Query 041956
Match_columns 119
No_of_seqs 110 out of 344
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 21:32:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 2.5E-31 8.7E-36 176.6 6.8 59 44-103 3-61 (64)
2 2yum_A ZZZ3 protein, zinc fing 98.2 2.7E-06 9.3E-11 55.4 6.4 55 46-103 6-63 (75)
3 2yus_A SWI/SNF-related matrix- 98.2 4.8E-06 1.6E-10 55.9 6.8 49 46-100 16-64 (79)
4 2cu7_A KIAA1915 protein; nucle 98.2 6.9E-06 2.4E-10 53.4 7.2 54 46-105 7-60 (72)
5 2cqq_A RSGI RUH-037, DNAJ homo 97.8 7.5E-05 2.6E-09 49.4 6.7 58 47-107 7-64 (72)
6 1x41_A Transcriptional adaptor 97.8 7.1E-05 2.4E-09 47.0 6.2 51 46-101 6-56 (60)
7 2elk_A SPCC24B10.08C protein; 97.7 7.3E-05 2.5E-09 46.9 5.8 49 48-100 9-57 (58)
8 2iw5_B Protein corest, REST co 97.6 9.3E-05 3.2E-09 59.3 6.3 50 46-101 131-180 (235)
9 2cqr_A RSGI RUH-043, DNAJ homo 97.6 0.00013 4.6E-09 48.4 5.8 56 44-101 14-69 (73)
10 2xag_B REST corepressor 1; ami 97.6 0.00011 3.8E-09 63.6 6.8 50 46-101 378-427 (482)
11 1ity_A TRF1; helix-turn-helix, 97.5 0.00062 2.1E-08 43.6 7.5 55 44-101 6-60 (69)
12 1guu_A C-MYB, MYB proto-oncoge 97.3 0.00067 2.3E-08 40.9 5.7 47 48-99 3-49 (52)
13 2eqr_A N-COR1, N-COR, nuclear 97.2 0.00096 3.3E-08 42.1 6.2 44 45-94 9-52 (61)
14 1gvd_A MYB proto-oncogene prot 97.2 0.00088 3E-08 40.5 5.6 47 48-99 3-49 (52)
15 3sjm_A Telomeric repeat-bindin 97.2 0.0012 4.1E-08 42.3 6.2 50 46-98 9-58 (64)
16 2d9a_A B-MYB, MYB-related prot 97.2 0.0013 4.6E-08 40.7 6.2 50 46-100 6-55 (60)
17 2din_A Cell division cycle 5-l 97.1 0.0015 5.2E-08 41.3 6.3 49 46-101 7-55 (66)
18 1w0t_A Telomeric repeat bindin 97.1 0.0017 5.9E-08 39.5 6.1 48 48-98 2-49 (53)
19 2cjj_A Radialis; plant develop 96.9 0.0017 5.8E-08 44.9 5.4 52 48-101 8-59 (93)
20 2dim_A Cell division cycle 5-l 96.7 0.0057 1.9E-07 39.0 6.2 50 46-100 7-56 (70)
21 1wgx_A KIAA1903 protein; MYB D 96.6 0.0048 1.7E-07 41.2 5.9 48 50-99 10-57 (73)
22 2yqk_A Arginine-glutamic acid 96.6 0.0095 3.3E-07 37.9 6.9 46 44-94 5-50 (63)
23 2hzd_A Transcriptional enhance 96.6 0.0023 8E-08 43.9 4.2 57 46-105 4-78 (82)
24 3zqc_A MYB3; transcription-DNA 96.5 0.0084 2.9E-07 42.3 6.9 57 47-109 53-109 (131)
25 2ltp_A Nuclear receptor corepr 95.4 0.00058 2E-08 46.2 0.0 50 46-101 14-63 (89)
26 1gv2_A C-MYB, MYB proto-oncoge 96.3 0.01 3.5E-07 40.0 6.1 48 46-99 54-101 (105)
27 2k9n_A MYB24; R2R3 domain, DNA 96.3 0.011 3.8E-07 40.3 6.1 50 46-101 51-100 (107)
28 3osg_A MYB21; transcription-DN 96.2 0.012 4.2E-07 41.2 6.0 51 44-100 7-57 (126)
29 4eef_G F-HB80.4, designed hema 96.1 0.0026 9E-08 43.0 2.4 46 49-96 21-66 (74)
30 3osg_A MYB21; transcription-DN 96.0 0.016 5.4E-07 40.7 6.0 49 47-101 61-109 (126)
31 2aje_A Telomere repeat-binding 96.0 0.016 5.5E-07 40.8 5.9 53 44-99 9-63 (105)
32 1gv2_A C-MYB, MYB proto-oncoge 96.0 0.015 5.2E-07 39.1 5.6 48 48-100 4-51 (105)
33 1h8a_C AMV V-MYB, MYB transfor 95.9 0.021 7.2E-07 39.9 6.2 47 46-98 77-123 (128)
34 2llk_A Cyclin-D-binding MYB-li 95.9 0.022 7.6E-07 37.6 5.9 46 44-96 19-64 (73)
35 1h8a_C AMV V-MYB, MYB transfor 95.5 0.038 1.3E-06 38.5 6.3 50 46-100 25-74 (128)
36 1h89_C C-MYB, MYB proto-oncoge 95.5 0.031 1.1E-06 40.2 6.0 48 46-99 108-155 (159)
37 2k9n_A MYB24; R2R3 domain, DNA 95.4 0.04 1.4E-06 37.5 5.9 46 49-99 2-47 (107)
38 2ckx_A NGTRF1, telomere bindin 95.0 0.064 2.2E-06 36.1 5.9 47 50-99 2-50 (83)
39 2roh_A RTBP1, telomere binding 95.0 0.088 3E-06 38.0 7.0 53 44-99 27-81 (122)
40 2juh_A Telomere binding protei 94.9 0.055 1.9E-06 39.0 5.8 53 44-99 13-67 (121)
41 1h89_C C-MYB, MYB proto-oncoge 94.6 0.095 3.3E-06 37.7 6.3 50 46-100 56-105 (159)
42 3zqc_A MYB3; transcription-DNA 94.5 0.059 2E-06 37.8 4.9 48 48-100 2-49 (131)
43 2crg_A Metastasis associated p 94.0 0.16 5.6E-06 32.8 6.0 44 46-95 6-50 (70)
44 1x58_A Hypothetical protein 49 93.2 0.24 8.1E-06 32.2 5.7 48 46-100 6-54 (62)
45 4a69_C Nuclear receptor corepr 92.0 0.26 9E-06 33.5 4.9 42 47-94 42-83 (94)
46 1ign_A Protein (RAP1); RAP1,ye 87.5 0.58 2E-05 37.6 4.2 56 46-103 6-63 (246)
47 4b4c_A Chromodomain-helicase-D 70.5 6.1 0.00021 28.9 4.6 56 44-100 3-58 (211)
48 1qgp_A Protein (double strande 68.4 8.9 0.00031 24.4 4.5 46 51-99 11-56 (77)
49 2lm1_A Lysine-specific demethy 65.8 3.7 0.00013 27.6 2.4 45 53-98 44-94 (107)
50 2jxj_A Histone demethylase jar 64.9 5.1 0.00018 26.4 2.9 44 54-98 37-86 (96)
51 2eqy_A RBP2 like, jumonji, at 63.0 7.4 0.00025 27.1 3.6 44 54-98 43-92 (122)
52 2cxy_A BAF250B subunit, HBAF25 62.8 4.4 0.00015 28.2 2.4 44 54-98 52-101 (125)
53 2jrz_A Histone demethylase jar 58.1 6 0.00021 27.3 2.4 44 54-98 41-90 (117)
54 2p7v_B Sigma-70, RNA polymeras 57.9 23 0.00079 21.0 4.8 34 66-102 20-53 (68)
