95.2 15.2 100 169-273 292-391 (394)
148 4fs7_A Uncharacterized protein 99.1 2.9E-09 9.9E-14 91.0 14.9 214 48-274 157-370 (394)
149 4gt6_A Cell surface protein; l 99.1 5.8E-09 2E-13 89.2 16.8 100 170-273 261-360 (394)
150 2ra8_A Uncharacterized protein 99.1 9.1E-11 3.1E-15 98.9 4.4 201 52-257 106-341 (362)
151 2ra8_A Uncharacterized protein 98.9 1.5E-10 5E-15 97.6 1.7 187 77-267 107-328 (362)
152 4gt6_A Cell surface protein; l 98.9 9.4E-08 3.2E-12 81.6 18.2 115 141-259 256-370 (394)
153 4h09_A Hypothetical leucine ri 98.9 9.8E-08 3.3E-12 81.0 17.8 120 147-270 237-356 (379)
154 4h09_A Hypothetical leucine ri 98.6 1.8E-06 6E-11 73.2 15.2 148 96-249 212-359 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 4.7E-09 1.6E-13 80.0 -1.3 42 72-113 31-77 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 7.7E-09 2.6E-13 78.8 -0.7 115 147-261 33-166 (185)
157 3e4g_A ATP synthase subunit S, 98.4 9.1E-08 3.1E-12 71.6 1.8 34 151-184 62-95 (176)
158 3rw6_A Nuclear RNA export fact 98.4 1.1E-07 3.9E-12 76.2 2.2 64 100-164 169-234 (267)
159 3e4g_A ATP synthase subunit S, 98.2 3.1E-07 1.1E-11 68.6 1.7 83 54-136 62-150 (176)
160 3rw6_A Nuclear RNA export fact 98.2 1E-06 3.6E-11 70.6 4.0 40 148-187 168-209 (267)
161 3rfe_A Platelet glycoprotein I 97.4 0.00038 1.3E-08 49.3 6.4 36 199-234 32-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 3.5E-05 1.2E-09 58.6 -0.7 13 125-137 98-110 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 8.9E-05 3E-09 56.4 0.9 112 147-258 38-169 (197)
164 3rfe_A Platelet glycoprotein I 96.5 0.0067 2.3E-07 42.8 6.5 55 57-113 12-67 (130)
165 2lz0_A Uncharacterized protein 88.1 2.3 8E-05 28.0 6.9 49 63-112 6-54 (100)
166 2lz0_A Uncharacterized protein 73.8 5.4 0.00019 26.2 4.5 46 186-232 8-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.9e-39 Score=268.28 Aligned_cols=258 Identities=33% Similarity=0.543 Sum_probs=192.7
Q ss_pred CCChhHHHHHHHHHHhccCCCcccccCCCCCCCCCcc--eeeeeeCCCC--CeEEEEEcCCCCccc--cCcccccCCCCC
Q 041953 6 STITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCN--WTGVTCDVHS--HRVTVLNISRLNLTG--TIPSQLGNLSSL 79 (279)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~~~~~~--~~l~~L~l~~~~l~~--~~~~~~~~l~~L 79 (279)
.+.++|.++|++||+.+. +|. .+ .+|..+.++|. |.|+.|+... .+|+.|+++++.+.+ .+|..|.++++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l-~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GG-TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cc-cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 477899999999999996 665 55 89988888998 9999998643 689999999999998 889999999999
Q ss_pred CEEEccC-CcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953 80 QSLNLSC-NRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158 (279)
Q Consensus 80 ~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 158 (279)
++|++++ |.+.+.+|..|..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+ ..+++|++|+++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~ 157 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFD 157 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECC
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECc
Confidence 9999995 88888889999999999999999999988888888889999999999998876666655 778888888888
Q ss_pred cccccccCCccCCCCc-cCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc
Q 041953 159 QNMFHGGIPSALSNCA-YLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA 237 (279)
Q Consensus 159 ~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 237 (279)
+|.+++..|..+..++ .|+.|++++|.+.+..|..+..+. |+.|++++|.+++..|..+..+++|+.|++++|++++.
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 8888877777777776 778888887777766665555554 66666666655544455555445555555554444433
Q ss_pred CCccccCCCCCCeEEccCCcccccCccccccc
Q 041953 238 IPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269 (279)
Q Consensus 238 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 269 (279)
.+. +..+++|++|++++|.+++..|..+..+
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence 322 3344444444444444444444444433
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.1e-36 Score=253.85 Aligned_cols=265 Identities=22% Similarity=0.276 Sum_probs=238.4
Q ss_pred CCCChhHHHHHHHHHHhccCCCcccccCCC----CCCCCCcceeeeeeC--------CCCCeEEEEEcCCCCccccCccc
Q 041953 5 TSTITTDRDALLALKAHITHDPTNFFAKNW----NTSTPVCNWTGVTCD--------VHSHRVTVLNISRLNLTGTIPSQ 72 (279)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w----~~~~~~c~~~~~~~~--------~~~~~l~~L~l~~~~l~~~~~~~ 72 (279)
.....+|..+|+.||..+..++..|. ..| ....++|.|.|+.|. ....+++.|+++++.++ .+|..
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~-~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWH-SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHH-HHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred cccCchHHHHHHHHHHhccCCchhhh-hhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 44567899999999999877888888 888 567799999999995 23468999999999998 67888
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhh-------
Q 041953 73 LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANI------- 145 (279)
Q Consensus 73 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------- 145 (279)
+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 888999999999999999 88999999999999999999999 789999999999999999988877888765
Q ss_pred -hcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCC
Q 041953 146 -CSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAEL 224 (279)
Q Consensus 146 -~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 224 (279)
+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.+ .|..+..+++|+.|++++|.+.+.+|..+..+++|
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 235999999999999998 888889999999999999999994 66678899999999999999988999999999999
Q ss_pred CEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccccc
Q 041953 225 ELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275 (279)
Q Consensus 225 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 275 (279)
++|++++|++.+.+|..+.++++|+.|++++|++.+.+|+.++.++.+..+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 999999999999999999999999999999999999999999999876543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.3e-34 Score=263.46 Aligned_cols=261 Identities=28% Similarity=0.446 Sum_probs=211.6
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCcccccCCCCCCCCCcceeeeeeCCCCCeEEEEEcCCCCcccc---Cc--------
Q 041953 2 TANTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGT---IP-------- 70 (279)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~---~~-------- 70 (279)
++.+...++|++||++||+.+. ||. .+ .+|..+.++|.|.|+.|+ ..+|+.|+++++.+.+. ++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~-~~~-~l-~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLP-DKN-LL-PDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCS-CTT-SS-TTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred CccccCCHHHHHHHHHHHhhCC-Ccc-cc-cCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence 3445557889999999999998 887 66 899888899999999998 46999999999988765 33
Q ss_pred ---------------ccccCCCCCCEEEccCCcccCCCCc--cccCCCCCcEEEcccCcccccCCccC-CCCCCCcEEEe
Q 041953 71 ---------------SQLGNLSSLQSLNLSCNRLSGSIPS--AIFTTYTLKYVSFRKNQLSGAFPSFA-FNTSSLQYLDF 132 (279)
Q Consensus 71 ---------------~~~~~l~~L~~L~l~~~~i~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l 132 (279)
..|..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+ ..+++|++|++
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 4677778888888888888777777 78888888888888888876666654 67888888888
Q ss_pred eccccccccChhh--hcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccc
Q 041953 133 GFNTLSGEIPANI--CSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL 210 (279)
Q Consensus 133 ~~n~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 210 (279)
++|.+.+..+... +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..|. +..+++|++|++++|.+
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence 8888875544432 4778889999998888875544 37788899999999998876666 88899999999999999
Q ss_pred ccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccc-ccc
Q 041953 211 QGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL-LFS 272 (279)
Q Consensus 211 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~ 272 (279)
++..|..+..+++|++|++++|++.+..|.. .+++|++|++++|.+++.+|..+... +.+
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred CCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 8888888999999999999999998777754 78899999999999998888777654 443
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.5e-34 Score=258.09 Aligned_cols=247 Identities=20% Similarity=0.290 Sum_probs=186.1
Q ss_pred CCChhHHHHHHHHHHhccCCCcccccC-------CCCCCCCCcce---eeeeeCCCCCeEEEEEcCCCCccccCcccccC
Q 041953 6 STITTDRDALLALKAHITHDPTNFFAK-------NWNTSTPVCNW---TGVTCDVHSHRVTVLNISRLNLTGTIPSQLGN 75 (279)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~w~~~~~~c~~---~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~ 75 (279)
+....|++||.+++.++. ++.|.... +|+.+.++|.| .|+.|+.. .+|+.|+|+++++.+.+|..+++
T Consensus 26 ~~~~~d~~aL~~~~~~~~-~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALN-GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp CHHHHHHHHHHHHHHHTT-GGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGG
T ss_pred hhHHHHHHHHHHHHHHcC-CCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhc
Confidence 344579999999999986 55444323 79999999999 99999866 58999999999999999999999
Q ss_pred CCCCCEEEccCCcc------------------------------------------------------------------
Q 041953 76 LSSLQSLNLSCNRL------------------------------------------------------------------ 89 (279)
Q Consensus 76 l~~L~~L~l~~~~i------------------------------------------------------------------ 89 (279)
+++|+.|++++|.+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999988843
Q ss_pred ------------cCCCCccccCCCCCcEEEcccCccccc-----------------CCccCC--CCCCCcEEEeeccccc
Q 041953 90 ------------SGSIPSAIFTTYTLKYVSFRKNQLSGA-----------------FPSFAF--NTSSLQYLDFGFNTLS 138 (279)
Q Consensus 90 ------------~~~~~~~~~~~~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~ 138 (279)
++ +|..+..+++|++|++++|.+.+. +|..+. .+++|++|++++|.+.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 23 677788899999999999998864 888888 8999999999999888
Q ss_pred cccChhhhcCCCCCcEEEeeccc-ccc-cCCccCCCC------ccCcEEeccCCcccccCCc--ccCCCCCccEEEccCc
Q 041953 139 GEIPANICSNLPFLEYLALSQNM-FHG-GIPSALSNC------AYLQRLGLSSNDFSGVVPK--EICNLTKLKGLYLGGN 208 (279)
Q Consensus 139 ~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~~~~L~~L~l~~n 208 (279)
+.+|..+ .++++|++|++++|. +++ .+|..+..+ ++|++|++++|.+. .+|. .+..+++|+.|++++|
T Consensus 263 ~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 263 TKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp SSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred ccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 7777665 778888888888887 766 566655554 67777777777776 5665 6666777777777777
Q ss_pred ccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCC-CCeEEccCCccc
Q 041953 209 RLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTG-LGILQLSDNFLT 259 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~-L~~L~l~~n~l~ 259 (279)
.+++.+| .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence 6665555 5555555666666655555 44545555555 555555555555
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=2.9e-32 Score=253.03 Aligned_cols=258 Identities=21% Similarity=0.261 Sum_probs=210.0
Q ss_pred CCCCChhHHHHHHHHHHhccCCCcccccCCCCCCCC-Ccce------------eeeeeCCCCCeEEEEEcCCCCccccCc
Q 041953 4 NTSTITTDRDALLALKAHITHDPTNFFAKNWNTSTP-VCNW------------TGVTCDVHSHRVTVLNISRLNLTGTIP 70 (279)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~-~c~~------------~~~~~~~~~~~l~~L~l~~~~l~~~~~ 70 (279)
.+++..+|.+||++||..+. +|.|....+|.+..+ .|.| .|+.|+.. .+|+.|+|+++++.+.+|
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~-~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip 340 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALD-GKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVP 340 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-GGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEEC
T ss_pred ccccchHHHHHHHHHHHHcC-CCCCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCc
Confidence 34456789999999999996 663323122322222 3999 99999874 589999999999999999
Q ss_pred ccccCCCCCCEEEc-cCCcccCC---------------------------------------------------------
Q 041953 71 SQLGNLSSLQSLNL-SCNRLSGS--------------------------------------------------------- 92 (279)
Q Consensus 71 ~~~~~l~~L~~L~l-~~~~i~~~--------------------------------------------------------- 92 (279)
+.|+++++|+.|++ ++|.+.+.
T Consensus 341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 99999999999999 66644322
Q ss_pred -------------------CCccccCCCCCcEEEcccCcccc-----------------cCCccCC--CCCCCcEEEeec
Q 041953 93 -------------------IPSAIFTTYTLKYVSFRKNQLSG-----------------AFPSFAF--NTSSLQYLDFGF 134 (279)
Q Consensus 93 -------------------~~~~~~~~~~L~~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~l~~ 134 (279)
+|..+..+++|++|++++|.+.+ .+|..+. .+++|++|++++
T Consensus 421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 67788999999999999999997 3888887 999999999999
Q ss_pred cccccccChhhhcCCCCCcEEEeeccc-ccc-cCCccCCCC-------ccCcEEeccCCcccccCCc--ccCCCCCccEE
Q 041953 135 NTLSGEIPANICSNLPFLEYLALSQNM-FHG-GIPSALSNC-------AYLQRLGLSSNDFSGVVPK--EICNLTKLKGL 203 (279)
Q Consensus 135 n~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~l~~l-------~~L~~L~l~~n~~~~~~~~--~l~~~~~L~~L 203 (279)
|.+.+.+|..+ .++++|++|++++|. +++ .+|..+..+ ++|+.|++++|.+. .+|. .+..+++|+.|
T Consensus 501 N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 501 CPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578 (876)
T ss_dssp CTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred CCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence 99887888665 789999999999998 776 567655444 48999999999988 7777 78889999999
Q ss_pred EccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCC-CCeEEccCCcccccCccccccc
Q 041953 204 YLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTG-LGILQLSDNFLTGITPSSIYKL 269 (279)
Q Consensus 204 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~ 269 (279)
++++|.++ .+| .+..+++|+.|++++|++. .+|..+..+++ |+.|++++|.++. +|..+...
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~ 641 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK 641 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTT
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-Cchhhhcc
Confidence 99999988 777 8888899999999999988 77778888888 9999999998884 45555443
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.1e-31 Score=218.56 Aligned_cols=219 Identities=26% Similarity=0.353 Sum_probs=199.9
Q ss_pred CCCeEEEEEcCC-CCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953 51 HSHRVTVLNISR-LNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129 (279)
Q Consensus 51 ~~~~l~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 129 (279)
..+++++|++++ |.+.+.+|..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 456899999995 8999899999999999999999999999889999999999999999999999889999999999999
Q ss_pred EEeeccccccccChhhhcCCC-CCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCc
Q 041953 130 LDFGFNTLSGEIPANICSNLP-FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208 (279)
Q Consensus 130 L~l~~n~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 208 (279)
|++++|++.+.+|..+ ..++ +|++|++++|.+.+..|..+..+. |+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 154 L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred EECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 9999999987888777 6676 999999999999988999998887 999999999999888999999999999999999
Q ss_pred ccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953 209 RLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
.+++..+. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.. ..++.+.
T Consensus 232 ~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~ 294 (313)
T 1ogq_A 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294 (313)
T ss_dssp EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSC
T ss_pred ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccC
Confidence 99866554 788899999999999999899999999999999999999999988865 5554443
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=7.1e-30 Score=236.74 Aligned_cols=133 Identities=40% Similarity=0.585 Sum_probs=62.1
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
+++++|++++|.+++..|..|..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 34555555555554444444554555555555555444444444444444444444444444444444444444444444
Q ss_pred eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcc
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDF 186 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 186 (279)
++|++.+.+|..+ ..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 498 ~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 498 SNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCCcCChHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 4444443333332 3444444444444444444444444444444444444433
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.2e-29 Score=210.94 Aligned_cols=231 Identities=22% Similarity=0.297 Sum_probs=187.9
Q ss_pred CCCcceeeeeeCCC---------CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCC--CCccccCCCCCcEE
Q 041953 38 TPVCNWTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGS--IPSAIFTTYTLKYV 106 (279)
Q Consensus 38 ~~~c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L 106 (279)
...|.|.++.|... .+++++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|
T Consensus 4 ~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred CCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 45688988888642 25799999999999866666689999999999999998732 25667778899999
Q ss_pred EcccCcccccCCccCCCCCCCcEEEeeccccccccCh-hhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCc
Q 041953 107 SFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSND 185 (279)
Q Consensus 107 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 185 (279)
++++|.+. .++..+..+++|++|++++|.+. .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 84 ~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp ECCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred ECCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 99999887 45666778889999999998887 4443 455788889999998888887777778888888899998888
Q ss_pred ccc-cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcc
Q 041953 186 FSG-VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPS 264 (279)
Q Consensus 186 ~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 264 (279)
+.+ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..|.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 875 4677788888888888888888877778888888888888888888877666788888888888888888888887
Q ss_pred cccccc
Q 041953 265 SIYKLL 270 (279)
Q Consensus 265 ~~~~~~ 270 (279)
.+..++
T Consensus 242 ~~~~~~ 247 (306)
T 2z66_A 242 ELQHFP 247 (306)
T ss_dssp SCCCCC
T ss_pred HHHhhh
Confidence 777664
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1e-28 Score=201.71 Aligned_cols=219 Identities=24% Similarity=0.304 Sum_probs=191.8
Q ss_pred CCCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC
Q 041953 38 TPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF 117 (279)
Q Consensus 38 ~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 117 (279)
.+.|.|.|..|.... ..+.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNN-NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEET-TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCC-CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 477999998886432 4678999999998 4665554 68999999999999766678999999999999999998665
Q ss_pred CccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCC
Q 041953 118 PSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNL 197 (279)
Q Consensus 118 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~ 197 (279)
+..+..+++|++|++++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 566788999999999999998 7887777899999999999999997777788999999999999999997766778899
Q ss_pred CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953 198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
++|+.|++++|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 9999999999999977777789999999999999999977777899999999999999998654
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.5e-28 Score=202.14 Aligned_cols=211 Identities=21% Similarity=0.196 Sum_probs=189.6
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCc-ccccCCccCCCCCCCcEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ-LSGAFPSFAFNTSSLQYL 130 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L 130 (279)
.+++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4589999999999998888889999999999999999997778899999999999999997 776667889999999999
Q ss_pred EeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccc
Q 041953 131 DFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL 210 (279)
Q Consensus 131 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 210 (279)
++++|.+. .++...+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 111 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 99999998 66556668899999999999999866667789999999999999999976677788999999999999999
Q ss_pred ccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953 211 QGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP 263 (279)
Q Consensus 211 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (279)
++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 98889999999999999999999997777789999999999999999876433
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.4e-28 Score=213.63 Aligned_cols=229 Identities=19% Similarity=0.202 Sum_probs=197.4
Q ss_pred eeeeeeCCC---------CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcc
Q 041953 43 WTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113 (279)
Q Consensus 43 ~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~ 113 (279)
|..+.|... .+++++|++++|.++++.+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 456677532 25799999999999988899999999999999999999977788999999999999999999
Q ss_pred cccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecc-cccccCCccCCCCccCcEEeccCCcccccCCc
Q 041953 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN-MFHGGIPSALSNCAYLQRLGLSSNDFSGVVPK 192 (279)
Q Consensus 114 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 192 (279)
....+..+..+++|++|++++|.+. .++...|.++++|++|++++| .+....+..+..+++|+.|++++|.+.+. |
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 9666677889999999999999998 888877889999999999984 45434445688899999999999998843 3
Q ss_pred ccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccc
Q 041953 193 EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFS 272 (279)
Q Consensus 193 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 272 (279)
.+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+.++++|+.|++++|.+++.++..+..++++
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 47788899999999999988888889999999999999999988888889999999999999999999888887777655
Q ss_pred cc
Q 041953 273 IK 274 (279)
Q Consensus 273 ~~ 274 (279)
..
T Consensus 293 ~~ 294 (452)
T 3zyi_A 293 VE 294 (452)
T ss_dssp CE
T ss_pred CE
Confidence 43
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.2e-28 Score=209.92 Aligned_cols=229 Identities=22% Similarity=0.223 Sum_probs=195.2
Q ss_pred eeeeeeCCC---------CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcc
Q 041953 43 WTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113 (279)
Q Consensus 43 ~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~ 113 (279)
+..+.|... .+.++.|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 456677531 34689999999999988889999999999999999999877778899999999999999999
Q ss_pred cccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecc-cccccCCccCCCCccCcEEeccCCcccccCCc
Q 041953 114 SGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQN-MFHGGIPSALSNCAYLQRLGLSSNDFSGVVPK 192 (279)
Q Consensus 114 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 192 (279)
....+..+..+++|++|++++|.+. .++...|..+++|++|++++| .+....+..+..+++|++|++++|.+. .+|
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~- 201 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP- 201 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-
T ss_pred CeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-
Confidence 9666667899999999999999997 788777789999999999984 444344457888999999999999988 344
Q ss_pred ccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccc
Q 041953 193 EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFS 272 (279)
Q Consensus 193 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 272 (279)
.+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..|.++++|+.|++++|.+++.++..+..++.+
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 47788899999999999988888889999999999999999988888889999999999999999999888887777655
Q ss_pred cc
Q 041953 273 IK 274 (279)
Q Consensus 273 ~~ 274 (279)
..
T Consensus 282 ~~ 283 (440)
T 3zyj_A 282 ER 283 (440)
T ss_dssp CE
T ss_pred CE
Confidence 43
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=8.2e-28 Score=210.30 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=72.8
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCC-CccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSI-PSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
+++++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45667777777666665666666666666666666654332 34556666666666666666555555555566666666
Q ss_pred eeccccccccCh-hhhcCCCCCcEEEeecccccccCCcc-CCCCccCcEEeccCCcc
Q 041953 132 FGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPSA-LSNCAYLQRLGLSSNDF 186 (279)
Q Consensus 132 l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~ 186 (279)
+++|.+.+..+. ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 666555432222 12344555555555555544333332 34444444444444433
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=7.1e-28 Score=210.72 Aligned_cols=122 Identities=25% Similarity=0.248 Sum_probs=74.8
Q ss_pred CcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccC
Q 041953 152 LEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSE 231 (279)
Q Consensus 152 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 231 (279)
|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 33344444444333444555566666666666666655566666666666666666666655556666666666777766
Q ss_pred CcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953 232 NELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 232 n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
|++++..|..+.++++|++|++++|.+++.++..+..++++.
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 666666666666666777777777776666665555554443
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.1e-29 Score=211.70 Aligned_cols=202 Identities=20% Similarity=0.248 Sum_probs=145.9
Q ss_pred CCCCCCCCCcceeeeeeCC-----------CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCC
Q 041953 32 KNWNTSTPVCNWTGVTCDV-----------HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTT 100 (279)
Q Consensus 32 ~~w~~~~~~c~~~~~~~~~-----------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~ 100 (279)
..|.+....|.|.++ |+. -.+++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+
T Consensus 21 ~~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 21 ESSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp ------CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cCCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence 456666788888876 531 12478999999999987777789999999999999999987777788899
Q ss_pred CCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccCh-hhhcCCCCCcEEEeecc-cccccCCccCCCCccCcE
Q 041953 101 YTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPA-NICSNLPFLEYLALSQN-MFHGGIPSALSNCAYLQR 178 (279)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~ 178 (279)
++|++|++++|.+....+..+..+++|++|++++|++. .++. ..+..+++|++|++++| .+....+..+..+++|++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 99999999999988544444788899999999999887 6666 55678889999999888 466555677888888888
Q ss_pred EeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCc
Q 041953 179 LGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235 (279)
Q Consensus 179 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 235 (279)
|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 888888888777777777777777777766654222112222344444444444443
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=7.8e-28 Score=201.73 Aligned_cols=208 Identities=20% Similarity=0.262 Sum_probs=189.6
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCC--------
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFN-------- 123 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-------- 123 (279)
++++++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 568999999999999 78999999999999999999998 78999999999999999999888788877654
Q ss_pred -CCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccE
Q 041953 124 -TSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKG 202 (279)
Q Consensus 124 -l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 202 (279)
+++|++|++++|.+. .+|..+ ..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred cCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 999999999999998 888775 88999999999999998 56778999999999999999999899999999999999
Q ss_pred EEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcc
Q 041953 203 LYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPS 264 (279)
Q Consensus 203 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 264 (279)
|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.+++..+.+......
