BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041957
         (734 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
           Thetaiotaomicron
          Length = 612

 Score =  155 bits (393), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 156/318 (49%), Gaps = 34/318 (10%)

Query: 16  SLIINGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFS 75
           + ++NGE  V+ +  IHYPR P+E W   I   K  G + I  YVFWN HEP+ G+YDF+
Sbjct: 14  TFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFA 73

Query: 76  GRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCD--------- 126
           G++D+  F +  Q  G Y  +R GP++ +EW  GGLP+WL     I  R           
Sbjct: 74  GQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXERVK 133

Query: 127 ---NEPFKKMKRLYASQGGPIILSQIENEYQMVENAFGERGPPYIKWAAEMAVGLQTGVP 183
              NE  K++  L  S+GG II  Q+ENEY     AFG   P   +    +     TGVP
Sbjct: 134 LFLNEVGKQLADLQISKGGNIIXVQVENEY----GAFGIDKPYISEIRDXVKQAGFTGVP 189

Query: 184 WVMCK-----QDDAPDPV---INACNGRKCGETFKGPNS--PNKPSIWTENWTSRYQAYG 233
              C      +++A D +   IN   G    E FK      P+ P   +E W+  +  +G
Sbjct: 190 LFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWFDHWG 249

Query: 234 EDPIGRTADDIAFHVALWVARNGSFVNYYMYHGGTNFGREASAFV-----TASYYD-DAP 287
                R+A+++       + RN SF + Y  HGGT+FG    A       T + YD DAP
Sbjct: 250 AKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFSPTCTSYDYDAP 308

Query: 288 LDEYGMINQPKWGHLKEL 305
           ++E G +  PK+  ++ L
Sbjct: 309 INESGKVT-PKYLEVRNL 325


>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
          Length = 654

 Score =  129 bits (323), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 140/322 (43%), Gaps = 37/322 (11%)

Query: 6   RGGEVTYDGRSLIINGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLH 65
           R  E+ Y   S + +G+     SGSIHY R PR  W   + K K  GL+ IQTYV WN H
Sbjct: 7   RMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFH 66

Query: 66  EPQPGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRC 125
           EP PG+Y FS   D+  F++     GL   +R GP+I +EW  GGLP WL +   I  R 
Sbjct: 67  EPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRS 126

Query: 126 DNEPF------------KKMKRLYASQGGPIILSQIENEY-----------QMVENAFGE 162
            +  +             KMK L    GGP+I  Q+ENEY           + ++  F  
Sbjct: 127 SDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRH 186

Query: 163 R-GPPYIKWAAEMAVGLQTGVPWVMCKQDDAPDPVINACNGRKCGETFKGPN--SPNKPS 219
             G   + +  + A        ++ C         ++   G    + F       P  P 
Sbjct: 187 HLGDDVVLFTTDGAHKT-----FLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPL 241

Query: 220 IWTENWTSRYQAYGEDPIGRTADDIAFHVALWVARNGSFVNYYMYHGGTNF-----GREA 274
           I +E +T     +G+       + +A  +   +AR G+ VN YM+ GGTNF         
Sbjct: 242 INSEFYTGWLDHWGQPHSTIKTEAVASSLYDILAR-GASVNLYMFIGGTNFAYWNGANSP 300

Query: 275 SAFVTASYYDDAPLDEYGMINQ 296
            A    SY  DAPL E G + +
Sbjct: 301 YAAQPTSYDYDAPLSEAGDLTE 322



 Score = 30.0 bits (66), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 573 LNLNGMRKGEARVNGRSIGRYWPSLITPRGEPSQISYNIPRSFL 616
           +   G  KG+  +NG ++GRYWP+    RG   Q++  +P+  L
Sbjct: 548 IQFPGWTKGQVWINGFNLGRYWPA----RG--PQLTLFVPQHIL 585


>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
           Complex With Galactose
 pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
           Complex With Galactose
 pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
 pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
          Length = 595

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 136/314 (43%), Gaps = 52/314 (16%)

Query: 19  INGERKVLFSGSIHYPRSPREMWPSLISKAKEGGLDVIQTYVFWNLHEPQPGKYDFSGRR 78
           ++G+   + SG+IHY R P E W   +   K  G + ++TYV WNLHEP  G++ F G  
Sbjct: 12  LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71

