BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041956
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis
thaliana GN=At1g14600 PE=2 SV=2
Length = 255
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 60/67 (89%)
Query: 37 GVRPYVRSKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQ 96
GVRPYVRS VPRLRWTP+LHR FV AV+ LGGQ +ATPKLVL++M++KGL+I+HVKSHLQ
Sbjct: 14 GVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQ 73
Query: 97 MYRSKKI 103
MYR +I
Sbjct: 74 MYRGSRI 80
>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4
PE=1 SV=1
Length = 276
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
Query: 29 QRKASSSSGVRPYVRSKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSI 88
+R +SS G++ +R+ PR+RWT LH FV AV+ LGG ERATPK VL+LMN+K L++
Sbjct: 90 KRSSSSMVGLKRSIRA--PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL 147
Query: 89 AHVKSHLQMYRSKKIDDHG 107
AHVKSHLQMYR+ K D G
Sbjct: 148 AHVKSHLQMYRTVKCTDKG 166
>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2
PE=2 SV=1
Length = 388
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 40 PYVRS-KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98
P RS + PR+RWT LH FV AVE LGG ERATPK VL+LM++K L++AHVKSHLQMY
Sbjct: 206 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265
Query: 99 RSKKIDD 105
R+ K D
Sbjct: 266 RTVKTTD 272
>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica
GN=RL9 PE=2 SV=2
Length = 532
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 48/61 (78%)
Query: 45 KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKID 104
+ PR+RWT LH FV AVE LGG ERATPK VL+LM++K L++AHVKSHLQMYR+ K
Sbjct: 323 RAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKST 382
Query: 105 D 105
D
Sbjct: 383 D 383
>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1
SV=1
Length = 403
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 40 PYVRS-KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98
P RS + PR+RWT LH FV AVE LGG ERATPK VL+LM++K L++AHVKSHLQMY
Sbjct: 212 PTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 271
Query: 99 RSKKIDD 105
R+ K +
Sbjct: 272 RTVKTTN 278
>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
Length = 413
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
Query: 15 ISASSSNSVVEEGDQRKASSSSGVRPYVRSKVPRLRWTPDLHRCFVQAVERLGGQERATP 74
I+A+ +V DQ +SS V + R+RWTP+LH FV+AV +LGG ERATP
Sbjct: 203 ITANQQQQMVSSEDQLSGRNSSSS---VATSKQRMRWTPELHEAFVEAVNQLGGSERATP 259
Query: 75 KLVLQLMNIKGLSIAHVKSHLQMYRSKK 102
K VL+L+N GL+I HVKSHLQ YR+ +
Sbjct: 260 KAVLKLLNNPGLTIYHVKSHLQKYRTAR 287
>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3
PE=2 SV=1
Length = 322
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 45 KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102
+ PR+RWT LH FV AV+ LGG ERATPK VL+LM+++ L++AHVKSHLQMYR+ K
Sbjct: 163 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK 220
>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL
PE=2 SV=2
Length = 358
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 44/56 (78%)
Query: 47 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102
PRLRWT +LH FV AV +LGG ++ATPK ++++M +KGL++ H+KSHLQ +R K
Sbjct: 35 PRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2
SV=1
Length = 386
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 45 KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102
K P++ WTP+LHR FVQAVE+L G ++A P +L++MN+K L+ +V SHLQ YRS +
Sbjct: 146 KKPKVDWTPELHRKFVQAVEQL-GVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHR 202
>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis
thaliana GN=ARR20 PE=2 SV=1
Length = 426
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 1 EDGEEEDDDESKTRISASSSNSVVEEGDQRKASSSSGVRPYVRSKVPRLRWTPDLHRCFV 60
E G E D + + + EEG + P +K PR++WTP+LH F
Sbjct: 169 ESGTVESDPDEYDDLEQDNLYESNEEGSKNTCDHKEEKSP---TKKPRMQWTPELHHKFE 225
Query: 61 QAVERLGGQERATPKLVLQLM----NIKGLSIAHVKSHLQMYR--SKK 102
AVE++G E+A PK +L+ M N++GL+ +V SHLQ YR SKK
Sbjct: 226 VAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYRQSSKK 273
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana