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC----
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhh
Confidence 99999999889999999999999999999999999999999999999999998877665443
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.1e-27 Score=194.34 Aligned_cols=215 Identities=21% Similarity=0.216 Sum_probs=190.7
Q ss_pred EEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953 56 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN 135 (279)
Q Consensus 56 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 135 (279)
+.++.++++++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 57788888887 455444 478999999999999777778999999999999999999777889999999999999999
Q ss_pred c-cccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccccc
Q 041953 136 T-LSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEI 214 (279)
Q Consensus 136 ~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 214 (279)
. +. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 7 65 776666689999999999999999777888999999999999999999777777899999999999999998776
Q ss_pred CccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953 215 PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274 (279)
Q Consensus 215 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 274 (279)
+..+..+++|+.|++++|++++..|..+.++++|+.|++++|.+++.++..+..++.+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 677999999999999999999888999999999999999999999998888888766653
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=5.6e-27 Score=196.94 Aligned_cols=227 Identities=22% Similarity=0.266 Sum_probs=181.3
Q ss_pred CCCcceeeeeeCCC---------CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEc
Q 041953 38 TPVCNWTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSF 108 (279)
Q Consensus 38 ~~~c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 108 (279)
...|.|..+.|... .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++
T Consensus 30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 34577888888532 357999999999999888889999999999999999999777889999999999999
Q ss_pred ccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccc--cCCccCCCC-------------
Q 041953 109 RKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG--GIPSALSNC------------- 173 (279)
Q Consensus 109 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l------------- 173 (279)
++|.+. .+|..+. ++|++|++++|.+. .++...+..+++|++|++++|.+.. ..+..+..+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC
Confidence 999988 5565554 78999999999887 7777767888899999998887752 333333332
Q ss_pred -------ccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCC
Q 041953 174 -------AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLT 246 (279)
Q Consensus 174 -------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 246 (279)
++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..++
T Consensus 186 ~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence 35666777777777666677778888888888888888766667888888888888888887 6677788888
Q ss_pred CCCeEEccCCcccccCccccccc
Q 041953 247 GLGILQLSDNFLTGITPSSIYKL 269 (279)
Q Consensus 247 ~L~~L~l~~n~l~~~~~~~~~~~ 269 (279)
+|+.|++++|++++..+..|+..
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCS
T ss_pred cCCEEECCCCCCCccChhHcccc
Confidence 88888888888888877777654
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.2e-26 Score=194.75 Aligned_cols=227 Identities=21% Similarity=0.252 Sum_probs=170.0
Q ss_pred CCCcceeeeeeCC---------CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEc
Q 041953 38 TPVCNWTGVTCDV---------HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSF 108 (279)
Q Consensus 38 ~~~c~~~~~~~~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 108 (279)
...|.|..+.|.. -.+.+++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3567788888753 2357899999999999877778999999999999999999777889999999999999
Q ss_pred ccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccc--cCCccCCCC-------------
Q 041953 109 RKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG--GIPSALSNC------------- 173 (279)
Q Consensus 109 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l------------- 173 (279)
++|.+. .+|..+. ++|++|++++|.+. .++...+.++++|++|++++|.+.. ..+..+..+
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 999987 4555443 57777777777776 5555555666666666666665532 333334444
Q ss_pred --------ccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCC
Q 041953 174 --------AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNL 245 (279)
Q Consensus 174 --------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 245 (279)
++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+
T Consensus 184 ~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 184 TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 34555666666666555667777788888888888887666667777888888888888887 667778888
Q ss_pred CCCCeEEccCCcccccCccccccc
Q 041953 246 TGLGILQLSDNFLTGITPSSIYKL 269 (279)
Q Consensus 246 ~~L~~L~l~~n~l~~~~~~~~~~~ 269 (279)
++|++|++++|+++++.+..|+..
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCS
T ss_pred CCcCEEECCCCcCCccChhhcCCc
Confidence 888888888888888877777544
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6.1e-27 Score=204.03 Aligned_cols=208 Identities=25% Similarity=0.251 Sum_probs=190.1
Q ss_pred CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953 50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 129 (279)
..+++|++|++++|.+.++.+..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++
T Consensus 85 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 45678999999999999888899999999999999999999666668999999999999999999776778999999999
Q ss_pred EEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcc
Q 041953 130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNR 209 (279)
Q Consensus 130 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 209 (279)
|++++|.....++...|.++++|++|++++|.++ .+| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 9999966555888888899999999999999998 555 58889999999999999998889999999999999999999
Q ss_pred cccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc
Q 041953 210 LQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT 259 (279)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~ 259 (279)
+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 99888899999999999999999999888888999999999999999875
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=5.3e-27 Score=206.42 Aligned_cols=224 Identities=21% Similarity=0.154 Sum_probs=136.3
Q ss_pred CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEE
Q 041953 51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYL 130 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 130 (279)
.+++|++|++++|.+++..|..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 44566677777766666666666666666666666666664444445566666666666666554444445555555555
Q ss_pred Eeecccccc-----------------------ccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccC----
Q 041953 131 DFGFNTLSG-----------------------EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS---- 183 (279)
Q Consensus 131 ~l~~n~~~~-----------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~---- 183 (279)
++++|.+.. .++...+.++++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 555554431 34444344555555555555554433333444444444444433
Q ss_pred --------------------CcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCcccc
Q 041953 184 --------------------NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWG 243 (279)
Q Consensus 184 --------------------n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 243 (279)
|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+.
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 333322223455666777777777777766666677777888888888888777777788
Q ss_pred CCCCCCeEEccCCcccccCcccccccccccc
Q 041953 244 NLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274 (279)
Q Consensus 244 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 274 (279)
++++|+.|++++|.++++.+..|..++++..
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 8888888888888888877777776655543
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=4.5e-27 Score=206.93 Aligned_cols=220 Identities=19% Similarity=0.189 Sum_probs=163.7
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
+.++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57899999999999888899999999999999999999878899999999999999999999665667889999999999
Q ss_pred eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG 212 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 212 (279)
++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 112 s~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 999998 5555556889999999999998887777778888888888888887765444445555555555555544433
Q ss_pred ccCc------------------------------------------------cCCCCCCCCEEeccCCcCcccCCccccC
Q 041953 213 EIPR------------------------------------------------ESGNLAELELMSLSENELQGAIPREWGN 244 (279)
Q Consensus 213 ~~~~------------------------------------------------~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 244 (279)
..+. .+..+++|+.|++++|++++..+..+.+
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 2222 2344455555555555555454555556
Q ss_pred CCCCCeEEccCCcccccCccccccccccc
Q 041953 245 LTGLGILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 245 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
+++|+.|++++|.+++..|..|..++++.
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred cccCCEEECCCCccceECHHHhcCcccCC
Confidence 66666666666666666666665554443
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=9.8e-27 Score=203.41 Aligned_cols=209 Identities=24% Similarity=0.225 Sum_probs=190.0
Q ss_pred CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953 50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 129 (279)
..+++|++|++++|.++++.+..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++
T Consensus 96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence 35678999999999999888899999999999999999999666677899999999999999999766678999999999
Q ss_pred EEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcc
Q 041953 130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNR 209 (279)
Q Consensus 130 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 209 (279)
|++++|...+.++...|.++++|++|++++|.++ .+| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred EeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 9999965555888888899999999999999998 444 58889999999999999998889999999999999999999
Q ss_pred cccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccc
Q 041953 210 LQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTG 260 (279)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~ 260 (279)
+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.-
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 998888999999999999999999997777888999999999999998753
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=6.4e-27 Score=200.81 Aligned_cols=134 Identities=22% Similarity=0.206 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
.+++.++++++.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 34555555555555433333455555555555555555444445555555555555555555444444555555555555
Q ss_pred eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS 187 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (279)
++|.+. .+|...|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 555554 455444455555555555555555444444555555555555555443
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=7.1e-27 Score=211.00 Aligned_cols=205 Identities=22% Similarity=0.194 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG 133 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 133 (279)
.++.++++++.++...+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 44555566655554444445555666666666666554444455556666666666666555444455555666666666
Q ss_pred ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccC-----------------------
Q 041953 134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVV----------------------- 190 (279)
Q Consensus 134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~----------------------- 190 (279)
+|.+. .+|...|.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..
T Consensus 132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 66555 555554455556666666665555444445555555555555555444221
Q ss_pred ------------------------------------CcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcC
Q 041953 191 ------------------------------------PKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234 (279)
Q Consensus 191 ------------------------------------~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 234 (279)
+..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 12233445555555555555555555555555555555555555
Q ss_pred cccCCccccCCCCCCeEEccCCcccc
Q 041953 235 QGAIPREWGNLTGLGILQLSDNFLTG 260 (279)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~n~l~~ 260 (279)
++ +|..+..+++|+.|++++|.+++
T Consensus 291 ~~-l~~~~~~l~~L~~L~Ls~N~l~~ 315 (597)
T 3oja_B 291 VA-LNLYGQPIPTLKVLDLSHNHLLH 315 (597)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCCC
T ss_pred CC-CCcccccCCCCcEEECCCCCCCc
Confidence 53 33344445555555555555554
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-26 Score=192.87 Aligned_cols=211 Identities=21% Similarity=0.235 Sum_probs=186.5
Q ss_pred CCCCeEEEEEcCCCCcccc--CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCC
Q 041953 50 VHSHRVTVLNISRLNLTGT--IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSS 126 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~ 126 (279)
...++|++|++++|.++.. .+..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence 3567899999999998743 3667778999999999999998 677789999999999999999985544 57889999
Q ss_pred CcEEEeeccccccccChhhhcCCCCCcEEEeecccccc-cCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEc
Q 041953 127 LQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG-GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYL 205 (279)
Q Consensus 127 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 205 (279)
|++|++++|.+. ..+...+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 128 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 128 LIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp CCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 999999999997 5555556889999999999999986 57888999999999999999999888889999999999999
Q ss_pred cCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCC-CCCeEEccCCcccccC
Q 041953 206 GGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLT-GLGILQLSDNFLTGIT 262 (279)
Q Consensus 206 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~ 262 (279)
++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|+.|++++|++...-
T Consensus 207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 99999877777889999999999999999988898999985 9999999999998753
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=4.3e-26 Score=191.41 Aligned_cols=215 Identities=21% Similarity=0.276 Sum_probs=162.7
Q ss_pred CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC------------
Q 041953 50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF------------ 117 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~------------ 117 (279)
..++++++|++++|.+++..|..|..+++|++|++++|.+. .+|..+. ++|++|++++|.+....
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccE
Confidence 35678999999999998887889999999999999998887 4443332 45555555555554333
Q ss_pred --------------CccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccC
Q 041953 118 --------------PSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS 183 (279)
Q Consensus 118 --------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 183 (279)
+..+..+++|++|++++|.+. .+|... .++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 334444555555555555554 444433 26677777777777766678889999999999999
Q ss_pred CcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccC------CCCCCeEEccCCc
Q 041953 184 NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGN------LTGLGILQLSDNF 257 (279)
Q Consensus 184 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------~~~L~~L~l~~n~ 257 (279)
|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.++.+++++|+
T Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 9999877778899999999999999998 78888999999999999999999776666643 4789999999999
Q ss_pred ccc--cCcccccccccc
Q 041953 258 LTG--ITPSSIYKLLFS 272 (279)
Q Consensus 258 l~~--~~~~~~~~~~~~ 272 (279)
+.. +.|..|..+..+
T Consensus 305 ~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 305 VQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp SCGGGSCGGGGTTCCCG
T ss_pred ccccccCccccccccce
Confidence 875 556666655443
No 28
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.3e-26 Score=189.71 Aligned_cols=209 Identities=22% Similarity=0.160 Sum_probs=182.5
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
+.+++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46999999999999877778999999999999999998767778999999999999999999777788999999999999
Q ss_pred eccccccccChhhhcCCCCCcEEEeeccccccc-CCccCCCCccCcEEeccCCcccccCCcccCCCCCcc----EEEccC
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGG-IPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLK----GLYLGG 207 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~----~L~l~~ 207 (279)
++|.+. .++...+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+..+.+|+ .+++++
T Consensus 108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999997 66665568899999999999999853 588999999999999999999877666776666666 899999
Q ss_pred cccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953 208 NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP 263 (279)
Q Consensus 208 n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (279)
|.+++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++...-+
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 999865555444 4589999999999997777778999999999999999997654
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1.9e-26 Score=208.56 Aligned_cols=219 Identities=20% Similarity=0.185 Sum_probs=134.5
Q ss_pred CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCc-cccCCCCCcEEEcccCcccccC--CccCCCCCCC
Q 041953 51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPS-AIFTTYTLKYVSFRKNQLSGAF--PSFAFNTSSL 127 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L 127 (279)
.++++++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 378 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTC
T ss_pred ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCC
Confidence 456788888888888877677777788888888888777644443 3667777777777777766443 5556666777
Q ss_pred cEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCc-cCCCCccCcEEeccCCcccccCCcccCCCCCccEEEcc
Q 041953 128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPS-ALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLG 206 (279)
Q Consensus 128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 206 (279)
++|++++|.+. .++...+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 379 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 379 QSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp CEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred CEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence 77777777665 33333345666666666666666544332 25556666666666666655555555555666666666
Q ss_pred Ccccccc---cCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccc
Q 041953 207 GNRLQGE---IPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270 (279)
Q Consensus 207 ~n~~~~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 270 (279)
+|.+++. .+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..++
T Consensus 458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred CCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 6655431 123345555555555555555555555555555555555555555555555555444
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=9.7e-26 Score=203.96 Aligned_cols=219 Identities=23% Similarity=0.205 Sum_probs=133.9
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCc-cCCCCCCCcEEEe
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPS-FAFNTSSLQYLDF 132 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l 132 (279)
++++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++. .+..+++|++|++
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 4444444444444 3344444444455555554444433344444455555555555544433332 2555566666666
Q ss_pred eccccccccC--hhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCc-ccCCCCCccEEEccCcc
Q 041953 133 GFNTLSGEIP--ANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPK-EICNLTKLKGLYLGGNR 209 (279)
Q Consensus 133 ~~n~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~ 209 (279)
++|.+. ... ...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.
T Consensus 358 ~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 358 SHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCccc-cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 666654 221 22235666677777766666655666666777777777777776655443 36667777777777777
Q ss_pred cccccCccCCCCCCCCEEeccCCcCcc---cCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953 210 LQGEIPRESGNLAELELMSLSENELQG---AIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274 (279)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~n~i~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 274 (279)
+.+..|..+..+++|++|++++|++.+ ..+..+..+++|+.|++++|.+++.+|..+..++.+..
T Consensus 437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 776667777777888888888887765 22345777888888888888888888877777766553
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.1e-25 Score=193.21 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=83.7
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
.+++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 45788888888888776677788888888888888888766667777888888888888887744334457788888888
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHG 164 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 164 (279)
+++|.+. .++...+..+++|++|++++|.+++
T Consensus 148 L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 148 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCccC-ccChhhccCCCCCCEEECCCCcCCc
Confidence 8888876 5555555777777777777776653
No 32
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=7.9e-26 Score=184.73 Aligned_cols=209 Identities=22% Similarity=0.228 Sum_probs=183.3
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
.++++.|+++++.+.. + ..+..+++|++|++++|.+.+ ...+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4579999999999873 2 358889999999999999974 34788999999999999999977777788999999999
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 9999998 777776789999999999999999666667889999999999999999777777889999999999999999
Q ss_pred cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccc
Q 041953 212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFS 272 (279)
Q Consensus 212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 272 (279)
+..+..+..+++|+.|++++|++.+ .++.|+.+++..|.++|.+|.+++.+...
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 8777788999999999999998763 36688999999999999999998877543
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=195.76 Aligned_cols=214 Identities=19% Similarity=0.157 Sum_probs=178.2
Q ss_pred CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCCCc
Q 041953 50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSSLQ 128 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~ 128 (279)
...+++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+ ..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 456799999999999998888899999999999999999985554558899999999999999984333 3788999999
Q ss_pred EEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCc
Q 041953 129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208 (279)
Q Consensus 129 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 208 (279)
+|++++|.....++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 99999995333776666689999999999999999888899999999999999999987443333455789999999999
Q ss_pred cccccc-------------------------------CccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCc
Q 041953 209 RLQGEI-------------------------------PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNF 257 (279)
Q Consensus 209 ~~~~~~-------------------------------~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 257 (279)
.+++.. |..+..+++|+.|++++|+++...+..+..+++|+.|++++|+
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 887532 3345678899999999999984444446899999999999999
Q ss_pred ccccCc
Q 041953 258 LTGITP 263 (279)
Q Consensus 258 l~~~~~ 263 (279)
+.+..|
T Consensus 313 ~~~~~~ 318 (353)
T 2z80_A 313 WDCSCP 318 (353)
T ss_dssp BCCCHH
T ss_pred ccCcCC
Confidence 988754
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-25 Score=201.25 Aligned_cols=216 Identities=22% Similarity=0.258 Sum_probs=177.3
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 35789999999999888888899999999999999999877777788899999999999988855445568888999999
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccC---------------------------------------------
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGI--------------------------------------------- 166 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--------------------------------------------- 166 (279)
+++|.+. .++...+..+++|++|++++|.+.+..
T Consensus 154 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 232 (597)
T 3oja_B 154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232 (597)
T ss_dssp CCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred eeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence 9999887 555555577888888888877665321
Q ss_pred --------------CccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCC
Q 041953 167 --------------PSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232 (279)
Q Consensus 167 --------------~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 232 (279)
+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++ +|..+..+++|+.|+|++|
T Consensus 233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence 1234566789999999999998889999999999999999999985 5667778999999999999
Q ss_pred cCcccCCccccCCCCCCeEEccCCcccccCcccccccc
Q 041953 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270 (279)
Q Consensus 233 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 270 (279)
.+. .+|..+..+++|+.|++++|.+++.....+..+.
T Consensus 312 ~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~ 348 (597)
T 3oja_B 312 HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 348 (597)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCC
Confidence 998 6777788899999999999999888655554443
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.7e-26 Score=192.43 Aligned_cols=204 Identities=24% Similarity=0.203 Sum_probs=155.7
Q ss_pred CCeEEEEEcCCCCccccCcccc--cCCCCCCEEEccCCcccCCCCccccCC-----CCCcEEEcccCcccccCCccCCCC
Q 041953 52 SHRVTVLNISRLNLTGTIPSQL--GNLSSLQSLNLSCNRLSGSIPSAIFTT-----YTLKYVSFRKNQLSGAFPSFAFNT 124 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~l 124 (279)
.+++++|++++|.+++..|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5678888888888887777765 7888888888888888855 7767666 788888888888887766788888
Q ss_pred CCCcEEEeecccccccc--C-hhhhcCCCCCcEEEeecccccc---cCCccCCCCccCcEEeccCCcccccCC-cccCCC
Q 041953 125 SSLQYLDFGFNTLSGEI--P-ANICSNLPFLEYLALSQNMFHG---GIPSALSNCAYLQRLGLSSNDFSGVVP-KEICNL 197 (279)
Q Consensus 125 ~~L~~L~l~~n~~~~~~--~-~~~~~~~~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~ 197 (279)
++|++|++++|++.+.+ + ...+..+++|++|++++|.+++ .....+..+++|++|++++|.+.+..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 88888888888865432 2 2223678888888888888762 111234566788888888888886554 445567
Q ss_pred CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953 198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 88888888888887 6666665 7888888888888755 55 88888888888888888764
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=3.5e-25 Score=186.01 Aligned_cols=221 Identities=19% Similarity=0.216 Sum_probs=180.4
Q ss_pred CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953 50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 129 (279)
...+++++|++++|.+++..|..|..+++|++|++++|.+. .+|..+. ++|++|++++|.+....+..+..+++|++
T Consensus 75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence 45678999999999999888999999999999999999988 5555444 78899999998888555556788888888
Q ss_pred EEeecccccc-ccChhhhcCC--------------------CCCcEEEeecccccccCCccCCCCccCcEEeccCCcccc
Q 041953 130 LDFGFNTLSG-EIPANICSNL--------------------PFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG 188 (279)
Q Consensus 130 L~l~~n~~~~-~~~~~~~~~~--------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 188 (279)
|++++|.+.. ......+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 152 L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp EECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred EECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 8888887742 1222222222 467788888888876666788999999999999999998
Q ss_pred cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccC------CCCCCeEEccCCccc--c
Q 041953 189 VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGN------LTGLGILQLSDNFLT--G 260 (279)
Q Consensus 189 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------~~~L~~L~l~~n~l~--~ 260 (279)
..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+.. .+.|+.+++++|++. +
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 77778999999999999999998 78888999999999999999999776666654 367899999999998 7
Q ss_pred cCcccccccccccc
Q 041953 261 ITPSSIYKLLFSIK 274 (279)
Q Consensus 261 ~~~~~~~~~~~~~~ 274 (279)
..|..+..+..+..