Query: 79  DLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNEPFKKMKRLYA 138
           DL +F++  Q  GLYA +R  PFI +EW +GGLP WL     +  R  +  + +    Y 
Sbjct: 72  DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLL-TKNMRIRSSDPAYIEAVGRYY 130

Query: 139 SQ------------GGPIILSQIENEY--------------QMVENA------FGERGPP 166
            Q            GG I++ Q+ENEY              Q++E        F   GP 
Sbjct: 131 DQLLPRLVPRLLDNGGNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTCPLFTSDGP- 189

Query: 167 YIKWAAEMAVGLQTGVPWVMCKQDDAPDPVINACNGRKCGETFKGPNSPNKPSIWTENWT 226
              W A +  G        +     +  P     N  +  E F   +    P +  E W 
Sbjct: 190 ---WRATLKAGTLIEEDLFVTGNFGSKAPY----NFSQMQEFFD-EHGKKWPLMCMEFWD 241

Query: 227 SRYQAYGEDPIGRTADDIAFHVALWVARNGSFVNYYMYHGGTNFG-------REASAFVT 279
             +  + E  I R   ++A  V   V   GS +N YM+HGGTNFG       R       
Sbjct: 242 GWFNRWKEPIITRDPKELADAVRE-VLEQGS-INLYMFHGGTNFGFMNGCSARGTLDLPQ 299

Query: 280 ASYYD-DAPLDEYG 292
            + YD DA LDE G
Sbjct: 300 VTSYDYDALLDEEG 313



 Score = 30.0 bits (66), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 7/45 (15%)

Query: 573 LNLNGMRKGEARVNGRSIGRYWPSLITPRGEPSQISYNIPRSFLK 617
           L+L+   KG A VNG+++GR+W   + P      +S  IP S+LK
Sbjct: 523 LDLSEFGKGVAFVNGQNLGRFWN--VGP-----TLSLYIPHSYLK 560


>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
           Sp.
 pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
           Sp. In Complex With Galactose
          Length = 971

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 144/364 (39%), Gaps = 67/364 (18%)

Query: 10  VTYDGRSLIINGERKVLFSGSIHYPRSP-REMWPSLISKAKEGGLDVIQTYVFWNLHEPQ 68
           VT+D  S+ +NGER ++FSG +H  R P   ++  +  K K  G + +  YV W L E  
Sbjct: 6   VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65

Query: 69  PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNE 128
           PG Y   G  DL  F    +  G+Y   R GP+I +E S GG P WL  V GI  R  +E
Sbjct: 66  PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDE 124

Query: 129 PFKKMKRLYAS------------QGGPIILSQIENEYQMVENAFGERGPP---YIKWAAE 173
            + K    YAS             GGPIIL Q ENEY       G  G P   Y+++  +
Sbjct: 125 AYLKATDNYASNIAATIAKAQITNGGPIILYQPENEYSGA--CCGYNGFPDGSYMQYIED 182

Query: 174 MAVGLQTGVPWVM----CKQDDAPDPVINACN---------GRKCGETFKGPN------- 213
            A      VP++         +AP     A +         G  C      P+       
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242

Query: 214 -------SPNKPSIWTENWTSRYQAYGEDPIGRTA-------------DDIAFHVALWVA 253
                  SP+ P    E     +  +G     + A             +D +F VA    
Sbjct: 243 HTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVA---- 298

Query: 254 RNGSFVNYYMYHGGTNFGREASAFVTASYYDDAPLDEYGMINQPKWGHLKELHAAIKLCS 313
               F+N YM  GGTN+G         SY   + + E   I + K+  LK L    K+  
Sbjct: 299 ----FLNLYMIFGGTNWGNLGHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSP 354

Query: 314 NTLL 317
             L+
Sbjct: 355 GYLV 358


>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
           Beta-Galactosidase
 pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Galactose
 pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Iptg
 pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Petg
          Length = 1003

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 14/189 (7%)

Query: 10  VTYDGRSLIINGERKVLFSGSIHYPRSPR-EMWPSLISKAKEGGLDVIQTYVFWNLHEPQ 68
           VT+D  SL ++GER V+FSG +H  R P   ++  +  K K  G + +  YV W L E +
Sbjct: 26  VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85

