BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041956
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp
          Family Of Plant Myb-Related Dna Binding Motifs Of The
          Arabidopsis Response Regulators
          Length = 64

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 45 KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99
          K PR+ WT +LH  F+ AV+ LG  ERA PK +L LMN+  L+  +V SHLQ +R
Sbjct: 4  KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFR 57


>pdb|3K80|A Chain A, Structure Of Essential Protein From Trypanosoma Brucei
 pdb|3K80|B Chain B, Structure Of Essential Protein From Trypanosoma Brucei
          Length = 130

 Score = 30.8 bits (68), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 20/114 (17%)

Query: 19  SSNSVVEEGDQRKASSSSGVRPYVRSKVPRLRWTPDLHRCFVQAVERLGG---------- 68
           S   +V+ GD  + S  +  R +    +   R  P   R FV A+ R GG          
Sbjct: 7   SGGGLVQAGDSLRLSCVASGRAFSSYGMGWFRQAPGKERAFVAAISRSGGLTQYAESLKG 66

Query: 69  -----QERATPKLVLQLMNIKGLSIAHVKSHLQMY-----RSKKIDDHGQGTQL 112
                ++ A   + LQ+ ++K    A       +Y        + D  GQGTQ+
Sbjct: 67  RFAISRDNAKNTVYLQMGSLKPEDTAVYYCAGDLYGLGSHMENEYDSWGQGTQV 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,790,313
Number of Sequences: 62578
Number of extensions: 84066
Number of successful extensions: 229
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 2
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)