T Consensus 311 ~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 311 VQPATFRCVTDRLA 324 (332)
T ss_dssp SCGGGGTTBCCSTT
T ss_pred cCcccccccchhhh
Confidence 77888877766554
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.5e-25 Score=205.38 Aligned_cols=220 Identities=23% Similarity=0.188 Sum_probs=144.4
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 45677777777776666666777777777777777776666666677777777777777766443345667777777777
Q ss_pred eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccC--CCCCccEEEcc----
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC--NLTKLKGLYLG---- 206 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~~~~L~~L~l~---- 206 (279)
++|.+. .++...|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+.|+++
T Consensus 105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 777665 55544446677777777777766655555666666666666666665543333221 22344444444
Q ss_pred -----------------------------------------------CcccccccCccCCCCC--CCCEEeccCCcCccc
Q 041953 207 -----------------------------------------------GNRLQGEIPRESGNLA--ELELMSLSENELQGA 237 (279)
Q Consensus 207 -----------------------------------------------~n~~~~~~~~~~~~~~--~L~~L~l~~n~i~~~ 237 (279)
+|.+.+..|..+..++ +|+.|++++|++++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 4444444444554443 388888888888877
Q ss_pred CCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953 238 IPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 238 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
.+..+..+++|+.|++++|.+.+..|.+++.++++.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence 777888888888888888888888887777765544
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.1e-26 Score=211.18 Aligned_cols=208 Identities=18% Similarity=0.292 Sum_probs=142.6
Q ss_pred CCCCeEEEEEcCCCCcccc-----------------Cccccc--CCCCCCEEEccCCcccCCCCccccCCCCCcEEEccc
Q 041953 50 VHSHRVTVLNISRLNLTGT-----------------IPSQLG--NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK 110 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 110 (279)
.+++++++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 3466888999999988875 788888 888999999999888888888888888888888888
Q ss_pred Cc-ccc-cCCccCCCC------CCCcEEEeeccccccccCh-hhhcCCCCCcEEEeecccccccCCccCCCCccCcEEec
Q 041953 111 NQ-LSG-AFPSFAFNT------SSLQYLDFGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGL 181 (279)
Q Consensus 111 n~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 181 (279)
|+ +.+ .+|..+..+ ++|++|++++|.+. .+|. ..+.++++|++|++++|.+.+.+| .+..+++|+.|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 87 776 566666554 77888888888777 6776 233677777777777777776666 6666666666666
Q ss_pred cCCcccccCCcccCCCCC-ccEEEccCcccccccCccCCCCC--CCCEEeccCCcCcccCCcccc-------CCCCCCeE
Q 041953 182 SSNDFSGVVPKEICNLTK-LKGLYLGGNRLQGEIPRESGNLA--ELELMSLSENELQGAIPREWG-------NLTGLGIL 251 (279)
Q Consensus 182 ~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~~~~~-------~~~~L~~L 251 (279)
++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+ +|+.|++++|++.+..|..+. .+++|+.|
T Consensus 361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 666666 55555666665 666666666665 4555444433 555555555555554444444 44445555
Q ss_pred EccCCccccc
Q 041953 252 QLSDNFLTGI 261 (279)
Q Consensus 252 ~l~~n~l~~~ 261 (279)
++++|.++++
T Consensus 439 ~Ls~N~l~~l 448 (636)
T 4eco_A 439 NLSNNQISKF 448 (636)
T ss_dssp ECCSSCCCSC
T ss_pred ECcCCccCcC
Confidence 5555555443
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=9.8e-25 Score=179.76 Aligned_cols=201 Identities=25% Similarity=0.217 Sum_probs=174.4
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
.++++.+++++++++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+.... .. ..+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-CC-CCCCcCCEEE
Confidence 457899999999998 4555453 68999999999998777788999999999999999998543 32 6889999999
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+++|.+. .+|..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++
T Consensus 84 Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 9999997 777655 78999999999999999666678999999999999999999777777888999999999999998
Q ss_pred cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccc
Q 041953 212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTG 260 (279)
Q Consensus 212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~ 260 (279)
...+..+..+++|+.|++++|+++ .+|..+...+.|+.+++++|++.-
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 666667788999999999999998 677778888999999999998864
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=4e-25 Score=206.90 Aligned_cols=222 Identities=19% Similarity=0.152 Sum_probs=121.1
Q ss_pred CCeEEEEEcCCCCccc-cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCcc--CCCCCCCc
Q 041953 52 SHRVTVLNISRLNLTG-TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSF--AFNTSSLQ 128 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~l~~L~ 128 (279)
+++|++|++++|...+ +.|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+.. +..+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 3445555555553322 22455555555555555555555445555555555555555555555433332 55555566
Q ss_pred EEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccC--------------------------CCC---------
Q 041953 129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL--------------------------SNC--------- 173 (279)
Q Consensus 129 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l--------------------------~~l--------- 173 (279)
+|++++|.+.+..+...+.++++|++|++++|.+.+..+..+ ..+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 666665555432232333555555555555554432222111 111
Q ss_pred -----------------------------------------------------------ccCcEEeccCCcccccCCccc
Q 041953 174 -----------------------------------------------------------AYLQRLGLSSNDFSGVVPKEI 194 (279)
Q Consensus 174 -----------------------------------------------------------~~L~~L~l~~n~~~~~~~~~l 194 (279)
++|+.|++++|.+.+..+..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 234444444444444444555
Q ss_pred CCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953 195 CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 195 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+.++++|+.|++++|.+.++.+..|..++++.
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 5566666666666666655566666666677777777766655566666667777777777776666666666555443
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=208.24 Aligned_cols=223 Identities=22% Similarity=0.186 Sum_probs=169.8
Q ss_pred CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCC-CccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953 51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSI-PSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 129 (279)
.++++++|++++|.+++..+..|.++++|++|++++|...+.+ |..|..+++|++|++++|.+.+..|..+..+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4568999999999999888999999999999999999655444 788999999999999999999888999999999999
Q ss_pred EEeeccccccccChh-hhcCCCCCcEEEeecccccccCC-ccCCCCccCcEEeccCCcccccCCcccCCC----------
Q 041953 130 LDFGFNTLSGEIPAN-ICSNLPFLEYLALSQNMFHGGIP-SALSNCAYLQRLGLSSNDFSGVVPKEICNL---------- 197 (279)
Q Consensus 130 L~l~~n~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~---------- 197 (279)
|++++|.+.+.++.. .+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999998555543 45899999999999999986544 578999999999999998764433222111
Q ss_pred --------------------------------------------------------------------------------
Q 041953 198 -------------------------------------------------------------------------------- 197 (279)
Q Consensus 198 -------------------------------------------------------------------------------- 197 (279)
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence
Q ss_pred ----CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953 198 ----TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 198 ----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+.++++|+.|++++|.+.+..|..+..++.+.
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 2344444444444444445556666667777777766666666666677777777777777766666666665544
No 42
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=7.7e-25 Score=175.46 Aligned_cols=189 Identities=17% Similarity=0.209 Sum_probs=96.4
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEEcccCc-ccccCCccCCCCCCCcEEEeec-cccccccChhhhcCCCCCcEE
Q 041953 78 SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ-LSGAFPSFAFNTSSLQYLDFGF-NTLSGEIPANICSNLPFLEYL 155 (279)
Q Consensus 78 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L 155 (279)
+|++|++++|.+.+..+..|..+++|++|++++|+ +....+..+..+++|++|++++ |.+. .++...|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 45555555555553333345555555555555554 4433333455555555555555 5554 4444444555555555
Q ss_pred EeecccccccCCccCCCCccCc---EEeccCC-cccccCCcccCCCCCcc-EEEccCcccccccCccCCCCCCCCEEecc
Q 041953 156 ALSQNMFHGGIPSALSNCAYLQ---RLGLSSN-DFSGVVPKEICNLTKLK-GLYLGGNRLQGEIPRESGNLAELELMSLS 230 (279)
Q Consensus 156 ~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 230 (279)
++++|.+++ +|. +..+++|+ .|++++| .+....+..+..+++|+ .+++++|.++...+..+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 555555542 333 44444554 5555555 55544444455555555 5555555555222222222 555555555
Q ss_pred CCc-CcccCCccccCC-CCCCeEEccCCcccccCcccccccc
Q 041953 231 ENE-LQGAIPREWGNL-TGLGILQLSDNFLTGITPSSIYKLL 270 (279)
Q Consensus 231 ~n~-i~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~ 270 (279)
+|+ +++..+..|.++ ++|+.|++++|+++++++..+..+.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~ 229 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK 229 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCS
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCc
Confidence 553 554444455555 5555555555555555444444443
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=2.8e-25 Score=200.98 Aligned_cols=195 Identities=24% Similarity=0.179 Sum_probs=115.6
Q ss_pred ccCCCCCCEEEccCCcccCC--CCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCC
Q 041953 73 LGNLSSLQSLNLSCNRLSGS--IPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLP 150 (279)
Q Consensus 73 ~~~l~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 150 (279)
+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+...+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 33455555555555555432 2455555666666666666655 34455556666666666666665333323445666
Q ss_pred CCcEEEeecccccccCCccCCCCccCcEEeccCCcccc-cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEec
Q 041953 151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG-VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSL 229 (279)
Q Consensus 151 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 229 (279)
+|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 66666666666665555666666666666666666654 24555666666666666666666555666666666666666
Q ss_pred cCCcCcccCCccccCCCCCCeEEccCCcccccCccccccc
Q 041953 230 SENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269 (279)
Q Consensus 230 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 269 (279)
++|++++..|..+..+++|+.|++++|+++++++ .+..+
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~-~~~~l 543 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG-ILQHF 543 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES-CGGGS
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH-hHhhh
Confidence 6666665556666666666666666666664433 24444
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=7.7e-25 Score=200.61 Aligned_cols=213 Identities=20% Similarity=0.173 Sum_probs=156.9
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCC-ccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIP-SAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
.++.|++++|.+++..|..|..+++|+.|++++|.+.+.++ ..|..+++|++|++++|++....+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 56677777777777777778888888888888888765444 56777888888888888877666667777777778777
Q ss_pred eccccc--cccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCC--------cccCCCCCccE
Q 041953 133 GFNTLS--GEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVP--------KEICNLTKLKG 202 (279)
Q Consensus 133 ~~n~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--------~~l~~~~~L~~ 202 (279)
++|.+. +.+|.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|+.
T Consensus 462 ~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 462 RRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp TTSCCBCTTCSSCT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred ccccccccccCCcc-cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 777664 233433 3677888888888888876666667778888888888887764321 23567778888
Q ss_pred EEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccc
Q 041953 203 LYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIY 267 (279)
Q Consensus 203 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 267 (279)
|++++|.++...+..+.++++|+.|++++|++++..+..|..+++|+.|++++|.+++..+..+.
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 88888888744445677888888888888888866666677888888888888888887776554
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=1.1e-24 Score=175.87 Aligned_cols=192 Identities=21% Similarity=0.271 Sum_probs=165.4
Q ss_pred CCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC
Q 041953 39 PVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP 118 (279)
Q Consensus 39 ~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 118 (279)
.++.|.|+.|.. ..+.++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 466799999953 4567899999998 5665554 689999999999998888889999999999999999998777
Q ss_pred ccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCC
Q 041953 119 SFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLT 198 (279)
Q Consensus 119 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~ 198 (279)
..+..+++|++|++++|.+. .++...|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 78899999999999999998 77777778999999999999999866666678899999999999999876666788899
Q ss_pred CccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc
Q 041953 199 KLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA 237 (279)
Q Consensus 199 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 237 (279)
+|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999999877777888899999999999998754
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4e-24 Score=174.42 Aligned_cols=194 Identities=26% Similarity=0.282 Sum_probs=171.7
Q ss_pred CCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEE
Q 041953 77 SSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLA 156 (279)
Q Consensus 77 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 156 (279)
...+.++++++.++ .+|..+. +++++|++++|.+....+..+..+++|++|++++|.+. .++...|..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 35789999999998 5666443 68999999999999766678999999999999999998 88888888999999999
Q ss_pred eecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcc
Q 041953 157 LSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQG 236 (279)
Q Consensus 157 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 236 (279)
+++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999986666778899999999999999998888888999999999999999987666778999999999999999997
Q ss_pred cCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953 237 AIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274 (279)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 274 (279)
..+..+.++++|+.|++++|.+++.++..+..++.+..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 77778999999999999999999998887877765543
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=7.1e-25 Score=198.28 Aligned_cols=210 Identities=20% Similarity=0.211 Sum_probs=187.3
Q ss_pred CCCeEEEEEcCCCCcccc--CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCCC
Q 041953 51 HSHRVTVLNISRLNLTGT--IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSSL 127 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L 127 (279)
..+++++|++++|.+++. .+..+..+++|++|++++|.+. ..|..+..+++|+.|++++|.+.+..+ ..+..+++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 467899999999998865 3788899999999999999998 567889999999999999999997766 678899999
Q ss_pred cEEEeeccccccccChhhhcCCCCCcEEEeecccccc-cCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEcc
Q 041953 128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG-GIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLG 206 (279)
Q Consensus 128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 206 (279)
++|++++|.+.+..+. .+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 427 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 9999999999844554 45899999999999999986 378889999999999999999998888899999999999999
Q ss_pred CcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCC-CCCeEEccCCcccccCc
Q 041953 207 GNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLT-GLGILQLSDNFLTGITP 263 (279)
Q Consensus 207 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~ 263 (279)
+|.+++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|++...-+
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999888999999999999999999998 6666688887 59999999999987544
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.2e-25 Score=195.29 Aligned_cols=195 Identities=23% Similarity=0.198 Sum_probs=118.9
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
.++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3478999999999988778888899999999999998875444 7888889999999888774321 25566666
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccC-CCCCccEEEccCccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEIC-NLTKLKGLYLGGNRL 210 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~~ 210 (279)
+++|.+. .++. ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+
T Consensus 106 L~~N~l~-~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNIS-RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCC-CEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCC-CCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 6666554 2222 2245555555555555544444555555555555555555544444443 455555555555555
Q ss_pred ccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccc
Q 041953 211 QGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTG 260 (279)
Q Consensus 211 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~ 260 (279)
++..+ ...+++|+.|+|++|.+++..+ .+..+++|+.|++++|.+++
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc
Confidence 43311 2234555555555555553322 35555555555555555554
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.6e-24 Score=177.36 Aligned_cols=211 Identities=21% Similarity=0.198 Sum_probs=176.7
Q ss_pred EcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccc
Q 041953 59 NISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLS 138 (279)
Q Consensus 59 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 138 (279)
+-.+.++. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 33444454 4555553 57999999999999766668999999999999999999777778999999999999999998
Q ss_pred cccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccccc-CCcccCCCCCccEEEccCcccccccCcc
Q 041953 139 GEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGV-VPKEICNLTKLKGLYLGGNRLQGEIPRE 217 (279)
Q Consensus 139 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 217 (279)
.++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .|..+..+++|+.|++++|.+++..+..
T Consensus 90 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 90 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp -EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred -ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 66666668999999999999999866666799999999999999999864 5888999999999999999998777777
Q ss_pred CCCCCCCC----EEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953 218 SGNLAELE----LMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274 (279)
Q Consensus 218 ~~~~~~L~----~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 274 (279)
+..+++|+ .|++++|++++..+..+. ..+|+.|++++|.+++.++..+..++++..
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred hhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccE
Confidence 77666776 899999999866555544 458999999999999998877777766553
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=3e-24 Score=190.86 Aligned_cols=86 Identities=23% Similarity=0.209 Sum_probs=65.0
Q ss_pred CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccc-cCCccCCCCCCCc
Q 041953 50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG-AFPSFAFNTSSLQ 128 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~ 128 (279)
..++++++|++++|.+++..|..|+++++|++|++++|.+. .+|.. .+++|++|++++|.+.+ ..|..+..+++|+
T Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence 34567888888888887777778888888888888888877 45554 67788888888888775 3567777788888
Q ss_pred EEEeeccccc
Q 041953 129 YLDFGFNTLS 138 (279)
Q Consensus 129 ~L~l~~n~~~ 138 (279)
+|++++|.+.
T Consensus 119 ~L~L~~n~l~ 128 (520)
T 2z7x_B 119 FLGLSTTHLE 128 (520)
T ss_dssp EEEEEESSCC
T ss_pred EEEecCcccc
Confidence 8888777664
No 51
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=6.5e-25 Score=182.63 Aligned_cols=202 Identities=23% Similarity=0.221 Sum_probs=157.0
Q ss_pred eEEEEEcCCCCccccCcccc--cCCCCCCEEEccCCcccCCCC----ccccCCCCCcEEEcccCcccccCCccCCCCCCC
Q 041953 54 RVTVLNISRLNLTGTIPSQL--GNLSSLQSLNLSCNRLSGSIP----SAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSL 127 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 127 (279)
++++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 58889999998888888777 788899999999998875444 334568889999999999887777788888999
Q ss_pred cEEEeeccccccc--cC-hhhhcCCCCCcEEEeecccccccCCc----cCCCCccCcEEeccCCcccccCCcccCCC---
Q 041953 128 QYLDFGFNTLSGE--IP-ANICSNLPFLEYLALSQNMFHGGIPS----ALSNCAYLQRLGLSSNDFSGVVPKEICNL--- 197 (279)
Q Consensus 128 ~~L~l~~n~~~~~--~~-~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~l~~~--- 197 (279)
++|++++|++.+. ++ ...+..+++|++|++++|.++ .++. .+..+++|++|++++|.+.+..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 9999999987532 22 222357888999999999886 3232 24567889999999999887767666665
Q ss_pred CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953 198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
++|+.|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++..
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence 68999999999988 5666664 7899999999998854 33 67788999999999988753
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=192.51 Aligned_cols=107 Identities=28% Similarity=0.377 Sum_probs=93.5
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
+++++|++++|.+++..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|++. .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 58999999999999888889999999999999999999777889999999999999999998 55655 8999999999
Q ss_pred ecccccc-ccChhhhcCCCCCcEEEeeccccc
Q 041953 133 GFNTLSG-EIPANICSNLPFLEYLALSQNMFH 163 (279)
Q Consensus 133 ~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~ 163 (279)
++|.+.+ .+|..+ .++++|++|++++|.+.
T Consensus 98 ~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 98 SFNAFDALPICKEF-GNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CSSCCSSCCCCGGG-GGCTTCCEEEEEESSCC
T ss_pred cCCccccccchhhh-ccCCcceEEEecCcccc
Confidence 9999974 345544 78888888888888764
No 53
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=3.2e-24 Score=171.83 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=170.2
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCc-ccCCCCccccCCCCCcEEEccc-CcccccCCccCCCCCCCcEE
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNR-LSGSIPSAIFTTYTLKYVSFRK-NQLSGAFPSFAFNTSSLQYL 130 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L 130 (279)
..+++|++++|.++++.+..|..+++|++|++++|. +....+..|..+++|++|++++ |.+....+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999998878899999999999999997 8766666899999999999998 99986666788899999999
Q ss_pred EeeccccccccChhhhcCCCCCc---EEEeecc-cccccCCccCCCCccCc-EEeccCCcccccCCcccCCCCCccEEEc
Q 041953 131 DFGFNTLSGEIPANICSNLPFLE---YLALSQN-MFHGGIPSALSNCAYLQ-RLGLSSNDFSGVVPKEICNLTKLKGLYL 205 (279)
Q Consensus 131 ~l~~n~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~~~~L~~L~l 205 (279)
++++|.+. .+|. +..+++|+ +|++++| .+....+..+..+++|+ .|++++|.+....+..+.. ++|+.|++
T Consensus 111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 99999998 6776 57888888 9999999 88866667799999999 9999999998444445555 89999999
Q ss_pred cCcc-cccccCccCCCC-CCCCEEeccCCcCcccCCccccCCCCCCeEEccCC
Q 041953 206 GGNR-LQGEIPRESGNL-AELELMSLSENELQGAIPREWGNLTGLGILQLSDN 256 (279)
Q Consensus 206 ~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 256 (279)
++|. ++...+..+..+ ++|+.|++++|++++. |.. .+++|+.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 9995 886767888999 9999999999999844 433 6789999999876
No 54
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=7.8e-24 Score=172.89 Aligned_cols=201 Identities=22% Similarity=0.264 Sum_probs=173.1
Q ss_pred EEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953 56 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN 135 (279)
Q Consensus 56 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 135 (279)
..+.+..+.+... ..+..+++|+.|+++++.+. .. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 3444555555433 33556889999999999987 33 3588899999999999999853 57889999999999999
Q ss_pred ccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccC
Q 041953 136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIP 215 (279)
Q Consensus 136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 215 (279)
.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus 96 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 96 QLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 998 7777777899999999999999997777778999999999999999997777778899999999999999997777
Q ss_pred ccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953 216 RESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP 263 (279)
Q Consensus 216 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (279)
..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 778999999999999999998888889999999999999999988755
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=3.4e-24 Score=192.20 Aligned_cols=107 Identities=27% Similarity=0.391 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+. .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57889999999998777788999999999999999998777888888999999999999888 55555 7888888888
Q ss_pred eccccccccC-hhhhcCCCCCcEEEeeccccc
Q 041953 133 GFNTLSGEIP-ANICSNLPFLEYLALSQNMFH 163 (279)
Q Consensus 133 ~~n~~~~~~~-~~~~~~~~~L~~L~l~~n~l~ 163 (279)
++|++. .++ +..+.++++|++|++++|.+.
T Consensus 129 s~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 129 SFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CSSCCS-BCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCcc-ccCchHhhcccCcccEEecCCCccc
Confidence 888887 443 234477888888888887765
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=7.4e-26 Score=188.52 Aligned_cols=213 Identities=24% Similarity=0.282 Sum_probs=165.4
Q ss_pred EEEEEcCCCCcc-ccCccccc-------CCCCCCEEEccCCcccCCCCccc--cCCCCCcEEEcccCcccccCCccCCCC
Q 041953 55 VTVLNISRLNLT-GTIPSQLG-------NLSSLQSLNLSCNRLSGSIPSAI--FTTYTLKYVSFRKNQLSGAFPSFAFNT 124 (279)
Q Consensus 55 l~~L~l~~~~l~-~~~~~~~~-------~l~~L~~L~l~~~~i~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l 124 (279)
++.|++++|.+. ..++..+. ++++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 455566666663 23444443 68899999999999988888876 7899999999999999865 7666655
Q ss_pred -----CCCcEEEeeccccccccChhhhcCCCCCcEEEeeccccccc--CCccC--CCCccCcEEeccCCccccc---CCc
Q 041953 125 -----SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG--IPSAL--SNCAYLQRLGLSSNDFSGV---VPK 192 (279)
Q Consensus 125 -----~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~~~~~---~~~ 192 (279)
++|++|++++|++. .++...+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+.+. ...
T Consensus 144 ~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 89999999999997 66655568899999999999987643 23333 7788999999999998732 223
Q ss_pred ccCCCCCccEEEccCcccccccC-ccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccc
Q 041953 193 EICNLTKLKGLYLGGNRLQGEIP-RESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLF 271 (279)
Q Consensus 193 ~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 271 (279)
.+..+++|+.|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..++.
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 34567899999999999987664 45667899999999999998 6676666 8999999999999998 44 766665
Q ss_pred ccc
Q 041953 272 SIK 274 (279)
Q Consensus 272 ~~~ 274 (279)
+..
T Consensus 298 L~~ 300 (312)
T 1wwl_A 298 VGN 300 (312)
T ss_dssp EEE
T ss_pred CCE
Confidence 543
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2e-24 Score=193.83 Aligned_cols=189 Identities=25% Similarity=0.285 Sum_probs=134.2
Q ss_pred cCCCCCCEEEccCCcccCCC--CccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCC
Q 041953 74 GNLSSLQSLNLSCNRLSGSI--PSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPF 151 (279)
Q Consensus 74 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 151 (279)
..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..+...+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 45666777777777665332 45566777777777777776633 3336677777777777777764444344567777
Q ss_pred CcEEEeecccccccCCccCCCCccCcEEeccCCccc-ccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEecc
Q 041953 152 LEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS-GVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLS 230 (279)
Q Consensus 152 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 230 (279)
|++|++++|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 777777777777666777777777788888777776 3566777777778888888777776667777777778888888
Q ss_pred CCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953 231 ENELQGAIPREWGNLTGLGILQLSDNFLTGITP 263 (279)
Q Consensus 231 ~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (279)
+|++++..+..+.++++|+.|++++|++.+..|
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 887776666677777788888888887777655
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=6.3e-25 Score=196.38 Aligned_cols=210 Identities=18% Similarity=0.154 Sum_probs=165.4
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
+++++|++++|.+++..|..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47999999999999888888999999999999999998777788999999999999999998666666889999999999
Q ss_pred ecccccc-ccChhhhcCCCCCcEEEeecccccccC-CccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccc
Q 041953 133 GFNTLSG-EIPANICSNLPFLEYLALSQNMFHGGI-PSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRL 210 (279)
Q Consensus 133 ~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 210 (279)
++|.+.+ ..+. .+.++++|++|++++|...+.+ +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 106 s~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 106 MGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 9998873 2233 4478999999999999843344 46788899999999999999888888888888899999988887
Q ss_pred ccccCccCCCCCCCCEEeccCCcCcccC--C-ccccCCCCCCeEEccCCcccccCc
Q 041953 211 QGEIPRESGNLAELELMSLSENELQGAI--P-REWGNLTGLGILQLSDNFLTGITP 263 (279)
Q Consensus 211 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~-~~~~~~~~L~~L~l~~n~l~~~~~ 263 (279)
.......+..+++|+.|++++|++++.. + .....+++|+.|++++|.+.+..+
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 6332222345788888888888887532 1 223445667777777776665444
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=9.6e-25 Score=182.16 Aligned_cols=212 Identities=21% Similarity=0.172 Sum_probs=121.6
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCc-------------
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPS------------- 119 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~------------- 119 (279)
+++++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+.