GN=APRR2 PE=2 SV=2
Length = 535
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 10/116 (8%)
Query: 2 DGEEEDDDESKTRISASSSNSVV--EEGDQRKASSSSGVRPYVRSKVPRLR--WTPDLHR 57
D E+E++ E+ IS + + + +E + + + SSG++ +K R + WTP+LH+
Sbjct: 248 DSEKEEEGETGDLISEKTDSVDIHKKEDETKPINKSSGIKNVSGNKTSRKKVDWTPELHK 307
Query: 58 CFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS--KKI---DDHGQ 108
FVQAVE+L G ++A P +L+LM + L+ +V SHLQ +R K I DDH
Sbjct: 308 KFVQAVEQL-GVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHRKNILPKDDHNH 362
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana
GN=ARR18 PE=2 SV=2
Length = 635
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Query: 45 KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR--SKK 102
K PR+ W+ +LH+ FV AV++LG ++A PK +L LM+I+GL+ +V SHLQ YR KK
Sbjct: 193 KKPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRLYLKK 251
Query: 103 IDDHGQGTQLLP 114
ID+ GQ + P
Sbjct: 252 IDE-GQQQNMTP 262
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 8/75 (10%)
Query: 25 EEGDQRKASSSSGVRPYVRSKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIK 84
E+GD + +S+ K PR+ W+ +LH+ FV AV +LG E+A PK +L+LMN+
Sbjct: 223 EQGDDKDEDASN-------LKKPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVP 274
Query: 85 GLSIAHVKSHLQMYR 99
GL+ +V SHLQ YR
Sbjct: 275 GLTRENVASHLQKYR 289
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 17/102 (16%)
Query: 6 EDDDESKTRISASSSNS--------VVEEGDQRKASSSSGVRPYVRSKVPRLRWTPDLHR 57
ED D + + ++ + S V ++GD ++ SSS K PR+ W+ +LH+
Sbjct: 176 EDADNNSSSVNEGNGRSSRKRKEEEVDDQGDDKEDSSSL--------KKPRVVWSVELHQ 227
Query: 58 CFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99
FV AV +LG ++A PK +L++MN+ GL+ +V SHLQ YR
Sbjct: 228 QFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYR 268
>sp|Q5NAN5|GLK2_ORYSJ Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica
GN=GLK2 PE=2 SV=1
Length = 539
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102
++ WTP+LHR FVQAVE+L G ++A P +L+LM I+ L+ ++ SHLQ YRS +
Sbjct: 217 KVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQKYRSHR 270
>sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2
SV=2
Length = 420
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 12/96 (12%)
Query: 7 DDDESKTRISASSSNSVVEEGDQRKASSSSGVRPYVRSKVPRLRWTPDLHRCFVQAVERL 66
D D + R +SS++S + S++ G R ++ WTP+LHR FV+AVE+L
Sbjct: 125 DGDSDRKRKYSSSASS-----KNNRISNNEGKRKV------KVDWTPELHRRFVEAVEQL 173
Query: 67 GGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102
G ++A P +L+LM + L+ +V SHLQ YRS +
Sbjct: 174 -GVDKAVPSRILELMGVHCLTRHNVASHLQKYRSHR 208
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 44/60 (73%), Gaps = 3/60 (5%)
Query: 43 RSKVPRLRWTPDLHRCFVQAVERLGGQERATPKLV---LQLMNIKGLSIAHVKSHLQMYR 99
+ + PR+ WT +LH+ F++A+E +GG E+A PK++ LQ M I+G++ ++V SHLQ +R
Sbjct: 212 KPRKPRMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVASHLQKHR 271
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 45 KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS--KK 102
K PR+ WT +LH F+ AV+ LG ERA PK +L LMN+ L+ +V SHLQ +R KK
Sbjct: 182 KKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 240
Query: 103 IDD 105
+ D
Sbjct: 241 VSD 243
>sp|Q5Z5I4|GLK1_ORYSJ Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica
GN=GLK1 PE=2 SV=1
Length = 455
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 51 WTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102
WTP+LHR FVQAVE+L G ++A P +L++M I L+ ++ SHLQ YRS +
Sbjct: 185 WTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSHR 235
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana
GN=ARR14 PE=1 SV=2
Length = 382
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99
SK R+ W+ +LH+ FV AV +LG ++A PK +L+LMN+ GLS +V SHLQ +R
Sbjct: 198 SKKSRVVWSIELHQQFVNAVNKLG-IDKAVPKRILELMNVPGLSRENVASHLQKFR 252
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99
R+ WT +LH+ FV AV +LG E+A PK +L LMN++ L+ +V SHLQ +R
Sbjct: 197 RVVWTVELHKKFVAAVNQLG-YEKAMPKKILDLMNVEKLTRENVASHLQKFR 247
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99
RL WT LHR F+ AV LG +++A PK +L +M +K L+ V SHLQ YR