55 2li6_A SWI/SNF chromatin-remod 57.8 4.5 0.00015 27.9 1.7 44 53-99 49-96 (116)
56 1c20_A DEAD ringer protein; DN 57.4 8.2 0.00028 26.9 3.0 45 54-99 53-104 (128)
57 1ku3_A Sigma factor SIGA; heli 56.4 24 0.00084 21.2 4.8 42 57-101 16-57 (73)
58 1ofc_X ISWI protein; nuclear p 53.7 19 0.00064 29.3 5.0 50 47-101 109-158 (304)
59 2kk0_A AT-rich interactive dom 53.0 8.7 0.0003 27.5 2.6 46 54-100 65-117 (145)
60 1ig6_A MRF-2, modulator recogn 49.9 4.4 0.00015 27.4 0.5 47 53-100 33-86 (107)
61 3b73_A PHIH1 repressor-like pr 48.0 30 0.001 23.7 4.6 48 49-100 8-55 (111)
62 1tty_A Sigma-A, RNA polymerase 48.0 41 0.0014 21.0 5.0 39 60-101 27-65 (87)
63 2ebi_A DNA binding protein GT- 46.5 43 0.0015 21.3 5.0 55 45-99 1-66 (86)
64 2rq5_A Protein jumonji; develo 45.0 20 0.00068 25.2 3.4 45 54-99 43-94 (121)
65 1tc3_C Protein (TC3 transposas 43.5 34 0.0012 17.7 4.1 41 52-100 7-47 (51)
66 1kkx_A Transcription regulator 43.3 9.4 0.00032 26.8 1.4 45 53-100 48-96 (123)
67 3hm5_A DNA methyltransferase 1 40.0 70 0.0024 21.7 5.4 42 49-94 31-75 (93)
68 2da3_A Alpha-fetoprotein enhan 38.4 68 0.0023 19.7 5.3 58 43-103 16-73 (80)
69 1ofc_X ISWI protein; nuclear p 38.0 33 0.0011 27.8 4.1 46 50-96 214-270 (304)
70 3hug_A RNA polymerase sigma fa 37.9 45 0.0015 20.9 4.0 27 72-101 54-80 (92)
71 3t72_q RNA polymerase sigma fa 36.0 68 0.0023 21.3 4.8 31 66-99 34-64 (99)
72 1xmk_A Double-stranded RNA-spe 33.9 53 0.0018 21.4 3.9 41 54-100 11-52 (79)
73 1or7_A Sigma-24, RNA polymeras 33.0 65 0.0022 21.8 4.4 27 72-101 157-183 (194)
74 2jpc_A SSRB; DNA binding prote 32.9 53 0.0018 18.5 3.5 27 72-101 14-40 (61)
75 1x3u_A Transcriptional regulat 31.3 83 0.0028 18.5 5.2 29 71-102 31-59 (79)
76 1ug2_A 2610100B20RIK gene prod 29.8 1.4E+02 0.0048 20.7 6.6 53 44-99 29-81 (95)
77 1je8_A Nitrate/nitrite respons 26.0 1.2E+02 0.004 18.7 4.4 44 50-102 21-64 (82)
78 2da6_A Hepatocyte nuclear fact 26.0 47 0.0016 22.8 2.7 58 43-101 5-81 (102)
79 2dmn_A Homeobox protein TGIF2L 25.6 1.2E+02 0.0042 19.0 4.6 58 44-101 7-64 (83)
80 2jn6_A Protein CGL2762, transp 25.0 1.3E+02 0.0044 18.7 4.9 48 48-101 3-50 (97)
81 2cuf_A FLJ21616 protein; homeo 23.9 68 0.0023 20.7 3.1 55 44-101 7-76 (95)
82 3c57_A Two component transcrip 23.8 91 0.0031 19.8 3.7 44 51-103 28-71 (95)
83 2lr8_A CAsp8-associated protei 27.2 19 0.00066 23.8 0.0 49 46-98 12-60 (70)
84 1qbj_A Protein (double-strande 21.0 1.7E+02 0.0059 18.6 5.6 46 52-100 8-53 (81)
85 2rnj_A Response regulator prot 20.4 1.1E+02 0.0036 19.0 3.4 43 51-102 30-72 (91)
86 2o8x_A Probable RNA polymerase 20.4 1.3E+02 0.0044 17.0 5.2 29 72-103 32-60 (70)
87 3op0_A Signal transduction pro 20.1 48 0.0016 27.5 2.0 16 86-101 235-250 (323)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.97 E-value=2.5e-31 Score=176.58 Aligned_cols=59 Identities=47% Similarity=0.753 Sum_probs=56.1
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhccc
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKI 103 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~ 103 (119)
++|+|++||+|||++||+||++|| .++|+||.|+++|+++|||+.||+|||||||+...
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999 79999999999999999999999999999998643
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.7e-06 Score=55.37 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=46.5
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCC---CchhhHHhhhCCCCCCHHHHHHhhhhhhhccc
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQER---ATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKI 103 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~---A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~ 103 (119)
..+-.||+|.+..|++||..+|. +. -.|..|.+.| ++.|..||+.|.|+|..+..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHH
Confidence 34568999999999999999993 22 4699999998 57999999999999987644
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.19 E-value=4.8e-06 Score=55.92 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=43.9
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
..+-.||+|.+.+|++||+.+|+ .|..|.++|+ +.|..||+.|.++|.+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLPI 64 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhcc
Confidence 45778999999999999999993 6999999985 6999999999999954
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.18 E-value=6.9e-06 Score=53.37 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=47.0
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhccccC
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKIDD 105 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~~~ 105 (119)
..+-.||+|.+..|+++|..+|- .|..|..+| ++.|..||+.|.++|..+....