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l 111 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence 456677777777766556666677777777777776653332 66666677777776665522100
Q ss_pred ---cCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccC-CCCccCcEEeccCCcccccCCcccC
Q 041953 120 ---FAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL-SNCAYLQRLGLSSNDFSGVVPKEIC 195 (279)
Q Consensus 120 ---~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l~ 195 (279)
....+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. + ...
T Consensus 112 ~~~~~~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~ 188 (317)
T 3o53_A 112 SRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQV 188 (317)
T ss_dssp SEEEECCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCC
T ss_pred CCcCccccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-ccc
Confidence 0112345556666666555 3433333556666666666666654444443 2455666666666666533 2 122
Q ss_pred CCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc-ccCccccccccc
Q 041953 196 NLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT-GITPSSIYKLLF 271 (279)
Q Consensus 196 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~ 271 (279)
.+++|+.|++++|.+++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. +..|..+..++.
T Consensus 189 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 35566666666666653 3334556666666666666666 34555666666666666666666 555555554433
No 60
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=3.1e-23 Score=167.34 Aligned_cols=180 Identities=23% Similarity=0.273 Sum_probs=161.7
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEe
Q 041953 78 SLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLAL 157 (279)
Q Consensus 78 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 157 (279)
..++++++++.+. .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEEC
Confidence 4678999999988 6676554 68999999999999887788999999999999999998 677666789999999999
Q ss_pred ecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc
Q 041953 158 SQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA 237 (279)
Q Consensus 158 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 237 (279)
++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999977777889999999999999999977777788999999999999999977777899999999999999999988
Q ss_pred CCccccCCCCCCeEEccCCccccc
Q 041953 238 IPREWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 238 ~~~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
.+..+..+++|+.|++++|++...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 778899999999999999999876
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=8.8e-24 Score=189.55 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=74.1
Q ss_pred CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccc-cCCccCCCCCCCc
Q 041953 50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG-AFPSFAFNTSSLQ 128 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~ 128 (279)
...+++++|++++|.+++..|..|.++++|++|++++|.+. .+|.. .+++|++|++++|.+.+ ..|..+..+++|+
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCccc
Confidence 45678999999999999888999999999999999999998 56665 78999999999999885 3457888899999
Q ss_pred EEEeeccccc
Q 041953 129 YLDFGFNTLS 138 (279)
Q Consensus 129 ~L~l~~n~~~ 138 (279)
+|++++|.+.
T Consensus 150 ~L~L~~n~l~ 159 (562)
T 3a79_B 150 FLGLSAAKFR 159 (562)
T ss_dssp EEEEECSBCC
T ss_pred EEecCCCccc
Confidence 9999988775
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.5e-23 Score=171.32 Aligned_cols=189 Identities=23% Similarity=0.277 Sum_probs=166.3
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCC
Q 041953 73 LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL 152 (279)
Q Consensus 73 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 152 (279)
+.+++++++++++++.+. .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+. .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 667899999999999998 6665543 68999999999999777788999999999999999997 55543 679999
Q ss_pred cEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCC
Q 041953 153 EYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232 (279)
Q Consensus 153 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 232 (279)
++|++++|.+. .+|..+..+++|+.|++++|.++...+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 77888899999999999999999777788999999999999999999777777889999999999999
Q ss_pred cCcccCCccccCCCCCCeEEccCCcccccCccccccc
Q 041953 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269 (279)
Q Consensus 233 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 269 (279)
+++...+..+.++++|+.|++++|.++.+++ .+...
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~~ 194 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPK-GFFGS 194 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTT
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccCh-hhccc
Confidence 9997777778999999999999999997644 44443
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=5.7e-24 Score=190.91 Aligned_cols=217 Identities=22% Similarity=0.298 Sum_probs=169.1
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCcc--------------------ccCCCCCcEEEcccCc
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSA--------------------IFTTYTLKYVSFRKNQ 112 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~--------------------~~~~~~L~~L~l~~n~ 112 (279)
++++.|+++++.+. .+|..+..+ +|++|++++|.+. .+|.. ...+++|++|++++|.
T Consensus 282 ~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 282 TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 45666666666665 345555554 5555555555554 22221 1456777788887777
Q ss_pred ccccC--CccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCC-ccCCCCccCcEEeccCCccccc
Q 041953 113 LSGAF--PSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP-SALSNCAYLQRLGLSSNDFSGV 189 (279)
Q Consensus 113 ~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 189 (279)
+.+.. +..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 436 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC
T ss_pred cCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc
Confidence 76432 455667888888888888887 55555 5788999999999998876555 4688899999999999999888
Q ss_pred CCcccCCCCCccEEEccCcccc-cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccc
Q 041953 190 VPKEICNLTKLKGLYLGGNRLQ-GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK 268 (279)
Q Consensus 190 ~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 268 (279)
.+..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++.++..+..
T Consensus 437 ~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence 8888999999999999999987 468889999999999999999999888999999999999999999999998888888
Q ss_pred cccccc
Q 041953 269 LLFSIK 274 (279)
Q Consensus 269 ~~~~~~ 274 (279)
++++..
T Consensus 517 l~~L~~ 522 (570)
T 2z63_A 517 LTSLQK 522 (570)
T ss_dssp CTTCCE
T ss_pred ccCCcE
Confidence 776654
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.3e-24 Score=201.96 Aligned_cols=183 Identities=20% Similarity=0.286 Sum_probs=143.1
Q ss_pred CCCCeEEEEEcCCCCccc-----------------cCccccc--CCCCCCEEEccCCcccCCCCccccCCCCCcEEEccc
Q 041953 50 VHSHRVTVLNISRLNLTG-----------------TIPSQLG--NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRK 110 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 110 (279)
.++++|++|+|++|.+++ .+|..++ ++++|+.|++++|.+.+.+|..+..+++|++|++++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 456789999999999987 3788877 999999999999998888999999999999999999
Q ss_pred Cc-ccc-cCCccC-------CCCCCCcEEEeeccccccccCh-hhhcCCCCCcEEEeecccccccCCccCCCCccCcEEe
Q 041953 111 NQ-LSG-AFPSFA-------FNTSSLQYLDFGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLG 180 (279)
Q Consensus 111 n~-~~~-~~~~~~-------~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 180 (279)
|+ +.+ .+|..+ ..+++|++|++++|.+. .+|. ..+.++++|++|++++|.+. .+| .+..+++|+.|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 98 776 566543 34558999999999887 7877 23478888888888888887 677 788888888888
Q ss_pred ccCCcccccCCcccCCCCC-ccEEEccCcccccccCccCCCCCC--CCEEeccCCcCccc
Q 041953 181 LSSNDFSGVVPKEICNLTK-LKGLYLGGNRLQGEIPRESGNLAE--LELMSLSENELQGA 237 (279)
Q Consensus 181 l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~i~~~ 237 (279)
+++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+. |+.|++++|++.+.
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc
Confidence 8888887 67777777777 888888888876 56655554432 55566665555443
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=5.2e-23 Score=186.59 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=50.3
Q ss_pred ccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccc
Q 041953 193 EICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKL 269 (279)
Q Consensus 193 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 269 (279)
.+..+++|+.|++++|.+++..|..|.++++|+.|+|++|++++..+..|.++++|+.|++++|.+++..|..+..+
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 34445556666666666665566666666677777777776666666666666777777777777777766666555
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=1.5e-23 Score=174.22 Aligned_cols=195 Identities=22% Similarity=0.277 Sum_probs=166.6
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
.+++++|+++++.++. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+. +.+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 4579999999999984 44 588899999999999999854 44 89999999999999998853 4688999999999
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+++|.+. .++. +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 114 l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCC-Cchh--hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 9999997 5654 58899999999999999843 32 8889999999999999985433 888999999999999998
Q ss_pred cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCc
Q 041953 212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITP 263 (279)
Q Consensus 212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (279)
+..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++.+.
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 5433 788999999999999998554 38899999999999999988543
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=2.1e-24 Score=192.99 Aligned_cols=130 Identities=22% Similarity=0.172 Sum_probs=110.6
Q ss_pred CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccc-cCCccCCCCCCCc
Q 041953 50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSG-AFPSFAFNTSSLQ 128 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~ 128 (279)
..++++++|++++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+ ..+..+..+++|+
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 456789999999999998888999999999999999999997777779999999999999999985 3567889999999
Q ss_pred EEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEE
Q 041953 129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRL 179 (279)
Q Consensus 129 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 179 (279)
+|++++|.+.+.++...+.++++|++|++++|.+.+..|..+..+++|+.|
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 999999985557877667899999999999999987777766554433333
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2.1e-24 Score=180.14 Aligned_cols=209 Identities=22% Similarity=0.191 Sum_probs=162.9
Q ss_pred CCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCC----------------ccccCCCCCcEEEcccCccc
Q 041953 51 HSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIP----------------SAIFTTYTLKYVSFRKNQLS 114 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----------------~~~~~~~~L~~L~l~~n~~~ 114 (279)
..+++++|++++|.+++..+ +..+++|++|++++|.+.+..+ .....+++|++|++++|.+.
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC
T ss_pred CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC
Confidence 44567777777777765443 6667777777777776652110 01123567888888888888
Q ss_pred ccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCccc
Q 041953 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI 194 (279)
Q Consensus 115 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 194 (279)
+..+..+..+++|++|++++|.+.+..+..++..+++|++|++++|.+++. + ....+++|++|++++|.+.+ .+..+
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~ 210 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEF 210 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhh
Confidence 766677888999999999999998545555556789999999999999844 3 34458899999999999985 45558
Q ss_pred CCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCc-ccCCccccCCCCCCeEEccCC-cccccCccc
Q 041953 195 CNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ-GAIPREWGNLTGLGILQLSDN-FLTGITPSS 265 (279)
Q Consensus 195 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~ 265 (279)
..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..+..+..+++|+.++++++ .+.+..|..
T Consensus 211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 88999999999999998 57888999999999999999998 677888999999999999955 566665543
No 69
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=5.3e-23 Score=173.64 Aligned_cols=209 Identities=26% Similarity=0.365 Sum_probs=131.4
Q ss_pred CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953 50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 129 (279)
..++++++|++++|.+.+. +. +..+++|++|++++|..... +..+..+++|++|++++|.+....+ +..+++|++
T Consensus 107 ~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred cCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 4456777777777777643 22 66666677777766644322 2235555556666665555542211 444455555
Q ss_pred EEeecccccc---------------------ccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccc
Q 041953 130 LDFGFNTLSG---------------------EIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSG 188 (279)
Q Consensus 130 L~l~~n~~~~---------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 188 (279)
|++++|.+.. .++. +..+++|++|++++|.+.+ .+. +..+++|++|++++|.+.+
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC
Confidence 5555544431 2222 3556677777777777663 232 6667777777777777764
Q ss_pred cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccc
Q 041953 189 VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK 268 (279)
Q Consensus 189 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 268 (279)
. +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++++..| +..
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 2 4566777788888888877643 356677888888888888877777777888888888888888887766 444
Q ss_pred ccccc
Q 041953 269 LLFSI 273 (279)
Q Consensus 269 ~~~~~ 273 (279)
++.+.
T Consensus 332 l~~L~ 336 (347)
T 4fmz_A 332 LSKMD 336 (347)
T ss_dssp CTTCS
T ss_pred hhccc
Confidence 44443
No 70
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=9.1e-23 Score=172.18 Aligned_cols=212 Identities=24% Similarity=0.293 Sum_probs=160.5
Q ss_pred CCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCc
Q 041953 49 DVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQ 128 (279)
Q Consensus 49 ~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 128 (279)
...++++++|++++|.++. + +.+..+++|++|++++|.+.+ .+. +..+++|++|++++|..... +..+..+++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~ 158 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLN 158 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCC
T ss_pred hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccc-ccchhhCCCCc
Confidence 3456799999999999985 3 468999999999999999984 343 88999999999999976533 44588999999
Q ss_pred EEEeeccccccccChhhhcCCCCCcEEEeecccccccCC--------------------ccCCCCccCcEEeccCCcccc
Q 041953 129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIP--------------------SALSNCAYLQRLGLSSNDFSG 188 (279)
Q Consensus 129 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------------~~l~~l~~L~~L~l~~n~~~~ 188 (279)
+|++++|.+. .++. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus 159 ~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 159 YLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp EEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred EEEecCCCcC-Cchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCC
Confidence 9999999987 5444 4678888888888887763221 013445566677777776664
Q ss_pred cCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccc
Q 041953 189 VVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK 268 (279)
Q Consensus 189 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 268 (279)
..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++.+..+..++.
T Consensus 236 ~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 236 LSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred Ccc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 332 66677778888887777642 4567778888888888888744 35778888888999988888888888877
Q ss_pred cccccc
Q 041953 269 LLFSIK 274 (279)
Q Consensus 269 ~~~~~~ 274 (279)
++.+..
T Consensus 310 l~~L~~ 315 (347)
T 4fmz_A 310 LTNLTT 315 (347)
T ss_dssp CTTCSE
T ss_pred cccCCE
Confidence 766554
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=6.6e-24 Score=186.90 Aligned_cols=208 Identities=22% Similarity=0.158 Sum_probs=173.2
Q ss_pred CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953 50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 129 (279)
..+++|++|++++|.+++..| |..+++|++|++++|.+.+. + ..++|++|++++|.+.+..+. .+++|+.
T Consensus 55 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~ 124 (487)
T 3oja_A 55 APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKN 124 (487)
T ss_dssp TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCCCEEEC---CCSSCEE
T ss_pred hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECcCCcCCCCCcc---ccCCCCE
Confidence 456789999999999987655 89999999999999999732 2 348999999999999865443 4588999
Q ss_pred EEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCC-CCccCcEEeccCCcccccCCcccCCCCCccEEEccCc
Q 041953 130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALS-NCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGN 208 (279)
Q Consensus 130 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 208 (279)
|++++|.+. .++...+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+.+..+ ...+++|+.|++++|
T Consensus 125 L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 125 IYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSN 201 (487)
T ss_dssp EECCSSCCC-SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSS
T ss_pred EECCCCCCC-CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCC
Confidence 999999998 44444457899999999999999987777775 78999999999999986532 345889999999999
Q ss_pred ccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc-ccCcccccccccc
Q 041953 209 RLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT-GITPSSIYKLLFS 272 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~ 272 (279)
.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.+
T Consensus 202 ~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 202 KLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp CCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred CCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 9985 45558889999999999999984 6777999999999999999998 6666666665443
No 72
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.89 E-value=5.1e-23 Score=183.32 Aligned_cols=209 Identities=24% Similarity=0.359 Sum_probs=172.8
Q ss_pred CCCCCCCCCc-----ceeee-eeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcE
Q 041953 32 KNWNTSTPVC-----NWTGV-TCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKY 105 (279)
Q Consensus 32 ~~w~~~~~~c-----~~~~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 105 (279)
..|......| .|.++ .|.. .+++.|++++|.+++ +|..+ +++|+.|++++|.+. .+| ..+++|++
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~ 104 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEY 104 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred HHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCE
Confidence 3455555666 68888 6753 379999999999986 66655 378999999999998 666 45789999
Q ss_pred EEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCc
Q 041953 106 VSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSND 185 (279)
Q Consensus 106 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 185 (279)
|++++|.+.+ +|. +.. +|++|++++|.+. .+|. .+++|++|++++|.+++ +|. .+++|+.|++++|.
T Consensus 105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp EECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred EEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC
Confidence 9999999995 666 544 9999999999998 5776 58999999999999984 665 56889999999999
Q ss_pred ccccCCcccCCCCCccEEEccCcccccccCccCCCCCCC-------CEEeccCCcCcccCCccccCCCCCCeEEccCCcc
Q 041953 186 FSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAEL-------ELMSLSENELQGAIPREWGNLTGLGILQLSDNFL 258 (279)
Q Consensus 186 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L-------~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l 258 (279)
+.+ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|++
T Consensus 172 L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 172 LTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSC
T ss_pred CCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcC
Confidence 986 666 65 89999999999998 6666 554 77 99999999998 6788788899999999999999
Q ss_pred cccCccccccccc
Q 041953 259 TGITPSSIYKLLF 271 (279)
Q Consensus 259 ~~~~~~~~~~~~~ 271 (279)
++..|..++.+..
T Consensus 243 ~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 243 SSRIRESLSQQTA 255 (571)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCcCHHHHHHhhc
Confidence 9999998888754
No 73
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=3.8e-22 Score=175.02 Aligned_cols=193 Identities=28% Similarity=0.367 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCcc-----------
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSF----------- 120 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----------- 120 (279)
++++++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..
T Consensus 176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 249 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEE
Confidence 34555555555555432 224455555555555555543222 33444444444444444321 22
Q ss_pred -----------CCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccccc
Q 041953 121 -----------AFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGV 189 (279)
Q Consensus 121 -----------~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 189 (279)
+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 250 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 250 LANNQISNLAPLSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred CCCCccccchhhhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence 344444555555554444 2222 2445555555555555442211 44455555555555555543
Q ss_pred CCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953 190 VPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 190 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
.+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 325 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 325 SP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 32 34455555555555555432 345555666666666666654444 55566666666666666553
No 74
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.3e-22 Score=156.71 Aligned_cols=187 Identities=21% Similarity=0.256 Sum_probs=135.2
Q ss_pred CCCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccC
Q 041953 38 TPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAF 117 (279)
Q Consensus 38 ~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 117 (279)
...|.|.++.|.. ++++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|++....
T Consensus 4 ~C~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 4 RCSCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TCEEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 3557787777753 3343 234333 357888888888888655566778888888888888888555
Q ss_pred CccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCC
Q 041953 118 PSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNL 197 (279)
Q Consensus 118 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~ 197 (279)
+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 556677888888888888887 6666666778888888888888875555567777888888888888776555567777
Q ss_pred CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCC
Q 041953 198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTG 247 (279)
Q Consensus 198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ 247 (279)
++|+.|++++|.+.. .++.|+.|+++.|++++.+|..++.++.
T Consensus 148 ~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 148 TSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 788888888876542 3456777778888887777777766554
No 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=3.5e-22 Score=175.20 Aligned_cols=204 Identities=25% Similarity=0.329 Sum_probs=154.2
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
.++++.|++++|.+++. +.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.. . +..+++|++|+
T Consensus 220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-P-LAGLTALTNLE 293 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-G-GTTCTTCSEEE
T ss_pred cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc-c-ccCCCccCeEE
Confidence 45677777777776642 356778888888888888874433 788899999999999888543 3 78899999999
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++
T Consensus 294 L~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 294 LNENQLE-DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCSSCCS-CCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred cCCCccc-Cchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 9999997 5544 4789999999999999986544 77889999999999999864 46888999999999999998
Q ss_pred cccCccCCCCCCCCEEeccCCcCcccCCcccc-------CCCCCCeEEccCCcccc----cCccccccccc
Q 041953 212 GEIPRESGNLAELELMSLSENELQGAIPREWG-------NLTGLGILQLSDNFLTG----ITPSSIYKLLF 271 (279)
Q Consensus 212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-------~~~~L~~L~l~~n~l~~----~~~~~~~~~~~ 271 (279)
+..| +..+++|+.|++++|++++. |..+. .+.++....+....++. ..|..++.++.
T Consensus 367 ~~~~--~~~l~~L~~L~l~~n~~~~~-p~~~~~~~~ip~~~~~~~~~~~~~~~is~~g~~~~~~~~w~~~~ 434 (466)
T 1o6v_A 367 DLTP--LANLTRITQLGLNDQAWTNA-PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434 (466)
T ss_dssp BCGG--GTTCTTCCEEECCCEEEECC-CBCCCSEEEEECCCBCTTSCBCCCSEESTTCEEETTEEEEECCC
T ss_pred ccch--hhcCCCCCEEeccCCcccCC-chhhcccceecccccccCCCeecCceecCCcEEeCCceEECCCC
Confidence 7766 78899999999999999853 32221 12333444455555543 34555555543
No 76
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.3e-21 Score=169.35 Aligned_cols=195 Identities=24% Similarity=0.227 Sum_probs=124.0
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
++++++|++++|.+++. + +..+++|++|++++|.+.+. + +..+++|++|++++|.+.+ ++ +..+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 34555666666655542 2 55555666666666655532 2 5555666666666665553 22 55556666666
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+++|.+. .++ +..+++|++|++++|...+.+ .+..+++|+.|++++|.+.+ .| +..+++|+.|++++|.++
T Consensus 134 l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 134 CARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred CCCCccc-eec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence 6666655 232 245566666666666333233 35566777777777777775 33 667778888888888877
Q ss_pred cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccc
Q 041953 212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270 (279)
Q Consensus 212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 270 (279)
+. .+..+++|+.|++++|++++ +| +..+++|+.|++++|++++.++..+..+.
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence 43 36778888888888888885 45 77888888888888888887766555543
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.2e-21 Score=153.44 Aligned_cols=182 Identities=23% Similarity=0.257 Sum_probs=156.6
Q ss_pred CEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeec
Q 041953 80 QSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQ 159 (279)
Q Consensus 80 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 159 (279)
+.++.+++.+. .+|..+ .++|++|++++|.+....+..+..+++|++|++++|.+. .++...|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 56777777776 455433 468999999999999666667889999999999999998 78887778999999999999
Q ss_pred ccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCC
Q 041953 160 NMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIP 239 (279)
Q Consensus 160 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 239 (279)
|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 9998666667889999999999999999777777889999999999999998776667889999999999999775
Q ss_pred ccccCCCCCCeEEccCCcccccCcccccccccc
Q 041953 240 REWGNLTGLGILQLSDNFLTGITPSSIYKLLFS 272 (279)
Q Consensus 240 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 272 (279)
..+++|+.|++..|.+++.+|.+++.+...
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~~~ 191 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 191 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSBCTT
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCccccCC
Confidence 346789999999999999999998887644
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=4.5e-21 Score=167.48 Aligned_cols=196 Identities=20% Similarity=0.241 Sum_probs=167.5
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
++++++|++++|.+++. | .+..+++|++|++++|.+.+. + +..+++|++|++++|.+.+. + +..+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 46899999999999864 5 689999999999999999853 3 88999999999999999854 3 88999999999
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+++|++. .++ +..+++|++|++++|.+++. .+..+++|++|++++|...+.. .+..+++|+.|++++|.++
T Consensus 113 L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 113 CDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred CCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 9999998 565 47899999999999999853 3788999999999999654444 4778899999999999998
Q ss_pred cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953 212 GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 212 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
+ +| +..+++|+.|++++|++++. .+..+++|+.|++++|.+++++ ++.++.+.