Query: 69  PGKYDFSGRRDLVRFIKEIQAQGLYASIRIGPFIQSEWSYGGLPFWLHDVPGITFRCDNE 128
           PG++   G   L  F +     G+Y   R GP+I +E S GG P WL  V G   R D  
Sbjct: 86  PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144

Query: 129 PFKKMKRLYASQ------------GGPIILSQIENEYQMVENAFGERGPPYIKWAAEMAV 176
            +      Y +             GGP+IL Q ENEY            PY+++  + A 
Sbjct: 145 DYLHATDNYVAHIASIIAKAQITNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQAR 204

Query: 177 GLQTGVPWV 185
                VP +
Sbjct: 205 NAGIIVPLI 213


>pdb|2ZX0|A Chain A, Rhamnose-Binding Lectin Csl3
 pdb|2ZX0|B Chain B, Rhamnose-Binding Lectin Csl3
 pdb|2ZX1|A Chain A, Rhamnose-Binding Lectin Csl3
 pdb|2ZX1|B Chain B, Rhamnose-Binding Lectin Csl3
 pdb|2ZX2|A Chain A, Rhamnose-Binding Lectin Csl3
 pdb|2ZX2|B Chain B, Rhamnose-Binding Lectin Csl3
 pdb|2ZX3|A Chain A, Rhamnose-Binding Lectin Csl3
 pdb|2ZX3|B Chain B, Rhamnose-Binding Lectin Csl3
 pdb|2ZX4|A Chain A, Rhamnose-Binding Lectin Csl3
 pdb|2ZX4|B Chain B, Rhamnose-Binding Lectin Csl3
          Length = 195

 Score = 35.0 bits (79), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 681 CDSPNSKFAAEKACLGKRSCLIPASDQFFDGDPCPSKKKSLIVEAHC 727
           C S +S     + C GK  C++PAS+  F GDPC    K L  +  C
Sbjct: 49  CLSQSSTSKMAERCGGKSECIVPASNFVF-GDPCVGTYKYLDTKYSC 94



 Score = 33.1 bits (74), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 681 CDSPNSKFAAEKACLGKRSCLIPASDQFFDGDPCPSKKKSLIVEAHC 727
           C S ++     + C GKR C++  S+  F GDPC    K L V   C
Sbjct: 149 CLSQSTTSKMAERCDGKRQCIVKVSNSVF-GDPCVGTYKYLDVAYTC 194


>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
           Caulobacter Crescentus Cb15
          Length = 552

 Score = 33.5 bits (75), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 10  VTYDGR-SLIINGERKVLFSGSIH----YPRSPREMWPSLISKAKEGGLDVIQTYVFWNL 64
           VT DGR +L ++G   +  +  ++    +P    ++WP++    ++ G + +Q  + W  
Sbjct: 43  VTKDGRHALXVDGAPFLXLAAQVNNSSAWPSQXAKVWPAI----EKVGANTVQVPIAWEQ 98

Query: 65  HEPQPGKYDFS 75
            EP  G++DFS
Sbjct: 99  IEPVEGQFDFS 109


>pdb|3UGJ|A Chain A, Formyl Glycinamide Ribonucletide Amidotransferase From
           Salmonella Typhimurum: Role Of The Atp Complexation And
           Glutaminase Domain In Catalytic Coupling
          Length = 1303

 Score = 32.3 bits (72), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 23/125 (18%)

Query: 318 LGKAMTPLQLGPKQ-EAYLFAENSSEECASAFLVNKDKQNVDVVFQ-----NSSYKLLAN 371
           L +A T L   P   E Y+FA+ +SE C           N D +        S +K++ N
Sbjct: 198 LQEAFTKLGRNPNDIELYMFAQANSEHCRHKIF------NADWIIDGKPQPKSLFKMIKN 251

Query: 372 SISILPDYQWEEFKEPIPNFEDTSLKSDTLLEHTDTTKDTSDYLWYSFSFQPEPSDTRAQ 431
           +    PDY    +K+           +  ++E +   +  +D+    + F  EP+    +
Sbjct: 252 TFETTPDYVLSAYKD-----------NAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMK 300