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999993 799999986 6899999999999998765443
No 5
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.78 E-value=7.5e-05 Score=49.44 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=47.2
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhccccCCC
Q 041956 47 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKIDDHG 107 (119)
Q Consensus 47 ~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~~~~g 107 (119)
..-.||.|.+..|..|+..+++.....|..|.+.| |.|..+|+.|.+++......+.|
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~~~~~G 64 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSVTCSPG 64 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSCCCCSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhcCccCC
Confidence 34579999999999999999854445789999998 48999999999998776544433
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.77 E-value=7.1e-05 Score=47.04 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=44.0
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
-.+-.||+|...+|++||..+|- ..|..|.+.| ++.|..|++.|-++|-..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQM--CTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHH--TTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHh--CCCCHHHHHHHHHHHccC
Confidence 35567999999999999999992 2599999998 679999999999988653
No 7
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.73 E-value=7.3e-05 Score=46.87 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=42.3
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
+-.||++...++++||+.+|- ..|..|.+.|+. +.|..|++.|-++|.+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGL---GNWADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 346999999999999999992 269999999852 7999999999999875
No 8
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.63 E-value=9.3e-05 Score=59.27 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=45.1
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
+..-+||+|.+..|++|+..+|. .|..|.++| ++.|..||++|.++|+.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~V--gTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVI--GNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHH--SSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 67889999999999999999993 499999996 568999999999999964
No 9
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.59 E-value=0.00013 Score=48.39 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=44.9
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
+...+-.||.+....|+.||..+|......|..|..+| ||.|..+|+.|-+.+...
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 44456679999999999999999932224688899986 689999999998877543
No 10
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.59 E-value=0.00011 Score=63.60 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=45.2
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
+..-+||++.|..|++||..+|. .|..|.++++. .|..||++|.++||.+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 56789999999999999999994 59999999875 7999999999999974
No 11
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.47 E-value=0.00062 Score=43.57 Aligned_cols=55 Identities=11% Similarity=0.153 Sum_probs=47.1
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
.++.|-.||+|.-...+++|+.+|. -.|..|.+.|++.+.|-.|++.+-..|-..
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 4578889999999999999999992 269999999875589999999988887554
No 12
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.29 E-value=0.00067 Score=40.94 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=41.1
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
+-.||+|....++++|..+|. ..|..|.+.| ++.|..|++.|-++|-
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHHc
Confidence 567999999999999999993 3699999997 6899999999988763
No 13
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00096 Score=42.14 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=37.6
Q ss_pred CCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHh
Q 041956 45 KVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSH 94 (119)
Q Consensus 45 kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSH 94 (119)
++..-.||++.|..|++|+..+|. .+..|..+| |+.|..+|..|
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l--~~rt~~~~v~~ 52 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYL--ERKSVPDCVLY 52 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHC--TTSCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHH
Confidence 456778999999999999999992 589999885 68999999755
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.21 E-value=0.00088 Score=40.48 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=40.9
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
+-.||+|....++++|..+|. ..|..|...| ++.|..|++.|-+.|-
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHHc
Confidence 457999999999999999993 2599999997 6899999999988774
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.17 E-value=0.0012 Score=42.34 Aligned_cols=50 Identities=10% Similarity=0.180 Sum_probs=41.6
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
..|-.||+|.-+.++++|+.+|. -.|..|++.+.+.+.|-.|++-+-..|
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999993 259999999888899999998665443
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.16 E-value=0.0013 Score=40.73 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=43.3
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
..+-.||+|....++++|..+|. ..|..|.+.| ++.|..|++.|-++|-.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHHcC
Confidence 56778999999999999999992 2599999997 68999999999888754
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.0015 Score=41.30 Aligned_cols=49 Identities=10% Similarity=0.237 Sum_probs=42.5
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
..+-.||+|....+++++..+|. .|..|.+++ |.|-.||+.|-+.|-..
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhCh
Confidence 45668999999999999999993 699999965 58999999999998664
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.09 E-value=0.0017 Score=39.49 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=41.0
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
|-.||+|.....+++|+.+|. ..|..|.+.|+..+.|-.|++.+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 567999999999999999992 269999999876589999999876655
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.90 E-value=0.0017 Score=44.85 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=43.4
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
.-.||.|....|+.|+..+|......|..|...| ||.|..+|+.|-+.+...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV--EGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS--TTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 4469999999999999999832235689999997 689999999999988643
No 20
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.67 E-value=0.0057 Score=39.00 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=43.4
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
..+-.||+|....++++|..+|- ..|..|...|+ +.|..|++.|-..|-.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHHcC
Confidence 46778999999999999999992 36999999985 8999999999888754
No 21
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.64 E-value=0.0048 Score=41.20 Aligned_cols=48 Identities=10% Similarity=-0.008 Sum_probs=39.2
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 50 RWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
.||.+....|..|+..++-...-.|..|...+ ++.|.++|..|-+...
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V--~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAV--GSRSPEECQRKYMENP 57 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT--TTSCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 59999999999999999843335688899986 5799999998866553
No 22
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.0095 Score=37.88 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=35.6
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHh
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSH 94 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSH 94 (119)
+...+-.||++.|..|.+|+..+|- ....|...| ++..|..+|..+
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~-v~~Kt~~~~v~f 50 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK----NFFRIRKEL-LPNKETGELITF 50 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHS-CTTSCHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHH-cCCCcHHHHHHH
Confidence 3445678999999999999999993 378888732 456899988544
No 23
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=96.58 E-value=0.0023 Score=43.89 Aligned_cols=57 Identities=25% Similarity=0.361 Sum_probs=39.5
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHH------------------hhhCCCCCCHHHHHHhhhhhhhccccC
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVL------------------QLMNIKGLSIAHVKSHLQMYRSKKIDD 105 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~Il------------------elM~v~gLT~~~VkSHLQKYR~~~~~~ 105 (119)
...-+|.++|-..|++|+..+- +... .|-++ ...| ...|+.||.||||--+..+..+
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp-~~g~-~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~~ 78 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYP-PCGR-RKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSRD 78 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSC-SSSC-CCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTTC
T ss_pred CcCCcCCHHHHHHHHHHHHHcC-CCCc-cceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhhh
Confidence 4567899999999999999875 2111 12222 1122 4689999999999988765444
No 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.52 E-value=0.0084 Score=42.27 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=46.7
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhccccCCCCc
Q 041956 47 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKIDDHGQG 109 (119)
Q Consensus 47 ~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~~~~g~~ 109 (119)
.+-.||+|....++++|..+|. .|..|.++| +|.|..+|+.|...|-.+.....+..