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~ 236 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLT 236 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCS
T ss_pred e-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCC
Confidence 5 44 78899999999999999865 4889999999999999999963 55554443
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.5e-21 Score=162.11 Aligned_cols=184 Identities=20% Similarity=0.316 Sum_probs=155.7
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCC
Q 041953 73 LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL 152 (279)
Q Consensus 73 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 152 (279)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+... +. +..+++|++|++++|.+. .++ . +..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~-~~~-~-~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK-NVS-A-IAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS-CCG-G-GTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC-Cch-h-hcCCCCC
Confidence 456789999999999997 444 588899999999999999854 44 889999999999999997 554 3 4789999
Q ss_pred cEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCC
Q 041953 153 EYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232 (279)
Q Consensus 153 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 232 (279)
++|++++|.+.+ .+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 110 ~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 999999999984 44 48899999999999999985443 7889999999999999985433 889999999999999
Q ss_pred cCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 233 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
++++..+ +..+++|+.|++++|.+++..+ +..++++.
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 220 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLF 220 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCC
Confidence 9985543 8899999999999999998864 66665544
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.2e-23 Score=176.78 Aligned_cols=202 Identities=19% Similarity=0.141 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCC-CCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGS-IPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
+++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 455555555555543333 33455555555555555432 4444555555555555555554444444445555555555
Q ss_pred ecc-ccccccChhhhcCCCCCcEEEeecc-ccccc-CCccCCCCc-cCcEEeccCCc--cc-ccCCcccCCCCCccEEEc
Q 041953 133 GFN-TLSGEIPANICSNLPFLEYLALSQN-MFHGG-IPSALSNCA-YLQRLGLSSND--FS-GVVPKEICNLTKLKGLYL 205 (279)
Q Consensus 133 ~~n-~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~l~~n~--~~-~~~~~~l~~~~~L~~L~l 205 (279)
++| .+.+......+..+++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +..+..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 555 3332111222244555555555555 44422 233344444 55555555552 22 122333344455555555
Q ss_pred cCcc-cccccCccCCCCCCCCEEeccCCc-CcccCCccccCCCCCCeEEccCC
Q 041953 206 GGNR-LQGEIPRESGNLAELELMSLSENE-LQGAIPREWGNLTGLGILQLSDN 256 (279)
Q Consensus 206 ~~n~-~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n 256 (279)
++|. +++..+..+..+++|+.|++++|. +.......+.++++|+.|++++|
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 5555 333334444445555555555552 21111113444445555554444
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=166.29 Aligned_cols=203 Identities=19% Similarity=0.224 Sum_probs=162.1
Q ss_pred eEEEEEcCCCCccccCcc---cccCCCCCCEEEccCCcccCCCCccc--cCCCCCcEEEcccCcccccCC----ccCCCC
Q 041953 54 RVTVLNISRLNLTGTIPS---QLGNLSSLQSLNLSCNRLSGSIPSAI--FTTYTLKYVSFRKNQLSGAFP----SFAFNT 124 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~---~~~~l~~L~~L~l~~~~i~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~----~~~~~l 124 (279)
+++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 567788888776532111 12234679999999999998888887 889999999999999986544 334578
Q ss_pred CCCcEEEeeccccccccChhhhcCCCCCcEEEeeccccccc--C--CccCCCCccCcEEeccCCcccccCCc----ccCC
Q 041953 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGG--I--PSALSNCAYLQRLGLSSNDFSGVVPK----EICN 196 (279)
Q Consensus 125 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~ 196 (279)
++|++|++++|.+. .++...+..+++|++|++++|.+.+. . +..+..+++|++|++++|.++. .+. .+..
T Consensus 145 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 99999999999997 66666668999999999999987532 2 2334678899999999999873 232 2467
Q ss_pred CCCccEEEccCcccccccCccCCCC---CCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccccc
Q 041953 197 LTKLKGLYLGGNRLQGEIPRESGNL---AELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 197 ~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence 7899999999999997778777666 69999999999998 6676664 7999999999999986
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.4e-23 Score=179.72 Aligned_cols=211 Identities=18% Similarity=0.200 Sum_probs=115.3
Q ss_pred CCeEEEEEcCCCC---ccccCcccc-------cCCCCCCEEEccCCcccC----CCCccccCCCCCcEEEcccCcccccC
Q 041953 52 SHRVTVLNISRLN---LTGTIPSQL-------GNLSSLQSLNLSCNRLSG----SIPSAIFTTYTLKYVSFRKNQLSGAF 117 (279)
Q Consensus 52 ~~~l~~L~l~~~~---l~~~~~~~~-------~~l~~L~~L~l~~~~i~~----~~~~~~~~~~~L~~L~l~~n~~~~~~ 117 (279)
.++|++|++++|. +.+.+|..+ ..+++|++|++++|.+.+ .++..+..+++|++|++++|.+....
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 4456666666543 222333322 455666666666666654 24445555666666666666654221
Q ss_pred C----ccCCCC---------CCCcEEEeecccccc-ccCh--hhhcCCCCCcEEEeecccccc-----cCCccCCCCccC
Q 041953 118 P----SFAFNT---------SSLQYLDFGFNTLSG-EIPA--NICSNLPFLEYLALSQNMFHG-----GIPSALSNCAYL 176 (279)
Q Consensus 118 ~----~~~~~l---------~~L~~L~l~~n~~~~-~~~~--~~~~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L 176 (279)
+ ..+..+ ++|++|++++|++.. .++. ..+..+++|++|++++|.+.. ..+..+..+++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 1 112222 566666666666541 2221 223456666666666666542 122255566666
Q ss_pred cEEeccCCccc----ccCCcccCCCCCccEEEccCcccccc----cCccC--CCCCCCCEEeccCCcCcc----cCCccc
Q 041953 177 QRLGLSSNDFS----GVVPKEICNLTKLKGLYLGGNRLQGE----IPRES--GNLAELELMSLSENELQG----AIPREW 242 (279)
Q Consensus 177 ~~L~l~~n~~~----~~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~--~~~~~L~~L~l~~n~i~~----~~~~~~ 242 (279)
+.|++++|.+. ..++..+..+++|+.|++++|.+++. ++..+ ..+++|+.|+|++|.+++ .+|..+
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 66666666664 33455556666666677766666543 33343 235667777777776664 244444
Q ss_pred -cCCCCCCeEEccCCcccccC
Q 041953 243 -GNLTGLGILQLSDNFLTGIT 262 (279)
Q Consensus 243 -~~~~~L~~L~l~~n~l~~~~ 262 (279)
.++++|+.|++++|++++..
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTTS
T ss_pred HhcCCCceEEEccCCcCCcch
Confidence 44667777777777666655
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.7e-23 Score=172.64 Aligned_cols=222 Identities=20% Similarity=0.222 Sum_probs=168.0
Q ss_pred CCCeEEEEEcCCCCcccc-CcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccC-cccc-cCCccCCCCCCC
Q 041953 51 HSHRVTVLNISRLNLTGT-IPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKN-QLSG-AFPSFAFNTSSL 127 (279)
Q Consensus 51 ~~~~l~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n-~~~~-~~~~~~~~l~~L 127 (279)
..+++++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+.+ .++..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 356899999999988755 7777888999999999999888777778888999999999999 5664 245557788999
Q ss_pred cEEEeecc-ccccccChhhhcCCC-CCcEEEeeccc--cc-ccCCccCCCCccCcEEeccCCc-ccccCCcccCCCCCcc
Q 041953 128 QYLDFGFN-TLSGEIPANICSNLP-FLEYLALSQNM--FH-GGIPSALSNCAYLQRLGLSSND-FSGVVPKEICNLTKLK 201 (279)
Q Consensus 128 ~~L~l~~n-~~~~~~~~~~~~~~~-~L~~L~l~~n~--l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~ 201 (279)
++|++++| .+.+......+..++ +|++|++++|. ++ ..++..+..+++|+.|++++|. +++..+..+..+++|+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 99999999 776432233447788 99999999984 43 2445566778899999999998 6666777888889999
Q ss_pred EEEccCcc-cccccCccCCCCCCCCEEeccCCcCcccCCccccCC-CCCCeEEccCCcccccCcccccccccccccc
Q 041953 202 GLYLGGNR-LQGEIPRESGNLAELELMSLSENELQGAIPREWGNL-TGLGILQLSDNFLTGITPSSIYKLLFSIKFG 276 (279)
Q Consensus 202 ~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 276 (279)
.|++++|. +.......+..+++|+.|++++| +... .+..+ ..+..|++++|.+++..|+.++.-.....||
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~~~~~~i~g 323 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWG 323 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSSTTCCCBTT
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccccccceeec
Confidence 99999985 33222235777899999999998 4422 33333 2366677899999999998887754444555
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=6.1e-21 Score=157.15 Aligned_cols=168 Identities=24% Similarity=0.362 Sum_probs=103.8
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
++++.|++++|.+... + .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+.. + +.+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEEC
Confidence 4566777777766533 2 3666677777777777766432 2 6666777777777776653 2 23666667777777
Q ss_pred eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG 212 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 212 (279)
++|.+. .++ . +..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 120 ~~n~i~-~~~-~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 120 EHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TTSCCC-CCG-G-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCcCC-CCh-h-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 777665 332 2 35566677777776666532 456666666666666666664333 5566666666666666653
Q ss_pred ccCccCCCCCCCCEEeccCCcCc
Q 041953 213 EIPRESGNLAELELMSLSENELQ 235 (279)
Q Consensus 213 ~~~~~~~~~~~L~~L~l~~n~i~ 235 (279)
++ .+..+++|+.|++++|++.
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEE
T ss_pred -Ch-hhccCCCCCEEECcCCccc
Confidence 22 3566666666666666665
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.5e-20 Score=158.86 Aligned_cols=213 Identities=15% Similarity=0.094 Sum_probs=147.7
Q ss_pred CCcceeeeeeCCC---------CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCC-ccccCCCCCcE-EE
Q 041953 39 PVCNWTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIP-SAIFTTYTLKY-VS 107 (279)
Q Consensus 39 ~~c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~-L~ 107 (279)
..|.+..+.|... .+.+++|+|++|.++.+.+..|.++++|++|++++|.+.+.++ ..|.++++++. +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 4467777778531 2467888888888886666778888888888888888765444 46777887765 45
Q ss_pred cccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeec-ccccccCCccCCCCc-cCcEEeccCCc
Q 041953 108 FRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQ-NMFHGGIPSALSNCA-YLQRLGLSSND 185 (279)
Q Consensus 108 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~ 185 (279)
+..|++....+..+..+++|++|++++|.+. .++...+....++..+++.+ +.+....+..+..+. .++.|++++|.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 5667787666777888888888888888887 66665556667777888865 455544444555553 57788888888
Q ss_pred ccccCCcccCCCCCccEEEccC-cccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCC
Q 041953 186 FSGVVPKEICNLTKLKGLYLGG-NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN 256 (279)
Q Consensus 186 ~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 256 (279)
++...+..+ ...+|+.+++.+ |.++...+..|..+++|+.|++++|+++...+..+ .+|+.|.+.++
T Consensus 166 i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~ 233 (350)
T 4ay9_X 166 IQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARST 233 (350)
T ss_dssp CCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTC
T ss_pred ccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccC
Confidence 874444333 456788888875 55654444567888888888888888874444333 45555665554
No 86
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=2.2e-20 Score=169.33 Aligned_cols=207 Identities=22% Similarity=0.248 Sum_probs=168.9
Q ss_pred CCeEEEEEcCCCCccc--cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCCCc
Q 041953 52 SHRVTVLNISRLNLTG--TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSSLQ 128 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~ 128 (279)
.+.++.+++++|.+.. ..+..+..+.+|+.+++..+.+. ..+..+..+++|+.+++..++.....+ ..+..+.+++
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccc
Confidence 3456667777666542 33444556667777777777665 345567778888888888887664433 4577889999
Q ss_pred EEEeeccccccccChhhhcCCCCCcEEEeeccccc-ccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccC
Q 041953 129 YLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFH-GGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207 (279)
Q Consensus 129 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 207 (279)
.++++.|.+. ..+...+..++.+++|++++|.+. ...|..+..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 449 ~l~ls~n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 449 YLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp EEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cccccccccc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 9999999997 555566688999999999998754 35678899999999999999999988899999999999999999
Q ss_pred cccccccCccCCCCCCCCEEeccCCcCcccCCccccCC-CCCCeEEccCCcccc
Q 041953 208 NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNL-TGLGILQLSDNFLTG 260 (279)
Q Consensus 208 n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~ 260 (279)
|.+++..+..+..+++|+.|++++|++++..|..+..+ ++|+.|++++|++.-
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99998888889999999999999999999999999988 589999999999864
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=6e-23 Score=175.88 Aligned_cols=222 Identities=17% Similarity=0.190 Sum_probs=173.2
Q ss_pred CCeEEEEEcCCCCccccC----cccccCCCCCCEEEccCCccc---CCCCccc-------cCCCCCcEEEcccCcccc--
Q 041953 52 SHRVTVLNISRLNLTGTI----PSQLGNLSSLQSLNLSCNRLS---GSIPSAI-------FTTYTLKYVSFRKNQLSG-- 115 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~i~---~~~~~~~-------~~~~~L~~L~l~~n~~~~-- 115 (279)
.+++++|++++|.++... +..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 457999999999998653 345778999999999997543 3445444 688999999999999986
Q ss_pred --cCCccCCCCCCCcEEEeeccccccccChhh---hcCC---------CCCcEEEeecccccc-cCC---ccCCCCccCc
Q 041953 116 --AFPSFAFNTSSLQYLDFGFNTLSGEIPANI---CSNL---------PFLEYLALSQNMFHG-GIP---SALSNCAYLQ 177 (279)
Q Consensus 116 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~---------~~L~~L~l~~n~l~~-~~~---~~l~~l~~L~ 177 (279)
.++..+..+++|++|++++|.+....+..+ +..+ ++|++|++++|.+.. ..+ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 356677889999999999999863322222 1233 899999999999872 333 4566788999
Q ss_pred EEeccCCcccc-----cCCcccCCCCCccEEEccCcccc----cccCccCCCCCCCCEEeccCCcCccc----CCccc--
Q 041953 178 RLGLSSNDFSG-----VVPKEICNLTKLKGLYLGGNRLQ----GEIPRESGNLAELELMSLSENELQGA----IPREW-- 242 (279)
Q Consensus 178 ~L~l~~n~~~~-----~~~~~l~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~-- 242 (279)
+|++++|.+.. ..+..+..+++|+.|++++|.++ ..+|..+..+++|+.|+|++|.+.+. ++..+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999999873 23447788899999999999985 46777888999999999999999765 45566
Q ss_pred cCCCCCCeEEccCCcccc----cCcccc-ccccccc
Q 041953 243 GNLTGLGILQLSDNFLTG----ITPSSI-YKLLFSI 273 (279)
Q Consensus 243 ~~~~~L~~L~l~~n~l~~----~~~~~~-~~~~~~~ 273 (279)
..+++|+.|++++|.+++ .+|..+ .+++++.
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 348999999999999999 466665 4344443
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=3.3e-20 Score=156.74 Aligned_cols=214 Identities=19% Similarity=0.139 Sum_probs=168.8
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCCCcE-EEeec
Q 041953 57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSSLQY-LDFGF 134 (279)
Q Consensus 57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~ 134 (279)
.++-++++++ .+|..+ .+++++|++++|+|+...+..|.++++|++|++++|++.+.++ ..|..++++.+ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 5677888888 566655 3689999999999995555679999999999999999865555 46788888876 55667
Q ss_pred cccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccC-CcccccCCcccCCC-CCccEEEccCccccc
Q 041953 135 NTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS-NDFSGVVPKEICNL-TKLKGLYLGGNRLQG 212 (279)
Q Consensus 135 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~~-~~L~~L~l~~n~~~~ 212 (279)
|++. .++...|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.++.
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 8887 88878889999999999999999855555566666788888865 55665555566665 468999999999984
Q ss_pred ccCccCCCCCCCCEEeccC-CcCcccCCccccCCCCCCeEEccCCcccccCccccccccccccc
Q 041953 213 EIPRESGNLAELELMSLSE-NELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIKF 275 (279)
Q Consensus 213 ~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 275 (279)
++.......+|+.+++++ |.++...+..|.++++|+.|++++|+|+.+++..+..+.++...
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence 444444567899999975 67775555678999999999999999999988888888776544
No 89
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=4.1e-20 Score=146.94 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=118.8
Q ss_pred CCCCCCCCCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccC
Q 041953 32 KNWNTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKN 111 (279)
Q Consensus 32 ~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n 111 (279)
..|......|.|.++.|.. +.++ .+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 5566778999999888853 3333 3444333 67888888888888766777788888888888888
Q ss_pred cccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCC
Q 041953 112 QLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVP 191 (279)
Q Consensus 112 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 191 (279)
.+....+..+..+++|++|++++|.+. .++...|..+++|++|++++|.+. .+|..+..+++|+.|++++|.+....+
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 887554455677788888888888776 666666677778888888887777 666677777777777777777775555
Q ss_pred cccCCCCCccEEEccCccccc
Q 041953 192 KEICNLTKLKGLYLGGNRLQG 212 (279)
Q Consensus 192 ~~l~~~~~L~~L~l~~n~~~~ 212 (279)
..+..+++|+.|++++|.+..
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCT
T ss_pred HHHhCCCCCCEEEeeCCCccC
Confidence 566677777777777777653
No 90
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=4.5e-20 Score=145.79 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=106.8
Q ss_pred CEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCC-ccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953 80 QSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFP-SFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158 (279)
Q Consensus 80 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 158 (279)
+.++++++.+. .+|..+ .+.+++|++++|.+.+..+ ..+..+++|++|++++|.+. .++...|.++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence 47788888776 455543 3356778888887775533 34667777777777777776 5555555777777777777
Q ss_pred cccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcc
Q 041953 159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQG 236 (279)
Q Consensus 159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 236 (279)
+|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 777775555667777777777777777776666667777777777777777776666677777777777777776653
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=5.6e-20 Score=145.26 Aligned_cols=152 Identities=22% Similarity=0.208 Sum_probs=107.1
Q ss_pred CEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeec
Q 041953 80 QSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQ 159 (279)
Q Consensus 80 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 159 (279)
+.++.+++.+. .+|..+. ++|+.|++++|.+....+..+..+++|++|++++|.+. .+....|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCC
Confidence 56777777776 5555433 57888888888877655567777778888888887776 55444457777777777777
Q ss_pred ccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCc
Q 041953 160 NMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235 (279)
Q Consensus 160 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 235 (279)
|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7777444445667777777777777777666667777777777777777777665566777777777777777664
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=2.9e-20 Score=157.73 Aligned_cols=175 Identities=28% Similarity=0.245 Sum_probs=119.8
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCcccc-CCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953 57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIF-TTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN 135 (279)
Q Consensus 57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 135 (279)
.+++++++++ .+|..+. ..++.|++++|.+.+..+..|. .+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5777888877 4555443 4688899999988866666666 7888888888888888666667788888888888888
Q ss_pred ccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCccc---CCCCCccEEEccCccccc
Q 041953 136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEI---CNLTKLKGLYLGGNRLQG 212 (279)
Q Consensus 136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~~n~~~~ 212 (279)
++. .++...|.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.++.
T Consensus 99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 876 6666666777888888888877776666677777777777777777764333333 345666666666666653
Q ss_pred ccCccCCCCCC--CCEEeccCCcCc
Q 041953 213 EIPRESGNLAE--LELMSLSENELQ 235 (279)
Q Consensus 213 ~~~~~~~~~~~--L~~L~l~~n~i~ 235 (279)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 33334444444 255666666554
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=2.6e-20 Score=167.49 Aligned_cols=171 Identities=25% Similarity=0.374 Sum_probs=131.1
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.. + +.+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEE
Confidence 4567888888888874 33 57788888888888888875433 7888888888888888874 2 3677888888888
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+++|.+. .++. +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.
T Consensus 116 Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 8888886 4432 36788888888888888743 567788888888888888876554 777888888888888887
Q ss_pred cccCccCCCCCCCCEEeccCCcCccc
Q 041953 212 GEIPRESGNLAELELMSLSENELQGA 237 (279)
Q Consensus 212 ~~~~~~~~~~~~L~~L~l~~n~i~~~ 237 (279)
+. ..+..+++|+.|+|++|++.+.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 43 3577788888888888887654
No 94
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.3e-19 Score=163.29 Aligned_cols=89 Identities=26% Similarity=0.337 Sum_probs=64.6
Q ss_pred ccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEc
Q 041953 174 AYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQL 253 (279)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 253 (279)
++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+.++++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 456666666666653 33 23466777777777776 4444 5578888888888887 66778888899999999
Q ss_pred cCCcccccCccccccccc
Q 041953 254 SDNFLTGITPSSIYKLLF 271 (279)
Q Consensus 254 ~~n~l~~~~~~~~~~~~~ 271 (279)
++|++++..|..+..+..