Query: 432 LSVHS 436
           +  H+
Sbjct: 301 VETHN 305


>pdb|1T3T|A Chain A, Structure Of Formylglycinamide Synthetase
 pdb|3UJN|A Chain A, Formyl Glycinamide Ribonucleotide Amidotransferase From
           Salmonella Typhimurium : Role Of The Atp Complexation
           And Glutaminase Domain In Catalytic Coupling
 pdb|3UMM|A Chain A, Formylglycinamide Ribonucleotide Amidotransferase From
           Salmonella Typhimurium: Role Of The Atp Complexation And
           Glutaminase Domain In Catalytic Coupling
          Length = 1303

 Score = 32.3 bits (72), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 23/125 (18%)

Query: 318 LGKAMTPLQLGPKQ-EAYLFAENSSEECASAFLVNKDKQNVDVVFQ-----NSSYKLLAN 371
           L +A T L   P   E Y+FA+ +SE C           N D +        S +K++ N
Sbjct: 198 LQEAFTKLGRNPNDIELYMFAQANSEHCRHKIF------NADWIIDGKPQPKSLFKMIKN 251

Query: 372 SISILPDYQWEEFKEPIPNFEDTSLKSDTLLEHTDTTKDTSDYLWYSFSFQPEPSDTRAQ 431
           +    PDY    +K+           +  ++E +   +  +D+    + F  EP+    +
Sbjct: 252 TFETTPDYVLSAYKD-----------NAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMK 300

Query: 432 LSVHS 436
           +  H+
Sbjct: 301 VETHN 305


>pdb|1KWG|A Chain A, Crystal Structure Of Thermus Thermophilus A4
          Beta-Galactosidase
 pdb|1KWK|A Chain A, Crystal Structure Of Thermus Thermophilus A4
          Beta-Galactosidase In Complex With Galactose
          Length = 645

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 29 GSIHYPRS-PREMWPSLISKAKEGGLDVIQTYVF-WNLHEPQPGKYDFSGRRDLVRFIKE 86
          G  +YP   P+E W     + +E GL  ++   F W L EP+PG+ ++     L   I  
Sbjct: 3  GVCYYPEHWPKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGW---LDEAIAT 59

Query: 87 IQAQGL 92
          + A+GL
Sbjct: 60 LAAEGL 65


>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
          Length = 498

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 45 ISKAKEGGLDVIQTYVFWNLHEPQ-PGKYDFSGRRDLVRFIKE 86
          + + K GG D +   V+W + E + P +YD+S  R+L + +K+
Sbjct: 40 LKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKK 82


>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
           Family Member 3b In Complex With Adp
 pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
           Family Member 3b In Complex With Adp
          Length = 372

 Score = 30.0 bits (66), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 428 TRAQLSVHSLGHVLHAFVNGVPVGSAHGSYKNTSFTLQTDFSLSNGINNVSLLSVMVGLP 487
           T+  LS+ +LG+V+ A V+G    S H  Y+++  T     SL      V + +V     
Sbjct: 279 TKINLSLSALGNVISALVDG---KSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASY 335

Query: 488 DSGAYLERKRYGPVAVSIQNK 508
           +    L   RY   A +I+NK
Sbjct: 336 NVEETLTTLRYANRAKNIKNK 356


>pdb|2JX9|A Chain A, Solution Structure Of The Gal_lectin Domain Of Mouse
           Latrophilin-1 Gpcr
 pdb|2JXA|A Chain A, Mouse Latrophilin-1 Gpcr Gal_lectin Domain In Complex With
           Rhamnose
          Length = 106

 Score = 29.3 bits (64), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 681 CDSPNSKFAAEKACLGKRSCLIPASDQFFDGDPCPSKKKSLIVEAHCGPISI 732
           C  P++     + C  +  C++ A    F  DPCP   K L V+  C P  +
Sbjct: 55  CYLPDAFKIMSQRCNNRTQCVVVAGSDAFP-DPCPGTYKYLEVQYDCVPYKV 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,188,389
Number of Sequences: 62578
Number of extensions: 1094515
Number of successful extensions: 2339
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2316
Number of HSP's gapped (non-prelim): 29
length of query: 734
length of database: 14,973,337
effective HSP length: 106
effective length of query: 628
effective length of database: 8,340,069
effective search space: 5237563332
effective search space used: 5237563332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)