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS----KWSVIAKLI--PGRTDNAIKNRWNSSISKRISTNSNH 109 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS----CHHHHTTTS--TTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred cCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 4457999999999999999994 599999886 68999999999888877655544433
No 25
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.35 E-value=0.00058 Score=46.17 Aligned_cols=50 Identities=10% Similarity=0.176 Sum_probs=42.9
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
-.+-.||+|....|+++|..+|- .|..|..+| +|.|..||+.|.+.|..+
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l--~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMV--GSKTVSQCKNFYFNYKKR 63 (89)
Confidence 35668999999999999999993 499999986 689999999998877654
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.32 E-value=0.01 Score=39.96 Aligned_cols=48 Identities=27% Similarity=0.379 Sum_probs=41.0
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
..+-.||+|....++.+|..+|. .|..|.+.| ||.|..+|+.|-..+-
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 34668999999999999999993 599999885 7999999999876553
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.26 E-value=0.011 Score=40.29 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=42.8
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
..+-.||+|....++.+|..+|. .|..|...| ||.|..+|+.|...+..+
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence 34678999999999999999993 599999987 789999999988766543
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.15 E-value=0.012 Score=41.21 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=44.0
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
....+..||+|.-.+++.+|..+|. .|+.|.+.| ++.|..|++.+-..|-.
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYLA 57 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhcc
Confidence 3467788999999999999999993 699999987 57999999998887754
No 29
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.15 E-value=0.0026 Score=42.99 Aligned_cols=46 Identities=24% Similarity=0.220 Sum_probs=38.7
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhh
Q 041956 49 LRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQ 96 (119)
Q Consensus 49 l~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQ 96 (119)
-.||.+....|..|+..++......|.+|.+.+ ||.|.++|+.|.|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V--pGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV--KGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS--CSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc--CCCCHHHHHHHHH
Confidence 359999999999999999854456788898885 6899999999976
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.00 E-value=0.016 Score=40.67 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=42.0
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 47 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 47 ~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
.+-.||+|....++++|..+|. .|..|.+.| +|.|..+|+.|...+..+
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR----QWAIIAKFF--PGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHh
Confidence 4557999999999999999994 599999975 789999999998766553
No 31
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=95.98 E-value=0.016 Score=40.85 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=44.1
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhC--CCCCCHHHHHHhhhhhh
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMN--IKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~--v~gLT~~~VkSHLQKYR 99 (119)
.++.|-.||+|.-...+++|+.+|. -.|+.|+..+. +++.|..+++.+...+-
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrWrnll 63 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKWKTLV 63 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999993 25999999763 48999999997655544
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.98 E-value=0.015 Score=39.13 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=41.4
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
+-.||+|....++.+|+.+|. ..|..|.+.| ++.|..|++.|-+.|-.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhccC
Confidence 457999999999999999994 2599999997 68999999998887743
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.89 E-value=0.021 Score=39.87 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=40.7
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
..+-.||+|....+++++..+|. .|..|.++| ||.|..+|+.|...+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGS--TTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc----CHHHHHHHC--CCCCHHHHHHHHHHH
Confidence 34568999999999999999993 599999986 799999999987654
No 34
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=95.86 E-value=0.022 Score=37.59 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=40.4
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhh
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQ 96 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQ 96 (119)
+...+-.||+|.-+.+++++..+|. .|..|.+.| |.|-.+|+.+..
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G~----kW~~IA~~l---gRt~~q~knRw~ 64 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHGN----DWATIGAAL---GRSASSVKDRCR 64 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHSS----CHHHHHHHH---TSCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC----CHHHHHHHh---CCCHHHHHHHHH
Confidence 4456778999999999999999993 399999998 799999998865
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.50 E-value=0.038 Score=38.53 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
-.+-.||+|.-..++++|+.+|. -.|..|.+.| ++.|..|++.|-..|-.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHL--KGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHS--SSCCHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 45678999999999999999993 2599999997 68999999998887754
No 36
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.49 E-value=0.031 Score=40.24 Aligned_cols=48 Identities=27% Similarity=0.379 Sum_probs=41.3
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
..+-.||+|....+++++.++|. .|..|.+.| ||.|..+|+.|...+-
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~----~W~~Ia~~l--~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNSTM 155 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHTTT
T ss_pred ccccCCChHHHHHHHHHHHHHCC----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 35678999999999999999993 699999985 7999999999876553
No 37
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.36 E-value=0.04 Score=37.47 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=39.7
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 49 LRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 49 l~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
..||+|.-..++.+|..+|. ..|..|.+.| ++.|..|++.+-..|-
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLM--ITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHT--TTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhc--CCCCHHHHHHHHHHHH
Confidence 47999999999999999994 3699999998 4799999998877664
No 38
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=94.98 E-value=0.064 Score=36.09 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=38.7
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhC--CCCCCHHHHHHhhhhhh
Q 041956 50 RWTPDLHRCFVQAVERLGGQERATPKLVLQLMN--IKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~--v~gLT~~~VkSHLQKYR 99 (119)
.||+|....++++|+.+|. -.|+.|+.... +++.|-.+|+.+-..+-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~~RT~~~lKdrWrnll 50 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 4999999999999999993 25999998633 48999999997665544
No 39
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=94.96 E-value=0.088 Score=38.00 Aligned_cols=53 Identities=19% Similarity=0.109 Sum_probs=43.2
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhC--CCCCCHHHHHHhhhhhh
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMN--IKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~--v~gLT~~~VkSHLQKYR 99 (119)
.++.|-.||+|.-+..+++|+.+|. -.|+.|+..+. +++.|..+++.+...+-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999993 25999999763 48999999996544443
No 40
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=94.94 E-value=0.055 Score=39.03 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=44.1
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhC--CCCCCHHHHHHhhhhhh
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMN--IKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~--v~gLT~~~VkSHLQKYR 99 (119)
.++.|-.||+|.-...+++|+.+|. -.|..|+..+. +++.|-.+++.+...+-
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999993 25999999975 38999999997655444
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.56 E-value=0.095 Score=37.65 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
..+-.||+|....++.+|..+|. -.|..|...| ++.|..|++.+-..|-.