T Consensus 292 ~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 292 EGNPLSERTLQALREITS 309 (622)
T ss_dssp CSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhccc
Confidence 999998888877766643
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=2.7e-22 Score=170.36 Aligned_cols=207 Identities=21% Similarity=0.186 Sum_probs=109.1
Q ss_pred eEEEEEcCCCCccccCc----ccccCCC-CCCEEEccCCcccCCCCccccCC-----CCCcEEEcccCcccccCCcc---
Q 041953 54 RVTVLNISRLNLTGTIP----SQLGNLS-SLQSLNLSCNRLSGSIPSAIFTT-----YTLKYVSFRKNQLSGAFPSF--- 120 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~--- 120 (279)
.+++|++++|.+++..+ ..|..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 46666777666665444 5555666 66667776666665545444443 66666666666665433332
Q ss_pred -CCCC-CCCcEEEeeccccccccChhh----hcC-CCCCcEEEeecccccccCC----ccCCCCc-cCcEEeccCCcccc
Q 041953 121 -AFNT-SSLQYLDFGFNTLSGEIPANI----CSN-LPFLEYLALSQNMFHGGIP----SALSNCA-YLQRLGLSSNDFSG 188 (279)
Q Consensus 121 -~~~l-~~L~~L~l~~n~~~~~~~~~~----~~~-~~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~ 188 (279)
+..+ ++|++|++++|.+. ..+... +.. .++|++|++++|.+.+... ..+..++ +|++|++++|.+.+
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHhCCCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 2233 56666666666665 332221 122 2466666666666653222 2223333 56666666666654
Q ss_pred cCCcc----cCCC-CCccEEEccCcccccc----cCccCCC-CCCCCEEeccCCcCcccCC----ccccCCCCCCeEEcc
Q 041953 189 VVPKE----ICNL-TKLKGLYLGGNRLQGE----IPRESGN-LAELELMSLSENELQGAIP----REWGNLTGLGILQLS 254 (279)
Q Consensus 189 ~~~~~----l~~~-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~ 254 (279)
..+.. +... ++|+.|++++|.+.+. ++..+.. .++|+.|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 44322 2223 3666666666665531 2223322 2456666666666654332 223445556666666
Q ss_pred CCccccc
Q 041953 255 DNFLTGI 261 (279)
Q Consensus 255 ~n~l~~~ 261 (279)
+|.+.++
T Consensus 262 ~n~l~~i 268 (362)
T 3goz_A 262 YDIVKNM 268 (362)
T ss_dssp HHHHTTC
T ss_pred cCCcccc
Confidence 6654443
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1.4e-19 Score=142.86 Aligned_cols=151 Identities=22% Similarity=0.266 Sum_probs=131.0
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc
Q 041953 57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT 136 (279)
Q Consensus 57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 136 (279)
.++.++++++ .+|..+. +.|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4566677776 4555443 689999999999986666788899999999999999998878899999999999999999
Q ss_pred cccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953 137 LSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 137 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+. .++...|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus 92 l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 98 888888889999999999999999777888999999999999999999777778888999999999999875
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=4.7e-20 Score=156.46 Aligned_cols=173 Identities=24% Similarity=0.263 Sum_probs=113.3
Q ss_pred CCCcceeeeeeCCC---------CCeEEEEEcCCCCccccCccccc-CCCCCCEEEccCCcccCCCCccccCCCCCcEEE
Q 041953 38 TPVCNWTGVTCDVH---------SHRVTVLNISRLNLTGTIPSQLG-NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVS 107 (279)
Q Consensus 38 ~~~c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 107 (279)
...|.+..+.|... ...++.|+|++|.+++..+..|. .+++|+.|++++|.+.+..+..|..+++|++|+
T Consensus 15 ~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 15 NCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 34455555555421 23466777777777766666666 677777777777777755556677777777777
Q ss_pred cccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccC---CCCccCcEEeccCC
Q 041953 108 FRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL---SNCAYLQRLGLSSN 184 (279)
Q Consensus 108 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n 184 (279)
+++|++....+..+..+++|++|++++|.+. .++...|.++++|++|++++|.++...+..+ ..+++|+.|++++|
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 7777777555556777777777777777776 5555555777777777777777764333333 45677777777777
Q ss_pred cccccCCcccCCCCC--ccEEEccCcccc
Q 041953 185 DFSGVVPKEICNLTK--LKGLYLGGNRLQ 211 (279)
Q Consensus 185 ~~~~~~~~~l~~~~~--L~~L~l~~n~~~ 211 (279)
.+....+..+..++. ++.|++.+|.+.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 777544445555554 366777777664
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=1.2e-21 Score=166.35 Aligned_cols=211 Identities=20% Similarity=0.171 Sum_probs=162.9
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCC----ccccCCC-CCcEEEcccCcccccCCccCCCC-----CC
Q 041953 57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIP----SAIFTTY-TLKYVSFRKNQLSGAFPSFAFNT-----SS 126 (279)
Q Consensus 57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l-----~~ 126 (279)
...++.+++++.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45788999998888877777779999999999986665 6788888 89999999999986655555543 89
Q ss_pred CcEEEeeccccccccChhh---hcCC-CCCcEEEeecccccccCCcc----CCC-CccCcEEeccCCcccccCC----cc
Q 041953 127 LQYLDFGFNTLSGEIPANI---CSNL-PFLEYLALSQNMFHGGIPSA----LSN-CAYLQRLGLSSNDFSGVVP----KE 193 (279)
Q Consensus 127 L~~L~l~~n~~~~~~~~~~---~~~~-~~L~~L~l~~n~l~~~~~~~----l~~-l~~L~~L~l~~n~~~~~~~----~~ 193 (279)
|++|++++|.+.+..+..+ +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999974333322 3445 89999999999998655544 334 3689999999999985433 33
Q ss_pred cCCCC-CccEEEccCcccccccCcc----CCCC-CCCCEEeccCCcCccc----CCccccC-CCCCCeEEccCCcccccC
Q 041953 194 ICNLT-KLKGLYLGGNRLQGEIPRE----SGNL-AELELMSLSENELQGA----IPREWGN-LTGLGILQLSDNFLTGIT 262 (279)
Q Consensus 194 l~~~~-~L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~i~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~ 262 (279)
+...+ +|+.|++++|.+++..+.. +... ++|+.|+|++|.+.+. ++..+.. .++|+.|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34554 8999999999998655533 3444 5999999999999863 3445555 459999999999999987
Q ss_pred ccccc
Q 041953 263 PSSIY 267 (279)
Q Consensus 263 ~~~~~ 267 (279)
+..+.
T Consensus 242 ~~~l~ 246 (362)
T 3goz_A 242 LENLK 246 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 74443
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=9.9e-19 Score=157.47 Aligned_cols=68 Identities=34% Similarity=0.436 Sum_probs=48.1
Q ss_pred CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953 198 TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274 (279)
Q Consensus 198 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 274 (279)
++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|.++.+ |..+..++++..
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~ 288 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETT 288 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSC-CGGGGGSCTTCE
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcC-CHHHhhccccCE
Confidence 456777777776663 44 34577888888888887 4444 567899999999998855 667877766544
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.2e-19 Score=149.52 Aligned_cols=194 Identities=20% Similarity=0.265 Sum_probs=157.8
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc
Q 041953 57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT 136 (279)
Q Consensus 57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 136 (279)
.+.+....+.+. ..+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+.. . +..+++|++|++++|.
T Consensus 28 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCcccc--cchhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCc
Confidence 334555555432 234567899999999999974 33 4788999999999999998543 3 8899999999999999
Q ss_pred cccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCc
Q 041953 137 LSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR 216 (279)
Q Consensus 137 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 216 (279)
+. .++. +..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+
T Consensus 102 l~-~~~~--l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 102 VK-DLSS--LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CC-CGGG--GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CC-CChh--hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence 97 5554 4789999999999999974 3 4688899999999999999854 568889999999999999986544
Q ss_pred cCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccc
Q 041953 217 ESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIY 267 (279)
Q Consensus 217 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 267 (279)
+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++...+...+.
T Consensus 174 -l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~~~~~ 221 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPINHQS 221 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCEECCS
T ss_pred -hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcccccc
Confidence 8889999999999999985 44 489999999999999999876554443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1.3e-19 Score=140.78 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=110.4
Q ss_pred cCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCc
Q 041953 98 FTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQ 177 (279)
Q Consensus 98 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 177 (279)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .++ . +..+++|++|++++|.+.+..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 44556666666666665 334 4566677777777777554 332 2 36678888888888877765667778888888
Q ss_pred EEeccCCcccccCCcccCCCCCccEEEccCcc-cccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCC
Q 041953 178 RLGLSSNDFSGVVPKEICNLTKLKGLYLGGNR-LQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDN 256 (279)
Q Consensus 178 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 256 (279)
.|++++|.+.+..+..+..+++|+.|++++|. ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 88888888876667777788888888888887 55 444 67788889999999998874 33 6788889999999998
Q ss_pred cccc
Q 041953 257 FLTG 260 (279)
Q Consensus 257 ~l~~ 260 (279)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 8764
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=2e-19 Score=161.73 Aligned_cols=197 Identities=21% Similarity=0.288 Sum_probs=146.4
Q ss_pred EEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeec
Q 041953 55 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGF 134 (279)
Q Consensus 55 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 134 (279)
+..+.+..+.+....+ +..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3344455555553322 456778888888888886 333 57788888888888888875433 77888888888888
Q ss_pred cccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccccc
Q 041953 135 NTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEI 214 (279)
Q Consensus 135 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 214 (279)
|.+. .++ . +..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 97 N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIK-DLS-S-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCC-CCT-T-STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCC-CCh-h-hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 8886 554 2 4678888888888888874 3 4577788888888888888754 56778888888888888887555
Q ss_pred CccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccc
Q 041953 215 PRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYK 268 (279)
Q Consensus 215 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 268 (279)
| +..+++|+.|+|++|++.+. ..+..+++|+.|+|++|++.+.+...+..
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccccccc
Confidence 4 77888888888888888753 35788888888888888888765544433
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=4.4e-19 Score=140.07 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=133.8
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCC-ccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953 57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIP-SAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN 135 (279)
Q Consensus 57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 135 (279)
.++++++.++. +|..+. ..+++|++++|.+.+..+ ..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 67888888874 565553 467899999999986544 45789999999999999999777778999999999999999
Q ss_pred ccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccc
Q 041953 136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGE 213 (279)
Q Consensus 136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 213 (279)
.+. .++...|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+...
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 998 77777778999999999999999988888999999999999999999988889999999999999999998643
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=7.2e-19 Score=139.72 Aligned_cols=154 Identities=22% Similarity=0.256 Sum_probs=120.2
Q ss_pred CCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953 79 LQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158 (279)
Q Consensus 79 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 158 (279)
-+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 467888888776 566544 378889999999888777778888888888888888886 7777777788888888888
Q ss_pred cccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc
Q 041953 159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA 237 (279)
Q Consensus 159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 237 (279)
+|.+++..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 88887555566777888888888888887 5667777778888888888888765556677778888888888877643
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=8.1e-19 Score=153.12 Aligned_cols=98 Identities=23% Similarity=0.297 Sum_probs=62.6
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
.++++|++++|.+++ +| .+.++++|++|++++|.+.+ +|.. .++|++|++++|.+. .+| .+..+++|++|++
T Consensus 173 ~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l 244 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYA 244 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEEC
T ss_pred ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEEC
Confidence 478888888888875 45 57888888888888887763 3332 246777777777766 444 3666677777777
Q ss_pred eccccccccChhhhcCCCCCcEEEeeccccc
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFH 163 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 163 (279)
++|++. .+|. .+++|++|++++|.+.
T Consensus 245 ~~N~l~-~l~~----~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 245 DNNLLK-TLPD----LPPSLEALNVRDNYLT 270 (454)
T ss_dssp CSSCCS-SCCS----CCTTCCEEECCSSCCS
T ss_pred CCCcCC-cccc----cccccCEEECCCCccc
Confidence 777665 3332 1244444444444443
No 106
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=2.5e-18 Score=150.06 Aligned_cols=195 Identities=27% Similarity=0.389 Sum_probs=127.3
Q ss_pred CCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcE
Q 041953 50 VHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQY 129 (279)
Q Consensus 50 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 129 (279)
..++++++|++++|.+++ +|..+ .+|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|... ++|++
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~ 219 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLES 219 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCE
T ss_pred CCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccE
Confidence 445689999999998885 45433 589999999999884 55 58889999999999998874 44432 58999
Q ss_pred EEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCC--------------------cccc-
Q 041953 130 LDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN--------------------DFSG- 188 (279)
Q Consensus 130 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--------------------~~~~- 188 (279)
|++++|.+. .+|. +..+++|++|++++|.+.+ +|..+ ++|+.|++++| .+.+
T Consensus 220 L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 220 IVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPDLP---PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 292 (454)
T ss_dssp EECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCSCC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE
T ss_pred EECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-ccccc---cccCEEECCCCcccccCcccCcCCEEECcCCccCcc
Confidence 999999887 7774 4789999999999998873 44322 33444444444 4332
Q ss_pred -cCCcccC-------------CC-CCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEc
Q 041953 189 -VVPKEIC-------------NL-TKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQL 253 (279)
Q Consensus 189 -~~~~~l~-------------~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 253 (279)
..|..+. .+ ++|+.|++++|.+++ +|.. +++|+.|++++|+++ .+|. .+++|+.|++
T Consensus 293 ~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L 364 (454)
T 1jl5_A 293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHV 364 (454)
T ss_dssp SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred cCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEEC
Confidence 1111110 11 244555555555442 2322 356666666666665 3443 3567777788
Q ss_pred cCCcccc--cCccccccc
Q 041953 254 SDNFLTG--ITPSSIYKL 269 (279)
Q Consensus 254 ~~n~l~~--~~~~~~~~~ 269 (279)
++|++++ ..|.++..+
T Consensus 365 ~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 365 EYNPLREFPDIPESVEDL 382 (454)
T ss_dssp CSSCCSSCCCCCTTCCEE
T ss_pred CCCCCCcCCCChHHHHhh
Confidence 8777777 556666655
No 107
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=3.8e-22 Score=174.61 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=21.8
Q ss_pred CCCCCEEeccCCcCcc----cCCccccCCCCCCeEEccCCccccc
Q 041953 221 LAELELMSLSENELQG----AIPREWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 221 ~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
.++|++|++++|++++ .++..+..+++|++|++++|++++.
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 3455555555555543 3444455555555555555555544
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.9e-21 Score=170.16 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCccc----cCcccccCCCCCCEEEccCCcccCCCCcccc-----CCCCCcEEEcccCcccccC----Ccc
Q 041953 54 RVTVLNISRLNLTG----TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIF-----TTYTLKYVSFRKNQLSGAF----PSF 120 (279)
Q Consensus 54 ~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~----~~~ 120 (279)
++++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+.... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46677777766653 3456666666777777776666533222221 1345666666666655321 333
Q ss_pred CCCCCCCcEEEeeccccccccChhh----hcCCCCCcEEEeeccccccc----CCccCCCCccCcEEeccCCcccccC--
Q 041953 121 AFNTSSLQYLDFGFNTLSGEIPANI----CSNLPFLEYLALSQNMFHGG----IPSALSNCAYLQRLGLSSNDFSGVV-- 190 (279)
Q Consensus 121 ~~~l~~L~~L~l~~n~~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-- 190 (279)
+..+++|++|++++|.+....+..+ ....++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 4445666666666666542211111 11244566666665555431 2334444555555555555544321
Q ss_pred ---CcccCCCCCccEEEccCcccc
Q 041953 191 ---PKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 191 ---~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+..+..+++|+.|++++|.++
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCC
Confidence 111223444555555555444
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=1.6e-19 Score=146.44 Aligned_cols=169 Identities=20% Similarity=0.236 Sum_probs=128.6
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
.+++.++++++.+++.. .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+.. . +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEEC
Confidence 35666777888777433 5777888999999988887 444 5778888999999988887443 3 778888888888
Q ss_pred eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG 212 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 212 (279)
++|++. .++... . ++|++|++++|.+++ . ..+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+++
T Consensus 93 ~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 93 NRNRLK-NLNGIP--S-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CSSCCS-CCTTCC--C-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCccC-CcCccc--c-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 888887 555433 2 888888888888874 3 3577888888888888888754 3 57778888888888888875
Q ss_pred ccCccCCCCCCCCEEeccCCcCccc
Q 041953 213 EIPRESGNLAELELMSLSENELQGA 237 (279)
Q Consensus 213 ~~~~~~~~~~~L~~L~l~~n~i~~~ 237 (279)
. ..+..+++|+.|++++|++...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 5677888888888888888644
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.1e-18 Score=135.55 Aligned_cols=152 Identities=15% Similarity=0.182 Sum_probs=82.7
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcE
Q 041953 75 NLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEY 154 (279)
Q Consensus 75 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 154 (279)
.+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+ ..+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-cCCCCCCE
Confidence 3445555555555554 333 3555555555555555443 12344555566666666655553333333 45566666
Q ss_pred EEeecccccccCCccCCCCccCcEEeccCCc-ccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCc
Q 041953 155 LALSQNMFHGGIPSALSNCAYLQRLGLSSND-FSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENE 233 (279)
Q Consensus 155 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 233 (279)
|++++|.+.+..+..+..+++|++|++++|. +.+ .+ .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 6666666554445555566666666666665 442 23 45556666666666666653 22 55566677777777776
Q ss_pred Cc
Q 041953 234 LQ 235 (279)
Q Consensus 234 i~ 235 (279)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 64
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=4.3e-19 Score=143.97 Aligned_cols=148 Identities=22% Similarity=0.270 Sum_probs=118.6
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEE
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLD 131 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 131 (279)
.+++++|++++|.++. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|++.+ ++... . ++|++|+
T Consensus 40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEE
T ss_pred cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEE
Confidence 4578899999998874 44 688889999999999998844 33 8888999999999998874 44333 2 8899999
Q ss_pred eeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc
Q 041953 132 FGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 211 (279)
+++|.+. .++. +..+++|++|++++|.+++. + .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 113 L~~N~l~-~~~~--l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELR-DTDS--LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCS-BSGG--GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ccCCccC-CChh--hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 9999887 5543 47889999999999998743 3 678888999999999998865 66788889999999999887
Q ss_pred cc
Q 041953 212 GE 213 (279)
Q Consensus 212 ~~ 213 (279)
..
T Consensus 186 ~~ 187 (263)
T 1xeu_A 186 NE 187 (263)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=2.7e-20 Score=171.04 Aligned_cols=203 Identities=22% Similarity=0.241 Sum_probs=87.6
Q ss_pred CCCChhHHHHHHHHHHhccCCCcccccCCC-CCCCCCcceeeeeeCCCCCeEEEEEcCCCCccccCcccccCCCCCCEE-
Q 041953 5 TSTITTDRDALLALKAHITHDPTNFFAKNW-NTSTPVCNWTGVTCDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSL- 82 (279)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w-~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L- 82 (279)
.+..+.+..++..+...+. .+.+.....| ..+.....|.+..+.. ++++.|++.++.+.. .+..+-....|+.+
T Consensus 127 ~s~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~ 202 (727)
T 4b8c_D 127 KSLVDCTKQALMEMADTLT-DSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYS 202 (727)
T ss_dssp -----CCCHHHHHHHHHHH-HHHTTC------------------------------------------------------
T ss_pred hhccccchhhhhhhhhhcc-cccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCccc
Confidence 3445667788888887764 2222222445 3334556677666543 467777777776653 22222222222222
Q ss_pred ----EccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953 83 ----NLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158 (279)
Q Consensus 83 ----~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 158 (279)
++..|.+. ..++.+..+++|+.|+|++|.+. .++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|+
T Consensus 203 i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls 278 (727)
T 4b8c_D 203 IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLS 278 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECT
T ss_pred ccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCc
Confidence 22223332 34555666667777777777666 55555556677777777777666 666554 566777777777
Q ss_pred cccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCcc
Q 041953 159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRE 217 (279)
Q Consensus 159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 217 (279)
+|.++ .+|..+..+++|++|+|++|.+. .+|..+..+++|+.|++++|.+++.+|..
T Consensus 279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 279 HNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp TSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 77766 55666666667777777777665 45555666667777777777666544443
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=3.1e-18 Score=152.60 Aligned_cols=167 Identities=27% Similarity=0.359 Sum_probs=141.1
Q ss_pred CeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 53 HRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 53 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
+++++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|++|++++|.+.+ +|. .+++|++|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 57999999999998 566 457899999999999985 676 554 99999999999985 566 6899999999
Q ss_pred eccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCc-------cEEEc
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKL-------KGLYL 205 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L-------~~L~l 205 (279)
++|.+. .+|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++
T Consensus 148 s~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 148 DNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEEC
T ss_pred CCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEec
Confidence 999998 5775 57899999999999985 666 65 89999999999998 5665 554 67 99999
Q ss_pred cCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCC
Q 041953 206 GGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNL 245 (279)
Q Consensus 206 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 245 (279)
++|.++ .+|..+..+++|+.|+|++|++++..|..+..+
T Consensus 215 s~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 999998 678888889999999999999998888776654
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=2.5e-17 Score=127.24 Aligned_cols=130 Identities=25% Similarity=0.290 Sum_probs=95.4
Q ss_pred cEEEcccCcccccCCccCCCCCCCcEEEeeccccccccCh-hhhcCCCCCcEEEeecccccccCCccCCCCccCcEEecc
Q 041953 104 KYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPA-NICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLS 182 (279)
Q Consensus 104 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 182 (279)
+.++++++.+. .+|..+.. ++++|++++|.+. .++. ..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67788888776 55654432 7788888888776 4443 345677888888888888776667777777788888888
Q ss_pred CCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCccc
Q 041953 183 SNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGA 237 (279)
Q Consensus 183 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 237 (279)
+|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 8877766666677777788888888877777777777777788888877777644
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.8e-17 Score=138.74 Aligned_cols=219 Identities=15% Similarity=0.089 Sum_probs=141.6
Q ss_pred CCeEEEEEcCCCCcc--------------------ccCcccccC--------CCCCCEEEccCCcccCCCCccccCCCCC
Q 041953 52 SHRVTVLNISRLNLT--------------------GTIPSQLGN--------LSSLQSLNLSCNRLSGSIPSAIFTTYTL 103 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~--------------------~~~~~~~~~--------l~~L~~L~l~~~~i~~~~~~~~~~~~~L 103 (279)
.++|+.|+|++|.+. .+...+|.+ +++|+.|+++. .+......+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 457889999988877 222334455 56666666665 5544444556666666
Q ss_pred cEEEcccCcccccCCccCCCCCCCcEEEeeccccc---cccChhhhcCCCCCc--------------------------E
Q 041953 104 KYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLS---GEIPANICSNLPFLE--------------------------Y 154 (279)
Q Consensus 104 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~~~~~L~--------------------------~ 154 (279)
+.+++.+|.+....+..|..+.++..+........ ..+....|.++..|+ .
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 66666666555444444555444444433321110 011112222222232 2
Q ss_pred EEeecccccccCCccC-CCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCC-EEeccCC
Q 041953 155 LALSQNMFHGGIPSAL-SNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELE-LMSLSEN 232 (279)
Q Consensus 155 L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n 232 (279)
+.+.++-.. .....+ ..+++|+.+++++|.+.......|.++.+|+.+++.+| ++...+..|.++++|+ .+++.+
T Consensus 207 l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 207 LTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred EEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 222111000 000000 12678999999999998777788999999999999998 6667778899999999 999998
Q ss_pred cCcccCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953 233 ELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274 (279)
Q Consensus 233 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 274 (279)
+++.+.+.+|.+|++|+.+++.+|.++.+.+.+|.++++++.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 777677889999999999999999999999999999987764
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=2.2e-20 Score=166.85 Aligned_cols=183 Identities=19% Similarity=0.154 Sum_probs=150.9
Q ss_pred cCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCc-------------ccccCCccCCCCCCCcEEE-eecccccc
Q 041953 74 GNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ-------------LSGAFPSFAFNTSSLQYLD-FGFNTLSG 139 (279)
Q Consensus 74 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~n~~~~ 139 (279)
..++.|+.|++++|.+. .+|..+..+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788999999999997 789999999999999987664 3345556667778888887 5655443
Q ss_pred ccChhhh-----c--CCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccc
Q 041953 140 EIPANIC-----S--NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQG 212 (279)
Q Consensus 140 ~~~~~~~-----~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 212 (279)
.++...+ . ....|+.|++++|.++ .+|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 2222110 0 1235899999999998 4675 899999999999999999 788899999999999999999985
Q ss_pred ccCccCCCCCCCCEEeccCCcCcccC-CccccCCCCCCeEEccCCcccccCc
Q 041953 213 EIPRESGNLAELELMSLSENELQGAI-PREWGNLTGLGILQLSDNFLTGITP 263 (279)
Q Consensus 213 ~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (279)
+| .+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++.+|
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 66 8999999999999999999776 8999999999999999999999876
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=3.3e-17 Score=137.15 Aligned_cols=77 Identities=17% Similarity=0.047 Sum_probs=69.1
Q ss_pred CCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCC-eEEccCCcccccCccccccccccccc
Q 041953 197 LTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLG-ILQLSDNFLTGITPSSIYKLLFSIKF 275 (279)
Q Consensus 197 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~ 275 (279)
+++|+.+++++|.++...+..|.++++|+.+++.+| ++.+.+.+|.+|++|+ .+++.+ .++.+.+.+|..|..+...