Sbjct: 200 RLTWTTQLHRQFIAAVNHLG-EDKAVPKKILGIMKVKHLTREQVASHLQKYR 250
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99
RL WT LHR F+ AV LG +++A PK +L +M +K L+ V SHLQ YR
Sbjct: 200 RLTWTTQLHRQFIAAVNHLG-EDKAVPKKILGIMKVKHLTREQVASHLQKYR 250
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99
R+ W+ +LH FV AV ++G +A PK +L LMN+ L+ +V SHLQ YR
Sbjct: 195 RVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYR 246
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 10 ESKTRISASSSNSVVEEGDQRK--------ASSSSGVRPYVRSKVPRLRWTPDLHRCFVQ 61
+S +R S++ S V RK S G +K +++WT LH F+Q
Sbjct: 178 KSDSRTVNSTNGSCVSTDGSRKNRKRKPNGGPSDDGESMSQPAKKKKIQWTDSLHDLFLQ 237
Query: 62 AVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99
A+ +G ++A PK +L M++ L+ +V SHLQ YR
Sbjct: 238 AIRHIG-LDKAVPKKILAFMSVPYLTRENVASHLQKYR 274
>sp|Q9FJ16|APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis
thaliana GN=APRR4 PE=3 SV=1
Length = 292
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQM 97
+K R+ W +LH+ F+ AV+ LG ERA PK +L +M + +S +V SHLQ+
Sbjct: 221 AKKRRVVWDEELHQNFLNAVDFLG-LERAVPKKILDVMKVDYISRENVASHLQV 273
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 10 ESKTRISASSSNSVVEEGDQRK--------ASSSSGVRPYVRSKVPRLRWTPDLHRCFVQ 61
+S TR S++ S V RK S G K ++ WT L F+Q
Sbjct: 181 KSDTRTVNSTNVSHVSTNGSRKNRKRKPKGGPSDDGESLSQPPKKKKIWWTNPLQDLFLQ 240
Query: 62 AVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99
A++ +G ++ PK +L +MN+ L+ +V SHLQ YR
Sbjct: 241 AIQHIG-YDKVVPKKILAIMNVPYLTRENVASHLQKYR 277
>sp|Q9C9F6|APRR6_ARATH Putative two-component response regulator-like APRR6 OS=Arabidopsis
thaliana GN=APRR6 PE=3 SV=2
Length = 755
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 51 WTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101
W + H F+ A+ LG +E PK +L++MN L+ V SHLQ Y+++
Sbjct: 227 WNSERHMKFIAAISILG-EEDFRPKSILEIMNDPNLTHRQVGSHLQKYKAQ 276
>sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=1 SV=1
Length = 2118
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 23 VVEEGDQRKASSSSGVRPYVRSKVPRLRWTPDLHRCF---VQAVERLGGQERATPKLVLQ 79
+ E Q S++SG P V + LHRCF V+++++LG Q + + L
Sbjct: 474 ISEPVCQHLGSATSGACPEVPPE--------KLHRCFRLHVESLKKLGKQAQGCKMVTLW 525
Query: 80 LMNIKGLSIAHVKSHLQMYRSKKIDDHGQG 109
L +K S+ H+ + + K+D G
Sbjct: 526 LAALKPYSLEHMVEPVTFWVRVKMDASRAG 555
>sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3
Length = 2120
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 38 VRPYVRSKVPRLRWTPD-LHRCF---VQAVERLGGQERATPKLVLQLMNIKGLSIAHVKS 93
V+P +VP P+ LHRCF V+++++LG Q + ++L L ++ S H+
Sbjct: 490 VKPGTYPEVP-----PEKLHRCFRLQVESLKKLGKQAQGCKMVILWLAALQPCSPEHMAE 544
Query: 94 HLQMYRSKKID 104
+ + K+D
Sbjct: 545 PVTFWVRVKMD 555
>sp|P14907|NSP1_YEAST Nucleoporin NSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NSP1 PE=1 SV=1
Length = 823
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 4 EEEDDDESKTRISASSSNSVVEEGDQRKASSSSGVRP 40
E+++ DESK+ S S + EEGD KA+ S G +P
Sbjct: 539 EKKESDESKSAFSFGSKPTGKEEGDGAKAAISFGAKP 575
>sp|O14226|EXO84_SCHPO Exocyst complex component exo84 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=exo84 PE=3 SV=2
Length = 584
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 54 DLHRCFVQAV-ERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKIDDHGQGTQL 112
+L+ F + ++L ++R +++L + KG+S++H K ++ RS + GQG +
Sbjct: 405 NLNELFAEFFADKLHNRKRKVTEILLHQLGFKGISLSHGKEIVRYLRSLGHEKEGQGVFM 464
Query: 113 LPITLLV 119
TLL+
Sbjct: 465 KSRTLLI 471
>sp|A2R919|CFT1_ASPNC Protein cft1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=cft1 PE=3 SV=1
Length = 1383
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 22 SVVEEGDQRKASSSSGVRPYVRSKVPRLRWTPDLHRC 58
S++E +R+ S+ + Y R + R W PDL+ C
Sbjct: 101 SLIEWDPERRGISTISIHYYERDDLTRSPWVPDLNNC 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,183,815
Number of Sequences: 539616
Number of extensions: 1420410
Number of successful extensions: 5870
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5763
Number of HSP's gapped (non-prelim): 102
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)