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHLN 105 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTS--TTCCHHHHHHHHHHTTC
T ss_pred cCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHc--CCCCHHHHHHHHHHHhC
Confidence 45678999999999999999993 2499999987 68999999998877753
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.46 E-value=0.059 Score=37.85 Aligned_cols=48 Identities=8% Similarity=-0.029 Sum_probs=41.0
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
+..||+|.-+..+.+|..+|. ..|..|.+.| ++.|..|++.+-+.|-.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP---QNWPRITSFL--PNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS---CCGGGGTTSC--TTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCc---CCHHHHHHHH--CCCCHHHHHHHHhhccC
Confidence 346999999999999999993 2599999987 68999999998887754
No 43
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.01 E-value=0.16 Score=32.78 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=35.8
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHh-hhCCCCCCHHHHHHhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQ-LMNIKGLSIAHVKSHL 95 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~Ile-lM~v~gLT~~~VkSHL 95 (119)
...-.||++.+..|.+|+..+|- ....|.. + ++..|..+|..+-
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~--v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK----DFNDIRQDF--LPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS----CHHHHHHTT--CSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc----cHHHHHHHH--cCCCCHHHHHHHH
Confidence 45668999999999999999992 3788887 4 4678988887654
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=93.24 E-value=0.24 Score=32.21 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=39.9
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhC-CCCCCHHHHHHhhhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMN-IKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~-v~gLT~~~VkSHLQKYR~ 100 (119)
+.|-.||+|.-...++.|+.+|. .|+.|+.-.. .++.|..+||. |||.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKd---k~r~ 54 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAH---KYHR 54 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHH---HHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHH---HHHH
Confidence 57888999999999999999993 6999996433 37899999984 5664
No 45
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=91.98 E-value=0.26 Score=33.51 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=33.6
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHh
Q 041956 47 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSH 94 (119)
Q Consensus 47 ~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSH 94 (119)
..-.||++.|..|.+|+.++|- .+..|.+.+ +..|..++--|
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l--~~Kt~~~cV~~ 83 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPK----NFGLIASFL--ERKTVAECVLY 83 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTT----CHHHHHHTC--TTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHHHHc--CCCCHHHHHHH
Confidence 4567999999999999999993 478897775 56788776544
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=87.47 E-value=0.58 Score=37.56 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=43.6
Q ss_pred CCceecCHHHHHHHHHHHHHhCCC-CCCc-hhhHHhhhCCCCCCHHHHHHhhhhhhhccc
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQ-ERAT-PKLVLQLMNIKGLSIAHVKSHLQMYRSKKI 103 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~-~~A~-PK~IlelM~v~gLT~~~VkSHLQKYR~~~~ 103 (119)
..+-.||+|.-+.-+++|..+|-. .... |..|..+| ||.|-.+|++|...|-.+..
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L--pGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV--PNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS--TTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc--CCCCHHHHHHHHHHHHhhhc
Confidence 356689999999999999999931 0122 88899986 79999999999888766543
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=70.52 E-value=6.1 Score=28.93 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=41.1
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
++...--||...-++|+.|+..+|.+ .-.+..|++--.+++-|.+.|+...+-+..
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 45667789999999999999999943 234778888777778899999877666554
No 48
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=68.39 E-value=8.9 Score=24.43 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=37.0
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 51 WTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 51 WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
=|++...+.+.++...|-.+..+.+.|.+.+++ +...|..||.+-.
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~ 56 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHH
Confidence 367888899999999994456788999999986 6778888887664
No 49
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=65.77 E-value=3.7 Score=27.63 Aligned_cols=45 Identities=24% Similarity=0.167 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCCC--HHHHHHhhhhh
Q 041956 53 PDLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGLS--IAHVKSHLQMY 98 (119)
Q Consensus 53 ~ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gLT--~~~VkSHLQKY 98 (119)
-+|+.-|.. |..+||.++ ..|+.|.+.|+++.-| -.++++|=.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 378888865 678999764 3699999999997532 23444444444
No 50
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=64.86 E-value=5.1 Score=26.38 Aligned_cols=44 Identities=23% Similarity=0.025 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCCC--HHHHHHhhhhh
Q 041956 54 DLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGLS--IAHVKSHLQMY 98 (119)
Q Consensus 54 ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gLT--~~~VkSHLQKY 98 (119)
+|+.-|.. |..+||.++ ..|+.|.+.|+++.-+ -.++++|=+||
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 67877765 778898865 4799999999996433 23444444444
No 51
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.02 E-value=7.4 Score=27.08 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCCC--HHHHHHhhhhh
Q 041956 54 DLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGLS--IAHVKSHLQMY 98 (119)
Q Consensus 54 ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gLT--~~~VkSHLQKY 98 (119)
+|++-|.. |..+||.++ ..|+.|.+.|+++.-+ ...+++|=+||
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~ 92 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERI 92 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78887765 788999754 4799999999997533 23555555555
No 52
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=62.79 E-value=4.4 Score=28.25 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCCC--HHHHHHhhhhh
Q 041956 54 DLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGLS--IAHVKSHLQMY 98 (119)
Q Consensus 54 ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gLT--~~~VkSHLQKY 98 (119)
+|++-|.. |..+||.++ ..|+.|.+.|+++.-| -..++.|=.||
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78887765 778999764 3799999999998532 22344444444
No 53
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=58.05 E-value=6 Score=27.32 Aligned_cols=44 Identities=25% Similarity=0.096 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCCC--HHHHHHhhhhh
Q 041956 54 DLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGLS--IAHVKSHLQMY 98 (119)
Q Consensus 54 ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gLT--~~~VkSHLQKY 98 (119)
+|++-|.. |..+||.++ ..|+.|.+.|+++.-| ...+++|=+||
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78887765 778999754 4699999999997433 23455555555
No 54
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=57.92 E-value=23 Score=20.97 Aligned_cols=34 Identities=9% Similarity=-0.022 Sum_probs=25.7
Q ss_pred hCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhcc
Q 041956 66 LGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102 (119)
Q Consensus 66 LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~ 102 (119)
|+|.+.-+.+.|.+.||+ +...|++|+.+=+.+.