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 679999999999998777788999999999999998 7777788999999999 999998 8999999999999776653
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=3.6e-17 Score=123.54 Aligned_cols=133 Identities=23% Similarity=0.173 Sum_probs=66.3
Q ss_pred CCcEEEeeccccc-cccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEE
Q 041953 126 SLQYLDFGFNTLS-GEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLY 204 (279)
Q Consensus 126 ~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 204 (279)
+|++|++++|.+. +.+|..+ ..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3444444444433 2333221 3344444444444444422 3444455555555555555443444444455555555
Q ss_pred ccCccccccc-CccCCCCCCCCEEeccCCcCcccCC---ccccCCCCCCeEEccCCccccc
Q 041953 205 LGGNRLQGEI-PRESGNLAELELMSLSENELQGAIP---REWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 205 l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
+++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 5555554321 1455556666666666666654333 3556666666666666665554
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=123.08 Aligned_cols=127 Identities=24% Similarity=0.244 Sum_probs=87.4
Q ss_pred cEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccC
Q 041953 104 KYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSS 183 (279)
Q Consensus 104 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 183 (279)
+.++++++.+. .+|..+ .++|++|++++|.+. .+|. .|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46777777776 455443 256777777777776 6664 346777777777777777755556677777777777777
Q ss_pred CcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCc
Q 041953 184 NDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQ 235 (279)
Q Consensus 184 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 235 (279)
|.+....+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777666666777777777777777776555555666777777777777664
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=3e-20 Score=166.01 Aligned_cols=194 Identities=23% Similarity=0.213 Sum_probs=155.2
Q ss_pred CCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCc-------------ccCCCCccccCCCCCcEEE-cccCcccccC
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNR-------------LSGSIPSAIFTTYTLKYVS-FRKNQLSGAF 117 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-------------i~~~~~~~~~~~~~L~~L~-l~~n~~~~~~ 117 (279)
.+.++.|++++|.++ .+|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.. +
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-L 425 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-H
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-h
Confidence 345667888888887 679999999999999997664 3445667778888888888 55553321 0
Q ss_pred Cc------cCC--CCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccccc
Q 041953 118 PS------FAF--NTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGV 189 (279)
Q Consensus 118 ~~------~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 189 (279)
+. .+. ....|+.|++++|.+. .+|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhcccccccCccCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 00 000 1135899999999998 6776 588999999999999999 889999999999999999999995
Q ss_pred CCcccCCCCCccEEEccCccccccc-CccCCCCCCCCEEeccCCcCcccCCc---cccCCCCCCeEEc
Q 041953 190 VPKEICNLTKLKGLYLGGNRLQGEI-PRESGNLAELELMSLSENELQGAIPR---EWGNLTGLGILQL 253 (279)
Q Consensus 190 ~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~---~~~~~~~L~~L~l 253 (279)
+| .+..+++|+.|++++|.+++.. |..+..+++|+.|+|++|++++..|. .+..+++|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 56 7899999999999999999776 89999999999999999999866553 2345889998864
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=2.2e-18 Score=158.42 Aligned_cols=182 Identities=24% Similarity=0.276 Sum_probs=123.2
Q ss_pred cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhc
Q 041953 68 TIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICS 147 (279)
Q Consensus 68 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 147 (279)
..+..|..+..|+.|++++|.+. .++..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+ .
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL-G 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG-G
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh-c
Confidence 45778899999999999999998 77877889999999999999999 88999999999999999999998 888776 7
Q ss_pred CCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCC-CccEEEccCcccccccCccCCCCCCCCE
Q 041953 148 NLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLT-KLKGLYLGGNRLQGEIPRESGNLAELEL 226 (279)
Q Consensus 148 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 226 (279)
++++|++|++++|.+. .+|..|..+++|+.|+|++|.+.+..|..+.... ....+++++|.+++.+|. .|..
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~ 363 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRF 363 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccce
Confidence 8999999999999998 7788899999999999999999987777665432 223477889998876664 4556
Q ss_pred EeccCC--------cCcccCCccccCCCCCCeEEccCCcccc
Q 041953 227 MSLSEN--------ELQGAIPREWGNLTGLGILQLSDNFLTG 260 (279)
Q Consensus 227 L~l~~n--------~i~~~~~~~~~~~~~L~~L~l~~n~l~~ 260 (279)
|+++.| .+.+..+..+..+..+....+++|-+.+
T Consensus 364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp --------------------------------------CCCG
T ss_pred eEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 667666 3333334445566677777888887753
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.8e-16 Score=122.36 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=107.2
Q ss_pred CEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCc-cCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953 80 QSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPS-FAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158 (279)
Q Consensus 80 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 158 (279)
+.++++++.+. .+|..+. .+|++|++++|.+.+..+. .+..+++|++|++++|.+. .++...|.++++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECC
Confidence 67889888886 6666443 3899999999998855554 4788899999999999987 5544555889999999999
Q ss_pred cccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCccccccc
Q 041953 159 QNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEI 214 (279)
Q Consensus 159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 214 (279)
+|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 99998777777888899999999999998888888888899999999999887543
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=2.7e-16 Score=119.73 Aligned_cols=131 Identities=24% Similarity=0.240 Sum_probs=69.8
Q ss_pred cEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccC
Q 041953 128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207 (279)
Q Consensus 128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 207 (279)
+.++++++.+. .+|... .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 34444444443 444322 24455555555555533333445555555555555555544444455555666666666
Q ss_pred cccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccC
Q 041953 208 NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGIT 262 (279)
Q Consensus 208 n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 262 (279)
|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 6655444444555666666666666665444444555666666666666665543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=2e-16 Score=119.43 Aligned_cols=131 Identities=20% Similarity=0.171 Sum_probs=69.1
Q ss_pred CCCCEEEccCCccc-CCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEE
Q 041953 77 SSLQSLNLSCNRLS-GSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYL 155 (279)
Q Consensus 77 ~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 155 (279)
++|++|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|. .+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEE
Confidence 55666666666665 45555556666666666666666533 5555666666666666666532333 22446666666
Q ss_pred EeecccccccC-CccCCCCccCcEEeccCCcccccCC---cccCCCCCccEEEccCccc
Q 041953 156 ALSQNMFHGGI-PSALSNCAYLQRLGLSSNDFSGVVP---KEICNLTKLKGLYLGGNRL 210 (279)
Q Consensus 156 ~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~~ 210 (279)
++++|.+++.. +..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 66666555221 1344444555555555554443222 1334444444444444443
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=7.8e-16 Score=118.86 Aligned_cols=127 Identities=22% Similarity=0.281 Sum_probs=102.2
Q ss_pred EEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953 56 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN 135 (279)
Q Consensus 56 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 135 (279)
+.++++++.++ .+|..+. ++|++|++++|.+. .+|..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35778888887 4555443 68999999999998 67788889999999999999998776777888899999999999
Q ss_pred ccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc
Q 041953 136 TLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS 187 (279)
Q Consensus 136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (279)
.+. .++...|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 887 666666688888888888888888555556777888888888888765
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.2e-16 Score=118.22 Aligned_cols=126 Identities=20% Similarity=0.173 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCcc-ccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEe
Q 041953 54 RVTVLNISRLNLT-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDF 132 (279)
Q Consensus 54 ~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 132 (279)
+++.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~----------- 84 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA----------- 84 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-----------
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-----------
Confidence 4555555555554 34444445555555555555555422 334444455555555554443333333
Q ss_pred eccccccccChhhhcCCCCCcEEEeeccccccc-CCccCCCCccCcEEeccCCcccccCC---cccCCCCCccEEEcc
Q 041953 133 GFNTLSGEIPANICSNLPFLEYLALSQNMFHGG-IPSALSNCAYLQRLGLSSNDFSGVVP---KEICNLTKLKGLYLG 206 (279)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~ 206 (279)
..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 85 --------------~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 --------------EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp --------------HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred --------------hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 3445555555555554421 12344445555555555555543332 234445555555543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=1.6e-16 Score=117.45 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=60.1
Q ss_pred CCCcEEEcccCccc-ccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEE
Q 041953 101 YTLKYVSFRKNQLS-GAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRL 179 (279)
Q Consensus 101 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 179 (279)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+. .+ ..+..+++|++|++++|.+.+..|..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~--------- 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLA--------- 84 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHH---------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHh---------
Confidence 34455555555444 334444444445555555544443 22 122344445555555444443333333
Q ss_pred eccCCcccccCCcccCCCCCccEEEccCcccccc-cCccCCCCCCCCEEeccCCcCcccCC---ccccCCCCCCeEEcc
Q 041953 180 GLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGE-IPRESGNLAELELMSLSENELQGAIP---REWGNLTGLGILQLS 254 (279)
Q Consensus 180 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~ 254 (279)
..+++|+.|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 85 ---------------~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 ---------------EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ---------------HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ---------------hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 3344455555555554432 12445555555666666555554433 345555666666554
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=9.5e-15 Score=125.20 Aligned_cols=207 Identities=13% Similarity=0.092 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG 133 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 133 (279)
+|+.+.+.. .+..+...+|.++.+|+.++++.|.+.......|. +.+|+.+.+..+ +.......|..+++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 355555554 44445555666666666666666666533333333 566666666533 444445566677777777776
Q ss_pred ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc-----ccCCcccCCCCCccEEEccCc
Q 041953 134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS-----GVVPKEICNLTKLKGLYLGGN 208 (279)
Q Consensus 134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~l~~~~~L~~L~l~~n 208 (279)
.+ +. .+....|.+ .+|+.+.+.. .+......+|..+++|+.+.+.++.+. .....+|.++++|+.+.+.+
T Consensus 235 ~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp TT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 54 33 566666665 6677777743 344455677888888999888877654 35567788888899998884
Q ss_pred ccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccc
Q 041953 209 RLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 270 (279)
.++......|.++.+|+.+.|..+ ++.+...+|.++ +|+.+++.+|.+....+..|..++
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 466566778888899999999655 665667788888 999999999988888887777764
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=4e-15 Score=113.19 Aligned_cols=127 Identities=22% Similarity=0.255 Sum_probs=80.9
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc
Q 041953 57 VLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT 136 (279)
Q Consensus 57 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 136 (279)
.+++++++++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3444555555 334333 2577888888887775555556777777777777777775544556677777777777777
Q ss_pred cccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCccc
Q 041953 137 LSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFS 187 (279)
Q Consensus 137 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (279)
+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 88 l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 76 555555566677777777777666443344556666666666666655
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.4e-15 Score=115.74 Aligned_cols=131 Identities=18% Similarity=0.145 Sum_probs=71.4
Q ss_pred ccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCC
Q 041953 73 LGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFL 152 (279)
Q Consensus 73 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 152 (279)
+.++.+|+.|++++|.+. .++......++|++|++++|.+.+. ..+..+++|++|++++|.+. .++...+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 445566666666666666 3333222233666666666666643 45556666666666666665 5555554556666
Q ss_pred cEEEeecccccccCCc--cCCCCccCcEEeccCCcccccCCc----ccCCCCCccEEEccCcc
Q 041953 153 EYLALSQNMFHGGIPS--ALSNCAYLQRLGLSSNDFSGVVPK----EICNLTKLKGLYLGGNR 209 (279)
Q Consensus 153 ~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l~~n~ 209 (279)
++|++++|.+. .++. .+..+++|+.|++++|.+.. .|. .+..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 66666666664 3333 44455555555555555542 222 13344444444444443
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=9.5e-16 Score=116.61 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=60.8
Q ss_pred CCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCc--cCCCCCCCCEEe
Q 041953 151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPR--ESGNLAELELMS 228 (279)
Q Consensus 151 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~ 228 (279)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 555555555555432 34555556666666666665433333355666666666666664 3333 555666677777
Q ss_pred ccCCcCcccCCc----cccCCCCCCeEEccCCcccc
Q 041953 229 LSENELQGAIPR----EWGNLTGLGILQLSDNFLTG 260 (279)
Q Consensus 229 l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l~~ 260 (279)
+++|++. ..|. .+..+++|+.|++++|.+..
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7777665 3343 36666777777777766544
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=3.6e-14 Score=121.57 Aligned_cols=208 Identities=13% Similarity=0.095 Sum_probs=157.5
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEee
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFG 133 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 133 (279)
+++.+.+..+ ++.+...+|.++ +|+.+.+.. .+......+|..|++|+.+++.+|++.......| ...+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-VYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-TTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE-eecccCEEEeC
Confidence 4666777655 555666677774 688888876 5554566788888899999998888874444444 46888888887
Q ss_pred ccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccc--
Q 041953 134 FNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQ-- 211 (279)
Q Consensus 134 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~-- 211 (279)
.+ +. .++...|.++++|+.+++..+ +......+|.. .+|+.+.+. +.+......+|.++++|+.+.+.++.+.
T Consensus 212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 54 54 788888888999999999875 44345566766 678888884 4455566788899999999999887764
Q ss_pred ---cccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCccccccccccc
Q 041953 212 ---GEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 212 ---~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
...+..|.++++|+.+++.+ .++.+...+|.+|++|+.+.+.. .++.+.+.+|..+ .+.
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIK 348 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCC
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCC
Confidence 35667889999999999994 57767778899999999999955 4888888888888 544
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=3.1e-17 Score=147.80 Aligned_cols=212 Identities=14% Similarity=0.122 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCccccCc-ccccCCCCCCEEEccCCcccC-CCCccccCCCCCcEEEccc-----------Cccccc-CCc
Q 041953 54 RVTVLNISRLNLTGTIP-SQLGNLSSLQSLNLSCNRLSG-SIPSAIFTTYTLKYVSFRK-----------NQLSGA-FPS 119 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~-----------n~~~~~-~~~ 119 (279)
++++|++++|.+++... ..+..+++|++|+++ +.+.+ ..+..+..+++|++|++++ +.++.. +..
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 45555555555432211 223445555555555 22221 1222223455566666662 233211 111
Q ss_pred cCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee----ccccccc-----CCccCCCCccCcEEeccCCc--ccc
Q 041953 120 FAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS----QNMFHGG-----IPSALSNCAYLQRLGLSSND--FSG 188 (279)
Q Consensus 120 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L~~L~l~~n~--~~~ 188 (279)
....+++|++|+++.+.+.+..+..+...+++|+.|++. .+.+++. ++..+..+++|+.|+++.|. +.+
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 123456677777766666544444443446777777775 3344421 11224456778888886433 443
Q ss_pred cCCccc-CCCCCccEEEccCccccc-ccCccCCCCCCCCEEeccCCcCccc-CCccccCCCCCCeEEccCCcccccCccc
Q 041953 189 VVPKEI-CNLTKLKGLYLGGNRLQG-EIPRESGNLAELELMSLSENELQGA-IPREWGNLTGLGILQLSDNFLTGITPSS 265 (279)
Q Consensus 189 ~~~~~l-~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 265 (279)
.....+ ..+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++.....+++|+.|++++|+++......
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~ 532 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL 532 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTG
T ss_pred HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHH
Confidence 333333 236788999999888765 3344557788999999999987643 3344567889999999999988764443
Q ss_pred c
Q 041953 266 I 266 (279)
Q Consensus 266 ~ 266 (279)
+
T Consensus 533 l 533 (592)
T 3ogk_B 533 M 533 (592)
T ss_dssp G
T ss_pred H
Confidence 3
No 134
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=7.5e-17 Score=145.27 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=57.6
Q ss_pred EEEEEcCCCC-ccc-cCcccccCCCCCCEEEccCCcccCC----CCccccCCCCCcEEEcccCccc----ccCCccCCCC
Q 041953 55 VTVLNISRLN-LTG-TIPSQLGNLSSLQSLNLSCNRLSGS----IPSAIFTTYTLKYVSFRKNQLS----GAFPSFAFNT 124 (279)
Q Consensus 55 l~~L~l~~~~-l~~-~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l 124 (279)
+++|++++|. +.. .++.....+++|++|++++|.+.+. ++..+..+++|++|++++|.+. ..++..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 7777777765 211 1222233567777777777766543 2223445667777777777665 1223334456
Q ss_pred CCCcEEEeeccccccccChhhhcCCCCCcEEEee
Q 041953 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS 158 (279)
Q Consensus 125 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 158 (279)
++|++|++++|.+. .++.. +..+++|++|+++
T Consensus 220 ~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGG 251 (592)
T ss_dssp TTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEEC
T ss_pred CCCcEEeccCccHH-HHHHH-HhhhhHHHhhccc
Confidence 67777777776665 34432 3555666666654
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=1.7e-17 Score=128.79 Aligned_cols=130 Identities=23% Similarity=0.258 Sum_probs=67.7
Q ss_pred CCCCCEEEccCCcccCCCCc------cccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCC
Q 041953 76 LSSLQSLNLSCNRLSGSIPS------AIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNL 149 (279)
Q Consensus 76 l~~L~~L~l~~~~i~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 149 (279)
...++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|... ..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~ 92 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVA 92 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcC
Confidence 34455555555555444443 56666666666666666653 34 5555666666666666665 455433 344
Q ss_pred CCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCC-cccCCCCCccEEEccCcccc
Q 041953 150 PFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVP-KEICNLTKLKGLYLGGNRLQ 211 (279)
Q Consensus 150 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~ 211 (279)
++|++|++++|.+++ ++ .+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 556666666665552 22 34444555555555555442211 23344444444444444443
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=5.5e-14 Score=106.20 Aligned_cols=106 Identities=24% Similarity=0.250 Sum_probs=51.5
Q ss_pred cEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCC
Q 041953 153 EYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232 (279)
Q Consensus 153 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 232 (279)
+.+++++|.++ .+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34444444444 2333221 34455555555555444444555555555555555555443444445555555555555
Q ss_pred cCcccCCccccCCCCCCeEEccCCccccc
Q 041953 233 ELQGAIPREWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 233 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
++++..+..|..+++|+.|++++|++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 55544444455555555555555555433
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=4.2e-17 Score=126.58 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=54.8
Q ss_pred cCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCC
Q 041953 120 FAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTK 199 (279)
Q Consensus 120 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 199 (279)
.+..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ .| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 4445555555555555554 344 2244555555555555554 344444444555555555555543 22 3444455
Q ss_pred ccEEEccCcccccccC-ccCCCCCCCCEEeccCCcCcc
Q 041953 200 LKGLYLGGNRLQGEIP-RESGNLAELELMSLSENELQG 236 (279)
Q Consensus 200 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~ 236 (279)
|+.|++++|.+++..+ ..+..+++|++|++++|++.+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 5555555555542211 234455555555555555543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=9.3e-14 Score=105.31 Aligned_cols=104 Identities=24% Similarity=0.235 Sum_probs=55.9
Q ss_pred cEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccC
Q 041953 128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207 (279)
Q Consensus 128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 207 (279)
+.++++++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45556666554 555433 25555666666555544455555555555555555555544334445555555555555
Q ss_pred cccccccCccCCCCCCCCEEeccCCcCc
Q 041953 208 NRLQGEIPRESGNLAELELMSLSENELQ 235 (279)
Q Consensus 208 n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 235 (279)
|.+++..+..+..+++|+.|+|++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 5555333334555555555555555554
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.47 E-value=2.9e-16 Score=141.47 Aligned_cols=212 Identities=15% Similarity=0.072 Sum_probs=138.3
Q ss_pred CCeEEEEEcCCCCccccC-cccccCCCCCCEEEccCCcccCC-CCccccCCCCCcEEEccc---------CcccccCCcc
Q 041953 52 SHRVTVLNISRLNLTGTI-PSQLGNLSSLQSLNLSCNRLSGS-IPSAIFTTYTLKYVSFRK---------NQLSGAFPSF 120 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~l~~---------n~~~~~~~~~ 120 (279)
+++|++|++++|.++... ...+..+++|++|++++| +.+. .+.....+++|++|++.+ +.++......
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 357888888888865432 233557788888888887 4322 222233578888888844 2332111111
Q ss_pred C-CCCCCCcEEEeeccccccccChhhhcCCCCCcEEEee--c----cccccc-----CCccCCCCccCcEEeccCCcccc
Q 041953 121 A-FNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALS--Q----NMFHGG-----IPSALSNCAYLQRLGLSSNDFSG 188 (279)
Q Consensus 121 ~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~--~----n~l~~~-----~~~~l~~l~~L~~L~l~~n~~~~ 188 (279)
+ ..+++|++|.+..+.+.......+...+++|+.|++. + +.++.. ++..+..+++|+.|++++ .+.+
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 1 2478899998888887755445554568899999998 3 334311 111245677899999977 5554
Q ss_pred cCCcccCC-CCCccEEEccCcccccccCccC-CCCCCCCEEeccCCcCcccCCc-cccCCCCCCeEEccCCcccccCccc
Q 041953 189 VVPKEICN-LTKLKGLYLGGNRLQGEIPRES-GNLAELELMSLSENELQGAIPR-EWGNLTGLGILQLSDNFLTGITPSS 265 (279)
Q Consensus 189 ~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~ 265 (279)
.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|+.|++++|+++......
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 525 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKL 525 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHH
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHH
Confidence 44444443 7789999999999865544433 5678999999999998644333 3456889999999999885544333
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=4.9e-13 Score=100.91 Aligned_cols=105 Identities=23% Similarity=0.229 Sum_probs=75.0
Q ss_pred EEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeec
Q 041953 55 VTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGF 134 (279)
Q Consensus 55 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 134 (279)
.+.++++++.++. +|..+. ++|++|++++|.+.+..+..|..+++|++|++++|++.+..+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3467778887773 554442 6788888888888766677777788888888888877755555567777777777777
Q ss_pred cccccccChhhhcCCCCCcEEEeeccccc
Q 041953 135 NTLSGEIPANICSNLPFLEYLALSQNMFH 163 (279)
Q Consensus 135 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 163 (279)
|++. .++...|..+++|++|++++|.+.
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7776 666665567777777777777665
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=1.6e-15 Score=136.52 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCeEEEEEcCCCCccccCccccc-CCCCCCEEEccCC-cccCC-CCccccCCCCCcEEEcccCcccccCC----ccCCCC
Q 041953 52 SHRVTVLNISRLNLTGTIPSQLG-NLSSLQSLNLSCN-RLSGS-IPSAIFTTYTLKYVSFRKNQLSGAFP----SFAFNT 124 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~-~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l 124 (279)
++++++|+++++.+++..+..+. .+++|++|++++| .+.+. .+..+..+++|++|++++|.+.+..+ .....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 45788888888877765555554 5778888888887 44422 33334467888888888887654332 223366
Q ss_pred CCCcEEEeeccc--cccccChhhhcCCCCCcEEEeecc
Q 041953 125 SSLQYLDFGFNT--LSGEIPANICSNLPFLEYLALSQN 160 (279)
Q Consensus 125 ~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~n 160 (279)
++|++|++++|. +.......+...+++|++|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 788888887775 221112222344677777777766
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=7.9e-13 Score=100.15 Aligned_cols=104 Identities=24% Similarity=0.313 Sum_probs=74.7
Q ss_pred EEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeecc
Q 041953 56 TVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFN 135 (279)
Q Consensus 56 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 135 (279)
+.++++++.++ .+|..+. ++|+.|++++|.+.+..|..|..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46788888876 4555443 67888888888887666777777888888888888777544445667777777777777
Q ss_pred ccccccChhhhcCCCCCcEEEeeccccc
Q 041953 136 TLSGEIPANICSNLPFLEYLALSQNMFH 163 (279)
Q Consensus 136 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 163 (279)
++. .++...|..+++|++|++++|.+.