T Consensus 20 l~~~~g~s~~eIA~~lgi---s~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 20 IDMNTDYTLEEVGKQFDV---TRERIRQIEAKALRKL 53 (68)
T ss_dssp TTSSSCCCHHHHHHHHTC---CHHHHHHHHHHHHHGG
T ss_pred cCCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHHH
Confidence 444466789999999986 8888888887666543
No 55
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=57.83 E-value=4.5 Score=27.87 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 53 PDLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 53 ~ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
-+|+.-|.. |..+||.++ ..|+.|.+.|+++. -..+++|=.||=
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L 96 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRIL 96 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHH
Confidence 378887765 788999765 47999999999986 456777666653
No 56
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=57.37 E-value=8.2 Score=26.92 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCC-C--HHHHHHhhhhhh
Q 041956 54 DLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGL-S--IAHVKSHLQMYR 99 (119)
Q Consensus 54 ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gL-T--~~~VkSHLQKYR 99 (119)
+|+.-|.. |..+||.++ ..|+.|.+.|+++.- | ...+++|=.||=
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L 104 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYL 104 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 78888865 678999764 469999999999642 2 355666655553
No 57
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=56.35 E-value=24 Score=21.16 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 57 RCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 57 ~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
+..+.....++|.+..+.+.|.+.||+ +...|++|+.+=+.+
T Consensus 16 r~il~l~~~l~~~~~~s~~eIA~~l~i---s~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 16 AMVLKMRKGLIDGREHTLEEVGAYFGV---TRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHTTTTSSCCCHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHH
Confidence 334444444554466889999999986 888888877665544
No 58
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=53.67 E-value=19 Score=29.28 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=40.7
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 47 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 47 ~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
.--.||-.--..|+.|...+|.. ....|...|+ |-|.+.|+-|.+.+-..
T Consensus 109 GF~~W~rrdf~~Fi~a~~kyGr~---~~~~IA~ev~--~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANEKYGRD---DIDNIAKDVE--GKTPEEVIEYNAVFWER 158 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHHHCTT---CHHHHTTSST--TCCHHHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHhCHH---HHHHHHHHhc--CCCHHHHHHHHHHHHHh
Confidence 34469999999999999999952 4678877764 78999999998887654
No 59
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=53.03 E-value=8.7 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCC-C--HHHHHHhhhhhhh
Q 041956 54 DLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGL-S--IAHVKSHLQMYRS 100 (119)
Q Consensus 54 ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gL-T--~~~VkSHLQKYR~ 100 (119)
+|+.-|.. |..+||.++ ..|+.|.+.|+++.- | -..+++|-.||=.
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~ 117 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLY 117 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSS
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHH
Confidence 78887765 778999864 479999999999652 2 3456666666533
No 60
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=49.86 E-value=4.4 Score=27.37 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCC-C--HHHHHHhhhhhhh
Q 041956 53 PDLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGL-S--IAHVKSHLQMYRS 100 (119)
Q Consensus 53 ~ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gL-T--~~~VkSHLQKYR~ 100 (119)
-+|+.-|.. |..+||.++ ..|+.|.+.|+++.- | -.++++|=+||=.
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~ 86 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLIL 86 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 478887765 778999764 479999999998641 1 2456666555533
No 61
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=48.02 E-value=30 Score=23.70 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=39.3
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 49 LRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 49 l~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
..|-...-++.++.+..-| .++|..|.+.+++ ++|+..|..||++-..
T Consensus 8 ~~~md~~d~~IL~~L~~~g---~~s~~eLA~~l~~-giS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 8 GSWMTIWDDRILEIIHEEG---NGSPKELEDRDEI-RISKSSVSRRLKKLAD 55 (111)
T ss_dssp CTTCCHHHHHHHHHHHHHS---CBCHHHHHTSTTC-CSCHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHcC---CCCHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 4688888899999988777 4789999988732 5799999999998775
No 62
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=47.95 E-value=41 Score=21.02 Aligned_cols=39 Identities=15% Similarity=0.009 Sum_probs=27.3
Q ss_pred HHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 60 VQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 60 v~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
+.....|++.+..+.+.|.+.||+ +...|++++.+=+.+
T Consensus 27 l~l~~~l~~~~~~s~~EIA~~lgi---s~~tV~~~~~ra~~k 65 (87)
T 1tty_A 27 LRMRYGLLDGKPKTLEEVGQYFNV---TRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHTTTTSSCCCHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHH
Confidence 333333454466789999999975 888888888765554
No 63
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=46.53 E-value=43 Score=21.26 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=38.3
Q ss_pred CCCceecCHHHHHHHHHHHHHh------CCCCCCchhhHHhhhCC--CCCCHHHHHH---hhhhhh
Q 041956 45 KVPRLRWTPDLHRCFVQAVERL------GGQERATPKLVLQLMNI--KGLSIAHVKS---HLQMYR 99 (119)
Q Consensus 45 kK~Rl~WT~ELH~kFv~Av~~L------Gg~~~A~PK~IlelM~v--~gLT~~~VkS---HLQKYR 99 (119)
|+.+..||.+.-..|+++...+ |+.....|..|.+.|.. -..|..|++. .|.++.
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3567889999999999988642 44445677788877664 2588888874 444443
No 64
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=45.05 E-value=20 Score=25.19 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCCC---HHHHHHhhhhhh
Q 041956 54 DLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGLS---IAHVKSHLQMYR 99 (119)
Q Consensus 54 ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gLT---~~~VkSHLQKYR 99 (119)
+|+.-| .+|..+||.++ ..|+.|.+.|++|... ...+++|=.||=
T Consensus 43 DL~~Ly-~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L 94 (121)
T 2rq5_A 43 DLACFF-RLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYL 94 (121)
T ss_dssp CHHHHH-HHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTH
T ss_pred cHHHHH-HHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHh
Confidence 677766 56778999754 5799999999997432 345666666653
No 65
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=43.51 E-value=34 Score=17.71 Aligned_cols=41 Identities=10% Similarity=-0.097 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 52 TPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 52 T~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
+++....++..+ ..| .+.+.|.+.+++ +..-|..++..|+.
T Consensus 7 ~~~~~~~i~~~~--~~g---~s~~~IA~~lgi---s~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 7 SDTERAQLDVMK--LLN---VSLHEMSRKISR---SRHCIRVYLKDPVS 47 (51)
T ss_dssp CHHHHHHHHHHH--HTT---CCHHHHHHHHTC---CHHHHHHHHHCSTT
T ss_pred CHHHHHHHHHHH--HcC---CCHHHHHHHHCc---CHHHHHHHHhhHHh
Confidence 455555555443 122 467899999986 78889999888864
No 66
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=43.34 E-value=9.4 Score=26.80 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 53 PDLHRCFVQAVERLGGQER----ATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 53 ~ELH~kFv~Av~~LGg~~~----A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
-+|+.-|.. |..+||.++ ..|+.|.+.|+++. -..+++|=.||=.
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 96 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHH
Confidence 367777755 788999765 47899999999987 6677776666644
No 67
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=40.02 E-value=70 Score=21.72 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=35.7
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCC---CCCCHHHHHHh
Q 041956 49 LRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNI---KGLSIAHVKSH 94 (119)
Q Consensus 49 l~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v---~gLT~~~VkSH 94 (119)
--||.|.-..-++-+.++|. .|-.|...+.. ++.|.++||+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~R 75 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKER 75 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHH
Confidence 47999999999999999994 58999999853 57999998764
No 68
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=38.39 E-value=68 Score=19.66 Aligned_cols=58 Identities=22% Similarity=0.194 Sum_probs=35.8
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhccc
Q 041956 43 RSKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKI 103 (119)
Q Consensus 43 ~~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~ 103 (119)
+.++.|.++|++-- ..|+.+.... ...++..+.+|...-+||..+|+.=.|.-|.+..
T Consensus 16 ~~rr~Rt~ft~~Ql-~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 73 (80)
T 2da3_A 16 RDKRLRTTITPEQL-EILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARER 73 (80)
T ss_dssp CCTTCCSSCCTTTH-HHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHh
Confidence 34677888888643 3444444444 2234444444444446899999999998887533
No 69
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=37.99 E-value=33 Score=27.82 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=34.7
Q ss_pred ecCHHHHHHHHHHHHHhCCCCC-CchhhHHhhhC----------CCCCCHHHHHHhhh
Q 041956 50 RWTPDLHRCFVQAVERLGGQER-ATPKLVLQLMN----------IKGLSIAHVKSHLQ 96 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~-A~PK~IlelM~----------v~gLT~~~VkSHLQ 96 (119)
.||++.++-+|..+..+| .+. -.|..|...+. +.++|..+|..|.+
T Consensus 214 ~yteeEDRfLL~~l~k~G-~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 214 NYTEIEDRFLVCMLHKLG-FDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 799999999999999999 432 56888864332 14678888877754
No 70
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=37.85 E-value=45 Score=20.86 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=20.4
Q ss_pred CchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 72 ATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 72 A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
-+-+.|.+.||+ +...|++|+.+-|.+
T Consensus 54 ~s~~eIA~~lgi---s~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 54 WSTAQIATDLGI---AEGTVKSRLHYAVRA 80 (92)
T ss_dssp CCHHHHHHHHTS---CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCc---CHHHHHHHHHHHHHH
Confidence 467778888875 788888888776654
No 71
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=35.97 E-value=68 Score=21.26 Aligned_cols=31 Identities=6% Similarity=-0.034 Sum_probs=20.7
Q ss_pred hCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 66 LGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 66 LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
++|.+.-+-+.|.+.||+ +...|++++.+=+
T Consensus 34 l~~~e~~s~~EIA~~lgi---S~~tVr~~~~rAl 64 (99)
T 3t72_q 34 IDMNTDYTLEEVGKQFDV---TRERIRQIEAKAL 64 (99)
T ss_pred cCCCCCCCHHHHHHHHCc---CHHHHHHHHHHHH
Confidence 333455678888888875 7777777755433
No 72
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=33.89 E-value=53 Score=21.36 Aligned_cols=41 Identities=5% Similarity=0.090 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHH-HHHHhhhhhhh
Q 041956 54 DLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIA-HVKSHLQMYRS 100 (119)
Q Consensus 54 ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~-~VkSHLQKYR~ 100 (119)
+...+.+.-+...|+ ++.+.|.+.+++ |.. .|..||++--.
T Consensus 11 ~~~~~IL~~Lk~~g~---~ta~eiA~~Lgi---t~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 11 EIKEKICDYLFNVSD---SSALNLAKNIGL---TKARDINAVLIDMER 52 (79)
T ss_dssp HHHHHHHHHHHHTCC---EEHHHHHHHHCG---GGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCC---cCHHHHHHHcCC---CcHHHHHHHHHHHHH
Confidence 556777888888884 577889999875 888 99999998654
No 73
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=32.96 E-value=65 Score=21.78 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=19.7
Q ss_pred CchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 72 ATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 72 A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
-+.+.|.+.||+ +...|+++|.+=|.+
T Consensus 157 ~s~~EIA~~lgi---s~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 157 LSYEEIAAIMDC---PVGTVRSRIFRAREA 183 (194)
T ss_dssp CCHHHHHHHTTS---CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHH
Confidence 466777777764 788888888776654
No 74
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.90 E-value=53 Score=18.53 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=22.4
Q ss_pred CchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 72 ATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 72 A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
.+.+.|.+.|++ +...|++|+..-+.+
T Consensus 14 ~s~~eIA~~l~i---s~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 14 YTNHGISEKLHI---SIKTVETHRMNMMRK 40 (61)
T ss_dssp CCSHHHHHHTCS---CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 478999999976 889999998877664
No 75
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.33 E-value=83 Score=18.52 Aligned_cols=29 Identities=21% Similarity=0.084 Sum_probs=22.5
Q ss_pred CCchhhHHhhhCCCCCCHHHHHHhhhhhhhcc
Q 041956 71 RATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102 (119)
Q Consensus 71 ~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~ 102 (119)
.-+.+.|.+.|++ +...|++|+..-+.+.
T Consensus 31 g~s~~eIA~~l~i---s~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 31 GLPNKSIAYDLDI---SPRTVEVHRANVMAKM 59 (79)
T ss_dssp TCCHHHHHHHTTS---CHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHHHHH
Confidence 3578899999875 8888999887766543
No 76
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=29.78 E-value=1.4e+02 Score=20.66 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=41.4
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhh
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYR 99 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR 99 (119)
....-+.||.|--+-.+.+.++-| ...-+...|.+.++ +.+.+||+-.+|..-
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G-~s~~tFa~iA~~L~--Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQG-AQPHTFSVISQQLG--NKTPVEVSHRFRELM 81 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTT-SCTTTHHHHHHHHS--SCCHHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcC-CChhHHHHHHHHHc--cCCHHHHHHHHHHHH
Confidence 345678899999999999999998 43446666777764 479999999888654
No 77
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=26.00 E-value=1.2e+02 Score=18.68 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=29.9
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhcc
Q 041956 50 RWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102 (119)
Q Consensus 50 ~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~ 102 (119)
.+|+..-+-|.- + + +..+-+.|.+.|++ +...|++|+..-+.+.