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 776 666665566777777777777665
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=1.6e-15 Score=128.73 Aligned_cols=162 Identities=21% Similarity=0.164 Sum_probs=91.4
Q ss_pred CCCCEEEccCCcccCCCCccccC-----CCCCcEEEcccCcccccCCccC-CCCCCCcEEEeeccccccccChhh----h
Q 041953 77 SSLQSLNLSCNRLSGSIPSAIFT-----TYTLKYVSFRKNQLSGAFPSFA-FNTSSLQYLDFGFNTLSGEIPANI----C 146 (279)
Q Consensus 77 ~~L~~L~l~~~~i~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~----~ 146 (279)
+.|+.|++++|.++......+.. .++|+.|++++|.+.......+ ..+++|++|++++|.+.......+ .
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56778888888776432222222 2577788888777653222221 234567777777777653211111 1
Q ss_pred cCCCCCcEEEeecccccc----cCCccCCCCccCcEEeccCCcccccC----CcccCCCCCccEEEccCcccccc----c
Q 041953 147 SNLPFLEYLALSQNMFHG----GIPSALSNCAYLQRLGLSSNDFSGVV----PKEICNLTKLKGLYLGGNRLQGE----I 214 (279)
Q Consensus 147 ~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~----~ 214 (279)
...++|++|++++|.+++ .++..+..+++|++|++++|.+.+.. ...+...++|+.|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 235667777777777653 22333455666777777777765422 33444555677777777766532 2
Q ss_pred CccCCCCCCCCEEeccCCcCcccC
Q 041953 215 PRESGNLAELELMSLSENELQGAI 238 (279)
Q Consensus 215 ~~~~~~~~~L~~L~l~~n~i~~~~ 238 (279)
+..+...+.|++|+|++|.|.+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHH
Confidence 223334466777777777665433
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=8.7e-15 Score=124.24 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=58.9
Q ss_pred CCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccC-----CCCccCcEEeccCCccccc----CCcccC
Q 041953 125 SSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSAL-----SNCAYLQRLGLSSNDFSGV----VPKEIC 195 (279)
Q Consensus 125 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~----~~~~l~ 195 (279)
++|++|++++|.+.......+...+++|++|++++|.+.+.....+ ...+.|++|++++|.+++. +...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3455555555544322222222233445555555554432211111 1234455555555554321 112223
Q ss_pred CCCCccEEEccCcccccc----cCccCCCCCCCCEEeccCCcCccc----CCccccCCCCCCeEEccCCcccccCcccc
Q 041953 196 NLTKLKGLYLGGNRLQGE----IPRESGNLAELELMSLSENELQGA----IPREWGNLTGLGILQLSDNFLTGITPSSI 266 (279)
Q Consensus 196 ~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 266 (279)
..++|++|++++|.+.+. ++..+...++|+.|+|++|.+++. ++..+..+++|++|++++|+++......+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 344455555555554321 122333344555555555554432 11223334455555555555544443333
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=5.5e-12 Score=106.06 Aligned_cols=103 Identities=19% Similarity=0.142 Sum_probs=62.5
Q ss_pred EEEeecc-ccccccChhhhcCCCCCcEEEeec-ccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEcc
Q 041953 129 YLDFGFN-TLSGEIPANICSNLPFLEYLALSQ-NMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLG 206 (279)
Q Consensus 129 ~L~l~~n-~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 206 (279)
.++.+++ .+. .+|. +..+.+|++|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..|..|.++++|+.|+++
T Consensus 12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3455555 555 5665 35666666666664 66665555566666666666666666666556666666666666666
Q ss_pred CcccccccCccCCCCCCCCEEeccCCcCc
Q 041953 207 GNRLQGEIPRESGNLAELELMSLSENELQ 235 (279)
Q Consensus 207 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 235 (279)
+|.+++..+..+..++ |+.|+|.+|++.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666644444444433 666666666664
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=2.4e-11 Score=102.19 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=79.0
Q ss_pred EcCCC-CccccCcccccCCCCCCEEEccC-CcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccc
Q 041953 59 NISRL-NLTGTIPSQLGNLSSLQSLNLSC-NRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNT 136 (279)
Q Consensus 59 ~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 136 (279)
+.+++ +++ .+|. +..+.+|+.|++++ |.+.+..+..|..+++|+.|+|++|++.+..+..|..+++|++|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44555 566 3666 88888888888885 88886666778888888888888888887777778888888888888888
Q ss_pred cccccChhhhcCCCCCcEEEeeccccc
Q 041953 137 LSGEIPANICSNLPFLEYLALSQNMFH 163 (279)
Q Consensus 137 ~~~~~~~~~~~~~~~L~~L~l~~n~l~ 163 (279)
+. .+|...|..++ |+.|++.+|.+.
T Consensus 92 l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 87 77777666555 888888888765
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.18 E-value=6.1e-10 Score=95.25 Aligned_cols=100 Identities=12% Similarity=0.046 Sum_probs=59.5
Q ss_pred cCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCC
Q 041953 169 ALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGL 248 (279)
Q Consensus 169 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L 248 (279)
.+..+.+|+.+.+..+ +......+|.++.+|+.+.+..+ ++......|.++.+|+.+.+..+ ++.+...+|.+|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3445556666666543 33344556666777777777543 44445566777777777777665 554556677777777
Q ss_pred CeEEccCCcccccCccccccccccc
Q 041953 249 GILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 249 ~~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
+.+++..+ +... ..+|.++.+++
T Consensus 369 ~~i~lp~~-~~~~-~~~F~~c~~L~ 391 (394)
T 4fs7_A 369 KKVELPKR-LEQY-RYDFEDTTKFK 391 (394)
T ss_dssp CEEEEEGG-GGGG-GGGBCTTCEEE
T ss_pred CEEEECCC-CEEh-hheecCCCCCc
Confidence 77777544 2222 34566665443
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.08 E-value=2.9e-09 Score=91.04 Aligned_cols=214 Identities=14% Similarity=0.088 Sum_probs=164.3
Q ss_pred eCCCCCeEEEEEcCCCCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcccccCCccCCCCCCC
Q 041953 48 CDVHSHRVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSL 127 (279)
Q Consensus 48 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 127 (279)
+...+..|+.+.+.++. ..+....|.++.+|+.+.+..+ +.......|..+..|+.+.+..+... +........+|
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCC
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCC
Confidence 34566789999998664 4466788999999999999876 44355678889999999888775432 23444466789
Q ss_pred cEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccC
Q 041953 128 QYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGG 207 (279)
Q Consensus 128 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 207 (279)
+.+.+.... . .+....|..+..++.+.+..+... .....+..+..++.+......+. ...+..+.+|+.+.+.+
T Consensus 233 ~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 233 KNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT
T ss_pred ceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc
Confidence 999886543 2 566777788999999999877544 55667888888988887765433 35677888999999976
Q ss_pred cccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccccccc
Q 041953 208 NRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLLFSIK 274 (279)
Q Consensus 208 n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 274 (279)
+ ++......|.++.+|+.++|.++ ++.+...+|.+|.+|+.+++..+ ++.+...+|..|.++++
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 5 55466678899999999999755 66677789999999999999876 88899999999877654
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.08 E-value=5.8e-09 Score=89.17 Aligned_cols=100 Identities=14% Similarity=0.201 Sum_probs=45.8
Q ss_pred CCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCC
Q 041953 170 LSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLG 249 (279)
Q Consensus 170 l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 249 (279)
|..+..|+.+.+..+-.. .....|.++..|+.+.+.. .++......|.++.+|+.+.|.++ ++.+...+|.+|.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 334444444444332211 2233344444444444432 222233344555555555555543 3334444555555565
Q ss_pred eEEccCCcccccCccccccccccc
Q 041953 250 ILQLSDNFLTGITPSSIYKLLFSI 273 (279)
Q Consensus 250 ~L~l~~n~l~~~~~~~~~~~~~~~ 273 (279)
.+.+-. .++.+...+|.+|.++.
T Consensus 338 ~i~ip~-sv~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 338 RIAIPS-SVTKIPESAFSNCTALN 360 (394)
T ss_dssp EEEECT-TCCBCCGGGGTTCTTCC
T ss_pred EEEECc-ccCEEhHhHhhCCCCCC
Confidence 555532 25555555555554443
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=9.1e-11 Score=98.90 Aligned_cols=201 Identities=16% Similarity=0.194 Sum_probs=114.1
Q ss_pred CCeEEEEEcCCCCccc-c-------CcccccCCCCCCEEEccCCccc---------CCCCccccCCCCCcEEEcccCccc
Q 041953 52 SHRVTVLNISRLNLTG-T-------IPSQLGNLSSLQSLNLSCNRLS---------GSIPSAIFTTYTLKYVSFRKNQLS 114 (279)
Q Consensus 52 ~~~l~~L~l~~~~l~~-~-------~~~~~~~l~~L~~L~l~~~~i~---------~~~~~~~~~~~~L~~L~l~~n~~~ 114 (279)
..+++.|.+......+ . +..+...+++|+.|.+...... +.+...+..+|+|+.|.+++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467777777554331 1 1233456789999998764321 123344567789999999887311
Q ss_pred ccCCccCCCCCCCcEEEeeccccccccChhhh-cCCCCCcEEEeecc--ccccc-----CCccC--CCCccCcEEeccCC
Q 041953 115 GAFPSFAFNTSSLQYLDFGFNTLSGEIPANIC-SNLPFLEYLALSQN--MFHGG-----IPSAL--SNCAYLQRLGLSSN 184 (279)
Q Consensus 115 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n--~l~~~-----~~~~l--~~l~~L~~L~l~~n 184 (279)
.++. + .+++|++|++..+.+.......+. ..+++|++|+++.+ ...+. +...+ ..+++|+.|++.+|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2333 3 378999999988876533332332 36889999988532 11111 11122 23567777777777
Q ss_pred cccccCCccc---CCCCCccEEEccCcccccc----cCccCCCCCCCCEEeccCCcCcccCCccccC-CCCCCeEEccCC
Q 041953 185 DFSGVVPKEI---CNLTKLKGLYLGGNRLQGE----IPRESGNLAELELMSLSENELQGAIPREWGN-LTGLGILQLSDN 256 (279)
Q Consensus 185 ~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~~n 256 (279)
.+.+.....+ ..+++|+.|+++.|.+.+. ++..+..+++|+.|++++|.+.+.....+.. + ...++++++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 6653222111 2356777777777776542 2222334567777777777665433333332 1 345666666
Q ss_pred c
Q 041953 257 F 257 (279)
Q Consensus 257 ~ 257 (279)
.
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 5
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=1.5e-10 Score=97.64 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=122.1
Q ss_pred CCCCEEEccCCcccC-C-------CCccccCCCCCcEEEcccCccc---------ccCCccCCCCCCCcEEEeecccccc
Q 041953 77 SSLQSLNLSCNRLSG-S-------IPSAIFTTYTLKYVSFRKNQLS---------GAFPSFAFNTSSLQYLDFGFNTLSG 139 (279)
Q Consensus 77 ~~L~~L~l~~~~i~~-~-------~~~~~~~~~~L~~L~l~~n~~~---------~~~~~~~~~l~~L~~L~l~~n~~~~ 139 (279)
..++.|.+......+ . +..+...+++|+.|.+...... +.+...+..+|+|+.|.+.++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 357788887554431 1 1223456789999998764321 112234457799999999887422
Q ss_pred ccChhhhcCCCCCcEEEeecccccccCCccCC--CCccCcEEeccC--Cccccc-----CCccc--CCCCCccEEEccCc
Q 041953 140 EIPANICSNLPFLEYLALSQNMFHGGIPSALS--NCAYLQRLGLSS--NDFSGV-----VPKEI--CNLTKLKGLYLGGN 208 (279)
Q Consensus 140 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~~~~~-----~~~~l--~~~~~L~~L~l~~n 208 (279)
.++. + . +++|+.|++..+.+.......+. .+++|+.|+|+. +...+. +...+ ..+++|+.|++.+|
T Consensus 186 ~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 SIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp BCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred eecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 3443 2 3 88999999998887643333333 678999999853 221111 11122 24789999999999
Q ss_pred ccccccCccC---CCCCCCCEEeccCCcCcccC----CccccCCCCCCeEEccCCcccccCccccc
Q 041953 209 RLQGEIPRES---GNLAELELMSLSENELQGAI----PREWGNLTGLGILQLSDNFLTGITPSSIY 267 (279)
Q Consensus 209 ~~~~~~~~~~---~~~~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 267 (279)
.+.+..+..+ ..+++|+.|+|+.|.+.+.. +..+..+++|+.|++++|.++...-..+.
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 8864332222 35789999999999997643 33345679999999999998776554444
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.92 E-value=9.4e-08 Score=81.63 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=90.0
Q ss_pred cChhhhcCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCC
Q 041953 141 IPANICSNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGN 220 (279)
Q Consensus 141 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 220 (279)
+....|.++..|+.+.+..+... ....++..+..|+.+.+.. .+......+|.++.+|+.+.+..+ ++......|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 34456778888999998765443 5556788899999999964 455466678889999999999765 55466778999
Q ss_pred CCCCCEEeccCCcCcccCCccccCCCCCCeEEccCCccc
Q 041953 221 LAELELMSLSENELQGAIPREWGNLTGLGILQLSDNFLT 259 (279)
Q Consensus 221 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~ 259 (279)
+.+|+.+.|..+ ++.+...+|.+|.+|+.+++.++...
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 999999999765 66566788999999999999987543
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.91 E-value=9.8e-08 Score=81.03 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=70.0
Q ss_pred cCCCCCcEEEeecccccccCCccCCCCccCcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCE
Q 041953 147 SNLPFLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELEL 226 (279)
Q Consensus 147 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 226 (279)
.++..|+.+.+..+ ++.....++..+.+|+.+.+..+ +.......|.++.+|+.+.+.++.++......|.++.+|+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 34444444444432 22222334555555555555433 33234455666777777777766666555666777777777
Q ss_pred EeccCCcCcccCCccccCCCCCCeEEccCCcccccCcccccccc
Q 041953 227 MSLSENELQGAIPREWGNLTGLGILQLSDNFLTGITPSSIYKLL 270 (279)
Q Consensus 227 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 270 (279)
+.|..+ ++.+...+|.+|.+|+.+.+..+ ++.+...+|..+.
T Consensus 315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 315 VTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred EEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 777654 55455567777777777777543 6666666776663
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.58 E-value=1.8e-06 Score=73.23 Aligned_cols=148 Identities=13% Similarity=0.096 Sum_probs=111.7
Q ss_pred cccCCCCCcEEEcccCcccccCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccccCCccCCCCcc
Q 041953 96 AIFTTYTLKYVSFRKNQLSGAFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHGGIPSALSNCAY 175 (279)
Q Consensus 96 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 175 (279)
.+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +. .+....|.++..|+.+.+..+ +......++..+.+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccc
Confidence 3445556666666543 33344556778889999998765 44 677888899999999999764 44355567889999
Q ss_pred CcEEeccCCcccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCCcCcccCCccccCCCCCC
Q 041953 176 LQRLGLSSNDFSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSENELQGAIPREWGNLTGLG 249 (279)
Q Consensus 176 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 249 (279)
|+.+.+.++.+......+|.++.+|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++.+...+|.+++.++
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 999999988887677788999999999999765 55466678999999999999765 6656667888876443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=4.7e-09 Score=80.02 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=18.7
Q ss_pred cccCCCCCCEEEccCC-cccCC----CCccccCCCCCcEEEcccCcc
Q 041953 72 QLGNLSSLQSLNLSCN-RLSGS----IPSAIFTTYTLKYVSFRKNQL 113 (279)
Q Consensus 72 ~~~~l~~L~~L~l~~~-~i~~~----~~~~~~~~~~L~~L~l~~n~~ 113 (279)
.+...+.|++|++++| .+.+. +...+...++|++|++++|.+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i 77 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS 77 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 3444455555555555 44421 122233334444555544444
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=7.7e-09 Score=78.84 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=67.5
Q ss_pred cCCCCCcEEEeecc-cccc----cCCccCCCCccCcEEeccCCcccccC----CcccCCCCCccEEEccCcccccc----
Q 041953 147 SNLPFLEYLALSQN-MFHG----GIPSALSNCAYLQRLGLSSNDFSGVV----PKEICNLTKLKGLYLGGNRLQGE---- 213 (279)
Q Consensus 147 ~~~~~L~~L~l~~n-~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~---- 213 (279)
...+.|++|++++| .+.. .+...+...++|++|++++|.+.+.. ...+...+.|++|++++|.+.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 44455555555555 4432 12233444556666666666654321 22233345677777777776532
Q ss_pred cCccCCCCCCCCEEec--cCCcCccc----CCccccCCCCCCeEEccCCccccc
Q 041953 214 IPRESGNLAELELMSL--SENELQGA----IPREWGNLTGLGILQLSDNFLTGI 261 (279)
Q Consensus 214 ~~~~~~~~~~L~~L~l--~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~~~ 261 (279)
+...+...+.|++|+| ++|.+... +...+...+.|+.|++++|.+...
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 3445566677888888 77877643 234456668888888888877543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=9.1e-08 Score=71.56 Aligned_cols=34 Identities=6% Similarity=0.096 Sum_probs=16.1
Q ss_pred CCcEEEeecccccccCCccCCCCccCcEEeccCC
Q 041953 151 FLEYLALSQNMFHGGIPSALSNCAYLQRLGLSSN 184 (279)
Q Consensus 151 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 184 (279)
+|++|+++++.+++.....+..+++|++|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3555555555444333333444445555555444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=1.1e-07 Score=76.20 Aligned_cols=64 Identities=23% Similarity=0.216 Sum_probs=28.8
Q ss_pred CCCCcEEEcccCcccc--cCCccCCCCCCCcEEEeeccccccccChhhhcCCCCCcEEEeecccccc
Q 041953 100 TYTLKYVSFRKNQLSG--AFPSFAFNTSSLQYLDFGFNTLSGEIPANICSNLPFLEYLALSQNMFHG 164 (279)
Q Consensus 100 ~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 164 (279)
+++|+.|+|++|++.+ .++..+..+++|+.|+|++|.+.+.-.-..+..+ +|++|++.+|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 4555555555555543 2223334455555555555555421010111222 55555555555543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=3.1e-07 Score=68.63 Aligned_cols=83 Identities=6% Similarity=0.023 Sum_probs=44.4
Q ss_pred eEEEEEcCCCCccccCcccccCCCCCCEEEccCCc-ccCCCCccccCC----CCCcEEEcccCc-ccccCCccCCCCCCC
Q 041953 54 RVTVLNISRLNLTGTIPSQLGNLSSLQSLNLSCNR-LSGSIPSAIFTT----YTLKYVSFRKNQ-LSGAFPSFAFNTSSL 127 (279)
Q Consensus 54 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~~~~l~~L 127 (279)
+|+.|+++++.++..--..+..+++|++|++++|. +++..-..+..+ ++|++|++++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56777777766654444455666666667766663 543333333332 346666666653 442222233445555
Q ss_pred cEEEeeccc
Q 041953 128 QYLDFGFNT 136 (279)
Q Consensus 128 ~~L~l~~n~ 136 (279)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555553
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=1e-06 Score=70.62 Aligned_cols=40 Identities=33% Similarity=0.421 Sum_probs=17.7
Q ss_pred CCCCCcEEEeecccccc--cCCccCCCCccCcEEeccCCccc
Q 041953 148 NLPFLEYLALSQNMFHG--GIPSALSNCAYLQRLGLSSNDFS 187 (279)
Q Consensus 148 ~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~ 187 (279)
++++|+.|++++|.+++ .++..+..+++|+.|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 34555555555555543 11222333444444444444444
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.40 E-value=0.00038 Score=49.34 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=20.1
Q ss_pred CccEEEccCcccccccCccCCCCCCCCEEeccCCcC
Q 041953 199 KLKGLYLGGNRLQGEIPRESGNLAELELMSLSENEL 234 (279)
Q Consensus 199 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 234 (279)
+++.|++++|.++...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455666666665544444455555566666665544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.23 E-value=3.5e-05 Score=58.60 Aligned_cols=13 Identities=38% Similarity=0.393 Sum_probs=5.8
Q ss_pred CCCcEEEeecccc
Q 041953 125 SSLQYLDFGFNTL 137 (279)
Q Consensus 125 ~~L~~L~l~~n~~ 137 (279)
..|++|+|++|.+
T Consensus 98 ~tL~~L~L~~N~I 110 (197)
T 1pgv_A 98 PSLRVLNVESNFL 110 (197)
T ss_dssp SSCCEEECCSSBC
T ss_pred CccCeEecCCCcC
Confidence 3444444444444
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.16 E-value=8.9e-05 Score=56.38 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=60.7
Q ss_pred cCCCCCcEEEeecc-cccc----cCCccCCCCccCcEEeccCCcccccCC----cccCCCCCccEEEccCcccccc----
Q 041953 147 SNLPFLEYLALSQN-MFHG----GIPSALSNCAYLQRLGLSSNDFSGVVP----KEICNLTKLKGLYLGGNRLQGE---- 213 (279)
Q Consensus 147 ~~~~~L~~L~l~~n-~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n~~~~~---- 213 (279)
.+-+.|++|+++++ .+.+ .+.+++...+.|+.|+|++|.+.+..- ..+..-+.|+.|+++.|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455555555553 4332 122344455566666666666653221 2223335677777777766532
Q ss_pred cCccCCCCCCCCEEeccCC---cCcc----cCCccccCCCCCCeEEccCCcc
Q 041953 214 IPRESGNLAELELMSLSEN---ELQG----AIPREWGNLTGLGILQLSDNFL 258 (279)
Q Consensus 214 ~~~~~~~~~~L~~L~l~~n---~i~~----~~~~~~~~~~~L~~L~l~~n~l 258 (279)
+...+..-+.|+.|+|++| .+.. .+.+.+..-+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2234455566888888754 3322 2234456667888888876654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.53 E-value=0.0067 Score=42.80 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=29.7
Q ss_pred EEEcCCCCcc-ccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCcc
Q 041953 57 VLNISRLNLT-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQL 113 (279)
Q Consensus 57 ~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~~ 113 (279)
.++-++++++ ..+|..+. .+|++|+|++|.|+...+..|..+++|+.|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555666554 13443332 3566667766666644444555555666666555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=88.13 E-value=2.3 Score=27.97 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=35.6
Q ss_pred CCccccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCcEEEcccCc
Q 041953 63 LNLTGTIPSQLGNLSSLQSLNLSCNRLSGSIPSAIFTTYTLKYVSFRKNQ 112 (279)
Q Consensus 63 ~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~n~ 112 (279)
-.++.+-..+|.++..|+.+.|..+ ++.....+|.+|.+|+.+.+....
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 3455566678888888888888775 333566778888888888887643
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.82 E-value=5.4 Score=26.17 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=29.4
Q ss_pred ccccCCcccCCCCCccEEEccCcccccccCccCCCCCCCCEEeccCC
Q 041953 186 FSGVVPKEICNLTKLKGLYLGGNRLQGEIPRESGNLAELELMSLSEN 232 (279)
Q Consensus 186 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 232 (279)
++......|.++..|+.+.+..+- +.+....|.++.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 444445667777777777776643 3355566777777777777654
Done!