T Consensus 21 ~Lt~~e~~vl~l-~--~---~g~s~~eIA~~l~i---s~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILKL-I--A---QGLPNKMIARRLDI---TESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHHH-H--T---TTCCHHHHHHHHTS---CHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-H--H---cCCCHHHHHHHHCc---CHHHHHHHHHHHHHHH
Confidence 355555444433 2 2 23578999999985 8899999998766543
No 78
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.96 E-value=47 Score=22.83 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=33.5
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCC-CCCCchhhHHhhhCC------------------CCCCHHHHHHhhhhhhhc
Q 041956 43 RSKVPRLRWTPDLHRCFVQAVERLGG-QERATPKLVLQLMNI------------------KGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 43 ~~kK~Rl~WT~ELH~kFv~Av~~LGg-~~~A~PK~IlelM~v------------------~gLT~~~VkSHLQKYR~~ 101 (119)
+.++.|+.||++-- ..|+....-.- ++...=..|.+.+|. ..||-.+|..-.|.-|.+
T Consensus 5 ~~Rr~Rt~ft~~ql-~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPASQ-QILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHHH-HHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 35789999998643 44444444441 111111235555631 158888998888877763
No 79
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=25.60 E-value=1.2e+02 Score=19.03 Aligned_cols=58 Identities=9% Similarity=0.017 Sum_probs=36.5
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
.+++|.+.|.+--......+...--.--.++....+|...-+||..||+.=.|..|.+
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r 64 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRR 64 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhh
Confidence 4678888888755544444443311112344445555555679999999999988874
No 80
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=25.01 E-value=1.3e+02 Score=18.68 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=33.0
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhc
Q 041956 48 RLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 48 Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~ 101 (119)
|-.||+++-...|..+..-+| .+...|...+|| +...|..-+.+|+..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g---~s~~~ia~~~gI---s~~tl~rW~~~~~~~ 50 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG---ASLQQIANDLGI---NRVTLKNWIIKYGSN 50 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG---SCHHHHHHHHTS---CHHHHHHHHHHHCCC
T ss_pred CCCCCHHHHHHHHHHHHHcCC---ChHHHHHHHHCc---CHHHHHHHHHHHhhc
Confidence 457899987666665532202 356788888775 788888888888763
No 81
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.91 E-value=68 Score=20.67 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=31.7
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchhh---HHhhhC------------CCCCCHHHHHHhhhhhhhc
Q 041956 44 SKVPRLRWTPDLHRCFVQAVERLGGQERATPKL---VLQLMN------------IKGLSIAHVKSHLQMYRSK 101 (119)
Q Consensus 44 ~kK~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~---IlelM~------------v~gLT~~~VkSHLQKYR~~ 101 (119)
.++.|..||++-... |+....-- .-.+... |.+.++ -..||..+|..=.|.-|.+
T Consensus 7 ~rr~R~~ft~~ql~~-Le~~F~~~--~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k 76 (95)
T 2cuf_A 7 GRGSRFTWRKECLAV-MESYFNEN--QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKE 76 (95)
T ss_dssp CCCCSCCCCHHHHHH-HHHHHHHC--SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHH-HHHHHhcC--CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHH
Confidence 467899999965443 33333332 1122222 444444 1228999999888877763
No 82
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=23.77 E-value=91 Score=19.75 Aligned_cols=44 Identities=16% Similarity=-0.009 Sum_probs=29.6
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhccc
Q 041956 51 WTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKI 103 (119)
Q Consensus 51 WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~ 103 (119)
.|+..-+-|.- + +. .-+-+.|.+.|++ +...|++|+..-+.+..
T Consensus 28 Lt~~e~~vl~l-~--~~---g~s~~eIA~~l~i---s~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 28 LTDQERTLLGL-L--SE---GLTNKQIADRMFL---AEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCHHHHHHHHH-H--HT---TCCHHHHHHHHTC---CHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH-H--Hc---CCCHHHHHHHHCc---CHHHHHHHHHHHHHHHc
Confidence 55555444433 2 22 2478999999976 88999999987776533
No 83
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=27.24 E-value=19 Score=23.79 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=37.3
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhh
Q 041956 46 VPRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMY 98 (119)
Q Consensus 46 K~Rl~WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKY 98 (119)
..=+.||.|.-+-.+.+.++-| ...-++..|.+.+ +.|.+||+-.+|..
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G-~s~~tfa~iA~~L---nks~~QV~~RF~~L 60 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRG-PSSKTFAYLAAKL---DKNPNQVSERFQQL 60 (70)
Confidence 4567899999999999999888 3334666677665 47899998777653
No 84
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=20.97 E-value=1.7e+02 Score=18.64 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhh
Q 041956 52 TPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100 (119)
Q Consensus 52 T~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~ 100 (119)
..+..++.++++...|--+..+-..|.+.+|+ ++..|..||.+-..
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHH
Confidence 45677888999998882245677889999885 78889998877643
No 85
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=20.44 E-value=1.1e+02 Score=19.05 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=29.4
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCchhhHHhhhCCCCCCHHHHHHhhhhhhhcc
Q 041956 51 WTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 102 (119)
Q Consensus 51 WT~ELH~kFv~Av~~LGg~~~A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~ 102 (119)
.|+..-.-|.- + +.| -+.+.|.+.|++ +...|++|+..-+.+.
T Consensus 30 Lt~~e~~vl~l-~--~~g---~s~~eIA~~l~i---s~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 30 LTEREMEILLL-I--AKG---YSNQEIASASHI---TIKTVKTHVSNILSKL 72 (91)
T ss_dssp CCSHHHHHHHH-H--HTT---CCTTHHHHHHTC---CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH-H--HcC---CCHHHHHHHHCc---CHHHHHHHHHHHHHHH
Confidence 45555444433 2 222 467899999975 8999999998776653
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=20.38 E-value=1.3e+02 Score=17.02 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=23.4
Q ss_pred CchhhHHhhhCCCCCCHHHHHHhhhhhhhccc
Q 041956 72 ATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKI 103 (119)
Q Consensus 72 A~PK~IlelM~v~gLT~~~VkSHLQKYR~~~~ 103 (119)
.+.+.|.+.||+ +...|++++.+-+.+..
T Consensus 32 ~s~~eIA~~lgi---s~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 32 LSYADAAAVCGC---PVGTIRSRVARARDALL 60 (70)
T ss_dssp CCHHHHHHHHTS---CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCc---CHHHHHHHHHHHHHHHH
Confidence 578999999986 88999999887776533
No 87
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=20.10 E-value=48 Score=27.48 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=15.0
Q ss_pred CCHHHHHHhhhhhhhc
Q 041956 86 LSIAHVKSHLQMYRSK 101 (119)
Q Consensus 86 LT~~~VkSHLQKYR~~ 101 (119)
+|..+|+..||+||.+
T Consensus 235 lTydEV~~~L~~~~~K 250 (323)
T 3op0_A 235 LTYDEVQERLQACRDK 250 (323)
T ss_dssp CCHHHHHHHTTGGGGS
T ss_pred eeHHHHHHHHHHhccC
Confidence 8999999999999875
Done!